BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036340
         (579 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255560453|ref|XP_002521241.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539509|gb|EEF41097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 662

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/577 (75%), Positives = 498/577 (86%), Gaps = 1/577 (0%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGYVKR EM KARKLFDEMP+RDVVSWN++ISGY+S RG  F+EE R LFD MPER C
Sbjct: 84  MISGYVKRGEMTKARKLFDEMPERDVVSWNLIISGYVSCRGKRFIEEGRNLFDKMPERCC 143

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT+ISGYAK G M+EAL LFN+MP +N VSWNAM+SGFLQNGDV  AIEFF RMP R
Sbjct: 144 VSWNTMISGYAKNGRMDEALGLFNTMPEKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPER 203

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  SLSALVSGLIQN ELD+A R+L+  G+     E LV AYNTLI GYGQRGRV+EA+ 
Sbjct: 204 DVTSLSALVSGLIQNSELDQAERILLDYGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQN 263

Query: 181 LFDKIPVNCDRGEGNV-RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           LFDKIP   D+G+G   RF+RN+VSWN+MIMCY KAGDV+SAR++F+QM +RD+FSWNTM
Sbjct: 264 LFDKIPFYNDQGKGRTGRFERNVVSWNTMIMCYVKAGDVISARKLFDQMPDRDSFSWNTM 323

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           ISGY+HVLDMEEASNLF KMP PDTL+WN M+SGYAQ G+LELA DFF+RMPQKNLVSWN
Sbjct: 324 ISGYVHVLDMEEASNLFHKMPSPDTLSWNLMISGYAQSGSLELAHDFFERMPQKNLVSWN 383

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           S+IAG E N DY GAI LFIQMQVEGEK DRHT SS+LS+SSGIVDL LGMQIHQ+V+KT
Sbjct: 384 SVIAGYEKNGDYIGAINLFIQMQVEGEKSDRHTLSSLLSVSSGIVDLQLGMQIHQLVSKT 443

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
           VIPDVP+NNALITMY+RCGAI EAR IF EMKL K V+SWNAMIGG ASHG+ATEALELF
Sbjct: 444 VIPDVPLNNALITMYSRCGAIFEARTIFYEMKLQKEVISWNAMIGGYASHGYATEALELF 503

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           K MRSFKV PTYITFISVL+ACAHAGLVEEGR+ F+SMV++YG+EPR+EHFASLVDIVGR
Sbjct: 504 KLMRSFKVQPTYITFISVLNACAHAGLVEEGRRIFESMVSDYGVEPRVEHFASLVDIVGR 563

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G+LE+A+DLI  M  EPDKAVWGALLGA RVHNNVE+A+VAAEALMK+EP++S PY+LL
Sbjct: 564 QGQLEEALDLINSMTIEPDKAVWGALLGASRVHNNVEMARVAAEALMKLEPDSSVPYILL 623

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           YNMY DVG+WD+A E+R +M+ NNIKK    SWVD S
Sbjct: 624 YNMYVDVGQWDNAAEIRSMMERNNIKKEAAISWVDSS 660


>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial [Vitis vinifera]
          Length = 681

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/579 (72%), Positives = 490/579 (84%), Gaps = 1/579 (0%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+GYV+RREMAKARKLFDEMP RDVVSWN+MISGY+S +G  ++EE R+LFD MPERDC
Sbjct: 104 MITGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCQGR-WVEEGRHLFDEMPERDC 162

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT+ISGY ++G M+EAL+LF+SM  RNVVSWNAM++GFLQNGDV  AIEFF RMP R
Sbjct: 163 VSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPER 222

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           DSASLSALV+GLIQNGELDEA R+L+    + D   DLV AYN L+ GYGQ GRV++AR+
Sbjct: 223 DSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQ 282

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD+IP      +   RF+RN+VSWNSMIMCY KA D+ SAR +F+QM ERDT SWNTMI
Sbjct: 283 LFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMI 342

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           SGY+ + DMEEA  LF +MP+PDTLTWN+M+SG+AQ GNLELA   F  +PQKNLVSWNS
Sbjct: 343 SGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNS 402

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           MIAG E N DY+GA +L+ QM ++GEKPDRHT SS+LS+ SG   LHLGMQIHQ +TKTV
Sbjct: 403 MIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTV 462

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
           IPD+PINN+LITMY+RCGAIVEAR IF+E+KL K V+SWNAMIGG A HGFA +ALELF+
Sbjct: 463 IPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFE 522

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M+  KV PTYITFISVL+ACAHAG V+EGR HFKSM  E+GIEPRIEHFASLVDIVGRH
Sbjct: 523 LMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRH 582

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G+LE+AMDLI  MPFEPDKAVWGALLGACRVHNNVELA+VAAEALMK+EPE+S PYVLL+
Sbjct: 583 GQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYVLLH 642

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFSPCG 579
           NMYADVG+WD+A E+R++M+ NNI+K  GYSWVD S  G
Sbjct: 643 NMYADVGQWDNATEMRMMMERNNIRKQPGYSWVDSSHSG 681



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 154/516 (29%), Positives = 251/516 (48%), Gaps = 61/516 (11%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D  T N  IS   + G + EA  LF++MP RN+V+WN+MI+G+++  ++A A + FD MP
Sbjct: 66  DLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMP 125

Query: 119 GRDSASLSALVSGLIQ-NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
            RD  S + ++SG +   G   E  R L       +  E    ++NT+I GY + GR++E
Sbjct: 126 DRDVVSWNLMISGYVSCQGRWVEEGRHLFD-----EMPERDCVSWNTMISGYTRSGRMDE 180

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           A +LFD +             +RN+VSWN+M+  + + GDV  A E F +M ERD+ S +
Sbjct: 181 ALQLFDSMQ------------ERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLS 228

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPD------TLTWNAMVSGYAQIGNLELALDFFKRMP 291
            +++G I   +++EA  + +     D         +N +++GY Q G ++ A   F ++P
Sbjct: 229 ALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIP 288

Query: 292 ------------QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
                       ++N+VSWNSMI      +D   A  LF QM+      +R T  S  +M
Sbjct: 289 FYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMK------ERDTI-SWNTM 341

Query: 340 SSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
            SG V +    +   +  +   PD    N++I+ +A+ G +  AR +F  +   KN+VSW
Sbjct: 342 ISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIP-QKNLVSW 400

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N+MI G  ++G    A EL++ M      P   T  SVLS C+    +  G Q  + +  
Sbjct: 401 NSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITK 460

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
              + P I    SL+ +  R G + +A  +   +  + +   W A++G    H       
Sbjct: 461 T--VIPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHG------ 512

Query: 520 VAAEAL--------MKVEPENSTPYVLLYNMYADVG 547
            AA+AL        +KV P   T ++ + N  A  G
Sbjct: 513 FAADALELFELMKRLKVRPTYIT-FISVLNACAHAG 547



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 99/232 (42%), Gaps = 12/232 (5%)

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           SIL   S    LH  +   Q    +V  D+   N  I+   R G I EAR +F+ M   +
Sbjct: 38  SILKNLSPPPHLHCFVSTLQQPKNSVSLDLYTPNKRISHLIRNGRINEARALFDAMP-QR 96

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           N+V+WN+MI G        +A +LF  M    V+ ++   IS   +C     VEEGR  F
Sbjct: 97  NIVTWNSMITGYVRRREMAKARKLFDEMPDRDVV-SWNLMISGYVSC-QGRWVEEGRHLF 154

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
             M     +      + +++    R GR+++A+ L   M  E +   W A++     + +
Sbjct: 155 DEMPERDCVS-----WNTMISGYTRSGRMDEALQLFDSMQ-ERNVVSWNAMVTGFLQNGD 208

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
           VE    A E  M++   +S     L       G  D+A  + L  +  +  K
Sbjct: 209 VER---AIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTSRRQDDDK 257


>gi|224103137|ref|XP_002312939.1| predicted protein [Populus trichocarpa]
 gi|222849347|gb|EEE86894.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  856 bits (2211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/579 (70%), Positives = 495/579 (85%), Gaps = 5/579 (0%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  YVKRRE+AKARKLFDEMPQRD+VSWN+MISGY+S  G  FL+E R LFD MPERD 
Sbjct: 34  IIRAYVKRREIAKARKLFDEMPQRDIVSWNLMISGYVSCHGIRFLKEGRNLFDRMPERDI 93

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT+ISGYAK G M+EALR+F  MP  +VVSWNA+++GFLQNGDVA AIE+F+RMP R
Sbjct: 94  VSWNTMISGYAKNGRMDEALRMFKLMPEGDVVSWNAIVTGFLQNGDVARAIEYFERMPER 153

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGG--EDLVRAYNTLIVGYGQRGRVEEA 178
           D+ASLSALVSGLI+NGELDEAARV+V+     DGG  E+L++AYNTLI GYG+R RV+EA
Sbjct: 154 DAASLSALVSGLIRNGELDEAARVVVRFER--DGGRKENLLQAYNTLIAGYGRRDRVDEA 211

Query: 179 RKLFDKIPV-NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           RKLFD+IP  +     G+ RF RN+VSWN+MIMCY KAG++V ARE+F+QM+ERDT SWN
Sbjct: 212 RKLFDQIPFCDGKGKGGDGRFGRNVVSWNTMIMCYVKAGNIVFARELFDQMMERDTISWN 271

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           TMISGY+++LDM+EAS LF +MP+PD  +WN M++G+AQIG+L+   D F RMPQKNLVS
Sbjct: 272 TMISGYVNMLDMDEASRLFCEMPNPDIFSWNKMIAGHAQIGDLDRVNDLFGRMPQKNLVS 331

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WNS+I G E N DY GAIK+FIQMQVEGEKPDRHT SS+LS+S+GIVDL LGMQIHQ+VT
Sbjct: 332 WNSVITGYEKNDDYIGAIKIFIQMQVEGEKPDRHTLSSVLSVSAGIVDLQLGMQIHQLVT 391

Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
           KTVIPDVPINNALITMY+RCGAI+EA  IF+E+KL K V+SWNAMIGG ASHG+A EALE
Sbjct: 392 KTVIPDVPINNALITMYSRCGAIIEAGTIFDEVKLQKEVISWNAMIGGYASHGYAVEALE 451

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           +FK M+SF V PT+ITFISVL ACAHAGLVEEGR+ F+SM +E+GIEP +EH+ASLVDI+
Sbjct: 452 VFKLMKSFDVRPTHITFISVLHACAHAGLVEEGREIFESMADEFGIEPSVEHYASLVDIM 511

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
            RHG+LE A+DLI  MPFEPDKAVWGALL A +VHN +E+A+VAAEAL+++EP++S PYV
Sbjct: 512 SRHGQLEQALDLINSMPFEPDKAVWGALLSAAKVHNKIEVARVAAEALIRLEPDSSAPYV 571

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           LLYNMYADVG+WD A EVR++M+ +NIKK   YSWVD S
Sbjct: 572 LLYNMYADVGQWDSAAEVRIMMERSNIKKQAAYSWVDSS 610



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 228/471 (48%), Gaps = 50/471 (10%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N  IS  AK G ++EA  LF+ M   N VSWNA+I  +++  ++A A + FD MP RD  
Sbjct: 1   NKKISNLAKNGRIDEARALFDQMEETNTVSWNAIIRAYVKRREIAKARKLFDEMPQRDIV 60

Query: 124 SLSALVSGLIQNGE---LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           S + ++SG +       L E   +  +   R     D+V ++NT+I GY + GR++EA +
Sbjct: 61  SWNLMISGYVSCHGIRFLKEGRNLFDRMPER-----DIV-SWNTMISGYAKNGRMDEALR 114

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +F  +P      EG+V      VSWN+++  + + GDV  A E FE+M ERD  S + ++
Sbjct: 115 MFKLMP------EGDV------VSWNAIVTGFLQNGDVARAIEYFERMPERDAASLSALV 162

Query: 241 SGYIHVLDMEEASNLFVKMPHPD------TLTWNAMVSGYAQIGNLELALDFFKRMP--- 291
           SG I   +++EA+ + V+              +N +++GY +   ++ A   F ++P   
Sbjct: 163 SGLIRNGELDEAARVVVRFERDGGRKENLLQAYNTLIAGYGRRDRVDEARKLFDQIPFCD 222

Query: 292 ----------QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
                      +N+VSWN+MI       +   A +LF QM       +R T  S  +M S
Sbjct: 223 GKGKGGDGRFGRNVVSWNTMIMCYVKAGNIVFARELFDQMM------ERDTI-SWNTMIS 275

Query: 342 GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           G V++    +  ++  +   PD+   N +I  +A+ G +     +F  M   KN+VSWN+
Sbjct: 276 GYVNMLDMDEASRLFCEMPNPDIFSWNKMIAGHAQIGDLDRVNDLFGRMP-QKNLVSWNS 334

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           +I G   +     A+++F  M+     P   T  SVLS  A    ++ G Q    +V + 
Sbjct: 335 VITGYEKNDDYIGAIKIFIQMQVEGEKPDRHTLSSVLSVSAGIVDLQLGMQ-IHQLVTKT 393

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
            I P +    +L+ +  R G + +A  +   +  + +   W A++G    H
Sbjct: 394 VI-PDVPINNALITMYSRCGAIIEAGTIFDEVKLQKEVISWNAMIGGYASH 443


>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 649

 Score =  853 bits (2204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/575 (68%), Positives = 493/575 (85%), Gaps = 1/575 (0%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGYV+RRE+A+AR+LFDEMP+RDVVSWN+++SGY S  GS F+EE R LF++MP+RDC
Sbjct: 75  MISGYVQRREIARARQLFDEMPRRDVVSWNLIVSGYFSCCGSRFVEEGRRLFELMPQRDC 134

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNTVISGYAK G M++AL+LFN+MP  N VS+NA+I+GFL NGDV +A+ FF  MP  
Sbjct: 135 VSWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYNAVITGFLLNGDVESAVGFFRTMPEH 194

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           DS SL AL+SGL++NGELD AA +L +CG+  DG +DLV AYNTLI GYGQRG VEEAR+
Sbjct: 195 DSTSLCALISGLVRNGELDLAAGILRECGNGDDGKDDLVHAYNTLIAGYGQRGHVEEARR 254

Query: 181 LFDKIPVNCDRG-EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           LFD IP + D G EG  RF+RN+VSWNSM+MCY KAGD+V ARE+F++M+ERD  SWNT+
Sbjct: 255 LFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCYVKAGDIVFARELFDRMVERDNCSWNTL 314

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           IS Y+ + +MEEAS LF +MP PD L+WN+++SG AQ G+L LA DFF+RMP KNL+SWN
Sbjct: 315 ISCYVQISNMEEASKLFREMPSPDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWN 374

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           ++IAG E N+DY+GAIKLF +MQ+EGE+PD+HT SS++S+S+G+VDL+LG Q+HQ+VTKT
Sbjct: 375 TIIAGYEKNEDYKGAIKLFSEMQLEGERPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKT 434

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
           V+PD PINN+LITMY+RCGAIV+A  +F E+KL K+V++WNAMIGG ASHG A EALELF
Sbjct: 435 VLPDSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGSAAEALELF 494

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           K M+  K+ PTYITFISVL+ACAHAGLVEEG + FKSM+N+YGIEPR+EHFASLVDI+GR
Sbjct: 495 KLMKRLKIHPTYITFISVLNACAHAGLVEEGWRQFKSMINDYGIEPRVEHFASLVDILGR 554

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G+L++AMDLI  MPF+PDKAVWGALLGACRVHNNVELA VAA+AL+++EPE+S PYVLL
Sbjct: 555 QGQLQEAMDLINTMPFKPDKAVWGALLGACRVHNNVELALVAADALIRLEPESSAPYVLL 614

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           YNMYA++G+WDDA  VR+LM+  N+KK  GYSWVD
Sbjct: 615 YNMYANLGQWDDAESVRVLMEEKNVKKQAGYSWVD 649



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 148/335 (44%), Gaps = 68/335 (20%)

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM------------------------ 249
           ++G +  AR +F+ M  RDT +WN+MISGY+   ++                        
Sbjct: 50  RSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMPRRDVVSWNLIVSG 109

Query: 250 ----------EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
                     EE   LF  MP  D ++WN ++SGYA+ G ++ AL  F  MP+ N VS+N
Sbjct: 110 YFSCCGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYN 169

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV-----DLHLGMQIHQ 354
           ++I G   N D E A+  F  M      P+ H  +S+ ++ SG+V     DL  G+    
Sbjct: 170 AVITGFLLNGDVESAVGFFRTM------PE-HDSTSLCALISGLVRNGELDLAAGILREC 222

Query: 355 MVTKTVIPD-VPINNALITMYARCGAIVEARIIFE------------EMKLLKNVVSWNA 401
                   D V   N LI  Y + G + EAR +F+            + +  +NVVSWN+
Sbjct: 223 GNGDDGKDDLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNS 282

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           M+      G    A ELF  M    V     ++ +++S       +EE  + F+ M +  
Sbjct: 283 MMMCYVKAGDIVFARELFDRM----VERDNCSWNTLISCYVQISNMEEASKLFREMPS-- 336

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
              P +  + S++  + + G L  A D  + MP +
Sbjct: 337 ---PDVLSWNSIISGLAQKGDLNLAKDFFERMPHK 368


>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  850 bits (2196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/577 (68%), Positives = 492/577 (85%), Gaps = 8/577 (1%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+GYV RRE+A+AR+LFDEMP+RDVVSWN+++SGY S RGS F+EE R LF++MP+RDC
Sbjct: 76  MITGYVHRREIARARQLFDEMPRRDVVSWNLIVSGYFSCRGSRFVEEGRRLFELMPQRDC 135

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNTVISGYAK G M++AL+LFN+MP RN VS NA+I+GFL NGDV +A++FF  MP  
Sbjct: 136 VSWNTVISGYAKNGRMDQALKLFNAMPERNAVSSNALITGFLLNGDVDSAVDFFRTMPEH 195

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
            S SLSAL+SGL++NGELD AA +L +CG   +G +DLV AYNTLI GYGQRG VEEAR+
Sbjct: 196 YSTSLSALISGLVRNGELDMAAGILCECG---NGDDDLVHAYNTLIAGYGQRGHVEEARR 252

Query: 181 LFDKIPVNCDRG---EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           LFD IP   DRG   EG  RF+RN+VSWNSM+MCY KAGD+VSARE+F++M+E+DT SWN
Sbjct: 253 LFDGIPD--DRGDGDEGQRRFRRNVVSWNSMMMCYVKAGDIVSARELFDRMVEQDTCSWN 310

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           TMISGY+ + +MEEAS LF +MP PD L+WN +VSG+AQ G+L LA DFF+RMP KNL+S
Sbjct: 311 TMISGYVQISNMEEASKLFREMPIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLIS 370

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WNS+IAG E N+DY+GAI+LF +MQ EGE+PDRHT SS++S+ +G+V+L+LG QIHQ+VT
Sbjct: 371 WNSIIAGYEKNEDYKGAIQLFSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVT 430

Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
           K VIPD PINN+LITMY+RCGAIV+A  +F E+KL K+V++WNAMIGG ASHG A EALE
Sbjct: 431 KIVIPDSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGLAAEALE 490

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           LFK M+  K+ PTYITFISV++ACAHAGLVEEGR+ FKSM+N+YGIE R+EHFASLVDI+
Sbjct: 491 LFKLMKRLKIHPTYITFISVMNACAHAGLVEEGRRQFKSMINDYGIERRVEHFASLVDIL 550

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
           GR G+L++AMDLI  MPF+PDKAVWGALL ACRVHNNVELA VAA+AL+++EPE+S PYV
Sbjct: 551 GRQGQLQEAMDLINTMPFKPDKAVWGALLSACRVHNNVELALVAADALIRLEPESSAPYV 610

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           LLYN+YA++G+WDDA  VR+LM+  N+KK  GYSWVD
Sbjct: 611 LLYNIYANLGQWDDAESVRVLMEEKNVKKQAGYSWVD 647



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 182/438 (41%), Gaps = 101/438 (23%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM---------------- 249
           N  I    ++G +  AR +F+ M  RDT +WN+MI+GY+H  ++                
Sbjct: 43  NKKISNLIRSGRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDVV 102

Query: 250 ------------------EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
                             EE   LF  MP  D ++WN ++SGYA+ G ++ AL  F  MP
Sbjct: 103 SWNLIVSGYFSCRGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMP 162

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV---DLHL 348
           ++N VS N++I G   N D + A+  F  M      P+ H  +S+ ++ SG+V   +L +
Sbjct: 163 ERNAVSSNALITGFLLNGDVDSAVDFFRTM------PE-HYSTSLSALISGLVRNGELDM 215

Query: 349 GMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFE------------EMKLLKNV 396
              I           V   N LI  Y + G + EAR +F+            + +  +NV
Sbjct: 216 AAGILCECGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNV 275

Query: 397 VSWNAMIGGCASHGFATEALELFKSM-------------------------RSFK--VLP 429
           VSWN+M+      G    A ELF  M                         + F+   +P
Sbjct: 276 VSWNSMMMCYVKAGDIVSARELFDRMVEQDTCSWNTMISGYVQISNMEEASKLFREMPIP 335

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED---A 486
             +++  ++S  A  G +   +  F+ M         +++  S   I+  + + ED   A
Sbjct: 336 DVLSWNLIVSGFAQKGDLNLAKDFFERMP--------LKNLISWNSIIAGYEKNEDYKGA 387

Query: 487 MDLIKGMPFE---PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
           + L   M FE   PD+    +++  C    N+ L +   + + K+   +S     L  MY
Sbjct: 388 IQLFSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTKIVIPDSPINNSLITMY 447

Query: 544 ADVGRWDDA----NEVRL 557
           +  G   DA    NE++L
Sbjct: 448 SRCGAIVDACTVFNEIKL 465


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/574 (67%), Positives = 484/574 (84%), Gaps = 6/574 (1%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+ YVKRREM KAR+LF+EMP RD+VSWN+M+SGYIS  G  F+E AR +FD MPE DC
Sbjct: 94  MITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISC-GGKFVERARNMFDQMPETDC 152

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT++SGYAK+G M++A  LFN MP RNVVSWNAM+SG+L NG V  AIEFF  MP R
Sbjct: 153 VSWNTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKR 212

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           DSASL ALVSGLIQN +L EA R+L++ G     G DLV AYNTLI GYGQ+G   EARK
Sbjct: 213 DSASLRALVSGLIQNDKLVEAERILLQYGGNVGKG-DLVDAYNTLIAGYGQKGMAYEARK 271

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD+IP+ CD G      +RN++SWNSMIMCY +AGD+VSARE+F++M+ERDTFSWNTMI
Sbjct: 272 LFDRIPLCCDCGYS----RRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMI 327

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           SGY+ +LDM+EASNLF +MP PDTL+WN M+SG+++IG+L+LA D FKR+P+K+LVSWNS
Sbjct: 328 SGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNS 387

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           MI+G E N+DY+GA+ +F+QMQ+EG+KPDRHT SSILS  +G+VDL LG QIHQ+VTK  
Sbjct: 388 MISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAF 447

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
           I D+PINN+L+TMY+RCGAIVEAR++F+EM L ++V+SWNAMIGG A HGFATEAL+LF 
Sbjct: 448 IADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFD 507

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M+   V P+YITFISVL+ACAHAGL+EEGR+ F SMVN +GI+P++EH+A+LVDI+GRH
Sbjct: 508 LMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRH 567

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G+LE+AM LI  MP EPDKAVWGALLGAC+VHNNVE+A+ AAEALMK++PE+S PYVLL+
Sbjct: 568 GQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLH 627

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           NMYADVGRWDDA E+R +M+ NN++K  GYS VD
Sbjct: 628 NMYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVD 661



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 145/343 (42%), Gaps = 52/343 (15%)

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPD 263
           S N  I    + G +  ARE+F+     +T +WN MI+ Y+   +M +A  LF +MP+ D
Sbjct: 59  SLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRD 118

Query: 264 TLTWNA---------------------------------MVSGYAQIGNLELALDFFKRM 290
            ++WN                                  M+SGYA+ G ++ A + F  M
Sbjct: 119 IVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEM 178

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
           P++N+VSWN+M++G   N   E AI+ F  M        R   S ++     +    + +
Sbjct: 179 PERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAERILL 238

Query: 351 QIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLL-------KNVVSWNAMI 403
           Q    V K  + D    N LI  Y + G   EAR +F+ + L        +NV+SWN+MI
Sbjct: 239 QYGGNVGKGDLVDA--YNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMI 296

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
                 G    A ELF  M    V     ++ +++S       ++E    F  M      
Sbjct: 297 MCYVRAGDIVSARELFDKM----VERDTFSWNTMISGYVQILDMKEASNLFSRMP----- 347

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           EP    +  ++      G L+ A DL K +P E     W +++
Sbjct: 348 EPDTLSWNMMISGFSEIGSLKLAHDLFKRIP-EKSLVSWNSMI 389



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 41/191 (21%)

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           +S N  IS  I    + EA  LF    H +T+TWN M++ Y +   +  A   F+ MP +
Sbjct: 58  YSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNR 117

Query: 294 NLVSWNSMIAGCET--NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           ++VSWN M++G  +   K  E A  +F QM      P+    S                 
Sbjct: 118 DIVSWNLMLSGYISCGGKFVERARNMFDQM------PETDCVSW---------------- 155

Query: 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
                           N +++ YA+ G + +A  +F EM   +NVVSWNAM+ G   +G 
Sbjct: 156 ----------------NTMLSGYAKSGTMDKAEELFNEMP-ERNVVSWNAMVSGYLMNGH 198

Query: 412 ATEALELFKSM 422
             +A+E FK M
Sbjct: 199 VEKAIEFFKLM 209


>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  840 bits (2169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/574 (67%), Positives = 484/574 (84%), Gaps = 6/574 (1%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+ YVKRREM KAR+LF+EMP RD+VSWN+M+SGYIS  G  F+E AR +FD MPE DC
Sbjct: 94  MITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISC-GGKFVERARNMFDQMPETDC 152

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT++SGYAK+G M++A  LFN MP RNVVSWNAM+SG+L NG V  AIEFF  MP R
Sbjct: 153 VSWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKR 212

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           DSASL AL+SGLIQN +L EA R+L++ G     G DLV AYNTLI GYGQ+G   EARK
Sbjct: 213 DSASLRALISGLIQNDKLVEAERILLQYGGNVGKG-DLVDAYNTLIAGYGQKGMAYEARK 271

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD+IP+ CD G      +RN++SWNSMIMCY +AGD+VSARE+F++M+ERDTFSWNTMI
Sbjct: 272 LFDRIPLCCDCGYS----RRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMI 327

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           SGY+ +LDM+EASNLF +MP PDTL+WN M+SG+++IG+L+LA D FKR+P+K+LVSWNS
Sbjct: 328 SGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNS 387

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           MI+G E N+DY+GA+ +F+QMQ+EG+KPDRHT SSILS  +G+VDL LG QIHQ+VTK  
Sbjct: 388 MISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAF 447

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
           I D+PINN+L+TMY+RCGAIVEAR++F+EM L ++V+SWNAMIGG A HGFATEAL+LF 
Sbjct: 448 IADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFD 507

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M+   V P+YITFISVL+ACAHAGL+EEGR+ F SMVN +GI+P++EH+A+LVDI+GRH
Sbjct: 508 LMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRH 567

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G+LE+AM LI  MP EPDKAVWGALLGAC+VHNNVE+A+ AAEALMK++PE+S PYVLL+
Sbjct: 568 GQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLH 627

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           NMYADVGRWDDA E+R +M+ NN++K  GYS VD
Sbjct: 628 NMYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVD 661



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 145/343 (42%), Gaps = 52/343 (15%)

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPD 263
           S N  I    + G +  ARE+F+     +T +WN MI+ Y+   +M +A  LF +MP+ D
Sbjct: 59  SLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRD 118

Query: 264 TLTWNA---------------------------------MVSGYAQIGNLELALDFFKRM 290
            ++WN                                  M+SGYA+ G ++ A + F  M
Sbjct: 119 IVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEM 178

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
           P++N+VSWN+M++G   N   E AI+ F  M        R   S ++     +    + +
Sbjct: 179 PERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQNDKLVEAERILL 238

Query: 351 QIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLL-------KNVVSWNAMI 403
           Q    V K  + D    N LI  Y + G   EAR +F+ + L        +NV+SWN+MI
Sbjct: 239 QYGGNVGKGDLVDA--YNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMI 296

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
                 G    A ELF  M    V     ++ +++S       ++E    F  M      
Sbjct: 297 MCYVRAGDIVSARELFDKM----VERDTFSWNTMISGYVQILDMKEASNLFSRMP----- 347

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           EP    +  ++      G L+ A DL K +P E     W +++
Sbjct: 348 EPDTLSWNMMISGFSEIGSLKLAHDLFKRIP-EKSLVSWNSMI 389



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 41/191 (21%)

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           +S N  IS  I    + EA  LF    H +T+TWN M++ Y +   +  A   F+ MP +
Sbjct: 58  YSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNR 117

Query: 294 NLVSWNSMIAGCET--NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           ++VSWN M++G  +   K  E A  +F QM      P+    S                 
Sbjct: 118 DIVSWNLMLSGYISCGGKFVERARNMFDQM------PETDCVSW---------------- 155

Query: 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
                           N +++ YA+ G + +A  +F EM   +NVVSWNAM+ G   +G 
Sbjct: 156 ----------------NTMLSGYAKSGMMDKAEELFNEMP-ERNVVSWNAMVSGYLMNGH 198

Query: 412 ATEALELFKSM 422
             +A+E FK M
Sbjct: 199 VEKAIEFFKLM 209


>gi|147841850|emb|CAN67319.1| hypothetical protein VITISV_039344 [Vitis vinifera]
          Length = 761

 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/535 (72%), Positives = 453/535 (84%), Gaps = 1/535 (0%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+GYV+RREMAKARKLFDEMP RDVVSWN+MISGY+S RG  ++EE R+LFD MPERDC
Sbjct: 104 MITGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCRGR-WVEEGRHLFDEMPERDC 162

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT+ISGY ++G M+EAL+LF+SM  RNVVSWNAM++GFLQNGDV  AIEFF RMP R
Sbjct: 163 VSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPER 222

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           DSASLSALV+GLIQNGELDEA R+L+    + D   DLV AYN L+ GYGQ GRV++AR+
Sbjct: 223 DSASLSALVAGLIQNGELDEAKRILLTTRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQ 282

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD+IP      +   RF+RN+VSWNSMIMCY KA D+ SAR +F+QM ERDT SWNTMI
Sbjct: 283 LFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMI 342

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           SGY+ + DMEEA  LF +MP+PDTLTWN+M+SG+AQ GNLELA   F  +PQKNLVSWNS
Sbjct: 343 SGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNS 402

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           MIAG E N DY+GA +L+ QM ++GEKPDRHT SS+LS+ SG   LHLGMQIHQ +TKTV
Sbjct: 403 MIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTV 462

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
           IPD+PINN+LITMY+RCGAIVEAR IF+E+KL K V+SWNAMIGG A HGFA +ALELF+
Sbjct: 463 IPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFE 522

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M+  KV PTYITFISVL+ACAHAG V+EGR HFKSM  E+GIEPRIEHFASLVDIVGRH
Sbjct: 523 LMKRLKVRPTYITFISVLNACAHAGXVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRH 582

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           G+LE+AMDLI  MPFEPDKAVWGALLGACRVHNNVELA+VAAEALMK+EPE+S P
Sbjct: 583 GQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAP 637



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 154/516 (29%), Positives = 251/516 (48%), Gaps = 61/516 (11%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D  T N  IS   + G + EA  LF++MP RN+V+WN+MI+G+++  ++A A + FD MP
Sbjct: 66  DLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMP 125

Query: 119 GRDSASLSALVSGLIQ-NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
            RD  S + ++SG +   G   E  R L       +  E    ++NT+I GY + GR++E
Sbjct: 126 DRDVVSWNLMISGYVSCRGRWVEEGRHLFD-----EMPERDCVSWNTMISGYTRSGRMDE 180

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           A +LFD +             +RN+VSWN+M+  + + GDV  A E F +M ERD+ S +
Sbjct: 181 ALQLFDSMQ------------ERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLS 228

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPD------TLTWNAMVSGYAQIGNLELALDFFKRMP 291
            +++G I   +++EA  + +     D         +N +++GY Q G ++ A   F ++P
Sbjct: 229 ALVAGLIQNGELDEAKRILLTTRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIP 288

Query: 292 ------------QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
                       ++N+VSWNSMI      +D   A  LF QM+      +R T  S  +M
Sbjct: 289 FYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMK------ERDTI-SWNTM 341

Query: 340 SSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
            SG V +    +   +  +   PD    N++I+ +A+ G +  AR +F  +   KN+VSW
Sbjct: 342 ISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIP-QKNLVSW 400

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N+MI G  ++G    A EL++ M      P   T  SVLS C+    +  G Q  + +  
Sbjct: 401 NSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITK 460

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
              + P I    SL+ +  R G + +A  +   +  + +   W A++G    H       
Sbjct: 461 T--VIPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHG------ 512

Query: 520 VAAEAL--------MKVEPENSTPYVLLYNMYADVG 547
            AA+AL        +KV P   T ++ + N  A  G
Sbjct: 513 FAADALELFELMKRLKVRPTYIT-FISVLNACAHAG 547



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 99/232 (42%), Gaps = 12/232 (5%)

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           SIL   S    LH  +   Q    +V  D+   N  I+   R G I EAR +F+ M   +
Sbjct: 38  SILKNLSPPPHLHCFVSTLQQPKNSVSLDLYTPNKRISHLIRNGRINEARALFDAMP-QR 96

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           N+V+WN+MI G        +A +LF  M    V+ ++   IS   +C     VEEGR  F
Sbjct: 97  NIVTWNSMITGYVRRREMAKARKLFDEMPDRDVV-SWNLMISGYVSC-RGRWVEEGRHLF 154

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
             M     +      + +++    R GR+++A+ L   M  E +   W A++     + +
Sbjct: 155 DEMPERDCVS-----WNTMISGYTRSGRMDEALQLFDSMQ-ERNVVSWNAMVTGFLQNGD 208

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
           VE    A E  M++   +S     L       G  D+A  + L  +  +  K
Sbjct: 209 VER---AIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTTRRQDDDK 257


>gi|297837203|ref|XP_002886483.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297332324|gb|EFH62742.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1243

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/580 (62%), Positives = 461/580 (79%), Gaps = 4/580 (0%)

Query: 1    MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
            MISGYVKRREM +ARKLFDEMP+RDVV+WN MISGY+S  G  FLEEAR LFD MP RD 
Sbjct: 421  MISGYVKRREMTQARKLFDEMPERDVVTWNAMISGYVSCGGIRFLEEARKLFDEMPSRDS 480

Query: 61   VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
             +WNT+ISGYAK   + EAL LF  MP RN VSW+AMI+GF  NG+V  A + F RMP +
Sbjct: 481  FSWNTMISGYAKNRRISEALLLFEKMPERNAVSWSAMITGFCHNGEVNRAFDLFRRMPVK 540

Query: 121  DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
            DS+SL ALV+GLI+N  L+EAA VL + GS   G EDLV AYNTLIVGYGQRG+VE AR 
Sbjct: 541  DSSSLCALVAGLIKNERLEEAAWVLGQYGSLDSGREDLVYAYNTLIVGYGQRGQVEAARC 600

Query: 181  LFDKIPVNCDR----GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            LFD+IP  CD     G    RF+RN+VSWNSMI  Y K GDVVSAR +F+QM +RDT SW
Sbjct: 601  LFDQIPDLCDDDDHGGAFRERFRRNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISW 660

Query: 237  NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
            NTMI GY+HV  M++A  LF +MP+ D  +WN MVSGYA +GNLELA  +F++ P+KN+V
Sbjct: 661  NTMIDGYVHVSRMDDAFALFSEMPNRDAHSWNMMVSGYASVGNLELARHYFEKTPEKNIV 720

Query: 297  SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
            SWNS+IA  + NKDY+ A+ +FI+M ++GEKPD HT +S+LS+S+G+V+L LGMQ+HQ+V
Sbjct: 721  SWNSIIAAYDKNKDYKEAVDVFIRMNIDGEKPDPHTLTSLLSVSTGLVNLRLGMQMHQIV 780

Query: 357  TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
             KTVIPDVP++NALITMY+RCG I+E+R IF+EMKL + V++WNA+IGG A HG A+EAL
Sbjct: 781  VKTVIPDVPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAIIGGYAFHGNASEAL 840

Query: 417  ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
             LF SM+ + + P++ITF+SVL+ACAHAGLV+E ++ F SM++ Y IEP++EH++SLV++
Sbjct: 841  NLFWSMKCYGIHPSHITFVSVLNACAHAGLVDEAKEQFLSMMSVYKIEPQMEHYSSLVNV 900

Query: 477  VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
            +   G+ E+AM +IK MPFEPDK VWGALL ACR++NNV LA VAAEA+ ++EPE+STPY
Sbjct: 901  ISGQGQFEEAMYVIKSMPFEPDKTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPY 960

Query: 537  VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
            VLLYNMYAD+G WD+A++VR+ M+S  IKK  G SWVD S
Sbjct: 961  VLLYNMYADMGLWDEASQVRMNMESKRIKKERGSSWVDSS 1000



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 149/531 (28%), Positives = 248/531 (46%), Gaps = 68/531 (12%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N  ++   ++G + EA  +F  + ARN+V+WN MISG+++  ++  A + FD MP RD  
Sbjct: 388 NKELNQMIRSGYIAEAREIFEKLEARNIVTWNTMISGYVKRREMTQARKLFDEMPERDVV 447

Query: 124 SLSALVSGLIQNGE---LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           + +A++SG +  G    L+EA ++  +  SR         ++NT+I GY +  R+ EA  
Sbjct: 448 TWNAMISGYVSCGGIRFLEEARKLFDEMPSRDSF------SWNTMISGYAKNRRISEALL 501

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF+K+P            +RN VSW++MI  +   G+V  A ++F +M  +D+ S   ++
Sbjct: 502 LFEKMP------------ERNAVSWSAMITGFCHNGEVNRAFDLFRRMPVKDSSSLCALV 549

Query: 241 SGYIHVLDMEEASNLFVKMPHPDT------LTWNAMVSGYAQIGNLELALDFFKRMP--- 291
           +G I    +EEA+ +  +    D+        +N ++ GY Q G +E A   F ++P   
Sbjct: 550 AGLIKNERLEEAAWVLGQYGSLDSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLC 609

Query: 292 -------------QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
                        ++N+VSWNSMI       D   A  LF QM+      DR T  S  +
Sbjct: 610 DDDDHGGAFRERFRRNVVSWNSMIKAYLKVGDVVSARLLFDQMK------DRDTI-SWNT 662

Query: 339 MSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
           M  G V +        + ++    D    N +++ YA  G +  AR  FE+    KN+VS
Sbjct: 663 MIDGYVHVSRMDDAFALFSEMPNRDAHSWNMMVSGYASVGNLELARHYFEKTP-EKNIVS 721

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN++I     +    EA+++F  M      P   T  S+LS       +  G Q  + +V
Sbjct: 722 WNSIIAAYDKNKDYKEAVDVFIRMNIDGEKPDPHTLTSLLSVSTGLVNLRLGMQMHQIVV 781

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
               + P +    +L+ +  R G + ++  +   M  + +   W A++G    H N    
Sbjct: 782 KT--VIPDVPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAIIGGYAFHGN---- 835

Query: 519 QVAAEAL-----MK---VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
             A+EAL     MK   + P + T +V + N  A  G  D+A E  L M S
Sbjct: 836 --ASEALNLFWSMKCYGIHPSHIT-FVSVLNACAHAGLVDEAKEQFLSMMS 883


>gi|358346115|ref|XP_003637117.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503052|gb|AES84255.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 592

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/520 (68%), Positives = 442/520 (85%), Gaps = 5/520 (0%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+GYV+RRE+AKAR+LFDEMP RD+VSWN++ISGY S RGS F+EE R LFDIMP+RDC
Sbjct: 75  MITGYVQRREIAKARQLFDEMPLRDIVSWNLIISGYFSCRGSRFVEEGRKLFDIMPQRDC 134

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNTVISGYAK G M++A+ +F SMP RNVVS NA+++GFL NGDV +A+ FF +M  R
Sbjct: 135 VSWNTVISGYAKNGRMDQAIEIFESMPERNVVSCNAVVNGFLLNGDVDSAVGFFRKMGER 194

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           DSASLS LVSGL++NG+LD AA +LV+ G+  D  +DLV AYNTLI GYGQRG VEEAR 
Sbjct: 195 DSASLSGLVSGLVRNGKLDMAAEILVEYGNEGDEKDDLVYAYNTLIAGYGQRGMVEEARH 254

Query: 181 LFDKIPVNCDRGEGN---VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           +FD   V  D+GEGN    R KRN+VSWNSM+MCY KAGDVVSARE+F++M+ERD  SWN
Sbjct: 255 VFDG--VMSDQGEGNEGKRRLKRNVVSWNSMMMCYVKAGDVVSARELFDRMVERDACSWN 312

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           T+I GY+ + DMEEAS LF++MP PD L+WN+++SG++QIG+L+   +FF+ MP KNL+S
Sbjct: 313 TVIGGYVQIGDMEEASKLFLEMPIPDVLSWNSIISGFSQIGDLKRVKEFFENMPHKNLIS 372

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WNS+IAG E N+DY+GAI+LF QMQ++GE+PDRHT SSILS+S+G+VDL+LG QIHQ VT
Sbjct: 373 WNSVIAGYEKNEDYKGAIELFSQMQLKGERPDRHTLSSILSVSTGLVDLYLGKQIHQFVT 432

Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
           KTV+PD+PINN+LITMY+RCG I +AR +F EMKL K+V++WNAMIGG A HGFA +ALE
Sbjct: 433 KTVVPDLPINNSLITMYSRCGEIGDARHVFNEMKLYKDVITWNAMIGGYAFHGFAAQALE 492

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           LF+ M+  K+ PTYITFISVL+ACAHAGLVEEG++ F SM+N+YGIEPR+EHFASLVDI+
Sbjct: 493 LFERMKGLKIQPTYITFISVLNACAHAGLVEEGKRQFNSMINDYGIEPRVEHFASLVDIL 552

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517
           GR G+L++AMDLI  MP +PDKAVWGALLGACRVH+NV+L
Sbjct: 553 GRQGQLQEAMDLIVNMPVKPDKAVWGALLGACRVHSNVDL 592


>gi|297744558|emb|CBI37820.3| unnamed protein product [Vitis vinifera]
          Length = 504

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/504 (71%), Positives = 423/504 (83%)

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN 135
           M+EAL+LF+SM  RNVVSWNAM++GFLQNGDV  AIEFF RMP RDSASLSALV+GLIQN
Sbjct: 1   MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQN 60

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           GELDEA R+L+    + D   DLV AYN L+ GYGQ GRV++AR+LFD+IP      +  
Sbjct: 61  GELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDG 120

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
            RF+RN+VSWNSMIMCY KA D+ SAR +F+QM ERDT SWNTMISGY+ + DMEEA  L
Sbjct: 121 GRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWML 180

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           F +MP+PDTLTWN+M+SG+AQ GNLELA   F  +PQKNLVSWNSMIAG E N DY+GA 
Sbjct: 181 FQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGAT 240

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYA 375
           +L+ QM ++GEKPDRHT SS+LS+ SG   LHLGMQIHQ +TKTVIPD+PINN+LITMY+
Sbjct: 241 ELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPDIPINNSLITMYS 300

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           RCGAIVEAR IF+E+KL K V+SWNAMIGG A HGFA +ALELF+ M+  KV PTYITFI
Sbjct: 301 RCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFI 360

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           SVL+ACAHAG V+EGR HFKSM  E+GIEPRIEHFASLVDIVGRHG+LE+AMDLI  MPF
Sbjct: 361 SVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPF 420

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           EPDKAVWGALLGACRVHNNVELA+VAAEALMK+EPE+S PYVLL+NMYADVG+WD+A E+
Sbjct: 421 EPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYVLLHNMYADVGQWDNATEM 480

Query: 556 RLLMKSNNIKKPTGYSWVDFSPCG 579
           R++M+ NNI+K  GYSWVD S  G
Sbjct: 481 RMMMERNNIRKQPGYSWVDSSHSG 504



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 217/437 (49%), Gaps = 49/437 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD- 59
           M++G+++  ++ +A + F  MP+RD  S + +++G I    +G L+EA+ +      +D 
Sbjct: 22  MVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQ---NGELDEAKRILLTSRRQDD 78

Query: 60  -----CVTWNTVISGYAKTGEMEEALRLFNSMP------------ARNVVSWNAMISGFL 102
                   +N +++GY + G +++A +LF+ +P             RNVVSWN+MI  ++
Sbjct: 79  DKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYV 138

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
           +  D+ +A   FD+M  RD+ S + ++SG ++  +++EA  +  +  +      D +  +
Sbjct: 139 KARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPN-----PDTL-TW 192

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N++I G+ Q+G +E AR LF  IP            ++N+VSWNSMI  Y   GD   A 
Sbjct: 193 NSMISGFAQKGNLELARALFATIP------------QKNLVSWNSMIAGYENNGDYKGAT 240

Query: 223 EIFEQML------ERDTFSWN-TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
           E++ QML      +R T S   ++ SG+  +    +      K   PD    N++++ Y+
Sbjct: 241 ELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPDIPINNSLITMYS 300

Query: 276 QIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
           + G +  A   F  +  QK ++SWN+MI G   +     A++LF  M+    +P   TF 
Sbjct: 301 RCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFI 360

Query: 335 SILSMSSGIVDLHLG-MQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKL 392
           S+L+  +    +  G M    M  +  I P +    +L+ +  R G + EA  +   M  
Sbjct: 361 SVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPF 420

Query: 393 LKNVVSWNAMIGGCASH 409
             +   W A++G C  H
Sbjct: 421 EPDKAVWGALLGACRVH 437



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 183/385 (47%), Gaps = 71/385 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMP------------QRDVVSWNVMISGYISSRGSGFLEEA 48
           +++GY +   + KAR+LFD++P            +R+VVSWN MI  Y+ +R    +  A
Sbjct: 90  LLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARD---IFSA 146

Query: 49  RYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVA 108
           R LFD M ERD ++WNT+ISGY +  +MEEA  LF  MP  + ++WN+MISGF Q G++ 
Sbjct: 147 RVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLE 206

Query: 109 NAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV---------------LVKCGSRCD 153
            A   F  +P ++  S +++++G   NG+   A  +               L    S C 
Sbjct: 207 LARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCS 266

Query: 154 GGEDL-----------------VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
           G   L                 +   N+LI  Y + G + EAR +FD+           V
Sbjct: 267 GFAALHLGMQIHQQITKTVIPDIPINNSLITMYSRCGAIVEARTIFDE-----------V 315

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE---RDTF-SWNTMISGYIHVLDMEEA 252
           + ++ ++SWN+MI  YA  G    A E+FE M     R T+ ++ ++++   H   ++E 
Sbjct: 316 KLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEG 375

Query: 253 SNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCE 306
              F  M       P    + ++V    + G LE A+D    MP + +   W +++  C 
Sbjct: 376 RMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACR 435

Query: 307 TNKDYE---GAIKLFIQMQVEGEKP 328
            + + E    A +  ++++ E   P
Sbjct: 436 VHNNVELARVAAEALMKLEPESSAP 460


>gi|15220741|ref|NP_176416.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
 gi|75097094|sp|O04590.1|PPR88_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62260, mitochondrial; Flags: Precursor
 gi|2160154|gb|AAB60776.1| F19K23.18 gene product [Arabidopsis thaliana]
 gi|332195821|gb|AEE33942.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
          Length = 656

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/579 (62%), Positives = 454/579 (78%), Gaps = 3/579 (0%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGYVKRREM +ARKLFD MP+RDVV+WN MISGY+S  G  FLEEAR LFD MP RD 
Sbjct: 77  MISGYVKRREMNQARKLFDVMPKRDVVTWNTMISGYVSCGGIRFLEEARKLFDEMPSRDS 136

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WNT+ISGYAK   + EAL LF  MP RN VSW+AMI+GF QNG+V +A+  F +MP +
Sbjct: 137 FSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVK 196

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           DS+ L ALV+GLI+N  L EAA VL + GS   G EDLV AYNTLIVGYGQRG+VE AR 
Sbjct: 197 DSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARC 256

Query: 181 LFDKIPVNCDR---GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           LFD+IP  C     GE   RF +N+VSWNSMI  Y K GDVVSAR +F+QM +RDT SWN
Sbjct: 257 LFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWN 316

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           TMI GY+HV  ME+A  LF +MP+ D  +WN MVSGYA +GN+ELA  +F++ P+K+ VS
Sbjct: 317 TMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVS 376

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WNS+IA  E NKDY+ A+ LFI+M +EGEKPD HT +S+LS S+G+V+L LGMQ+HQ+V 
Sbjct: 377 WNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVV 436

Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
           KTVIPDVP++NALITMY+RCG I+E+R IF+EMKL + V++WNAMIGG A HG A+EAL 
Sbjct: 437 KTVIPDVPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALN 496

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           LF SM+S  + P++ITF+SVL+ACAHAGLV+E +  F SM++ Y IEP++EH++SLV++ 
Sbjct: 497 LFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNVT 556

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
              G+ E+AM +I  MPFEPDK VWGALL ACR++NNV LA VAAEA+ ++EPE+STPYV
Sbjct: 557 SGQGQFEEAMYIITSMPFEPDKTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPYV 616

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           LLYNMYAD+G WD+A++VR+ M+S  IKK  G SWVD S
Sbjct: 617 LLYNMYADMGLWDEASQVRMNMESKRIKKERGSSWVDSS 655



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 169/400 (42%), Gaps = 84/400 (21%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N MI    ++G +  AR+IFE++  R+T +WNTMISGY+   +M +A  LF  MP  D +
Sbjct: 48  NQMI----RSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVV 103

Query: 266 TWNAMVSGYAQIGNLEL----------------------------------ALDFFKRMP 291
           TWN M+SGY   G +                                    AL  F++MP
Sbjct: 104 TWNTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMP 163

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH---- 347
           ++N VSW++MI G   N + + A+ LF +M V+   P       + ++ +G++       
Sbjct: 164 ERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSP-------LCALVAGLIKNERLSE 216

Query: 348 ----LGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM------------- 390
               LG Q   +V+      V   N LI  Y + G +  AR +F+++             
Sbjct: 217 AAWVLG-QYGSLVSGRE-DLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFR 274

Query: 391 -KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
            +  KNVVSWN+MI      G    A  LF  M+        I++ +++    H   +E+
Sbjct: 275 ERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDT----ISWNTMIDGYVHVSRMED 330

Query: 450 GRQHFKSMVNE--YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
               F  M N   +     +  +AS+       G +E A    +  P E     W +++ 
Sbjct: 331 AFALFSEMPNRDAHSWNMMVSGYASV-------GNVELARHYFEKTP-EKHTVSWNSIIA 382

Query: 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
           A   + + + A V     M +E E   P+ L   + A  G
Sbjct: 383 AYEKNKDYKEA-VDLFIRMNIEGEKPDPHTLTSLLSASTG 421


>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Brachypodium distachyon]
          Length = 676

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 301/580 (51%), Positives = 404/580 (69%), Gaps = 12/580 (2%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           ++   + R++A AR  F  MP RD VSWN +++ Y  S  S  L  AR LFD MP+RD V
Sbjct: 68  LAALARGRDVAAARAFFASMPVRDAVSWNTLLAAYSRSLNSEHLAAARRLFDEMPQRDAV 127

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           TWNT++  Y + G M EA +LF+ MP RNV SWN M++GF   G V  A++ FD MP +D
Sbjct: 128 TWNTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKALDMFDAMPVKD 187

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           SASL  LVSG I+NG L EA  +L K   R    ++ V AYNTLI  YGQ GRV +AR+L
Sbjct: 188 SASLGTLVSGFIKNGRLHEAEELLTK-RLRVTDMDEAVDAYNTLIAAYGQVGRVSDARRL 246

Query: 182 FDKIPVNCDRGE-----GNVR-FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
           FD IP    RG+      N+R F RN+VSWNSM+ CY + GDV SAREIF +M ++D  S
Sbjct: 247 FDMIP----RGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNEMPDKDLVS 302

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           WNTMI+GY  V DMEEA  LF +MP PD ++WN ++ G+ Q G++E A  FF RMP++  
Sbjct: 303 WNTMIAGYTKVSDMEEAEKLFWEMPDPDIVSWNLIIRGFTQKGDVEHARGFFDRMPERGT 362

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           +SWN+MI+G E N  Y+GAI+LF +M   G  PDRHTFSS+L+  + +  L LG Q+HQ+
Sbjct: 363 ISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACASLPMLRLGAQLHQL 422

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
           + K+ +PD   +NAL+TMY+R GA+ +A  IF++M   K++VSWNA+IGG   HG ATEA
Sbjct: 423 IEKSFLPDTATSNALMTMYSRGGALTDAEAIFKQMP-QKDLVSWNALIGGYEHHGCATEA 481

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L+LF+ MRS +V+PT+ITFIS+LSAC +AGLV EG   F +M++EY I  RIEH+A+LV+
Sbjct: 482 LQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGWMVFDTMIHEYSIAARIEHYAALVN 541

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++GRHG+L+DA+++I  MP  PD++VWGA LGAC    N  LA +AA+AL K++PE+S P
Sbjct: 542 LIGRHGQLDDALEVINSMPIAPDRSVWGAFLGACTAKKNELLAHMAAKALSKIDPESSAP 601

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           YVL++N++A  GRW  A+ VR  M+   I K  GYSW+D 
Sbjct: 602 YVLIHNLHAHEGRWGSASVVREEMEQQGIHKHPGYSWIDL 641



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 143/470 (30%), Positives = 234/470 (49%), Gaps = 86/470 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  YV+R  M +A KLFDEMPQR+V SWN M++G+ S   +G + +A  +FD MP +D 
Sbjct: 132 LLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFS---AGQVNKALDMFDAMPVKDS 188

Query: 61  VT------------------------------------WNTVISGYAKTGEMEEALRLFN 84
            +                                    +NT+I+ Y + G + +A RLF+
Sbjct: 189 ASLGTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTLIAAYGQVGRVSDARRLFD 248

Query: 85  SMP--------------ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
            +P              ARNVVSWN+M++ +++ GDV +A E F+ MP +D  S + +++
Sbjct: 249 MIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNEMPDKDLVSWNTMIA 308

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           G  +  +++EA ++  +         D+V ++N +I G+ Q+G VE AR  FD++P    
Sbjct: 309 GYTKVSDMEEAEKLFWEMPD-----PDIV-SWNLIIRGFTQKGDVEHARGFFDRMP---- 358

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE------RDTFSWNTMISGYI 244
                   +R  +SWN+MI  Y + G    A E+F +MLE      R TFS        +
Sbjct: 359 --------ERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACASL 410

Query: 245 HVLDM-EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
            +L +  +   L  K   PDT T NA+++ Y++ G L  A   FK+MPQK+LVSWN++I 
Sbjct: 411 PMLRLGAQLHQLIEKSFLPDTATSNALMTMYSRGGALTDAEAIFKQMPQKDLVSWNALIG 470

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM--SSGIVD---LHLGMQIHQMVTK 358
           G E +     A++LF  M+     P   TF S+LS   ++G+V    +     IH+    
Sbjct: 471 GYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGWMVFDTMIHEY--- 527

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           ++   +    AL+ +  R G + +A  +   M +  +   W A +G C +
Sbjct: 528 SIAARIEHYAALVNLIGRHGQLDDALEVINSMPIAPDRSVWGAFLGACTA 577



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 121/462 (26%), Positives = 201/462 (43%), Gaps = 79/462 (17%)

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
           ++LVR +N  +V   +RGR+  AR+LFD +P             R++V+WNS +   A+ 
Sbjct: 27  DELVRQHNRSLVALLRRGRLAAARRLFDALPA------------RSVVTWNSFLAALARG 74

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEE---ASNLFVKMPHPDTLTWNAMVS 272
            DV +AR  F  M  RD  SWNT+++ Y   L+ E    A  LF +MP  D +TWN ++ 
Sbjct: 75  RDVAAARAFFASMPVRDAVSWNTLLAAYSRSLNSEHLAAARRLFDEMPQRDAVTWNTLLG 134

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE------ 326
            Y + G +  A   F  MPQ+N+ SWN+M+ G  +      A+ +F  M V+        
Sbjct: 135 AYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKALDMFDAMPVKDSASLGTL 194

Query: 327 -----KPDR-HTFSSILSMSSGIVDLHLGMQIHQMVTKT---------------VIP--- 362
                K  R H    +L+    + D+   +  +  +                  +IP   
Sbjct: 195 VSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTLIAAYGQVGRVSDARRLFDMIPRGQ 254

Query: 363 -------------DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
                        +V   N+++T Y R G +  AR IF EM   K++VSWN MI G    
Sbjct: 255 YQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNEMP-DKDLVSWNTMIAGYTKV 313

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
               EA +LF  M      P  +++  ++      G VE  R  F  M     I      
Sbjct: 314 SDMEEAEKLFWEMPD----PDIVSWNLIIRGFTQKGDVEHARGFFDRMPERGTIS----- 364

Query: 470 FASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNVELAQVAAEALM 526
           + +++    ++G  + A++L   M      PD+  + ++L AC    ++ + ++ A+   
Sbjct: 365 WNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAAC---ASLPMLRLGAQLHQ 421

Query: 527 KVE----PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
            +E    P+ +T   L+  MY+  G   DA  +   M   ++
Sbjct: 422 LIEKSFLPDTATSNALM-TMYSRGGALTDAEAIFKQMPQKDL 462


>gi|51535392|dbj|BAD37262.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51535558|dbj|BAD37476.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 908

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 301/580 (51%), Positives = 404/580 (69%), Gaps = 9/580 (1%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++G  +R +   AR+ FD MP RD VSWN +++ Y +S     L  AR LFD MP+RD 
Sbjct: 73  LLAGLARRPDARAAREFFDAMPVRDAVSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDV 132

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           VTWNT++  YA+ G M+EA RLF+ MP RN  SWN M++GF   G V  A++ FD MP +
Sbjct: 133 VTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAK 192

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           DSASLS +VSG  +NG L EA  +L K  S  D  +  V AYNTLIV YGQ GR  +A++
Sbjct: 193 DSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDM-DKAVDAYNTLIVAYGQAGRFSDAKR 251

Query: 181 LFDKIPV-----NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
           LFD IP      N  + +G   F+RN+VSWNSM++CY KAGDV SAR +F +M ++D  S
Sbjct: 252 LFDMIPKGQYQHNMLKRKG---FERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVS 308

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           WNTMISGY    DM+E+  LF +MP PDT++WN ++ G+ Q G  E A  FF RMP++  
Sbjct: 309 WNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGT 368

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           +SWN+MI+G E N +Y  ++KLF +M   GE PDRHTFSS+L+  + I  L LG QIHQ+
Sbjct: 369 ISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQL 428

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
           V K+ +PD  I+NALITMY+RCGA+ +A  IF++M   K++VSWNA+IG    HG AT+A
Sbjct: 429 VEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKA 488

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L+LFK MR  KV+PT+ITF+S+LSAC +AGLV EGR  F +MV+EYGI  RIEH+A+LV+
Sbjct: 489 LQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVN 548

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++GRHG+L+DA+++I  MP  PD++VWGA LGAC    N  LAQ+AA+ L  + P++S P
Sbjct: 549 LIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMAAKELSTINPDSSAP 608

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           YVL++N++A  G+W  A  VR  M+   I K  GYSW+D 
Sbjct: 609 YVLIHNLHAHEGKWGSAAVVREEMERQGIYKQPGYSWIDL 648



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 144/302 (47%), Gaps = 41/302 (13%)

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
           +DLV  +N  +    + GR   AR+LFD +P             R++V+WNS++   A+ 
Sbjct: 33  DDLVMRHNRSLAALLRAGRYGAARRLFDALPA------------RSVVTWNSLLAGLARR 80

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGY---IHVLDMEEASNLFVKMPHPDTLTWNAMVS 272
            D  +ARE F+ M  RD  SWNT+++ Y    H   +  A  LF +MP  D +TWN ++ 
Sbjct: 81  PDARAAREFFDAMPVRDAVSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLG 140

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
            YA+ G ++ A   F  MPQ+N  SWN+M+ G         A+ +F  M  +        
Sbjct: 141 AYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDS------ 194

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTV-IPD----VPINNALITMYARCGAIVEARIIF 387
            +S+ +M SG     +  +  +++TK + + D    V   N LI  Y + G   +A+ +F
Sbjct: 195 -ASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLF 253

Query: 388 E-------EMKLLK------NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           +       +  +LK      NVVSWN+M+      G    A  LF  M   K L ++ T 
Sbjct: 254 DMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPD-KDLVSWNTM 312

Query: 435 IS 436
           IS
Sbjct: 313 IS 314


>gi|413952592|gb|AFW85241.1| hypothetical protein ZEAMMB73_384525 [Zea mays]
          Length = 683

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 291/577 (50%), Positives = 402/577 (69%), Gaps = 3/577 (0%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++   +  ++  AR  FD MP RD++SWN ++S Y  S     L  AR LF  MP+RD 
Sbjct: 73  LLAALSRGSDVRAARCFFDAMPVRDIISWNTLLSAYARSLQPNDLAAARRLFYEMPQRDA 132

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W+T++  Y + G MEEA RLF+ MP RN  SWN MI+GF   G +  A+  F  MP +
Sbjct: 133 VSWSTLLGAYTRRGLMEEAQRLFDEMPHRNASSWNTMITGFFAVGQMRKALNVFAAMPDK 192

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           DSASLSA+VSG I+NG L EA  +L K  +  D  +  V A+NTLI  YGQ GRV +AR+
Sbjct: 193 DSASLSAMVSGFIRNGRLHEADDLLTKRLTVMDM-DKAVGAFNTLIAAYGQTGRVTDARR 251

Query: 181 LFDKIPVNCDRGEGNVR--FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT 238
           LF  IP   ++ +G+ R  F+RN+VSWNSM+MCY + GDV SAR +F++M  +D  SWNT
Sbjct: 252 LFSMIPKTQNQHKGHKRMVFERNVVSWNSMMMCYIRTGDVCSARALFDEMPHKDLVSWNT 311

Query: 239 MISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
           MI+GY    +MEEA  LF ++P PD +TWN M+ G+ Q G++E A  FF RMP+++ ++W
Sbjct: 312 MIAGYTQASEMEEAEKLFWEVPDPDAVTWNLMIRGFTQKGDVEHARGFFDRMPERSTITW 371

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           N+MI+G E N+DY+  IKLF +M   GE+PD HT SS+L+  + +  L LG Q+HQ++ K
Sbjct: 372 NTMISGYEQNEDYDSTIKLFQRMLEVGERPDHHTLSSVLAACASLAMLRLGAQLHQLIEK 431

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
           + +PD   NNAL+TMY+RCG ++ A+ IF  M   +++VSWNA+IGG    G ATEAL L
Sbjct: 432 SFLPDTATNNALMTMYSRCGELISAKAIFGHMHTQRDIVSWNALIGGYEQQGNATEALRL 491

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F+ MRS KV+PT+ITFIS+LSAC +AGLV EGR  F +MV++YG+   +EH+A+LV+++G
Sbjct: 492 FEEMRSAKVMPTHITFISLLSACGNAGLVSEGRVVFHTMVHDYGLAASVEHYAALVNLIG 551

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           RHG+LEDA++LIK MP  PD+AVWGA LGAC    N  LA++AA AL K++P++S PYVL
Sbjct: 552 RHGQLEDALELIKSMPIAPDRAVWGAFLGACTAKKNEPLAEMAANALSKIDPDSSAPYVL 611

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           ++N++A  GRW  A+ VR  M+   I K  GYSW+D 
Sbjct: 612 MHNLHAHEGRWGSASLVREDMERLGIHKHPGYSWIDL 648



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 147/309 (47%), Gaps = 41/309 (13%)

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
           G   D  + LVR +N  +VG  +RGR   AR+LFD +P             R++V+WNS+
Sbjct: 26  GVAADHADGLVRQHNRSLVGLLRRGRFSAARRLFDALPA------------RSVVTWNSL 73

Query: 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL---DMEEASNLFVKMPHPDTL 265
           +   ++  DV +AR  F+ M  RD  SWNT++S Y   L   D+  A  LF +MP  D +
Sbjct: 74  LAALSRGSDVRAARCFFDAMPVRDIISWNTLLSAYARSLQPNDLAAARRLFYEMPQRDAV 133

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           +W+ ++  Y + G +E A   F  MP +N  SWN+MI G         A+ +F  M    
Sbjct: 134 SWSTLLGAYTRRGLMEEAQRLFDEMPHRNASSWNTMITGFFAVGQMRKALNVFAAM---- 189

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-----PDVPINNALITMYARCGAI 380
             PD+ + +S+ +M SG +      +   ++TK +        V   N LI  Y + G +
Sbjct: 190 --PDKDS-ASLSAMVSGFIRNGRLHEADDLLTKRLTVMDMDKAVGAFNTLIAAYGQTGRV 246

Query: 381 VEARIIF-------------EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
            +AR +F             + M   +NVVSWN+M+      G    A  LF  M   K 
Sbjct: 247 TDARRLFSMIPKTQNQHKGHKRMVFERNVVSWNSMMMCYIRTGDVCSARALFDEM-PHKD 305

Query: 428 LPTYITFIS 436
           L ++ T I+
Sbjct: 306 LVSWNTMIA 314


>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
 gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
          Length = 695

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 301/580 (51%), Positives = 404/580 (69%), Gaps = 9/580 (1%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++G  +R +   AR+ FD MP RD VSWN +++ Y +S     L  AR LFD MP+RD 
Sbjct: 37  LLAGLARRPDARAAREFFDAMPVRDAVSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDV 96

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           VTWNT++  YA+ G M+EA RLF+ MP RN  SWN M++GF   G V  A++ FD MP +
Sbjct: 97  VTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAK 156

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           DSASLS +VSG  +NG L EA  +L K  S  D  +  V AYNTLIV YGQ GR  +A++
Sbjct: 157 DSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDM-DKAVDAYNTLIVAYGQAGRFSDAKR 215

Query: 181 LFDKIPV-----NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
           LFD IP      N  + +G   F+RN+VSWNSM++CY KAGDV SAR +F +M ++D  S
Sbjct: 216 LFDMIPKGQYQHNMLKRKG---FERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVS 272

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           WNTMISGY    DM+E+  LF +MP PDT++WN ++ G+ Q G  E A  FF RMP++  
Sbjct: 273 WNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGT 332

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           +SWN+MI+G E N +Y  ++KLF +M   GE PDRHTFSS+L+  + I  L LG QIHQ+
Sbjct: 333 ISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQL 392

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
           V K+ +PD  I+NALITMY+RCGA+ +A  IF++M   K++VSWNA+IG    HG AT+A
Sbjct: 393 VEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKA 452

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L+LFK MR  KV+PT+ITF+S+LSAC +AGLV EGR  F +MV+EYGI  RIEH+A+LV+
Sbjct: 453 LQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVN 512

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++GRHG+L+DA+++I  MP  PD++VWGA LGAC    N  LAQ+AA+ L  + P++S P
Sbjct: 513 LIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMAAKELSTINPDSSAP 572

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           YVL++N++A  G+W  A  VR  M+   I K  GYSW+D 
Sbjct: 573 YVLIHNLHAHEGKWGSAAVVREEMERQGIYKQPGYSWIDL 612



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 140/296 (47%), Gaps = 41/296 (13%)

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +N  +    + GR   AR+LFD +P             R++V+WNS++   A+  D  +A
Sbjct: 3   HNRSLAALLRAGRYGAARRLFDALPA------------RSVVTWNSLLAGLARRPDARAA 50

Query: 222 REIFEQMLERDTFSWNTMISGYI---HVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
           RE F+ M  RD  SWNT+++ Y    H   +  A  LF +MP  D +TWN ++  YA+ G
Sbjct: 51  REFFDAMPVRDAVSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRG 110

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
            ++ A   F  MPQ+N  SWN+M+ G         A+ +F  M  +         +S+ +
Sbjct: 111 LMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDS-------ASLST 163

Query: 339 MSSGIVDLHLGMQIHQMVTKTV-IPD----VPINNALITMYARCGAIVEARIIFE----- 388
           M SG     +  +  +++TK + + D    V   N LI  Y + G   +A+ +F+     
Sbjct: 164 MVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKG 223

Query: 389 --EMKLLK------NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
             +  +LK      NVVSWN+M+      G    A  LF  M   K L ++ T IS
Sbjct: 224 QYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPD-KDLVSWNTMIS 278


>gi|242092520|ref|XP_002436750.1| hypothetical protein SORBIDRAFT_10g008110 [Sorghum bicolor]
 gi|241914973|gb|EER88117.1| hypothetical protein SORBIDRAFT_10g008110 [Sorghum bicolor]
          Length = 672

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 289/576 (50%), Positives = 396/576 (68%), Gaps = 14/576 (2%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           ++   +RR++  AR  FD MP RD++SWN +++ Y  S     L  AR LFD MP+RD V
Sbjct: 74  LAALSRRRDVRAARSFFDAMPMRDIISWNTLLAAYARSLQPDHLAAARRLFDEMPQRDAV 133

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           +W+T++  Y + G MEEA RLF+ MP RN  SWN M++GF   G +  A+  F+ MP +D
Sbjct: 134 SWSTLLGAYTRRGLMEEAQRLFDEMPHRNPASWNTMVTGFFAIGQMRKALNVFEAMPVKD 193

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           SASLSA+VSG I+NG L EA  +L K   R    +  V A+NTLI  YGQ GRV +AR+L
Sbjct: 194 SASLSAMVSGFIRNGWLHEADELLTK-RLRAMDMDKAVDAFNTLIAAYGQTGRVTDARRL 252

Query: 182 FDKIPVNCDRGEGNVR--FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           F  IP    + +G+ R  F+RN+VSWNSM+MCY + GDV SAR +F++M  +D  +WNTM
Sbjct: 253 FSMIPKTQSQHKGHKRRVFERNVVSWNSMMMCYIRTGDVCSARALFDEMPFKDLVTWNTM 312

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           I+GY    DMEEA  LF ++P PD +TWN M+ G+ Q G++E A  FF RMP+++ ++WN
Sbjct: 313 IAGYTQASDMEEAEKLFGEVPAPDAVTWNLMIRGFTQKGDVEHARGFFDRMPEQSTITWN 372

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           +MI+G E N+DY+  IKLF +M              +L+  + +  L LG Q+HQ++ K+
Sbjct: 373 TMISGYEQNEDYDCTIKLFQRM-----------LEVVLAACASLAMLRLGAQLHQLIEKS 421

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
            +PD   NNAL+TMY+RCG +  A+ IF +M   K++VSWNA+IGG   HG ATEAL LF
Sbjct: 422 FLPDTATNNALMTMYSRCGELTSAKAIFSQMHTQKDLVSWNALIGGYEHHGNATEALRLF 481

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           + MRS KV+PT+ITFIS+LSAC +AGLV EG+  F +MV+EYG+ PR+EH+A+LV+++GR
Sbjct: 482 QEMRSAKVMPTHITFISLLSACGNAGLVSEGQVVFHTMVHEYGLAPRVEHYAALVNLIGR 541

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
           HG+LEDA+++IK MP  PD+AVWGA LGAC    N  LA VAA AL K++PE+S PYVL+
Sbjct: 542 HGQLEDALEVIKSMPIAPDRAVWGAFLGACTAKKNEVLAAVAANALSKIDPESSAPYVLM 601

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           +N++A  GRW  A+ VR  M+   I K  GYSW+D 
Sbjct: 602 HNLHAHEGRWGSASVVREDMERLGIHKHPGYSWIDL 637



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/465 (27%), Positives = 224/465 (48%), Gaps = 86/465 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y +R  M +A++LFDEMP R+  SWN M++G+ +    G + +A  +F+ MP +D 
Sbjct: 138 LLGAYTRRGLMEEAQRLFDEMPHRNPASWNTMVTGFFA---IGQMRKALNVFEAMPVKDS 194

Query: 61  VT------------------------------------WNTVISGYAKTGEMEEALRLFN 84
            +                                    +NT+I+ Y +TG + +A RLF+
Sbjct: 195 ASLSAMVSGFIRNGWLHEADELLTKRLRAMDMDKAVDAFNTLIAAYGQTGRVTDARRLFS 254

Query: 85  SMPA--------------RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
            +P               RNVVSWN+M+  +++ GDV +A   FD MP +D  + + +++
Sbjct: 255 MIPKTQSQHKGHKRRVFERNVVSWNSMMMCYIRTGDVCSARALFDEMPFKDLVTWNTMIA 314

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           G  Q  +++EA ++  +  +      D V  +N +I G+ Q+G VE AR  FD++P    
Sbjct: 315 GYTQASDMEEAEKLFGEVPA-----PDAV-TWNLMIRGFTQKGDVEHARGFFDRMP---- 364

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM- 249
                   +++ ++WN+MI  Y +  D     ++F++MLE        ++      L M 
Sbjct: 365 --------EQSTITWNTMISGYEQNEDYDCTIKLFQRMLE--------VVLAACASLAML 408

Query: 250 ---EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRM-PQKNLVSWNSMIAGC 305
               +   L  K   PDT T NA+++ Y++ G L  A   F +M  QK+LVSWN++I G 
Sbjct: 409 RLGAQLHQLIEKSFLPDTATNNALMTMYSRCGELTSAKAIFSQMHTQKDLVSWNALIGGY 468

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI-HQMVTKT-VIPD 363
           E + +   A++LF +M+     P   TF S+LS       +  G  + H MV +  + P 
Sbjct: 469 EHHGNATEALRLFQEMRSAKVMPTHITFISLLSACGNAGLVSEGQVVFHTMVHEYGLAPR 528

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           V    AL+ +  R G + +A  + + M +  +   W A +G C +
Sbjct: 529 VEHYAALVNLIGRHGQLEDALEVIKSMPIAPDRAVWGAFLGACTA 573



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 166/346 (47%), Gaps = 41/346 (11%)

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP-------------------VNCDRGE 193
           D  + LVR +N  ++G  +RGR   AR+LFD +P                   V   R  
Sbjct: 30  DQADSLVRQHNRSLMGLLRRGRFSAARRLFDALPARSVVTWNSFLAALSRRRDVRAARSF 89

Query: 194 GNVRFKRNIVSWNSMIMCYAKA---GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDME 250
            +    R+I+SWN+++  YA++     + +AR +F++M +RD  SW+T++  Y     ME
Sbjct: 90  FDAMPMRDIISWNTLLAAYARSLQPDHLAAARRLFDEMPQRDAVSWSTLLGAYTRRGLME 149

Query: 251 EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
           EA  LF +MPH +  +WN MV+G+  IG +  AL+ F+ MP K+  S ++M++G   N  
Sbjct: 150 EAQRLFDEMPHRNPASWNTMVTGFFAIGQMRKALNVFEAMPVKDSASLSAMVSGFIRNGW 209

Query: 311 YEGAIKLFIQMQVEGEKPDR--HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP------ 362
              A +L  + ++     D+    F+++++       +    ++  M+ KT         
Sbjct: 210 LHEADELLTK-RLRAMDMDKAVDAFNTLIAAYGQTGRVTDARRLFSMIPKTQSQHKGHKR 268

Query: 363 -----DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
                +V   N+++  Y R G +  AR +F+EM   K++V+WN MI G        EA +
Sbjct: 269 RVFERNVVSWNSMMMCYIRTGDVCSARALFDEMP-FKDLVTWNTMIAGYTQASDMEEAEK 327

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
           LF  + +    P  +T+  ++      G VE  R  F  M  +  I
Sbjct: 328 LFGEVPA----PDAVTWNLMIRGFTQKGDVEHARGFFDRMPEQSTI 369



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 158/320 (49%), Gaps = 34/320 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  Y++  ++  AR LFDEMP +D+V+WN MI+GY  +     +EEA  LF  +P  D 
Sbjct: 281 MMMCYIRTGDVCSARALFDEMPFKDLVTWNTMIAGYTQASD---MEEAEKLFGEVPAPDA 337

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           VTWN +I G+ + G++E A   F+ MP ++ ++WN MISG+ QN D    I+ F RM   
Sbjct: 338 VTWNLMIRGFTQKGDVEHARGFFDRMPEQSTITWNTMISGYEQNEDYDCTIKLFQRMLEV 397

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
             A+ ++L + L    +L +    L++     D   +     N L+  Y + G +  A+ 
Sbjct: 398 VLAACASL-AMLRLGAQLHQ----LIEKSFLPDTATN-----NALMTMYSRCGELTSAKA 447

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSW 236
           +F ++             ++++VSWN++I  Y   G+   A  +F++M          ++
Sbjct: 448 IFSQMHT-----------QKDLVSWNALIGGYEHHGNATEALRLFQEMRSAKVMPTHITF 496

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
            +++S   +   + E   +F  M H     P    + A+V+   + G LE AL+  K MP
Sbjct: 497 ISLLSACGNAGLVSEGQVVFHTMVHEYGLAPRVEHYAALVNLIGRHGQLEDALEVIKSMP 556

Query: 292 -QKNLVSWNSMIAGCETNKD 310
              +   W + +  C   K+
Sbjct: 557 IAPDRAVWGAFLGACTAKKN 576


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 255/575 (44%), Positives = 372/575 (64%), Gaps = 23/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGY++  E   ARKLFDEMP+RD+VSWNVMI GY+ +R  G   +AR LF+IMPERD 
Sbjct: 101 MISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLG---KARELFEIMPERDV 157

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WNT++SGYA+ G +++A  +F+ MP +N VSWNA++S ++QN  +  A   F      
Sbjct: 158 CSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENW 217

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
              S + L+ G ++  ++ EA +       R     D+V ++NT+I GY Q G+++EAR+
Sbjct: 218 ALVSWNCLLGGFVKKKKIVEARQFFDSMNVR-----DVV-SWNTIITGYAQSGKIDEARQ 271

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD+ PV            +++ +W +M+  Y +   V  ARE+F++M ER+  SWN M+
Sbjct: 272 LFDESPV------------QDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAML 319

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    ME A  LF  MP  +  TWN M++GYAQ G +  A + F +MP+++ VSW +
Sbjct: 320 AGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAA 379

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKT 359
           MIAG   +     A++LF+QM+ EG + +R +FSS LS  + +V L LG Q+H ++V   
Sbjct: 380 MIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGG 439

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
                 + NAL+ MY +CG+I EA  +F+EM   K++VSWN MI G + HGF   AL  F
Sbjct: 440 YETGCFVGNALLLMYCKCGSIEEANDLFKEMAG-KDIVSWNTMIAGYSRHGFGEVALRFF 498

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           +SM+   + P   T ++VLSAC+H GLV++GRQ+F +M  +YG+ P  +H+A +VD++GR
Sbjct: 499 ESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGR 558

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G LEDA +L+K MPFEPD A+WG LLGA RVH N ELA+ AA+ +  +EPENS  YVLL
Sbjct: 559 AGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLL 618

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+YA  GRW D  ++R+ M+   +KK  GYSW++
Sbjct: 619 SNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 653



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 176/364 (48%), Gaps = 36/364 (9%)

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
           L+KCG      +  ++ +N  I  Y + GR  EA ++F ++P            + + VS
Sbjct: 56  LLKCG------DSDIKEWNVAISSYMRTGRCNEALRVFKRMP------------RWSSVS 97

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDT 264
           +N MI  Y + G+   AR++F++M ERD  SWN MI GY+   ++ +A  LF  MP  D 
Sbjct: 98  YNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDV 157

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
            +WN M+SGYAQ G ++ A   F RMP+KN VSWN++++    N   E A  LF      
Sbjct: 158 CSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF------ 211

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEAR 384
            +  +     S   +  G V     ++  Q      + DV   N +IT YA+ G I EAR
Sbjct: 212 -KSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEAR 270

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F+E   +++V +W AM+ G   +    EA ELF  M         +++ ++L+     
Sbjct: 271 QLFDESP-VQDVFTWTAMVSGYIQNRMVEEARELFDKMPE----RNEVSWNAMLAGYVQG 325

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
             +E  ++ F  M         +  + +++    + G++ +A +L   MP + D   W A
Sbjct: 326 ERMEMAKELFDVMPCR-----NVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAA 379

Query: 505 LLGA 508
           ++  
Sbjct: 380 MIAG 383


>gi|222635245|gb|EEE65377.1| hypothetical protein OsJ_20684 [Oryza sativa Japonica Group]
          Length = 769

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/464 (53%), Positives = 329/464 (70%), Gaps = 9/464 (1%)

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           MP +DSASLS +VSG  +NG L EA  +L K  S  D  +  V AYNTLIV YGQ GR  
Sbjct: 1   MPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDM-DKAVDAYNTLIVAYGQAGRFS 59

Query: 177 EARKLFDKIPV-----NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
           +A++LFD IP      N  + +G   F+RN+VSWNSM++CY KAGDV SAR +F +M ++
Sbjct: 60  DAKRLFDMIPKGQYQHNMLKRKG---FERNVVSWNSMMICYIKAGDVCSARALFNEMPDK 116

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           D  SWNTMISGY    DM+E+  LF +MP PDT++WN ++ G+ Q G  E A  FF RMP
Sbjct: 117 DLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMP 176

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           ++  +SWN+MI+G E N +Y  ++KLF +M   GE PDRHTFSS+L+  + I  L LG Q
Sbjct: 177 ERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQ 236

Query: 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           IHQ+V K+ +PD  I+NALITMY+RCGA+ +A  IF++M   K++VSWNA+IG    HG 
Sbjct: 237 IHQLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGR 296

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
           AT+AL+LFK MR  KV+PT+ITF+S+LSAC +AGLV EGR  F +MV+EYGI  RIEH+A
Sbjct: 297 ATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYA 356

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
           +LV+++GRHG+L+DA+++I  MP  PD++VWGA LGAC    N  LAQ+AA+ L  + P+
Sbjct: 357 ALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMAAKELSTINPD 416

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           +S PYVL++N++A  G+W  A  VR  M+   I K  GYSW+D 
Sbjct: 417 SSAPYVLIHNLHAHEGKWGSAAVVREEMERQGIYKQPGYSWIDL 460



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 123/423 (29%), Positives = 209/423 (49%), Gaps = 62/423 (14%)

Query: 21  MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVT--------WNTVISGYAK 72
           MP +D  S + M+SG+     +G L EA    +++ +R  VT        +NT+I  Y +
Sbjct: 1   MPAKDSASLSTMVSGFTK---NGMLHEAE---ELLTKRLSVTDMDKAVDAYNTLIVAYGQ 54

Query: 73  TGEMEEALRLFNSMPA--------------RNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
            G   +A RLF+ +P               RNVVSWN+M+  +++ GDV +A   F+ MP
Sbjct: 55  AGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMP 114

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
            +D  S + ++SG  Q  ++ E+ ++  +         D V ++N +I G+ Q+G  E A
Sbjct: 115 DKDLVSWNTMISGYTQASDMKESEKLFWEMPD-----PDTV-SWNLIIQGFMQKGEAEHA 168

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE------RD 232
           R  FD++P            +R  +SWN+MI  Y K G+ +S+ ++F +MLE      R 
Sbjct: 169 RGFFDRMP------------ERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRH 216

Query: 233 TFSWNTMISGYIHVLDM-EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRM- 290
           TFS        I +L +  +   L  K   PDT   NA+++ Y++ G L  A   FK+M 
Sbjct: 217 TFSSVLAACASIPMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMH 276

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIVD--- 345
            +K+LVSWN++I   E +     A++LF +M+     P   TF S+LS  +++G+V    
Sbjct: 277 TKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGR 336

Query: 346 LHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
           +     +H+     ++  +    AL+ +  R G + +A  +   M +  +   W A +G 
Sbjct: 337 MVFDTMVHEY---GIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGA 393

Query: 406 CAS 408
           C +
Sbjct: 394 CTA 396



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 170/366 (46%), Gaps = 70/366 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMP--------------QRDVVSWNVMISGYISSRGSGFLE 46
           +I  Y +    + A++LFD +P              +R+VVSWN M+  YI +   G + 
Sbjct: 48  LIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKA---GDVC 104

Query: 47  EARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGD 106
            AR LF+ MP++D V+WNT+ISGY +  +M+E+ +LF  MP  + VSWN +I GF+Q G+
Sbjct: 105 SARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGE 164

Query: 107 VANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR-------------------VLVK 147
             +A  FFDRMP R + S + ++SG  +NG    + +                   VL  
Sbjct: 165 AEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAA 224

Query: 148 CGSRCDGG-----EDLVRA--------YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           C S    G       LV           N LI  Y + G + +A  +F ++         
Sbjct: 225 CASIPMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHT------- 277

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDME 250
               K+++VSWN++I CY   G    A ++F++M          ++ +++S  ++   + 
Sbjct: 278 ----KKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVS 333

Query: 251 EASNLFVKMPHPDTLT-----WNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAG 304
           E   +F  M H   +      + A+V+   + G L+ AL+    MP     S W + +  
Sbjct: 334 EGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGA 393

Query: 305 CETNKD 310
           C   K+
Sbjct: 394 CTAKKN 399


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 254/576 (44%), Positives = 373/576 (64%), Gaps = 25/576 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGY++  E   AR LFDEMP+RD+VSWNVMI GY+ +R  G   +AR LF+ MPERD 
Sbjct: 96  MISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLG---KARELFERMPERDV 152

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WNT++SGYA+ G +++A R+F+ MP +N VSWNA++S ++QN  +  A   F      
Sbjct: 153 CSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENW 212

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
              S + L+ G ++  ++ EA +       R     D+V ++NT+I GY Q G ++EAR+
Sbjct: 213 ALVSWNCLLGGFVKKKKIVEARQFFDSMKVR-----DVV-SWNTIITGYAQNGEIDEARQ 266

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD+ PV+            ++ +W +M+  Y +   V  ARE+F++M ER+  SWN M+
Sbjct: 267 LFDESPVH------------DVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAML 314

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    +E A  LF  MP  +  TWN M++GYAQ G +  A + F +MP+++ VSW +
Sbjct: 315 AGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAA 374

Query: 301 MIAG-CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTK 358
           MIAG  ++   YE A++LF+ M+ EG + +R +FSS LS  + +V L LG Q+H ++V  
Sbjct: 375 MIAGYSQSGHSYE-ALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG 433

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
                  + NAL+ MY +CG+I EA  +F+EM   K++VSWN MI G + HGF  EAL  
Sbjct: 434 GYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG-KDIVSWNTMIAGYSRHGFGEEALRF 492

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F+SM+   + P   T ++VLSAC+H GLV++GRQ+F +M  +YG+ P  +H+A +VD++G
Sbjct: 493 FESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLG 552

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           R G LE+A +L+K MPFEPD A+WG LLGA RVH N ELA+ AA+ +  +EPENS  YVL
Sbjct: 553 RAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVL 612

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           L N+YA  GRW D  ++R+ M+   +KK  GYSW++
Sbjct: 613 LSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 648



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 173/354 (48%), Gaps = 30/354 (8%)

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
           G+  ++ +N  I  Y + GR  EA ++F ++P            + + VS+N+MI  Y +
Sbjct: 55  GDSDIKEWNVAISSYMRTGRCSEALRVFKRMP------------RWSSVSYNAMISGYLR 102

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
            G+   AR +F++M ERD  SWN MI GY+   ++ +A  LF +MP  D  +WN ++SGY
Sbjct: 103 NGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGY 162

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
           AQ G ++ A   F RMP+KN VSWN++++    N   E A  LF      G + +     
Sbjct: 163 AQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF------GSREN-WALV 215

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           S   +  G V     ++  Q      + DV   N +IT YA+ G I EAR +F+E   + 
Sbjct: 216 SWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESP-VH 274

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           +V +W AM+ G   +    EA ELF  M         +++ ++L+       VE  ++ F
Sbjct: 275 DVFTWTAMVSGYIQNRMVEEARELFDRMPE----RNEVSWNAMLAGYVQGERVEMAKELF 330

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
             M         +  + +++    + G++ +A +L   MP + D   W A++  
Sbjct: 331 DVMPCR-----NVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 378


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/575 (42%), Positives = 368/575 (64%), Gaps = 23/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISG +   +   AR+LF++MP RD+VSWNVMISG +  R    L  AR LFD MPERD 
Sbjct: 86  MISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRN---LRAARLLFDQMPERDV 142

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN ++SGYA+ G ++EA  +F+ MP +N +SWN M++ ++QNG + +A   F+     
Sbjct: 143 VSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADW 202

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S + ++ G ++   L +A  +  +   R     D V ++NT+I GY Q G + EA++
Sbjct: 203 ELISWNCMMGGYVKRNRLVDARGIFDRMPER-----DEV-SWNTMISGYAQNGELLEAQR 256

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF++ PV            R++ +W +M+  Y + G +  AR +F+ M E+++ SWN +I
Sbjct: 257 LFEESPV------------RDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAII 304

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    M++A  LF  MP  +  +WN M++GYAQ G++  A +FF RMPQ++ +SW +
Sbjct: 305 AGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAA 364

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           +IAG   +   E A+ LF++M+ +GE+ +R TF+S LS  + I  L LG Q+H  V K  
Sbjct: 365 IIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAG 424

Query: 361 IPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
           +     + NAL+ MY +CG I +A I+FE ++  K VVSWN MI G A HGF  EAL LF
Sbjct: 425 LESGCYVGNALLVMYCKCGNIDDAYIVFEGIEE-KEVVSWNTMIAGYARHGFGKEALMLF 483

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           +SM+   +LP  +T + VLSAC+H GLV++G ++F SM  +YGI    +H+  ++D++GR
Sbjct: 484 ESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGR 543

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRL+DA +L+K MPFEPD A WGALLGA R+H N EL + AA+ + ++EP+NS  YVLL
Sbjct: 544 AGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLL 603

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+YA  GRW D   +RL M+   +KK  GYSWV+
Sbjct: 604 SNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVE 638



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 171/352 (48%), Gaps = 31/352 (8%)

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D+V+ +N  I  + + G+ + A +LF+ +P            +R+ +SWN+MI       
Sbjct: 48  DIVK-WNIAITNHMRNGQCDSALRLFNSMP------------RRSSISWNAMISGCLSND 94

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQ 276
               AR++FE+M  RD  SWN MISG +   ++  A  LF +MP  D ++WNAM+SGYAQ
Sbjct: 95  KFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQ 154

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            G ++ A + F  MP KN +SWN M+A    N   E A +LF       E        S 
Sbjct: 155 NGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF-------ESKADWELISW 207

Query: 337 LSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
             M  G V  +  +    +  +    D    N +I+ YA+ G ++EA+ +FEE   +++V
Sbjct: 208 NCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESP-VRDV 266

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
            +W AM+ G   +G   EA  +F  M         +++ ++++       +++ R+ F++
Sbjct: 267 FTWTAMVSGYVQNGMLDEARRVFDGMPE----KNSVSWNAIIAGYVQCKRMDQARELFEA 322

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           M  +      +  + +++    ++G +  A +    MP + D   W A++  
Sbjct: 323 MPCQ-----NVSSWNTMITGYAQNGDIAQARNFFDRMP-QRDSISWAAIIAG 368


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/575 (41%), Positives = 366/575 (63%), Gaps = 23/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGY++  +   AR LFD+MP+RD+ SWNVM++GY+ +   G   +AR LFD+MPE+D 
Sbjct: 86  MISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLG---DARRLFDLMPEKDV 142

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN+++SGYA+ G ++EA  +F++MP +N +SWN +++ ++ NG +  A   F+     
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDW 202

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  S + L+ G ++  +L +A  +  K   R     D + ++NT+I GY Q G + +AR+
Sbjct: 203 DLISWNCLMGGFVRKKKLGDARWLFDKMPVR-----DAI-SWNTMISGYAQGGGLSQARR 256

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD+ P             R++ +W +M+  Y + G +  A+  F++M E++  S+N MI
Sbjct: 257 LFDESPT------------RDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMI 304

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    M+ A  LF  MP  +  +WN M++GY QIG++  A  FF  MPQ++ VSW +
Sbjct: 305 AGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAA 364

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKT 359
           +IAG   +  YE A+ +F++++ +GE  +R TF   LS  + I  L LG QIH Q V   
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMG 424

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
                 + NAL+ MY +CG+I EA   FE ++  K+VVSWN M+ G A HGF  +AL +F
Sbjct: 425 YGTGCFVGNALLAMYFKCGSIDEANDTFEGIEE-KDVVSWNTMLAGYARHGFGRQALTVF 483

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           +SM++  V P  IT + VLSAC+H GL++ G ++F SM  +YG+ P  +H+  ++D++GR
Sbjct: 484 ESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGR 543

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRLE+A DLI+ MPF+P  A WGALLGA R+H N EL + AAE + K+EP+NS  YVLL
Sbjct: 544 AGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLL 603

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+YA  GRW DA+++R  M+   ++K  GYSWV+
Sbjct: 604 SNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVE 638



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 163/347 (46%), Gaps = 30/347 (8%)

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +N  I  + + G  + A  +F+ +P            +R+ VS+N+MI  Y +      A
Sbjct: 52  WNKAISTHMRNGHCDSALHVFNTMP------------RRSSVSYNAMISGYLRNSKFNLA 99

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           R +F+QM ERD FSWN M++GY+    + +A  LF  MP  D ++WN+++SGYAQ G ++
Sbjct: 100 RNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVD 159

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A + F  MP+KN +SWN ++A    N   E A  LF        K D    S    M  
Sbjct: 160 EAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF------ESKSDWDLISWNCLMGG 213

Query: 342 GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
            +    LG     +  K  + D    N +I+ YA+ G + +AR +F+E    ++V +W A
Sbjct: 214 FVRKKKLG-DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESP-TRDVFTWTA 271

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           M+ G   +G   EA   F  M         +++ ++++       ++  R+ F+SM    
Sbjct: 272 MVSGYVQNGMLDEAKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCR- 326

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
                I  + +++   G+ G +  A      MP + D   W A++  
Sbjct: 327 ----NISSWNTMITGYGQIGDIAQARKFFDMMP-QRDCVSWAAIIAG 368



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           ++  PD L WN  +S + + G+ + AL  F  MP+++ VS+N+MI+G   N  +  A  L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARC 377
           F QM      P+R  FS  + ++  + +  LG    ++       DV   N+L++ YA+ 
Sbjct: 103 FDQM------PERDLFSWNVMLTGYVRNCRLG-DARRLFDLMPEKDVVSWNSLLSGYAQN 155

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           G + EAR +F+ M   KN +SWN ++     +G   EA  LF+S   + ++
Sbjct: 156 GYVDEAREVFDNMP-EKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLI 205



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 38/132 (28%)

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
           + GL++ G ++F  M  EY + P  +H+  ++D++GR  RLE+                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 503 GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
           GALLGA R+H N EL + AA+   K+ P+NS       +   DVG               
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSG-----ISKMRDVG--------------- 858

Query: 563 NIKKPTGYSWVD 574
            ++K  GYSW +
Sbjct: 859 -VQKVPGYSWFE 869


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/575 (41%), Positives = 366/575 (63%), Gaps = 23/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGY++  +   AR LFD+MP+RD+ SWNVM++GY+ +   G   +AR LFD+MPE+D 
Sbjct: 86  MISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLG---DARRLFDLMPEKDV 142

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN+++SGYA+ G ++EA  +F++MP +N +SWN +++ ++ NG +  A   F+     
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDW 202

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  S + L+ G ++  +L +A  +  K   R     D + ++NT+I GY Q G + +AR+
Sbjct: 203 DLISWNCLMGGFVRKKKLGDARWLFDKMPVR-----DAI-SWNTMISGYAQGGGLSQARR 256

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD+ P             R++ +W +M+  Y + G +  A+  F++M E++  S+N MI
Sbjct: 257 LFDESPT------------RDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMI 304

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    M+ A  LF  MP  +  +WN M++GY QIG++  A  FF  MPQ++ VSW +
Sbjct: 305 AGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAA 364

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKT 359
           +IAG   +  YE A+ +F++++ +GE  +R TF   LS  + I  L LG QIH Q V   
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMG 424

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
                 + NAL+ MY +CG+I EA   FE ++  K+VVSWN M+ G A HGF  +AL +F
Sbjct: 425 YGTGCFVGNALLAMYFKCGSIDEANDTFEGIEE-KDVVSWNTMLAGYARHGFGRQALTVF 483

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           +SM++  V P  IT + VLSAC+H GL++ G ++F SM  +YG+ P  +H+  ++D++GR
Sbjct: 484 ESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGR 543

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRLE+A DLI+ MPF+P  A WGALLGA R+H N EL + AAE + K+EP+NS  YVLL
Sbjct: 544 AGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLL 603

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+YA  GRW DA+++R  M+   ++K  GYSWV+
Sbjct: 604 SNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVE 638



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 163/347 (46%), Gaps = 30/347 (8%)

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +N  I  + + G  + A  +F+ +P            +R+ VS+N+MI  Y +      A
Sbjct: 52  WNKAISTHMRNGHCDSALHVFNTMP------------RRSSVSYNAMISGYLRNSKFNLA 99

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           R +F+QM ERD FSWN M++GY+    + +A  LF  MP  D ++WN+++SGYAQ G ++
Sbjct: 100 RNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVD 159

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A + F  MP+KN +SWN ++A    N   E A  LF        K D    S    M  
Sbjct: 160 EAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF------ESKSDWDLISWNCLMGG 213

Query: 342 GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
            +    LG     +  K  + D    N +I+ YA+ G + +AR +F+E    ++V +W A
Sbjct: 214 FVRKKKLG-DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESP-TRDVFTWTA 271

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           M+ G   +G   EA   F  M         +++ ++++       ++  R+ F+SM    
Sbjct: 272 MVSGYVQNGMLDEAKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCR- 326

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
                I  + +++   G+ G +  A      MP + D   W A++  
Sbjct: 327 ----NISSWNTMITGYGQIGDIAQARKFFDMMP-QRDCVSWAAIIAG 368



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           ++  PD L WN  +S + + G+ + AL  F  MP+++ VS+N+MI+G   N  +  A  L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARC 377
           F QM      P+R  FS  + ++  + +  LG    ++       DV   N+L++ YA+ 
Sbjct: 103 FDQM------PERDLFSWNVMLTGYVRNCRLG-DARRLFDLMPEKDVVSWNSLLSGYAQN 155

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           G + EAR +F+ M   KN +SWN ++     +G   EA  LF+S   + ++
Sbjct: 156 GYVDEAREVFDNMP-EKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLI 205


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/576 (40%), Positives = 362/576 (62%), Gaps = 23/576 (3%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GY K R+  +AR+LFD MP +D+VSWN M++GY  +   G +      F+ M ERD 
Sbjct: 146 MVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRN---GEMRLGLQFFEEMAERDV 202

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN ++ G+ + G++  +   F  +P  N VSW  M+ GF + G +A A   FD+MP R
Sbjct: 203 VSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIR 262

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  + +A+++  +QN  +DEA  + ++        E    ++ T+I GY + G+++EAR+
Sbjct: 263 NVVAWNAMIAAYVQNCHVDEAISLFMEMP------EKNSISWTTVINGYVRMGKLDEARQ 316

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           L +++P             RN+ +  +MI  Y +   +  AR+IF Q+  RD   WNTMI
Sbjct: 317 LLNQMPY------------RNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMI 364

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY     M+EA +LF +M   D ++WN MV+ YAQ+G ++ A+  F+ M +KN+VSWNS
Sbjct: 365 AGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNS 424

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT- 359
           +I+G   N  Y  A+K F+ M  EG+KPD+ TF+  LS  + +  L +G Q+HQ+V K+ 
Sbjct: 425 LISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSG 484

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              D+ ++NALITMYA+CG+I  A ++F+++    +VVSWN++I   A +G   EAL+LF
Sbjct: 485 YATDLFVSNALITMYAKCGSISSAELLFKDIDHF-DVVSWNSLIAAYALNGNGREALKLF 543

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M    V P  +TF+ +LSAC+H GL+++G + FK MV  Y IEP  EH+A +VD++GR
Sbjct: 544 HKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGR 603

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRLE+A  L++GM    +  +WGALLGACR+H N+ELA+ AAE L++ EP  ++ YVLL
Sbjct: 604 AGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLL 663

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
            NM A+ GRWD+   VR LMK    +K  G+SW++ 
Sbjct: 664 SNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIEL 699



 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/475 (31%), Positives = 258/475 (54%), Gaps = 45/475 (9%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           SG ++EA  +F  M  ++ VT N++IS +AK G + +A +LF+ MP RN+VSWN+MI+ +
Sbjct: 28  SGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAY 87

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL----VKCGSRCDGGED 157
           L N  V  A + FD+MP RD  S + +++   +NGEL +A  +      K    C     
Sbjct: 88  LHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNPVC----- 142

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
                N ++ GY +  + +EAR+LFD +P             +++VSWNSM+  Y + G+
Sbjct: 143 ----CNAMVAGYAKNRQFDEARRLFDAMPA------------KDLVSWNSMLTGYTRNGE 186

Query: 218 VVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQI 277
           +    + FE+M ERD  SWN M+ G++ V D+  +   F K+P+P+T++W  M+ G+A+ 
Sbjct: 187 MRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARF 246

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
           G +  A   F +MP +N+V+WN+MIA    N   + AI LF++M      P++++ S   
Sbjct: 247 GKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEM------PEKNSISWT- 299

Query: 338 SMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
           ++ +G V +    +  Q++ +    +V    A+I+ Y +   + +AR IF ++  +++VV
Sbjct: 300 TVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQIS-IRDVV 358

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
            WN MI G +  G   EAL LFK M    V    +++ +++++ A  G ++   + F+ M
Sbjct: 359 CWNTMIAGYSQCGRMDEALHLFKQM----VKKDIVSWNTMVASYAQVGQMDAAIKIFEEM 414

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGAC 509
                 E  I  + SL+  + ++G   DA+     M  E   PD++ +   L +C
Sbjct: 415 K-----EKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSC 464



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 204/434 (47%), Gaps = 63/434 (14%)

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +N  I   G+ G+++EA K+F  +              +N V+ NSMI  +AK G +  A
Sbjct: 18  HNLKITQLGKSGQIDEAIKVFQHMT------------HKNTVTHNSMISAFAKNGRISDA 65

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           R++F+ M +R+  SWN+MI+ Y+H   +EEA  LF KMP  D  +W  M++ Y + G L 
Sbjct: 66  RQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELA 125

Query: 282 LALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
            A + F  +P K N V  N+M+AG   N+ ++ A +LF  M  +    D  +++S+L+  
Sbjct: 126 KARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAK----DLVSWNSMLTGY 181

Query: 341 SGIVDLHLGMQ-IHQMVTKTVIP----------------------DVPINNAL--ITM-- 373
           +   ++ LG+Q   +M  + V+                        +P  N +  +TM  
Sbjct: 182 TRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLC 241

Query: 374 -YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
            +AR G I EAR +F++M  ++NVV+WNAMI     +    EA+ LF  M         I
Sbjct: 242 GFARFGKIAEARRLFDQMP-IRNVVAWNAMIAAYVQNCHVDEAISLFMEMPE----KNSI 296

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG--RHGRLEDAMDLI 490
           ++ +V++     G ++E RQ    M       P     A    I G  ++ R++DA  + 
Sbjct: 297 SWTTVINGYVRMGKLDEARQLLNQM-------PYRNVAAQTAMISGYVQNKRMDDARQIF 349

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
             +    D   W  ++        ++ A    + ++K   ++   +  +   YA VG+ D
Sbjct: 350 NQISIR-DVVCWNTMIAGYSQCGRMDEALHLFKQMVK---KDIVSWNTMVASYAQVGQMD 405

Query: 551 DANEVRLLMKSNNI 564
            A ++   MK  NI
Sbjct: 406 AAIKIFEEMKEKNI 419


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/575 (41%), Positives = 364/575 (63%), Gaps = 24/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGY+   +   ARK+F++MP RD++SWNVM+SGY+ +   G L  AR LF+ MPE+D 
Sbjct: 97  MISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKN---GNLSAARALFNQMPEKDV 153

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN ++SG+A+ G +EEA ++F+ M  +N +SWN ++S ++QNG + +A   FD     
Sbjct: 154 VSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDW 213

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S + L+ G ++   LD+A  +  +   R     D + ++N +I GY Q G + EAR+
Sbjct: 214 EIVSWNCLMGGYVRKKRLDDARSLFDRMPVR-----DKI-SWNIMITGYAQNGLLSEARR 267

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF+++P+            R++ +W +M+  + + G +  A  IFE+M E++  SWN MI
Sbjct: 268 LFEELPI------------RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMI 315

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    +E+A  LF +MP  +T +WN MV+GYAQ GN++ A   F  MPQ++ +SW +
Sbjct: 316 AGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAA 375

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           MI+G   +   E A+ LFI+M+ +G   +R   +  LS  + I  L LG Q+H  + K  
Sbjct: 376 MISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAG 435

Query: 361 IPDVPI-NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
                I  NAL+ MY +CG+I EA  +FE++   K++VSWN MI G A HGF  EAL LF
Sbjct: 436 FQTGYIAGNALLAMYGKCGSIEEAFDVFEDITE-KDIVSWNTMIAGYARHGFGKEALALF 494

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           +SM+   + P  +T + VLSAC+H GLV++G ++F SM   YGI    +H+  ++D++GR
Sbjct: 495 ESMK-MTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGR 553

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRL++A++L+K MPF PD A WGALLGA R+H + EL + AAE + ++EP+NS  YVLL
Sbjct: 554 AGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLL 613

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+YA  GRW +  E+R  M+   +KK  GYSWV+
Sbjct: 614 SNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVE 648



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 171/350 (48%), Gaps = 31/350 (8%)

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D+V+ +N  I  Y ++G+ E A  +F+ +             +R+ V++N+MI  Y    
Sbjct: 59  DIVK-WNRKISAYMRKGQCESALSVFNGMR------------RRSTVTYNAMISGYLSNN 105

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQ 276
               AR++FE+M +RD  SWN M+SGY+   ++  A  LF +MP  D ++WNAM+SG+AQ
Sbjct: 106 KFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQ 165

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            G +E A   F +M  KN +SWN +++    N   E A +LF        K D    S  
Sbjct: 166 NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLF------DSKMDWEIVSWN 219

Query: 337 LSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
             M   +    L      +  +  + D    N +IT YA+ G + EAR +FEE+  +++V
Sbjct: 220 CLMGGYVRKKRLD-DARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELP-IRDV 277

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
            +W AM+ G   +G   EA  +F+ M         +++ ++++    +  +E+ R+ F  
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMPE----KNEVSWNAMIAGYVQSQQIEKARELFDQ 333

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           M +          + ++V    + G ++ A  L   MP + D   W A++
Sbjct: 334 MPSR-----NTSSWNTMVTGYAQCGNIDQAKILFDEMP-QRDCISWAAMI 377



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 155/327 (47%), Gaps = 25/327 (7%)

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
           +++ D   WN  IS Y+     E A ++F  M    T+T+NAM+SGY      + A   F
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
           ++MP ++L+SWN M++G   N +   A  LF QM      P++    S  +M SG     
Sbjct: 115 EKMPDRDLISWNVMLSGYVKNGNLSAARALFNQM------PEKDVV-SWNAMLSGFAQNG 167

Query: 348 LGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
              +  ++  + ++ +    N L++ Y + G I +AR +F+  K+   +VSWN ++GG  
Sbjct: 168 FVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDS-KMDWEIVSWNCLMGGYV 226

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
                 +A  LF  M     +   I++  +++  A  GL+ E R+ F+ +       P  
Sbjct: 227 RKKRLDDARSLFDRM----PVRDKISWNIMITGYAQNGLLSEARRLFEEL-------PIR 275

Query: 468 EHFASLVDIVG--RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
           + FA    + G  ++G L++A  + + MP E ++  W A++        +E A+   E  
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQIEKAR---ELF 331

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDA 552
            ++   N++ +  +   YA  G  D A
Sbjct: 332 DQMPSRNTSSWNTMVTGYAQCGNIDQA 358


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 238/575 (41%), Positives = 363/575 (63%), Gaps = 24/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGY+   +   ARK+F++MP RD++SWNVM+SGY+ +   G L  AR LF+ MPE+D 
Sbjct: 97  MISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKN---GNLSAARALFNQMPEKDV 153

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN ++SG+A+ G +EEA ++F+ M  +N +SWN ++S ++QNG + +A   FD     
Sbjct: 154 VSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDW 213

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S + L+ G ++   LD+A  +  +   R     D + ++N +I GY Q G + EAR+
Sbjct: 214 EIVSWNCLMGGYVRKKRLDDARSLFDRMPVR-----DKI-SWNIMITGYAQNGLLSEARR 267

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF+++P+            R++ +W +M+  + + G +  A  IFE+M E++  SWN MI
Sbjct: 268 LFEELPI------------RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMI 315

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    +E+A  LF +MP  +T +WN MV+GYAQ GN++ A   F  MPQ++ +SW +
Sbjct: 316 AGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAA 375

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           MI+G   +   E A+ LFI+M+ +G   +R   +  LS  + I  L LG Q+H  + K  
Sbjct: 376 MISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAG 435

Query: 361 IPDVPI-NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
                I  NAL+ MY +CG+I EA  +FE++   K++VSWN MI G A HGF  EAL LF
Sbjct: 436 FQTGYIAGNALLAMYGKCGSIEEAFDVFEDITE-KDIVSWNTMIAGYARHGFGKEALALF 494

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           +SM+   + P  +T + VLSAC+H G V++G ++F SM   YGI    +H+  ++D++GR
Sbjct: 495 ESMK-MTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGR 553

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRL++A++L+K MPF PD A WGALLGA R+H + EL + AAE + ++EP+NS  YVLL
Sbjct: 554 AGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLL 613

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+YA  GRW +  E+R  M+   +KK  GYSWV+
Sbjct: 614 SNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVE 648



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 171/350 (48%), Gaps = 31/350 (8%)

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D+V+ +N  I  Y ++G+ E A  +F+ +             +R+ V++N+MI  Y    
Sbjct: 59  DIVK-WNRKISAYMRKGQCESALSVFNGMR------------RRSTVTYNAMISGYLSNN 105

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQ 276
               AR++FE+M +RD  SWN M+SGY+   ++  A  LF +MP  D ++WNAM+SG+AQ
Sbjct: 106 KFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQ 165

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            G +E A   F +M  KN +SWN +++    N   E A +LF        K D    S  
Sbjct: 166 NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLF------DSKMDWEIVSWN 219

Query: 337 LSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
             M   +    L      +  +  + D    N +IT YA+ G + EAR +FEE+  +++V
Sbjct: 220 CLMGGYVRKKRLD-DARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELP-IRDV 277

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
            +W AM+ G   +G   EA  +F+ M         +++ ++++    +  +E+ R+ F  
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMPE----KNEVSWNAMIAGYVQSQQIEKARELFDQ 333

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           M +          + ++V    + G ++ A  L   MP + D   W A++
Sbjct: 334 MPSR-----NTSSWNTMVTGYAQCGNIDQAKILFDEMP-QRDCISWAAMI 377



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 155/327 (47%), Gaps = 25/327 (7%)

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
           +++ D   WN  IS Y+     E A ++F  M    T+T+NAM+SGY      + A   F
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
           ++MP ++L+SWN M++G   N +   A  LF QM      P++    S  +M SG     
Sbjct: 115 EKMPDRDLISWNVMLSGYVKNGNLSAARALFNQM------PEKDVV-SWNAMLSGFAQNG 167

Query: 348 LGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
              +  ++  + ++ +    N L++ Y + G I +AR +F+  K+   +VSWN ++GG  
Sbjct: 168 FVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDS-KMDWEIVSWNCLMGGYV 226

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
                 +A  LF  M     +   I++  +++  A  GL+ E R+ F+ +       P  
Sbjct: 227 RKKRLDDARSLFDRM----PVRDKISWNIMITGYAQNGLLSEARRLFEEL-------PIR 275

Query: 468 EHFASLVDIVG--RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
           + FA    + G  ++G L++A  + + MP E ++  W A++        +E A+   E  
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQIEKAR---ELF 331

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDA 552
            ++   N++ +  +   YA  G  D A
Sbjct: 332 DQMPSRNTSSWNTMVTGYAQCGNIDQA 358


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/575 (41%), Positives = 364/575 (63%), Gaps = 23/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGY++  + + AR LFD+MP +D+ SWN+M++GY  +R    L +AR LFD MPE+D 
Sbjct: 70  MISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRR---LRDARMLFDSMPEKDV 126

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN ++SGY ++G ++EA  +F+ MP +N +SWN +++ ++++G +  A   F+     
Sbjct: 127 VSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDW 186

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S + L+ G ++   L +A ++  +   R     DL+ ++NT+I GY Q G + +AR+
Sbjct: 187 ELISCNCLMGGYVKRNMLGDARQLFDQIPVR-----DLI-SWNTMISGYAQDGDLSQARR 240

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF++ PV            R++ +W +M+  Y + G +  AR +F++M ++   S+N MI
Sbjct: 241 LFEESPV------------RDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMI 288

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY     M+    LF +MP P+  +WN M+SGY Q G+L  A + F  MPQ++ VSW +
Sbjct: 289 AGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAA 348

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           +IAG   N  YE A+ + ++M+ +GE  +R TF   LS  + I  L LG Q+H  V +T 
Sbjct: 349 IIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTG 408

Query: 361 IPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
                 + NAL+ MY +CG I EA  +F+ ++  K++VSWN M+ G A HGF  +AL +F
Sbjct: 409 YEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQ-HKDIVSWNTMLAGYARHGFGRQALTVF 467

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           +SM +  V P  IT + VLSAC+H GL + G ++F SM  +YGI P  +H+A ++D++GR
Sbjct: 468 ESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGR 527

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G LE+A +LI+ MPFEPD A WGALLGA R+H N+EL + AAE + K+EP NS  YVLL
Sbjct: 528 AGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLL 587

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+YA  GRW D +++RL M+   ++K  GYSWV+
Sbjct: 588 SNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVE 622



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 230/478 (48%), Gaps = 61/478 (12%)

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
           + V     IS  ++NG    A+  FD MP R+S S +A++SG ++N +   A  +  K  
Sbjct: 32  HTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMP 91

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
            +     DL  ++N ++ GY +  R+ +AR LFD +P            ++++VSWN+M+
Sbjct: 92  HK-----DLF-SWNLMLTGYARNRRLRDARMLFDSMP------------EKDVVSWNAML 133

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEE------------------ 251
             Y ++G V  AR++F++M  +++ SWN +++ Y+    +EE                  
Sbjct: 134 SGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNC 193

Query: 252 -------------ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
                        A  LF ++P  D ++WN M+SGYAQ G+L  A   F+  P +++ +W
Sbjct: 194 LMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTW 253

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
            +M+     +   + A ++F +M  + E     +++ +++  +    + +G ++ +   +
Sbjct: 254 TAMVYAYVQDGMLDEARRVFDEMPQKREM----SYNVMIAGYAQYKRMDMGRELFE---E 306

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
              P++   N +I+ Y + G + +AR +F+ M   ++ VSW A+I G A +G   EA+ +
Sbjct: 307 MPFPNIGSWNIMISGYCQNGDLAQARNLFDMMP-QRDSVSWAAIIAGYAQNGLYEEAMNM 365

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
              M+         TF   LSACA    +E G+Q    +V   G E       +LV +  
Sbjct: 366 LVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRT-GYEKGCLVGNALVGMYC 424

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENST 534
           + G +++A D+ +G+  + D   W  +L     H     A    E+++   V+P+  T
Sbjct: 425 KCGCIDEAYDVFQGVQHK-DIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEIT 481



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 182/366 (49%), Gaps = 29/366 (7%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           + V     I  + + G    A  +F+ M  R++ S+N MISGY+       A +LF KMP
Sbjct: 32  HTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMP 91

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
           H D  +WN M++GYA+   L  A   F  MP+K++VSWN+M++G   +   + A  +F +
Sbjct: 92  HKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDR 151

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAI 380
           M      P +++ S    +++ +    L  +  ++       ++   N L+  Y +   +
Sbjct: 152 M------PHKNSISWNGLLAAYVRSGRLE-EARRLFESKSDWELISCNCLMGGYVKRNML 204

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
            +AR +F+++  +++++SWN MI G A  G  ++A  LF+      V     T+ +++ A
Sbjct: 205 GDARQLFDQIP-VRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVF----TWTAMVYA 259

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG--RHGRLEDAMDLIKGMPFEPD 498
               G+++E R+ F  M       P+    +  V I G  ++ R++   +L + MPF P+
Sbjct: 260 YVQDGMLDEARRVFDEM-------PQKREMSYNVMIAGYAQYKRMDMGRELFEEMPF-PN 311

Query: 499 KAVWGALL-GACRVHNNVELAQVAAEALMKVEPE-NSTPYVLLYNMYADVGRWDDANEVR 556
              W  ++ G C+   N +LAQ  A  L  + P+ +S  +  +   YA  G +++A  + 
Sbjct: 312 IGSWNIMISGYCQ---NGDLAQ--ARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNML 366

Query: 557 LLMKSN 562
           + MK +
Sbjct: 367 VEMKRD 372


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/575 (40%), Positives = 363/575 (63%), Gaps = 23/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGY++  + + AR LFD+MP+RD+ SWNVM++GY+ +R  G   EA  LFD+MP++D 
Sbjct: 83  MISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLG---EAHKLFDLMPKKDV 139

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN ++SGYA+ G ++EA  +FN MP RN +SWN +++ ++ NG +  A   F+     
Sbjct: 140 VSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNW 199

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S + L+ G ++   L +A ++  +   R     D++ ++NT+I GY Q G + +A++
Sbjct: 200 ELISWNCLMGGYVKRNMLGDARQLFDRMPVR-----DVI-SWNTMISGYAQVGDLSQAKR 253

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF++ P+            R++ +W +M+  Y + G V  AR+ F++M  ++  S+N M+
Sbjct: 254 LFNESPI------------RDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAML 301

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    M  A  LF  MP  +  +WN M++GY Q G +  A   F  MPQ++ VSW +
Sbjct: 302 AGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAA 361

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           +I+G   N  YE A+ +F++M+ +GE  +R TFS  LS  + I  L LG Q+H  V K  
Sbjct: 362 IISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAG 421

Query: 361 IPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
                 + NAL+ MY +CG+  EA  +FE ++  K+VVSWN MI G A HGF  +AL LF
Sbjct: 422 FETGCFVGNALLGMYFKCGSTDEANDVFEGIE-EKDVVSWNTMIAGYARHGFGRQALVLF 480

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           +SM+   V P  IT + VLSAC+H+GL++ G ++F SM  +Y ++P  +H+  ++D++GR
Sbjct: 481 ESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGR 540

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRLE+A +L++ MPF+P  A WGALLGA R+H N EL + AAE + K+EP+NS  YVLL
Sbjct: 541 AGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLL 600

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+YA  GRW D  ++R  M+   ++K TGYSWV+
Sbjct: 601 SNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVE 635



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 186/370 (50%), Gaps = 24/370 (6%)

Query: 195 NVRFKR-NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEAS 253
           +V+FK  +IV+WN  I  + + G   SA  +F  M  R + S+N MISGY+       A 
Sbjct: 38  SVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLAR 97

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
           +LF KMP  D  +WN M++GY +   L  A   F  MP+K++VSWN+M++G   N   + 
Sbjct: 98  DLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDE 157

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITM 373
           A ++F +M      P R++ S    +++ + +  L  +  ++       ++   N L+  
Sbjct: 158 AREVFNKM------PHRNSISWNGLLAAYVHNGRL-KEARRLFESQSNWELISWNCLMGG 210

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           Y +   + +AR +F+ M  +++V+SWN MI G A  G  ++A  LF        +    T
Sbjct: 211 YVKRNMLGDARQLFDRMP-VRDVISWNTMISGYAQVGDLSQAKRLFNE----SPIRDVFT 265

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           + +++S     G+V+E R++F    +E  ++  I + A L   V ++ ++  A +L + M
Sbjct: 266 WTAMVSGYVQNGMVDEARKYF----DEMPVKNEISYNAMLAGYV-QYKKMVIAGELFEAM 320

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE-NSTPYVLLYNMYADVGRWDDA 552
           P   + + W  ++       N  +AQ  A  L  + P+ +   +  + + YA  G +++A
Sbjct: 321 PCR-NISSWNTMITG--YGQNGGIAQ--ARKLFDMMPQRDCVSWAAIISGYAQNGHYEEA 375

Query: 553 NEVRLLMKSN 562
             + + MK +
Sbjct: 376 LNMFVEMKRD 385


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/574 (41%), Positives = 350/574 (60%), Gaps = 54/574 (9%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           + G V+ R +  AR LFD+MP+RDVVSWN M+SGY     +G+++EA+ +FD MP ++ +
Sbjct: 37  LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQ---NGYVKEAKEIFDEMPCKNSI 93

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           +WN +++ Y + G +E+A RLF S     ++SWN M+ G+++   + +A   FDRMP RD
Sbjct: 94  SWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERD 153

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S + ++SG  QNGEL EA R+  +   R       V  +  ++ GY Q G ++EAR++
Sbjct: 154 EVSWNTMISGYAQNGELLEAQRLFEESPVR------DVFTWTAMVSGYVQNGMLDEARRV 207

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           FD +P            ++N VSWN++I  Y +   +  ARE+FE M  ++  SWNTMI+
Sbjct: 208 FDGMP------------EKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMIT 255

Query: 242 GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           GY    D+ +A N F +MP  D+++W A+++GYAQ G  E AL                 
Sbjct: 256 GYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEAL----------------- 298

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
                          LF++M+ +GE+ +R TF+S LS  + I  L LG Q+H  V K  +
Sbjct: 299 --------------HLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGL 344

Query: 362 PD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
                + NAL+ MY +CG I +A I+FE ++  K VVSWN MI G A HGF  EAL LF+
Sbjct: 345 ESGCYVGNALLVMYCKCGNIDDAYIVFEGIE-EKEVVSWNTMIAGYARHGFGKEALMLFE 403

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
           SM+   +LP  +T + VLSAC+H GLV++G ++F SM  +YGI    +H+  ++D++GR 
Sbjct: 404 SMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRA 463

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           GRL+DA +L+K MPFEPD A WGALLGA R+H N EL + AA+ + ++EP+NS  YVLL 
Sbjct: 464 GRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLS 523

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N+YA  GRW D   +RL M+   +KK  GYSWV+
Sbjct: 524 NLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVE 557



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 125/388 (32%), Positives = 205/388 (52%), Gaps = 27/388 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGY +  E+ +A++LF+E P RDV +W  M+SGY+ +   G L+EAR +FD MPE++ 
Sbjct: 160 MISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQN---GMLDEARRVFDGMPEKNS 216

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN +I+GY +   M++A  LF +MP +NV SWN MI+G+ QNGD+A A  FFDRMP R
Sbjct: 217 VSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQR 276

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA-YNTLIVGYGQRGRVEEAR 179
           DS S +A+++G  Q+G  +EA  + V+       GE L R+ + + +    +   +E  +
Sbjct: 277 DSISWAAIIAGYAQSGYGEEALHLFVEMKR---DGERLNRSTFTSTLSTCAEIAALELGK 333

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           ++  ++             +      N++++ Y K G++  A  +FE + E++  SWNTM
Sbjct: 334 QVHGRVV--------KAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTM 385

Query: 240 ISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           I+GY      +EA  LF  M      PD +T   ++S  +  G ++   ++F  M Q   
Sbjct: 386 IAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYG 445

Query: 296 VSWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
           ++ NS    C  +        + A  L   M  E   PD  T+ ++L  S    +  LG 
Sbjct: 446 ITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFE---PDAATWGALLGASRIHGNTELGE 502

Query: 351 QIHQMVTKTVIPDVPINNALITMYARCG 378
           +  +M+ +    +  +   L  +YA  G
Sbjct: 503 KAAKMIFEMEPDNSGMYVLLSNLYAASG 530


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/575 (41%), Positives = 365/575 (63%), Gaps = 23/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGYVK+  + +A++LFDEMP ++++SWN M++GY  +R      E    F+ M ERD 
Sbjct: 108 MISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLE---FFNEMDERDV 164

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN ++ G+ + G+++ A + F      NVVSW  M+SGF +NG++  +   FD+MP R
Sbjct: 165 VSWNLMVDGFIQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSR 224

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++S  +Q  E+DEA+R+  +   R     D V ++ T+I GY + G+++EAR+
Sbjct: 225 NIVSWNAMISAYVQRCEIDEASRLFEEMPER-----DSV-SWTTMINGYVRIGKLDEARE 278

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           L +++P             RNI +  +MI  Y +   V  AR  F+++   D   WN MI
Sbjct: 279 LLNEMPY------------RNIGAQTAMISGYIQCNKVDEARRFFDEIGTWDVVCWNAMI 326

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY H   + EA  L  +M + D +TWN M+S YAQ+G ++ A+  F+ M +++LVSWNS
Sbjct: 327 AGYAHHGRINEALCLSKRMVNKDMVTWNTMISCYAQVGQMDRAVKIFEEMGERDLVSWNS 386

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT- 359
           +IAG   N     A+K F  M  EG+KPD+ +F+  LS  + I  L +G Q+HQ+V K  
Sbjct: 387 LIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATIAALQVGNQLHQVVVKGG 446

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
            +  + +NNALITMYA+CG I+EA ++F  +    +V+SWN++IGG A +G+  EAL+LF
Sbjct: 447 YLNYLVVNNALITMYAKCGRILEAGLVFNGI-CHADVISWNSLIGGYAINGYGKEALKLF 505

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           + M S  + P  +TFI +LSAC HAG+V+ G + FK M   Y IEP  EH+A +VD++GR
Sbjct: 506 EEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMSKVYAIEPLAEHYACMVDLLGR 565

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRL++A ++++GM  +    VWGALLGACR H N+EL ++AA  L + EP  ++ YVLL
Sbjct: 566 VGRLDEAFEIVRGMKVKATAGVWGALLGACRAHGNLELGRLAAHKLSEFEPHKTSNYVLL 625

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N++A+  RW++  EVR+LM +++  K  G SWV+
Sbjct: 626 SNIHAEANRWNEVQEVRMLMNASSTVKEPGCSWVE 660



 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 162/503 (32%), Positives = 262/503 (52%), Gaps = 46/503 (9%)

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
           M E++ VT+N++IS YAK G +  A  LF+ MP RN+VSWN M+SG+L NG    A + F
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLF 60

Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAARVL--VKCGSRCDGGEDLVRAYNTLIVGYGQR 172
             MP RD  S + +++   +NGE+++A  +   + C  R       V  +N +I GY ++
Sbjct: 61  VIMPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYR-----KGVACWNAMISGYVKK 115

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           GRV EA++LFD++PV            +N++SWNSM+  Y +   +    E F +M ERD
Sbjct: 116 GRVNEAKRLFDEMPV------------KNLISWNSMLAGYTQNRKMRLGLEFFNEMDERD 163

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
             SWN M+ G+I V D++ A   F +   P+ ++W  M+SG+A+ GN+  +   F +MP 
Sbjct: 164 VVSWNLMVDGFIQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPS 223

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           +N+VSWN+MI+      + + A +LF +M      P+R + S   +M +G V +    + 
Sbjct: 224 RNIVSWNAMISAYVQRCEIDEASRLFEEM------PERDSVSWT-TMINGYVRIGKLDEA 276

Query: 353 HQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
            +++ +    ++    A+I+ Y +C  + EAR  F+E+    +VV WNAMI G A HG  
Sbjct: 277 RELLNEMPYRNIGAQTAMISGYIQCNKVDEARRFFDEIGTW-DVVCWNAMIAGYAHHGRI 335

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
            EAL L K M    V    +T+ +++S  A  G ++   + F+ M      E  +  + S
Sbjct: 336 NEALCLSKRM----VNKDMVTWNTMISCYAQVGQMDRAVKIFEEMG-----ERDLVSWNS 386

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           L+     +G+  DA+     M  E   PD+  +   L +C     +   QV  +    V 
Sbjct: 387 LIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCAT---IAALQVGNQLHQVVV 443

Query: 530 PENSTPYVLLYN----MYADVGR 548
                 Y+++ N    MYA  GR
Sbjct: 444 KGGYLNYLVVNNALITMYAKCGR 466


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/575 (38%), Positives = 371/575 (64%), Gaps = 23/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+GY K+ +   A+K+F++MP +D+VS+N M++GY  +   G +  A   F+ M ER+ 
Sbjct: 148 MIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQN---GKMHLALQFFESMTERNV 204

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN +++GY K+G++  A +LF  +P  N VSW  M+ G  + G +A A E FDRMP +
Sbjct: 205 VSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSK 264

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A+++  +Q+ ++DEA ++  K   +     D V ++ T+I GY + G+++EAR+
Sbjct: 265 NVVSWNAMIATYVQDLQVDEAVKLFKKMPHK-----DSV-SWTTIINGYIRVGKLDEARQ 318

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +++++P             ++I +  +++    + G +  A ++F ++   D   WN+MI
Sbjct: 319 VYNQMPC------------KDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMI 366

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY     M+EA NLF +MP  ++++WN M+SGYAQ G ++ A + F+ M +KN+VSWNS
Sbjct: 367 AGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNS 426

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT- 359
           +IAG   N  Y  A+K  + M  EG+KPD+ TF+  LS  + +  L +G Q+H+ + K+ 
Sbjct: 427 LIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSG 486

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
            + D+ + NALI MYA+CG +  A  +F +++ + +++SWN++I G A +G+A +A + F
Sbjct: 487 YMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECV-DLISWNSLISGYALNGYANKAFKAF 545

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           + M S +V+P  +TFI +LSAC+HAGL  +G   FK M+ ++ IEP  EH++ LVD++GR
Sbjct: 546 EQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGR 605

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRLE+A + ++GM  + +  +WG+LLGACRVH N+EL + AAE L ++EP N++ Y+ L
Sbjct: 606 VGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAERLFELEPHNASNYITL 665

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            NM+A+ GRW++   VR+LM+     K  G SW++
Sbjct: 666 SNMHAEAGRWEEVERVRMLMRGKRAGKQPGCSWIE 700



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 162/519 (31%), Positives = 273/519 (52%), Gaps = 42/519 (8%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G +EEA  +F  M  ++ VT+N++IS  AK   + +A +LF+ M  RN+VSWN MI+G+L
Sbjct: 31  GKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYL 90

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
            N  V  A E FD MP RD+ S + +++   + G+L++A  +L     + D        +
Sbjct: 91  HNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEKARELLELVPDKLDTA-----CW 145

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N +I GY ++G+  +A+K+F+++P             +++VS+NSM+  Y + G +  A 
Sbjct: 146 NAMIAGYAKKGQFNDAKKVFEQMPA------------KDLVSYNSMLAGYTQNGKMHLAL 193

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
           + FE M ER+  SWN M++GY+   D+  A  LF K+P+P+ ++W  M+ G A+ G +  
Sbjct: 194 QFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAE 253

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A + F RMP KN+VSWN+MIA    +   + A+KLF +M       D  ++++I++    
Sbjct: 254 ARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKM----PHKDSVSWTTIINGYIR 309

Query: 343 IVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  L    Q++ QM  K    D+    AL++   + G I EA  +F  +    +VV WN+
Sbjct: 310 VGKLDEARQVYNQMPCK----DITAQTALMSGLIQNGRIDEADQMFSRIG-AHDVVCWNS 364

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI G +  G   EAL LF+ M     +   +++ +++S  A AG ++   + F++M    
Sbjct: 365 MIAGYSRSGRMDEALNLFRQM----PIKNSVSWNTMISGYAQAGQMDRATEIFQAMR--- 417

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGACRVHNNVELA 518
             E  I  + SL+    ++    DA+  +  M  E   PD++ +   L AC     +++ 
Sbjct: 418 --EKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVG 475

Query: 519 QVAAEALMKVEPENSTPYV--LLYNMYADVGRWDDANEV 555
               E ++K    N   +V   L  MYA  GR   A +V
Sbjct: 476 NQLHEYILKSGYMNDL-FVGNALIAMYAKCGRVQSAEQV 513



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 208/433 (48%), Gaps = 61/433 (14%)

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +N  I+  G+ G+VEEA ++F  +              +N+V++NSMI   AK   +  A
Sbjct: 20  HNRQIIQLGKLGKVEEAIRIFFNMT------------HKNLVTYNSMISVLAKNARIRDA 67

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           R++F+QM  R+  SWNTMI+GY+H   +EEAS LF  MP  D  +W  M++ Y + G LE
Sbjct: 68  RQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLE 127

Query: 282 LALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
            A +  + +P K +   WN+MIAG      +  A K+F QM  +    D  +++S+L+  
Sbjct: 128 KARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAK----DLVSYNSMLAGY 183

Query: 341 SGIVDLHLGMQIHQMVTK-----------------------TVIPDVPINNAL--ITM-- 373
           +    +HL +Q  + +T+                        +   +P  NA+  +TM  
Sbjct: 184 TQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLC 243

Query: 374 -YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
             A+ G + EAR +F+ M   KNVVSWNAMI          EA++LFK M         +
Sbjct: 244 GLAKYGKMAEARELFDRMP-SKNVVSWNAMIATYVQDLQVDEAVKLFKKMPH----KDSV 298

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           ++ ++++     G ++E RQ +  M  +      I    +L+  + ++GR+++A  +   
Sbjct: 299 SWTTIINGYIRVGKLDEARQVYNQMPCK-----DITAQTALMSGLIQNGRIDEADQMFSR 353

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP-ENSTPYVLLYNMYADVGRWDD 551
           +    D   W +++        ++     A  L +  P +NS  +  + + YA  G+ D 
Sbjct: 354 IGAH-DVVCWNSMIAGYSRSGRMD----EALNLFRQMPIKNSVSWNTMISGYAQAGQMDR 408

Query: 552 ANEVRLLMKSNNI 564
           A E+   M+  NI
Sbjct: 409 ATEIFQAMREKNI 421



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 166/343 (48%), Gaps = 28/343 (8%)

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRM 290
           +  F+ N  I     +  +EEA  +F  M H + +T+N+M+S  A+   +  A   F +M
Sbjct: 15  KHAFNHNRQIIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQM 74

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHL 348
             +NLVSWN+MIAG   N   E A +LF  M      P+R  FS  L ++  +    L  
Sbjct: 75  SLRNLVSWNTMIAGYLHNNMVEEASELFDVM------PERDNFSWALMITCYTRKGKLEK 128

Query: 349 GMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
             ++ ++V   +  D    NA+I  YA+ G   +A+ +FE+M   K++VS+N+M+ G   
Sbjct: 129 ARELLELVPDKL--DTACWNAMIAGYAKKGQFNDAKKVFEQMP-AKDLVSYNSMLAGYTQ 185

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           +G    AL+ F+SM    V    +++  +++    +G +    Q F+ + N     P   
Sbjct: 186 NGKMHLALQFFESMTERNV----VSWNLMVAGYVKSGDLSSAWQLFEKIPN-----PNAV 236

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV--AAEALM 526
            + +++  + ++G++ +A +L   MP   +   W A++        V+  QV  A +   
Sbjct: 237 SWVTMLCGLAKYGKMAEARELFDRMP-SKNVVSWNAMIATY-----VQDLQVDEAVKLFK 290

Query: 527 KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
           K+  ++S  +  + N Y  VG+ D+A +V   M   +I   T 
Sbjct: 291 KMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTA 333


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/657 (37%), Positives = 373/657 (56%), Gaps = 99/657 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+S   +   +A AR+LFDE+P+R+ VSWN MI+   +    G + +AR LFD MP RD 
Sbjct: 48  MLSALARHGRIADARRLFDEIPRRNTVSWNAMIA---ACSDHGRVADARDLFDAMPARDG 104

Query: 61  VTW--------------------------------NTVISGYAKTGEMEEALRLFNSMPA 88
            +W                                N +ISGYAK G  ++A+ L   MPA
Sbjct: 105 FSWTLMVSCYARAGELGLARDALDRMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPA 164

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC 148
            +++SWN+++ G  +NG++  A++FFD MP RD  S + ++ G ++ G++D AA +    
Sbjct: 165 PDIISWNSVLVGLTRNGEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGV 224

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG--------EGNVRFK- 199
            S        V ++ TL+ GY + GR+ EAR+LFD+IP   DR          G +R   
Sbjct: 225 PS------PNVVSWVTLLNGYCRAGRIGEARELFDRIP---DRNVAAWNVMLSGYLRLSH 275

Query: 200 -------------RNIVSWNSMIMCYAKAGDVVSAREIFEQM------------------ 228
                        +N +SW +MI    + G +  A+++ ++M                  
Sbjct: 276 MEEAYKLFTEMPDKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQS 335

Query: 229 ------------LE-RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
                       LE RD   WNTMISGY+H   ++EA  LF +MP+ D ++WN M++GYA
Sbjct: 336 KMIDDARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYA 395

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
             G +  A+  F++M Q+N VSWNS+I+G   N     A++ F+ M+ + ++ D  T++ 
Sbjct: 396 HDGQMRKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYAC 455

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
            LS  + +  LH+G Q H ++ ++  I D    NALI+ YA+CG I+EAR +F+EM    
Sbjct: 456 CLSACADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPA-P 514

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           ++VSWNA+I G AS+G  TEA+ +F+ M    V P  +TF+ VLSAC+HAGL++EG   F
Sbjct: 515 DIVSWNALIDGYASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFF 574

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
            SM  +Y + P  EH+A +VD++GR GRL +A ++I+GM  +P+  VWGA+LGACRVH N
Sbjct: 575 NSMTKDYALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPNAGVWGAMLGACRVHKN 634

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
            ELAQ+AAE L ++EP  ++ YVLL N+ A+ G+WD+A  +R+ +K   + K  G +
Sbjct: 635 HELAQLAAEKLYELEPHKTSNYVLLSNITAEAGKWDEAQNMRVFIKERGVHKTPGLA 691



 Score =  241 bits (616), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 162/527 (30%), Positives = 251/527 (47%), Gaps = 89/527 (16%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           SG L  AR LFD MP R+ V++N ++S  A+ G + +A RLF+ +P RN VSWNAMI+  
Sbjct: 24  SGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAAC 83

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC-GSRCDGGEDLVR 160
             +G VA+A + FD MP RD  S + +VS   + GEL  A   L +  G +C        
Sbjct: 84  SDHGRVADARDLFDAMPARDGFSWTLMVSCYARAGELGLARDALDRMPGDKCTA------ 137

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
            YN +I GY + GR ++A  L  ++P              +I+SWNS+++   + G++V 
Sbjct: 138 CYNAMISGYAKHGRFDDAVALLREMPAP------------DIISWNSVLVGLTRNGEMVR 185

Query: 221 AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNL 280
           A + F++M  RD  SWN M+ GY+   D++ A+ LF  +P P+ ++W  +++GY + G +
Sbjct: 186 AVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRI 245

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
             A + F R+P +N+ +WN M++G       E A KLF +M      PD+++ S   +M 
Sbjct: 246 GEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEM------PDKNSISWT-TMI 298

Query: 341 SGIV---------DLHLGMQIHQMVTKTV----------------------IPDVPINNA 369
           S +V         DL   M       KT                       + D    N 
Sbjct: 299 SALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIFDGLEVRDAVCWNT 358

Query: 370 LITMYARCGAIVEARIIFEEM-----------------------------KL-LKNVVSW 399
           +I+ Y  CG + EA ++F++M                             K+  +N VSW
Sbjct: 359 MISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSW 418

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N++I G   +G   EAL+ F  MR       + T+   LSACA    +  GRQ F S++ 
Sbjct: 419 NSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQ-FHSLLA 477

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             G         +L+    + GR+ +A  +   MP  PD   W AL+
Sbjct: 478 RSGYIGDSFAGNALISAYAKCGRILEARQVFDEMP-APDIVSWNALI 523



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 145/320 (45%), Gaps = 43/320 (13%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N  +   A++G + +AR +F+ M  R+T S+N M+S       + +A  LF ++P  +T+
Sbjct: 15  NQELTRLARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTV 74

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           +WNAM++  +  G +  A D F  MP ++  SW  M++ C     Y  A +L +      
Sbjct: 75  SWNAMIAACSDHGRVADARDLFDAMPARDGFSWTLMVS-C-----YARAGELGLARDALD 128

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARI 385
             P     +   +M SG            ++ +   PD+   N+++    R G +V A  
Sbjct: 129 RMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVK 188

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
            F+EM   +++VSWN M+ G    G    A  LF  + S    P  ++++++L+    AG
Sbjct: 189 FFDEMP-ARDMVSWNLMLEGYVRAGDVDSAAGLFAGVPS----PNVVSWVTLLNGYCRAG 243

Query: 446 LVEEGRQHFKS-----------MVNEYGIEPRIEH------------------FASLVDI 476
            + E R+ F             M++ Y    R+ H                  + +++  
Sbjct: 244 RIGEARELFDRIPDRNVAAWNVMLSGY---LRLSHMEEAYKLFTEMPDKNSISWTTMISA 300

Query: 477 VGRHGRLEDAMDLIKGMPFE 496
           + R G+L++A DL+  MPF+
Sbjct: 301 LVRGGKLQEAKDLLDKMPFD 320


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/626 (37%), Positives = 374/626 (59%), Gaps = 62/626 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-D 59
           MI+GY+    + +A KLFD M +RD  SW +MI+ Y      G LE+AR LF+++P++ D
Sbjct: 85  MIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRK---GMLEKARELFELVPDKLD 141

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
              WN +I+GYAK G  ++A ++F  MP +++VS+N+M++G+ QNG +  A++FF+RM  
Sbjct: 142 TACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAE 201

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           R+  S + +V+G + N +L  A  +  K        +    ++ T++ G+ + G++ EAR
Sbjct: 202 RNVVSWNLMVAGFVNNCDLGSAWELFEKIP------DPNAVSWVTMLCGFARHGKIVEAR 255

Query: 180 KLFDKIPV---------------NCDRGEGNVRFK----RNIVSWNSMIMCYAKAGDVVS 220
           KLFD++P                +    E    FK    ++ VSW +MI  Y + G +  
Sbjct: 256 KLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDE 315

Query: 221 AREIFEQML-------------------------------ERDTFSWNTMISGYIHVLDM 249
           ARE++ QM                                +RD   WN+MI+GY     M
Sbjct: 316 AREVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRM 375

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            EA NLF +MP  + ++WN M+SGYAQ G ++ A + F+ M  +N++SWNS+I G   N 
Sbjct: 376 SEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNG 435

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINN 368
            Y  A+K  + M  EG+KPD+ TF+  LS  + +  L +G Q+H+++ K+  I D+ ++N
Sbjct: 436 LYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSN 495

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           ALI MYA+CG +  A  +F++++ + +++SWN++I G A +G+A EA   F+ M S   +
Sbjct: 496 ALIAMYAKCGGVQSAEKVFKDIEGV-DLISWNSLISGYALNGYANEAFWAFEQMSSEGTV 554

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P  +TFI +LSAC+HAGL  +G   FK M+  + IEP  EH++ LVD++GR GRLE+A +
Sbjct: 555 PDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFN 614

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           +++GM  + +  +WG+LL ACRVH N+EL ++AA  L+++EP N++ Y+ L NM+A+ GR
Sbjct: 615 IVRGMKVKANAGLWGSLLAACRVHKNMELGKIAALRLLELEPHNASNYITLSNMHAEAGR 674

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVD 574
           W+D   +R+LM+     K  G SW++
Sbjct: 675 WEDVERLRVLMRERRAGKLPGCSWIE 700



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 141/468 (30%), Positives = 258/468 (55%), Gaps = 41/468 (8%)

Query: 7   KRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTV 66
           K+ ++ +A+++F  +  ++  ++N M++ +  +   G + +AR LFD M +R+ V+WNT+
Sbjct: 29  KQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKN---GRVSDARQLFDKMSQRNLVSWNTM 85

Query: 67  ISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-DSASL 125
           I+GY     +EEA +LF+ M  R+  SW  MI+ + + G +  A E F+ +P + D+A  
Sbjct: 86  IAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKARELFELVPDKLDTACW 145

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           +A+++G  + G  D+A +V  K   +     DLV +YN+++ GY Q G++  A K F+++
Sbjct: 146 NAMIAGYAKKGRFDDAEKVFEKMPVK-----DLV-SYNSMLAGYTQNGKMGLAMKFFERM 199

Query: 186 PV---------------NCDRGEGNVRFKR----NIVSWNSMIMCYAKAGDVVSAREIFE 226
                            NCD G     F++    N VSW +M+  +A+ G +V AR++F+
Sbjct: 200 AERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFD 259

Query: 227 QMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
           +M  ++  SWN MI+ Y+  L ++EA  LF + P+ D ++W  M++GY ++G L+ A + 
Sbjct: 260 RMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREV 319

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIV 344
           + +MP K++ +  ++++G   N   + A ++F Q+     K D   ++S+++    SG +
Sbjct: 320 YNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLN----KRDAICWNSMIAGYCQSGRM 375

Query: 345 DLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
              L +   QM  K  +      N +I+ YA+ G +  A  IFE M  ++NV+SWN++I 
Sbjct: 376 SEALNL-FRQMPVKNAVS----WNTMISGYAQAGEMDRATEIFEAMG-VRNVISWNSLIT 429

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
           G   +G   +AL+    M      P   TF   LS+CA+   ++ G+Q
Sbjct: 430 GFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQ 477



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 153/518 (29%), Positives = 273/518 (52%), Gaps = 40/518 (7%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G ++EA+ +F  +  ++  T+N++++ +AK G + +A +LF+ M  RN+VSWN MI+G+L
Sbjct: 31  GKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYL 90

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
            N  V  A + FD M  RD+ S + +++   + G L++A  +      + D        +
Sbjct: 91  HNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKARELFELVPDKLDTA-----CW 145

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N +I GY ++GR ++A K+F+K+PV            +++VS+NSM+  Y + G +  A 
Sbjct: 146 NAMIAGYAKKGRFDDAEKVFEKMPV------------KDLVSYNSMLAGYTQNGKMGLAM 193

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
           + FE+M ER+  SWN M++G+++  D+  A  LF K+P P+ ++W  M+ G+A+ G +  
Sbjct: 194 KFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVE 253

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F RMP KN+VSWN+MIA    +   + A+KLF       E P +   S   +M +G
Sbjct: 254 ARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLF------KETPYKDCVSWT-TMING 306

Query: 343 IVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
            V +    +  ++  +    DV    AL++   + G I EA  +F ++   ++ + WN+M
Sbjct: 307 YVRVGKLDEAREVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLN-KRDAICWNSM 365

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I G    G  +EAL LF+ M     +   +++ +++S  A AG ++   + F++M    G
Sbjct: 366 IAGYCQSGRMSEALNLFRQMP----VKNAVSWNTMISGYAQAGEMDRATEIFEAM----G 417

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGACRVHNNVELAQ 519
           +   I  + SL+    ++G   DA+  +  M  E   PD++ +   L +C     +++ +
Sbjct: 418 VRNVIS-WNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGK 476

Query: 520 VAAEALMKVEPENSTPYV--LLYNMYADVGRWDDANEV 555
              E ++K    N   +V   L  MYA  G    A +V
Sbjct: 477 QLHELILKSGYINDL-FVSNALIAMYAKCGGVQSAEKV 513



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 142/503 (28%), Positives = 235/503 (46%), Gaps = 104/503 (20%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N  I    K G+++EA R+F+++  +N  ++N+M++ F +NG V++A + FD+M  R+  
Sbjct: 21  NKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMSQRN-- 78

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
               LVS                               +NT+I GY     VEEA KLFD
Sbjct: 79  ----LVS-------------------------------WNTMIAGYLHNNMVEEAHKLFD 103

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-DTFSWNTMISG 242
            +             +R+  SW  MI CY + G +  ARE+FE + ++ DT  WN MI+G
Sbjct: 104 LMA------------ERDNFSWALMITCYTRKGMLEKARELFELVPDKLDTACWNAMIAG 151

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
           Y      ++A  +F KMP  D +++N+M++GY Q G + LA+ FF+RM ++N+VSWN M+
Sbjct: 152 YAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMV 211

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP 362
           AG   N D   A +LF ++      PD +  S +                          
Sbjct: 212 AGFVNNCDLGSAWELFEKI------PDPNAVSWV-------------------------- 239

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
                  ++  +AR G IVEAR +F+ M   KNVVSWNAMI          EA++LFK  
Sbjct: 240 ------TMLCGFARHGKIVEARKLFDRMP-CKNVVSWNAMIAAYVQDLQIDEAVKLFKET 292

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
             +K   ++ T I   +     G ++E R+ +  M  +  +  +    + L+    ++GR
Sbjct: 293 -PYKDCVSWTTMI---NGYVRVGKLDEAREVYNQMPYK-DVAAKTALMSGLI----QNGR 343

Query: 483 LEDAMDLIKGMPFEPDKAVWGALL-GACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
           +++A  +   +  + D   W +++ G C+     E    A     ++  +N+  +  + +
Sbjct: 344 IDEASQVFSQLN-KRDAICWNSMIAGYCQSGRMSE----ALNLFRQMPVKNAVSWNTMIS 398

Query: 542 MYADVGRWDDANEVRLLMKSNNI 564
            YA  G  D A E+   M   N+
Sbjct: 399 GYAQAGEMDRATEIFEAMGVRNV 421


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/574 (41%), Positives = 353/574 (61%), Gaps = 23/574 (4%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           I+ Y +  ++  AR++FDEMP + +VSWN M++GY  +       EARYLFD MPER+ V
Sbjct: 23  IARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRP---REARYLFDKMPERNTV 79

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           +WN +ISGY K   + EA + F++MP RNVVSW AM+ G++Q G V+ A   F +MP ++
Sbjct: 80  SWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKN 139

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S + ++ GLIQ   +DEA R L       D     V A   +I GY Q GR+ EAR+L
Sbjct: 140 VVSWTVMLGGLIQVRRIDEA-RGLFDIMPVKD-----VVARTNMISGYCQEGRLAEAREL 193

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           FD++P            +RN++SW +MI  Y + G V  AR++FE M E++  SW  M+ 
Sbjct: 194 FDEMP------------RRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLM 241

Query: 242 GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           GY     +EEAS LF  MP    +  NAM+ G+ Q G +  A   F ++ +K+  +W++M
Sbjct: 242 GYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAM 301

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTV 360
           I   E       A+ LF  MQ EG + +  +  S+LS+ + +  L  G Q+H ++V    
Sbjct: 302 IKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQF 361

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
             DV + + LITMY +CG +V+AR IF+     K++V WN++I G A HG   EAL++F 
Sbjct: 362 DSDVFVASVLITMYVKCGDLVKARQIFDRFSP-KDIVMWNSIITGYAQHGLVEEALQVFH 420

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M S  +    +TF+ VLSAC++ G V+EG + F+SM ++Y +EP+ EH+A +VD++GR 
Sbjct: 421 EMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRA 480

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G + DAMDLI+ MP E D  +WGALLGACR H N+ LA+VAA+ L+++EP+N+ PY+LL 
Sbjct: 481 GLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLS 540

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N+YA  GRW D  E+R  M+   + K  G SW++
Sbjct: 541 NIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIE 574



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 137/450 (30%), Positives = 230/450 (51%), Gaps = 62/450 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +ISGYVK R +++ARK FD MP+R+VVSW  M+ GY+     G + EA  LF  MPE++ 
Sbjct: 84  LISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQ---EGLVSEAETLFWQMPEKNV 140

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  ++ G  +   ++EA  LF+ MP ++VV+   MISG+ Q G +A A E FD MP R
Sbjct: 141 VSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRR 200

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S + ++SG +QNG++D A ++      + +       ++  +++GY Q GR+EEA +
Sbjct: 201 NVISWTTMISGYVQNGQVDVARKLFEVMPEKNE------VSWTAMLMGYTQGGRIEEASE 254

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD +PV            + +V+ N+MI+ + + G+V  AR++F+Q+ E+D  +W+ MI
Sbjct: 255 LFDAMPV------------KAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMI 302

Query: 241 SGYIHVLDMEEASNLFVKMPH--------------------------------------- 261
             Y       EA NLF  M                                         
Sbjct: 303 KVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFD 362

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            D    + +++ Y + G+L  A   F R   K++V WNS+I G   +   E A+++F +M
Sbjct: 363 SDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEM 422

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVI-PDVPINNALITMYARCGA 379
              G   D  TF  +LS  S    +  G++I + M +K ++ P       ++ +  R G 
Sbjct: 423 CSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGL 482

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           + +A  + ++M +  + + W A++G C +H
Sbjct: 483 VNDAMDLIQKMPVEADAIIWGALLGACRTH 512



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 208/402 (51%), Gaps = 40/402 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGY +   +A+AR+LFDEMP+R+V+SW  MISGY+    +G ++ AR LF++MPE++ 
Sbjct: 177 MISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQ---NGQVDVARKLFEVMPEKNE 233

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  ++ GY + G +EEA  LF++MP + VV+ NAMI GF QNG+VA A + FD++  +
Sbjct: 234 VSWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREK 293

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  + SA++    + G   EA  +        +G +    +  +++        ++  R+
Sbjct: 294 DDGTWSAMIKVYERKGFEVEALNLFALMQR--EGVQSNFPSLISVLSVCASLASLDHGRQ 351

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +  ++  +        +F  ++   + +I  Y K GD+V AR+IF++   +D   WN++I
Sbjct: 352 VHAELVKS--------QFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSII 403

Query: 241 SGYIHVLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           +GY     +EEA  +F +M       D +T+  ++S  +  G ++  L+ F+ M  K LV
Sbjct: 404 TGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLV 463

Query: 297 SWNSMIAGCETNKDYEG-------AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
              +    C    D  G       A+ L  +M VE    D   + ++L    G    H+ 
Sbjct: 464 EPKTEHYACMV--DLLGRAGLVNDAMDLIQKMPVEA---DAIIWGALL----GACRTHMN 514

Query: 350 MQIHQMVTKTVIPDVPINNA----LITMYA---RCGAIVEAR 384
           M + ++  K ++   P N      L  +YA   R G + E R
Sbjct: 515 MNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELR 556



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 132/255 (51%), Gaps = 12/255 (4%)

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP 262
           +++NS I  YA+ G + SAR +F++M ++   SWN+M++GY       EA  LF KMP  
Sbjct: 17  IAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPER 76

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           +T++WN ++SGY +   +  A   F  MP++N+VSW +M+ G         A  LF QM 
Sbjct: 77  NTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQM- 135

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVE 382
                P+++  S  + M  G++ +    +   +     + DV     +I+ Y + G + E
Sbjct: 136 -----PEKNVVSWTV-MLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAE 189

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           AR +F+EM   +NV+SW  MI G   +G    A +LF+ M         +++ ++L    
Sbjct: 190 ARELFDEMP-RRNVISWTTMISGYVQNGQVDVARKLFEVMPE----KNEVSWTAMLMGYT 244

Query: 443 HAGLVEEGRQHFKSM 457
             G +EE  + F +M
Sbjct: 245 QGGRIEEASELFDAM 259


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/577 (41%), Positives = 357/577 (61%), Gaps = 27/577 (4%)

Query: 2   ISGYVKRREMAKARKLFDE--MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           I+ Y +  ++  ARK+FDE  +P R V SWN M++ Y  +R      EA  LF+ MP+R+
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQP---REALLLFEKMPQRN 85

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            V+WN +ISG+ K G + EA R+F++MP RNVVSW +M+ G+++NGDVA A   F  MP 
Sbjct: 86  TVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPH 145

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           ++  S + ++ GL+Q G +D+A ++      +     D+V A   +I GY + GR++EAR
Sbjct: 146 KNVVSWTVMLGGLLQEGRVDDARKLFDMMPEK-----DVV-AVTNMIGGYCEEGRLDEAR 199

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            LFD++P            KRN+V+W +M+  YA+ G V  AR++FE M ER+  SW  M
Sbjct: 200 ALFDEMP------------KRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAM 247

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           + GY H   M EAS+LF  MP    +  N M+ G+   G ++ A   FK M +++  +W+
Sbjct: 248 LLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWS 307

Query: 300 SMIAGCETNKDYE-GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVT 357
           +MI   E  K YE  A+ LF +MQ EG   +  +  S+LS+   +  L  G Q+H Q+V 
Sbjct: 308 AMIKVYE-RKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVR 366

Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
                D+ + + LITMY +CG +V A+ +F    L K+VV WN+MI G + HG   EAL 
Sbjct: 367 SEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPL-KDVVMWNSMITGYSQHGLGEEALN 425

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           +F  M S  V P  +TFI VLSAC+++G V+EG + F++M  +Y +EP IEH+A LVD++
Sbjct: 426 VFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLL 485

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
           GR  ++ +AM L++ MP EPD  VWGALLGACR H  ++LA+VA E L ++EP+N+ PYV
Sbjct: 486 GRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYV 545

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           LL NMYA  GRW D   +R  +K+ ++ K  G SW++
Sbjct: 546 LLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIE 582



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 132/450 (29%), Positives = 217/450 (48%), Gaps = 62/450 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +ISG++K   +++AR++FD MP R+VVSW  M+ GY+    +G + EA  LF  MP ++ 
Sbjct: 92  LISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVR---NGDVAEAERLFWHMPHKNV 148

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  ++ G  + G +++A +LF+ MP ++VV+   MI G+ + G +  A   FD MP R
Sbjct: 149 VSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKR 208

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  + +A+VSG  +NG++D A ++      R +       ++  +++GY   GR+ EA  
Sbjct: 209 NVVTWTAMVSGYARNGKVDVARKLFEVMPERNE------VSWTAMLLGYTHSGRMREASS 262

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD +PV            + +V  N MIM +   G+V  AR +F+ M ERD  +W+ MI
Sbjct: 263 LFDAMPV------------KPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMI 310

Query: 241 SGYIHVLDMEEASNLFVKMPH--------------------------------------- 261
             Y       EA  LF +M                                         
Sbjct: 311 KVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFD 370

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            D    + +++ Y + GNL  A   F R P K++V WNSMI G   +   E A+ +F  M
Sbjct: 371 QDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDM 430

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV--TKTVIPDVPINNALITMYARCGA 379
              G  PD  TF  +LS  S    +  G+++ + +     V P +     L+ +  R   
Sbjct: 431 CSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQ 490

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           + EA  + E+M +  + + W A++G C +H
Sbjct: 491 VNEAMKLVEKMPMEPDAIVWGALLGACRTH 520


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/575 (39%), Positives = 360/575 (62%), Gaps = 23/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+GY K+R   +A+KLFDEM  ++VVSWN ++SGY  +   G ++     F+ M ER+ 
Sbjct: 146 LIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKN---GKMQLGLQFFEAMGERNV 202

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN ++ GY   G+++ A   F  +P  NVVSW  M+SGF   G +  A   F+ MP +
Sbjct: 203 VSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTK 262

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++   ++  ++D+A ++ ++   +     D V ++  +I GY + G++ +AR+
Sbjct: 263 NLVSWNAMIGAYVRENQIDDAYKLFMEMPEK-----DSV-SWTAMINGYVRVGKLLQARE 316

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           + + +P             +NI +  +MI  Y ++G +  A EIF Q+  RD+  WN+MI
Sbjct: 317 ILNLMPY------------KNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMI 364

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY H    +EA  LF +M   D ++WN M++ YAQ G ++ AL+ F  M ++N+VSWNS
Sbjct: 365 TGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNS 424

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           +I G   N  Y  A+  FI M+ +GEKPD+ T    L  S+ +  L++G+Q+H +  KT 
Sbjct: 425 LITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTG 484

Query: 361 I-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              D+ + NA++TMYA+ G + EA  +F E+K  K+VVSWN++I G A +G   EA+ELF
Sbjct: 485 FGNDLFVKNAILTMYAKSGRVPEAENVFAEIKX-KDVVSWNSLIAGYALNGCGKEAVELF 543

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           + M    ++P  +TF  +LSAC H G V++G   FKSM   Y I+P+ EH+A +++++GR
Sbjct: 544 EVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGR 603

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRLE+A+++++GM       +WGALL ACR+H+N+ELA+ +AE L+ +EP+N++ YVLL
Sbjct: 604 VGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLL 663

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            NM+A+ GRWD    VR+LMK N  +K  G SW++
Sbjct: 664 SNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWIE 698



 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 252/469 (53%), Gaps = 38/469 (8%)

Query: 37  ISSRG-SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWN 95
           IS  G SG +EEA  +F  M ER+ VT+N++IS YAK G +  A  LF+ MP RN+VSWN
Sbjct: 22  ISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWN 81

Query: 96  AMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGG 155
           +MI+G+L N  V +A   FDRM  RD  S + +++   + GEL++A  +      + D  
Sbjct: 82  SMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQD-- 139

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
                  N LI GY ++    EA+KLFD++ V            +N+VSWNS++  Y K 
Sbjct: 140 ---TVCRNALIAGYAKKRLFREAKKLFDEMLV------------KNVVSWNSILSGYTKN 184

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
           G +    + FE M ER+  SWN M+ GY+ V D++ A   F K+P P+ ++W  M+SG+A
Sbjct: 185 GKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFA 244

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
             G +  A + F  MP KNLVSWN+MI         + A KLF++M      P++ + S 
Sbjct: 245 HYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEM------PEKDSVSW 298

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
             +M +G V +   +Q  +++      ++    A+I  Y + G + EA  IF ++  +++
Sbjct: 299 T-AMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQIS-VRD 356

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
            V WN+MI G A  G   EAL LF+ M    V    +++ ++++A A AG +++  + F 
Sbjct: 357 SVCWNSMITGYAHCGRTDEALRLFQEM----VCKDMVSWNTMIAAYAQAGQMDKALEMFN 412

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD---LIKGMPFEPDKAV 501
            M      E  +  + SL+    ++G   +A++   L+K    +PD+  
Sbjct: 413 EMQ-----ERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTT 456



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 190/395 (48%), Gaps = 67/395 (16%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N  I   G+ GR+EEA  +F K+             +RNIV++NSMI  YAK G + +AR
Sbjct: 19  NLRISQLGRSGRIEEAVAVFLKMT------------ERNIVTYNSMISAYAKNGRIANAR 66

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
           E+F+ M +R+  SWN+MI+GY+H   +E+A+ LF +M   D  +W  M++ Y +IG LE 
Sbjct: 67  ELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEK 126

Query: 283 ALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
           A + F  +P K + V  N++IAG    + +  A KLF +M V+    +  +++SILS  +
Sbjct: 127 ARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVK----NVVSWNSILSGYT 182

Query: 342 GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
               + LG+Q                                   FE M   +NVVSWN 
Sbjct: 183 KNGKMQLGLQ----------------------------------FFEAMG-ERNVVSWNL 207

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           M+ G    G    A   FK + +  V+ +++T   +LS  AH G + E R  F  M  + 
Sbjct: 208 MVDGYVGVGDLDSAWMFFKKIPTPNVV-SWVT---MLSGFAHYGRMTEARNLFNEMPTK- 262

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL-GACRVHNNVELAQV 520
                +  + +++    R  +++DA  L   MP E D   W A++ G  RV   ++    
Sbjct: 263 ----NLVSWNAMIGAYVRENQIDDAYKLFMEMP-EKDSVSWTAMINGYVRVGKLLQ---- 313

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           A E L  +  +N      + N Y   GR D+ANE+
Sbjct: 314 AREILNLMPYKNIAAQTAMINGYLQSGRMDEANEI 348


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/575 (39%), Positives = 360/575 (62%), Gaps = 23/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+GY K+R   +A+KLFDEM  ++VVSWN ++SGY  +   G ++     F+ M ER+ 
Sbjct: 146 LIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKN---GKMQLGLQFFEAMGERNV 202

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN ++ GY   G+++ A   F  +P  NVVSW  M+SGF   G +  A   F+ MP +
Sbjct: 203 VSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTK 262

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++   ++  ++D+A ++ ++   +     D V ++  +I GY + G++ +AR+
Sbjct: 263 NLVSWNAMIGAYVRENQIDDAYKLFMEMPEK-----DSV-SWTAMINGYVRVGKLLQARE 316

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           + + +P             +NI +  +MI  Y ++G +  A EIF Q+  RD+  WN+MI
Sbjct: 317 ILNLMPY------------KNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMI 364

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY H    +EA  LF +M   D ++WN M++ YAQ G ++ AL+ F  M ++N+VSWNS
Sbjct: 365 TGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNS 424

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           +I G   N  Y  A+  FI M+ +GEKPD+ T    L  S+ +  L++G+Q+H +  KT 
Sbjct: 425 LITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTG 484

Query: 361 I-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              D+ + NA++TMYA+ G + EA  +F E+K  K+VVSWN++I G A +G   EA+ELF
Sbjct: 485 FGNDLFVKNAILTMYAKSGRVPEAENVFAEIKN-KDVVSWNSLIAGYALNGCGKEAVELF 543

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           + M    ++P  +TF  +LSAC H G V++G   FKSM   Y I+P+ EH+A +++++GR
Sbjct: 544 EVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGR 603

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRLE+A+++++GM       +WGALL ACR+H+N+ELA+ +AE L+ +EP+N++ YVLL
Sbjct: 604 VGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLL 663

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            NM+A+ GRWD    VR+LMK N  +K  G SW++
Sbjct: 664 SNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWIE 698



 Score =  244 bits (624), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 252/469 (53%), Gaps = 38/469 (8%)

Query: 37  ISSRG-SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWN 95
           IS  G SG +EEA  +F  M ER+ VT+N++IS YAK G +  A  LF+ MP RN+VSWN
Sbjct: 22  ISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWN 81

Query: 96  AMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGG 155
           +MI+G+L N  V +A   FDRM  RD  S + +++   + GEL++A  +      + D  
Sbjct: 82  SMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQD-- 139

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
                  N LI GY ++    EA+KLFD++ V            +N+VSWNS++  Y K 
Sbjct: 140 ---TVCRNALIAGYAKKRLFREAKKLFDEMLV------------KNVVSWNSILSGYTKN 184

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
           G +    + FE M ER+  SWN M+ GY+ V D++ A   F K+P P+ ++W  M+SG+A
Sbjct: 185 GKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFA 244

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
             G +  A + F  MP KNLVSWN+MI         + A KLF++M      P++ + S 
Sbjct: 245 HYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEM------PEKDSVSW 298

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
             +M +G V +   +Q  +++      ++    A+I  Y + G + EA  IF ++  +++
Sbjct: 299 T-AMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQIS-VRD 356

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
            V WN+MI G A  G   EAL LF+ M    V    +++ ++++A A AG +++  + F 
Sbjct: 357 SVCWNSMITGYAHCGRTDEALRLFQEM----VCKDMVSWNTMIAAYAQAGQMDKALEMFN 412

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD---LIKGMPFEPDKAV 501
            M      E  +  + SL+    ++G   +A++   L+K    +PD+  
Sbjct: 413 EMQ-----ERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTT 456



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 190/395 (48%), Gaps = 67/395 (16%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N  I   G+ GR+EEA  +F ++             +RNIV++NSMI  YAK G + +AR
Sbjct: 19  NLRISQLGRSGRIEEAVAVFLQMT------------ERNIVTYNSMISAYAKNGRIANAR 66

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
           E+F+ M +R+  SWN+MI+GY+H   +E+A+ LF +M   D  +W  M++ Y +IG LE 
Sbjct: 67  ELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEK 126

Query: 283 ALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
           A + F  +P K + V  N++IAG    + +  A KLF +M V+    +  +++SILS  +
Sbjct: 127 ARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVK----NVVSWNSILSGYT 182

Query: 342 GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
               + LG+Q                                   FE M   +NVVSWN 
Sbjct: 183 KNGKMQLGLQ----------------------------------FFEAMG-ERNVVSWNL 207

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           M+ G    G    A   FK + +  V+ +++T   +LS  AH G + E R  F  M  + 
Sbjct: 208 MVDGYVGVGDLDSAWMFFKKIPTPNVV-SWVT---MLSGFAHYGRMTEARNLFNEMPTK- 262

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL-GACRVHNNVELAQV 520
                +  + +++    R  +++DA  L   MP E D   W A++ G  RV   ++    
Sbjct: 263 ----NLVSWNAMIGAYVRENQIDDAYKLFMEMP-EKDSVSWTAMINGYVRVGKLLQ---- 313

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           A E L  +  +N      + N Y   GR D+ANE+
Sbjct: 314 AREILNLMPYKNIAAQTAMINGYLQSGRMDEANEI 348


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/561 (40%), Positives = 349/561 (62%), Gaps = 25/561 (4%)

Query: 21  MPQRD-VVSWNVMISGYISSRGS--GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEME 77
           +P++D  V  NV    ++ +  S  G + EAR LFD M E D +TW TVISGY K G +E
Sbjct: 41  IPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIE 100

Query: 78  EALRLFNSMPAR-NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG 136
           EA RLF+ + A+ NVV+W AM+ G++++  +++A + F+ MP ++  S + ++ G  QNG
Sbjct: 101 EARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNG 160

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            +D A  +  K   R       V ++NT++    Q GR+EEAR+LFD++P          
Sbjct: 161 RIDSAMYLFEKMPERN------VVSWNTVMSMLAQCGRIEEARRLFDRMP---------- 204

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF 256
             +R+++SW +MI   +K G +  AR +F++M ER+  SWN MI+GY   L ++EA +LF
Sbjct: 205 --ERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLF 262

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
            +MP  D  +WN M++G  Q G+L  A   F  MP+KN++SW +MI GC    + E A+K
Sbjct: 263 ERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALK 322

Query: 317 LFIQM-QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMY 374
           +F +M    G KP++ TF S+L   S +  L  G Q+HQ+++KTV  D   + +ALI MY
Sbjct: 323 IFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMY 382

Query: 375 ARCGAIVEARIIFEE-MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           ++CG +  AR +F++ M   +++VSWN +I   A HG+  EA+  FK MR     P  +T
Sbjct: 383 SKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVT 442

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           ++ +LSAC+HAGLVEEG ++F  +V +  I  R +H+A LVD+ GR GRL++A   I+ +
Sbjct: 443 YVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERL 502

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
             +P   VWGALL  C VH NV++ + AA+ L++VEPEN+  Y+LL N+YA  G+W +A 
Sbjct: 503 ETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAA 562

Query: 554 EVRLLMKSNNIKKPTGYSWVD 574
            VRL MK   +KK  G SW++
Sbjct: 563 RVRLKMKDKGLKKQPGCSWIE 583



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 143/425 (33%), Positives = 227/425 (53%), Gaps = 38/425 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+ GY++  +++ A KLF+EMP ++VVSWN MI GY     +G ++ A YLF+ MPER+ 
Sbjct: 121 MVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQ---NGRIDSAMYLFEKMPERNV 177

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNTV+S  A+ G +EEA RLF+ MP R+V+SW AMI+G  +NG +  A   FDRMP R
Sbjct: 178 VSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPER 237

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A+++G  QN  LDEA  +  +   R     DL  ++NT+I G  Q G +  ARK
Sbjct: 238 NVVSWNAMITGYAQNLRLDEALDLFERMPER-----DLP-SWNTMITGLIQNGDLRRARK 291

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF+++P            K+N++SW +MI    + G+   A +IF +ML  +    N   
Sbjct: 292 LFNEMP------------KKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQ-- 337

Query: 241 SGYIHVL----------DMEEASNLFVKMPHPD-TLTWNAMVSGYAQIGNLELALDFFKR 289
             ++ VL          + ++   +  K  + D T   +A+++ Y++ G L  A   F  
Sbjct: 338 GTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDD 397

Query: 290 --MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVD 345
               Q++LVSWN +IA    +   + AI  F +M+  G KPD  T+  +LS  S  G+V+
Sbjct: 398 GMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVE 457

Query: 346 LHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             L      +  ++++        L+ +  R G + EA    E ++   +   W A++ G
Sbjct: 458 EGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAG 517

Query: 406 CASHG 410
           C  H 
Sbjct: 518 CNVHA 522


>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
 gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
          Length = 756

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/651 (36%), Positives = 381/651 (58%), Gaps = 99/651 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+S       +A+AR+LFDEMP+R+ VSWN M+   ++    G +E+AR LFD MP R+ 
Sbjct: 48  MVSALAHHGRLAEARRLFDEMPRRNPVSWNTMM---VACSQHGRVEDARGLFDAMPARNE 104

Query: 61  VTW--------------------------------NTVISGYAKTGEMEEALRLFNSMPA 88
            +W                                NT+ISGYAK G  E+A+ L   MPA
Sbjct: 105 YSWTIMVSCYVRAGELTLARELLDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPA 164

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC 148
            ++VSWN+++ G ++N +++ +++FFD MP +D  S + ++ G ++ G+LD A+    + 
Sbjct: 165 PDIVSWNSVLGGLIRNEEISRSVQFFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRI 224

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG--------EGNVRF-- 198
            S        V ++  L+ GY Q GR+ EAR+LFD++P   +R          G V+F  
Sbjct: 225 PS------PNVISWVNLVNGYCQAGRMGEARELFDRMP---ERNVVAWNVLLSGYVQFSQ 275

Query: 199 ------------KRNIVSWNSMIMCYAKAG------DVVS-------------------- 220
                       ++N +SW +M+  + ++G      DV+S                    
Sbjct: 276 VEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDNVGAKTALMHGYLKS 335

Query: 221 -----AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
                AR++F+ ++ RD   WNTMISGY+    ++EA  LF +MP+ D ++WN M++G A
Sbjct: 336 NLIDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCA 395

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           Q G +  A   F++M ++N VSWNS+I+G   N  +  A++ F+ M+ + +  D  T++ 
Sbjct: 396 QGGQIRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVEALQHFMLMRRDAKSADWCTYAC 455

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
            LS S+ +  L +G Q H ++ +T  I D    NALI+ YA+CG ++EAR +F+EM +++
Sbjct: 456 CLSASANLATLQIGRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEARQVFDEM-VVQ 514

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           ++VSWNA+I G AS+G  +E + +F+ M +  V P  IT + VLSAC+HAGL++EG   F
Sbjct: 515 DIVSWNALIDGYASNGNGSEVIAVFREMEANSVRPDEITLVVVLSACSHAGLIDEGLHFF 574

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
            SM+  Y ++P  EH+  +VD++GR GRL +A +L++GM  +P+  VWGALLGACRVH N
Sbjct: 575 NSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGMQIQPNAGVWGALLGACRVHKN 634

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
            E+A +AAE L ++EP  ++ YVLL N+  + G+WDDA++VR+LMK + ++
Sbjct: 635 HEIAWLAAEKLFELEPCKASNYVLLSNICVEAGKWDDADKVRVLMKESILR 685



 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 143/457 (31%), Positives = 248/457 (54%), Gaps = 34/457 (7%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           ++   +  ++A AR+LF+EMP+R+VVS+N M+S        G L EAR LFD MP R+ V
Sbjct: 18  LTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAH---HGRLAEARRLFDEMPRRNPV 74

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           +WNT++   ++ G +E+A  LF++MPARN  SW  M+S +++ G++  A E  DRMPG  
Sbjct: 75  SWNTMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGEK 134

Query: 122 SASL-SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
            A+  + ++SG  +NG  ++A  +L +  +      D+V ++N+++ G  +   +  + +
Sbjct: 135 CAACYNTMISGYAKNGRFEDAIALLQEMPA-----PDIV-SWNSVLGGLIRNEEISRSVQ 188

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            FD++P             +++VSWN M+  Y +AGD+  A   F ++   +  SW  ++
Sbjct: 189 FFDEMP------------DKDLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLV 236

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY     M EA  LF +MP  + + WN ++SGY Q   +E A + F  MP+KN +SW +
Sbjct: 237 NGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTT 296

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           M++G   +   + A  +  +M  +          +  ++  G +  +L     Q+    V
Sbjct: 297 MVSGFVRSGKLQEAKDVLSKMPSD-------NVGAKTALMHGYLKSNLIDDARQLFDGIV 349

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
           + D    N +I+ Y +CG + EA ++F++M   K+++SWN MI GCA  G   +A  +F+
Sbjct: 350 VRDAVCWNTMISGYVQCGMLDEAMVLFQQMP-NKDMISWNTMIAGCAQGGQIRKAASIFR 408

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
            M+        +++ S++S     GL  E  QHF  M
Sbjct: 409 KMKRRNT----VSWNSIISGFVQNGLFVEALQHFMLM 441



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 159/366 (43%), Gaps = 55/366 (15%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N  +   A++G + +AR +FE+M  R+  S+N M+S   H   + EA  LF +MP  + +
Sbjct: 15  NQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPV 74

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           +WN M+   +Q G +E A   F  MP +N  SW  M++      +   A +L  +M   G
Sbjct: 75  SWNTMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRM--PG 132

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARI 385
           EK                                        N +I+ YA+ G   +A  
Sbjct: 133 EKC-----------------------------------AACYNTMISGYAKNGRFEDAIA 157

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           + +EM    ++VSWN+++GG   +   + +++ F  M         +++  +L     AG
Sbjct: 158 LLQEMP-APDIVSWNSVLGGLIRNEEISRSVQFFDEMPD----KDLVSWNLMLEGYVRAG 212

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
            ++     F  + +     P +  + +LV+   + GR+ +A +L   MP E +   W  L
Sbjct: 213 DLDVASAFFSRIPS-----PNVISWVNLVNGYCQAGRMGEARELFDRMP-ERNVVAWNVL 266

Query: 506 LGACRVHNNVELAQVAAEALMKVE-PE-NSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
           L        V+ +QV A   + +E PE NS  +  + + +   G+  +A +V   M S+N
Sbjct: 267 LSG-----YVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDN 321

Query: 564 IKKPTG 569
           +   T 
Sbjct: 322 VGAKTA 327


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/578 (38%), Positives = 354/578 (61%), Gaps = 56/578 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE-RD 59
           +I+   K  ++ +AR++F+EMP RDVVSW  +I+GYI     G +EEA+ LFD     ++
Sbjct: 72  LITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKC---GMIEEAKTLFDRNDAIKN 128

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            VTW  ++SGY +   +EEA RLF++MP +NV+SWN MI G+ + G +  A++ F++MP 
Sbjct: 129 VVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPE 188

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           R+                                     V ++NT+I  + QR RV+EA+
Sbjct: 189 RN-------------------------------------VVSWNTVITAFMQRRRVDEAQ 211

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           +LF+++P            +R+++SW +M+   +K G +  AR +F++M  R+  SWNTM
Sbjct: 212 ELFNRMP------------ERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTM 259

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           I GY   + ++EA  LF +MP  +  +WN M++G+ Q G LE A+DFF +M  KN+V+W 
Sbjct: 260 IIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWT 319

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           ++I+G   +   E A+K+F +MQ     KP+  TF S+L   S +  L  G QIHQ+++K
Sbjct: 320 AVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISK 379

Query: 359 TVIPDVP-INNALITMYARCGAIVEARIIFEEMKL-LKNVVSWNAMIGGCASHGFATEAL 416
           TV  +V  + +ALI MY++CG +  AR IF++  +  ++VVSWN MI   A HG   +A+
Sbjct: 380 TVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAI 439

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
            LF  M++    P  +T+I++LSAC+HAGLV+EG + F+++V +  I+ R +HF  LVD+
Sbjct: 440 SLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDL 499

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
            GR GRL++A D IKG+  +P  +VW ALL  C VH +++L ++ AE L++ EPEN+  Y
Sbjct: 500 FGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPENAGTY 559

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           ++L N+YA  G+W +A  VR+ MK   +KK  G SW++
Sbjct: 560 LVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIE 597



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 183/410 (44%), Gaps = 84/410 (20%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH---------VLD--- 248
           N+   N +I    K G +  AR++FE+M +RD  SW  +I+GYI          + D   
Sbjct: 65  NVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRND 124

Query: 249 --------------------MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
                               +EEA  LF  MP  + ++WN M+ GYA+ G ++ ALD F+
Sbjct: 125 AIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFE 184

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS-----SILSMSSGI 343
           +MP++N+VSWN++I      +  + A +LF +M      P+R   S     + LS +  I
Sbjct: 185 KMPERNVVSWNTVITAFMQRRRVDEAQELFNRM------PERDVISWTTMVAGLSKNGRI 238

Query: 344 VDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM------------- 390
            D  L      +  K  + +V   N +I  YA+   + EA  +FE+M             
Sbjct: 239 DDARL------LFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMIT 292

Query: 391 ------KLL-----------KNVVSWNAMIGGCASHGFATEALELFKSMRSF-KVLPTYI 432
                 KL            KNVV+W A+I G    G + EAL++F  M++   V P   
Sbjct: 293 GFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEG 352

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI-K 491
           TF+SVL AC+    + EG+Q    ++++   +   +  ++L+++  + G LE A  +   
Sbjct: 353 TFVSVLGACSKLAALCEGQQ-IHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDD 411

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV--EPENSTPYVLL 539
           G     D   W  ++ A   H +   A    + +  +   P+N T   LL
Sbjct: 412 GSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALL 461


>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
 gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
          Length = 701

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/623 (38%), Positives = 366/623 (58%), Gaps = 62/623 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+       +A AR LFD MP RD  SW VM+S Y  +   G LE AR + D MP   C
Sbjct: 86  MIAALSDHGRVADARGLFDRMPSRDDFSWTVMVSCYARA---GELELARDVLDRMPGDKC 142

Query: 61  VT-WNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
              +N +ISGYAK G  ++A++L   MPA ++ SWN+ ++G  Q+G +  A++FFD M  
Sbjct: 143 TACYNAMISGYAKNGRFDDAVKLLREMPAPDLFSWNSALAGLTQSGQMVRAVQFFDEMVE 202

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           +D  S + ++ G ++ G+LD AA    +  S        V ++ TL+ GY + GR+ +AR
Sbjct: 203 KDMVSWNLMLEGFVRAGDLDAAASFFGRIES------PNVVSWVTLLNGYCRAGRISDAR 256

Query: 180 KLFDKIP----VNCD-RGEGNVRFKR--------------NIVSWNSMIMCYAKAGD--- 217
            LFD++P    V C+   +G VR  R              N +SW ++I   A+AG    
Sbjct: 257 DLFDRMPERNVVACNVMLDGYVRLSRLEEACKLFDEMPGKNSISWTTIISGLARAGKLQE 316

Query: 218 ----------------------------VVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
                                       V  AR+IF+ M   DT  WNTMISGY+    +
Sbjct: 317 AKDLLDKMSFNCVAAKTALMHGYLQRNMVNDARQIFDGMEVHDTVCWNTMISGYVQRGML 376

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           EEA  LF +MP+ DT++WN M++GYAQ G +  A+  F+RM +KN VSWNS+I+G   N 
Sbjct: 377 EEAMLLFQRMPNKDTVSWNTMIAGYAQGGQMRKAIGIFRRMSRKNTVSWNSVISGFVQNG 436

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINN 368
            +  A   F+ M+    + D  T++S L   + +  LH+G Q+H ++ ++  I D+   N
Sbjct: 437 LFVDAFHHFMLMRRGTNRADWSTYASCLRACANLAALHVGRQLHSLLVRSGHINDLFARN 496

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           ALI+ YA+CG ++EA+ IF+EM + K++VSWNA++ G AS+G  TEA+ +F+ M +  V 
Sbjct: 497 ALISTYAKCGRMLEAKQIFDEM-VGKDIVSWNALVDGYASNGQGTEAISVFREMEANGVR 555

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P  +TF+ +LSAC+ AGL++EG   F SM  EY ++P  EH+A + D++GR G+L +A +
Sbjct: 556 PDEVTFVGILSACSRAGLIDEGLGFFNSMTEEYSLKPVAEHYACMADLLGRAGKLNEAFE 615

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           L++GM  +P+  VWGALLGAC+++ N ELA++AAE L ++EP  ++ YVLL N+ A+ G+
Sbjct: 616 LVQGMQIQPNAGVWGALLGACQMYKNHELARLAAEKLSELEPCRASNYVLLSNISAEAGK 675

Query: 549 WDDANEVRLLMKSNNIKKPTGYS 571
           WD+A + R  +K     KP G +
Sbjct: 676 WDEAEKARASIKEKGANKPPGLA 698



 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 160/521 (30%), Positives = 252/521 (48%), Gaps = 77/521 (14%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           SG L  AR LFD MP R+ VT+N+++S  A+ G ++EA  LF+ MP+RN VSWNAMI+  
Sbjct: 31  SGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPSRNAVSWNAMIAAL 90

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC-GSRCDGGEDLVR 160
             +G VA+A   FDRMP RD  S + +VS   + GEL+ A  VL +  G +C        
Sbjct: 91  SDHGRVADARGLFDRMPSRDDFSWTVMVSCYARAGELELARDVLDRMPGDKCTA------ 144

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
            YN +I GY + GR ++A KL  ++P              ++ SWNS +    ++G +V 
Sbjct: 145 CYNAMISGYAKNGRFDDAVKLLREMPAP------------DLFSWNSALAGLTQSGQMVR 192

Query: 221 AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNL 280
           A + F++M+E+D  SWN M+ G++   D++ A++ F ++  P+ ++W  +++GY + G +
Sbjct: 193 AVQFFDEMVEKDMVSWNLMLEGFVRAGDLDAAASFFGRIESPNVVSWVTLLNGYCRAGRI 252

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM------------------- 321
             A D F RMP++N+V+ N M+ G       E A KLF +M                   
Sbjct: 253 SDARDLFDRMPERNVVACNVMLDGYVRLSRLEEACKLFDEMPGKNSISWTTIISGLARAG 312

Query: 322 --QVEGEKPDRHTFSSILSMSS---GIVDLHL---------GMQIHQMVT-KTVIP---- 362
             Q   +  D+ +F+ + + ++   G +  ++         GM++H  V   T+I     
Sbjct: 313 KLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMVNDARQIFDGMEVHDTVCWNTMISGYVQ 372

Query: 363 -----------------DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
                            D    N +I  YA+ G + +A  IF  M   KN VSWN++I G
Sbjct: 373 RGMLEEAMLLFQRMPNKDTVSWNTMIAGYAQGGQMRKAIGIFRRMS-RKNTVSWNSVISG 431

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
              +G   +A   F  MR       + T+ S L ACA+   +  GRQ    +V    I  
Sbjct: 432 FVQNGLFVDAFHHFMLMRRGTNRADWSTYASCLRACANLAALHVGRQLHSLLVRSGHIND 491

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
                A L+    + GR+ +A  +   M    D   W AL+
Sbjct: 492 LFARNA-LISTYAKCGRMLEAKQIFDEM-VGKDIVSWNALV 530



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 197/414 (47%), Gaps = 37/414 (8%)

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
           N  ++   ++G +A A   FD MP R++ + ++++S L ++G +DEA  +     SR   
Sbjct: 22  NQELTRLARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPSRN-- 79

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
                 ++N +I      GRV +AR LFD++P             R+  SW  M+ CYA+
Sbjct: 80  ----AVSWNAMIAALSDHGRVADARGLFDRMP------------SRDDFSWTVMVSCYAR 123

Query: 215 AGDVVSAREIFEQML-ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
           AG++  AR++ ++M  ++ T  +N MISGY      ++A  L  +MP PD  +WN+ ++G
Sbjct: 124 AGELELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAVKLLREMPAPDLFSWNSALAG 183

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
             Q G +  A+ FF  M +K++VSWN M+ G     D + A   F ++    E P+  ++
Sbjct: 184 LTQSGQMVRAVQFFDEMVEKDMVSWNLMLEGFVRAGDLDAAASFFGRI----ESPNVVSW 239

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLL 393
            ++L   +G            +  +    +V   N ++  Y R   + EA  +F+EM   
Sbjct: 240 VTLL---NGYCRAGRISDARDLFDRMPERNVVACNVMLDGYVRLSRLEEACKLFDEMP-G 295

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           KN +SW  +I G A  G   EA +L   M SF  +       +++       +V + RQ 
Sbjct: 296 KNSISWTTIISGLARAGKLQEAKDLLDKM-SFNCVAAK---TALMHGYLQRNMVNDARQI 351

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           F  M     +      + +++    + G LE+AM L + MP   D   W  ++ 
Sbjct: 352 FDGMEVHDTV-----CWNTMISGYVQRGMLEEAMLLFQRMP-NKDTVSWNTMIA 399


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/629 (38%), Positives = 366/629 (58%), Gaps = 75/629 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+       +A AR LFD MP RD  SW VM+S Y  +RG G LE AR + D MP   C
Sbjct: 86  MIAALSDHGRVADARSLFDRMPVRDEFSWTVMVSCY--ARG-GDLELARDVLDRMPGDKC 142

Query: 61  VT-WNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
              +N +ISGYAK G  ++A++L   MPA ++VSWN+ ++G  Q+G++  A++FFD M  
Sbjct: 143 TACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEMV- 201

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGS------------RCDGG------------ 155
           +D  S + +++G ++ G+L+ A+    K  S             C  G            
Sbjct: 202 KDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRM 261

Query: 156 -EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
            E  V A+N ++ GY     +EEA KLFD++P+            +N +SW ++I   A+
Sbjct: 262 PERNVVAWNVMLDGYVHLSPIEEACKLFDEMPI------------KNSISWTTIISGLAR 309

Query: 215 AGDVV-------------------------------SAREIFEQMLERDTFSWNTMISGY 243
           AG +                                 AR IF+ M   DT  WNTMISGY
Sbjct: 310 AGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARRIFDGMEVHDTVCWNTMISGY 369

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
           +    +EEA  LF +MP+ D ++WN M++GYAQ G +  A+  F+RM ++N VSWNS+I+
Sbjct: 370 VQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVIS 429

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIP 362
           G   N  +  A+  F+ M+    + D  T++S L   + +  LH+G Q+H ++ ++  I 
Sbjct: 430 GFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHIN 489

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           D    NALI+ YA+CG I+EA+ IF+EM + K++VSWNA+I G AS+G  TEA+ +F+ M
Sbjct: 490 DSFAGNALISTYAKCGRILEAKQIFDEM-VYKDIVSWNALIDGYASNGQGTEAIAVFREM 548

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
            +  V P  +TF+ +LSAC+HAGL++EG   F SM  EY ++P  EH+A +VD++GR G+
Sbjct: 549 EANGVRPDEVTFVGILSACSHAGLIDEGLFFFYSMTKEYLLKPVAEHYACMVDLLGRAGK 608

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           L +A +L++GM  +P+  VWGALLGAC +H N ELAQ+AAE L ++EP  ++ YVLL N+
Sbjct: 609 LNEAFELVQGMQIQPNAGVWGALLGACHMHKNHELAQLAAERLSELEPRKASNYVLLSNI 668

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYS 571
            A+ G+WD++ + R  +K   + KP G +
Sbjct: 669 SAEAGKWDESEKARASIKEKGVNKPPGLA 697



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 158/523 (30%), Positives = 261/523 (49%), Gaps = 82/523 (15%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           SG L  AR LFD MP R+ VT+N ++S  A+ G ++EA  LF+ MP RN VSWNAMI+  
Sbjct: 31  SGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAAL 90

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC-GSRCDGGEDLVR 160
             +G VA+A   FDRMP RD  S + +VS   + G+L+ A  VL +  G +C        
Sbjct: 91  SDHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGDLELARDVLDRMPGDKCTA------ 144

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
            YN +I GY + GR ++A KL  ++P              ++VSWNS +    ++G++V 
Sbjct: 145 CYNAMISGYAKNGRFDDAMKLLREMPAP------------DLVSWNSALAGLTQSGEMVR 192

Query: 221 AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNL 280
           A + F++M+ +D  SWN M++G++   D+  AS+ F K+  P+ ++W  +++GY + G +
Sbjct: 193 AVQFFDEMV-KDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRI 251

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG--------------- 325
             A D F RMP++N+V+WN M+ G       E A KLF +M ++                
Sbjct: 252 ADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSISWTTIISGLARAG 311

Query: 326 ------EKPDRHTFSSILSMSS---GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYAR 376
                 +  D+ +F+ + + ++   G +  ++     ++     + D    N +I+ Y +
Sbjct: 312 KLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARRIFDGMEVHDTVCWNTMISGYVQ 371

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-------------- 422
           CG + EA ++F+ M   K++VSWN MI G A  G   +A+ +F+ M              
Sbjct: 372 CGILEEAMLLFQRMP-NKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISG 430

Query: 423 -----RSFKVLPTYI------------TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
                R    L  ++            T+ S L ACA+  ++  GRQ    +V    I  
Sbjct: 431 FVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHIN- 489

Query: 466 RIEHFA--SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             + FA  +L+    + GR+ +A  +   M ++ D   W AL+
Sbjct: 490 --DSFAGNALISTYAKCGRILEAKQIFDEMVYK-DIVSWNALI 529



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 138/309 (44%), Gaps = 38/309 (12%)

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           A++G + +AR +F+ M  R+T ++N M+S       ++EA  LF  MP  +T++WNAM++
Sbjct: 29  ARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIA 88

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
             +  G +  A   F RMP ++  SW  M++      D E A  +  +M      P    
Sbjct: 89  ALSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGDLELARDVLDRM------PGDKC 142

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
            +   +M SG           +++ +   PD+   N+ +    + G +V A   F+EM  
Sbjct: 143 TACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEM-- 200

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
           +K++ SWN M+ G    G    A   F  + S    P  I+++++L+    AG + + R 
Sbjct: 201 VKDMTSWNLMLAGFVRTGDLNAASSFFAKIES----PNVISWVTLLNGYCRAGRIADARD 256

Query: 453 HFKSM---------------VNEYGIEPRIEHF-----------ASLVDIVGRHGRLEDA 486
            F  M               V+   IE   + F            +++  + R G+L++A
Sbjct: 257 LFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSISWTTIISGLARAGKLQEA 316

Query: 487 MDLIKGMPF 495
            DL+  M F
Sbjct: 317 KDLLDKMSF 325


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/575 (40%), Positives = 349/575 (60%), Gaps = 23/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GY     +  A  LF  +P+ D  S+N ++     S     L +AR LFD MP RD 
Sbjct: 75  MLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSS---LADARGLFDEMPVRDS 131

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           VT+N +IS +A  G +  A   F+  P ++ VSWN M++ +++NG V  A   F+     
Sbjct: 132 VTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW 191

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D+ S +AL+SG +Q G++ EA  +  +       G D+V ++N ++ GY +RG + EAR+
Sbjct: 192 DAISWNALMSGYVQWGKMSEARELFDRMP-----GRDVV-SWNIMVSGYARRGDMVEARR 245

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD  PV            R++ +W +++  YA+ G +  AR +F+ M ER+  SWN M+
Sbjct: 246 LFDAAPV------------RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMV 293

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           + YI    M+EA  LF  MP  +  +WN M++GYAQ G LE A   F  MPQK+ VSW +
Sbjct: 294 AAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAA 353

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKT 359
           M+A        E  ++LFI+M   GE  +R  F+ +LS  + I  L  GMQ+H +++   
Sbjct: 354 MLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAG 413

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
                 + NAL+ MY +CG + +AR  FEEM+  ++VVSWN MI G A HGF  EALE+F
Sbjct: 414 YGVGCFVGNALLAMYFKCGNMEDARNAFEEMEE-RDVVSWNTMIAGYARHGFGKEALEIF 472

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             MR+    P  IT + VL+AC+H+GLVE+G  +F SM +++G+  + EH+  ++D++GR
Sbjct: 473 DMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGR 532

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRL +A DL+K MPFEPD  +WGALLGA R+H N EL + AAE + ++EPEN+  YVLL
Sbjct: 533 AGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLL 592

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+YA  G+W DA ++R++M+   +KK  G+SW++
Sbjct: 593 SNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIE 627



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 167/348 (47%), Gaps = 34/348 (9%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N  I  + + GRV +A +LF  +P            +R+  ++N+M+  Y+  G +  A 
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMP------------RRSTSTYNAMLAGYSANGRLPLAA 89

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
            +F  +   D +S+NT++        + +A  LF +MP  D++T+N M+S +A  G + L
Sbjct: 90  SLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSL 149

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL--SMS 340
           A  +F   P+K+ VSWN M+A    N   E A  LF           R  + +I   ++ 
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF---------NSRTEWDAISWNALM 200

Query: 341 SGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
           SG V      +  ++  +    DV   N +++ YAR G +VEAR +F+    +++V +W 
Sbjct: 201 SGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP-VRDVFTWT 259

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           A++ G A +G   EA  +F +M         +++ ++++A     +++E ++ F  M   
Sbjct: 260 AVVSGYAQNGMLEEARRVFDAMPERNA----VSWNAMVAAYIQRRMMDEAKELFNMMPCR 315

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
                 +  + +++    + G LE+A  +   MP + D   W A+L A
Sbjct: 316 -----NVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 357


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/575 (40%), Positives = 348/575 (60%), Gaps = 23/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GY     +  A  LF  +P+ D  S+N ++     S     L +AR LFD MP RD 
Sbjct: 75  MLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSS---LADARGLFDEMPVRDS 131

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           VT+N +IS +A  G +  A   F+  P ++ VSWN M++ +++NG V  A   F+     
Sbjct: 132 VTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW 191

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  S +AL+SG +Q G++ EA  +  +       G D+V ++N ++ GY +RG + EAR+
Sbjct: 192 DVISWNALMSGYVQWGKMSEARELFDRMP-----GRDVV-SWNIMVSGYARRGDMVEARR 245

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD  PV            R++ +W +++  YA+ G +  AR +F+ M ER+  SWN M+
Sbjct: 246 LFDAAPV------------RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMV 293

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           + YI    M+EA  LF  MP  +  +WN M++GYAQ G LE A   F  MPQK+ VSW +
Sbjct: 294 AAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAA 353

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKT 359
           M+A        E  ++LFI+M   GE  +R  F+ +LS  + I  L  GMQ+H +++   
Sbjct: 354 MLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAG 413

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
                 + NAL+ MY +CG + +AR  FEEM+  ++VVSWN MI G A HGF  EALE+F
Sbjct: 414 YGVGCFVGNALLAMYFKCGNMEDARNAFEEMEE-RDVVSWNTMIAGYARHGFGKEALEIF 472

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             MR+    P  IT + VL+AC+H+GLVE+G  +F SM +++G+  + EH+  ++D++GR
Sbjct: 473 DMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGR 532

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRL +A DL+K MPFEPD  +WGALLGA R+H N EL + AAE + ++EPEN+  YVLL
Sbjct: 533 AGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLL 592

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+YA  G+W DA ++R++M+   +KK  G+SW++
Sbjct: 593 SNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIE 627



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 167/349 (47%), Gaps = 36/349 (10%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N  I  + + GRV +A +LF  +P            +R+  ++N+M+  Y+  G +  A 
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMP------------RRSTSTYNAMLAGYSANGRLPLAA 89

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
            +F  +   D +S+NT++        + +A  LF +MP  D++T+N M+S +A  G + L
Sbjct: 90  SLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSL 149

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS---M 339
           A  +F   P+K+ VSWN M+A    N   E A  LF          +  T   ++S   +
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----------NSRTEWDVISWNAL 199

Query: 340 SSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
            SG V      +  ++  +    DV   N +++ YAR G +VEAR +F+    +++V +W
Sbjct: 200 MSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP-VRDVFTW 258

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
            A++ G A +G   EA  +F +M         +++ ++++A     +++E ++ F  M  
Sbjct: 259 TAVVSGYAQNGMLEEARRVFDAMPERNA----VSWNAMVAAYIQRRMMDEAKELFNMMPC 314

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
                  +  + +++    + G LE+A  +   MP + D   W A+L A
Sbjct: 315 R-----NVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 357


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/578 (38%), Positives = 353/578 (61%), Gaps = 56/578 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE-RD 59
           +I+   K  ++ +AR++F+EMP RDVVSW  +I+GYI     G +EEA+ LFD     ++
Sbjct: 72  LITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKC---GMIEEAKTLFDRNDAIKN 128

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            VTW  ++SGY +   +EEA RLF++MP +NV+SWN MI G+ + G +  A++ F+ MP 
Sbjct: 129 VVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPE 188

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           R+                                     V ++NT+I  + QR RV+EA+
Sbjct: 189 RN-------------------------------------VVSWNTVITAFMQRRRVDEAQ 211

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           +LF+++P            +R+++SW +M+   +K G +  AR +F++M  R+  SWNTM
Sbjct: 212 ELFNRMP------------ERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTM 259

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           I GY   + ++EA  LF +MP  +  +WN M++G+ Q G LE A+DFF +M  KN+V+W 
Sbjct: 260 IIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWT 319

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           ++I+G   +   E A+K+F +MQ     KP+  TF S+L   S +  L  G QIHQ+++K
Sbjct: 320 AVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISK 379

Query: 359 TVIPDVP-INNALITMYARCGAIVEARIIFEEMKL-LKNVVSWNAMIGGCASHGFATEAL 416
           TV  +V  + +ALI MY++CG +  AR IF++  +  ++VVSWN MI   A HG   +A+
Sbjct: 380 TVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAI 439

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
            LF  M++    P  +T+I++LSAC+HAGLV+EG + F+++V +  I+ R +HF  LVD+
Sbjct: 440 SLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDL 499

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
            GR GRL++A D IKG+  +P  +VW ALL  C VH +++L ++ AE L++ EPEN+  Y
Sbjct: 500 FGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPENAGTY 559

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           ++L N+YA  G+W +A  VR+ MK   +KK  G SW++
Sbjct: 560 LVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIE 597



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 182/410 (44%), Gaps = 84/410 (20%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH---------VLD--- 248
           N+   N +I    K G +  AR++FE+M +RD  SW  +I+GYI          + D   
Sbjct: 65  NVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRND 124

Query: 249 --------------------MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
                               +EEA  LF  MP  + ++WN M+ GYA+ G ++ ALD F+
Sbjct: 125 AIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFE 184

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS-----SILSMSSGI 343
            MP++N+VSWN++I      +  + A +LF +M      P+R   S     + LS +  I
Sbjct: 185 XMPERNVVSWNTVITAFMQRRRVDEAQELFNRM------PERDVISWTTMVAGLSKNGRI 238

Query: 344 VDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM------------- 390
            D  L      +  K  + +V   N +I  YA+   + EA  +FE+M             
Sbjct: 239 DDARL------LFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMIT 292

Query: 391 ------KLL-----------KNVVSWNAMIGGCASHGFATEALELFKSMRSF-KVLPTYI 432
                 KL            KNVV+W A+I G    G + EAL++F  M++   V P   
Sbjct: 293 GFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEG 352

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI-K 491
           TF+SVL AC+    + EG+Q    ++++   +   +  ++L+++  + G LE A  +   
Sbjct: 353 TFVSVLGACSKLAALCEGQQ-IHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDD 411

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV--EPENSTPYVLL 539
           G     D   W  ++ A   H +   A    + +  +   P+N T   LL
Sbjct: 412 GSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALL 461


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/575 (40%), Positives = 348/575 (60%), Gaps = 23/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GY     +  A  LF  +P+ D  S+N ++     S     L +AR LFD MP RD 
Sbjct: 75  MLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSS---LADARGLFDEMPVRDS 131

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           VT+N +IS +A  G +  A   F+  P ++ VSWN M++ +++NG V  A   F+     
Sbjct: 132 VTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW 191

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  S +AL+SG +Q G++ EA  +  +       G D+V ++N ++ GY +RG + EAR+
Sbjct: 192 DVISWNALMSGYVQWGKMSEARELFDRMP-----GRDVV-SWNIMVSGYARRGDMVEARR 245

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD  PV            R++ +W +++  YA+ G +  AR +F+ M ER+  SWN M+
Sbjct: 246 LFDAAPV------------RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMV 293

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           + YI    M+EA  LF  MP  +  +WN M++GYAQ G LE A   F  MPQK+ VSW +
Sbjct: 294 AAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAA 353

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKT 359
           M+A        E  ++LFI+M   GE  +R  F+ +LS  + I  L  GMQ+H +++   
Sbjct: 354 MLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAG 413

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
                 + NAL+ MY +CG + +AR  FEEM+  ++VVSWN MI G A HGF  EALE+F
Sbjct: 414 YGVGCFVGNALLAMYFKCGNMEDARNAFEEMEE-RDVVSWNTMIAGYARHGFGKEALEIF 472

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             MR+    P  IT + VL+AC+H+GLVE+G  +F SM +++G+  + EH+  ++D++GR
Sbjct: 473 DMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGR 532

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRL +A DL+K MPFEPD  +WGALLGA R+H N EL + AAE + ++EPEN+  YVLL
Sbjct: 533 AGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLL 592

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+YA  G+W DA ++R++M+   +KK  G+SW++
Sbjct: 593 SNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIE 627



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 167/349 (47%), Gaps = 36/349 (10%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N  I  + + GRV +A +LF  +P            +R+  ++N+M+  Y+  G +  A 
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMP------------RRSTSTYNAMLAGYSANGRLPLAA 89

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
            +F  +   D +S+NT++        + +A  LF +MP  D++T+N M+S +A  G + L
Sbjct: 90  SLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSL 149

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS---M 339
           A  +F   P+K+ VSWN M+A    N   E A  LF          +  T   ++S   +
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----------NSRTEWDVISWNAL 199

Query: 340 SSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
            SG V      +  ++  +    DV   N +++ YAR G +VEAR +F+    +++V +W
Sbjct: 200 MSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP-VRDVFTW 258

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
            A++ G A +G   EA  +F +M         +++ ++++A     +++E ++ F  M  
Sbjct: 259 TAVVSGYAQNGMLEEARRVFDAMPERNA----VSWNAMVAAYIQRRMMDEAKELFNMMPC 314

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
                  +  + +++    + G LE+A  +   MP + D   W A+L A
Sbjct: 315 R-----NVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 357


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 356/574 (62%), Gaps = 23/574 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+ Y +  ++ KAR +FDEM  ++++SWN +++GY  ++     +EA+ +FD M ER+ 
Sbjct: 104 LITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRP---QEAQNMFDKMSERNT 160

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++WN ++SGY   G + EA  +F+ MP RNVVSW AM+ G+++ G ++ A   F +MP +
Sbjct: 161 ISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEK 220

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S + ++ GL+Q G +DEA R+      +     D+V   N +I GY Q GR+ EAR 
Sbjct: 221 NVVSWTVMLGGLLQEGRIDEACRLFDMMPEK-----DVVTRTN-MIGGYCQVGRLVEARM 274

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD++P            +RN+VSW +MI  Y +   V  AR++FE M E++  SW  M+
Sbjct: 275 LFDEMP------------RRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAML 322

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
            GY +   ++EAS LF  MP    +  NAM+  + Q G +  A   F +M +K+  +W++
Sbjct: 323 KGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSA 382

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKT 359
           MI   E       A++LF  MQ EG +P+  +  S+LS+ +G+ +L  G +IH Q+V   
Sbjct: 383 MIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQ 442

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              DV + + L++MY +CG + +A+ +F+   + K+VV WN++I G A HG   EAL +F
Sbjct: 443 FDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAV-KDVVMWNSIITGYAQHGLGVEALRVF 501

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M    ++P  +TF+ VLSAC++ G V++G + F SM  +Y +E +IEH+A +VD++GR
Sbjct: 502 HDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGR 561

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G+L +AMDLI+ MP E D  +WGALLGACR H  ++LA+VAA+ L+ +EP+N+ P++LL
Sbjct: 562 AGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILL 621

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            N+YA  GRWDD  E+R  M+   + K  G SW+
Sbjct: 622 SNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWI 655



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 220/459 (47%), Gaps = 59/459 (12%)

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGS 150
           ++S N++I+ + + G +  A   FD M  ++  S +++V+G  QN    EA  +  K   
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
           R         ++N L+ GY   G + EAR++FD++P            +RN+VSW +M+ 
Sbjct: 158 RN------TISWNGLVSGYINNGMINEAREVFDRMP------------ERNVVSWTAMVR 199

Query: 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAM 270
            Y K G +  A  +F QM E++  SW  M+ G +    ++EA  LF  MP  D +T   M
Sbjct: 200 GYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNM 259

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
           + GY Q+G L  A   F  MP++N+VSW +MI G   N+  + A KLF  M      P++
Sbjct: 260 IGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM------PEK 313

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM 390
           +  S   +M  G  +     +  ++     I  V   NA+I  + + G + +AR +F++M
Sbjct: 314 NEVSWT-AMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQM 372

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
           +  K+  +W+AMI      G   +ALELF+ M+   + P + + ISVLS CA    ++ G
Sbjct: 373 R-EKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHG 431

Query: 451 RQ-HFKSMVNEYGIEPRI---------------------EHFA--------SLVDIVGRH 480
           R+ H + + +++ ++  +                     + FA        S++    +H
Sbjct: 432 REIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQH 491

Query: 481 GRLEDAMDLIKGMPFE---PDKAVWGALLGACRVHNNVE 516
           G   +A+ +   M F    PD   +  +L AC    NV+
Sbjct: 492 GLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVK 530



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 166/334 (49%), Gaps = 21/334 (6%)

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           I+S NS+I  Y++ G +  AR +F++M +++  SWN++++GY      +EA N+F KM  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            +T++WN +VSGY   G +  A + F RMP++N+VSW +M+ G         A  LF QM
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM 217

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIV 381
                 P+++  S  + M  G++      +  ++       DV     +I  Y + G +V
Sbjct: 218 ------PEKNVVSWTV-MLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLV 270

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
           EAR++F+EM   +NVVSW  MI G   +     A +LF+ M         +++ ++L   
Sbjct: 271 EARMLFDEMP-RRNVVSWTTMITGYVQNQQVDIARKLFEVMPE----KNEVSWTAMLKGY 325

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
            + G ++E  + F +M  +  +        +++   G++G +  A  +   M  E D+  
Sbjct: 326 TNCGRLDEASELFNAMPIKSVVACN-----AMILCFGQNGEVPKARQVFDQMR-EKDEGT 379

Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           W A++   +V+    L   A E    ++ E   P
Sbjct: 380 WSAMI---KVYERKGLELDALELFRMMQREGIRP 410


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 356/574 (62%), Gaps = 23/574 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+ Y +  ++ KAR +FDEM  ++++SWN +++GY  ++     +EA+ +FD M ER+ 
Sbjct: 104 LITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRP---QEAQNMFDKMSERNT 160

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++WN ++SGY   G + EA  +F+ MP RNVVSW AM+ G+++ G ++ A   F +MP +
Sbjct: 161 ISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEK 220

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S + ++ GL+Q G +DEA R+      +     D+V   N +I GY Q GR+ EAR 
Sbjct: 221 NVVSWTVMLGGLLQEGRIDEACRLFDMMPEK-----DVVTRTN-MIGGYCQVGRLVEARM 274

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD++P            +RN+VSW +MI  Y +   V  AR++FE M E++  SW  M+
Sbjct: 275 LFDEMP------------RRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAML 322

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
            GY +   ++EAS LF  MP    +  NAM+  + Q G +  A   F +M +K+  +W++
Sbjct: 323 KGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSA 382

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKT 359
           MI   E       A++LF  MQ EG +P+  +  S+LS+ +G+ +L  G +IH Q+V   
Sbjct: 383 MIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQ 442

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              DV + + L++MY +CG + +A+ +F+   + K+VV WN++I G A HG   EAL +F
Sbjct: 443 FDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAV-KDVVMWNSIITGYAQHGLGVEALRVF 501

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M    ++P  +TF+ VLSAC++ G V++G + F SM  +Y +E +IEH+A +VD++GR
Sbjct: 502 HDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGR 561

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G+L +AMDLI+ MP E D  +WGALLGACR H  ++LA+VAA+ L+ +EP+N+ P++LL
Sbjct: 562 AGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILL 621

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            N+YA  GRWDD  E+R  M+   + K  G SW+
Sbjct: 622 SNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWI 655



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 220/459 (47%), Gaps = 59/459 (12%)

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGS 150
           ++S N++I+ + + G +  A   FD M  ++  S +++V+G  QN    EA  +  K   
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
           R         ++N L+ GY   G + EAR++FD++P            +RN+VSW +M+ 
Sbjct: 158 RN------TISWNGLVSGYINNGMINEAREVFDRMP------------ERNVVSWTAMVR 199

Query: 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAM 270
            Y K G +  A  +F QM E++  SW  M+ G +    ++EA  LF  MP  D +T   M
Sbjct: 200 GYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNM 259

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
           + GY Q+G L  A   F  MP++N+VSW +MI G   N+  + A KLF  M      P++
Sbjct: 260 IGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM------PEK 313

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM 390
           +  S   +M  G  +     +  ++     I  V   NA+I  + + G + +AR +F++M
Sbjct: 314 NEVSWT-AMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQM 372

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
           +  K+  +W+AMI      G   +ALELF+ M+   + P + + ISVLS CA    ++ G
Sbjct: 373 R-EKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHG 431

Query: 451 RQ-HFKSMVNEYGIEPRI---------------------EHFA--------SLVDIVGRH 480
           R+ H + + +++ ++  +                     + FA        S++    +H
Sbjct: 432 REIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQH 491

Query: 481 GRLEDAMDLIKGMPFE---PDKAVWGALLGACRVHNNVE 516
           G   +A+ +   M F    PD   +  +L AC    NV+
Sbjct: 492 GLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVK 530



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 166/334 (49%), Gaps = 21/334 (6%)

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           I+S NS+I  Y++ G +  AR +F++M +++  SWN++++GY      +EA N+F KM  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            +T++WN +VSGY   G +  A + F RMP++N+VSW +M+ G         A  LF QM
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM 217

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIV 381
                 P+++  S  + M  G++      +  ++       DV     +I  Y + G +V
Sbjct: 218 ------PEKNVVSWTV-MLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLV 270

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
           EAR++F+EM   +NVVSW  MI G   +     A +LF+ M         +++ ++L   
Sbjct: 271 EARMLFDEMP-RRNVVSWTTMITGYVQNQQVDIARKLFEVMPE----KNEVSWTAMLKGY 325

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
            + G ++E  + F +M  +  +        +++   G++G +  A  +   M  E D+  
Sbjct: 326 TNCGRLDEASELFNAMPIKSVVACN-----AMILCFGQNGEVPKARQVFDQMR-EKDEGT 379

Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           W A++   +V+    L   A E    ++ E   P
Sbjct: 380 WSAMI---KVYERKGLELDALELFRMMQREGIRP 410


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 348/575 (60%), Gaps = 23/575 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GY     + +A   F  +P+ D  S+N ++     S     L + R LFD MP +D 
Sbjct: 144 MLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSS---LADVRALFDEMPVKDS 200

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V++N +IS +A  G +  A   F+  P ++ VSWN M++ +++NG +  A E FD     
Sbjct: 201 VSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEW 260

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D+ S +AL++G +Q  +++EA ++  K   R     D+V ++NT++ GY +RG + EAR+
Sbjct: 261 DAISWNALMAGYVQRSQIEEAQKMFNKMPQR-----DVV-SWNTMVSGYARRGDMAEARR 314

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD  P+            R++ +W +++  YA+ G +  A+ +F+ M +++  SWN M+
Sbjct: 315 LFDVAPI------------RDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMM 362

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           + Y+    MEEA  LF  MP  +  +WN M++GYAQ G L+ A   F  MPQK+ VSW +
Sbjct: 363 AAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAA 422

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           M+A        E  ++LF +M   GE  +R  F+ +LS  + I  L  GMQ+H  + K  
Sbjct: 423 MLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAG 482

Query: 361 IP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
                 + NAL+ MY +CG++ EA   FEEM+  ++VVSWN MI G A HGF  EALE+F
Sbjct: 483 YGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEE-RDVVSWNTMIAGYARHGFGKEALEVF 541

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
            +MR     P  IT + VL+AC+H+GLVE+G  +F SM  ++G+  + EH+  ++D++GR
Sbjct: 542 DTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGR 601

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRL++A++L+K MPFEPD  +WGALLGA R+H N EL + AAE + ++EPEN+  YVLL
Sbjct: 602 AGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLL 661

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+YA  G+W D +++R +M    +KK  G+SW++
Sbjct: 662 SNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIE 696



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 168/348 (48%), Gaps = 34/348 (9%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N  I  + + GRV +A +LF  +P            +R+  ++N+M+  YA  G +  A 
Sbjct: 111 NRAITAHMRAGRVPDAERLFAAMP------------RRSTSTYNTMLAGYAANGRLPQAL 158

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
             F  +   D+FS+NT++        + +   LF +MP  D++++N M+S +A  G + L
Sbjct: 159 SFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSL 218

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL--SMS 340
           A  +F   P+K+ VSWN M+A    N   + A +LF           R  + +I   ++ 
Sbjct: 219 ARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELF---------DSRTEWDAISWNALM 269

Query: 341 SGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
           +G V      +  +M  K    DV   N +++ YAR G + EAR +F ++  +++V +W 
Sbjct: 270 AGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF-DVAPIRDVFTWT 328

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           A++ G A +G   EA  +F +M         +++ ++++A     ++EE ++ F +M   
Sbjct: 329 AIVSGYAQNGMLEEAKRVFDAMPD----KNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR 384

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
                 +  + +++    + G L++A  +   MP + D   W A+L A
Sbjct: 385 -----NVASWNTMLTGYAQAGMLDEARAIFGMMP-QKDAVSWAAMLAA 426


>gi|222616932|gb|EEE53064.1| hypothetical protein OsJ_35805 [Oryza sativa Japonica Group]
          Length = 841

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/640 (36%), Positives = 372/640 (58%), Gaps = 99/640 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+S       +A+AR+LFDEMP+R+ VSWN M+   ++    G +E+AR LFD MP R+ 
Sbjct: 48  MVSALAHHGRLAEARRLFDEMPRRNPVSWNTMM---VACSQHGRVEDARGLFDAMPARNE 104

Query: 61  VTW--------------------------------NTVISGYAKTGEMEEALRLFNSMPA 88
            +W                                NT+ISGYAK G  E+A+ L   MPA
Sbjct: 105 YSWTIMVSCYVRAGELTLARELLDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPA 164

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC 148
            ++VSWN+++ G ++N +++ +++FFD MP +D  S + ++ G ++ G+LD A+    + 
Sbjct: 165 PDIVSWNSVLGGLIRNEEISRSVQFFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRI 224

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG--------EGNVRF-- 198
            S        V ++  L+ GY Q GR+ EAR+LFD++P   +R          G V+F  
Sbjct: 225 PS------PNVISWVNLVNGYCQAGRMGEARELFDRMP---ERNVVAWNVLLSGYVQFSQ 275

Query: 199 ------------KRNIVSWNSMIMCYAKAG------DVVS-------------------- 220
                       ++N +SW +M+  + ++G      DV+S                    
Sbjct: 276 VEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDNVGAKTALMHGYLKS 335

Query: 221 -----AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
                AR++F+ ++ RD   WNTMISGY+    ++EA  LF +MP+ D ++WN M++G A
Sbjct: 336 NLIDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCA 395

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           Q G +  A   F++M ++N VSWNS+I+G   N  +  A++ F+ M+ + +  D  T++ 
Sbjct: 396 QGGQIRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVEALQHFMLMRRDAKSADWCTYAC 455

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
            LS S+ +  L +G Q H ++ +T  I D    NALI+ YA+CG ++EAR +F+EM +++
Sbjct: 456 CLSASANLATLQIGRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEARQVFDEM-VVQ 514

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           ++VSWNA+I G AS+G  +E + +F+ M +  V P  IT + VLSAC+HAGL++EG   F
Sbjct: 515 DIVSWNALIDGYASNGNGSEVIAVFREMEANSVRPDEITLVVVLSACSHAGLIDEGLHFF 574

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
            SM+  Y ++P  EH+  +VD++GR GRL +A +L++GM  +P+  VWGALLGACRVH N
Sbjct: 575 NSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGMQIQPNAGVWGALLGACRVHKN 634

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANE 554
            E+A +AAE L ++EP  ++ YVLL N+  + G+WDDA++
Sbjct: 635 HEIAWLAAEKLFELEPCKASNYVLLSNICVEAGKWDDADK 674



 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 143/457 (31%), Positives = 248/457 (54%), Gaps = 34/457 (7%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           ++   +  ++A AR+LF+EMP+R+VVS+N M+S        G L EAR LFD MP R+ V
Sbjct: 18  LTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAH---HGRLAEARRLFDEMPRRNPV 74

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           +WNT++   ++ G +E+A  LF++MPARN  SW  M+S +++ G++  A E  DRMPG  
Sbjct: 75  SWNTMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGEK 134

Query: 122 SASL-SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
            A+  + ++SG  +NG  ++A  +L +  +      D+V ++N+++ G  +   +  + +
Sbjct: 135 CAACYNTMISGYAKNGRFEDAIALLQEMPA-----PDIV-SWNSVLGGLIRNEEISRSVQ 188

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            FD++P             +++VSWN M+  Y +AGD+  A   F ++   +  SW  ++
Sbjct: 189 FFDEMP------------DKDLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLV 236

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY     M EA  LF +MP  + + WN ++SGY Q   +E A + F  MP+KN +SW +
Sbjct: 237 NGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTT 296

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           M++G   +   + A  +  +M  +          +  ++  G +  +L     Q+    V
Sbjct: 297 MVSGFVRSGKLQEAKDVLSKMPSD-------NVGAKTALMHGYLKSNLIDDARQLFDGIV 349

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
           + D    N +I+ Y +CG + EA ++F++M   K+++SWN MI GCA  G   +A  +F+
Sbjct: 350 VRDAVCWNTMISGYVQCGMLDEAMVLFQQMP-NKDMISWNTMIAGCAQGGQIRKAASIFR 408

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
            M+        +++ S++S     GL  E  QHF  M
Sbjct: 409 KMKRRNT----VSWNSIISGFVQNGLFVEALQHFMLM 441



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 140/328 (42%), Gaps = 63/328 (19%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N  +   A++G + +AR +FE+M  R+  S+N M+S   H   + EA  LF +MP  + +
Sbjct: 15  NQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPV 74

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW--------------------------- 298
           +WN M+   +Q G +E A   F  MP +N  SW                           
Sbjct: 75  SWNTMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGEK 134

Query: 299 -----NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
                N+MI+G   N  +E AI L  +M      PD  +++S+L           G+  +
Sbjct: 135 CAACYNTMISGYAKNGRFEDAIALLQEMPA----PDIVSWNSVLG----------GLIRN 180

Query: 354 QMVTKTV-----IPDVPIN--NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           + ++++V     +PD  +   N ++  Y R G +  A   F  +    NV+SW  ++ G 
Sbjct: 181 EEISRSVQFFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIP-SPNVISWVNLVNGY 239

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
              G   EA ELF  M    V    + +  +LS       VE     F  M  +  I   
Sbjct: 240 CQAGRMGEARELFDRMPERNV----VAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSIS-- 293

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMP 494
              + ++V    R G+L++A D++  MP
Sbjct: 294 ---WTTMVSGFVRSGKLQEAKDVLSKMP 318



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 152/339 (44%), Gaps = 24/339 (7%)

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
            F  N  ++       +  A  LF +MP  + +++NAMVS  A  G L  A   F  MP+
Sbjct: 11  VFRSNQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPR 70

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           +N VSWN+M+  C  +   E A  LF  M      P R+ +S  + +S  +    L +  
Sbjct: 71  RNPVSWNTMMVACSQHGRVEDARGLFDAM------PARNEYSWTIMVSCYVRAGELTLAR 124

Query: 353 HQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
             +            N +I+ YA+ G   +A  + +EM    ++VSWN+++GG   +   
Sbjct: 125 ELLDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPA-PDIVSWNSVLGGLIRNEEI 183

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
           + +++ F  M    +    +++  +L     AG ++     F  + +     P +  + +
Sbjct: 184 SRSVQFFDEMPDKDL----VSWNLMLEGYVRAGDLDVASAFFSRIPS-----PNVISWVN 234

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE-PE 531
           LV+   + GR+ +A +L   MP E +   W  LL        V+ +QV A   + +E PE
Sbjct: 235 LVNGYCQAGRMGEARELFDRMP-ERNVVAWNVLLSG-----YVQFSQVEAAYNLFIEMPE 288

Query: 532 -NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
            NS  +  + + +   G+  +A +V   M S+N+   T 
Sbjct: 289 KNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDNVGAKTA 327


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/567 (38%), Positives = 353/567 (62%), Gaps = 24/567 (4%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++ +ARKLFD    + + SWN M++GY ++       +AR LFD MP+R+ ++WN ++SG
Sbjct: 32  KIHEARKLFDSCDSKSISSWNSMVAGYFANL---MPRDARKLFDEMPDRNIISWNGLVSG 88

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           Y K GE++EA ++F+ MP RNVVSW A++ G++ NG V  A   F +MP ++  S + ++
Sbjct: 89  YMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVML 148

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
            G +Q+G +D+A ++      +    +++ R   ++I G  + GRV+EAR++FD++    
Sbjct: 149 IGFLQDGRIDDACKLYEMIPDK----DNIAR--TSMIHGLCKEGRVDEAREIFDEMS--- 199

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
                    +R++++W +M+  Y +   V  AR+IF+ M E+   SW +M+ GY+    +
Sbjct: 200 ---------ERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRI 250

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           E+A  LF  MP    +  NAM+SG  Q G +  A   F  M ++N  SW ++I   E N 
Sbjct: 251 EDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNG 310

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINN 368
               A+ LFI MQ +G +P   T  SILS+ + +  LH G Q+H Q+V      DV + +
Sbjct: 311 FELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVAS 370

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR-SFKV 427
            L+TMY +CG +V++++IF+     K+++ WN++I G ASHG   EAL++F  M  S   
Sbjct: 371 VLMTMYIKCGELVKSKLIFDRFPS-KDIIMWNSIISGYASHGLGEEALKVFCEMPLSGST 429

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
            P  +TF++ LSAC++AG+VEEG + ++SM + +G++P   H+A +VD++GR GR  +AM
Sbjct: 430 KPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAM 489

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
           ++I  M  EPD AVWG+LLGACR H+ +++A+  A+ L+++EPENS  Y+LL NMYA  G
Sbjct: 490 EMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQG 549

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVD 574
           RW D  E+R LMK+  ++K  G SW +
Sbjct: 550 RWADVAELRKLMKTRLVRKSPGCSWTE 576



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 224/451 (49%), Gaps = 63/451 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++SGY+K  E+ +ARK+FD MP+R+VVSW  ++ GY+    +G ++ A  LF  MPE++ 
Sbjct: 85  LVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVH---NGKVDVAESLFWKMPEKNK 141

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  ++ G+ + G +++A +L+  +P ++ ++  +MI G  + G V  A E FD M  R
Sbjct: 142 VSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSER 201

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
              + + +V+G  QN  +D+A ++      + +       ++ ++++GY Q GR+E+A +
Sbjct: 202 SVITWTTMVTGYGQNNRVDDARKIFDVMPEKTE------VSWTSMLMGYVQNGRIEDAEE 255

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF+ +PV            + +++ N+MI    + G++  AR +F+ M ER+  SW T+I
Sbjct: 256 LFEVMPV------------KPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVI 303

Query: 241 SGYIHVLDMEEASNLFVKMPHP-------------------------------------- 262
             +       EA +LF+ M                                         
Sbjct: 304 KIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFD 363

Query: 263 -DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            D    + +++ Y + G L  +   F R P K+++ WNS+I+G  ++   E A+K+F +M
Sbjct: 364 VDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEM 423

Query: 322 QVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCG 378
            + G  KP+  TF + LS  S    +  G++I++ +     V P       ++ M  R G
Sbjct: 424 PLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAG 483

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
              EA  + + M +  +   W +++G C +H
Sbjct: 484 RFNEAMEMIDSMTVEPDAAVWGSLLGACRTH 514



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 159/326 (48%), Gaps = 27/326 (8%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N  I   ++ G +  AR++F+    +   SWN+M++GY   L   +A  LF +MP  + +
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           +WN +VSGY + G ++ A   F  MP++N+VSW +++ G   N   + A  LF +M    
Sbjct: 81  SWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM---- 136

Query: 326 EKPDRHTFSSILSMSSGIVDLHL--GMQIHQMVTKTVIPDVPINNALITMYARCGAIVEA 383
             P+++  S  + +   + D  +    ++++M+      D     ++I    + G + EA
Sbjct: 137 --PEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK---DNIARTSMIHGLCKEGRVDEA 191

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
           R IF+EM   ++V++W  M+ G   +    +A ++F  M       T +++ S+L     
Sbjct: 192 REIFDEMS-ERSVITWTTMVTGYGQNNRVDDARKIFDVMPE----KTEVSWTSMLMGYVQ 246

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
            G +E+  + F+ M     ++P I   A ++  +G+ G +  A  +   M  E + A W 
Sbjct: 247 NGRIEDAEELFEVM----PVKPVIACNA-MISGLGQKGEIAKARRVFDSMK-ERNDASWQ 300

Query: 504 ALLGACRVH--NNVELAQVAAEALMK 527
            ++   ++H  N  EL  +    LM+
Sbjct: 301 TVI---KIHERNGFELEALDLFILMQ 323



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 26/199 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +++ Y+K  E+ K++ +FD  P +D++ WN +ISGY S    G  EEA  +F  MP    
Sbjct: 372 LMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYAS---HGLGEEALKVFCEMPLSGS 428

Query: 57  -ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANA 110
            + + VT+   +S  +  G +EE L+++ SM +   V      +  M+    + G    A
Sbjct: 429 TKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEA 488

Query: 111 IEFFDRMPGR-DSASLSALVSGLIQNGELDEA---ARVLVKCGSRCDGGEDLVRAYNTLI 166
           +E  D M    D+A   +L+     + +LD A   A+ L++      G       Y  L 
Sbjct: 489 MEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSG------TYILLS 542

Query: 167 VGYGQRGR---VEEARKLF 182
             Y  +GR   V E RKL 
Sbjct: 543 NMYASQGRWADVAELRKLM 561


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/555 (40%), Positives = 334/555 (60%), Gaps = 54/555 (9%)

Query: 21  MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEAL 80
           MP RD V++NVMIS + +    G +  AR+ FD+ PE+D V+WN +++ Y + G +EEA 
Sbjct: 1   MPVRDSVTYNVMISSHAN---HGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEAR 57

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
            LFNS    +V+SWNA++SG++Q G ++ A E FDRMPGRD  S + +VSG  + G++ E
Sbjct: 58  GLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVE 117

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A R+      R       V  +  ++ GY Q G +EEAR++FD +P            +R
Sbjct: 118 ARRLFDAAPVR------DVFTWTAVVSGYAQNGMLEEARRVFDAMP------------ER 159

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           N VSWN+M+  Y +   +  A+E+F  M  R+  SWNTM++GY     +EEA  +F  MP
Sbjct: 160 NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP 219

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             D ++W AM++ Y+Q                           GC      E  ++LFI+
Sbjct: 220 QKDAVSWAAMLAAYSQ--------------------------GGCS-----EETLQLFIE 248

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGA 379
           M   GE  +R  F+ +LS  + I  L  GMQ+H +++         + NAL+ MY +CG 
Sbjct: 249 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGN 308

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           + +AR  FEEM+  ++VVSWN MI G A HGF  EALE+F  MR+    P  IT + VL+
Sbjct: 309 MEDARNAFEEME-ERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 367

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           AC+H+GLVE+G  +F SM +++G+  + EH+  ++D++GR GRL +A DL+K MPFEPD 
Sbjct: 368 ACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDS 427

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
            +WGALLGA R+H N EL + AAE + ++EPEN+  YVLL N+YA  G+W DA ++R++M
Sbjct: 428 TMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMM 487

Query: 560 KSNNIKKPTGYSWVD 574
           +   +KK  G+SW++
Sbjct: 488 EERGVKKVPGFSWIE 502



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/452 (30%), Positives = 225/452 (49%), Gaps = 66/452 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MIS +     ++ AR  FD  P++D VSWN M++ Y+ +   G +EEAR LF+   E D 
Sbjct: 12  MISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN---GRVEEARGLFNSRTEWDV 68

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++WN ++SGY + G+M EA  LF+ MP R+VVSWN M+SG+ + GD+  A   FD  P R
Sbjct: 69  ISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR 128

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  + +A+VSG  QNG L+EA RV      R         ++N ++  Y QR  ++EA++
Sbjct: 129 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERN------AVSWNAMVAAYIQRRMMDEAKE 182

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF+ +P             RN+ SWN+M+  YA+AG +  A+ +F+ M ++D  SW  M+
Sbjct: 183 LFNMMPC------------RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAML 230

Query: 241 SGYIHVLDMEEASNLFVKMPHP-------------------------------------- 262
           + Y      EE   LF++M                                         
Sbjct: 231 AAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYG 290

Query: 263 -DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
                 NA+++ Y + GN+E A + F+ M ++++VSWN+MIAG   +   + A+++F  M
Sbjct: 291 VGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMM 350

Query: 322 QVEGEKPDRHTFSSILSMS--SGIVDLHLG--MQIHQMVTKTVIPDVPINNALITMYARC 377
           +    KPD  T   +L+    SG+V+  +     +H     T  P+      +I +  R 
Sbjct: 351 RTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPE--HYTCMIDLLGRA 408

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           G + EA  + ++M    +   W A++G    H
Sbjct: 409 GRLAEAHDLMKDMPFEPDSTMWGALLGASRIH 440


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/577 (38%), Positives = 337/577 (58%), Gaps = 56/577 (9%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM-PERDC 60
           IS   +  E+  ARK+F+EMP+RD+  W  MI+GY+     G + EAR LFD    +++ 
Sbjct: 8   ISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKC---GMIREARKLFDRWDAKKNV 64

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           VTW  +++GY K  +++EA RLF  MP RNVVSWN M+ G+ +NG    A++ F RMP R
Sbjct: 65  VTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPER 124

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +                                     V ++NT+I    Q GR+E+A++
Sbjct: 125 N-------------------------------------VVSWNTIITALVQCGRIEDAQR 147

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD++              R++VSW +M+   AK G V  AR +F+QM  R+  SWN MI
Sbjct: 148 LFDQMK------------DRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMI 195

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY     ++EA  LF +MP  D  +WN M++G+ Q G L  A   F  M +KN+++W +
Sbjct: 196 TGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWTA 255

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           M+ G   +   E A+++FI+M    E KP+  TF ++L   S +  L  G QIHQM++KT
Sbjct: 256 MMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKT 315

Query: 360 VIPD-VPINNALITMYARCGAIVEARIIFEEMKL-LKNVVSWNAMIGGCASHGFATEALE 417
           V  D   + +ALI MY++CG +  AR +F++  L  ++++SWN MI   A HG+  EA+ 
Sbjct: 316 VFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAIN 375

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           LF  M+   V    +TF+ +L+AC+H GLVEEG ++F  ++    I+ R +H+A LVD+ 
Sbjct: 376 LFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLC 435

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
           GR GRL++A ++I+G+  E    VWGALL  C VH N ++ ++ AE ++K+EP+N+  Y 
Sbjct: 436 GRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGKLVAEKILKIEPQNAGTYS 495

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           LL NMYA VG+W +A  VR+ MK   +KK  G SW++
Sbjct: 496 LLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCSWIE 532



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 140/457 (30%), Positives = 232/457 (50%), Gaps = 66/457 (14%)

Query: 1   MISGYVKRREMAKARKLFDEM-PQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           MI+GY+K   + +ARKLFD    +++VV+W  M++GYI       ++EA  LF  MP R+
Sbjct: 38  MITGYLKCGMIREARKLFDRWDAKKNVVTWTAMVNGYIKFNQ---VKEAERLFYEMPLRN 94

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            V+WNT++ GYA+ G  ++AL LF  MP RNVVSWN +I+  +Q G + +A   FD+M  
Sbjct: 95  VVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWNTIITALVQCGRIEDAQRLFDQMKD 154

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           RD  S + +V+GL +NG +++A  +  +   R       V ++N +I GY Q  R++EA 
Sbjct: 155 RDVVSWTTMVAGLAKNGRVEDARALFDQMPVRN------VVSWNAMITGYAQNRRLDEAL 208

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           +LF ++P            +R++ SWN+MI  + + G++  A ++F +M E++  +W  M
Sbjct: 209 QLFQRMP------------ERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWTAM 256

Query: 240 ISGYIHVLDMEEASNLFVKM-----PHPDTLTW--------------------------- 267
           ++GY+     EEA  +F+KM       P+T T+                           
Sbjct: 257 MTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTV 316

Query: 268 --------NAMVSGYAQIGNLELALDFFKR--MPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                   +A+++ Y++ G L  A   F    + Q++L+SWN MIA    +   + AI L
Sbjct: 317 FQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINL 376

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINN--ALITMYA 375
           F +MQ  G   +  TF  +L+  S    +  G +    + K     +  ++   L+ +  
Sbjct: 377 FNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCG 436

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
           R G + EA  I E +     +  W A++ GC  HG A
Sbjct: 437 RAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNA 473


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/574 (38%), Positives = 348/574 (60%), Gaps = 23/574 (4%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           IS + +  ++ +AR +FD++  + V SWN +++GY  ++      EA+ LFD MPER+ +
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPA---EAQKLFDKMPERNTI 79

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           +WN ++SGY K G + EA ++F+ MP RNVVSW +M+ G++Q G +  A   F RMP ++
Sbjct: 80  SWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKN 139

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S + ++ GLI++G +DEA R+      +     D+V + N +I G    GR+ EAR++
Sbjct: 140 VVSWTVMLGGLIEDGRVDEARRLFDMIPVK-----DVVASTN-MIGGLCSEGRLSEAREI 193

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           FD++P            +RN+V+W SMI  YA    V  AR++FE M +++  +W  M+ 
Sbjct: 194 FDEMP------------QRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLK 241

Query: 242 GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           GY     + EA+ LF  MP       N M+ G+   G +  A   F +M +K+  +W+++
Sbjct: 242 GYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSAL 301

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTV 360
           I   E       A+ LF  MQ EG +P+  +  SILS+   +  L  G Q+H Q+V    
Sbjct: 302 IKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHF 361

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
             D+ +++ LITMY +CG +V  + +F+     K++V WN++I G A HGF  +ALE+F 
Sbjct: 362 DLDIYVSSVLITMYIKCGDLVTGKRVFDRFSS-KDIVMWNSIIAGYAQHGFGEKALEVFH 420

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M S    P  ITFI VLSAC + G V+EG + F+SM ++Y ++ + EH+A +VD++GR 
Sbjct: 421 EMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRA 480

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G+L +AM+LI+ MP E D  VWGALL ACR H N++LA++AA+ L+++EP ++ PY+LL 
Sbjct: 481 GKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLS 540

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N+YA   RW D  E+R  M++ N+ K  G SW++
Sbjct: 541 NLYASQSRWKDVAELRKTMRARNVSKSPGCSWIE 574



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 125/450 (27%), Positives = 215/450 (47%), Gaps = 62/450 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++SGYVK   +++ARK+FD+MP+R+VVSW  M+ GY+     G ++EA  LF  MPE++ 
Sbjct: 84  LVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQ---EGLIDEAELLFWRMPEKNV 140

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  ++ G  + G ++EA RLF+ +P ++VV+   MI G    G ++ A E FD MP R
Sbjct: 141 VSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQR 200

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  + ++++SG   N ++D A ++      + +        +  ++ GY + GR+ EA +
Sbjct: 201 NVVAWTSMISGYAMNNKVDVARKLFEVMPDKNE------VTWTAMLKGYTRSGRINEAAE 254

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF  +PV            + + + N MIM +   G+V  AR +F+QM E+D  +W+ +I
Sbjct: 255 LFKAMPV------------KPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALI 302

Query: 241 SGYIHVLDMEEASNLFVKMPHP-------------------------------------- 262
             Y       EA  LF  M                                         
Sbjct: 303 KIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFD 362

Query: 263 -DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            D    + +++ Y + G+L      F R   K++V WNS+IAG   +   E A+++F +M
Sbjct: 363 LDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEM 422

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINN--ALITMYARCGA 379
              G  PD  TF  +LS       +  G++I + +      D    +   ++ +  R G 
Sbjct: 423 FSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGK 482

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           + EA  + E M +  + + W A++  C +H
Sbjct: 483 LNEAMNLIENMPVEADAIVWGALLSACRTH 512



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 11/143 (7%)

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           I    I+ +AR G I  AR IF++++  K V SWNA++ G   +    EA +LF  M   
Sbjct: 18  ITQCQISYFARLGQIDRARNIFDDLQ-SKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPER 76

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
                 I++  ++S     G++ E R+ F  M      E  +  + S+V    + G +++
Sbjct: 77  NT----ISWNGLVSGYVKNGMISEARKVFDKMP-----ERNVVSWTSMVRGYVQEGLIDE 127

Query: 486 AMDLIKGMPFEPDKAVWGALLGA 508
           A  L   MP E +   W  +LG 
Sbjct: 128 AELLFWRMP-EKNVVSWTVMLGG 149


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/576 (40%), Positives = 345/576 (59%), Gaps = 26/576 (4%)

Query: 2   ISGYVKRREMAKARKLFDE--MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           IS Y +  ++  ARK+FD   +PQR + SWN M+S Y  S       +A  LFD MP+R+
Sbjct: 26  ISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKP---RDALLLFDQMPQRN 82

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            V++N +ISGY K G + +A ++F+ MP RNVVSW +M+ G++Q G V  A + F  MP 
Sbjct: 83  TVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPR 142

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           R+  S + ++ GL++   +D+A ++      +     D+V   N +I GY Q GR++EAR
Sbjct: 143 RNVVSWTVMIGGLLKESRIDDAKKLFDMIPEK-----DVVVVTN-MIGGYCQVGRLDEAR 196

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           +LFD++ V            RN+ +W +M+  YAK G V  AR++FE M ER+  SW  M
Sbjct: 197 ELFDEMKV------------RNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAM 244

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           + GY     M+EA  LF  MP    +  N M+  +   G +  A   F+ M +++  +WN
Sbjct: 245 LMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWN 304

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTK 358
           +MI   E       A+ LF +MQ EG   +  +  S+LS+ + +  L  G Q+H ++V  
Sbjct: 305 AMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRS 364

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
               D+ + + LITMY +CG +V A+ IF    L K+VV WN+MI G + HG   EAL +
Sbjct: 365 EFDQDLYVASVLITMYVKCGDLVRAKGIFNRF-LFKDVVMWNSMITGYSQHGLGEEALNV 423

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  M S  V P  +TFI VLSAC+++G V+EG + F++M   Y +EP IEH+A +VD++G
Sbjct: 424 FHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLG 483

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           R GR+++AM+L++ MP EPD  VWGALLGACR H  ++LA+VA E L K+EP+N+ PYVL
Sbjct: 484 RAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVL 543

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           L +MYA  GRW D   +R  +    IK P G SW++
Sbjct: 544 LSHMYATKGRWRDVEVLRKKINRRVIKFP-GCSWIE 578



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 222/451 (49%), Gaps = 64/451 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGYVK   +A ARK+FD MP+R+VVSW  M+ GY+     G +EEA  LF  MP R+ 
Sbjct: 89  MISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQ---EGMVEEAEKLFWEMPRRNV 145

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  +I G  K   +++A +LF+ +P ++VV    MI G+ Q G +  A E FD M  R
Sbjct: 146 VSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVR 205

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  + + +VSG  +NG +D A ++      R +       ++  +++GY Q GR++EA +
Sbjct: 206 NVFTWTTMVSGYAKNGRVDVARKLFEVMPERNE------VSWTAMLMGYTQSGRMKEAFE 259

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF+ +PV            + IV+ N MI+ +  AG++  AR +FE M ERD  +WN MI
Sbjct: 260 LFEAMPV------------KWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMI 307

Query: 241 SGYIHV-LDMEEASNLFVKMPH-------------------------------------- 261
             +    LD+ EA  LF +M                                        
Sbjct: 308 KVFERKGLDL-EALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEF 366

Query: 262 -PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             D    + +++ Y + G+L  A   F R   K++V WNSMI G   +   E A+ +F  
Sbjct: 367 DQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHD 426

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV--TKTVIPDVPINNALITMYARCG 378
           M   G +PD  TF  +LS  S    +  G +I + +  T  V P +     ++ +  R G
Sbjct: 427 MCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAG 486

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            + EA  + E+M +  + + W A++G C +H
Sbjct: 487 RVDEAMELVEKMPMEPDAIVWGALLGACRNH 517



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 140/507 (27%), Positives = 236/507 (46%), Gaps = 67/507 (13%)

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDR--MPGRDSASLSALVSGLIQNGELDEAARVL 145
           AR++ S  + IS + + GD+ NA + FD   +P R  AS +A+VS   ++ +  +A  + 
Sbjct: 16  ARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLF 75

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
            +   R         ++N +I GY + G V +ARK+FD +P            +RN+VSW
Sbjct: 76  DQMPQRN------TVSFNGMISGYVKNGMVADARKVFDVMP------------ERNVVSW 117

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
            SM+  Y + G V  A ++F +M  R+  SW  MI G +    +++A  LF  +P  D +
Sbjct: 118 TSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVV 177

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
               M+ GY Q+G L+ A + F  M  +N+ +W +M++G   N   + A KLF  M    
Sbjct: 178 VVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVM---- 233

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARI 385
             P+R+  S   +M  G        +  ++     +  +   N +I  +   G +  AR+
Sbjct: 234 --PERNEVSWT-AMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARM 290

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +FE MK  ++  +WNAMI      G   EAL LF  M+   V   + + ISVLS CA   
Sbjct: 291 MFEGMK-ERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLA 349

Query: 446 LVEEGRQ-HFKSMVNEY------------------------GIEPR-----IEHFASLVD 475
            ++ GRQ H + + +E+                        GI  R     +  + S++ 
Sbjct: 350 SLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMIT 409

Query: 476 IVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGAC----RVHNNVELAQVAAEALMKV 528
              +HG  E+A+++   M     +PD+  +  +L AC    +V    E+ + A +   +V
Sbjct: 410 GYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFE-AMKCTYQV 468

Query: 529 EPENSTPYVLLYNMYADVGRWDDANEV 555
           EP     Y  + ++    GR D+A E+
Sbjct: 469 EP-GIEHYACMVDLLGRAGRVDEAMEL 494


>gi|359477774|ref|XP_002282129.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 691

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/602 (36%), Positives = 351/602 (58%), Gaps = 57/602 (9%)

Query: 13  KARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAK 72
           +A+ LFDEMPQR+ V++N MI GY  +   G   E   LFD MPERD  ++NT+I+G  K
Sbjct: 59  EAQMLFDEMPQRNTVTYNAMIRGYFQN---GHFGEGVSLFDEMPERDIFSYNTMIAGLMK 115

Query: 73  TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGL 132
            G++  A  +F  MP R+VVSWN+MISG++ NG +  A+  F  M  +D  S + +++GL
Sbjct: 116 FGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGMVLKDVVSWNLVIAGL 175

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           +  G++D A     + G+R       + ++ T+I G    GR+ EAR LF+ +PV     
Sbjct: 176 VGVGKVDLAEEFFKEMGTRD------IASWTTMISGLASAGRIVEARGLFEDMPV----- 224

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
                  R++ +WN+MI  Y + G +     +F++M +RD  SWN MI+G +    +++A
Sbjct: 225 -------RDVRAWNTMIAGYIENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQDA 277

Query: 253 SNLFVKMPH-------------------------------PDTLTWNAMVSGYAQIGNLE 281
             LFV+MP                                 DT++W  ++ GY + G ++
Sbjct: 278 MRLFVEMPQKCRRSWNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEVD 337

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A+  F+ MP ++  +WN +I G   N   E  +K F++M+  G  PD  TF+S+L++ S
Sbjct: 338 TAVSIFELMPARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTICS 397

Query: 342 GIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +  LHLG QIH  VTKT     V ++NA++T+YARCG    A ++F  M+   + +SWN
Sbjct: 398 DLPTLHLGRQIHAQVTKTGFNYFVAVSNAMVTLYARCGNSNSALLLFSAMR-SHDFISWN 456

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           ++I G A +G   EA+E+F+ MRS  + P +ITF+ VLSAC+HAGLV++G+ +F  M  +
Sbjct: 457 SIICGLAHNGNGVEAIEVFEKMRSIDIKPNHITFVGVLSACSHAGLVDQGKYYFDFMKYK 516

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP---FEPDKAVWGALLGACRVHNNVEL 517
             +EP IEH+  +VD++GR G +++AM  ++ M     E   +VWGA+LGACR+H N+++
Sbjct: 517 CCLEPTIEHYTCIVDLLGRFGLIDEAMSFLRQMEANGVEVPASVWGAVLGACRIHKNMQV 576

Query: 518 AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFSP 577
            ++A E ++++EP NS  Y++L  MY   G+ +DA  V + M+   +KK    SW++ + 
Sbjct: 577 GEIAGERILEIEPHNSGVYIILAEMYLSSGKREDAERVWVRMREKGVKKQPACSWMEVNG 636

Query: 578 CG 579
            G
Sbjct: 637 SG 638



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 153/507 (30%), Positives = 244/507 (48%), Gaps = 31/507 (6%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N+ IS   + G  EEA  LF+ MP RN V++NAMI G+ QNG     +  FD MP RD  
Sbjct: 45  NSRISDCMRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMPERDIF 104

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S + +++GL++ G+++ A+ +  K   R     D+V ++N++I GY   G + EA ++F 
Sbjct: 105 SYNTMIAGLMKFGDINGASEIFQKMPFR-----DVV-SWNSMISGYVSNGLIGEALRVFS 158

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
            + +            +++VSWN +I      G V  A E F++M  RD  SW TMISG 
Sbjct: 159 GMVL------------KDVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGL 206

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                + EA  LF  MP  D   WN M++GY + G +E+    F++MPQ++  SWN MI 
Sbjct: 207 ASAGRIVEARGLFEDMPVRDVRAWNTMIAGYIENGCIEIGEVLFQKMPQRDFRSWNEMIN 266

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363
           G   N+  + A++LF++M     +  R +++SI+    G++   L  + H  + K+   D
Sbjct: 267 GLVRNQRIQDAMRLFVEM----PQKCRRSWNSIV---FGLIRNGLIKEAHAFLEKSPFSD 319

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
                 LI  Y   G +  A  IFE M   ++  +WN +I G   +    E L+ F  M+
Sbjct: 320 TVSWTNLIVGYFETGEVDTAVSIFELMP-ARDATAWNVIIWGLGENDHGEEGLKFFVKMK 378

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
                P   TF SVL+ C+    +  GRQ   + V + G    +    ++V +  R G  
Sbjct: 379 EGGPFPDEATFTSVLTICSDLPTLHLGRQ-IHAQVTKTGFNYFVAVSNAMVTLYARCGNS 437

Query: 484 EDAMDLIKGMPFEPDKAVWGALL-GACRVHNNVELAQVAAEAL-MKVEPENSTPYVLLYN 541
             A+ L   M    D   W +++ G     N VE  +V  +   + ++P N   +V + +
Sbjct: 438 NSALLLFSAMR-SHDFISWNSIICGLAHNGNGVEAIEVFEKMRSIDIKP-NHITFVGVLS 495

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPT 568
             +  G  D        MK     +PT
Sbjct: 496 ACSHAGLVDQGKYYFDFMKYKCCLEPT 522



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 155/310 (50%), Gaps = 26/310 (8%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           N+   NS I    + G    A+ +F++M +R+T ++N MI GY       E  +LF +MP
Sbjct: 40  NLKPLNSRISDCMRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMP 99

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             D  ++N M++G  + G++  A + F++MP +++VSWNSMI+G  +N     A+++F  
Sbjct: 100 ERDIFSYNTMIAGLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSG 159

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ-IHQMVTKTVIPDVPINNALITMYARCGA 379
           M ++    D  +++ +++   G+  + L  +   +M T+    D+     +I+  A  G 
Sbjct: 160 MVLK----DVVSWNLVIAGLVGVGKVDLAEEFFKEMGTR----DIASWTTMISGLASAGR 211

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM--RSFKVLPTYITFISV 437
           IVEAR +FE+M  +++V +WN MI G   +G       LF+ M  R F+     I     
Sbjct: 212 IVEARGLFEDMP-VRDVRAWNTMIAGYIENGCIEIGEVLFQKMPQRDFRSWNEMIN---- 266

Query: 438 LSACAHAGLVEEGR-QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
                  GLV   R Q    +  E   + R   + S+V  + R+G +++A   ++  PF 
Sbjct: 267 -------GLVRNQRIQDAMRLFVEMPQKCR-RSWNSIVFGLIRNGLIKEAHAFLEKSPFS 318

Query: 497 PDKAVWGALL 506
            D   W  L+
Sbjct: 319 -DTVSWTNLI 327


>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
 gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
          Length = 603

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/588 (36%), Positives = 346/588 (58%), Gaps = 46/588 (7%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           AR++FDEM +R+V +WN MISG + +   G L +AR +FD MP R+ V+W  +++GYA+ 
Sbjct: 12  ARRVFDEMSERNVFTWNCMISGLVRN---GMLTDARGVFDTMPFRNSVSWAALLTGYARC 68

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI 133
           G + EA  LF+ MP R+VVSWNAMISG+L NG V  A + FD MP R+  S   ++SG +
Sbjct: 69  GRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPARNDVSWLMMISGYM 128

Query: 134 QNGELDEAARVLVK--------CGSRCDG---------GEDL--------VRAYNTLIVG 168
           +   + EA  +  +        C +   G          EDL        + ++N +I G
Sbjct: 129 KRKRVREAREIFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQTPDLVSWNAMITG 188

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y + G ++ A++LFD++P            +++ VSW +++  Y + GDV +A ++F+ M
Sbjct: 189 YTRAGMMQVAQRLFDEMP------------EKDTVSWTAIVRGYLQNGDVDAAWKVFQDM 236

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
            +RD  +WNTM+SG++    +++A  LF  MP  D ++WN ++ GY Q G+++ A  +F+
Sbjct: 237 PDRDVLAWNTMMSGFVVSERLDDALRLFADMPDRDLVSWNTILQGYVQQGDMDGATAWFR 296

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
           +MP+K+  SWN++I+G    KD EGA+ L  +M   G +PD+ T+S  +S+ S +  L  
Sbjct: 297 KMPEKDEASWNTLISG---YKD-EGALNLLSEMTQGGYRPDQATWSVAISICSSLAALGC 352

Query: 349 GMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G  +H    KT    D  + ++LI+MY++CG I EA  +F+ + + ++ V+WNAMI   A
Sbjct: 353 GRMVHVCTIKTGFERDALVMSSLISMYSKCGLITEASQVFD-LIVQRDTVTWNAMIATYA 411

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
            HG A EAL LF  M      P + TF+SVLSACAH G + EG  HF+SM  ++ + PR 
Sbjct: 412 YHGLAAEALTLFDRMTKDGFSPDHATFLSVLSACAHKGYLYEGCHHFRSMQQDWNLIPRS 471

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
           +H++ +VD++GR G +  A +  + +P +     W  L  +C  H +++L ++ A+ +++
Sbjct: 472 DHYSCMVDLLGRSGFVHQAYNFTRRIPSDLQINAWETLFSSCNAHGDIQLGELVAKNVLQ 531

Query: 528 VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
             P +   Y LL N+YA  G W  A  VR LMK   +KK TG SW++ 
Sbjct: 532 SRPSDGGMYTLLSNIYAAKGMWSSAASVRGLMKEQGLKKETGCSWIEL 579



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 166/339 (48%), Gaps = 23/339 (6%)

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA 269
           M + +AG V +AR +F++M ER+ F+WN MISG +    + +A  +F  MP  ++++W A
Sbjct: 1   MAHFRAGRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAA 60

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +++GYA+ G +  A + F RMP +++VSWN+MI+G   N   + A  LF  M      P 
Sbjct: 61  LLTGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVM------PA 114

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEE 389
           R+  S ++ M SG +      +  ++  +   P   + NAL++ YA  G + +A  +F  
Sbjct: 115 RNDVSWLM-MISGYMKRKRVREAREIFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGR 173

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           M+   ++VSWNAMI G    G    A  LF  M         +++ +++      G V+ 
Sbjct: 174 MQ-TPDLVSWNAMITGYTRAGMMQVAQRLFDEMPE----KDTVSWTAIVRGYLQNGDVDA 228

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
             + F+ M +       +  + +++       RL+DA+ L   MP + D   W  +L   
Sbjct: 229 AWKVFQDMPDR-----DVLAWNTMMSGFVVSERLDDALRLFADMP-DRDLVSWNTILQGY 282

Query: 510 RVHNNVELAQVAAEALMKVEPE-NSTPYVLLYNMYADVG 547
               +++     A A  +  PE +   +  L + Y D G
Sbjct: 283 VQQGDMD----GATAWFRKMPEKDEASWNTLISGYKDEG 317


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/560 (40%), Positives = 328/560 (58%), Gaps = 57/560 (10%)

Query: 16  KLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGE 75
           KLF     +DV ++NV I     +   G +  AR LFD MP RD V+WN++I+GY K G 
Sbjct: 40  KLFS---TQDVYAFNVQIGNLARA---GNIGAARQLFDEMPHRDTVSWNSIITGYWKNGC 93

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN 135
            +E+ RLF  MP +NVVSWN+MI+G +++  +  A ++F  MP R++AS +A++SGL++ 
Sbjct: 94  FDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVR- 152

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
                                     Y+          RVEEA +LF+++P         
Sbjct: 153 --------------------------YD----------RVEEASRLFEEMP--------- 167

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
              +RN++S+ +M+  YAK G++  AR +F  M +++  SW  MISGY+     +EA NL
Sbjct: 168 ---RRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENL 224

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           F +MP  + +   AM++GY + G  + A   F ++P ++L SWN+MI G   N   E A+
Sbjct: 225 FEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEAL 284

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMY 374
           KL  QM   G +PD  T  S+L+  S +  L  G + H +V K+     + I NALITMY
Sbjct: 285 KLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMY 344

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
            +CG+I+++ + F ++    +VVSWNAMI   A HGF   AL  F  MRS +V P  ITF
Sbjct: 345 CKCGSILDSELAFRQIDH-PDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITF 403

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           +S+LSAC HAG V E    F SM+  Y I PR EHFA LVDI+ R G++E A  +I+ MP
Sbjct: 404 LSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMP 463

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANE 554
           FE D  +WGALL AC VH NV+L ++AA+ ++++EP+NS  YV+L N+YA  G W +   
Sbjct: 464 FEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTR 523

Query: 555 VRLLMKSNNIKKPTGYSWVD 574
           VR LM+   +KK   YSW++
Sbjct: 524 VRGLMREQGVKKQPAYSWME 543



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 136/449 (30%), Positives = 221/449 (49%), Gaps = 62/449 (13%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           I    +   +  AR+LFDEMP RD VSWN +I+GY     +G  +E++ LF +MP ++ V
Sbjct: 54  IGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWK---NGCFDESKRLFGLMPTKNVV 110

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           +WN++I+G  +   ++EA + F +MP RN  SWNAMISG ++   V  A   F+ MP R+
Sbjct: 111 SWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRN 170

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S +A+V G  + GE+ E AR L  C  + +     V ++  +I GY + G+ +EA  L
Sbjct: 171 VISYTAMVDGYAKIGEI-EQARALFNCMPQKN-----VVSWTVMISGYVENGKFDEAENL 224

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           F+++P             +NIV+  +MI  Y K G    A+ +F+Q+  RD  SWN MI+
Sbjct: 225 FEQMP------------DKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMIT 272

Query: 242 GYIHVLDMEEASNLFVKM------PHPDTL------------------------------ 265
           GY      EEA  L  +M      P   TL                              
Sbjct: 273 GYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYES 332

Query: 266 ---TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
                NA+++ Y + G++  +   F+++   ++VSWN+MIA    +  Y+ A+  F +M+
Sbjct: 333 RISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMR 392

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQ-IHQMV-TKTVIPDVPINNALITMYARCGAI 380
               +PD  TF S+LS       +H  +   + M+ +  ++P       L+ + +R G +
Sbjct: 393 SNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQV 452

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            +A  I +EM    +   W A++  C  H
Sbjct: 453 EKAYKIIQEMPFEADCGIWGALLAACHVH 481



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 200/418 (47%), Gaps = 56/418 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+G ++   + +A + F  MPQR+  SWN MISG +       +EEA  LF+ MP R+ 
Sbjct: 115 MIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDR---VEEASRLFEEMPRRNV 171

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           +++  ++ GYAK GE+E+A  LFN MP +NVVSW  MISG+++NG    A   F++MP +
Sbjct: 172 ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDK 231

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  +++A+++G  + G+ D+A  +  +   R     DL  ++N +I GY Q G  EEA K
Sbjct: 232 NIVAMTAMITGYCKEGKTDKAKILFDQIPCR-----DLA-SWNAMITGYAQNGSGEEALK 285

Query: 181 LFD---KIPVNCDRG----------------EGNVR--------FKRNIVSWNSMIMCYA 213
           L     K+ +  D                  EG           ++  I   N++I  Y 
Sbjct: 286 LHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYC 345

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNA 269
           K G ++ +   F Q+   D  SWN MI+ +      + A   F +M      PD +T+ +
Sbjct: 346 KCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLS 405

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLV-----SWNSMIAGCETNKDYEGAIKLFIQMQVE 324
           ++S     G +  +L++F  M +   +      +  ++         E A K+  +M  E
Sbjct: 406 LLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFE 465

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA----LITMYARCG 378
               D   + ++L+       +HL +++ ++  K ++   P N+     L  +YA  G
Sbjct: 466 A---DCGIWGALLAA----CHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAG 516


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/567 (38%), Positives = 323/567 (56%), Gaps = 57/567 (10%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--RDCVTWNTVIS 68
           ++ AR+LFD  P RDVVSW  +++ Y      G L +AR LFD  P+  R+ VTW  ++S
Sbjct: 51  VSDARRLFDRTPDRDVVSWTALVAAYARQ---GMLHDARALFD-RPDARRNVVTWTALLS 106

Query: 69  GYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSAL 128
           GYA+ G ++EA  LF  MP RNVVSWN M+  +   G V +A   FD MP RD+ S + L
Sbjct: 107 GYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWNIL 166

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
           ++ L+++G +                                     ++ARKLFD++P  
Sbjct: 167 LAALVRSGNM-------------------------------------DKARKLFDRMP-- 187

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                     +RN+++W +M+   A++G V  AR +F+ M ER+  SWN MISGY     
Sbjct: 188 ----------ERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAMISGYARNHR 237

Query: 249 MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           ++EA +LF+KMP  D  +WN M++G+ Q  +LE A D F +MP++N+++W +M+ G   +
Sbjct: 238 IDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQS 297

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPIN 367
              E A+++F  M VEG +P++ TF   +   S +  L  G Q+HQM+ KT    D  I 
Sbjct: 298 MQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIE 357

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           + L+ +YA+CG I  AR +F+  K  K+V+SWN MI   A HG   EA+ L++ M+    
Sbjct: 358 STLMNLYAKCGEIRLARKVFDLSKE-KDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGY 416

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
            P  +T++ +LSAC+H+GLV+EG + F+ MV +  I  R EH+  L+D+  R GRL DA 
Sbjct: 417 KPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAK 476

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
            LI  +  EP   VW ALLG C  H N  +  +AA  L++ EP N+  Y LL N+YA  G
Sbjct: 477 RLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAG 536

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +W +A ++R  M    +KK  G SW++
Sbjct: 537 KWKEAAKIRSEMNDRGLKKQPGCSWIE 563



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 247/477 (51%), Gaps = 35/477 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++SGY +   + +A  LF  MP+R+VVSWN M+  Y S   +G + +A  LFD MP RD 
Sbjct: 104 LLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTS---AGRVRDAWTLFDGMPVRDA 160

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN +++   ++G M++A +LF+ MP RNV++W  M++G  ++G V  A   FD MP R
Sbjct: 161 GSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPER 220

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++SG  +N  +DEA  + +K  +R       + ++N +I G+ Q   +E A+ 
Sbjct: 221 NVVSWNAMISGYARNHRIDEAHDLFMKMPTRD------IASWNIMITGFIQDRDLERAQD 274

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFDK+P            +RN+++W +M+  Y ++    +A +IF  ML           
Sbjct: 275 LFDKMP------------RRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTF 322

Query: 241 SGYIHVL-------DMEEASNLFVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
            G +          + ++   +  K     DT   + +++ YA+ G + LA   F    +
Sbjct: 323 LGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKE 382

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM--SSGIVDLHLGM 350
           K+++SWN MIA    +     AI L+ +MQ +G KP+  T+  +LS    SG+VD  L +
Sbjct: 383 KDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRI 442

Query: 351 QIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
             + +  +++         LI + +R G + +A+ +   +K+  +   WNA++GGC SHG
Sbjct: 443 FEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHG 502

Query: 411 FATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
              E++    +    +  P    T+  + +  A AG  +E  +  +S +N+ G++ +
Sbjct: 503 --NESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAK-IRSEMNDRGLKKQ 556


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/569 (37%), Positives = 325/569 (57%), Gaps = 57/569 (10%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--RDCVTWNTVIS 68
           ++ AR+LFD  P RDVVSW  +++ Y      G L +AR LFD  P+  R+ VTW  ++S
Sbjct: 51  VSDARRLFDRTPDRDVVSWTALVAAYACQ---GMLHDARALFD-RPDARRNVVTWTALLS 106

Query: 69  GYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSAL 128
           GYA+ G ++EA  LF  MP RNVVSWN M+  +  +G V +A   F+ MP RD+ S + L
Sbjct: 107 GYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWNIL 166

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
           ++ L+++G                                      +++ARKLFD++P  
Sbjct: 167 LAALVRSGN-------------------------------------IDKARKLFDRMP-- 187

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                     +RN+++W +M+   A++G V  AR +F+ M ER+  SWN MISGY     
Sbjct: 188 ----------ERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVVSWNAMISGYARNHM 237

Query: 249 MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           ++EA +LF+KMP  D  +WN M++G+ Q  NLE A + F +MP++N+V+W +M+ G   +
Sbjct: 238 IDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQS 297

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPIN 367
              E A++LF  M ++G +P++ TF   +   S +  L  G Q+HQM+ KT    D  I 
Sbjct: 298 IQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIE 357

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           + L+ +YA+CG I+ AR +F   K  K+V+SWN MI   A HG   EA+ L++ M+    
Sbjct: 358 STLMNLYAKCGEIILARKVFNLSKE-KDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGY 416

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
            P  +T++ +LSAC+H+GLV+EG + F+ MV +  I  R EH+  L+D+  R GRL DA 
Sbjct: 417 KPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAK 476

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
            LI  +  EP   VW ALLG C  H N  +  +AA  L++ EP N+  Y LL N+YA  G
Sbjct: 477 RLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAG 536

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           +W +A ++R  M    +KK  G SW++ +
Sbjct: 537 KWKEAAKIRSEMNDRGLKKQPGCSWIEVA 565



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 140/478 (29%), Positives = 251/478 (52%), Gaps = 37/478 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++SGY +   + +A  LF  MP+R+VVSWN M+  Y S   SG + +A  LF+ MP RD 
Sbjct: 104 LLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTS---SGRVGDACTLFNGMPVRDA 160

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN +++   ++G +++A +LF+ MP RNV++W  M++G  ++G V  A   FD MP R
Sbjct: 161 GSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPER 220

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++SG  +N  +DEA  + +K  +R       + ++N +I G+ Q   +E A++
Sbjct: 221 NVVSWNAMISGYARNHMIDEAHDLFMKMPTRD------IASWNIMITGFIQNKNLERAQE 274

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFDK+P            +RN+V+W +M+  Y ++    +A ++F  ML  D    N + 
Sbjct: 275 LFDKMP------------RRNVVTWTTMMNGYLQSIQSETALQLFNGMLI-DGIRPNQVT 321

Query: 241 --------SGYIHVLDMEEASNLFVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMP 291
                   S    + + ++   +  K P   DT   + +++ YA+ G + LA   F    
Sbjct: 322 FLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSK 381

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM--SSGIVDLHLG 349
           +K+++SWN MIA    +     AI L+ +MQ  G KP+  T+  +LS    SG+VD  L 
Sbjct: 382 EKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLR 441

Query: 350 MQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           +  + +  +++         LI + +R G + +A+ +   +K+  +   WNA++GGC SH
Sbjct: 442 IFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSH 501

Query: 410 GFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
           G   E++    +    +  P    T+  + +  A AG  +E  +  +S +N+ G++ +
Sbjct: 502 G--NESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAK-IRSEMNDRGLKKQ 556


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/558 (38%), Positives = 333/558 (59%), Gaps = 56/558 (10%)

Query: 21  MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE-RDCVTWNTVISGYAKTGEMEEA 79
           M +RDVV+W  +ISGYI     G + +AR LFD +   +D VTW  ++SGY +   +EEA
Sbjct: 1   MHERDVVTWTAVISGYIKC---GLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEA 57

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELD 139
            RLF  MP +NVVSWN MI G+ +N +V  AIE F+RM  R+  S +A+++ L+Q     
Sbjct: 58  ERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQ----- 112

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
                       C                    GRVEEAR+ FD++P            K
Sbjct: 113 ------------C--------------------GRVEEARRRFDEMP------------K 128

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
           R+++SW +M+M  A++G V  AR++F++M ER+  SWN M++GY   + ++EA +LF +M
Sbjct: 129 RDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERM 188

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
           P  +  +WN M++G+ Q G L  A   F  MP+KN+VSW +MI G     + E A+K+F+
Sbjct: 189 PERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFV 248

Query: 320 QMQVEG-EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARC 377
           +M  +G  +P+  TF ++L   S +  L  G Q+H +++K+V  D   + +AL+ MY++C
Sbjct: 249 EMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKC 308

Query: 378 GAIVEARIIFEEMKL-LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           G +  AR IF+++ +  +++V WN MI   A HG   EA+ELF+ M+     P  ++++ 
Sbjct: 309 GELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVE 368

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           +LSAC+HAGLV+EG  +F  +  +  I+ R +H A LVD+ GR GRL++A D IK +  +
Sbjct: 369 LLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTK 428

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
              ++WG LL  C  H ++E+ Q+AA+ L K +PEN+  Y+LL N+YA   +W +A+ VR
Sbjct: 429 ASSSIWGGLLAGCNAHGDLEIGQLAAKELEKEDPENAGTYLLLSNIYASGRKWREASRVR 488

Query: 557 LLMKSNNIKKPTGYSWVD 574
           L MK   +KK  G SW++
Sbjct: 489 LKMKEKGLKKQPGCSWIE 506



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 142/455 (31%), Positives = 233/455 (51%), Gaps = 66/455 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQ-RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           +ISGY+K   +  AR+LFD +   +DVV+W  M+SGY+  +    +EEA  LF++MP ++
Sbjct: 12  VISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKR---IEEAERLFEVMPVKN 68

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            V+WNT+I GY K  E+++A+ +F  M  RN+VSWNA+I+  +Q G V  A   FD MP 
Sbjct: 69  VVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEARRRFDEMPK 128

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           RD  S + +V GL ++G +DEA +V  +   R       V ++N ++ GY +  R++EA 
Sbjct: 129 RDVISWTTMVMGLARSGRVDEARKVFDRMPERN------VVSWNAMVTGYAKNMRLDEAF 182

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            LF+++P            +RN+ SWN+MI  + + G++  AR++F +M E++  SW TM
Sbjct: 183 DLFERMP------------ERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTM 230

Query: 240 ISGYIHVLDMEEASNLFVKM-----PHPD------------------------------- 263
           I+GY+   + E A  +FV+M       P+                               
Sbjct: 231 ITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSV 290

Query: 264 ----TLTWNAMVSGYAQIGNLELALDFFKR--MPQKNLVSWNSMIAGCETNKDYEGAIKL 317
               T   +A+++ Y++ G L +A   F    + Q++LV WN MIA    +     AI+L
Sbjct: 291 YQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIEL 350

Query: 318 FIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYA 375
           F  MQ  G KP+  ++  +LS  S  G+VD  L          ++      +  L+ +  
Sbjct: 351 FEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHACLVDLCG 410

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           R G + EA    +++    +   W  ++ GC +HG
Sbjct: 411 RAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHG 445


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/566 (37%), Positives = 341/566 (60%), Gaps = 23/566 (4%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++ +ARK FD +  + + SWN ++SGY ++   G   EAR +FD MPER+ V+WN ++SG
Sbjct: 32  QINEARKFFDSLRYKAIGSWNSIVSGYFAN---GLPREARQMFDEMPERNIVSWNGLVSG 88

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           Y K   +EEA  +F  MP RNVVSW AM+ G++Q G V  A   F RMP R+  S + + 
Sbjct: 89  YIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMF 148

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
            GLI  G +D+A ++          G+D+V + N +I G  + GRV+EAR++FD++    
Sbjct: 149 GGLIDGGRIDDARKLY-----DMMPGKDVVASTN-MIGGLCREGRVDEAREIFDEMR--- 199

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
                    +RN+++W +MI  Y +   V  AR++FE M E+   SW +M+ GY     +
Sbjct: 200 ---------ERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRI 250

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           E+A   F  MP    +  NAM+    ++G +  A   F +M  ++  +W  MI   E   
Sbjct: 251 EDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKG 310

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINN 368
               A++LF QMQ +G +P   +  SILS+ + +  L  G Q+H  + +     DV + +
Sbjct: 311 FELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVAS 370

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
            L+TMY +CG +V+A+++F+     K+++ WN++I G ASHG   EAL++F  M     +
Sbjct: 371 VLMTMYVKCGELVKAKLVFDRFPS-KDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTM 429

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P  +T I++L+AC++ G +EEG + F+SM +++ + P +EH++  VD++GR G+++ AM+
Sbjct: 430 PNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAME 489

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           LI  M  +PD  VWGALLGAC+ H+ ++LA+VAA+ L ++EPEN+ PY+LL ++ A   +
Sbjct: 490 LINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILLSSINASRSK 549

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVD 574
           W D  E+R  M++ N+ K  G SW++
Sbjct: 550 WGDVAEMRKNMRTKNVSKFPGCSWIE 575



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 149/299 (49%), Gaps = 24/299 (8%)

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           ++ G +  AR+ F+ +  +   SWN+++SGY       EA  +F +MP  + ++WN +VS
Sbjct: 28  SRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVS 87

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
           GY +   +E A + F+ MP++N+VSW +M+ G         A  LF +M      P+R+ 
Sbjct: 88  GYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRM------PERNE 141

Query: 333 FSSILSMSSGIVD---LHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEE 389
            S  + M  G++D   +    +++ M+      DV  +  +I    R G + EAR IF+E
Sbjct: 142 VSWTV-MFGGLIDGGRIDDARKLYDMMPGK---DVVASTNMIGGLCREGRVDEAREIFDE 197

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           M+  +NV++W  MI G   +     A +LF+ M       T +++ S+L     +G +E+
Sbjct: 198 MR-ERNVITWTTMITGYGQNKRVDVARKLFEVMPE----KTEVSWTSMLLGYTLSGRIED 252

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
             + F+ M     ++P I   A +V + G  G +  A  +   M  + D A W  ++ A
Sbjct: 253 AEEFFEVM----PMKPVIACNAMIVAL-GEVGEIVKARRVFDQME-DRDNATWRGMIKA 305


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/561 (39%), Positives = 332/561 (59%), Gaps = 61/561 (10%)

Query: 21  MPQRD-VVSWNVMISGYISSRGS--GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEME 77
           +P++D  V  NV    ++ +  S  G + EAR LFD M E D +TW TVISGY K G +E
Sbjct: 56  IPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIE 115

Query: 78  EALRLFNSMPAR-NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG 136
           EA RLF+ + A+ NVV+W AM+ G++++  +++A + F+ MP ++               
Sbjct: 116 EARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKN--------------- 160

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
                                 V ++NT+I GY Q GR++ A  LF+K+P          
Sbjct: 161 ----------------------VVSWNTMIDGYAQNGRIDSAMYLFEKMP---------- 188

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF 256
             +RN+VSWN+++   A+ G +  AR +F++M ERD  SW  MI+G      ++EA +LF
Sbjct: 189 --ERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGL-----LDEALDLF 241

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
            +MP  D  +WN M++G  Q G+L  A   F  MP+KN++SW +MI GC    + E A+K
Sbjct: 242 ERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALK 301

Query: 317 LFIQM-QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMY 374
           +F +M    G KP++ TF S+L   S +  L  G Q+HQ+++KTV  D   + +ALI MY
Sbjct: 302 IFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMY 361

Query: 375 ARCGAIVEARIIFEE-MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           ++CG +  AR +F++ M   +++VSWN +I   A HG+  EA+  FK MR     P  +T
Sbjct: 362 SKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVT 421

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           ++ +LSAC+HAGLVEEG ++F  +V +  I  R +H+A LVD+ GR GRL++A   I+ +
Sbjct: 422 YVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERL 481

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
             +P   VWGALL  C VH NV++ + AA+ L++VEPEN+  Y+LL N+YA  G+W +A 
Sbjct: 482 ETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAA 541

Query: 554 EVRLLMKSNNIKKPTGYSWVD 574
            VRL MK   +KK  G SW++
Sbjct: 542 RVRLKMKDKGLKKQPGCSWIE 562


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/561 (39%), Positives = 327/561 (58%), Gaps = 57/561 (10%)

Query: 16  KLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGE 75
           KLF     +DV ++NV I     +   G +  AR +FD MP RD V+WN++I+GY K G 
Sbjct: 40  KLFS---TQDVYAFNVQIGNLARA---GNIGAARQVFDEMPHRDTVSWNSIITGYWKNGC 93

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN 135
            +E+ RLF  MP +NVVSWN+MI+G +++  +  A ++F  MP R++AS +A++SGL++ 
Sbjct: 94  FDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVR- 152

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
                                     Y+          RVEEA +LF+++P         
Sbjct: 153 --------------------------YD----------RVEEASRLFEEMP--------- 167

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
              +RN++S+ +M+  YAK G++  AR +F  M +++  SW  MISGY+     +EA NL
Sbjct: 168 ---RRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENL 224

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           F +MP  + +   AM++GY + G  + A   F ++P ++L SWN+MI G   N   E A+
Sbjct: 225 FEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEAL 284

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMY 374
           KL  QM   G +PD  T  S+L+  S +  L  G + H +V K+     + I NALITMY
Sbjct: 285 KLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMY 344

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
            +CG+I+++ + F ++    +VVSWNAMI   A HGF   AL  F  MRS +V P  ITF
Sbjct: 345 CKCGSILDSELAFRQIDH-PDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITF 403

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           +S+LSAC HAG V E    F SM+  Y I  R EHFA LVDI+ R G++E A  +I+ MP
Sbjct: 404 LSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMP 463

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANE 554
           FE D  +WGALL AC VH NV+L ++AA+ ++++EP+NS  YV+L N+YA  G W +   
Sbjct: 464 FEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTR 523

Query: 555 VRLLMKSNNIKKPTGYSWVDF 575
           VR LM+   +KK   YSW++ 
Sbjct: 524 VRGLMREQGVKKQPAYSWMEI 544



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 139/440 (31%), Positives = 220/440 (50%), Gaps = 68/440 (15%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           AR++FDEMP RD VSWN +I+GY     +G  +E++ LF +MP ++ V+WN++I+G  + 
Sbjct: 66  ARQVFDEMPHRDTVSWNSIITGYWK---NGCFDESKRLFGLMPTKNVVSWNSMIAGCIED 122

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI 133
             ++EA + F +MP RN  SWNAMISG ++   V  A   F+ MP R+  S +A+V G  
Sbjct: 123 ERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYA 182

Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
           + GE+ E AR L  C  + +     V ++  +I GY + G+ +EA  LF+++P       
Sbjct: 183 KIGEI-EQARALFNCMPQKN-----VVSWTVMISGYVENGKFDEAENLFEQMP------- 229

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEAS 253
                 +NIV+  +MI  Y K G    A+ +F+Q+  RD  SWN MI+GY      EEA 
Sbjct: 230 -----DKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEAL 284

Query: 254 NLFVKMP----HPDTLTW-----------------------------------NAMVSGY 274
            L  +M      PD  T                                    NA+++ Y
Sbjct: 285 KLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMY 344

Query: 275 AQIGNL---ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
            + G++   ELA   F+++   ++VSWN+MIA    +  Y+ A+  F +M+    +PD  
Sbjct: 345 CKCGSILDSELA---FRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGI 401

Query: 332 TFSSILSMSSGIVDLHLGMQ-IHQMVTKTVIPDVPINNA-LITMYARCGAIVEARIIFEE 389
           TF S+LS       +H  +   + M+    I   P + A L+ + +R G + +A  I +E
Sbjct: 402 TFLSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQE 461

Query: 390 MKLLKNVVSWNAMIGGCASH 409
           M    +   W A++  C  H
Sbjct: 462 MPFEADCGIWGALLAACHVH 481



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 198/418 (47%), Gaps = 56/418 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+G ++   + +A + F  MPQR+  SWN MISG +       +EEA  LF+ MP R+ 
Sbjct: 115 MIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVR---YDRVEEASRLFEEMPRRNV 171

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           +++  ++ GYAK GE+E+A  LFN MP +NVVSW  MISG+++NG    A   F++MP +
Sbjct: 172 ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDK 231

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  +++A+++G  + G+ D+A  +  +   R     DL  ++N +I GY Q G  EEA K
Sbjct: 232 NIVAMTAMITGYCKEGKTDKAKILFDQIPCR-----DLA-SWNAMITGYAQNGSGEEALK 285

Query: 181 LFD---KIPVNCDRG----------------EGNVR--------FKRNIVSWNSMIMCYA 213
           L     K+ +  D                  EG           ++  I   N++I  Y 
Sbjct: 286 LHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYC 345

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNA 269
           K G ++ +   F Q+   D  SWN MI+ +      + A   F +M      PD +T+ +
Sbjct: 346 KCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLS 405

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN-----KDYEGAIKLFIQMQVE 324
           ++S     G +  +L++F  M     +        C  +        E A K+  +M  E
Sbjct: 406 LLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFE 465

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA----LITMYARCG 378
               D   + ++L+       +HL +++ ++  K ++   P N+     L  +YA  G
Sbjct: 466 A---DCGIWGALLAA----CHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAG 516


>gi|413935435|gb|AFW69986.1| hypothetical protein ZEAMMB73_442164 [Zea mays]
          Length = 658

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/601 (36%), Positives = 345/601 (57%), Gaps = 47/601 (7%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           I  + +   +  AR++FDEM +R+V +WN M+SG      +G L +AR +FD MP R+ V
Sbjct: 43  IMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLAR---NGLLADARGVFDAMPSRNSV 99

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           +W  +++GYA+ G + EA  LF+ MP RNVVSWNAM+SG+L+NG V  A E FD MP RD
Sbjct: 100 SWAALLTGYARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARELFDAMPARD 159

Query: 122 SASLSALVSGLIQNGELDEAARVLVK---------CGSRCDG---------GEDLVR--- 160
             S   +VSG ++     EA  +  +         C +   G          E+L     
Sbjct: 160 DVSWLMMVSGYMRRKRFREAREIFDRAPSPPPTSVCNALLSGYAGYGYLKDAEELFGRMQ 219

Query: 161 -----AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
                ++N +I GY + G ++ AR+LFD++P             ++ VSW +++  Y + 
Sbjct: 220 RPDRVSWNAMITGYTRAGMMQVARRLFDEMP------------GKDTVSWTAIVRGYLQN 267

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
           GDV +A E+F+ M +RD  +WNTM+ G++    +++A  LF  MP  D ++WN ++ GY 
Sbjct: 268 GDVDAAWEVFQDMPDRDVLAWNTMMGGFVVSDRLDDALRLFADMPDRDLVSWNTILQGYI 327

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           Q G+++ A  +F+ M +K+  SWN++I+G    KD EGA+ L  +M   G +PD+ T+S 
Sbjct: 328 QQGDMDSATTWFRSMLEKDETSWNTVISG---YKD-EGALSLLSEMTRGGYRPDQATWSV 383

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           ++S+ + +  L  G  +H    KT    D  + ++LI+MY++CG I EA  +F ++ + +
Sbjct: 384 VISVCASLAALGCGRMVHICTIKTGFEHDALVMSSLISMYSKCGLITEASQVF-DLIVQR 442

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           + V+WNAMI   A HG A EAL LF  M   +  P + TF+SVLSACAH G + EG  +F
Sbjct: 443 DTVTWNAMIATYAYHGLAAEALALFDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYF 502

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           +SM  ++ + PR +H++ +VD++GR G +  A +  + +P       W  L  +C  H +
Sbjct: 503 RSMQQDWNLVPRSDHYSCMVDLLGRSGFVHQAYNFTRKIPSNLQINAWETLFSSCNAHGD 562

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           ++L ++ A+ +++  P +   Y LL N+YA  G W  A  VR LMK   +KK TG SW++
Sbjct: 563 IQLGELVAKNVLQSRPSDGGMYTLLSNIYAAKGMWSSAATVRGLMKEQGLKKETGCSWIE 622

Query: 575 F 575
            
Sbjct: 623 L 623



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 139/474 (29%), Positives = 211/474 (44%), Gaps = 78/474 (16%)

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
           A +V  WN+ I    + G V  A   FD M  R+  + + +VSGL +NG L +A  V   
Sbjct: 33  AGDVGRWNSDIMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLARNGLLADARGVFDA 92

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
             SR         ++  L+ GY +RGRV EAR LFD++P             RN+VSWN+
Sbjct: 93  MPSRNS------VSWAALLTGYARRGRVAEARDLFDRMP------------HRNVVSWNA 134

Query: 208 MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH---------VLD---------- 248
           M+  Y + G V  ARE+F+ M  RD  SW  M+SGY+          + D          
Sbjct: 135 MVSGYLRNGMVDRARELFDAMPARDDVSWLMMVSGYMRRKRFREAREIFDRAPSPPPTSV 194

Query: 249 -------------MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
                        +++A  LF +M  PD ++WNAM++GY + G +++A   F  MP K+ 
Sbjct: 195 CNALLSGYAGYGYLKDAEELFGRMQRPDRVSWNAMITGYTRAGMMQVARRLFDEMPGKDT 254

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           VSW +++ G   N D + A ++F  M      PDR   +    M   +V   L   + ++
Sbjct: 255 VSWTAIVRGYLQNGDVDAAWEVFQDM------PDRDVLAWNTMMGGFVVSDRLDDAL-RL 307

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
                  D+   N ++  Y + G +  A   F  M L K+  SWN +I G    G    A
Sbjct: 308 FADMPDRDLVSWNTILQGYIQQGDMDSATTWFRSM-LEKDETSWNTVISGYKDEG----A 362

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH----FA 471
           L L   M      P   T+  V+S CA    +  GR     MV+   I+   EH     +
Sbjct: 363 LSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGR-----MVHICTIKTGFEHDALVMS 417

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
           SL+ +  + G + +A  +   +  + D   W A++     H       +AAEAL
Sbjct: 418 SLISMYSKCGLITEASQVFD-LIVQRDTVTWNAMIATYAYHG------LAAEAL 464



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 173/352 (49%), Gaps = 22/352 (6%)

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF 256
           R   ++  WNS IM + +AG V +AR +F++M ER+ F+WN M+SG      + +A  +F
Sbjct: 31  RHAGDVGRWNSDIMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLARNGLLADARGVF 90

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
             MP  ++++W A+++GYA+ G +  A D F RMP +N+VSWN+M++G   N   + A +
Sbjct: 91  DAMPSRNSVSWAALLTGYARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARE 150

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYA 375
           LF  M      P R   S ++ M SG +      +  ++  +    P   + NAL++ YA
Sbjct: 151 LFDAM------PARDDVSWLM-MVSGYMRRKRFREAREIFDRAPSPPPTSVCNALLSGYA 203

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
             G + +A  +F  M+   + VSWNAMI G    G    A  LF  M         +++ 
Sbjct: 204 GYGYLKDAEELFGRMQ-RPDRVSWNAMITGYTRAGMMQVARRLFDEMPGKDT----VSWT 258

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           +++      G V+   + F+ M +       +  + +++       RL+DA+ L   MP 
Sbjct: 259 AIVRGYLQNGDVDAAWEVFQDMPDR-----DVLAWNTMMGGFVVSDRLDDALRLFADMP- 312

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
           + D   W  +L       +++ A     ++++   ++ T +  + + Y D G
Sbjct: 313 DRDLVSWNTILQGYIQQGDMDSATTWFRSMLE---KDETSWNTVISGYKDEG 361


>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
          Length = 664

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/601 (35%), Positives = 358/601 (59%), Gaps = 55/601 (9%)

Query: 6   VKRREMAKARKLFDEMPQRDV----VSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           + ++ + +AR + DEMP R V    V W  ++S +     +GF++EAR LF+IMPER+ V
Sbjct: 52  LSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKF---SKNGFIDEARALFEIMPERNVV 108

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           T+N ++SGY + G + +A R F  MP RNVVSW +++ G    G +  A E F+ MP R+
Sbjct: 109 TYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERN 168

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S ++++ GLI++G+L+EA RV  +   +         ++N +I GY +  R+EEAR L
Sbjct: 169 VVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQ------VSWNVMIAGYAEHSRMEEARVL 222

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW----- 236
           FD        G G+    RN+V+W SMI  Y +AG+V     +F++M ER+  SW     
Sbjct: 223 FD--------GMGD----RNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIG 270

Query: 237 ----------------------NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
                                 N+MI+GYI +  +E+A +LF  +P  D ++W +M++GY
Sbjct: 271 GFAWNGFYKEALNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGY 330

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
             +G +  A   F  MP ++ V+W  M++G   N+ +  A  LF +M+V+G  P   TFS
Sbjct: 331 FNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFS 390

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLL 393
            +L  +  +  L  G Q H ++ KT    D+ + N+LI+MYA+CG I +A  IF +M + 
Sbjct: 391 ILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKM-IS 449

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           ++++SWN+MI G + HG  +EAL++F++M +    P  +TF+ +LSAC+HAGL+ +G + 
Sbjct: 450 RDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWEL 509

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
           F +M + + I+P++EH+  +V+++GR G++E+A + I  +PFEPD  +WGALLG C    
Sbjct: 510 FDAMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLGVCGFGM 569

Query: 514 -NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
            N  +A+ AA+ L++++P N+  +V+L N++A +G+  +  ++R  M    ++K  G SW
Sbjct: 570 INTGVARRAAKRLLELDPLNAPAHVVLCNIHASIGQRAEEGQLRKEMGLKGVRKVPGCSW 629

Query: 573 V 573
           +
Sbjct: 630 I 630



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/479 (29%), Positives = 223/479 (46%), Gaps = 97/479 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+SGYV+   ++ A + F+EMP+R+VVSW  ++ G  +   +G + EAR LF++MPER+ 
Sbjct: 113 MLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLAN---AGRIGEARELFNVMPERNV 169

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPA-------------------------------R 89
           V+WN+++ G  ++G++EEA R+FN MP                                R
Sbjct: 170 VSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDR 229

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
           NVV+W +MISG+ + G+V      F +MP R+  S +A++ G   NG   EA   +    
Sbjct: 230 NVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALNSMSYNT 289

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
             C          N++I GY + G++E+A+ LFD IPV            R+ +SW SMI
Sbjct: 290 QSC----------NSMINGYIRIGQLEKAQSLFDTIPV------------RDKISWTSMI 327

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF----VKMPHP--- 262
             Y   G +  A  +F  M +RD  +W  M+SG++      EA+ LF    VK   P   
Sbjct: 328 NGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNS 387

Query: 263 --------------------------------DTLTWNAMVSGYAQIGNLELALDFFKRM 290
                                           D +  N+++S YA+ G +  A   F +M
Sbjct: 388 TFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKM 447

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
             ++L+SWNSMI G   +     A+K+F  M   G  P+  TF  ILS  S    L+ G 
Sbjct: 448 ISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGW 507

Query: 351 QIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           ++   ++    + P +     ++ +  R G + EA     ++    ++  W A++G C 
Sbjct: 508 ELFDAMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLGVCG 566



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 129/457 (28%), Positives = 211/457 (46%), Gaps = 78/457 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS-SRGSGFLEEARYLFDIMPERD 59
           M+ G ++  ++ +AR++F+EMP +  VSWNVMI+GY   SR    +EEAR LFD M +R+
Sbjct: 175 MLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSR----MEEARVLFDGMGDRN 230

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN--------------- 104
            VTW ++ISGY + G ++E   LF  MP RNVVSW AMI GF  N               
Sbjct: 231 VVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALNSMSYNTQ 290

Query: 105 ------------GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRC 152
                       G +  A   FD +P RD  S +++++G    G++ +A  +      R 
Sbjct: 291 SCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDR- 349

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI------PVNC---------------DR 191
               D V A+  ++ G+ Q     EA  LF ++      P+N                D+
Sbjct: 350 ----DAV-AWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQ 404

Query: 192 GEG------NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
           G          +F+ +++  NS+I  YAK G++  A  IF +M+ RD  SWN+MI G+ H
Sbjct: 405 GRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSH 464

Query: 246 VLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMP-----QKNLV 296
                EA  +F  M     HP+++T+  ++S  +  G L    + F  M      Q  L 
Sbjct: 465 HGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDAMSDVFAIQPQLE 524

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS-GIVDLHLGMQIHQM 355
            +  M+         E A +   ++  E   PD   + ++L +   G+++  +  +  + 
Sbjct: 525 HYVCMVNLLGRAGKVEEAEEFISKLPFE---PDLTIWGALLGVCGFGMINTGVARRAAKR 581

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
           + +    + P +  L  ++A  G   E   + +EM L
Sbjct: 582 LLELDPLNAPAHVVLCNIHASIGQRAEEGQLRKEMGL 618


>gi|357138593|ref|XP_003570875.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 664

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/601 (36%), Positives = 355/601 (59%), Gaps = 46/601 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+ +++   +A AR++FDEMP+R+V +WN MISG + +R    L +AR +FD MP R+ 
Sbjct: 49  VITAHLRAGRVAAARRVFDEMPERNVFTWNCMISGLVGNR---MLADARRVFDAMPVRNP 105

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  +++GYA+ G + EA  LF+ MP RNVVSWNAM+SG+L+NG V  A E FD MP R
Sbjct: 106 VSWAALLTGYARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFDMMPSR 165

Query: 121 DSASLSALVSGLIQNGELDEAARVL--------VKCGSRCDG---------GEDLVR--- 160
           +  S   ++SG I+   L EA  +           C +   G          E+L     
Sbjct: 166 NDVSWLTMISGYIKKRRLREARELFDLSPSHPTSVCNALLSGYVALSCLKDAEELFGRMQ 225

Query: 161 -----AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
                ++N +I GY + GR++ A+ LFD++P            +++ +SW +++  Y + 
Sbjct: 226 RRDPVSWNVMITGYARAGRMQVAQSLFDEMP------------QKDTISWTAVMRGYLQN 273

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
           GDV ++ ++F+ + +RD  +WNTM+ G++    +++A  LF +MP  D ++WN ++ G+ 
Sbjct: 274 GDVDASWKVFQDIPDRDVVAWNTMMGGFVQSERLDDALRLFAEMPERDLVSWNTILQGHV 333

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           Q G++  A  +F+ MP+K+  SWN++I+G   +KD EGA+ L  +M   G +PD  T S 
Sbjct: 334 QQGDMATANTWFRGMPEKDETSWNTLISG---HKD-EGALALLSEMIRGGLRPDEATLSV 389

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           ++S+ + +V L  G  +H    KT    D  + ++LI+MY++CG I EA  +F+ + + +
Sbjct: 390 VISICASLVALGYGKMVHLYAVKTGFEHDALVMSSLISMYSKCGLIAEASQVFK-LLVQR 448

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           + V+WNAMI   A HG A+EAL+LF  M      P + TF+SVLSACAH G + EG ++F
Sbjct: 449 DTVTWNAMIATYAYHGMASEALKLFNKMTKDGFRPDHATFLSVLSACAHKGDLYEGCRYF 508

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           +SM  ++ + PR +H++ +VD++GR G +  A D  + +P +     W  L  AC  H +
Sbjct: 509 RSMQEDWNLTPRSDHYSCMVDLLGRLGFIYQAYDFTRKIPSDLQINAWETLFSACNAHGD 568

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           V+L +V A+ +++  P +   Y LL N+YA    W  A  VR +MK   +KK TG SWV+
Sbjct: 569 VQLGEVIAKDVLQARPSDGGMYTLLANIYASKEMWSSAASVRGVMKEQGLKKETGCSWVE 628

Query: 575 F 575
            
Sbjct: 629 L 629



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 139/471 (29%), Positives = 215/471 (45%), Gaps = 77/471 (16%)

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
           ++  WNA+I+  L+ G VA A   FD MP R+  + + ++SGL+ N  L +A RV     
Sbjct: 42  DIFQWNAVITAHLRAGRVAAARRVFDEMPERNVFTWNCMISGLVGNRMLADARRVFDAMP 101

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
            R         ++  L+ GY + GRV EAR+LFD++P             RN+VSWN+M+
Sbjct: 102 VRNP------VSWAALLTGYARCGRVAEARELFDRMP------------DRNVVSWNAMM 143

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP-HP------ 262
             Y + G V  ARE+F+ M  R+  SW TMISGYI    + EA  LF   P HP      
Sbjct: 144 SGYLRNGMVERARELFDMMPSRNDVSWLTMISGYIKKRRLREARELFDLSPSHPTSVCNA 203

Query: 263 ------------------------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
                                   D ++WN M++GYA+ G +++A   F  MPQK+ +SW
Sbjct: 204 LLSGYVALSCLKDAEELFGRMQRRDPVSWNVMITGYARAGRMQVAQSLFDEMPQKDTISW 263

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
            +++ G   N D + + K+F  +      PDR    +  +M  G V         ++  +
Sbjct: 264 TAVMRGYLQNGDVDASWKVFQDI------PDRDVV-AWNTMMGGFVQSERLDDALRLFAE 316

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
               D+   N ++  + + G +  A   F  M   K+  SWN +I G    G    AL L
Sbjct: 317 MPERDLVSWNTILQGHVQQGDMATANTWFRGMP-EKDETSWNTLISGHKDEG----ALAL 371

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH----FASLV 474
              M    + P   T   V+S C  A LV  G   +  MV+ Y ++   EH     +SL+
Sbjct: 372 LSEMIRGGLRPDEATLSVVISIC--ASLVALG---YGKMVHLYAVKTGFEHDALVMSSLI 426

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
            +  + G + +A  + K +  + D   W A++     H       +A+EAL
Sbjct: 427 SMYSKCGLIAEASQVFK-LLVQRDTVTWNAMIATYAYHG------MASEAL 470


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/563 (38%), Positives = 338/563 (60%), Gaps = 23/563 (4%)

Query: 13  KARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAK 72
           +ARK FD +  + + SWN ++SGY S+   G  +EAR LFD M ER+ V+WN ++SGY K
Sbjct: 35  EARKFFDSLQFKAIGSWNSIVSGYFSN---GLPKEARQLFDEMSERNVVSWNGLVSGYIK 91

Query: 73  TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGL 132
              + EA  +F  MP RNVVSW AM+ G++Q G V  A   F RMP R+  S + +  GL
Sbjct: 92  NRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGL 151

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           I +G +D+A ++      +     D+V + N +I G  + GRV+EAR +FD++       
Sbjct: 152 IDDGRIDKARKLYDMMPVK-----DVVASTN-MIGGLCREGRVDEARLIFDEMR------ 199

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
                 +RN+V+W +MI  Y +   V  AR++FE M E+   SW +M+ GY     +E+A
Sbjct: 200 ------ERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDA 253

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
              F  MP    +  NAM+ G+ ++G +  A   F  M  ++  +W  MI   E      
Sbjct: 254 EEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFEL 313

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALI 371
            A+ LF QMQ +G +P   +  SILS+ + +  L  G Q+H  +V      DV + + L+
Sbjct: 314 EALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLM 373

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
           TMY +CG +V+A+++F+     K+++ WN++I G ASHG   EAL++F  M S   +P  
Sbjct: 374 TMYVKCGELVKAKLVFDRFSS-KDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNK 432

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           +T I++L+AC++AG +EEG + F+SM +++ + P +EH++  VD++GR G+++ AM+LI+
Sbjct: 433 VTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIE 492

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
            M  +PD  VWGALLGAC+ H+ ++LA+VAA+ L + EP+N+  YVLL ++ A   +W D
Sbjct: 493 SMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGD 552

Query: 552 ANEVRLLMKSNNIKKPTGYSWVD 574
              VR  M++NN+ K  G SW++
Sbjct: 553 VAVVRKNMRTNNVSKFPGCSWIE 575



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 219/450 (48%), Gaps = 62/450 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++SGY+K R + +AR +F+ MP+R+VVSW  M+ GY+     G + EA  LF  MPER+ 
Sbjct: 85  LVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQ---EGMVGEAESLFWRMPERNE 141

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  +  G    G +++A +L++ MP ++VV+   MI G  + G V  A   FD M  R
Sbjct: 142 VSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRER 201

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  + + +++G  QN  +D A ++      + +       ++ ++++GY   GR+E+A +
Sbjct: 202 NVVTWTTMITGYRQNNRVDVARKLFEVMPEKTE------VSWTSMLLGYTLSGRIEDAEE 255

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            F+ +P+            + +++ N+MI+ + + G++  AR +F+ M +RD  +W  MI
Sbjct: 256 FFEVMPM------------KPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMI 303

Query: 241 SGYIHVLDMEEASNLFVKMPHP-------------------------------------- 262
             Y       EA +LF +M                                         
Sbjct: 304 KAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFD 363

Query: 263 -DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            D    + +++ Y + G L  A   F R   K+++ WNS+I+G  ++   E A+K+F +M
Sbjct: 364 DDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEM 423

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTK-TVIPDVPINNALITMYARCGA 379
              G  P++ T  +IL+  S    L  G++I + M +K  V P V   +  + M  R G 
Sbjct: 424 PSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQ 483

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           + +A  + E M +  +   W A++G C +H
Sbjct: 484 VDKAMELIESMTIKPDATVWGALLGACKTH 513



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 147/298 (49%), Gaps = 22/298 (7%)

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           ++ G +  AR+ F+ +  +   SWN+++SGY      +EA  LF +M   + ++WN +VS
Sbjct: 28  SRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVS 87

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
           GY +   +  A + F+ MP++N+VSW +M+ G         A  LF +M      P+R+ 
Sbjct: 88  GYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM------PERNE 141

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
            S  + M  G++D     +  ++     + DV  +  +I    R G + EAR+IF+EM+ 
Sbjct: 142 VSWTV-MFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMR- 199

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
            +NVV+W  MI G   +     A +LF+ M       T +++ S+L     +G +E+  +
Sbjct: 200 ERNVVTWTTMITGYRQNNRVDVARKLFEVMPE----KTEVSWTSMLLGYTLSGRIEDAEE 255

Query: 453 HFKSMVNEYGIEPRIEHFASLVDI--VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
            F+ M     ++P I   A +V    VG   +     DL++    + D A W  ++ A
Sbjct: 256 FFEVM----PMKPVIACNAMIVGFGEVGEISKARRVFDLME----DRDNATWRGMIKA 305


>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
 gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
          Length = 655

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/579 (37%), Positives = 344/579 (59%), Gaps = 33/579 (5%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+SG ++ R +A+ARK+FD MP R+ VSW  +++GY      G + EAR LF+ +P+R+ 
Sbjct: 71  MVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARC---GRVAEARELFNRIPDRNV 127

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN ++SGYA+ G ++ A  LF+ MP R+ VSW  MISG+++   V  A E FD MP  
Sbjct: 128 VSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSP 187

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR---AYNTLIVGYGQRGRVEE 177
            ++  +AL+SG ++ G +  AA VL         G+   R   ++N +I GY + G +  
Sbjct: 188 PTSVCNALLSGYVELGYM-RAAEVLF--------GQMQTRNPVSWNVMITGYARAGSMGI 238

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           A++LFD++P            +++++S  +++  Y + G V +A ++F+ M  RDT +WN
Sbjct: 239 AQRLFDEMP------------EKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWN 286

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           TM+ G++    +++A  LF +MP  D ++WNA++ GY Q G+++ A  +F+R P K+ +S
Sbjct: 287 TMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAIS 346

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WN++I+G    KD EGA+ L  +M   G KPD+ T S ++S+ + +V L  G  +H    
Sbjct: 347 WNTLISG---YKD-EGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAI 402

Query: 358 KTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           KT    D  + ++LI+MY++CG I EA  +FE + L ++ V+WNAMI   A HG A EAL
Sbjct: 403 KTGFEHDALVMSSLISMYSKCGLISEASQVFE-LILQRDTVTWNAMIATYAYHGLADEAL 461

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
           ++F  M      P + TF+S+LSACAH G + EG  HF+SM  ++ + PR +H++ +VD+
Sbjct: 462 KVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDL 521

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           +GR G +  A D  + +P +     W  L   C  H  ++L ++ A  ++K  P +   Y
Sbjct: 522 LGRSGFIHQAYDFTRRIPSDHRTTAWETLFSVCNSHGEIQLGEIIARNVLKARPSDGGMY 581

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
            LL N+YA    W  A  VR  MK   +KK TG SW++ 
Sbjct: 582 TLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIEL 620



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 203/452 (44%), Gaps = 61/452 (13%)

Query: 114 FDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           FD M  R+  + + +VSGLI+N  L EA +V      R         ++  L+ GY + G
Sbjct: 57  FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNS------VSWAALLTGYARCG 110

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
           RV EAR+LF++IP             RN+VSWN+M+  YA+ G V  ARE+F+ M  RD 
Sbjct: 111 RVAEARELFNRIP------------DRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDD 158

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
            SW TMISGYI    + EA  LF  MP P T   NA++SGY ++G +  A   F +M  +
Sbjct: 159 VSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTR 218

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQM-------------------------QVEGEKP 328
           N VSWN MI G         A +LF +M                         +V  + P
Sbjct: 219 NPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMP 278

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFE 388
            R T +    M   + +  L   + ++ ++    D    NA++  Y + G +  A   F 
Sbjct: 279 HRDTVAWNTMMDGFVRNDRLDDAL-KLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFR 337

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
                K+ +SWN +I G    G    AL L   M    + P   T   V+S C  A LV 
Sbjct: 338 RAP-NKDAISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISIC--ASLVS 390

Query: 449 EGRQHFKSMVNEYGIEPRIEH----FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
            G      MV+ + I+   EH     +SL+ +  + G + +A  + + +  + D   W A
Sbjct: 391 LG---CGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFE-LILQRDTVTWNA 446

Query: 505 LLGACRVHNNVELAQVAAEALMKV--EPENST 534
           ++     H   + A    + + K    P+++T
Sbjct: 447 MIATYAYHGLADEALKVFDMMTKAGFRPDHAT 478


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/565 (38%), Positives = 344/565 (60%), Gaps = 25/565 (4%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYA-K 72
           AR  F+ MP R   S+N +++GY  +R     + A  LF  MP RD  ++N +ISG + +
Sbjct: 36  ARAAFEAMPLRTTASYNALLAGYFRNR---LPDAALGLFRRMPSRDLASYNALISGLSLR 92

Query: 73  TGEMEEALRLFNSMP-ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSG 131
              + +A     S+P   +VVS+ +++ G++++G +A+AI  F +MP R+  S + L+ G
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
           L+  G ++EA R+  +   R     D+V A+  ++ GY Q GR+ EAR LFD++P     
Sbjct: 153 LLDAGRVNEARRLFDEMPDR-----DVV-AWTAMLSGYCQAGRITEARALFDEMP----- 201

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEE 251
                  KRN+VSW +MI  YA+ G+V  AR++FE M ER+  SW  M+ GYI    +E+
Sbjct: 202 -------KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVED 254

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           A+ LF  MP       NAM+ G+ Q G ++ A   F++M +++  +W++MI   E N+  
Sbjct: 255 AAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFL 314

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNAL 370
             A+  F +M   G +P+  +  SIL++ + +  L  G ++H  M+  +   DV   +AL
Sbjct: 315 MEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSAL 374

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           ITMY +CG + +A+ +F   +  K++V WN+MI G A HG   +AL +F  MR   + P 
Sbjct: 375 ITMYIKCGNLDKAKRVFHTFEP-KDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPD 433

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            IT+I  L+AC++ G V+EGR+ F SM     I P  EH++ +VD++GR G +E+A DLI
Sbjct: 434 GITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLI 493

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           K MP EPD  +WGAL+GACR+H N E+A+VAA+ L+++EP N+ PYVLL ++Y  VGRW+
Sbjct: 494 KNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWE 553

Query: 551 DANEVRLLMKSNNIKKPTGYSWVDF 575
           DA+++R  + S N+ K  G SW+++
Sbjct: 554 DASKMRKFISSRNLNKSPGCSWIEY 578



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/419 (32%), Positives = 224/419 (53%), Gaps = 31/419 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++ GYV+   +A A +LF +MP+R+ VS+ V++ G +    +G + EAR LFD MP+RD 
Sbjct: 118 LLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLD---AGRVNEARRLFDEMPDRDV 174

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V W  ++SGY + G + EA  LF+ MP RNVVSW AMISG+ QNG+V  A + F+ MP R
Sbjct: 175 VAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER 234

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++ G IQ G +++AA +           E  V A N ++VG+GQRG V+ A+ 
Sbjct: 235 NEVSWTAMLVGYIQAGHVEDAAELFNAM------PEHPVAACNAMMVGFGQRGMVDAAKT 288

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-SWNTM 239
           +F+K+    +R +G         +W++MI  Y +   ++ A   F +ML R    ++ ++
Sbjct: 289 VFEKMR---ERDDG---------TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSV 336

Query: 240 IS-----GYIHVLDM--EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           IS       + VLD   E  + +       D    +A+++ Y + GNL+ A   F     
Sbjct: 337 ISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEP 396

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K++V WNSMI G   +   E A+ +F  M++ G  PD  T+   L+  S    +  G +I
Sbjct: 397 KDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREI 456

Query: 353 HQMVT--KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
              +T   ++ P     + ++ +  R G + EA  + + M +  + V W A++G C  H
Sbjct: 457 FNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMH 515



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 153/307 (49%), Gaps = 24/307 (7%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N+ I   A+AG++  AR  FE M  R T S+N +++GY      + A  LF +MP  D  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 266 TWNAMVSGYA-QIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
           ++NA++SG + +   L  A      +P   ++VS+ S++ G   +     AI+LF QM  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM-- 138

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEA 383
               P+R+  S  + +  G++D     +  ++  +    DV    A+++ Y + G I EA
Sbjct: 139 ----PERNHVSYTV-LLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEA 193

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP--TYITFISVLSAC 441
           R +F+EM   +NVVSW AMI G A +G    A +L      F+V+P    +++ ++L   
Sbjct: 194 RALFDEMP-KRNVVSWTAMISGYAQNGEVNLARKL------FEVMPERNEVSWTAMLVGY 246

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
             AG VE+  + F +M      E  +    +++   G+ G ++ A  + + M  E D   
Sbjct: 247 IQAGHVEDAAELFNAMP-----EHPVAACNAMMVGFGQRGMVDAAKTVFEKM-RERDDGT 300

Query: 502 WGALLGA 508
           W A++ A
Sbjct: 301 WSAMIKA 307


>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
          Length = 729

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/579 (37%), Positives = 344/579 (59%), Gaps = 33/579 (5%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+SG ++ R +A+ARK+FD MP R+ VSW  +++GY      G + EAR LF+ +P+R+ 
Sbjct: 71  MVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARC---GRVAEARELFNRIPDRNV 127

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN ++SGYA+ G ++ A  LF+ MP R+ VSW  MISG+++   V  A E FD MP  
Sbjct: 128 VSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSP 187

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR---AYNTLIVGYGQRGRVEE 177
            ++  +AL+SG ++ G +  AA VL         G+   R   ++N +I GY + G +  
Sbjct: 188 PTSVCNALLSGYVELGYM-RAAEVLF--------GQMQTRNPVSWNVMITGYARAGSMGI 238

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           A++LFD++P            +++++S  +++  Y + G V +A ++F+ M  RDT +WN
Sbjct: 239 AQRLFDEMP------------EKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWN 286

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           TM+ G++    +++A  LF +MP  D ++WNA++ GY Q G+++ A  +F+R P K+ +S
Sbjct: 287 TMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAIS 346

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WN++I+G    KD EGA+ L  +M   G KPD+ T S ++S+ + +V L  G  +H    
Sbjct: 347 WNTLISG---YKD-EGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAI 402

Query: 358 KTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           KT    D  + ++LI+MY++CG I EA  +FE + L ++ V+WNAMI   A HG A EAL
Sbjct: 403 KTGFEHDALVMSSLISMYSKCGLISEASQVFE-LILQRDTVTWNAMIATYAYHGLADEAL 461

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
           ++F  M      P + TF+S+LSACAH G + EG  HF+SM  ++ + PR +H++ +VD+
Sbjct: 462 KVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDL 521

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           +GR G +  A D  + +P +     W  L   C  H  ++L ++ A  ++K  P +   Y
Sbjct: 522 LGRSGFIHQAYDFTRRIPSDHRTTAWETLFSVCNSHGEIQLGEIIARNVLKARPSDGGMY 581

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
            LL N+YA    W  A  VR  MK   +KK TG SW++ 
Sbjct: 582 TLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIEL 620



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 147/492 (29%), Positives = 220/492 (44%), Gaps = 67/492 (13%)

Query: 80  LRLFNSM--PAR----NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI 133
           LR F S+  P R    +V   N  I+   + G VA A   FD M  R+  + + +VSGLI
Sbjct: 17  LRRFCSLGPPQRHAAGDVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLI 76

Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
           +N  L EA +V      R         ++  L+ GY + GRV EAR+LF++IP       
Sbjct: 77  RNRMLAEARKVFDAMPVRNS------VSWAALLTGYARCGRVAEARELFNRIP------- 123

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEAS 253
                 RN+VSWN+M+  YA+ G V  ARE+F+ M  RD  SW TMISGYI    + EA 
Sbjct: 124 -----DRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREAR 178

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
            LF  MP P T   NA++SGY ++G +  A   F +M  +N VSWN MI G         
Sbjct: 179 ELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGI 238

Query: 314 AIKLFIQM-------------------------QVEGEKPDRHTFSSILSMSSGIVDLHL 348
           A +LF +M                         +V  + P R T +    M   + +  L
Sbjct: 239 AQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRL 298

Query: 349 GMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
              + ++ ++    D    NA++  Y + G +  A   F      K+ +SWN +I G   
Sbjct: 299 DDAL-KLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAP-NKDAISWNTLISGYKD 356

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
            G    AL L   M    + P   T   V+S C  A LV  G      MV+ + I+   E
Sbjct: 357 EG----ALSLLSEMIRGGLKPDQATLSVVISIC--ASLVSLG---CGKMVHLWAIKTGFE 407

Query: 469 H----FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           H     +SL+ +  + G + +A  + + +  + D   W A++     H   + A    + 
Sbjct: 408 HDALVMSSLISMYSKCGLISEASQVFE-LILQRDTVTWNAMIATYAYHGLADEALKVFDM 466

Query: 525 LMKV--EPENST 534
           + K    P+++T
Sbjct: 467 MTKAGFRPDHAT 478


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/613 (37%), Positives = 351/613 (57%), Gaps = 56/613 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDV----VSWNVMISGYISSRGSGFLEEARYLFDIMP 56
           ++    K+  + +A  +  +M +  +     +++ ++ G ++++    L +A+ L   M 
Sbjct: 35  LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKS---LPDAKLLHAHMI 91

Query: 57  E-----RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAI 111
           +     +D    N ++S Y K G + EA R+F+ MP +NVVSW AMI+ + ++     A+
Sbjct: 92  QTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEAL 151

Query: 112 EFFDRMPG----RDSASLSALVSGLIQNGELDEAARVLVKCG--SRCDGGEDLVRAY--- 162
            FF  M       +  + ++++        L E    +VK G  S    G  LV  Y   
Sbjct: 152 GFFYEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKR 211

Query: 163 ---------------------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
                                N +I GY Q G +E+A KLF +IP            KR+
Sbjct: 212 GCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIP------------KRD 259

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           +++WN+M+  YA+ GDV +A E+FE+M E++  SWNTMI+GY+    ++EA  LF  MP 
Sbjct: 260 VITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPE 319

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            + ++WNA++SG+AQ G +E AL  FK MP+ N+VSWN+MIAG   N   E A+KLF QM
Sbjct: 320 RNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQM 379

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAI 380
           Q+   KP+  TF+ +L   + +  L  G + H++V ++    DV + N L+ MYA+CG+I
Sbjct: 380 QMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSI 439

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
            +AR +F+ M+  ++  S +AMI G A +G + E+LELF+ M+   + P  +TF+ VLSA
Sbjct: 440 EDARKVFDRMRQ-QDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSA 498

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C HAGLV+EGRQ+F  M   Y I P +EH+  ++D++GR G  ++A DLI  MP +PD  
Sbjct: 499 CCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDAD 558

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
           +WG+LL ACR HNN++L +  A+ L+ + P+N  PYVLL N+YA  GRWDD   VR  MK
Sbjct: 559 MWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMK 618

Query: 561 SNNIKKPTGYSWV 573
              +KK  G SW+
Sbjct: 619 DRKVKKKLGCSWI 631


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/565 (38%), Positives = 343/565 (60%), Gaps = 25/565 (4%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYA-K 72
           AR  F+ MP R   S+N +++GY  +R     + A  LF  MP RD  ++N +ISG + +
Sbjct: 36  ARAAFEAMPLRTTASYNALLAGYFRNR---LPDAALGLFRRMPSRDLASYNALISGLSLR 92

Query: 73  TGEMEEALRLFNSMP-ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSG 131
              + +A     S+P   +VVS+ +++ G++++G +A+AI  F +MP R+  S + L+ G
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
           L+  G ++EA R+  +   R     D+V A+  ++ GY Q GR+ EAR LFD++P     
Sbjct: 153 LLDAGRVNEARRLFDEMPDR-----DVV-AWTAMLSGYCQAGRITEARALFDEMP----- 201

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEE 251
                  KRN+VSW +MI  YA+ G+V  AR++FE M ER+  SW  M+ GYI    +E+
Sbjct: 202 -------KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVED 254

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           A+ LF  MP       NAM+ G+ Q G ++ A   F++M +++  +W++MI   E N+  
Sbjct: 255 AAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFL 314

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNAL 370
             A+  F +M   G +P+  +  SIL++ + +  L  G ++H  M+  +   DV   +AL
Sbjct: 315 MEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSAL 374

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           ITMY +CG + +A+ +F   +  K++V WN+MI G A HG   +AL +F  MR   + P 
Sbjct: 375 ITMYIKCGNLDKAKRVFHTFEP-KDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPD 433

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            IT+I  L+AC++ G V+EGR+ F SM     I P  EH++ +VD++GR G +E+A DLI
Sbjct: 434 GITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLI 493

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           K MP EPD  +WGAL+GACR+H N E+A+ AA+ L+++EP N+ PYVLL ++Y  VGRW+
Sbjct: 494 KNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWE 553

Query: 551 DANEVRLLMKSNNIKKPTGYSWVDF 575
           DA+++R  + S N+ K  G SW+++
Sbjct: 554 DASKMRKFISSRNLNKSPGCSWIEY 578



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 138/419 (32%), Positives = 225/419 (53%), Gaps = 31/419 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++ GYV+   +A A +LF +MP+R+ VS+ V++ G +    +G + EAR LFD MP+RD 
Sbjct: 118 LLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLD---AGRVNEARRLFDEMPDRDV 174

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V W  ++SGY + G + EA  LF+ MP RNVVSW AMISG+ QNG+V  A + F+ MP R
Sbjct: 175 VAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER 234

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++ G IQ G +++AA +           E  V A N ++VG+GQRG V+ A+ 
Sbjct: 235 NEVSWTAMLVGYIQAGHVEDAAELFNAM------PEHPVAACNAMMVGFGQRGMVDAAKT 288

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-SWNTM 239
           +F+K+   C+R +G         +W++MI  Y +   ++ A   F +ML R    ++ ++
Sbjct: 289 VFEKM---CERDDG---------TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSV 336

Query: 240 IS-----GYIHVLDM--EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           IS       + VLD   E  + +       D    +A+++ Y + GNL+ A   F     
Sbjct: 337 ISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEP 396

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K++V WNSMI G   +   E A+ +F  M++ G  PD  T+   L+  S    +  G +I
Sbjct: 397 KDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREI 456

Query: 353 HQMVT--KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
              +T   ++ P     + ++ +  R G + EA  + + M +  + V W A++G C  H
Sbjct: 457 FNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMH 515



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 153/307 (49%), Gaps = 24/307 (7%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N+ I   A+AG++  AR  FE M  R T S+N +++GY      + A  LF +MP  D  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 266 TWNAMVSGYA-QIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
           ++NA++SG + +   L  A      +P   ++VS+ S++ G   +     AI+LF QM  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM-- 138

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEA 383
               P+R+  S  + +  G++D     +  ++  +    DV    A+++ Y + G I EA
Sbjct: 139 ----PERNHVSYTV-LLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEA 193

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP--TYITFISVLSAC 441
           R +F+EM   +NVVSW AMI G A +G    A +L      F+V+P    +++ ++L   
Sbjct: 194 RALFDEMP-KRNVVSWTAMISGYAQNGEVNLARKL------FEVMPERNEVSWTAMLVGY 246

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
             AG VE+  + F +M      E  +    +++   G+ G ++ A  + + M  E D   
Sbjct: 247 IQAGHVEDAAELFNAMP-----EHPVAACNAMMVGFGQRGMVDAAKTVFEKM-CERDDGT 300

Query: 502 WGALLGA 508
           W A++ A
Sbjct: 301 WSAMIKA 307


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/522 (40%), Positives = 309/522 (59%), Gaps = 51/522 (9%)

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
           MP RD V+WN++I+GY K G  +E+ RLF  MP +NVVSWN+MI+G +++  +  A ++F
Sbjct: 1   MPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYF 60

Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
             MP R++AS +A++SGL++                           Y+          R
Sbjct: 61  QAMPQRNTASWNAMISGLVR---------------------------YD----------R 83

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
           VEEA +LF+++P            +RN++S+ +M+  YAK G++  AR +F  M +++  
Sbjct: 84  VEEASRLFEEMP------------RRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVV 131

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
           SW  MISGY+     +EA NLF +MP  + +   AM++GY + G  + A   F ++P ++
Sbjct: 132 SWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRD 191

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           L SWN+MI G   N   E A+KL  QM   G +PD  T  S+L+  S +  L  G + H 
Sbjct: 192 LASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHV 251

Query: 355 MVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
           +V K+     + I NALITMY +CG+I+++ + F ++    +VVSWNAMI   A HGF  
Sbjct: 252 LVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDH-PDVVSWNAMIAAFARHGFYD 310

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
            AL  F  MRS +V P  ITF+S+LSAC HAG V E    F SM+  Y I PR EHFA L
Sbjct: 311 RALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACL 370

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           VDI+ R G++E A  +I+ MPFE D  +WGALL AC VH NV+L ++AA+ ++++EP+NS
Sbjct: 371 VDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNS 430

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
             YV+L N+YA  G W +   VR LM+   +KK   YSW++ 
Sbjct: 431 GAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEI 472



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 134/433 (30%), Positives = 213/433 (49%), Gaps = 68/433 (15%)

Query: 21  MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEAL 80
           MP RD VSWN +I+GY  +   G  +E++ LF +MP ++ V+WN++I+G  +   ++EA 
Sbjct: 1   MPHRDTVSWNSIITGYWKN---GCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAW 57

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
           + F +MP RN  SWNAMISG ++   V  A   F+ MP R+  S +A+V G  + GE+ E
Sbjct: 58  QYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEI-E 116

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
            AR L  C  + +     V ++  +I GY + G+ +EA  LF+++P             +
Sbjct: 117 QARALFNCMPQKN-----VVSWTVMISGYVENGKFDEAENLFEQMP------------DK 159

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM- 259
           NIV+  +MI  Y K G    A+ +F+Q+  RD  SWN MI+GY      EEA  L  +M 
Sbjct: 160 NIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQML 219

Query: 260 ---PHPDTLTW-----------------------------------NAMVSGYAQIGNL- 280
                PD  T                                    NA+++ Y + G++ 
Sbjct: 220 KMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSIL 279

Query: 281 --ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
             ELA   F+++   ++VSWN+MIA    +  Y+ A+  F +M+    +PD  TF S+LS
Sbjct: 280 DSELA---FRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLS 336

Query: 339 MSSGIVDLHLGMQ-IHQMVTKTVIPDVPINNA-LITMYARCGAIVEARIIFEEMKLLKNV 396
                  +H  +   + M+    I   P + A L+ + +R G + +A  I +EM    + 
Sbjct: 337 ACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADC 396

Query: 397 VSWNAMIGGCASH 409
             W A++  C  H
Sbjct: 397 GIWGALLAACHVH 409



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 200/418 (47%), Gaps = 56/418 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+G ++   + +A + F  MPQR+  SWN MISG +       +EEA  LF+ MP R+ 
Sbjct: 43  MIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRY---DRVEEASRLFEEMPRRNV 99

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           +++  ++ GYAK GE+E+A  LFN MP +NVVSW  MISG+++NG    A   F++MP +
Sbjct: 100 ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDK 159

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  +++A+++G  + G+ D+A  +  +   R     DL  ++N +I GY Q G  EEA K
Sbjct: 160 NIVAMTAMITGYCKEGKTDKAKILFDQIPCR-----DLA-SWNAMITGYAQNGSGEEALK 213

Query: 181 LFD---KIPVNCDRG----------------EGNVR--------FKRNIVSWNSMIMCYA 213
           L     K+ +  D                  EG           ++  I   N++I  Y 
Sbjct: 214 LHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYC 273

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNA 269
           K G ++ +   F Q+   D  SWN MI+ +      + A   F +M      PD +T+ +
Sbjct: 274 KCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLS 333

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLV-----SWNSMIAGCETNKDYEGAIKLFIQMQVE 324
           ++S     G +  +L++F  M +   +      +  ++         E A K+  +M  E
Sbjct: 334 LLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFE 393

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA----LITMYARCG 378
               D   + ++L+       +HL +++ ++  K ++   P N+     L  +YA  G
Sbjct: 394 A---DCGIWGALLA----ACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAG 444


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/565 (38%), Positives = 343/565 (60%), Gaps = 25/565 (4%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYA-K 72
           AR  F+ MP R   S+N +++GY  +R     + A  LF  MP RD  ++N +ISG + +
Sbjct: 36  ARAAFEAMPLRTTASYNALLAGYFRNR---LPDAALGLFRRMPSRDLASYNALISGLSLR 92

Query: 73  TGEMEEALRLFNSMP-ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSG 131
              + +A     S+P   +VVS+ +++ G++++G +A+AI  F +MP R+  S + L+ G
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
           L+  G ++EA R+  +   R     D+V A+  ++ GY Q GR+ EAR LFD++P     
Sbjct: 153 LLDAGRVNEARRLFDEMPDR-----DVV-AWTAMLSGYCQAGRITEARALFDEMP----- 201

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEE 251
                  KRN+VSW +MI  YA+ G+V  AR++FE M ER+  SW  M+ GYI    +E+
Sbjct: 202 -------KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVED 254

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           A+ LF  MP       NAM+ G+ Q G ++ A   F++M +++  +W++MI   E N+  
Sbjct: 255 AAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFL 314

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNAL 370
             A+  F +M   G +P+  +  SIL++ + +  L  G ++H  M+  +   DV   +AL
Sbjct: 315 MEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSAL 374

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           ITMY +CG + +A+ +F   +  K++V WN+MI G A HG   +AL +F  MR   + P 
Sbjct: 375 ITMYIKCGNLDKAKRVFHTFEP-KDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPD 433

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            IT+I  L+AC++ G V+EGR+ F SM     I P  EH++ +VD++GR G +E+A DLI
Sbjct: 434 GITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLI 493

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           K MP EPD  +WGAL+GACR+H N E+A+ AA+ L+++EP N+ PYVLL ++Y  VGRW+
Sbjct: 494 KNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWE 553

Query: 551 DANEVRLLMKSNNIKKPTGYSWVDF 575
           DA+++R  + S N+ K  G SW+++
Sbjct: 554 DASKMRKFISSRNLNKSPGCSWIEY 578



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 138/419 (32%), Positives = 225/419 (53%), Gaps = 31/419 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++ GYV+   +A A +LF +MP+R+ VS+ V++ G +    +G + EAR LFD MP+RD 
Sbjct: 118 LLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLD---AGRVNEARRLFDEMPDRDV 174

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V W  ++SGY + G + EA  LF+ MP RNVVSW AMISG+ QNG+V  A + F+ MP R
Sbjct: 175 VAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER 234

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++ G IQ G +++AA +           E  V A N ++VG+GQRG V+ A+ 
Sbjct: 235 NEVSWTAMLVGYIQAGHVEDAAELFNAM------PEHPVAACNAMMVGFGQRGMVDAAKT 288

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-SWNTM 239
           +F+K+   C+R +G         +W++MI  Y +   ++ A   F +ML R    ++ ++
Sbjct: 289 VFEKM---CERDDG---------TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSV 336

Query: 240 IS-----GYIHVLDM-EEASNLFVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           IS       + VLD   E     ++     D    +A+++ Y + GNL+ A   F     
Sbjct: 337 ISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEP 396

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K++V WNSMI G   +   E A+ +F  M++ G  PD  T+   L+  S    +  G +I
Sbjct: 397 KDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREI 456

Query: 353 HQMVT--KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
              +T   ++ P     + ++ +  R G + EA  + + M +  + V W A++G C  H
Sbjct: 457 FNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMH 515



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 153/307 (49%), Gaps = 24/307 (7%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N+ I   A+AG++  AR  FE M  R T S+N +++GY      + A  LF +MP  D  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 266 TWNAMVSGYA-QIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
           ++NA++SG + +   L  A      +P   ++VS+ S++ G   +     AI+LF QM  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM-- 138

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEA 383
               P+R+  S  + +  G++D     +  ++  +    DV    A+++ Y + G I EA
Sbjct: 139 ----PERNHVSYTV-LLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEA 193

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP--TYITFISVLSAC 441
           R +F+EM   +NVVSW AMI G A +G    A +L      F+V+P    +++ ++L   
Sbjct: 194 RALFDEMP-KRNVVSWTAMISGYAQNGEVNLARKL------FEVMPERNEVSWTAMLVGY 246

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
             AG VE+  + F +M      E  +    +++   G+ G ++ A  + + M  E D   
Sbjct: 247 IQAGHVEDAAELFNAMP-----EHPVAACNAMMVGFGQRGMVDAAKTVFEKM-CERDDGT 300

Query: 502 WGALLGA 508
           W A++ A
Sbjct: 301 WSAMIKA 307


>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
          Length = 655

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/579 (37%), Positives = 344/579 (59%), Gaps = 33/579 (5%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+SG ++ R +A+ARK+FD MP R+ VSW  +++GY      G + EAR LF+ +P+R+ 
Sbjct: 71  MVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARC---GRVAEARELFNRIPDRNV 127

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN ++SGYA+ G ++ A  LF+ MP R+ VSW  MISG+++   V  A E FD MP  
Sbjct: 128 VSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSP 187

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR---AYNTLIVGYGQRGRVEE 177
            ++  +AL+SG ++ G +  AA VL         G+   R   ++N +I GY + G +  
Sbjct: 188 PTSVCNALLSGYVELGYM-RAAEVLF--------GQMQTRNPVSWNVMITGYARAGSMGI 238

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           A++LFD++P            +++++S  +++  Y + G V +A ++F+ M  RDT +WN
Sbjct: 239 AQRLFDEMP------------EKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWN 286

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           TM+ G++    +++A  LF +MP  D ++W+A++ GY Q G+++ A  +F R P K+ +S
Sbjct: 287 TMMDGFVRNDRLDDALKLFSEMPDRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAIS 346

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WN++I+G    KD EGA+ L  +M   G KPD+ T S ++S+ + +V L  G  +H    
Sbjct: 347 WNTLISG---YKD-EGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAI 402

Query: 358 KTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           KT    D  + ++LI+MY++CG I EA  +FE + L ++ V+WNAMI   A HG A EAL
Sbjct: 403 KTGFEHDALVMSSLISMYSKCGLISEASQVFE-LILQRDTVTWNAMIATYAYHGLADEAL 461

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
           ++F  M      P + TF+S+LSACAH G + EG  HF+SM  ++ + PR +H++ +VD+
Sbjct: 462 KVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDL 521

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           +GR G +  A D  + +P +     W  L  AC  H  ++L ++ A  ++K  P +   Y
Sbjct: 522 LGRSGFIHQAYDFTRRIPSDHRTTAWETLFSACNSHGEIQLGEIIARNVLKARPSDGGMY 581

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
            LL N+YA    W  A  VR  MK   +KK TG SW++ 
Sbjct: 582 TLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIEL 620



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 136/457 (29%), Positives = 203/457 (44%), Gaps = 71/457 (15%)

Query: 114 FDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           FD M  R+  + + +VSGLI+N  L EA +V      R         ++  L+ GY + G
Sbjct: 57  FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNS------VSWAALLTGYARCG 110

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
           RV EAR+LF++IP             RN+VSWN+M+  YA+ G V  ARE+F+ M  RD 
Sbjct: 111 RVAEARELFNRIP------------DRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDD 158

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
            SW TMISGYI    + EA  LF  MP P T   NA++SGY ++G +  A   F +M  +
Sbjct: 159 VSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTR 218

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM----SSGIVD---- 345
           N VSWN MI G      Y  A  + I  ++  E P++   S    M     +G VD    
Sbjct: 219 NPVSWNVMITG------YARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWK 272

Query: 346 LHLGMQIHQMVTKTVIPDVPINN----------------------ALITMYARCGAIVEA 383
           +   M     V    + D  + N                      A++  Y + G +  A
Sbjct: 273 VFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWHAILQGYVQQGDMDSA 332

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
            + F      K+ +SWN +I G    G    AL L   M    + P   T   V+S C  
Sbjct: 333 NVWFPRAP-NKDAISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISIC-- 385

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEH----FASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           A LV  G      MV+ + I+   EH     +SL+ +  + G + +A  + + +  + D 
Sbjct: 386 ASLVSLG---CGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFE-LILQRDT 441

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKV--EPENST 534
             W A++     H   + A    + + K    P+++T
Sbjct: 442 VTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHAT 478


>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 891

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/576 (38%), Positives = 335/576 (58%), Gaps = 54/576 (9%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM-PERDC 60
           IS   +  ++ +ARK+FDEM +RD   W  MISGYI     G + EAR LFD    ++  
Sbjct: 52  ISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIK---CGLINEARKLFDRPDAQKSV 108

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           + W  ++SGY K   +EEA RLFN MP RNVVSWN MI G+ +NG    A++ F RMP R
Sbjct: 109 IVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPER 168

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S + +++ L   G +D+A R+  +   R     D+V ++ T++ G  + GRV+ AR+
Sbjct: 169 NVVSWNTVMTALAHCGRIDDAERLFNEMRER-----DVV-SWTTMVAGLSKNGRVDAARE 222

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +FDK+P+            RN+VSWN+MI  YA+ G    A ++FE+M ERD  SWNTM+
Sbjct: 223 VFDKMPI------------RNVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMV 270

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +G+I   D+  A  LF  MP  + +TW AM++GY Q G  E AL  F +M Q N      
Sbjct: 271 TGFIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLFNKM-QAN------ 323

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
                                  +G KP   TF ++L   S +  L  G QIHQM++KTV
Sbjct: 324 -----------------------DGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTV 360

Query: 361 IPD-VPINNALITMYARCGAIVEARIIFEE-MKLLKNVVSWNAMIGGCASHGFATEALEL 418
             +   + +ALI MY++CG    A+ +F++ +    ++++WN MI   A HG+  EA+ L
Sbjct: 361 FQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNEAINL 420

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  M+        +T++ +L+AC+HAGL +EG ++F  ++    I+ R +H+  L+D+ G
Sbjct: 421 FNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYIQVREDHYTCLIDLCG 480

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           R GRL++A+++I+G+  E   ++WGALL  C VH N ++ ++ A+ ++K+EPEN+  Y+L
Sbjct: 481 RAGRLDEALNIIEGLGKEVSLSLWGALLAGCSVHGNADIGKLVADKVLKMEPENADTYLL 540

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             NMYA VG  ++A  VR+ MK   +KK  G SW+D
Sbjct: 541 ASNMYASVGMREEAANVRMKMKKKGLKKQPGCSWID 576



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 144/457 (31%), Positives = 222/457 (48%), Gaps = 66/457 (14%)

Query: 1   MISGYVKRREMAKARKLFDEM-PQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           MISGY+K   + +ARKLFD    Q+ V+ W  M+SGYI       +EEA  LF+ MP R+
Sbjct: 82  MISGYIKCGLINEARKLFDRPDAQKSVIVWTAMVSGYIKMNR---IEEAERLFNEMPVRN 138

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            V+WNT+I GYA+ G  +EAL LF  MP RNVVSWN +++     G + +A   F+ M  
Sbjct: 139 VVSWNTMIDGYARNGRTQEALDLFGRMPERNVVSWNTVMTALAHCGRIDDAERLFNEMRE 198

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           RD  S + +V+GL +NG +D A  V  K   R       V ++N +I GY Q GR +EA 
Sbjct: 199 RDVVSWTTMVAGLSKNGRVDAAREVFDKMPIRN------VVSWNAMIAGYAQNGRFDEAL 252

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           KLF+++P            +R++ SWN+M+  + + GD+  A ++F  M +++  +W  M
Sbjct: 253 KLFERMP------------ERDMPSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVITWTAM 300

Query: 240 ISGYIHVLDMEEASNLFVKMPHPD------------------------------------ 263
           ++GY+     EEA  LF KM   D                                    
Sbjct: 301 MTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTV 360

Query: 264 ----TLTWNAMVSGYAQIGNLELALDFFKR--MPQKNLVSWNSMIAGCETNKDYEGAIKL 317
               T   +A+++ Y++ G+  +A   F        +L++WN MIA    +     AI L
Sbjct: 361 FQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNEAINL 420

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINN--ALITMYA 375
           F +MQ  G + +  T+  +L+  S       G +    + K     V  ++   LI +  
Sbjct: 421 FNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYIQVREDHYTCLIDLCG 480

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
           R G + EA  I E +    ++  W A++ GC+ HG A
Sbjct: 481 RAGRLDEALNIIEGLGKEVSLSLWGALLAGCSVHGNA 517



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 176/364 (48%), Gaps = 39/364 (10%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPD-- 263
           N  I    + G V  AR++F++M +RD+  W TMISGYI    + EA  LF     PD  
Sbjct: 49  NYFISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLF---DRPDAQ 105

Query: 264 --TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
              + W AMVSGY ++  +E A   F  MP +N+VSWN+MI G   N   + A+ LF   
Sbjct: 106 KSVIVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLF--- 162

Query: 322 QVEGEKPDRHTFSSILSMSS----GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARC 377
              G  P+R+  S    M++    G +D        ++  +    DV     ++   ++ 
Sbjct: 163 ---GRMPERNVVSWNTVMTALAHCGRID-----DAERLFNEMRERDVVSWTTMVAGLSKN 214

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G +  AR +F++M  ++NVVSWNAMI G A +G   EAL+LF+ M   + +P++ T +  
Sbjct: 215 GRVDAAREVFDKMP-IRNVVSWNAMIAGYAQNGRFDEALKLFERMPE-RDMPSWNTMV-- 270

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP--- 494
            +     G +    Q F +M      +  +  + +++    +HG  E+A+ L   M    
Sbjct: 271 -TGFIQNGDLNRAEQLFHAMP-----QKNVITWTAMMTGYVQHGLSEEALKLFNKMQAND 324

Query: 495 -FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL--LYNMYADVGRWDD 551
             +P    +  +LGAC     +   Q   + + K   + ST YV+  L NMY+  G +  
Sbjct: 325 GLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQEST-YVVSALINMYSKCGDFHV 383

Query: 552 ANEV 555
           A ++
Sbjct: 384 AKKM 387


>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/565 (36%), Positives = 321/565 (56%), Gaps = 54/565 (9%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           AR+LFD  P RDVVSW  M++ Y  +R     E +  L      R+ VTW  ++SGYA+ 
Sbjct: 58  ARRLFDRTPDRDVVSWTAMVAAY--ARQGQLHEASALLHRPDARRNVVTWTALLSGYARA 115

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI 133
             ++EA  LF+ MP RNVVSWN M+  +   G +  A   FD MP RD+ S + L++ L+
Sbjct: 116 RRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMPVRDAGSWNILLAALV 175

Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
           ++G +                                     +EAR+LF+++P       
Sbjct: 176 RSGTM-------------------------------------DEARRLFERMP------- 191

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEAS 253
                +RN++SW +MI   A++G    AR +F+ M ER+  SWN MISGY   L ++EA 
Sbjct: 192 -----ERNVMSWTTMISGLARSGSADEARALFDGMPERNVVSWNAMISGYARNLRIDEAL 246

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
           +LF+ MP  D  +WN M++G+ Q  +L+ A + F  MP++N+VSW +M+ GC    + E 
Sbjct: 247 DLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEM 306

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALIT 372
           A+++F  M V+G +P++ TF   +   S +  L  G Q+HQM+ KT    D  I ++L+ 
Sbjct: 307 ALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMK 366

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           +YA+CG I  AR +F ++   K+V+SWN MI   A HG   EA+ L++ M+  +  P  +
Sbjct: 367 LYAKCGEIRLARKVF-DLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDV 425

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           T++ +LSAC+H+GLV+EG + F+ M  +  I  R EH++ L+D+  R GRL+DA  LI G
Sbjct: 426 TYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLING 485

Query: 493 MPFEPDKA-VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
           +  +P  + VW ALLG C  H N  +  +AA  L++ EP+N+  Y LL N+YA  G+W +
Sbjct: 486 LKLKPTSSTVWSALLGGCNAHGNESIGDLAARNLLEAEPDNAGTYTLLSNIYASAGKWKE 545

Query: 552 ANEVRLLMKSNNIKKPTGYSWVDFS 576
           A ++R  M    +KK  G SW++ +
Sbjct: 546 AAKIRSEMNDRGLKKQPGCSWIELA 570



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 146/479 (30%), Positives = 246/479 (51%), Gaps = 38/479 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++SGY + R + +AR LFD MP+R+VVSWN M+  Y S   +G +  A  LFD MP RD 
Sbjct: 108 LLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYAS---AGRMGAACALFDGMPVRDA 164

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN +++   ++G M+EA RLF  MP RNV+SW  MISG  ++G    A   FD MP R
Sbjct: 165 GSWNILLAALVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMPER 224

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++SG  +N  +DEA  + +    R       V ++N +I G+ Q   +++A++
Sbjct: 225 NVVSWNAMISGYARNLRIDEALDLFMNMPERD------VASWNIMITGFIQNKDLKKAQE 278

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD++P            KRN+VSW +M+    +  +   A ++F  ML  D    N + 
Sbjct: 279 LFDEMP------------KRNVVSWTTMMNGCLQGNESEMALQVFNGMLV-DGIRPNQVT 325

Query: 241 --------SGYIHVLDMEEASNLFVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMP 291
                   S    + + ++   +  K P   D    ++++  YA+ G + LA   F    
Sbjct: 326 FLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSG 385

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM--SSGIVDLHLG 349
           +K+++SWN MIA    +     AI L+ +MQ    KP+  T+  +LS    SG+VD  L 
Sbjct: 386 EKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLR 445

Query: 350 MQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS-WNAMIGGCAS 408
           +  +    K++       + LI + +R G + +A+ +   +KL     + W+A++GGC +
Sbjct: 446 IFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNA 505

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSAC-AHAGLVEEGRQHFKSMVNEYGIEPR 466
           HG   E++    +    +  P      ++LS   A AG  +E  +  +S +N+ G++ +
Sbjct: 506 HG--NESIGDLAARNLLEAEPDNAGTYTLLSNIYASAGKWKEAAK-IRSEMNDRGLKKQ 561


>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/611 (35%), Positives = 353/611 (57%), Gaps = 53/611 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++ Y +   +AKARK+F++MPQR   S+N MI+ Y  S     + EA  LF  M ER+ 
Sbjct: 68  MLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRSN-PMMIGEASKLFAEMRERNS 126

Query: 61  VTW---------------------------------NTVISGYAKTGEMEEALRLFNSMP 87
           +++                                 N +ISGY K G +EEA R+F  M 
Sbjct: 127 ISYAAMITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMG 186

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
            R+V+SW++M+ G+ + G + +A E F+RMP R+  + +A++ G ++ G  +    + ++
Sbjct: 187 ERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLR 246

Query: 148 CGSRCDGGEDLVRAY-NTLIVGY---GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
                   E  V+    TL V +    + G  +E  ++   +          + F+ ++ 
Sbjct: 247 MRK-----EGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLV--------SRMGFEFDVF 293

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPD 263
             N++I+ Y +   VV AR+IF+ M  +D  SWN +I+GY+   ++EE   LF K    D
Sbjct: 294 LGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKD 353

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
            ++W  M++G++  G +  +++ F+ MP+++ ++W ++I+G   N +YE AI  FI+M  
Sbjct: 354 VISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLR 413

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVE 382
           +  +P+  T SS+LS S+G+  L+ G+QIH +V K  +  D+ I N+L++MY +CG + +
Sbjct: 414 KVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVAD 473

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
              IF  +    N+VS+N+MI G A +GF  EALELF  M +    P  ITF+ VLSAC 
Sbjct: 474 GHQIFTSINS-PNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACT 532

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
           H GL+E+G  +FKSM + Y IEP   H+A +VD++GR G L+DA+DLI+ MP EP   VW
Sbjct: 533 HVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVW 592

Query: 503 GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
           GALLGA R+H  +++A++AA+ + K+EP+N+ PY +L  +Y+  GR  D+ +VR+     
Sbjct: 593 GALLGASRIHLRLDVAKLAAQQIFKLEPDNAAPYAVLSFLYSSAGRNRDSEQVRMAQGLK 652

Query: 563 NIKKPTGYSWV 573
            +KK  GYSW+
Sbjct: 653 GVKKSAGYSWI 663



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 197/400 (49%), Gaps = 54/400 (13%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V  ++ I+ + + G+++EA  +F+ MP +N +SW AM++ + +NG +A A + F++MP R
Sbjct: 32  VHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQR 91

Query: 121 DSASLSALVSGLIQNGEL--DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
            +AS +A+++   ++  +   EA+++  +   R         +Y  +I G  + G V+ A
Sbjct: 92  TTASYNAMITAYTRSNPMMIGEASKLFAEMRERNS------ISYAAMITGLARAGMVDNA 145

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT 238
            +L+ + PV            R+ V  N++I  Y K G +  A  IFE M ERD  SW++
Sbjct: 146 EELYLETPVEW----------RDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSS 195

Query: 239 MISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
           M+ GY     +  A  LF +MP  + +TW AM+ G+ ++G  E+    F RM ++  V  
Sbjct: 196 MVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKV 255

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           N                                T + +    S   +   G+Q+H +V++
Sbjct: 256 NPT------------------------------TLTVMFEACSEFGEYKEGIQMHGLVSR 285

Query: 359 TVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
                DV + NA+I MY R   +VEAR IF+ M   K+VVSWNA+I G   +    E   
Sbjct: 286 MGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMN-RKDVVSWNALIAGYVQNDEVEEGYV 344

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           LF+  +   V    I++ ++++  ++ G + +  + F+ M
Sbjct: 345 LFEKTQQKDV----ISWTTMITGFSNKGKMGKSIELFRMM 380



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 179/384 (46%), Gaps = 20/384 (5%)

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246
           +N    +GN R  + +V  +S I  + + GD+  A  IF +M  ++  SW  M++ Y   
Sbjct: 17  LNSSNTQGN-RTTKFLVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYEN 75

Query: 247 LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL--ALDFFKRMPQKNLVSWNSMIAG 304
             + +A  +F KMP   T ++NAM++ Y +   + +  A   F  M ++N +S+ +MI G
Sbjct: 76  GHIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITG 135

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV 364
                  + A +L+++  VE   P     ++++S    +  L    +I + + +    DV
Sbjct: 136 LARAGMVDNAEELYLETPVEWRDPV--CSNALISGYLKVGRLEEATRIFEGMGER---DV 190

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
              ++++  Y + G I  AR +FE M   +NVV+W AMI G    G       LF  MR 
Sbjct: 191 ISWSSMVDGYCKKGKIGHARELFERMP-ERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRK 249

Query: 425 ---FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
               KV PT +T +    AC+  G  +EG Q    +V+  G E  +    +++ +  R  
Sbjct: 250 EGFVKVNPTTLTVM--FEACSEFGEYKEGIQ-MHGLVSRMGFEFDVFLGNAIIIMYCRFS 306

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
            + +A  +   M    D   W AL+     ++ VE   V  E   K + ++   +  +  
Sbjct: 307 FVVEARKIFDMMN-RKDVVSWNALIAGYVQNDEVEEGYVLFE---KTQQKDVISWTTMIT 362

Query: 542 MYADVGRWDDANEV-RLLMKSNNI 564
            +++ G+   + E+ R++ K ++I
Sbjct: 363 GFSNKGKMGKSIELFRMMPKQDDI 386


>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial [Vitis vinifera]
          Length = 744

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/611 (35%), Positives = 353/611 (57%), Gaps = 53/611 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++ Y +   +AKARK+F++MPQR   S+N MI+ Y  S     + EA  LF  M ER+ 
Sbjct: 147 MLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRS-NPMMIGEASKLFAEMRERNS 205

Query: 61  VTW---------------------------------NTVISGYAKTGEMEEALRLFNSMP 87
           +++                                 N +ISGY K G +EEA R+F  M 
Sbjct: 206 ISYAAMITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMG 265

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
            R+V+SW++M+ G+ + G + +A E F+RMP R+  + +A++ G ++ G  +    + ++
Sbjct: 266 ERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLR 325

Query: 148 CGSRCDGGEDLVRAY-NTLIVGY---GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
                   E  V+    TL V +    + G  +E  ++   +          + F+ ++ 
Sbjct: 326 MRK-----EGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLV--------SRMGFEFDVF 372

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPD 263
             N++I+ Y +   VV AR+IF+ M  +D  SWN +I+GY+   ++EE   LF K    D
Sbjct: 373 LGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKD 432

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
            ++W  M++G++  G +  +++ F+ MP+++ ++W ++I+G   N +YE AI  FI+M  
Sbjct: 433 VISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLR 492

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVE 382
           +  +P+  T SS+LS S+G+  L+ G+QIH +V K  +  D+ I N+L++MY +CG + +
Sbjct: 493 KVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVAD 552

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
              IF  +    N+VS+N+MI G A +GF  EALELF  M +    P  ITF+ VLSAC 
Sbjct: 553 GHQIFTSINS-PNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACT 611

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
           H GL+E+G  +FKSM + Y IEP   H+A +VD++GR G L+DA+DLI+ MP EP   VW
Sbjct: 612 HVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVW 671

Query: 503 GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
           GALLGA R+H  +++A++AA+ + K+EP+N+ PY +L  +Y+  GR  D+ +VR+     
Sbjct: 672 GALLGASRIHLRLDVAKLAAQQIFKLEPDNAAPYAVLSFLYSSAGRNRDSEQVRMAQGLK 731

Query: 563 NIKKPTGYSWV 573
            +KK  GYSW+
Sbjct: 732 GVKKSAGYSWI 742



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 197/397 (49%), Gaps = 54/397 (13%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           ++ I+ + + G+++EA  +F+ MP +N +SW AM++ + +NG +A A + F++MP R +A
Sbjct: 114 HSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTA 173

Query: 124 SLSALVSGLIQNGEL--DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           S +A+++   ++  +   EA+++  +   R         +Y  +I G  + G V+ A +L
Sbjct: 174 SYNAMITAYTRSNPMMIGEASKLFAEMRERNS------ISYAAMITGLARAGMVDNAEEL 227

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           + + PV            R+ V  N++I  Y K G +  A  IFE M ERD  SW++M+ 
Sbjct: 228 YLETPVEW----------RDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVD 277

Query: 242 GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           GY     +  A  LF +MP  + +TW AM+ G+ ++G  E+    F RM ++  V     
Sbjct: 278 GYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFV----- 332

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
                                    K +  T + +    S   +   G+Q+H +V++   
Sbjct: 333 -------------------------KVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGF 367

Query: 362 P-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
             DV + NA+I MY R   +VEAR IF+ M   K+VVSWNA+I G   +    E   LF+
Sbjct: 368 EFDVFLGNAIIIMYCRFSFVVEARKIFDMMN-RKDVVSWNALIAGYVQNDEVEEGYVLFE 426

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
             +   V    I++ ++++  ++ G + +  + F+ M
Sbjct: 427 KTQQKDV----ISWTTMITGFSNKGKMGKSIELFRMM 459



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 179/384 (46%), Gaps = 20/384 (5%)

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246
           +N    +GN R  + +V  +S I  + + GD+  A  IF +M  ++  SW  M++ Y   
Sbjct: 96  LNSSNTQGN-RTTKFLVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYEN 154

Query: 247 LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL--ALDFFKRMPQKNLVSWNSMIAG 304
             + +A  +F KMP   T ++NAM++ Y +   + +  A   F  M ++N +S+ +MI G
Sbjct: 155 GHIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITG 214

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV 364
                  + A +L+++  VE   P     ++++S    +  L    +I + + +    DV
Sbjct: 215 LARAGMVDNAEELYLETPVEWRDPV--CSNALISGYLKVGRLEEATRIFEGMGER---DV 269

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
              ++++  Y + G I  AR +FE M   +NVV+W AMI G    G       LF  MR 
Sbjct: 270 ISWSSMVDGYCKKGKIGHARELFERMP-ERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRK 328

Query: 425 ---FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
               KV PT +T +    AC+  G  +EG Q    +V+  G E  +    +++ +  R  
Sbjct: 329 EGFVKVNPTTLTVM--FEACSEFGEYKEGIQ-MHGLVSRMGFEFDVFLGNAIIIMYCRFS 385

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
            + +A  +   M    D   W AL+     ++ VE   V  E   K + ++   +  +  
Sbjct: 386 FVVEARKIFDMMN-RKDVVSWNALIAGYVQNDEVEEGYVLFE---KTQQKDVISWTTMIT 441

Query: 542 MYADVGRWDDANEV-RLLMKSNNI 564
            +++ G+   + E+ R++ K ++I
Sbjct: 442 GFSNKGKMGKSIELFRMMPKQDDI 465


>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
 gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
 gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
 gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
 gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
          Length = 622

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/570 (38%), Positives = 323/570 (56%), Gaps = 58/570 (10%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--RDCVTWNTVIS 68
           ++ AR+LFD MP RDVVSW  M++ Y      G L+EAR LFD  P+  R+ VTW  ++S
Sbjct: 57  VSDARRLFDGMPDRDVVSWTAMVAAYARR---GMLQEARVLFD-RPDARRNVVTWTALLS 112

Query: 69  GYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSAL 128
           GYA+   ++EA  LF  M  RNVVSWN M+  +   G V +A   F+RMP RD+ S + L
Sbjct: 113 GYARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGSWNIL 172

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
           + GL+++                                     G +E ARK+F+++PV 
Sbjct: 173 LCGLVRS-------------------------------------GSLERARKMFERMPV- 194

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                      R+++SW +MI   A+ G V  A  +F+ M ER+  SWN MISGY     
Sbjct: 195 -----------RDVMSWTTMISGLARNGSVDDAWVLFDAMPERNVVSWNAMISGYARNHR 243

Query: 249 MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           +EEA +LF KMP  D  +WN M++G+ Q  +L+ A   F  MP++N+++W +M+ G    
Sbjct: 244 IEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNGYLQC 303

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPIN 367
              E A+KLF  M V+G +P++ TF   L   S +  L  G Q+HQM+ KT    D  + 
Sbjct: 304 MQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVE 363

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           + L+ +YA+CG I  AR +F +  + K+++SWN +I   A HGF  EA+ L+K+M+    
Sbjct: 364 STLMNLYAKCGEIRLARNVF-DFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGY 422

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
            P   T++ +LSAC+HAGLV+EG + F+SMV +  I  R EH+  LVD+  R GRLEDA 
Sbjct: 423 KPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCSRAGRLEDAK 482

Query: 488 DLIKGMPFEPDKA-VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
            LI     +P  + VW ALLG C  H N  +  +AA+ L++ EP+N+  Y LL N+YA  
Sbjct: 483 RLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEAEPDNAGTYTLLCNIYASA 542

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           G+W +A E+R  M    +KK  G SW++ +
Sbjct: 543 GKWKEAAEIRSEMNVRGLKKQPGCSWIEVA 572



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/423 (30%), Positives = 225/423 (53%), Gaps = 36/423 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++SGY + R + +A  LF+ M +R+VVSWN M+  Y +    G +E+A  LF+ MP RD 
Sbjct: 110 LLSGYARARRVDEAEALFEGMAERNVVSWNTMLEAYTA---VGRVEDASALFNRMPVRDA 166

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN ++ G  ++G +E A ++F  MP R+V+SW  MISG  +NG V +A   FD MP R
Sbjct: 167 GSWNILLCGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPER 226

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++SG  +N  ++EA  +  K   R       V ++N +I G+ Q   ++ AR+
Sbjct: 227 NVVSWNAMISGYARNHRIEEALDLFTKMPIR------DVASWNIMITGFIQNKDLKSARQ 280

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML------ERDTF 234
           LFD++P            KRN+++W +M+  Y +      A ++F  ML       + TF
Sbjct: 281 LFDEMP------------KRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTF 328

Query: 235 SWN-TMISGYIHVLDMEEASNLFVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
             +    S    + + ++   +  K P   DT   + +++ YA+ G + LA + F    +
Sbjct: 329 LGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSME 388

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGM 350
           K+L+SWN +IA    +     A+ L+  MQ  G KP+  T+  +LS  S  G+VD   G+
Sbjct: 389 KDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVD--EGL 446

Query: 351 QIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS-WNAMIGGCA 407
           +I + + K  +++        L+ + +R G + +A+ +    K+     + W+A++GGC 
Sbjct: 447 KIFESMVKDNSIVVRDEHYTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCN 506

Query: 408 SHG 410
           SHG
Sbjct: 507 SHG 509



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 184/410 (44%), Gaps = 73/410 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISG  +   +  A  LFD MP+R+VVSWN MISGY  +     +EEA  LF  MP RD 
Sbjct: 203 MISGLARNGSVDDAWVLFDAMPERNVVSWNAMISGYARNHR---IEEALDLFTKMPIRDV 259

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN +I+G+ +  +++ A +LF+ MP RNV++W  M++G+LQ      A++ F+ M   
Sbjct: 260 ASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCM--- 316

Query: 121 DSASLSALVSGLIQN-----GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
                  LV G+  N     G LD  + +     + C+G                     
Sbjct: 317 -------LVQGIQPNQVTFLGSLDACSNL----AALCEG--------------------- 344

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
           ++  ++  K P   D               ++++  YAK G++  AR +F+  +E+D  S
Sbjct: 345 QQVHQMICKTPSQFD-----------TFVESTLMNLYAKCGEIRLARNVFDFSMEKDLIS 393

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           WN +I+ Y H     EA +L+  M      P+  T+  ++S  +  G ++  L  F+ M 
Sbjct: 394 WNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMV 453

Query: 292 QKNLV-----SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           + N +      +  ++  C      E A +L    ++   KP   T S++ S   G  + 
Sbjct: 454 KDNSIVVRDEHYTCLVDLCSRAGRLEDAKRLISWFKI---KP---TSSTVWSALLGGCNS 507

Query: 347 HLGMQIHQMVTKTVIPDVPINNALITM----YARCGAIVEARIIFEEMKL 392
           H    I  +  K ++   P N    T+    YA  G   EA  I  EM +
Sbjct: 508 HGNESIGDLAAKHLLEAEPDNAGTYTLLCNIYASAGKWKEAAEIRSEMNV 557


>gi|449433223|ref|XP_004134397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
 gi|449487596|ref|XP_004157705.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 675

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/610 (35%), Positives = 351/610 (57%), Gaps = 51/610 (8%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY-ISSRGS------------------ 42
           IS  ++   + +A+KLFD MPQR++V+WN MI GY ++ R S                  
Sbjct: 53  ISNCMRNGLVEQAQKLFDGMPQRNIVTWNAMIRGYFLNGRCSDGISLFRRMPERDVFSYN 112

Query: 43  ---------GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS 93
                    G ++ A+ +FD+MP RD V+WN++I+G  + G +EEA++LF+ MP +NV+S
Sbjct: 113 TVIGGLMQCGDVDGAKDIFDLMPFRDVVSWNSMIAGCIRNGLLEEAIQLFDGMPLKNVIS 172

Query: 94  WNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCD 153
           WN +I G +  G + +A E+F +M  RD  S + ++SGL + G LDEA  +     ++  
Sbjct: 173 WNLIIGGLVNCGKLDSAGEYFGKMSRRDLVSWTIMISGLCRAGRLDEARGLFNNMPTK-- 230

Query: 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
                 R +N ++VGY + G++E A +LF  +P            +RN  SWN ++  + 
Sbjct: 231 ----DARVWNAMMVGYIENGKIEMAEELFGIMP------------ERNFGSWNKLVNGFV 274

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
            +  V  AR++F +M ++   +WN ++  YI    + +   L  K+P+ +  +W  ++ G
Sbjct: 275 GSQRVDDARKLFMEMPDKCQKTWNNIVLAYIRNGLVLQTHALLEKIPYGNIASWTNLIVG 334

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           Y  IG + +A++ F+ M  K+   WN+ I G   N   E  +KLF +M   G   D+ TF
Sbjct: 335 YFGIGEVGMAVEIFESMQYKDTTVWNATIFGLGENDKGEEGLKLFTRMIRLGPCLDKATF 394

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKL 392
           +SIL++ S +  L LG Q H ++ K      V ++NA+I MYARCG +  A + F  M  
Sbjct: 395 TSILTICSDLETLQLGRQTHALILKEGFNGFVAVSNAMINMYARCGNMDCAFMEFSSMSD 454

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
            ++V+SWN+MI G A HG   +ALE+F+ MR   + P +ITFI VLSAC+H GL+++GR 
Sbjct: 455 -RDVISWNSMICGFAHHGNGEDALEMFEKMRLANIEPNHITFIGVLSACSHKGLIDKGRY 513

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI---KGMPFEPDKAVWGALLGAC 509
           +F  M NE  + P IEH+  LVD+ GR G +++A+  +   K    E   +VWGALLGAC
Sbjct: 514 YFNFMKNECSLRPLIEHYTCLVDLFGRFGLIDEALSFLAEMKAEEIEVPPSVWGALLGAC 573

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
           R+H N ++  +A E +++ EP N+  Y++L  MY   G+ ++A ++   MK+N +KK  G
Sbjct: 574 RIHKNYDVGVIAGEKVLEKEPHNAGVYLILAEMYLRNGKRENAEKIFARMKNNGVKKQPG 633

Query: 570 YSWVDFSPCG 579
            SW++ + CG
Sbjct: 634 CSWIEVNNCG 643



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 166/548 (30%), Positives = 265/548 (48%), Gaps = 79/548 (14%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N+ IS   + G +E+A +LF+ MP RN+V+WNAMI G+  NG  ++ I  F RMP RD  
Sbjct: 50  NSEISNCMRNGLVEQAQKLFDGMPQRNIVTWNAMIRGYFLNGRCSDGISLFRRMPERDVF 109

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S + ++ GL+Q G++D A  +      R     D+V ++N++I G  + G +EEA +LFD
Sbjct: 110 SYNTVIGGLMQCGDVDGAKDIFDLMPFR-----DVV-SWNSMIAGCIRNGLLEEAIQLFD 163

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
            +P+            +N++SWN +I      G + SA E F +M  RD  SW  MISG 
Sbjct: 164 GMPL------------KNVISWNLIIGGLVNCGKLDSAGEYFGKMSRRDLVSWTIMISGL 211

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                ++EA  LF  MP  D   WNAM+ GY + G +E+A + F  MP++N  SWN ++ 
Sbjct: 212 CRAGRLDEARGLFNNMPTKDARVWNAMMVGYIENGKIEMAEELFGIMPERNFGSWNKLVN 271

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL--SMSSGIVDLHLGMQIHQMVTKTVI 361
           G   ++  + A KLF++M  + +K    T+++I+   + +G+V     +Q H ++ K   
Sbjct: 272 GFVGSQRVDDARKLFMEMPDKCQK----TWNNIVLAYIRNGLV-----LQTHALLEKIPY 322

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
            ++     LI  Y   G +  A  IFE M+  K+   WNA I G   +    E L+LF  
Sbjct: 323 GNIASWTNLIVGYFGIGEVGMAVEIFESMQ-YKDTTVWNATIFGLGENDKGEEGLKLFTR 381

Query: 422 MRSFKVLPTYITFISVLSACA-----------HAGLVEEGRQHF----KSMVNEYG---- 462
           M          TF S+L+ C+           HA +++EG   F     +M+N Y     
Sbjct: 382 MIRLGPCLDKATFTSILTICSDLETLQLGRQTHALILKEGFNGFVAVSNAMINMYARCGN 441

Query: 463 IEPRIEHFASLVD---------IVG--RHGRLEDAMDLIKGMPF---EPDKAVWGALLGA 508
           ++     F+S+ D         I G   HG  EDA+++ + M     EP+   +  +L A
Sbjct: 442 MDCAFMEFSSMSDRDVISWNSMICGFAHHGNGEDALEMFEKMRLANIEPNHITFIGVLSA 501

Query: 509 C---------RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
           C         R + N    + +   L++        Y  L +++   G  D+A      M
Sbjct: 502 CSHKGLIDKGRYYFNFMKNECSLRPLIE-------HYTCLVDLFGRFGLIDEALSFLAEM 554

Query: 560 KSNNIKKP 567
           K+  I+ P
Sbjct: 555 KAEEIEVP 562



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 111/222 (50%), Gaps = 8/222 (3%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           N+   NS I    + G V  A+++F+ M +R+  +WN MI GY       +  +LF +MP
Sbjct: 45  NLKLLNSEISNCMRNGLVEQAQKLFDGMPQRNIVTWNAMIRGYFLNGRCSDGISLFRRMP 104

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             D  ++N ++ G  Q G+++ A D F  MP +++VSWNSMIAGC  N   E AI+LF  
Sbjct: 105 ERDVFSYNTVIGGLMQCGDVDGAKDIFDLMPFRDVVSWNSMIAGCIRNGLLEEAIQLFDG 164

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAI 380
           M      P ++  S  L +  G+V+        +   K    D+     +I+   R G +
Sbjct: 165 M------PLKNVISWNL-IIGGLVNCGKLDSAGEYFGKMSRRDLVSWTIMISGLCRAGRL 217

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
            EAR +F  M   K+   WNAM+ G   +G    A ELF  M
Sbjct: 218 DEARGLFNNMP-TKDARVWNAMMVGYIENGKIEMAEELFGIM 258



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 129/299 (43%), Gaps = 54/299 (18%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           P+    N+ +S   + G +E A   F  MPQ+N+V+WN+MI G   N      I LF +M
Sbjct: 44  PNLKLLNSEISNCMRNGLVEQAQKLFDGMPQRNIVTWNAMIRGYFLNGRCSDGISLFRRM 103

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIV 381
                 P+R  FS                                 N +I    +CG + 
Sbjct: 104 ------PERDVFSY--------------------------------NTVIGGLMQCGDVD 125

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
            A+ IF+ M   ++VVSWN+MI GC  +G   EA++LF  M     L   I++  ++   
Sbjct: 126 GAKDIFDLMP-FRDVVSWNSMIAGCIRNGLLEEAIQLFDGMP----LKNVISWNLIIGGL 180

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
            + G ++   ++F  M         +  +  ++  + R GRL++A  L   MP   D  V
Sbjct: 181 VNCGKLDSAGEYFGKMSRR-----DLVSWTIMISGLCRAGRLDEARGLFNNMP-TKDARV 234

Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPE-NSTPYVLLYNMYADVGRWDDANEVRLLM 559
           W A++     +  +E+    AE L  + PE N   +  L N +    R DDA ++ + M
Sbjct: 235 WNAMMVGYIENGKIEM----AEELFGIMPERNFGSWNKLVNGFVGSQRVDDARKLFMEM 289


>gi|147859671|emb|CAN83112.1| hypothetical protein VITISV_026574 [Vitis vinifera]
          Length = 833

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/602 (35%), Positives = 342/602 (56%), Gaps = 69/602 (11%)

Query: 13  KARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAK 72
           +A+ LFDEMPQR+ V++N MI GY  +   G   E   LFD MPERD  ++NT+I+G  K
Sbjct: 213 EAQMLFDEMPQRNTVTYNAMIRGYFQN---GHFGEGVSLFDEMPERDIFSYNTMIAGLMK 269

Query: 73  TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGL 132
            G++  A  +F  MP R+VVSWN+MISG++ NG +  A+  F  M  +D  S + +++GL
Sbjct: 270 FGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGMVLKDVVSWNLVIAGL 329

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           +  G++D A     + G+R       + ++ T+I G    GR+ EAR LF+ +PV     
Sbjct: 330 VGVGKVDLAEEFFKEMGTRD------IASWTTMISGLASAGRIVEARGLFEDMPV----- 378

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
                  R++ +WN+MI  Y + G +     +F++M +RD  SWN MI+G +    ++ A
Sbjct: 379 -------RDVRAWNTMIAGYLENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQNA 431

Query: 253 SNLFVKMPH-------------------------------PDTLTWNAMVSGYAQIGNLE 281
             LFV+MP                                 DT++W  ++ GY + G ++
Sbjct: 432 MRLFVEMPQKCRRSWNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEVD 491

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A+  F+ MP ++  +WN +I G   N   E  +K F++M+  G  PD  TF+S+L++ S
Sbjct: 492 TAVSIFELMPARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTICS 551

Query: 342 GIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +  LHLG QIH  VTKT     V ++NA++T+YARCG    A ++F  M    +V+SWN
Sbjct: 552 DLPTLHLGRQIHAQVTKTGFNYFVAVSNAMVTLYARCGNSNSALLLFSSMT-SHDVISWN 610

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           ++I G A +G   EA+E+F+ MRS  + P  ITF+ VLSAC+HAGLV++G+ +F  M  +
Sbjct: 611 SIICGLAHNGNGVEAIEMFEKMRSTDIKPNRITFVGVLSACSHAGLVDQGKYYFDFMKYK 670

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP---FEPDKAVWGALLGACRVHNNVEL 517
             +EP IEH+  +VD++GR G +++AM  ++ M     E   +VWGA+LGACR+H N+++
Sbjct: 671 CCLEPTIEHYTCIVDLLGRFGLIDEAMSFLRQMEANGVEVPASVWGAVLGACRIHKNIQV 730

Query: 518 AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFSP 577
            ++A E ++++EP N              G+ +DA  V + M+   +KK    SW++ + 
Sbjct: 731 GEIAGERILEIEPHNF------------CGKREDAERVWVRMREKGVKKQPACSWMEVNG 778

Query: 578 CG 579
            G
Sbjct: 779 SG 780



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 151/506 (29%), Positives = 240/506 (47%), Gaps = 29/506 (5%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N+ IS   + G  EEA  LF+ MP RN V++NAMI G+ QNG     +  FD MP RD  
Sbjct: 199 NSRISDCMRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMPERDIF 258

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S + +++GL++ G+++ A+ +  K   R     D+V ++N++I GY   G + EA ++F 
Sbjct: 259 SYNTMIAGLMKFGDINGASEIFQKMPFR-----DVV-SWNSMISGYVSNGLIGEALRVFS 312

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
            + +            +++VSWN +I      G V  A E F++M  RD  SW TMISG 
Sbjct: 313 GMVL------------KDVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGL 360

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                + EA  LF  MP  D   WN M++GY + G +E+    F++MPQ++  SWN MI 
Sbjct: 361 ASAGRIVEARGLFEDMPVRDVRAWNTMIAGYLENGCIEIGEVLFQKMPQRDFRSWNEMIN 420

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363
           G   N+  + A++LF++M     +  R +++SI+    G++   L  + H  + K+   D
Sbjct: 421 GLVRNQRIQNAMRLFVEM----PQKCRRSWNSIV---FGLIRNGLIKEAHAFLEKSPFSD 473

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
                 LI  Y   G +  A  IFE M   ++  +WN +I G   +    E L+ F  M+
Sbjct: 474 TVSWTNLIVGYFETGEVDTAVSIFELMP-ARDATAWNVIIWGLGENDHGEEGLKFFVKMK 532

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
                P   TF SVL+ C+    +  GRQ   + V + G    +    ++V +  R G  
Sbjct: 533 EGGPFPDEATFTSVLTICSDLPTLHLGRQ-IHAQVTKTGFNYFVAVSNAMVTLYARCGNS 591

Query: 484 EDAMDLIKGMPFEPDKAVWGALL-GACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
             A+ L   M    D   W +++ G     N VE  ++  +        N   +V + + 
Sbjct: 592 NSALLLFSSMT-SHDVISWNSIICGLAHNGNGVEAIEMFEKMRSTDIKPNRITFVGVLSA 650

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPT 568
            +  G  D        MK     +PT
Sbjct: 651 CSHAGLVDQGKYYFDFMKYKCCLEPT 676



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 156/310 (50%), Gaps = 26/310 (8%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           N+   NS I    + G    A+ +F++M +R+T ++N MI GY       E  +LF +MP
Sbjct: 194 NLKPLNSRISDCMRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMP 253

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             D  ++N M++G  + G++  A + F++MP +++VSWNSMI+G  +N     A+++F  
Sbjct: 254 ERDIFSYNTMIAGLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSG 313

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ-IHQMVTKTVIPDVPINNALITMYARCGA 379
           M ++    D  +++ +++   G+  + L  +   +M T+    D+     +I+  A  G 
Sbjct: 314 MVLK----DVVSWNLVIAGLVGVGKVDLAEEFFKEMGTR----DIASWTTMISGLASAGR 365

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM--RSFKVLPTYITFISV 437
           IVEAR +FE+M  +++V +WN MI G   +G       LF+ M  R F+     I     
Sbjct: 366 IVEARGLFEDMP-VRDVRAWNTMIAGYLENGCIEIGEVLFQKMPQRDFRSWNEMIN---- 420

Query: 438 LSACAHAGLVEEGR-QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
                  GLV   R Q+   +  E   + R   + S+V  + R+G +++A   ++  PF 
Sbjct: 421 -------GLVRNQRIQNAMRLFVEMPQKCR-RSWNSIVFGLIRNGLIKEAHAFLEKSPFS 472

Query: 497 PDKAVWGALL 506
            D   W  L+
Sbjct: 473 -DTVSWTNLI 481


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/568 (37%), Positives = 345/568 (60%), Gaps = 25/568 (4%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGY 70
           M  AR  F+ MP R   S+N +++GY  +      + A  +F  MP RD  ++N +ISG 
Sbjct: 33  MEGARATFEAMPLRTTASYNALLAGYFRNH---LPDAALRVFHRMPTRDLASYNALISGL 89

Query: 71  A-KTGEMEEALRLFNSMP-ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSAL 128
           + +   + +A     ++P   +VVS+ +++ G++++G +A+AI+ F +MP R+  S + L
Sbjct: 90  SLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFRQMPERNHISYTVL 149

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
           + G +  G +DEA ++  +  ++     D+V A+  ++ GY Q GRV+EAR LFD++P  
Sbjct: 150 LGGFLDAGRVDEARKLFDEMPAK-----DVV-AWTAMLSGYCQVGRVDEARTLFDEMP-- 201

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                     KRN+VSW +M+  YA+ G V  AR++FE M ER+  SW  M+ GYI    
Sbjct: 202 ----------KRNVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAGR 251

Query: 249 MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           +E+A  LF  MP       N M+ G+ Q G ++ A   F RM +++  +W+++I   E N
Sbjct: 252 IEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQN 311

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPIN 367
           +    A+  F +M   G +P+  +  SIL++ + +  L  G ++H  M+ ++   D+   
Sbjct: 312 EFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAV 371

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           +ALITMY +CG + +A+ +F  M   K+VV WN+MI G A HG   EAL +F  MR   +
Sbjct: 372 SALITMYIKCGNLDKAKRVFH-MFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGM 430

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
           +P  IT+I  L+AC++ G V+EGR  F SM  + GI+P +EH+A +VD++GR G +++A+
Sbjct: 431 VPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEAL 490

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
            LIK MP EPD  +WGAL+GACR+H N E+A+++A+ L+++EP N+ PYVLL ++Y   G
Sbjct: 491 YLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLELEPGNAGPYVLLSHIYTSSG 550

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           RW+DA+ +R  + S ++ K  G SW+++
Sbjct: 551 RWEDASNMRKFISSRHLNKSLGCSWIEY 578



 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 133/419 (31%), Positives = 225/419 (53%), Gaps = 31/419 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++ GYV+   +A A +LF +MP+R+ +S+ V++ G++    +G ++EAR LFD MP +D 
Sbjct: 118 LLRGYVRHGLLADAIQLFRQMPERNHISYTVLLGGFLD---AGRVDEARKLFDEMPAKDV 174

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V W  ++SGY + G ++EA  LF+ MP RNVVSW AM+SG+ QNG V  A + F+ MP R
Sbjct: 175 VAWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPER 234

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++ G IQ G +++A  +           +  + A N +IVG+GQ+G V+ A+ 
Sbjct: 235 NEVSWTAMLFGYIQAGRIEDAEELFNAM------PDHPLAACNGMIVGFGQQGMVDAAKS 288

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-SWNTM 239
           +FD++   C+R +G         +W+++I  Y +   ++ A   F +ML      ++ ++
Sbjct: 289 VFDRM---CERDDG---------TWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSV 336

Query: 240 IS-----GYIHVLDM--EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           IS       + VLD   E    +  +    D    +A+++ Y + GNL+ A   F     
Sbjct: 337 ISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEP 396

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K++V WNSMI G   +   E A+ +F  M++ G  PD  T+   L+  S    +  G  I
Sbjct: 397 KDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDI 456

Query: 353 -HQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            + M TK+ I P +     ++ +  R G + EA  + + M +  + V W A++G C  H
Sbjct: 457 FNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRMH 515



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 151/311 (48%), Gaps = 24/311 (7%)

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           +V  N+ I   A+ G++  AR  FE M  R T S+N +++GY      + A  +F +MP 
Sbjct: 17  VVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPT 76

Query: 262 PDTLTWNAMVSGYA-QIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFI 319
            D  ++NA++SG + +   L  A      +P   ++VS+ S++ G   +     AI+LF 
Sbjct: 77  RDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFR 136

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGA 379
           QM      P+R+  S  + +  G +D     +  ++  +    DV    A+++ Y + G 
Sbjct: 137 QM------PERNHISYTV-LLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVGR 189

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP--TYITFISV 437
           + EAR +F+EM   +NVVSW AM+ G A +G    A +L      F+V+P    +++ ++
Sbjct: 190 VDEARTLFDEMP-KRNVVSWTAMVSGYAQNGQVNLARKL------FEVMPERNEVSWTAM 242

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           L     AG +E+  + F +M +       +     ++   G+ G ++ A  +   M  E 
Sbjct: 243 LFGYIQAGRIEDAEELFNAMPDH-----PLAACNGMIVGFGQQGMVDAAKSVFDRM-CER 296

Query: 498 DKAVWGALLGA 508
           D   W A++ A
Sbjct: 297 DDGTWSAIIKA 307



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 117/272 (43%), Gaps = 36/272 (13%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           P  +  NA ++  A+ GN+E A   F+ MP +   S+N+++AG   N   + A+++F +M
Sbjct: 15  PAVVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRM 74

Query: 322 Q----------VEGEKPDRHTFSSILSMSSGI---------VDLHLGMQIHQMVTKTV-- 360
                      + G    RHT     +  + I           L  G   H ++   +  
Sbjct: 75  PTRDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQL 134

Query: 361 IPDVPINN-----ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
              +P  N      L+  +   G + EAR +F+EM   K+VV+W AM+ G    G   EA
Sbjct: 135 FRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMP-AKDVVAWTAMLSGYCQVGRVDEA 193

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
             LF  M    V    +++ +++S  A  G V   R+ F+ M     +      F  +  
Sbjct: 194 RTLFDEMPKRNV----VSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYI-- 247

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
              + GR+EDA +L   MP  P  A  G ++G
Sbjct: 248 ---QAGRIEDAEELFNAMPDHPLAACNGMIVG 276


>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 656

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/575 (38%), Positives = 336/575 (58%), Gaps = 27/575 (4%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           IS    R ++ +ARK+FDEMP+RD VS+  MI+ Y+ ++    L +A  LF  +PER+ V
Sbjct: 58  ISNLGLRGKVKEARKVFDEMPRRDAVSYASMITVYLKNKD---LPQAEILFREIPERNVV 114

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
             + +ISGY + G +++A ++F+ M  RNV SW +++SG+ + G+V  A+  F++MP ++
Sbjct: 115 ADSAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKN 174

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S +  V G  QNG +DEA  +  +        E  + A+  ++  Y +   ++EA +L
Sbjct: 175 VVSWTTAVVGYAQNGFIDEARDIFNQMP------EKNIIAWTAMVKSYVENDEIDEAFEL 228

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           F ++P            +RN+ SWN MI     A  +  A ++F  M +R+  SW T+++
Sbjct: 229 FYQMP------------QRNLYSWNIMISGCINANRLNEAIQLFNSMPQRNEVSWTTLVT 276

Query: 242 GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           G      ME A   F  MP  D   WNAM++ Y   G++  A + F  MP+KN+VSWN++
Sbjct: 277 GLARNGMMELARKYFDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNAL 336

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
           I G   N     +++  I M     KP+  T +S+L+    I++L   MQ H +V     
Sbjct: 337 IDGYARNGPESNSLRYLILMLRSNFKPNETTITSVLTACDSILEL---MQAHGLVIHLGF 393

Query: 362 -PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
             D  + N L+T Y+RCG ++ AR IF+++++ K++VSW AMI   ++HG    AL++F 
Sbjct: 394 EQDKVLANGLVTTYSRCGDVLSARFIFDQLEI-KDIVSWTAMILAYSNHGCGPHALQVFA 452

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M      P  ITF+ +LSAC+HAGLV++G+  F SM   YG+EPR EH++ LVDI+GR 
Sbjct: 453 RMLRSGAKPDGITFVGLLSACSHAGLVKKGQMLFDSMSCAYGVEPRAEHYSCLVDILGRA 512

Query: 481 GRLEDAMDLIKGM-PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
           G +  AM ++  M P E D AV GALLGACR+H +V LA    E L++ EP +S  YVLL
Sbjct: 513 GEMNKAMKVVSEMPPHECDGAVLGALLGACRLHKDVGLANHIGEKLIEKEPTSSGSYVLL 572

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N YA  G+W++  EVR  MK  N+KK  G+S ++
Sbjct: 573 ANAYAACGKWNEFAEVRKEMKERNVKKEPGFSQIE 607



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 139/501 (27%), Positives = 237/501 (47%), Gaps = 72/501 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGYV+   + KAR++FD+M +R+V SW  ++SGY      G ++EA  LF+ MPE++ 
Sbjct: 119 MISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFK---IGNVDEAMRLFNQMPEKNV 175

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W T + GYA+ G ++EA  +FN MP +N+++W AM+  +++N ++  A E F +MP R
Sbjct: 176 VSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQR 235

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S + ++SG I    L+EA ++      R +       ++ TL+ G  + G +E ARK
Sbjct: 236 NLYSWNIMISGCINANRLNEAIQLFNSMPQRNE------VSWTTLVTGLARNGMMELARK 289

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            FD +P             ++I +WN+MI  Y   G +  A  +F  M E++  SWN +I
Sbjct: 290 YFDHMPT------------KDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALI 337

Query: 241 SGYIH-----------------------------------VLDMEEASNLFVKMP-HPDT 264
            GY                                     +L++ +A  L + +    D 
Sbjct: 338 DGYARNGPESNSLRYLILMLRSNFKPNETTITSVLTACDSILELMQAHGLVIHLGFEQDK 397

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
           +  N +V+ Y++ G++  A   F ++  K++VSW +MI     +     A+++F +M   
Sbjct: 398 VLANGLVTTYSRCGDVLSARFIFDQLEIKDIVSWTAMILAYSNHGCGPHALQVFARMLRS 457

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVE 382
           G KPD  TF  +LS  S    +  G  +   ++    V P     + L+ +  R G + +
Sbjct: 458 GAKPDGITFVGLLSACSHAGLVKKGQMLFDSMSCAYGVEPRAEHYSCLVDILGRAGEMNK 517

Query: 383 ARIIFEEMKLLK-NVVSWNAMIGGCASH---GFATEALELFKSMRSFKVLPT----YITF 434
           A  +  EM   + +     A++G C  H   G A    E     +  +  PT    Y+  
Sbjct: 518 AMKVVSEMPPHECDGAVLGALLGACRLHKDVGLANHIGE-----KLIEKEPTSSGSYVLL 572

Query: 435 ISVLSACAHAGLVEEGRQHFK 455
            +  +AC       E R+  K
Sbjct: 573 ANAYAACGKWNEFAEVRKEMK 593



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 174/354 (49%), Gaps = 64/354 (18%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIP---------------VNCDRGEGNVRFK----RNIV 203
           N  I   G RG+V+EARK+FD++P                N D  +  + F+    RN+V
Sbjct: 55  NVKISNLGLRGKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNVV 114

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPD 263
           + ++MI  Y +AG +  AR++F+QM+ER+ FSW +++SGY  + +++EA  LF +MP  +
Sbjct: 115 ADSAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKN 174

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
            ++W   V GYAQ G ++ A D F +MP+KN+++W +M+     N + + A +LF QM  
Sbjct: 175 VVSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQM-- 232

Query: 324 EGEKPDRHTFSSILSMSSGI--------VDLHLGMQIHQMVTKTVI-------------- 361
               P R+ +S  + +S  I        + L   M     V+ T +              
Sbjct: 233 ----PQRNLYSWNIMISGCINANRLNEAIQLFNSMPQRNEVSWTTLVTGLARNGMMELAR 288

Query: 362 --------PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
                    D+   NA+IT Y   G++ EA  +F  M   KN+VSWNA+I G A +G  +
Sbjct: 289 KYFDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMP-EKNIVSWNALIDGYARNGPES 347

Query: 414 EALELFKSMRSFKVLPTYITFISVLSAC--------AHAGLVEEGRQHFKSMVN 459
            +L     M      P   T  SVL+AC        AH  ++  G +  K + N
Sbjct: 348 NSLRYLILMLRSNFKPNETTITSVLTACDSILELMQAHGLVIHLGFEQDKVLAN 401



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 149/352 (42%), Gaps = 52/352 (14%)

Query: 247 LDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
           L     S +  ++P P    DT   N  +S     G ++ A   F  MP+++ VS+ SMI
Sbjct: 30  LKTPNPSKITTRIPFPVFASDTYESNVKISNLGLRGKVKEARKVFDEMPRRDAVSYASMI 89

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP 362
                NKD   A  LF       E P+R+  +   +M SG V      +  Q+  + V  
Sbjct: 90  TVYLKNKDLPQAEILF------REIPERNVVADS-AMISGYVRAGRLDKARQVFDQMVER 142

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           +V    +L++ Y + G + EA  +F +M   KNVVSW   + G A +GF  EA ++F  M
Sbjct: 143 NVFSWTSLVSGYFKIGNVDEAMRLFNQMP-EKNVVSWTTAVVGYAQNGFIDEARDIFNQM 201

Query: 423 RSFKVLP------TYI---------------------TFISVLSACAHAGLVEEGRQHFK 455
               ++       +Y+                     ++  ++S C +A  + E  Q F 
Sbjct: 202 PEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQRNLYSWNIMISGCINANRLNEAIQLFN 261

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
           SM     +      + +LV  + R+G +E A      MP + D A W A++ A      V
Sbjct: 262 SMPQRNEVS-----WTTLVTGLARNGMMELARKYFDHMPTK-DIAAWNAMITAY-----V 310

Query: 516 ELAQVA-AEALMKVEPE-NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           +   +A A  L  + PE N   +  L + YA  G   ++    +LM  +N K
Sbjct: 311 DQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYLILMLRSNFK 362


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/574 (35%), Positives = 323/574 (56%), Gaps = 69/574 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+ GY     +  A   F  +P+ D  S+N ++     S     L +AR LFD MP +D 
Sbjct: 72  MLGGYAANGRLTLALSFFRSIPRPDSFSYNTLLHALGVSSS---LADARALFDEMPVKDS 128

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V++N +IS +A  G +  A   F+  P ++ VSWN M++ +++NG +  A + FD     
Sbjct: 129 VSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYIRNGRIQEARDLFDSRTEW 188

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D+ S +AL++G +Q  +++EA ++  +   R     D+V ++NT++ G+ +RG + EAR+
Sbjct: 189 DAISWNALMAGYVQCSQIEEAQKMFNRMPQR-----DVV-SWNTMVSGHARRGDMAEARR 242

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD  P+            R++ +W +++  YA+ G +  A+ +F+ M E++  SWN M+
Sbjct: 243 LFDVAPI------------RDVFTWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMM 290

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           + Y+    MEEA  LF  MP  +  +WN M++GYAQ G L+ A   F  MPQK+ VSW +
Sbjct: 291 AAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFDMMPQKDAVSWAA 350

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           M+A        E  ++LF +M                                       
Sbjct: 351 MLAAYSQGGFSEETLQLFKEM--------------------------------------- 371

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
                       MY +CG + EA   FEEM+  +++VSWN MI G A HGF  EALE+F 
Sbjct: 372 --------GRCAMYFKCGNMEEAHSAFEEME-ERDIVSWNTMIAGYARHGFGKEALEVFD 422

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
           +MR     P  IT + VL+AC+H+GLVE+G  +F SM  ++G+  + EH+  ++D++GR 
Sbjct: 423 TMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRA 482

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           GRL++A++L+K MPFEPD  +WGALLGA R+H N EL + AAE + ++EPEN+  YVLL 
Sbjct: 483 GRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLS 542

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N+YA  G+W D +++RL+M    +KK  G+SW++
Sbjct: 543 NIYASSGKWRDVDKMRLMMHERGVKKVPGFSWIE 576


>gi|356546772|ref|XP_003541796.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Glycine max]
          Length = 713

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/611 (36%), Positives = 360/611 (58%), Gaps = 54/611 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++ + +  ++  AR+LFDEMPQR  VS N MIS YI  R    + +A  LF ++ ER+ 
Sbjct: 78  MLTAFAQNGQIQNARRLFDEMPQRTTVSNNAMISAYI--RNGCNVGKAYELFSVLAERNL 135

Query: 61  VTW---------------------------------NTVISGYAKTGEMEEALRLFNSMP 87
           V++                                 N +I+GY K GE+ EALR+F +M 
Sbjct: 136 VSYAAMIMGFVKAGKFHMAEKLYRETPYEFRDPACSNALINGYLKMGEVNEALRIFENMG 195

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
            R+VVSW+AM+ G  ++G VA A + FDRMP R+  S SA++ G +  G   E   + + 
Sbjct: 196 ERDVVSWSAMVDGLCRDGRVAAARDLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMD 255

Query: 148 CGSRCDGGEDLVRAYNTLIV----GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
                   E LV   +T +       G  GR+ E  ++   +          + F+ + V
Sbjct: 256 MKR-----EGLVEVNSTTMTIMFKACGNCGRMSEGMQIHGLVS--------RLGFEFDNV 302

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPD 263
             NS+I  Y+  G    A ++F  + ++D  +WN++ISGYIH  ++E A  +F +MP  D
Sbjct: 303 LSNSVITMYSMLGCTDMADKVFCTVSDKDIVTWNSLISGYIHNNEVEAAYRVFGRMPVKD 362

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
            ++W AM++G+++ G +E A++ F  +P K+   W ++I+G   N +YE A+  + +M  
Sbjct: 363 VISWTAMIAGFSKSGRVENAIELFNMLPAKDDFVWTAIISGFVNNNEYEEALHWYARMIW 422

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVE 382
           EG KP+  T SS+L+ S+ +V L+ G+QIH  + K  +  ++ I N+LI+ Y++ G +V+
Sbjct: 423 EGCKPNPLTISSVLAASAALVALNEGLQIHTCILKMNLEYNLSIQNSLISFYSKSGNVVD 482

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           A  IF ++ +  NV+S+N++I G A +GF  EAL ++K M+S    P ++TF++VLSAC 
Sbjct: 483 AYRIFLDV-IEPNVISYNSIISGFAQNGFGDEALGIYKKMQSEGHEPNHVTFLAVLSACT 541

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
           HAGLV+EG   F +M + YGIEP  +H+A +VDI+GR G L++A+DLI+ MPF+P   VW
Sbjct: 542 HAGLVDEGWNIFNTMKSHYGIEPEADHYACMVDILGRAGLLDEAIDLIRSMPFKPHSGVW 601

Query: 503 GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
           GA+LGA + H  ++LA++AA+ +  +EP+N+TPYV+L NMY+  G+  D + V++     
Sbjct: 602 GAILGASKTHLRLDLAKLAAQRITDLEPKNATPYVVLSNMYSAAGKKIDGDLVKMAKNLK 661

Query: 563 NIKKPTGYSWV 573
            IKK  G SW+
Sbjct: 662 GIKKSPGCSWI 672



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 196/413 (47%), Gaps = 35/413 (8%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           +  NT I+   + G ++EA  +F+ MP +N  SW AM++ F QNG + NA   FD MP R
Sbjct: 42  IQCNTQIAENGRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQR 101

Query: 121 DSASLSALVSGLIQNG-ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            + S +A++S  I+NG  + +A  +      R     +LV +Y  +I+G+ + G+   A 
Sbjct: 102 TTVSNNAMISAYIRNGCNVGKAYELFSVLAER-----NLV-SYAAMIMGFVKAGKFHMAE 155

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           KL+ + P             R+    N++I  Y K G+V  A  IFE M ERD  SW+ M
Sbjct: 156 KLYRETPYEF----------RDPACSNALINGYLKMGEVNEALRIFENMGERDVVSWSAM 205

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           + G      +  A +LF +MP  + ++W+AM+ GY   G  +     F  M ++ LV  N
Sbjct: 206 VDGLCRDGRVAAARDLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVN 265

Query: 300 S-----MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           S     M   C         +++   +   G + D    +S+++M S +    +  ++  
Sbjct: 266 STTMTIMFKACGNCGRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFC 325

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
            V+     D+   N+LI+ Y     +  A  +F  M  +K+V+SW AMI G +  G    
Sbjct: 326 TVSD---KDIVTWNSLISGYIHNNEVEAAYRVFGRMP-VKDVISWTAMIAGFSKSGRVEN 381

Query: 415 ALELFKSMRSFKVLPTYITFI--SVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
           A+EL      F +LP    F+  +++S   +    EE    +  M+ E G +P
Sbjct: 382 AIEL------FNMLPAKDDFVWTAIISGFVNNNEYEEALHWYARMIWE-GCKP 427



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 190/372 (51%), Gaps = 28/372 (7%)

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
           ++ ++  N  I+   +NG+V  A   F +MP +++AS +A+++   QNG++  A R+  +
Sbjct: 38  SKFLIQCNTQIAENGRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDE 97

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRG-RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
              R         + N +I  Y + G  V +A +LF            +V  +RN+VS+ 
Sbjct: 98  MPQRT------TVSNNAMISAYIRNGCNVGKAYELF------------SVLAERNLVSYA 139

Query: 207 SMIMCYAKAGDVVSAREIFEQMLE--RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDT 264
           +MIM + KAG    A +++ +     RD    N +I+GY+ + ++ EA  +F  M   D 
Sbjct: 140 AMIMGFVKAGKFHMAEKLYRETPYEFRDPACSNALINGYLKMGEVNEALRIFENMGERDV 199

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
           ++W+AMV G  + G +  A D F RMP +N+VSW++MI G      ++    LF+ M+ E
Sbjct: 200 VSWSAMVDGLCRDGRVAAARDLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKRE 259

Query: 325 GEKPDRHTFSSILSMSSGIVD-LHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVE 382
           G      T  +I+  + G    +  GMQIH +V++     D  ++N++ITMY+  G    
Sbjct: 260 GLVEVNSTTMTIMFKACGNCGRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDM 319

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           A  +F  +   K++V+WN++I G   +     A  +F  M    V    I++ ++++  +
Sbjct: 320 ADKVFCTVS-DKDIVTWNSLISGYIHNNEVEAAYRVFGRMPVKDV----ISWTAMIAGFS 374

Query: 443 HAGLVEEGRQHF 454
            +G VE   + F
Sbjct: 375 KSGRVENAIELF 386



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 167/360 (46%), Gaps = 21/360 (5%)

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           ++  N+ I    + G+V  A  IF +M  ++T SW  M++ +     ++ A  LF +MP 
Sbjct: 41  LIQCNTQIAENGRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQ 100

Query: 262 PDTLTWNAMVSGYAQIG-NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             T++ NAM+S Y + G N+  A + F  + ++NLVS+ +MI G      +  A KL+ +
Sbjct: 101 RTTVSNNAMISAYIRNGCNVGKAYELFSVLAERNLVSYAAMIMGFVKAGKFHMAEKLYRE 160

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGM----QIHQMVTKTVIPDVPINNALITMYAR 376
              E   P         + S+ +++ +L M    +  ++       DV   +A++    R
Sbjct: 161 TPYEFRDP---------ACSNALINGYLKMGEVNEALRIFENMGERDVVSWSAMVDGLCR 211

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
            G +  AR +F+ M   +NVVSW+AMI G    GF  E   LF  M+   ++    T ++
Sbjct: 212 DGRVAAARDLFDRMP-DRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMT 270

Query: 437 VL-SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           ++  AC + G + EG Q    +V+  G E       S++ +    G   D  D +     
Sbjct: 271 IMFKACGNCGRMSEGMQ-IHGLVSRLGFEFDNVLSNSVITMYSMLG-CTDMADKVFCTVS 328

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           + D   W +L+    +HNN    + A     ++  ++   +  +   ++  GR ++A E+
Sbjct: 329 DKDIVTWNSLISG-YIHNNE--VEAAYRVFGRMPVKDVISWTAMIAGFSKSGRVENAIEL 385


>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/535 (38%), Positives = 325/535 (60%), Gaps = 22/535 (4%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-NVVSWNAMISGF 101
           G L EAR LFD +PERD VTW  VI+GY K G M EA  LF+ + +R NVV+W AM+SG+
Sbjct: 60  GKLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFDRVDSRKNVVTWTAMVSGY 119

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
           L++  ++ A   F  MP R+  S + ++ G  Q+G +D+A  +  +   R         +
Sbjct: 120 LRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALELFDEMPERN------TVS 173

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +NT+I    QRGR++EA  LF+++P+            ++++SW +M+   AK G V  A
Sbjct: 174 WNTMIKALVQRGRIDEAMNLFERMPI------------KDVISWTAMVDGLAKNGKVDEA 221

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           R +F+ M ER+  SWN MI+GY +   ++EA  LF  MP  D  +WN M++G+ +   + 
Sbjct: 222 RRLFDCMPERNIISWNAMITGYTYNNRIDEADQLFQVMPERDFASWNTMITGFIRNREIN 281

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG-EKPDRHTFSSILSMS 340
            A   F RMPQKN++SW +MI G   NK+ E A+K+F +M  +G  KP+  T+ SILS  
Sbjct: 282 RACGLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGTYVSILSAC 341

Query: 341 SGIVDLHLGMQIHQMVTKTVIPDVPI-NNALITMYARCGAIVEARIIFEE-MKLLKNVVS 398
           S +  L  G QIHQ+++K+V  +  +  +ALI MY++ G ++ AR +F+  +   ++++S
Sbjct: 342 SDLAGLVEGQQIHQLISKSVHQENEVVTSALINMYSKSGELIAARKMFDNGLVCQRDLIS 401

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN+MI   A HG   EA+E++  MR     P+ +T++++L AC+HAGLVE+G + FK +V
Sbjct: 402 WNSMIAVYAHHGHGKEAIEMYDQMRKHGFKPSEVTYLNLLFACSHAGLVEKGMEFFKELV 461

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            +  +  R EH+  LVD+ GR GRL+D ++ I        ++ +GA+L AC VH+ V +A
Sbjct: 462 RDESLPLREEHYTCLVDLCGRAGRLKDVLNFINCDDARLSRSFYGAILSACNVHSEVSIA 521

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +   + +++   +++  YV++ N+YA  G+ + A E+R+ MK   +KK  G SWV
Sbjct: 522 KEVVKKVLETGSDDAGTYVMMSNIYAASGKREKAAEMRMKMKEKGLKKQPGCSWV 576



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 133/449 (29%), Positives = 231/449 (51%), Gaps = 51/449 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+SGY++ ++++ A  LF EMP+R++VSWN MI GY  S   G +++A  LFD MPER+ 
Sbjct: 115 MVSGYLRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQS---GRIDKALELFDEMPERNT 171

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT+I    + G ++EA+ LF  MP ++V+SW AM+ G  +NG V  A   FD MP R
Sbjct: 172 VSWNTMIKALVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAKNGKVDEARRLFDCMPER 231

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A+++G   N  +DEA ++      R     D   ++NT+I G+ +   +  A  
Sbjct: 232 NIISWNAMITGYTYNNRIDEADQLFQVMPER-----DFA-SWNTMITGFIRNREINRACG 285

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD++P            ++N++SW +MI  Y +  +   A ++F +ML       N  +
Sbjct: 286 LFDRMP------------QKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPN--V 331

Query: 241 SGYIHVLDM----------EEASNLFVKMPHPDT-LTWNAMVSGYAQIGNLELALDFFKR 289
             Y+ +L            ++   L  K  H +  +  +A+++ Y++ G L  A   F  
Sbjct: 332 GTYVSILSACSDLAGLVEGQQIHQLISKSVHQENEVVTSALINMYSKSGELIAARKMFDN 391

Query: 290 --MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
             + Q++L+SWNSMIA    +   + AI+++ QM+  G KP   T+ ++L   S    + 
Sbjct: 392 GLVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQMRKHGFKPSEVTYLNLLFACSHAGLVE 451

Query: 348 LGMQIHQMVTKTVIPDVPIN----NALITMYARCGAIVEAR--IIFEEMKLLKNVVSWNA 401
            GM+  + + +     +P+       L+ +  R G + +    I  ++ +L ++   + A
Sbjct: 452 KGMEFFKELVRD--ESLPLREEHYTCLVDLCGRAGRLKDVLNFINCDDARLSRSF--YGA 507

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPT 430
           ++  C  H   + A E+ K     KVL T
Sbjct: 508 ILSACNVHSEVSIAKEVVK-----KVLET 531


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 345/578 (59%), Gaps = 25/578 (4%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           I+  V+   +  AR  FD MP R   S+N +I+GY  +      + A  LF  MP RD  
Sbjct: 24  IAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNH---LPDAALGLFHRMPSRDLG 80

Query: 62  TWNTVISGYA-KTGEMEEALRLFNSMP-ARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
           ++N +I+G + +   + +A     S+P   +VVS+ +++ G++++G +A+AI  F +MP 
Sbjct: 81  SYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPE 140

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           R+  + + L+ G +  G ++EA ++  +   +     D+V A   ++ GY Q GR+ EAR
Sbjct: 141 RNHVTYTVLLGGFLDAGRVNEARKLFDEMPDK-----DVV-ARTAMLSGYCQAGRITEAR 194

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            LFD++P            KRN+VSW +MI  YA+ G V+ AR++FE M +R+  SW  M
Sbjct: 195 ALFDEMP------------KRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAM 242

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           + GYI    +E+A +LF  MP       NAM+ G+ Q G ++ A   F+RM  ++  +W+
Sbjct: 243 LVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWS 302

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTK 358
           +MI   E N+    A+  F +M   G +P+  +F SIL++ + +     G ++H  M+  
Sbjct: 303 AMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRC 362

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
           +   DV   +ALITMY +CG + +A+ +F  M   K+VV WN+MI G A HG   EAL +
Sbjct: 363 SFDTDVFAVSALITMYIKCGNLDKAKRVFN-MFEPKDVVMWNSMITGYAQHGLGEEALGI 421

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  +R  ++ P  IT+I VL+AC++ G V+EGR+ F SM     I     H++ +VD++G
Sbjct: 422 FDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLG 481

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           R G +++A+DLI  MP EPD  +WGAL+GACR+H N E+A+VAA+ L+++EP ++ PYVL
Sbjct: 482 RAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPGSAGPYVL 541

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           L ++Y   GRW+DA+++R  + S N+ K  G SW++++
Sbjct: 542 LSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYN 579



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 216/419 (51%), Gaps = 31/419 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++ GYV+   +A A +LF +MP+R+ V++ V++ G++    +G + EAR LFD MP++D 
Sbjct: 118 LLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLD---AGRVNEARKLFDEMPDKDV 174

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V    ++SGY + G + EA  LF+ MP RNVVSW AMISG+ QNG V  A + F+ MP R
Sbjct: 175 VARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDR 234

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++ G IQ G +++A  +           +  V A N ++VG+GQ G V+ A+ 
Sbjct: 235 NEVSWTAMLVGYIQAGHVEDAEDLFNAM------PDHPVAACNAMMVGFGQHGMVDAAKA 288

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSW 236
           +F+++   C R +G         +W++MI  Y +   ++ A   F +ML R    +  S+
Sbjct: 289 MFERM---CARDDG---------TWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSF 336

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
            ++++    +   +    L   M       D    +A+++ Y + GNL+ A   F     
Sbjct: 337 ISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEP 396

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K++V WNSMI G   +   E A+ +F  +++    PD  T+  +L+  S    +  G +I
Sbjct: 397 KDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREI 456

Query: 353 HQM--VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
                +  ++       + ++ +  R G + EA  +   M +  + + W A++G C  H
Sbjct: 457 FNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMH 515



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 182/374 (48%), Gaps = 29/374 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+SGY +   + +AR LFDEMP+R+VVSW  MISGY     +G +  AR LF++MP+R+ 
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQ---NGKVILARKLFEVMPDRNE 236

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  ++ GY + G +E+A  LFN+MP   V + NAM+ GF Q+G V  A   F+RM  R
Sbjct: 237 VSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCAR 296

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  + SA++    QN  L EA     +    C G      ++ +++         +  R+
Sbjct: 297 DDGTWSAMIKVYEQNEFLMEALSTFREM--LCRGIRPNYTSFISILTVCAALATADYGRE 354

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           L   + + C        F  ++ + +++I  Y K G++  A+ +F     +D   WN+MI
Sbjct: 355 LHAAM-LRCS-------FDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMI 406

Query: 241 SGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           +GY      EEA  +F  +      PD +T+  +++  +  G ++   + F  M   + +
Sbjct: 407 TGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSI 466

Query: 297 SWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
              +    C  +        + A+ L   M VE   PD   + +++    G   +H   +
Sbjct: 467 RLGAAHYSCMVDLLGRAGLVDEALDLINNMPVE---PDAIIWGALM----GACRMHKNAE 519

Query: 352 IHQMVTKTVIPDVP 365
           I ++  K ++   P
Sbjct: 520 IAEVAAKKLLELEP 533



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 154/311 (49%), Gaps = 28/311 (9%)

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           +V+ N+ I    +AG++  AR  F+ M  R T S+N +I+GY      + A  LF +MP 
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 262 PDTLTWNAMVSGYA-QIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFI 319
            D  ++NA+++G + +   L  A      +P   ++VS+ S++ G   +     AI+LF 
Sbjct: 77  RDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFH 136

Query: 320 QMQVEGEKPDRH--TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARC 377
           QM      P+R+  T++ +L    G +D     +  ++  +    DV    A+++ Y + 
Sbjct: 137 QM------PERNHVTYTVLL---GGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQA 187

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP--TYITFI 435
           G I EAR +F+EM   +NVVSW AMI G A +G    A +L      F+V+P    +++ 
Sbjct: 188 GRITEARALFDEMP-KRNVVSWTAMISGYAQNGKVILARKL------FEVMPDRNEVSWT 240

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           ++L     AG VE+    F +M +     P     A +V   G+HG ++ A  + + M  
Sbjct: 241 AMLVGYIQAGHVEDAEDLFNAMPD----HPVAACNAMMVGF-GQHGMVDAAKAMFERMCA 295

Query: 496 EPDKAVWGALL 506
             D   W A++
Sbjct: 296 R-DDGTWSAMI 305


>gi|224126355|ref|XP_002329533.1| predicted protein [Populus trichocarpa]
 gi|222870242|gb|EEF07373.1| predicted protein [Populus trichocarpa]
          Length = 693

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/580 (36%), Positives = 340/580 (58%), Gaps = 21/580 (3%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+ G      + +AR+LF EMP+R+VVSWN M++G I +     LEEAR +FD +PE++ 
Sbjct: 101 MLCGLADAGRICEARELFKEMPERNVVSWNAMVAGLIKNED---LEEARRVFDEIPEKNV 157

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN +I G+A+ G+MEEA  LF  M  RNV++W  MI+G+ + GDV  A  FF R+P R
Sbjct: 158 VSWNAMIKGFAENGKMEEARVLFEEMEDRNVITWTTMIAGYCRIGDVREAYCFFCRIPER 217

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCD---GGEDLVR-AYNTLIVGYGQRGRVE 176
           +  S +A++SG   NG   EA  + ++   R +    GE  +  AY    + +   G+  
Sbjct: 218 NVVSWTAMISGFTWNGYYGEALLLFLEMKRRSNIAPNGETFISLAYACAGMRFHHLGKQL 277

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-S 235
            A+ + + +    +  +G +          S+I  Y+  G +  A  +F + L      S
Sbjct: 278 HAQLIINGLEY--EDYDGRIA--------KSLIHMYSLFGAMDYAHYVFNKNLNSHAVQS 327

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
            N MI+GY  +  +E+A  LF  +P  D +TW +M+ GY  IGN+  A   F+ MP K+ 
Sbjct: 328 CNHMINGYTRIGQVEKARELFDTIPARDNITWTSMIVGYFDIGNVSEACYLFENMPDKDS 387

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           V+W SMI+G   N+ +  A    ++M   G  P   T++ +   +  I  L  G Q+H M
Sbjct: 388 VAWTSMISGLVQNELFLKATSFLLRMLAHGAPPLSSTYAILFGAAGAIAHLDFGRQLHNM 447

Query: 356 VTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           + KT+   D+ ++N+LI+MYA+CG I +A  IF  M + ++++SWN MI G A H  A E
Sbjct: 448 LMKTLSDCDLILSNSLISMYAKCGEIHDAYSIFTNM-IYRDLISWNTMIMGLAHHALANE 506

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
            L++F++M      P  +TF+ +LSAC+HAGLV +G + FK+M + Y I+P +EH+ S++
Sbjct: 507 TLKVFETMLQSGTRPNSVTFLGILSACSHAGLVSQGCKLFKAMRDVYAIQPGLEHYISMI 566

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV-HNNVELAQVAAEALMKVEPENS 533
           +++GR G++ +A +LI G+PFE + A+WGALLG C V   N ++AQ AA  L++++P N+
Sbjct: 567 NLLGRAGKVREAEELILGLPFETNHAIWGALLGVCGVAEKNADIAQHAARRLLELDPLNA 626

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
             +V L N+YA  G+  +  ++R  M    ++K  G SW+
Sbjct: 627 PAHVALCNIYAACGKHIEEQKLRKEMGLKGVRKVPGCSWI 666



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 149/520 (28%), Positives = 244/520 (46%), Gaps = 52/520 (10%)

Query: 6   VKRREMAKARKLFDEMPQRD----VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           + ++++ +AR L D+ P+R     +  W  +++ Y  SR  GF++E+R LFDIMPER+ V
Sbjct: 9   LSQQKLQQARNLLDKFPERSRHSRIAHWTSLLTKY--SR-IGFIDESRVLFDIMPERNIV 65

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           ++N ++SGY + G + EA  LF  MP RNVVSW +M+ G    G +  A E F  MP R+
Sbjct: 66  SYNVMLSGYLQCGRLSEARGLFEEMPERNVVSWTSMLCGLADAGRICEARELFKEMPERN 125

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S +A+V+GLI+N +L+EA RV  +        E  V ++N +I G+ + G++EEAR L
Sbjct: 126 VVSWNAMVAGLIKNEDLEEARRVFDEI------PEKNVVSWNAMIKGFAENGKMEEARVL 179

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           F+++              RN+++W +MI  Y + GDV  A   F ++ ER+  SW  MIS
Sbjct: 180 FEEME------------DRNVITWTTMIAGYCRIGDVREAYCFFCRIPERNVVSWTAMIS 227

Query: 242 GYIHVLDMEEASNLFVKMPHPDTLTWNA---MVSGYAQIGNLELALDFFKRMPQKNLVSW 298
           G+       EA  LF++M     +  N    +   YA  G   +      +     L+  
Sbjct: 228 GFTWNGYYGEALLLFLEMKRRSNIAPNGETFISLAYACAG---MRFHHLGKQLHAQLI-- 282

Query: 299 NSMIAGCETNKDYEGAI-KLFIQM-----------QVEGEKPDRHTFSSILSMSSGIVDL 346
              I G E  +DY+G I K  I M            V  +  + H   S   M +G   +
Sbjct: 283 ---INGLEY-EDYDGRIAKSLIHMYSLFGAMDYAHYVFNKNLNSHAVQSCNHMINGYTRI 338

Query: 347 HLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
               +  ++       D     ++I  Y   G + EA  +FE M   K+ V+W +MI G 
Sbjct: 339 GQVEKARELFDTIPARDNITWTSMIVGYFDIGNVSEACYLFENMP-DKDSVAWTSMISGL 397

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
             +    +A      M +    P   T+  +  A      ++ GRQ   +M+ +   +  
Sbjct: 398 VQNELFLKATSFLLRMLAHGAPPLSSTYAILFGAAGAIAHLDFGRQ-LHNMLMKTLSDCD 456

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +    SL+ +  + G + DA  +   M +  D   W  ++
Sbjct: 457 LILSNSLISMYAKCGEIHDAYSIFTNMIYR-DLISWNTMI 495


>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g35030, mitochondrial; Flags: Precursor
 gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
 gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
 gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/535 (37%), Positives = 324/535 (60%), Gaps = 22/535 (4%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-NVVSWNAMISGF 101
           G + EAR LFD +PERD VTW  VI+GY K G+M EA  LF+ + +R NVV+W AM+SG+
Sbjct: 60  GKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGY 119

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
           L++  ++ A   F  MP R+  S + ++ G  Q+G +D+A  +  +   R       + +
Sbjct: 120 LRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERN------IVS 173

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +N+++    QRGR++EA  LF+++P            +R++VSW +M+   AK G V  A
Sbjct: 174 WNSMVKALVQRGRIDEAMNLFERMP------------RRDVVSWTAMVDGLAKNGKVDEA 221

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           R +F+ M ER+  SWN MI+GY     ++EA  LF  MP  D  +WN M++G+ +   + 
Sbjct: 222 RRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMN 281

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMS 340
            A   F RMP+KN++SW +MI G   NK+ E A+ +F +M  +G  KP+  T+ SILS  
Sbjct: 282 KACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSAC 341

Query: 341 SGIVDLHLGMQIHQMVTKTVIPDVPI-NNALITMYARCGAIVEARIIFEE-MKLLKNVVS 398
           S +  L  G QIHQ+++K+V     I  +AL+ MY++ G ++ AR +F+  +   ++++S
Sbjct: 342 SDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLIS 401

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN+MI   A HG   EA+E++  MR     P+ +T++++L AC+HAGLVE+G + FK +V
Sbjct: 402 WNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLV 461

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            +  +  R EH+  LVD+ GR GRL+D  + I        ++ +GA+L AC VHN V +A
Sbjct: 462 RDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACNVHNEVSIA 521

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +   + +++   +++  YVL+ N+YA  G+ ++A E+R+ MK   +KK  G SWV
Sbjct: 522 KEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWV 576



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 136/449 (30%), Positives = 233/449 (51%), Gaps = 51/449 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+SGY++ ++++ A  LF EMP+R+VVSWN MI GY  S   G +++A  LFD MPER+ 
Sbjct: 115 MVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQS---GRIDKALELFDEMPERNI 171

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN+++    + G ++EA+ LF  MP R+VVSW AM+ G  +NG V  A   FD MP R
Sbjct: 172 VSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPER 231

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A+++G  QN  +DEA ++      R     D   ++NT+I G+ +   + +A  
Sbjct: 232 NIISWNAMITGYAQNNRIDEADQLFQVMPER-----DFA-SWNTMITGFIRNREMNKACG 285

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD++P            ++N++SW +MI  Y +  +   A  +F +ML   +   N  +
Sbjct: 286 LFDRMP------------EKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPN--V 331

Query: 241 SGYIHVLDM----------EEASNLFVKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKR 289
             Y+ +L            ++   L  K  H  + +  +A+++ Y++ G L  A   F  
Sbjct: 332 GTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDN 391

Query: 290 --MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
             + Q++L+SWNSMIA    +   + AI+++ QM+  G KP   T+ ++L   S    + 
Sbjct: 392 GLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVE 451

Query: 348 LGMQIHQMVTKTVIPDVPIN----NALITMYARCGAI--VEARIIFEEMKLLKNVVSWNA 401
            GM+  + + +     +P+       L+ +  R G +  V   I  ++ +L ++   + A
Sbjct: 452 KGMEFFKDLVRD--ESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLSRSF--YGA 507

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPT 430
           ++  C  H   + A E+ K     KVL T
Sbjct: 508 ILSACNVHNEVSIAKEVVK-----KVLET 531


>gi|297734691|emb|CBI16742.3| unnamed protein product [Vitis vinifera]
          Length = 674

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/563 (38%), Positives = 325/563 (57%), Gaps = 27/563 (4%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           ARKLFDEMP  D VS+  MI+ Y+ +     L +A  LF  MP+R  V  + +I GYAK 
Sbjct: 88  ARKLFDEMPHHDNVSYTAMITAYLKNNE---LRKAEKLFQTMPDRTIVAESAMIDGYAKA 144

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI 133
           G M+ A ++F++M   NV SW ++ISG+ ++G VA A + FD+MP ++  S + +V G  
Sbjct: 145 GLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYA 204

Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
           +NG +D+A  V  +        E    ++  ++  Y   GR +EA KLF ++P       
Sbjct: 205 RNGLIDQARSVFNQMP------EKNTISWTAMMKSYVDNGRTDEALKLFHEMP------- 251

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEAS 253
                +RN+ SWN+MI        V  A ++F  M  R+  SW  M+SG       + A 
Sbjct: 252 -----QRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAR 306

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
             F +MP+ D   WNAM++ Y     +  A + F  M ++N+V+WN+MI G   ++    
Sbjct: 307 EYFDQMPNKDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAMIDGYARHRPDGE 366

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALIT 372
           A+K  I M     +P+  T + IL+   G+++L   MQ H + +      +  ++NALIT
Sbjct: 367 AMKHLILMLRSCIRPNETTMTIILTSCWGMLEL---MQAHALAIVVGCECETSLSNALIT 423

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY+R G I  +RI FE +K  K+VVSW AM+     HG    AL +F  M      P  I
Sbjct: 424 MYSRIGDISSSRIAFESLKA-KDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEI 482

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TF+ VLSAC+HAGLV++G++ F SM   YG+EPR EH++ LVDI+GR G++ +AMD++  
Sbjct: 483 TFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQVHEAMDVVWK 542

Query: 493 MP-FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
           MP  E D AV GALLGACR+H NVE+A    + L++++P +S  YVLL N++A  G WD+
Sbjct: 543 MPECERDGAVLGALLGACRLHGNVEMADYIGQKLIELQPNSSGGYVLLANVFAARGNWDE 602

Query: 552 ANEVRLLMKSNNIKKPTGYSWVD 574
             EVR  MK  N++K  G+S ++
Sbjct: 603 FAEVRKKMKDRNVRKVPGFSQIE 625



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 214/449 (47%), Gaps = 91/449 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +ISGY +  ++AKA +LFD+MP ++VVSW  M+ GY     +G +++AR +F+ MPE++ 
Sbjct: 168 LISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYAR---NGLIDQARSVFNQMPEKNT 224

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++W  ++  Y   G  +EAL+LF+ MP RN+ SWN MISG L    V  A + F  MP R
Sbjct: 225 ISWTAMMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLR 284

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           ++ S + +VSGL +NG                         +  L            AR+
Sbjct: 285 NAVSWTIMVSGLARNG-------------------------FTKL------------ARE 307

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            FD++P             ++I +WN+MI  Y     +V A E+F  M ER+  +WN MI
Sbjct: 308 YFDQMP------------NKDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAMI 355

Query: 241 SGYI-HVLDMEEASNLFVKM-----PHPDTLT------W--------------------- 267
            GY  H  D E   +L + +     P+  T+T      W                     
Sbjct: 356 DGYARHRPDGEAMKHLILMLRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCECET 415

Query: 268 ---NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
              NA+++ Y++IG++  +   F+ +  K++VSW +M+     +   + A+ +F  M   
Sbjct: 416 SLSNALITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKS 475

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVE 382
           G KPD  TF  +LS  S    +  G ++   +++   + P     + L+ +  R G + E
Sbjct: 476 GTKPDEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQVHE 535

Query: 383 A-RIIFEEMKLLKNVVSWNAMIGGCASHG 410
           A  ++++  +  ++     A++G C  HG
Sbjct: 536 AMDVVWKMPECERDGAVLGALLGACRLHG 564



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 127/429 (29%), Positives = 208/429 (48%), Gaps = 31/429 (7%)

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
           ++ + N  IS   + G+V  A + FD MP  D+ S +A+++  ++N EL +A ++     
Sbjct: 68  DIYNCNIKISQLGRCGNVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQTMP 127

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
            R       + A + +I GY + G ++ A+K+FD +               N+ SW S+I
Sbjct: 128 DRT------IVAESAMIDGYAKAGLMDSAQKVFDAM------------IDTNVFSWTSLI 169

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA 269
             Y + G V  A ++F+QM  ++  SW TM+ GY     +++A ++F +MP  +T++W A
Sbjct: 170 SGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTA 229

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           M+  Y   G  + AL  F  MPQ+NL SWN+MI+GC   K    A KLF  M      P 
Sbjct: 230 MMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVNEAFKLFHLM------PL 283

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEE 389
           R+  S  + M SG+          +   +    D+   NA+IT Y     IVEA  +F  
Sbjct: 284 RNAVSWTI-MVSGLARNGFTKLAREYFDQMPNKDIAAWNAMITAYVDECLIVEASELFNL 342

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           M   +N+V+WNAMI G A H    EA++    M    + P   T   +L++C   G++E 
Sbjct: 343 MT-ERNIVTWNAMIDGYARHRPDGEAMKHLILMLRSCIRPNETTMTIILTSC--WGMLEL 399

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
            + H  ++V   G E       +L+ +  R G +  +    + +  + D   W A+L A 
Sbjct: 400 MQAHALAIV--VGCECETSLSNALITMYSRIGDISSSRIAFESLKAK-DVVSWTAMLLAF 456

Query: 510 RVHNNVELA 518
             H + + A
Sbjct: 457 TYHGHGDHA 465



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 23/217 (10%)

Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
           ++ + D+   N  I+   RCG +  AR +F+EM    N VS+ AMI     +       E
Sbjct: 63  RSTVLDIYNCNIKISQLGRCGNVRGARKLFDEMPHHDN-VSYTAMITAYLKNN------E 115

Query: 418 LFKSMRSFKVLP--TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L K+ + F+ +P  T +   +++   A AGL++  ++ F +M     I+  +  + SL+ 
Sbjct: 116 LRKAEKLFQTMPDRTIVAESAMIDGYAKAGLMDSAQKVFDAM-----IDTNVFSWTSLIS 170

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
              R G++  A  L   MP +   +    +LG  R      L   A     ++  +N+  
Sbjct: 171 GYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYAR----NGLIDQARSVFNQMPEKNTIS 226

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
           +  +   Y D GR D+A ++   M   N+     YSW
Sbjct: 227 WTAMMKSYVDNGRTDEALKLFHEMPQRNL-----YSW 258


>gi|356532382|ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09410-like [Glycine max]
          Length = 669

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/569 (37%), Positives = 329/569 (57%), Gaps = 27/569 (4%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++ +ARKLFDEMPQRD VS+N MI+ Y+ ++    L EA  +F  MP+R+ V  + +I G
Sbjct: 80  KLDEARKLFDEMPQRDDVSYNSMIAVYLKNKD---LLEAETVFKEMPQRNVVAESAMIDG 136

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           YAK G +++A ++F++M  RN  SW ++ISG+   G +  A+  FD+MP R+  S + +V
Sbjct: 137 YAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEALHLFDQMPERNVVSWTMVV 196

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
            G  +NG +D A R            E  + A+  ++  Y   G   EA KLF ++P   
Sbjct: 197 LGFARNGLMDHAGRFFYLMP------EKNIIAWTAMVKAYLDNGCFSEAYKLFLEMP--- 247

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
                    +RN+ SWN MI    +A  V  A  +FE M +R+  SW  M+SG      +
Sbjct: 248 ---------ERNVRSWNIMISGCLRANRVDEAIGLFESMPDRNHVSWTAMVSGLAQNKMI 298

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
             A   F  MP+ D   W AM++     G ++ A   F ++P+KN+ SWN+MI G   N 
Sbjct: 299 GIARKYFDLMPYKDMAAWTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTMIDGYARNS 358

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINN 368
               A+ LF+ M     +P+  T +S+++   G+V+L   MQ H MV       +  + N
Sbjct: 359 YVGEALNLFVLMLRSCFRPNETTMTSVVTSCDGMVEL---MQAHAMVIHLGFEHNTWLTN 415

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           ALIT+Y++ G +  AR++FE++K  K+VVSW AMI   ++HG    AL++F  M    + 
Sbjct: 416 ALITLYSKSGDLCSARLVFEQLKS-KDVVSWTAMIVAYSNHGHGHHALQVFARMLVSGIK 474

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P  +TF+ +LSAC+H GLV +GR+ F S+   Y + P+ EH++ LVDI+GR G +++AMD
Sbjct: 475 PDEVTFVGLLSACSHVGLVHQGRRLFDSIKGTYNLTPKAEHYSCLVDILGRAGLVDEAMD 534

Query: 489 LIKGMPFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
           ++  +P    D+AV  ALLGACR+H +V +A    E L+++EP +S  YVLL N YA  G
Sbjct: 535 VVATIPPSARDEAVLVALLGACRLHGDVAIANSIGEKLLELEPSSSGGYVLLANTYAAEG 594

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           +WD+  +VR  M+  N+K+  GYS +  +
Sbjct: 595 QWDEFAKVRKRMRERNVKRIPGYSQIQIT 623



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/449 (30%), Positives = 221/449 (49%), Gaps = 60/449 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI GY K   +  ARK+FD M QR+  SW  +ISGY S    G +EEA +LFD MPER+ 
Sbjct: 133 MIDGYAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFS---CGKIEEALHLFDQMPERNV 189

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  V+ G+A+ G M+ A R F  MP +N+++W AM+  +L NG  + A + F  MP R
Sbjct: 190 VSWTMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLEMPER 249

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S + ++SG ++   +DEA  +      R         ++  ++ G  Q   +  ARK
Sbjct: 250 NVRSWNIMISGCLRANRVDEAIGLFESMPDRNH------VSWTAMVSGLAQNKMIGIARK 303

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            FD +P             +++ +W +MI      G +  AR++F+Q+ E++  SWNTMI
Sbjct: 304 YFDLMPY------------KDMAAWTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTMI 351

Query: 241 SGYIHVLDMEEASNLFVKM------PHPDTL----------------------------T 266
            GY     + EA NLFV M      P+  T+                            T
Sbjct: 352 DGYARNSYVGEALNLFVLMLRSCFRPNETTMTSVVTSCDGMVELMQAHAMVIHLGFEHNT 411

Query: 267 W--NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
           W  NA+++ Y++ G+L  A   F+++  K++VSW +MI     +     A+++F +M V 
Sbjct: 412 WLTNALITLYSKSGDLCSARLVFEQLKSKDVVSWTAMIVAYSNHGHGHHALQVFARMLVS 471

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV--TKTVIPDVPINNALITMYARCGAIVE 382
           G KPD  TF  +LS  S +  +H G ++   +  T  + P     + L+ +  R G + E
Sbjct: 472 GIKPDEVTFVGLLSACSHVGLVHQGRRLFDSIKGTYNLTPKAEHYSCLVDILGRAGLVDE 531

Query: 383 ARIIFEEM-KLLKNVVSWNAMIGGCASHG 410
           A  +   +    ++     A++G C  HG
Sbjct: 532 AMDVVATIPPSARDEAVLVALLGACRLHG 560



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 209/438 (47%), Gaps = 54/438 (12%)

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV---------------NCDRGEGNVRFK- 199
           +D +   N  I   G+ G+++EARKLFD++P                N D  E    FK 
Sbjct: 62  DDALHKRNVEITILGRHGKLDEARKLFDEMPQRDDVSYNSMIAVYLKNKDLLEAETVFKE 121

Query: 200 ---RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF 256
              RN+V+ ++MI  YAK G +  AR++F+ M +R+ FSW ++ISGY     +EEA +LF
Sbjct: 122 MPQRNVVAESAMIDGYAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEALHLF 181

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
            +MP  + ++W  +V G+A+ G ++ A  FF  MP+KN+++W +M+     N  +  A K
Sbjct: 182 DQMPERNVVSWTMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYK 241

Query: 317 LFIQMQVEGEK-------------------------PDRHTFSSILSMSSGIVDLHLGMQ 351
           LF++M     +                         PDR+  S   +M SG+    +   
Sbjct: 242 LFLEMPERNVRSWNIMISGCLRANRVDEAIGLFESMPDRNHVSWT-AMVSGLAQNKMIGI 300

Query: 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
             +        D+    A+IT     G + EAR +F+++   KNV SWN MI G A + +
Sbjct: 301 ARKYFDLMPYKDMAAWTAMITACVDEGLMDEARKLFDQIP-EKNVGSWNTMIDGYARNSY 359

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             EAL LF  M      P   T  SV+++C   G+VE  + H  +MV   G E       
Sbjct: 360 VGEALNLFVLMLRSCFRPNETTMTSVVTSC--DGMVELMQAH--AMVIHLGFEHNTWLTN 415

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA-QVAAEALMK-VE 529
           +L+ +  + G L  A  + + +    D   W A++ A   H +   A QV A  L+  ++
Sbjct: 416 ALITLYSKSGDLCSARLVFEQLK-SKDVVSWTAMIVAYSNHGHGHHALQVFARMLVSGIK 474

Query: 530 PENSTPYVLLYNMYADVG 547
           P+  T +V L +  + VG
Sbjct: 475 PDEVT-FVGLLSACSHVG 491


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/600 (36%), Positives = 323/600 (53%), Gaps = 69/600 (11%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           +V   N +I  Y      G LE+ R LFD MP+R+  TWN+V++G  K G ++EA  LF 
Sbjct: 54  EVFIQNRLIDAYAKC---GSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFR 110

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS--ALVSGLIQNGELDEAA 142
           SMP R+  +WN+M+SGF Q+     A+ +F  M  ++   L+     SGL     L++  
Sbjct: 111 SMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMH-KEGFVLNEYTFASGLSACSGLNDMN 169

Query: 143 RVLVKCGSRCDGGEDLVRAY--NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           R  V+  S       L   Y  + L+  Y + G V +A+++FD++              R
Sbjct: 170 RG-VQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMG------------DR 216

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLE------------------------------ 230
           N+VSWNS+I CY + G  V A ++F+ MLE                              
Sbjct: 217 NVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVH 276

Query: 231 ----------RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNL 280
                      D    N  +  Y     ++EA  +F  MP  + +   +MVSGYA   + 
Sbjct: 277 ARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAAST 336

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           + A   F +M ++N+VSWN++IAG   N + E A+ LF  ++ E   P  +TF++IL   
Sbjct: 337 KAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKAC 396

Query: 341 SGIVDLHLGMQIHQMVTKTVIP-------DVPINNALITMYARCGAIVEARIIFEEMKLL 393
           + + DLHLGMQ H  V K           D+ + N+LI MY +CG + E  ++F +M + 
Sbjct: 397 ADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-ME 455

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           ++ VSWNAMI G A +G+  EALELF+ M      P +IT I VLSAC HAG VEEGR +
Sbjct: 456 RDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHY 515

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
           F SM  ++G+ P  +H+  +VD++GR G LE+A  +I+ MP +PD  +WG+LL AC+VH 
Sbjct: 516 FSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHR 575

Query: 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           N+ L +  AE L +VE  NS PYVLL NMYA++G+W DA  VR LM+   + K  G SW+
Sbjct: 576 NITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWI 635



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 201/401 (50%), Gaps = 15/401 (3%)

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR-EIFEQMLERDTFSW 236
           ARK+F K+  +      +  F + +   +S I     A DV      + +     + F  
Sbjct: 2   ARKIFLKLAGDLSSFTVSSPFAKLL---DSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQ 58

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           N +I  Y     +E+   LF KMP  +  TWN++V+G  ++G L+ A   F+ MP+++  
Sbjct: 59  NRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           +WNSM++G   +   E A+  F  M  EG   + +TF+S LS  SG+ D++ G+QIH ++
Sbjct: 119 TWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLI 178

Query: 357 TKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            K+  + DV I +AL+ MY++CG + +A+ +F+EM   +NVVSWN++I     +G A EA
Sbjct: 179 AKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMG-DRNVVSWNSLITCYEQNGPAVEA 237

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L++F+ M    V P  +T  SV+SACA    ++ G++    +V    +   I    + VD
Sbjct: 238 LKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVD 297

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM--KVEPENS 533
           +  +  R+++A  +   MP      +   +     V      A   A  LM  K+   N 
Sbjct: 298 MYAKCSRIKEARFIFDSMP------IRNVIAETSMVSGYAMAASTKAARLMFTKMAERNV 351

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             +  L   Y   G  ++A  +  L+K  ++  PT Y++ +
Sbjct: 352 VSWNALIAGYTQNGENEEALSLFCLLKRESV-CPTHYTFAN 391


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/566 (37%), Positives = 316/566 (55%), Gaps = 56/566 (9%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM-PERDCVTWNTVISGYAK 72
           ARKLFD  P+RDVVSW  ++S Y      G L +AR LFD     R+ VTW  ++SGYA+
Sbjct: 59  ARKLFDGTPERDVVSWTALVSAYAR---RGMLRDARSLFDRSDARRNVVTWTALLSGYAR 115

Query: 73  TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGL 132
            G ++EA  LF  MP RNVVSWN M+  +   G   +A   FDRMP RD+ S + L++ L
Sbjct: 116 AGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAML 175

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           +++G +D+A  +  +   R       V A+ T++ G  + G V+EAR LFD +P      
Sbjct: 176 VRSGSVDKARELFGRMPERD------VMAWTTMVDGVARSGNVDEARLLFDSMP------ 223

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
                 +RN+VSWN+MI  Y +   +  A ++F +M  RD  S N MI+G+I   D++ A
Sbjct: 224 ------ERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRA 277

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
             LF +MP  + +TW  M++GY +    EL+L  F+                        
Sbjct: 278 RKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFR------------------------ 313

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALI 371
                   M + G +P++ TF   L   S +  L  G Q+HQM+ KT    D  + +AL+
Sbjct: 314 -------GMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSALM 366

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            +YA+CG +  AR +F ++   K+++SWN +I   A HG   EA+ L++ M+     P  
Sbjct: 367 NVYAKCGEVGLARKLF-DLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPND 425

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           +T++ +LSAC+H+GLV+EG + F+SMVN+  I  R EH+  L+D+  R GRL+DA  LI 
Sbjct: 426 VTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIH 485

Query: 492 GMPFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
            +  +P   +VW ALLG C  H N  +  +AA  L++ EP+N+  Y LL N+YA  G+W 
Sbjct: 486 YLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLIQAEPDNAGTYTLLSNIYASAGKWK 545

Query: 551 DANEVRLLMKSNNIKKPTGYSWVDFS 576
           +A E+R  M +  +KK  G SW++ +
Sbjct: 546 EAAEIRSEMNNRGLKKQPGCSWIEVA 571



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 229/453 (50%), Gaps = 64/453 (14%)

Query: 1   MISGYVKRREMAKARKLFDEM-PQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           ++S Y +R  +  AR LFD    +R+VV+W  ++SGY     +G ++EA  LF  MP+R+
Sbjct: 77  LVSAYARRGMLRDARSLFDRSDARRNVVTWTALLSGYAR---AGLVDEAEVLFQRMPQRN 133

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            V+WNT++  YA  G   +A  LF+ MP R+  SWN +++  +++G V  A E F RMP 
Sbjct: 134 VVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAMLVRSGSVDKARELFGRMPE 193

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           RD  + + +V G+ ++G +DE AR+L          E  V ++N +I GY +  R++EA 
Sbjct: 194 RDVMAWTTMVDGVARSGNVDE-ARLLFDSMP-----ERNVVSWNAMISGYTRNHRLDEAL 247

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            LF K+P             R+I S N MI  + +  D+  AR++F++M ER+  +W TM
Sbjct: 248 DLFTKMP------------HRDIASCNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTM 295

Query: 240 ISGYIHVLDMEEASNLFVKM------PHP------------------------------- 262
           ++GY+     E +  LF  M      P+                                
Sbjct: 296 MNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAF 355

Query: 263 --DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             DT   +A+++ YA+ G + LA   F    +K+L+SWN +IA    +     AI L+ +
Sbjct: 356 QVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEK 415

Query: 321 MQVEGEKPDRHTFSSILSM--SSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCG 378
           MQ  G +P+  T+  +LS    SG+VD  L +    +  +++         LI + +R G
Sbjct: 416 MQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAG 475

Query: 379 AIVEARIIFEEMKLLKNVVS-WNAMIGGCASHG 410
            + +A+ +   +K+     S W+A++GGC +HG
Sbjct: 476 RLDDAKRLIHYLKIKPASGSVWSALLGGCNAHG 508



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 213/458 (46%), Gaps = 80/458 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY-ISSRG------------------ 41
           ++SGY +   + +A  LF  MPQR+VVSWN M+  Y ++ R                   
Sbjct: 109 LLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSW 168

Query: 42  ---------SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV 92
                    SG +++AR LF  MPERD + W T++ G A++G ++EA  LF+SMP RNVV
Sbjct: 169 NILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVV 228

Query: 93  SWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRC 152
           SWNAMISG+ +N  +  A++ F +MP RD AS + +++G IQN +L  A ++  +   R 
Sbjct: 229 SWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDEMPERN 288

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG-------------------E 193
                 V  + T++ GY +  + E +  LF  + ++  R                    E
Sbjct: 289 ------VVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCE 342

Query: 194 G--------NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
           G           F+ +    ++++  YAK G+V  AR++F+   E+D  SWN +I+ Y H
Sbjct: 343 GKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAH 402

Query: 246 VLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS---- 297
                EA +L+ KM      P+ +T+  ++S  +  G ++  L  F+ M     ++    
Sbjct: 403 HGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDE 462

Query: 298 -WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
            +  +I  C      + A +L   +++   KP      S+ S   G  + H    I  + 
Sbjct: 463 HYTCLIDLCSRAGRLDDAKRLIHYLKI---KP---ASGSVWSALLGGCNAHGNESIGNLA 516

Query: 357 TKTVIPDVPINNALITM----YARCGAIVEARIIFEEM 390
            + +I   P N    T+    YA  G   EA  I  EM
Sbjct: 517 ARNLIQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEM 554


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/567 (37%), Positives = 318/567 (56%), Gaps = 58/567 (10%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--RDCVTWNTVISGYA 71
           ARKLFD  P  DVVSW  ++S Y      G L +AR LFD  P+  R+ VTW  ++SGYA
Sbjct: 61  ARKLFDGTPDWDVVSWTALVSAYAR---RGMLRDARELFD-RPDARRNVVTWTALLSGYA 116

Query: 72  KTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSG 131
           +   ++EA  LF  MP RNVVSWN M+  +   G V +A   FDRMP RD+ S + L++ 
Sbjct: 117 RARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLAT 176

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
           L+++G +D+A  +  +   R       V A+ T++ G  + G+V+EAR LFD +P     
Sbjct: 177 LVRSGSVDKARELFGRMPERD------VMAWTTMVDGVARSGKVDEARVLFDSMP----- 225

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEE 251
                  +RN+VSWN+MI  Y +   +  A ++F +M ERD  S N M++G+I   D++ 
Sbjct: 226 -------ERNVVSWNAMISGYTRNHRIDEALDLFMKMPERDIASCNIMVTGFIQNKDLKR 278

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           A  LF +MP  + +TW  M++GY +    ELAL                           
Sbjct: 279 ARELFDEMPERNVVTWTTMMNGYLKGKQSELAL--------------------------- 311

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNAL 370
                LF  M + G +P++ TF   L   S +  L  G Q+HQM+ KT    D  + +AL
Sbjct: 312 ----GLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESAL 367

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           + +YA+CG I  AR +F ++   K+++SWN +I   A HG   EA+ L++ M+     P 
Sbjct: 368 MNVYAKCGEIGLARKLF-DLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPN 426

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            +T++ +LSAC+H+GLV+EG + F+SMVN+  I  R EH+  L+D+  R GRL+DA  LI
Sbjct: 427 DVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLI 486

Query: 491 KGMPFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
             +  +P   +VW ALLG C  H N  +  +AA  L++ EP+N+  Y LL N+YA  G+W
Sbjct: 487 HYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKW 546

Query: 550 DDANEVRLLMKSNNIKKPTGYSWVDFS 576
            +A E+R  M +  +KK  G SW++ +
Sbjct: 547 KEAAEIRSEMNNRGLKKQPGCSWIEVA 573



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 139/453 (30%), Positives = 234/453 (51%), Gaps = 64/453 (14%)

Query: 1   MISGYVKRREMAKARKLFDEM-PQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           ++S Y +R  +  AR+LFD    +R+VV+W  ++SGY  +R    ++EA  LF  MP+R+
Sbjct: 79  LVSAYARRGMLRDARELFDRPDARRNVVTWTALLSGYARAR---LVDEAEALFQRMPQRN 135

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            V+WNT++  YA  G + +A  LF+ MP R+  SWN +++  +++G V  A E F RMP 
Sbjct: 136 VVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGRMPE 195

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           RD  + + +V G+ ++G++DE ARVL          E  V ++N +I GY +  R++EA 
Sbjct: 196 RDVMAWTTMVDGVARSGKVDE-ARVLFDSMP-----ERNVVSWNAMISGYTRNHRIDEAL 249

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            LF K+P            +R+I S N M+  + +  D+  ARE+F++M ER+  +W TM
Sbjct: 250 DLFMKMP------------ERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTM 297

Query: 240 ISGYIHVLDMEEASNLFVKM----PHPDTLTW---------------------------- 267
           ++GY+     E A  LF  M      P+ +T+                            
Sbjct: 298 MNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTF 357

Query: 268 -------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                  +A+++ YA+ G + LA   F    +K+L+SWN +IA    +     AI L+ +
Sbjct: 358 QFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEK 417

Query: 321 MQVEGEKPDRHTFSSILSM--SSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCG 378
           MQ  G +P+  T+  +LS    SG+VD  L +    +  +++         LI + +R G
Sbjct: 418 MQENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAG 477

Query: 379 AIVEARIIFEEMKLLKNVVS-WNAMIGGCASHG 410
            + +A+ +   +K+     S W+A++GGC +HG
Sbjct: 478 RLDDAKRLIHYLKIKPASGSVWSALLGGCNAHG 510



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 180/408 (44%), Gaps = 73/408 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+ G  +  ++ +AR LFD MP+R+VVSWN MISGY  +     ++EA  LF  MPERD 
Sbjct: 204 MVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRNH---RIDEALDLFMKMPERDI 260

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            + N +++G+ +  +++ A  LF+ MP RNVV+W  M++G+L+      A+  F  M   
Sbjct: 261 ASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLFSGM--- 317

Query: 121 DSASLSALVSGLIQN-----GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
                  L++G   N     G LD  + +   C                           
Sbjct: 318 -------LMAGTRPNQVTFLGALDACSDLAALC--------------------------- 343

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
            E +++   I   C        F+ +    ++++  YAK G++  AR++F+   E+D  S
Sbjct: 344 -EGKQVHQMI---C-----KTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLIS 394

Query: 236 WNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           WN +I+ Y H     EA  L+ KM      P+ +T+  ++S  +  G ++  L  F+ M 
Sbjct: 395 WNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMV 454

Query: 292 QKNLVS-----WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
               ++     +  +I  C      + A +L   +++   KP      S+ S   G  + 
Sbjct: 455 NDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKI---KP---ASGSVWSALLGGCNA 508

Query: 347 HLGMQIHQMVTKTVIPDVPINNALITM----YARCGAIVEARIIFEEM 390
           H    I  +  + ++   P N    T+    YA  G   EA  I  EM
Sbjct: 509 HGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEM 556


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/518 (38%), Positives = 306/518 (59%), Gaps = 52/518 (10%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL-QNGDVANAIEFFDRM 117
           + ++ N VI+ + ++G++  ALR+F SM  +  V+WN+M++G+  + G +  A + FDR+
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P  D                                     + +YN ++  Y     VE 
Sbjct: 64  PEPD-------------------------------------IFSYNIMLACYLHNADVES 86

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           AR  FD++PV            ++  SWN+MI  +++ G +  ARE+F  M  R++ SWN
Sbjct: 87  ARLFFDQMPV------------KDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWN 134

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
            MISGY+   D++ A  LF   P    + W AM++G+ + G +ELA  +F+ MP KNLV+
Sbjct: 135 AMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVT 194

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WN+MIAG   N   E  +KLF +M   G +P+  + SS+L   S +  L LG Q+HQ++ 
Sbjct: 195 WNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLIC 254

Query: 358 KTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           K+ +  ++    +L++MY +CG + +A  +F  M   K+VV+WNAMI G A HG   +AL
Sbjct: 255 KSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQ-KDVVTWNAMISGYAQHGAGEKAL 313

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
            LF  MR   + P +ITF++VLSAC HAG V+ G ++F SMV +YG+E + +H+  +VD+
Sbjct: 314 YLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDL 373

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           +GR G+L +A+DLIK MPF+P  A++G LLGACR+H N+ELA+ AA+ L+ ++PE++  Y
Sbjct: 374 LGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGY 433

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           V L N+YA + RWD    VR  MK N + K  GYSW++
Sbjct: 434 VQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIE 471



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/451 (28%), Positives = 220/451 (48%), Gaps = 94/451 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+ +++  ++  A ++F+ M  +  V+WN M++GY + RG   ++ AR LFD +PE D 
Sbjct: 11  VITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGK--IKVARQLFDRIPEPDI 68

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            ++N +++ Y    ++E A   F+ MP ++  SWN MISGF QNG +  A E F  MP R
Sbjct: 69  FSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVR 128

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +S S +A++SG +++G+LD A ++      R       V A+  +I G+ + G++E A K
Sbjct: 129 NSVSWNAMISGYVESGDLDLAKQLFEVAPVRS------VVAWTAMITGFMKFGKIELAEK 182

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE---------- 230
            F+++P+            +N+V+WN+MI  Y +     +  ++F++M+E          
Sbjct: 183 YFEEMPM------------KNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSL 230

Query: 231 ------------------------RDTFSWN-----TMISGYIHVLDMEEASNLFVKMPH 261
                                   +   SWN     +++S Y    D+E+A  LF+ MP 
Sbjct: 231 SSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQ 290

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            D +TWNAM+SGYAQ G                        AG       E A+ LF +M
Sbjct: 291 KDVVTWNAMISGYAQHG------------------------AG-------EKALYLFDKM 319

Query: 322 QVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPDVPIN-NALITMYARCG 378
           + EG KPD  TF ++LS    +G VDL +    + MV    +   P +   ++ +  R G
Sbjct: 320 RDEGMKPDWITFVAVLSACNHAGFVDLGIEY-FNSMVRDYGVEAKPDHYTCVVDLLGRGG 378

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            +VEA  + ++M    +   +  ++G C  H
Sbjct: 379 KLVEAVDLIKKMPFKPHSAIFGTLLGACRIH 409


>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 553

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/525 (38%), Positives = 313/525 (59%), Gaps = 21/525 (4%)

Query: 54  IMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG-DVANAIE 112
           ++  R  V  N  I+  A+ G++  A R+F++MP R+VVSWNA+++   + G D+  A  
Sbjct: 1   MLATRLLVRDNQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARR 60

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
            FD MP R+  S +++V+G + +G+LD A+    +   R       V ++N ++ G  + 
Sbjct: 61  LFDDMPSRNVISWNSVVAGCLAHGDLDAASAYFARAPRRN------VASWNAMLAGLVRL 114

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           GR+++A  LF ++P            +RN+VS+ +M+   A+ G+V  ARE+F+ M ER+
Sbjct: 115 GRMDDAWALFGEMP------------QRNVVSYTTMVDGLARRGEVARAREVFDAMPERN 162

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
             SW  MI+GY+     +EA  LF  MP  + +   AM++GY + G++E A   F  +P 
Sbjct: 163 LVSWAAMITGYVENAMFDEARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPV 222

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K+++SWN+MI G   N   E A+KL I M  EG KPD  T  +IL+  S +  L  G   
Sbjct: 223 KDVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRST 282

Query: 353 HQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H + TKT++       NAL+TMY++CG + E+ ++F  +K+ +++VSWN +I   A HG 
Sbjct: 283 HAVATKTMLESSTSFCNALMTMYSKCGNVGESELVFMNLKI-QDIVSWNTIIAAYAQHGK 341

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             +A+ LF  M +  ++P  IT +S+LSAC H G V +  + F  M ++Y I P  EH+A
Sbjct: 342 YQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSAEHYA 401

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            +VDI+GR G+LE A   IK MPFE ++ VWGALLGA + H NV+L ++AA+ L++ +  
Sbjct: 402 CVVDILGRAGQLEKACSYIKKMPFEAERNVWGALLGASKTHGNVQLGELAAKMLVQSDSV 461

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           +S PYV+L N+YA  G W + N VR  MK   +KK  GYSW + +
Sbjct: 462 SSGPYVMLSNIYAAAGMWGEVNRVRGQMKEKGVKKQPGYSWTEIA 506



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/450 (29%), Positives = 221/450 (49%), Gaps = 61/450 (13%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           I+   +  ++A AR++FD MP+RDVVSWN +++     R    L  AR LFD MP R+ +
Sbjct: 14  ITALARAGDVAAARRVFDAMPRRDVVSWNALLTALW--RAGRDLPAARRLFDDMPSRNVI 71

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           +WN+V++G    G+++ A   F   P RNV SWNAM++G ++ G + +A   F  MP R+
Sbjct: 72  SWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWALFGEMPQRN 131

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S + +V GL + GE+  A  V      R     +LV ++  +I GY +    +EARKL
Sbjct: 132 VVSYTTMVDGLARRGEVARAREVFDAMPER-----NLV-SWAAMITGYVENAMFDEARKL 185

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           F+ +P             +N+V+  +MI  Y K GDV SAR +F+ +  +D  SWN MI+
Sbjct: 186 FEAMP------------DKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMIT 233

Query: 242 GYIHVLDMEEASNLFVKM----PHPDTLTW------------------------------ 267
           GY+H    EEA  L + M      PD  T                               
Sbjct: 234 GYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLES 293

Query: 268 -----NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
                NA+++ Y++ GN+  +   F  +  +++VSWN++IA    +  Y+ AI LF +M+
Sbjct: 294 STSFCNALMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEME 353

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAI 380
             G  P+  T  S+LS    +  ++  +++  +++    + P       ++ +  R G +
Sbjct: 354 TRGLIPNDITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSAEHYACVVDILGRAGQL 413

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            +A    ++M        W A++G   +HG
Sbjct: 414 EKACSYIKKMPFEAERNVWGALLGASKTHG 443



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 211/440 (47%), Gaps = 58/440 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++G V+   M  A  LF EMPQR+VVS+  M+ G ++ RG   +  AR +FD MPER+ 
Sbjct: 107 MLAGLVRLGRMDDAWALFGEMPQRNVVSYTTMVDG-LARRGE--VARAREVFDAMPERNL 163

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  +I+GY +    +EA +LF +MP +NVV+  AMI+G+ ++GDV +A   FD +P +
Sbjct: 164 VSWAAMITGYVENAMFDEARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVK 223

Query: 121 DSASLSALVSGLIQNGELDEAAR---VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           D  S +A+++G + NG  +EA +   ++ + G + D    +        +   ++GR   
Sbjct: 224 DVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTH 283

Query: 178 A---RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
           A   + + +     C                N+++  Y+K G+V  +  +F  +  +D  
Sbjct: 284 AVATKTMLESSTSFC----------------NALMTMYSKCGNVGESELVFMNLKIQDIV 327

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
           SWNT+I+ Y      ++A  LF +M      P+ +T  +M+S    +G +  +L+ F  M
Sbjct: 328 SWNTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLELFDLM 387

Query: 291 PQKNLVSWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
             K  +S ++    C  +        E A     +M  E E   R+ + ++L    G   
Sbjct: 388 SSKYAISPSAEHYACVVDILGRAGQLEKACSYIKKMPFEAE---RNVWGALL----GASK 440

Query: 346 LHLGMQIHQMVTKTVIPDVPINNA----LITMYARCGAIVEARIIFEEMKLLKNV----- 396
            H  +Q+ ++  K ++    +++     L  +YA  G   E   +  +MK  K V     
Sbjct: 441 THGNVQLGELAAKMLVQSDSVSSGPYVMLSNIYAAAGMWGEVNRVRGQMK-EKGVKKQPG 499

Query: 397 VSW-------NAMIGGCASH 409
            SW       N  +GG ASH
Sbjct: 500 YSWTEIANKVNMFVGGDASH 519


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/514 (40%), Positives = 304/514 (59%), Gaps = 53/514 (10%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN-GDVANAIEFFDRMPGRDS 122
           N +I+   ++G+++ ALR+F+ M A+N ++WN+++ G  ++   +  A + FD +P  D+
Sbjct: 65  NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDT 124

Query: 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
            S                                     YN ++  Y +    E+A+  F
Sbjct: 125 FS-------------------------------------YNIMLSCYVRNVNFEKAQSFF 147

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
           D++P             ++  SWN+MI  YA+ G++  ARE+F  M+E++  SWN MISG
Sbjct: 148 DRMPF------------KDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISG 195

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSM 301
           YI   D+E+AS+ F   P    + W AM++GY +   +ELA   FK M   KNLV+WN+M
Sbjct: 196 YIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAM 255

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TV 360
           I+G   N   E  +KLF  M  EG +P+    SS L   S +  L LG QIHQ+V+K T+
Sbjct: 256 ISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTL 315

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
             DV    +LI+MY +CG + +A  +FE MK  K+VV+WNAMI G A HG A +AL LF+
Sbjct: 316 CNDVTALTSLISMYCKCGELGDAWKLFEVMKK-KDVVAWNAMISGYAQHGNADKALCLFR 374

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M   K+ P +ITF++VL AC HAGLV  G  +F+SMV +Y +EP+ +H+  +VD++GR 
Sbjct: 375 EMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRA 434

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G+LE+A+ LI+ MPF P  AV+G LLGACRVH NVELA+ AAE L+++  +N+  YV L 
Sbjct: 435 GKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLA 494

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N+YA   RW+D   VR  MK +N+ K  GYSW++
Sbjct: 495 NIYASKNRWEDVARVRKRMKESNVVKVPGYSWIE 528



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 198/418 (47%), Gaps = 59/418 (14%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGY 70
           M +A +LFDE+P+ D  S+N+M+S Y+  R   F E+A+  FD MP +D  +WNT+I+GY
Sbjct: 109 MMEAHQLFDEIPEPDTFSYNIMLSCYV--RNVNF-EKAQSFFDRMPFKDAASWNTMITGY 165

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
           A+ GEME+A  LF SM  +N VSWNAMISG+++ GD+  A  FF   P R   + +A+++
Sbjct: 166 ARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMIT 225

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           G ++  ++ E A  + K        ++LV  +N +I GY +  R E+  KLF        
Sbjct: 226 GYMKAKKV-ELAEAMFK---DMTVNKNLV-TWNAMISGYVENSRPEDGLKLF-------- 272

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE----QMLERDTFSWNTMISGYIHV 246
           R       + N    +S ++  ++   +   R+I +      L  D  +  ++IS Y   
Sbjct: 273 RAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKC 332

Query: 247 LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
            ++ +A  LF  M   D + WNAM+SGYAQ GN + AL  F+ M    +           
Sbjct: 333 GELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKI----------- 381

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDV 364
                               +PD  TF ++L   +    +++GM   + + +   V P  
Sbjct: 382 --------------------RPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQP 421

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG------FATEAL 416
                ++ +  R G + EA  +   M    +   +  ++G C  H       FA E L
Sbjct: 422 DHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKL 479



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 134/317 (42%), Gaps = 41/317 (12%)

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA------------------------ 269
           F  N +I+  +   D++ A  +F  M   +T+TWN+                        
Sbjct: 62  FPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPE 121

Query: 270 --------MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
                   M+S Y +  N E A  FF RMP K+  SWN+MI G     + E A +LF  M
Sbjct: 122 PDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSM 181

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIV 381
             + E        S  +M SG ++     +         +  V    A+IT Y +   + 
Sbjct: 182 MEKNE-------VSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVE 234

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
            A  +F++M + KN+V+WNAMI G   +    + L+LF++M    + P      S L  C
Sbjct: 235 LAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGC 294

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
           +    ++ GRQ    +V++  +   +    SL+ +  + G L DA  L + M  + D   
Sbjct: 295 SELSALQLGRQ-IHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK-KKDVVA 352

Query: 502 WGALLGACRVHNNVELA 518
           W A++     H N + A
Sbjct: 353 WNAMISGYAQHGNADKA 369



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 127/305 (41%), Gaps = 44/305 (14%)

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQM--------------------------QVEG 325
           Q  +   N +IA C  + D +GA+++F  M                          Q+  
Sbjct: 58  QDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFD 117

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARI 385
           E P+  TFS  + +S  + +++   +      +    D    N +IT YAR G + +AR 
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFE-KAQSFFDRMPFKDAASWNTMITGYARRGEMEKARE 176

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT--YITFISVLSACAH 443
           +F  M + KN VSWNAMI G    G      +L K+   FKV P    + + ++++    
Sbjct: 177 LFYSM-MEKNEVSWNAMISGYIECG------DLEKASHFFKVAPVRGVVAWTAMITGYMK 229

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE---PDKA 500
           A  VE     FK M     +   +  + +++     + R ED + L + M  E   P+ +
Sbjct: 230 AKKVELAEAMFKDMT----VNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSS 285

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENS-TPYVLLYNMYADVGRWDDANEVRLLM 559
              + L  C   + ++L +   + + K    N  T    L +MY   G   DA ++  +M
Sbjct: 286 GLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVM 345

Query: 560 KSNNI 564
           K  ++
Sbjct: 346 KKKDV 350


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/598 (35%), Positives = 320/598 (53%), Gaps = 75/598 (12%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +I  Y      G LE+ R +FD MP+R+  TWN+V++G  K G ++EA  LF SMP R
Sbjct: 59  NRLIDAY---SKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPER 115

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGR-------DSASLSALVSGLIQNGELDEAA 142
           +  +WN+M+SGF Q+     A+ +F  M            AS+ +  SGL    +  +  
Sbjct: 116 DQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVH 175

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
            ++ K     D     V   + L+  Y + G V +A+++FD++              RN+
Sbjct: 176 SLIAKSPFLSD-----VYIGSALVDMYSKCGNVNDAQRVFDEMG------------DRNV 218

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLE-------------------------------- 230
           VSWNS+I C+ + G  V A ++F+ MLE                                
Sbjct: 219 VSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGR 278

Query: 231 --------RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
                    D    N  +  Y     ++EA  +F  MP  + +   +M+SGYA   + + 
Sbjct: 279 VVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA 338

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F +M ++N+VSWN++IAG   N + E A+ LF  ++ E   P  ++F++IL   + 
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACAD 398

Query: 343 IVDLHLGMQIHQMVTKTVIP-------DVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           + +LHLGMQ H  V K           D+ + N+LI MY +CG + E  ++F +M + ++
Sbjct: 399 LAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERD 457

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
            VSWNAMI G A +G+  EALELF+ M      P +IT I VLSAC HAG VEEGR +F 
Sbjct: 458 CVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFS 517

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
           SM  ++G+ P  +H+  +VD++GR G LE+A  +I+ MP +PD  +WG+LL AC+VH N+
Sbjct: 518 SMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNI 577

Query: 516 ELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            L +  AE L++VEP NS PYVLL NMYA++G+W+D   VR  M+   + K  G SW+
Sbjct: 578 TLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWI 635



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 183/346 (52%), Gaps = 11/346 (3%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           + F  N +I  Y     +E+   +F KMP  +  TWN++V+G  ++G L+ A   F+ MP
Sbjct: 54  EIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMP 113

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           +++  +WNSM++G   +   E A+  F  M  EG   + ++F+S+LS  SG+ D++ G+Q
Sbjct: 114 ERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQ 173

Query: 352 IHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +H ++ K+  + DV I +AL+ MY++CG + +A+ +F+EM   +NVVSWN++I     +G
Sbjct: 174 VHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMG-DRNVVSWNSLITCFEQNG 232

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
            A EAL++F+ M   +V P  +T  SV+SACA    ++ G++    +V    +   I   
Sbjct: 233 PAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILS 292

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM--KV 528
            + VD+  +  R+++A  +   MP     A    + G          A   A  LM  K+
Sbjct: 293 NAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMA------ASTKAARLMFTKM 346

Query: 529 EPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
              N   +  L   Y   G  ++A  +  L+K  ++  PT YS+ +
Sbjct: 347 AERNVVSWNALIAGYTQNGENEEALSLFCLLKRESV-CPTHYSFAN 391


>gi|147861249|emb|CAN79322.1| hypothetical protein VITISV_018985 [Vitis vinifera]
          Length = 932

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 221/578 (38%), Positives = 328/578 (56%), Gaps = 58/578 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+ Y+K  E+ KA KLF  MP R +V+ + MI GY     +G ++ A+ +FD M + + 
Sbjct: 12  MITAYLKNNELRKAEKLFQTMPDRTIVAESAMIDGYAK---AGLMDSAQKVFDAMIDTNV 68

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +W ++ISGY + G++ +A +LF+ MPA+NVVSW  M+ G+ +NG +  A   F++MP +
Sbjct: 69  FSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEK 128

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           ++ S +A++   + NG  DEA ++  +   R       + ++NT+I G     RV EA K
Sbjct: 129 NTISWTAMMKSYVDNGRTDEALKLFHEMPQRN------LYSWNTMISGCLDGKRVNEAFK 182

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF  +P+            RN VSW  M+   A+ G    ARE F+QM  +D  +WN MI
Sbjct: 183 LFHLMPL------------RNAVSWTIMVSGLARNGFTKLAREYFDQMPNKDIAAWNAMI 230

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           + Y+    + EAS LF  M   + +TWNAM+ GYA+                        
Sbjct: 231 TAYVDECLIVEASELFNLMTERNIVTWNAMIDGYAR------------------------ 266

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKT 359
                    D E A+K  I M     +P+  T + IL+   G+++L   MQ H + +   
Sbjct: 267 ------HRPDGE-AMKHLILMLRSCIRPNETTMTIILTSCWGMLEL---MQAHALAIVVG 316

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              +  ++NALITMY+R G I  +RI FE +K  K+VVSW AM+     HG    AL +F
Sbjct: 317 CECETSLSNALITMYSRIGDISSSRIAFESLK-AKDVVSWTAMLLAFTYHGHGDHALHVF 375

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M      P  ITF+ VLSAC+HAGLV++G++ F SM   YG+EPR EH++ LVDI+GR
Sbjct: 376 GHMLKSGTKPDEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGR 435

Query: 480 HGRLEDAMDLIKGMP-FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
            G++ +AMD++  MP  E D AV GALLGACR+H NVE+A    + L++++P +S  YVL
Sbjct: 436 AGQVHEAMDVVWKMPECERDGAVLGALLGACRLHGNVEMADYIGQKLIELQPNSSGGYVL 495

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           L N++A  G WD+  EVR  MK  N++K  G+S ++F 
Sbjct: 496 LANVFAARGNWDEFAEVRKKMKDRNVRKVPGFSQIEFQ 533



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 192/398 (48%), Gaps = 31/398 (7%)

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           MP  D+ S +A+++  ++N EL +A ++      R       + A + +I GY + G ++
Sbjct: 1   MPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPDRT------IVAESAMIDGYAKAGLMD 54

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            A+K+FD +               N+ SW S+I  Y + G V  A ++F+QM  ++  SW
Sbjct: 55  SAQKVFDAM------------IDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSW 102

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
            TM+ GY     +++A ++F +MP  +T++W AM+  Y   G  + AL  F  MPQ+NL 
Sbjct: 103 TTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFHEMPQRNLY 162

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SWN+MI+GC   K    A KLF  M      P R+  S  + M SG+          +  
Sbjct: 163 SWNTMISGCLDGKRVNEAFKLFHLM------PLRNAVSWTI-MVSGLARNGFTKLAREYF 215

Query: 357 TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
            +    D+   NA+IT Y     IVEA  +F  M   +N+V+WNAMI G A H    EA+
Sbjct: 216 DQMPNKDIAAWNAMITAYVDECLIVEASELFNLMT-ERNIVTWNAMIDGYARHRPDGEAM 274

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
           +    M    + P   T   +L++C   G++E  + H  ++V   G E       +L+ +
Sbjct: 275 KHLILMLRSCIRPNETTMTIILTSC--WGMLELMQAHALAIV--VGCECETSLSNALITM 330

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
             R G +  +    + +  + D   W A+L A   H +
Sbjct: 331 YSRIGDISSSRIAFESLKAK-DVVSWTAMLLAFTYHGH 367


>gi|255575746|ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531775|gb|EEF33594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/580 (35%), Positives = 340/580 (58%), Gaps = 21/580 (3%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+ G     ++ +A+ LF+EMP R+VVSWN MI G I +   G LE AR +FD  P ++ 
Sbjct: 78  MLCGLADAGKICEAKSLFEEMPDRNVVSWNAMIVGLIRN---GDLEAARMVFDESPVKNA 134

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN +I+GYA+ G MEEA  LF+ M  RNV++W +M+SG+ + G+V      F  MP R
Sbjct: 135 ASWNGMIAGYAENGRMEEARALFDEMEDRNVITWTSMVSGYCRAGEVEEGYHLFRTMPKR 194

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR----AYNTLIVGYGQRGRVE 176
           +  S +A++ G   NG  ++A  + ++     D   ++      AY    +G+ + G+  
Sbjct: 195 NIVSWTAMIGGFTWNGFYEDALLLFLEMKRGADITPNIETFISLAYACAGLGFHRLGKQL 254

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-S 235
            AR + + +    D  + + R  +       +I  Y+  G +  A  IF +        S
Sbjct: 255 HARLITEGL----DNDDYDGRLSK------GLICMYSSIGFMDYAHYIFNKNSNYYVVQS 304

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
            N MI+GYI +  +++A NLF  MP  D +TW +M+ GY  IGN+  A   F  MP+K+ 
Sbjct: 305 CNYMINGYIRIGLLDKAQNLFDTMPVRDKITWTSMIDGYLVIGNVSEACSLFLYMPEKDA 364

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           V+W +MI+G   N+ +  A  LF +M  +G +P   T++ +   +  +  L  G Q+H M
Sbjct: 365 VAWTTMISGHVRNELFAEATYLFSEMLTQGVRPLSSTYAILFGAAGAVASLDQGRQLHAM 424

Query: 356 VTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           +TKT+   D+ + N+LI+MYA+CG I  A  IF +M +  +++SWN+MI G + HG A E
Sbjct: 425 LTKTLSDNDLILENSLISMYAKCGEIRNAYRIFSQM-ISHDLISWNSMIMGFSHHGLANE 483

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           ALE+F++M      P  +TF+ VLSAC+HAGL+ +G + F +M + + ++P +EH+  +V
Sbjct: 484 ALEVFEAMVDSGTHPNSVTFLGVLSACSHAGLINQGWEIFNAMSDVFAVQPGLEHYICMV 543

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV-HNNVELAQVAAEALMKVEPENS 533
           +++GR G+L++A +LI G+P E + A+WGALLG C     N ++A+ AA  +++++P N+
Sbjct: 544 NLLGRAGKLKEAEELILGLPLERNHAIWGALLGVCSFSEKNADIAKRAATRILELDPLNA 603

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
             +VLL N+YA  G+  + +++R  M    +KK  G SW+
Sbjct: 604 PAHVLLCNIYAASGQHIEEHKLRKEMGLKGVKKVPGCSWI 643



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/510 (29%), Positives = 243/510 (47%), Gaps = 62/510 (12%)

Query: 21  MPQRD----VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEM 76
           MP+R     +V W  ++S Y  SR SGF++EAR LFDIMPER+ V++N ++SG  + G +
Sbjct: 1   MPKRSPLSRIVYWTSLLSKY--SR-SGFVDEARALFDIMPERNAVSYNALLSGLLQCGRL 57

Query: 77  EEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG 136
            EA++LF  MP RNVVSW +M+ G    G +  A   F+ MP R+  S +A++ GLI+NG
Sbjct: 58  SEAMKLFEEMPERNVVSWTSMLCGLADAGKICEAKSLFEEMPDRNVVSWNAMIVGLIRNG 117

Query: 137 ELDEAARVLVKCGSRCDGGEDLVR---AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
           +L EAAR++          E  V+   ++N +I GY + GR+EEAR LFD++        
Sbjct: 118 DL-EAARMVFD--------ESPVKNAASWNGMIAGYAENGRMEEARALFDEME------- 161

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEAS 253
                 RN+++W SM+  Y +AG+V     +F  M +R+  SW  MI G+      E+A 
Sbjct: 162 -----DRNVITWTSMVSGYCRAGEVEEGYHLFRTMPKRNIVSWTAMIGGFTWNGFYEDAL 216

Query: 254 NLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
            LF++M       P+  T+ ++    A +G   L      R+  + L            N
Sbjct: 217 LLFLEMKRGADITPNIETFISLAYACAGLGFHRLGKQLHARLITEGL-----------DN 265

Query: 309 KDYEGAI-KLFIQM-----------QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
            DY+G + K  I M            +  +  + +   S   M +G + + L  +   + 
Sbjct: 266 DDYDGRLSKGLICMYSSIGFMDYAHYIFNKNSNYYVVQSCNYMINGYIRIGLLDKAQNLF 325

Query: 357 TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
               + D     ++I  Y   G + EA  +F  M   K+ V+W  MI G   +    EA 
Sbjct: 326 DTMPVRDKITWTSMIDGYLVIGNVSEACSLFLYMP-EKDAVAWTTMISGHVRNELFAEAT 384

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
            LF  M +  V P   T+  +  A      +++GRQ   +M+ +   +  +    SL+ +
Sbjct: 385 YLFSEMLTQGVRPLSSTYAILFGAAGAVASLDQGRQ-LHAMLTKTLSDNDLILENSLISM 443

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             + G + +A  +   M    D   W +++
Sbjct: 444 YAKCGEIRNAYRIFSQM-ISHDLISWNSMI 472


>gi|357482291|ref|XP_003611431.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512766|gb|AES94389.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 735

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/611 (34%), Positives = 346/611 (56%), Gaps = 48/611 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+S Y++     +A++ FD+MP+R+VVSW  M+SGY    G G++++AR +FD MPER+ 
Sbjct: 109 MLSAYLQSGMTRQAKRFFDDMPERNVVSWTAMLSGYA---GLGWIDDARKVFDEMPERNV 165

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN+++ G  + G++EEA ++F+  P +NVVSWNAMI G+++NG + +A + FD++  R
Sbjct: 166 VSWNSMVVGLIRNGDLEEARKVFDDTPDKNVVSWNAMIEGYVENGRMDDAKDLFDQIECR 225

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  + ++++SG  + G+++EA R+           E  V ++  +I G+   G   EA  
Sbjct: 226 NVITWTSMISGYCRVGDVNEAFRLFQIMP------EKNVVSWTAMIGGFAWNGFYREALL 279

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVS---------------------WN----------SMI 209
           LF  +    D       F   + +                     W           S++
Sbjct: 280 LFLDMMTLSDAKPNEETFVSLVYACAGMGFPCLGKQLHAQMILNRWKLDDYDCRLGRSLV 339

Query: 210 MCYAKAGDVVSAREIFE-QMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN 268
             Y+  G + SAR +FE  M   D  S+N+MI+GY+    + +A  LF  +P  + + W 
Sbjct: 340 RMYSVCGLMDSARSVFEGDMKNCDDQSFNSMINGYVQAGQLHKAQELFDTVPIRNKIAWT 399

Query: 269 AMVSGYAQIGNLELALDFFKRMPQ--KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
            M+SGY   G +  A + F  MP   K+ ++W  MI G   N+    AI LF +M  +G 
Sbjct: 400 CMISGYLSAGQVLKASNLFDDMPDSDKDSIAWTLMIYGYVQNELIAEAINLFAEMMAQGA 459

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP---DVPINNALITMYARCGAIVEA 383
            P   T++ +      +  L LG Q+H M  KT+     DV + N+LI+MYA+CG I +A
Sbjct: 460 SPINSTYAVLFGAVGSVAYLDLGWQLHAMQLKTIYEYEYDVYLENSLISMYAKCGEIEDA 519

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
             IF  M   ++ +SWN+MI G + HG A EAL ++++M  F V P  +TF+ VL+ACAH
Sbjct: 520 YRIFSNMNC-RDKISWNSMIMGLSDHGRANEALNMYETMLEFGVYPDAVTFLGVLTACAH 578

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           AG V++G + F  M+N+Y ++P +EH+ S+++I+GR GR++DA + +  +P EP+  +WG
Sbjct: 579 AGFVDKGCELFSVMLNDYALQPGLEHYVSIINILGRAGRVKDAEEFVLRLPVEPNHTIWG 638

Query: 504 ALLGACRV-HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
           AL+G C +   + ++A+ AA  L++++P N+  +V L N+YA   R  +   +R  M+  
Sbjct: 639 ALIGVCGLSKTDADIARRAATRLLELDPLNAPGHVTLCNIYAANDRHLEETSLRREMRMK 698

Query: 563 NIKKPTGYSWV 573
            ++K  G SW+
Sbjct: 699 GVRKAPGCSWI 709



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 168/595 (28%), Positives = 280/595 (47%), Gaps = 73/595 (12%)

Query: 5   YVKRREMAKARKLFDEMPQRD----VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           Y+    + +AR +    P  +    VV W  M++ Y      G++E+AR LFDIMP R+ 
Sbjct: 47  YLTNGFLHEARTILHSFPSGNIHSRVVHWTSMLTNYAKH---GYVEQARNLFDIMPHRNI 103

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           VT+N ++S Y ++G   +A R F+ MP RNVVSW AM+SG+   G + +A + FD MP R
Sbjct: 104 VTYNAMLSAYLQSGMTRQAKRFFDDMPERNVVSWTAMLSGYAGLGWIDDARKVFDEMPER 163

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +++V GLI+NG+L+EA +V        D  +  V ++N +I GY + GR+++A+ 
Sbjct: 164 NVVSWNSMVVGLIRNGDLEEARKVFD------DTPDKNVVSWNAMIEGYVENGRMDDAKD 217

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD+I              RN+++W SMI  Y + GDV  A  +F+ M E++  SW  MI
Sbjct: 218 LFDQIEC------------RNVITWTSMISGYCRVGDVNEAFRLFQIMPEKNVVSWTAMI 265

Query: 241 SGYIHVLDMEEASNLFVKM-----PHPDTLTWNAMVSGYAQIGNLELA------------ 283
            G+       EA  LF+ M       P+  T+ ++V   A +G   L             
Sbjct: 266 GGFAWNGFYREALLLFLDMMTLSDAKPNEETFVSLVYACAGMGFPCLGKQLHAQMILNRW 325

Query: 284 -LDFFKRMPQKNLVSWNSMIAGCETNKD-YEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            LD +     ++LV   S+    ++ +  +EG +K            D  +F+   SM +
Sbjct: 326 KLDDYDCRLGRSLVRMYSVCGLMDSARSVFEGDMK----------NCDDQSFN---SMIN 372

Query: 342 GIVDLHLGMQIHQMVTKTVIPDVPINN-----ALITMYARCGAIVEARIIFEEM-KLLKN 395
           G V      Q+H+   + +   VPI N      +I+ Y   G +++A  +F++M    K+
Sbjct: 373 GYVQ---AGQLHK--AQELFDTVPIRNKIAWTCMISGYLSAGQVLKASNLFDDMPDSDKD 427

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HF 454
            ++W  MI G   +    EA+ LF  M +    P   T+  +  A      ++ G Q H 
Sbjct: 428 SIAWTLMIYGYVQNELIAEAINLFAEMMAQGASPINSTYAVLFGAVGSVAYLDLGWQLHA 487

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
             +   Y  E  +    SL+ +  + G +EDA  +   M    DK  W +++     H  
Sbjct: 488 MQLKTIYEYEYDVYLENSLISMYAKCGEIEDAYRIFSNMNCR-DKISWNSMIMGLSDHGR 546

Query: 515 VELAQVAAEALMK--VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
              A    E +++  V P+  T ++ +    A  G  D   E+  +M ++   +P
Sbjct: 547 ANEALNMYETMLEFGVYPDAVT-FLGVLTACAHAGFVDKGCELFSVMLNDYALQP 600



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 168/330 (50%), Gaps = 19/330 (5%)

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           ++ Y   G + EAR +    P       GN+  +  +V W SM+  YAK G V  AR +F
Sbjct: 44  LLHYLTNGFLHEARTILHSFP------SGNIHSR--VVHWTSMLTNYAKHGYVEQARNLF 95

Query: 226 EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
           + M  R+  ++N M+S Y+      +A   F  MP  + ++W AM+SGYA +G ++ A  
Sbjct: 96  DIMPHRNIVTYNAMLSAYLQSGMTRQAKRFFDDMPERNVVSWTAMLSGYAGLGWIDDARK 155

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F  MP++N+VSWNSM+ G   N D E A K+F       + PD++  S   +M  G V+
Sbjct: 156 VFDEMPERNVVSWNSMVVGLIRNGDLEEARKVF------DDTPDKNVVSWN-AMIEGYVE 208

Query: 346 LHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
                    +  +    +V    ++I+ Y R G + EA  +F+ M   KNVVSW AMIGG
Sbjct: 209 NGRMDDAKDLFDQIECRNVITWTSMISGYCRVGDVNEAFRLFQIMP-EKNVVSWTAMIGG 267

Query: 406 CASHGFATEALELFKSMRSFK-VLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGI 463
            A +GF  EAL LF  M +     P   TF+S++ ACA  G    G+Q H + ++N + +
Sbjct: 268 FAWNGFYREALLLFLDMMTLSDAKPNEETFVSLVYACAGMGFPCLGKQLHAQMILNRWKL 327

Query: 464 EPRIEHFA-SLVDIVGRHGRLEDAMDLIKG 492
           +        SLV +    G ++ A  + +G
Sbjct: 328 DDYDCRLGRSLVRMYSVCGLMDSARSVFEG 357


>gi|449530420|ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 719

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/574 (34%), Positives = 345/574 (60%), Gaps = 17/574 (2%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+ Y +R  + +A +LF  MPQR+ VS+  MI+G++ +   G  + A  L    P    
Sbjct: 123 MITAYHRRNMVDEAFELFSSMPQRNSVSYATMITGFVHA---GMFDMAEKLHREKPV--I 177

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+ N +I+GY+K G +E+A+R+F+ M  ++VVSW++MISG  + G +  A + FD+MP R
Sbjct: 178 VSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDR 237

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  + + ++ G ++   L +    ++    R +G E        L+   G   R  E  +
Sbjct: 238 NVVTWTLMIDGYMKMNFLKDG--FILFLNMRREGVEVNATTLTVLLEACGSFDRYGEGIQ 295

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +   +         ++ F  +    NS+I  Y++   + +A + F+ M+++D  +WN++I
Sbjct: 296 IHGLVL--------SLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLI 347

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+   ++E+A  LF  MP  D ++W  ++ G+A  G ++  +  F+ MP+K+ ++W +
Sbjct: 348 TGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAWTA 407

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           +I+G  + ++YE A   FI+M     KP+  T S +LS  + +  L+ G+QIH +VTK  
Sbjct: 408 VISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMS 467

Query: 361 IP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
           +  D+ I N+L++MY++CG + +A  +F  +K+  NVV++N +I G A +G   EALE+F
Sbjct: 468 MENDLSIQNSLVSMYSKCGNVDDALKMFYYIKV-PNVVAYNTIITGLAQNGLGKEALEIF 526

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M+   ++P +ITF+ VLSAC H GLVEEGR++F  M + Y I+P  +H+A +VD++ R
Sbjct: 527 TKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACMVDLLCR 586

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G  ++A+ L+  MPF+P + VWGA+LGA   H  +++A++AA+ L ++EP ++TPYV+L
Sbjct: 587 AGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQNLFELEPNSATPYVIL 646

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            N+++  G       +RL+ KS  +KK  G SW+
Sbjct: 647 SNLHSISGDERKHELIRLMKKSRGLKKSPGCSWI 680


>gi|449467189|ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Cucumis sativus]
          Length = 711

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/574 (34%), Positives = 345/574 (60%), Gaps = 17/574 (2%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+ Y +R  + +A +LF  MPQR+ VS+  MI+G++ +   G  + A  L    P    
Sbjct: 115 MITAYHRRNMVDEAFELFSSMPQRNSVSYATMITGFVHA---GMFDMAEKLHREKPV--I 169

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+ N +I+GY+K G +E+A+R+F+ M  ++VVSW++MISG  + G +  A + FD+MP R
Sbjct: 170 VSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDR 229

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  + + ++ G ++   L +   + +    R +G E        L+   G   R  E  +
Sbjct: 230 NVVTWTLMIDGYMKMNFLKDGFILFLNM--RREGVEVNATTLTVLLEACGSFDRYGEGIQ 287

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +   +         ++ F  +    NS+I  Y++   + +A + F+ M+++D  +WN++I
Sbjct: 288 IHGLVL--------SLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLI 339

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+   ++E+A  LF  MP  D ++W  ++ G+A  G ++  +  F+ MP+K+ ++W +
Sbjct: 340 TGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAWTA 399

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           +I+G  + ++YE A   FI+M     KP+  T S +LS  + +  L+ G+QIH +VTK  
Sbjct: 400 VISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMS 459

Query: 361 IP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
           +  D+ I N+L++MY++CG + +A  +F  +K+  NVV++N +I G A +G   EALE+F
Sbjct: 460 MENDLSIQNSLVSMYSKCGNVDDALKMFYYIKV-PNVVAYNTIITGLAQNGLGKEALEIF 518

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M+   ++P +ITF+ VLSAC H GLVEEGR++F  M + Y I+P  +H+A +VD++ R
Sbjct: 519 TKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACMVDLLCR 578

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G  ++A+ L+  MPF+P + VWGA+LGA   H  +++A++AA+ L ++EP ++TPYV+L
Sbjct: 579 AGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQNLFELEPNSATPYVIL 638

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            N+++  G       +RL+ KS  +KK  G SW+
Sbjct: 639 SNLHSISGDERKHELIRLMKKSRGLKKSPGCSWI 672


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/593 (36%), Positives = 323/593 (54%), Gaps = 86/593 (14%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G+ E+AR +FD MP+R+  ++N V+S   K G+++EA  +F SMP  +  SWNAM+SGF 
Sbjct: 68  GYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFA 127

Query: 103 QNGDVANAIEFFDRMPGRD--------SASLSALVSGL------IQNGELDEAARVLVKC 148
           Q+     A+ FF  M   D         ++LSA  +GL      IQ   L   +R L+  
Sbjct: 128 QHDRFEEALRFFVDMHSEDFVLNEYSFGSALSA-CAGLTDLNMGIQIHALISKSRYLLD- 185

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
                     V   + L+  Y + G V  A++ FD + V            RNIVSWNS+
Sbjct: 186 ----------VYMGSALVDMYSKCGVVACAQRAFDGMAV------------RNIVSWNSL 223

Query: 209 IMCYAKAGDVVSAREIFEQMLE-----------------------------------RDT 233
           I CY + G    A E+F  M++                                   RD 
Sbjct: 224 ITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDK 283

Query: 234 FS-----WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
           +       N ++  Y     + EA  +F +MP  + ++  +MV GYA+  +++ A   F 
Sbjct: 284 YRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFS 343

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            M +KN+VSWN++IAG   N + E A++LF+ ++ E   P  +TF ++L+  + + DL L
Sbjct: 344 NMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKL 403

Query: 349 GMQIHQMVTKTVI-------PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           G Q H  + K           D+ + N+LI MY +CG + +  ++FE M + ++VVSWNA
Sbjct: 404 GRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERM-VERDVVSWNA 462

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI G A +G+ T ALE+F+ M      P ++T I VLSAC+HAGLVEEGR++F SM  E 
Sbjct: 463 MIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTEL 522

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           G+ P  +HF  +VD++GR G L++A DLI+ MP +PD  VWG+LL AC+VH N+EL +  
Sbjct: 523 GLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYV 582

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           AE LM+++P NS PYVLL NMYA++GRW D   VR  M+   + K  G SW++
Sbjct: 583 AEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIE 635



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 182/352 (51%), Gaps = 11/352 (3%)

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           I +     + F  N ++  Y      E+A  +F +MP  +T ++NA++S   + G L+ A
Sbjct: 45  IIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEA 104

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
            + FK MP+ +  SWN+M++G   +  +E A++ F+ M  E    + ++F S LS  +G+
Sbjct: 105 FNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGL 164

Query: 344 VDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
            DL++G+QIH +++K+  + DV + +AL+ MY++CG +  A+  F+ M  ++N+VSWN++
Sbjct: 165 TDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMA-VRNIVSWNSL 223

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I     +G A +ALE+F  M    V P  IT  SV+SACA    + EG Q    +V    
Sbjct: 224 ITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDK 283

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
               +    +LVD+  +  R+ +A  +   MP     +    + G  R       A V A
Sbjct: 284 YRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARA------ASVKA 337

Query: 523 EALM--KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
             LM   +  +N   +  L   Y   G  ++A  + LL+K  +I  PT Y++
Sbjct: 338 ARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESI-WPTHYTF 388


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/541 (37%), Positives = 311/541 (57%), Gaps = 33/541 (6%)

Query: 40  RGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMIS 99
           RGS  L   R L D          N  IS  A+ G++  A R+F++MP R+VVSWNA+++
Sbjct: 5   RGSASLAARRLLRD----------NQRISALARAGDVAAARRVFDAMPHRDVVSWNALLT 54

Query: 100 GFLQNG--DVANAIEFFDR-MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
              + G   +  A   FD  MP RD  S +++++G + +G+LD A+        R     
Sbjct: 55  ALWRAGRHHLPAARRLFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRN---- 110

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
             V  +N ++ G  + GR ++A +LF ++P            KRN+VS+ +M+   A+ G
Sbjct: 111 --VATWNAMLAGLLRLGRADDADRLFGEMP------------KRNVVSYTTMVDGLARRG 156

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQ 276
           +V  ARE+F+ M +R+  SW  MISGY+      EA+ LF  MP  + +   AM++ Y +
Sbjct: 157 EVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLFEAMPEKNVVACTAMITSYCK 216

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            G++E A   F  +  K+++SWN+MIAG   N   E A++L   M  EG KPD  T  ++
Sbjct: 217 QGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAV 276

Query: 337 LSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           L+  S +  L  G   H +  K ++   +  +NAL+TMY++CG + E+ ++F  ++  K+
Sbjct: 277 LTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRT-KD 335

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           +VSWN +I   A HG   + + LF  M    ++P  ITF+SVLSAC H G V+   + F 
Sbjct: 336 IVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASLKLFD 395

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
            M ++Y I PR EH+A +VDI+ R G+LE A   IK MP E +K VWG+LLGAC++H NV
Sbjct: 396 LMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKDMPLEAEKNVWGSLLGACQMHGNV 455

Query: 516 ELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           +L ++AA+ L++ + E+S PYV+L N+YA  G W   N+VR  MK   +KK  GYSW + 
Sbjct: 456 QLGELAAKMLVQSDSESSGPYVILSNIYAAAGMWGQVNQVRGQMKERGVKKQPGYSWTEI 515

Query: 576 S 576
           +
Sbjct: 516 A 516



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/451 (31%), Positives = 222/451 (49%), Gaps = 61/451 (13%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD-IMPERDC 60
           IS   +  ++A AR++FD MP RDVVSWN +++    + G   L  AR LFD  MP RD 
Sbjct: 22  ISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRA-GRHHLPAARRLFDEAMPSRDV 80

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN++I+G    G+++ A   F   P RNV +WNAM++G L+ G   +A   F  MP R
Sbjct: 81  VSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFGEMPKR 140

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S + +V GL + GE+  A  V      R     +LV ++  +I GY + G   EA K
Sbjct: 141 NVVSYTTMVDGLARRGEVARAREVFDAMPDR-----NLV-SWAAMISGYVENGMFVEATK 194

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF+ +P            ++N+V+  +MI  Y K GDV SAR +F+ +  +D  SWNTMI
Sbjct: 195 LFEAMP------------EKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMI 242

Query: 241 SGYIHVLDMEEASNLFVKM----PHPDTLTW----------------------------- 267
           +GY+H    EEA  L   M      PD  T                              
Sbjct: 243 AGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLE 302

Query: 268 ------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
                 NA+++ Y++ GN+  +   F  +  K++VSWN++IA    +  Y+  I LF +M
Sbjct: 303 SGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEM 362

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGA 379
           ++ G  PD  TF S+LS    +  +   +++  +++    + P       ++ + +R G 
Sbjct: 363 EMTGLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQ 422

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           + +A    ++M L      W +++G C  HG
Sbjct: 423 LEKASSYIKDMPLEAEKNVWGSLLGACQMHG 453



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 184/373 (49%), Gaps = 35/373 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++G ++      A +LF EMP+R+VVS+  M+ G ++ RG   +  AR +FD MP+R+ 
Sbjct: 117 MLAGLLRLGRADDADRLFGEMPKRNVVSYTTMVDG-LARRGE--VARAREVFDAMPDRNL 173

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  +ISGY + G   EA +LF +MP +NVV+  AMI+ + + GDV +A   FD +  +
Sbjct: 174 VSWAAMISGYVENGMFVEATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAK 233

Query: 121 DSASLSALVSGLIQNGELDEAAR---VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           D  S + +++G + NG  +EA R   V+ + G + D    +        +   ++G+   
Sbjct: 234 DVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTH 293

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           A  +   +       E  + F       N+++  Y+K G+V  +  +F  +  +D  SWN
Sbjct: 294 AIAIKAML-------ESGISFS------NALMTMYSKCGNVGESELVFINLRTKDIVSWN 340

Query: 238 TMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           T+I+ Y      ++   LF +M      PD +T+ +++S    +G ++ +L  F  M  K
Sbjct: 341 TIIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSK 400

Query: 294 NLVSWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
             +S  +    C  +        E A      M +E EK   + + S+L    G   +H 
Sbjct: 401 YAISPRAEHYACIVDILSRAGQLEKASSYIKDMPLEAEK---NVWGSLL----GACQMHG 453

Query: 349 GMQIHQMVTKTVI 361
            +Q+ ++  K ++
Sbjct: 454 NVQLGELAAKMLV 466



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 175/352 (49%), Gaps = 48/352 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+ G  +R E+A+AR++FD MP R++VSW  MISGY+    +G   EA  LF+ MPE++ 
Sbjct: 148 MVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVE---NGMFVEATKLFEAMPEKNV 204

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEF----FDR 116
           V    +I+ Y K G++E A RLF+ + A++V+SWN MI+G++ NG    A+      F  
Sbjct: 205 VACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFRE 264

Query: 117 MPGRDSASLSALVS-----GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
               D A+L A+++      L++ G+   A  +           E  +   N L+  Y +
Sbjct: 265 GVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAML-------ESGISFSNALMTMYSK 317

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--- 228
            G V E+  +F            N+R K +IVSWN++I  YA+ G       +F +M   
Sbjct: 318 CGNVGESELVFI-----------NLRTK-DIVSWNTIIAAYAQHGKYQKVIALFHEMEMT 365

Query: 229 -LERDTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLEL 282
            L  D  ++ +++S   HV  ++ +  LF  M       P    +  +V   ++ G LE 
Sbjct: 366 GLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEK 425

Query: 283 ALDFFKRMP---QKNLVSWNSMIAGCETNKDY---EGAIKLFIQMQVEGEKP 328
           A  + K MP   +KN+  W S++  C+ + +    E A K+ +Q   E   P
Sbjct: 426 ASSYIKDMPLEAEKNV--WGSLLGACQMHGNVQLGELAAKMLVQSDSESSGP 475


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 230/662 (34%), Positives = 354/662 (53%), Gaps = 102/662 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY---------ISSRGS-GFLEEARY 50
           MISG+    +M +A KLF++MP+RD VSWN M+SGY         I + GS G+L+ A  
Sbjct: 76  MISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKLALQ 135

Query: 51  LFDIMPERD-----CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG 105
           L     + D     CV   +V+  Y K G M+ A ++F   P  ++  WN+MI G+ + G
Sbjct: 136 LHGFAEKFDFGIDTCVE-TSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYG 194

Query: 106 DVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA-------------------ARVLV 146
            V  A+E F +MP RD+ S + ++S L Q+G   E                    A VL 
Sbjct: 195 SVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLS 254

Query: 147 KCGSRCD--GGEDL------------VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
            C S  D   G  L            V A   LI  Y + GR+E AR++FD +       
Sbjct: 255 ACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLT------ 308

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSW------------ 236
                 + N VSW S+I   A+AG    A  +F QM E     D F+             
Sbjct: 309 ------EHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKD 362

Query: 237 -----------------------NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
                                  N +++ Y    D+ +A++ F  MP  D ++W AM++ 
Sbjct: 363 ISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITA 422

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           ++Q G++E A ++F +MP++N++SWNSM+A       +E  +K++IQM  EG K D  TF
Sbjct: 423 FSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITF 482

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
           S+ +S  + +  L LG QI     K     +V + N+++TMY+RCG I EA+ +F  + +
Sbjct: 483 STSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSI-V 541

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
           +KN+VSWNAM+ G A +G   + +E+F+ M +   +P  I+++SVLS C+H+G V EG+ 
Sbjct: 542 MKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQY 601

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           +F SM  ++GI P  EHF  +VD++GR G+LE A +LI  MPF+P+ A+WGALL ACR+H
Sbjct: 602 YFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIH 661

Query: 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
            N +LA++A + L++++ E    Y LL N+Y++ G+      VR LM+   ++K  G SW
Sbjct: 662 GNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSW 721

Query: 573 VD 574
           ++
Sbjct: 722 IE 723



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 139/524 (26%), Positives = 247/524 (47%), Gaps = 80/524 (15%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G + +A  +F  +   +  +WNT+ISG+A +G+M EA +LF  MP R+ VSWN+M+SG+ 
Sbjct: 53  GLISDAYRVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYF 112

Query: 103 QNGDVANAI-------------------EFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
            NG++   I                   E FD   G D+   ++++   I+ G +D A +
Sbjct: 113 HNGELEATIKASGSLGYLKLALQLHGFAEKFDF--GIDTCVETSVLDMYIKCGAMDFAQK 170

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
           V       C      +  +N++I GY + G V++A +LF K+P            +R+ V
Sbjct: 171 VF------CRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMP------------ERDTV 212

Query: 204 SWNSMIMCYAKAG----DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
           SWN+MI   ++ G     + +  E++ Q    ++ ++ +++S    + D+E  ++L  ++
Sbjct: 213 SWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARI 272

Query: 260 ----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
               P  D      ++  YA+ G LE A   F  + + N VSW S+I G       E A+
Sbjct: 273 VRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEAL 332

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMY 374
            LF QM+      D+ T +++L +     D+ +G Q+H   +T+ +   VP+ NAL+TMY
Sbjct: 333 VLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMY 392

Query: 375 ARCGAIVEARIIFEEMKLL------------------------------KNVVSWNAMIG 404
           A+CG + +A   FE M +                               +NV+SWN+M+ 
Sbjct: 393 AKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLA 452

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
                G+  E L+++  M    V   +ITF + +SACA   ++  G Q   +   + G  
Sbjct: 453 TYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQ-ILAQAEKLGFS 511

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
             +    S+V +  R G++E+A  +   +  + +   W A++  
Sbjct: 512 SNVSVANSVVTMYSRCGQIEEAQKMFSSIVMK-NLVSWNAMMAG 554



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 124/459 (27%), Positives = 188/459 (40%), Gaps = 90/459 (19%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
            K +I   N ++  Y+  G +  A  +F  ++  + +SWNTMISG+     M EA  LF 
Sbjct: 35  LKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFE 94

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLEL----------------------------------- 282
           KMP  D+++WN+M+SGY   G LE                                    
Sbjct: 95  KMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETS 154

Query: 283 ---------ALDF----FKRMPQKNLVSWNSMIAGCETNKDYEGAIKL------------ 317
                    A+DF    F R P  +L  WNSMI G       + A++L            
Sbjct: 155 VLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSW 214

Query: 318 -------------------FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVT 357
                              F++M  +G +P+  T++S+LS  + I DL  G  +H ++V 
Sbjct: 215 NTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVR 274

Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
                DV     LI MYA+CG +  AR +F+ +    N VSW ++IGG A  GF  EAL 
Sbjct: 275 MEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLT-EHNAVSWTSLIGGVAQAGFQEEALV 333

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           LF  MR   V     T  +VL  C     +  G Q     +   G++  +    +LV + 
Sbjct: 334 LFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITR-GLDSSVPVANALVTMY 392

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
            + G +  A    + MP   D   W A++ A     +VE A+   E   K+   N   + 
Sbjct: 393 AKCGDVWKANHAFELMPIR-DIISWTAMITAFSQAGDVEKAR---EYFDKMPERNVISWN 448

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
            +   Y   G W++  +V + M    +K      W+ FS
Sbjct: 449 SMLATYMQRGYWEEGLKVYIQMLREGVKT----DWITFS 483



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 162/323 (50%), Gaps = 28/323 (8%)

Query: 205 WNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           + SM  C A    +  AR++  Q+    L+   F  N +++ Y +   + +A  +F  + 
Sbjct: 8   YESMKEC-ASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIM 66

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE-------- 312
            P+  +WN M+SG+A  G +  A   F++MP+++ VSWNSM++G   N + E        
Sbjct: 67  FPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGS 126

Query: 313 -GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL---GMQIHQMV-TKTVIPDVPIN 367
            G +KL +Q+    EK D   F     + + ++D+++    M   Q V  +T  P +   
Sbjct: 127 LGYLKLALQLHGFAEKFD---FGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCW 183

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           N++I  Y++ G++ +A  +F +M   ++ VSWN MI   + HGF  E L  F  M +   
Sbjct: 184 NSMIYGYSKYGSVKKALELFAKMP-ERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGF 242

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA--SLVDIVGRHGRLED 485
            P  +T+ SVLSAC     +E G      +V    +EP ++ +A   L+D+  + GRLE 
Sbjct: 243 RPNSMTYASVLSACTSIYDLEWGAHLHARIVR---MEPCLDVYAGCGLIDMYAKCGRLES 299

Query: 486 AMDLIKGMPFEPDKAVWGALLGA 508
           A  +  G+  E +   W +L+G 
Sbjct: 300 ARQVFDGLT-EHNAVSWTSLIGG 321


>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
           mitochondrial-like [Vitis vinifera]
          Length = 743

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/581 (35%), Positives = 343/581 (59%), Gaps = 23/581 (3%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++ G      + +AR+LF+ MP+R+VVSWN M+ G I S   G LEEAR +F+ MP +  
Sbjct: 144 LLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLIRS---GQLEEARRVFNEMPVKSQ 200

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN +I+GYA+   MEEA  LF+ M  RNVV+W +MISG+ + G+V      F +MP R
Sbjct: 201 VSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPER 260

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCD---GGEDLVR-AYNTLIVGYGQRGRVE 176
           +  S +A++ G   NG   EA  + ++     D     E  +  AY    +G+   G   
Sbjct: 261 NVVSWTAMIGGFAWNGFYKEALLLFLEMKGNYDMKPNDETFISLAYACAGIGFPHLGMQF 320

Query: 177 EARKLFDKIPVNC-DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF-EQMLERDTF 234
            A  +     +NC D  + + R       + S+I  Y+  G +  A  IF    +  +T 
Sbjct: 321 HAHLI-----INCWDYDDYDGRL------FKSLIHMYSMFGFMDFAWYIFFRNSMSYNTQ 369

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
           S N+MI+GYI +  +E+A +LF  +P  D ++W +M++GY  +G +  A   F  MP ++
Sbjct: 370 SCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRD 429

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
            V+W  M++G   N+ +  A  LF +M+V+G  P   TFS +L  +  +  L  G Q H 
Sbjct: 430 AVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHC 489

Query: 355 MVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
           ++ KT    D+ + N+LI+MYA+CG I +A  IF +M + ++++SWN+MI G + HG  +
Sbjct: 490 LLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKM-ISRDLISWNSMIMGFSHHGLTS 548

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           EAL++F++M +    P  +TF+ +LSAC+HAGL+ +G + F +M + + I+P++EH+  +
Sbjct: 549 EALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDAMSDVFAIQPQLEHYVCM 608

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN-NVELAQVAAEALMKVEPEN 532
           V+++GR G++E+A + I  +PFEPD  +WGALLG C     N  +A+ AA+ L++++P N
Sbjct: 609 VNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLGVCGFGMINTGVARRAAKRLLELDPLN 668

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +  +V+L N++A +G+  +  ++R  M    ++K  G SW+
Sbjct: 669 APAHVVLCNIHASIGQRAEEGQLRKEMGLKGVRKVPGCSWI 709



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 161/543 (29%), Positives = 260/543 (47%), Gaps = 58/543 (10%)

Query: 6   VKRREMAKARKLFDEMPQRDV----VSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           + ++ + +AR + DEMP R V    V W  ++S +     +GF++EAR LF+IMPER+ V
Sbjct: 52  LSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKF---SKNGFIDEARALFEIMPERNVV 108

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           T+N ++SGY + G + +A R F  MP RNVVSW +++ G    G +  A E F+ MP R+
Sbjct: 109 TYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERN 168

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S ++++ GLI++G+L+EA RV  +   +         ++N +I GY +  R+EEAR L
Sbjct: 169 VVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQ------VSWNVMIAGYAEHSRMEEARVL 222

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           FD        G G+    RN+V+W SMI  Y +AG+V     +F++M ER+  SW  MI 
Sbjct: 223 FD--------GMGD----RNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIG 270

Query: 242 GYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           G+      +EA  LF++M       P+  T+ ++    A IG   L + F          
Sbjct: 271 GFAWNGFYKEALLLFLEMKGNYDMKPNDETFISLAYACAGIGFPHLGMQFHAH------- 323

Query: 297 SWNSMIAGCETNKDYEGAI-KLFIQMQVEGEKPD-------RHTFS----SILSMSSGIV 344
               +I  C    DY+G + K  I M       D       R++ S    S  SM +G +
Sbjct: 324 ----LIINCWDYDDYDGRLFKSLIHMYSMFGFMDFAWYIFFRNSMSYNTQSCNSMINGYI 379

Query: 345 DLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
            +    +   +     + D     ++I  Y   G I +A  +F  M   ++ V+W  M+ 
Sbjct: 380 RIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMP-DRDAVAWTVMVS 438

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGI 463
           G   +    EA  LF  MR   V P   TF  +L A      +++GRQ H   M  ++  
Sbjct: 439 GHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEF 498

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE 523
           +  +++  SL+ +  + G + DA  +   M    D   W +++     H     A    E
Sbjct: 499 DLILQN--SLISMYAKCGEIGDAYSIFSKM-ISRDLISWNSMIMGFSHHGLTSEALKVFE 555

Query: 524 ALM 526
           A++
Sbjct: 556 AML 558


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/586 (36%), Positives = 317/586 (54%), Gaps = 74/586 (12%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           GFLE+AR +FD M +R+  +WN V+    K G ++EAL LF  MP R+  SWNAM+SGF 
Sbjct: 68  GFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFA 127

Query: 103 QNGDVANAIEFFDRMPGRD--------SASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
           Q      A+ F   M   D         ++LSA  +GL+      +   ++ K     D 
Sbjct: 128 QRDRFEEALRFVVDMHSEDFVLNEYSFGSALSA-CAGLMDLSIGVQIHGLIAKSRYSLD- 185

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
               V   + L+  Y +   V  A++ FD + V            RNIVSWNS+I CY +
Sbjct: 186 ----VYMGSALVDMYSKCRVVASAQRAFDDMDV------------RNIVSWNSLITCYEQ 229

Query: 215 AGDVVSAREIFEQML----------------------------------------ERDTF 234
            G    A E+F +M+                                          D  
Sbjct: 230 NGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLV 289

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
             N ++  Y     + EA  +F +MP  D ++  +MVSGYA+  +++ A   F  M ++N
Sbjct: 290 LGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERN 349

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           +VSWN++IAG   N + E A++LF+ ++ E   P  +TF ++L+  + + DL LG Q H 
Sbjct: 350 VVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHT 409

Query: 355 MVTKTVI-------PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
            + K           D+ + N+LI MY +CG + + R++FE M L ++ VSWNAMI G A
Sbjct: 410 HILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERM-LERDNVSWNAMIVGYA 468

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
            +G+ TEALE+F+ M      P ++T I VLSAC+HAGLVEEGR +F+SM  E+G+ P  
Sbjct: 469 QNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVK 528

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
           +H+  +VD++GR G L++A +LI+ MP EPD  VWG+LL AC+VH N+ L +  AE L++
Sbjct: 529 DHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLE 588

Query: 528 VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           ++P NS PYVLL NMYA++GRW D   VR  M+   + K  G SW+
Sbjct: 589 IDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWI 634



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 207/492 (42%), Gaps = 104/492 (21%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER------------ 58
           + +A  LF  MP+RD  SWN M+SG+  ++   F E  R++ D+  E             
Sbjct: 101 LDEALNLFKCMPERDQCSWNAMVSGF--AQRDRFEEALRFVVDMHSEDFVLNEYSFGSAL 158

Query: 59  --------------------------DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV 92
                                     D    + ++  Y+K   +  A R F+ M  RN+V
Sbjct: 159 SACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIV 218

Query: 93  SWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDEAARVLVKC 148
           SWN++I+ + QNG    A+E F RM       D  +L+++ S       + E  ++  + 
Sbjct: 219 SWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARV 278

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
                   DLV   N L+  Y +  RV EAR +FD++P+            R++VS  SM
Sbjct: 279 MKHDKYRNDLVLG-NALVDMYAKCRRVNEARLVFDRMPL------------RDVVSETSM 325

Query: 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH------- 261
           +  YAKA  V +AR +F  M+ER+  SWN +I+GY    + EEA  LF+ +         
Sbjct: 326 VSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTH 385

Query: 262 --------------------------------------PDTLTWNAMVSGYAQIGNLELA 283
                                                  D    N+++  Y + G +E  
Sbjct: 386 YTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDG 445

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F+RM +++ VSWN+MI G   N     A+++F +M V GE+PD  T   +LS  S  
Sbjct: 446 RLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHA 505

Query: 344 VDLHLGMQIHQMVT--KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
             +  G    Q +T    ++P       ++ +  R G + EA  + + M +  + V W +
Sbjct: 506 GLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGS 565

Query: 402 MIGGCASHGFAT 413
           ++  C  HG  T
Sbjct: 566 LLAACKVHGNIT 577



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 185/356 (51%), Gaps = 8/356 (2%)

Query: 218 VVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQI 277
           +V AR I +     + F  N ++  Y     +E+A  +F  M   +T +WNA++    + 
Sbjct: 40  LVHAR-IIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKF 98

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
           G L+ AL+ FK MP+++  SWN+M++G      +E A++  + M  E    + ++F S L
Sbjct: 99  GALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSAL 158

Query: 338 SMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
           S  +G++DL +G+QIH ++ K+    DV + +AL+ MY++C  +  A+  F++M  ++N+
Sbjct: 159 SACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMD-VRNI 217

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
           VSWN++I     +G A +ALE+F  M +  + P  IT  SV SACA    + EG Q    
Sbjct: 218 VSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHAR 277

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE 516
           ++        +    +LVD+  +  R+ +A  +   MP   D     +++      ++V+
Sbjct: 278 VMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR-DVVSETSMVSGYAKASSVK 336

Query: 517 LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
            A++    +M+    N   +  L   Y   G  ++A  + LL+K  +I  PT Y++
Sbjct: 337 AARLMFSNMME---RNVVSWNALIAGYTQNGENEEAVRLFLLLKRESI-WPTHYTF 388



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 192/459 (41%), Gaps = 86/459 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           ++  Y K R +A A++ FD+M  R++VSWN +I+ Y                        
Sbjct: 192 LVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPD 251

Query: 37  -------------ISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
                        +S+   G    AR +       D V  N ++  YAK   + EA  +F
Sbjct: 252 EITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVF 311

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
           + MP R+VVS  +M+SG+ +   V  A   F  M  R+  S +AL++G  QNGE +EA R
Sbjct: 312 DRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVR 371

Query: 144 VLVKCG------SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           + +         +    G  L    N   +  G++      +  F         GE +  
Sbjct: 372 LFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGF-----WFKSGEDS-- 424

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
              +I   NS+I  Y K G V   R +FE+MLERD  SWN MI GY       EA  +F 
Sbjct: 425 ---DIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFR 481

Query: 258 KM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLV----SWNSMI-----A 303
           +M      PD +T   ++S  +  G +E    +F+ M  +  LV     +  M+     A
Sbjct: 482 EMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRA 541

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363
           GC      + A  L   M +E   PD   + S+L+       +H  + + + V + ++  
Sbjct: 542 GC-----LDEANNLIQTMPME---PDAVVWGSLLAACK----VHGNITLGKYVAERLLEI 589

Query: 364 VPINNA----LITMYARCGA---IVEARIIFEEMKLLKN 395
            P+N+     L  MYA  G    +V  R    +M ++K 
Sbjct: 590 DPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQ 628


>gi|297846216|ref|XP_002890989.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336831|gb|EFH67248.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 792

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 217/615 (35%), Positives = 348/615 (56%), Gaps = 55/615 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GYVK R + +A  LF EMP ++VVSW VM++        G  ++A  LFD MPER+ 
Sbjct: 144 MLTGYVKCRRLNEAWTLFREMP-KNVVSWTVMLTALCDD---GRSDDAVELFDEMPERNV 199

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT+++G  + GE E+A ++F++MP+R+ VSWNAMI G+++NG +  A   F+ M  +
Sbjct: 200 VSWNTLVTGLIRNGETEKAKQVFDAMPSRDAVSWNAMIKGYIENGGMEEAKLLFENMSEK 259

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  + +++V G  + G++ EA R+       C+  E  V ++  +I G+       EA  
Sbjct: 260 NVVTWTSMVYGYCRYGDVHEAYRLF------CEMPERNVVSWTAMISGFAWNEFYREALM 313

Query: 181 LFDKIPVNCDR---------------GEGNVRFKR-------NIVS--W----------N 206
           LF ++  + D                G   V F+R        ++S  W           
Sbjct: 314 LFLEMKKDVDAISPNGETLISLAYACGGLGVGFRRLGEQLHAQVISNGWESVDHDGRLAK 373

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-PDTL 265
           S++  YA  G + SA+ +  +    D  S N +IS Y+   D E A  LF ++    D +
Sbjct: 374 SLVHMYASFGLIASAQSLLNESF--DLQSCNIIISAYLKNGDFERAETLFRRVESLHDKV 431

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           +W +M+ GY   G++  A D F+++  K+ V+W  MI+G   N+ +  A  L   M   G
Sbjct: 432 SWTSMIDGYLDAGDVSRAFDLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCG 491

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI---PDVPINNALITMYARCGAIVE 382
            KP   T+S +LS +    +L  G  +H ++ KT     PD+ + N+L++MYA+CGAI +
Sbjct: 492 LKPLNSTYSVLLSSAGATSNLDQGKHLHCVIAKTTACYDPDLILQNSLVSMYAKCGAIDD 551

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           A  IF +M + K++VSWN++I G + HG A +AL+LFK M    + P  +TF+ VLSAC+
Sbjct: 552 AYEIFSKM-VRKDIVSWNSVIIGLSHHGLADKALKLFKEMLDSGMKPNSVTFLGVLSACS 610

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
           H+GL+ +G + FK+M   Y I+P +EH+ S++D++GR G+L++A + I  +PF PD  V+
Sbjct: 611 HSGLITKGLELFKAMKETYSIQPGVEHYISMIDLLGRAGKLKEAEEFISALPFTPDHTVY 670

Query: 503 GALLGAC----RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558
           GALLG C    R  +   +A+ AA  L++++P N+  +V L NMYA +GR +   E+R  
Sbjct: 671 GALLGLCGLNWRDRDAAGIAERAAMRLLELDPVNAPGHVALCNMYAGLGRHEMEKEMRKE 730

Query: 559 MKSNNIKKPTGYSWV 573
           M    +KK  G SWV
Sbjct: 731 MGIKGVKKTPGCSWV 745



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 142/493 (28%), Positives = 237/493 (48%), Gaps = 76/493 (15%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRG-SGFLEEARYLFDIMPERDCVTWNTVISG 69
           +  AR L D++PQR  +S  +  +  ++    +G+L+EAR LF++MPER+ VT N +++G
Sbjct: 88  LVHARHLLDKIPQRGSISRVIYCTSLLTKYAKAGYLDEARVLFEVMPERNIVTCNAMLTG 147

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           Y K   + EA  LF  MP +NVVSW  M++    +G   +A+E FD MP R+  S + LV
Sbjct: 148 YVKCRRLNEAWTLFREMP-KNVVSWTVMLTALCDDGRSDDAVELFDEMPERNVVSWNTLV 206

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           +GLI+NGE ++A +V     SR     D V ++N +I GY + G +EEA+ LF+ +    
Sbjct: 207 TGLIRNGETEKAKQVFDAMPSR-----DAV-SWNAMIKGYIENGGMEEAKLLFENMS--- 257

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
                    ++N+V+W SM+  Y + GDV  A  +F +M ER+  SW  MISG+      
Sbjct: 258 ---------EKNVVTWTSMVYGYCRYGDVHEAYRLFCEMPERNVVSWTAMISGFAWNEFY 308

Query: 250 EEASNLFVKM--------PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK---NLVS- 297
            EA  LF++M        P+ +TL   A   G   +G        F+R+ ++    ++S 
Sbjct: 309 REALMLFLEMKKDVDAISPNGETLISLAYACGGLGVG--------FRRLGEQLHAQVISN 360

Query: 298 -WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
            W S+        D++G +           K   H ++S   ++S             ++
Sbjct: 361 GWESV--------DHDGRLA----------KSLVHMYASFGLIASA----------QSLL 392

Query: 357 TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
            ++   D+   N +I+ Y + G    A  +F  ++ L + VSW +MI G    G  + A 
Sbjct: 393 NESF--DLQSCNIIISAYLKNGDFERAETLFRRVESLHDKVSWTSMIDGYLDAGDVSRAF 450

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
           +LF+ +         +T+  ++S      L  E       MV   G++P    ++ L+  
Sbjct: 451 DLFQKLHD----KDGVTWTVMISGLVQNELFAEAASLLSDMV-RCGLKPLNSTYSVLLSS 505

Query: 477 VGRHGRLEDAMDL 489
            G    L+    L
Sbjct: 506 AGATSNLDQGKHL 518



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 133/509 (26%), Positives = 226/509 (44%), Gaps = 79/509 (15%)

Query: 96  AMISGFLQNGDVANAIEFFDRMPGRDSAS----LSALVSGLIQNGELDEAARVLVKCGSR 151
           A+I   L  G + +A    D++P R S S     ++L++   + G LDEA RVL +    
Sbjct: 77  ALILRRLSEGGLVHARHLLDKIPQRGSISRVIYCTSLLTKYAKAGYLDEA-RVLFEVMP- 134

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
               E  +   N ++ GY +  R+ EA  LF ++P             +N+VSW  M+  
Sbjct: 135 ----ERNIVTCNAMLTGYVKCRRLNEAWTLFREMP-------------KNVVSWTVMLTA 177

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMV 271
               G    A E+F++M ER+  SWNT+++G I   + E+A  +F  MP  D ++WNAM+
Sbjct: 178 LCDDGRSDDAVELFDEMPERNVVSWNTLVTGLIRNGETEKAKQVFDAMPSRDAVSWNAMI 237

Query: 272 SGYAQIGNLE-------------------------------LALDFFKRMPQKNLVSWNS 300
            GY + G +E                                A   F  MP++N+VSW +
Sbjct: 238 KGYIENGGMEEAKLLFENMSEKNVVTWTSMVYGYCRYGDVHEAYRLFCEMPERNVVSWTA 297

Query: 301 MIAGCETNKDYEGAIKLFIQMQ--VEGEKPDRHTFSSILSMSSGI-VDL-HLGMQIHQMV 356
           MI+G   N+ Y  A+ LF++M+  V+   P+  T  S+     G+ V    LG Q+H  V
Sbjct: 298 MISGFAWNEFYREALMLFLEMKKDVDAISPNGETLISLAYACGGLGVGFRRLGEQLHAQV 357

Query: 357 T----KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
                ++V  D  +  +L+ MYA  G I  A+ +  E   L+   S N +I     +G  
Sbjct: 358 ISNGWESVDHDGRLAKSLVHMYASFGLIASAQSLLNESFDLQ---SCNIIISAYLKNGDF 414

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
             A  LF+ + S   L   +++ S++     AG V      F+ + ++ G+      +  
Sbjct: 415 ERAETLFRRVES---LHDKVSWTSMIDGYLDAGDVSRAFDLFQKLHDKDGVT-----WTV 466

Query: 473 LVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           ++  + ++    +A  L+  M     +P  + +  LL +    +N++  +     + K  
Sbjct: 467 MISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHLHCVIAKTT 526

Query: 530 PENSTPYVL---LYNMYADVGRWDDANEV 555
                  +L   L +MYA  G  DDA E+
Sbjct: 527 ACYDPDLILQNSLVSMYAKCGAIDDAYEI 555


>gi|357521583|ref|XP_003631080.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525102|gb|AET05556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 220/645 (34%), Positives = 335/645 (51%), Gaps = 108/645 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GYVK R +  AR LFD MPQ+D VSWNVM+SGY+    SG ++EA+ +FD MP +D 
Sbjct: 85  MLTGYVKNRRLVDARNLFDLMPQKDAVSWNVMLSGYVR---SGCVDEAKLVFDNMPYKDS 141

Query: 61  VTWNTVISGYAKTGEMEEALRLFNS-------------------------------MPAR 89
           ++WN +++ Y + G +EEA RLF S                               MP R
Sbjct: 142 ISWNGLLAVYVQNGRLEEARRLFESKVDWELISWNCLMGGYVKRKMLGDARRLFDHMPVR 201

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
           N +SWN MISG+ ++GD+  A   F+  P RD  + +A+V   +Q+G LDEA RV     
Sbjct: 202 NAISWNTMISGYARDGDLLQARRLFEESPVRDVFTWTAMVFAYVQSGMLDEARRVF---- 257

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
               G  ++  AYN +I GY Q  +++ AR+LF+ +P             RN+ SWN++I
Sbjct: 258 DEMPGKREM--AYNVMIAGYVQYKKMDMARELFEAMPC------------RNVGSWNTII 303

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP------- 262
             Y + GD+  ARE+F+ M +RD  SW  +I+GY      E+  ++ VKM          
Sbjct: 304 SGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHYEKVMHMLVKMKRDGKSLNRS 363

Query: 263 --------------------------------DTLTWNAMVSGYAQIGNLELALDFFKRM 290
                                             L  NA++  Y + G++  A D F+RM
Sbjct: 364 TFCCALSTCAGMAALVLGKQVHGQAVKTGYDNGCLVGNALLEMYCKCGSIGEAYDVFERM 423

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
             K+++SWN+M+AG   +     A+ +F  M+  G KPD  T   +L  S+  +      
Sbjct: 424 QLKDIISWNTMLAGYARHGFGRQALLVFDSMKTAGFKPDEIT---MLIWSNNRL------ 474

Query: 351 QIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK-NVVSWNAMIGGCASH 409
              + V  T +P   + N L   +    ++ E +   EE ++ +   V    ++   +++
Sbjct: 475 ---RKVGNTWVP-TSLMNPLGNTWVTSTSVTEKQ---EERRVNRIGSVCITFLLVIISAY 527

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
            +   A  LF       +  T I  + VL AC+H GL + G ++F SM  +YGI P  +H
Sbjct: 528 KYRLHACHLFPCNWLLSLYLTCIHNVGVLLACSHTGLTDRGTEYFYSMSKDYGITPNSKH 587

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           +  ++D++GR G LE+A +L++ MPFEPD A WGALLGA R+H N EL + AAE +  +E
Sbjct: 588 YNCMIDLLGRAGLLEEAHNLMRNMPFEPDAATWGALLGASRIHGNAELGEKAAEMVFNME 647

Query: 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           P N+  YVLL N+YA +G+W D  ++RL M+   I+K  GYSWV+
Sbjct: 648 PNNAGMYVLLSNLYATLGKWVDVGKLRLKMRQLGIQKIPGYSWVE 692



 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 152/426 (35%), Positives = 237/426 (55%), Gaps = 51/426 (11%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G    A  +FD MP ++  +WN +++GY K   + +A  LF+ MP ++ VSWN M+SG+
Sbjct: 61  NGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLMPQKDAVSWNVMLSGY 120

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
           +++G V  A   FD MP +DS S + L++  +QNG L+EA R+     S+ D   +L+ +
Sbjct: 121 VRSGCVDEAKLVFDNMPYKDSISWNGLLAVYVQNGRLEEARRLF---ESKVDW--ELI-S 174

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +N L+ GY +R  + +AR+LFD +PV            RN +SWN+MI  YA+ GD++ A
Sbjct: 175 WNCLMGGYVKRKMLGDARRLFDHMPV------------RNAISWNTMISGYARDGDLLQA 222

Query: 222 REIFEQMLERDTFSW-------------------------------NTMISGYIHVLDME 250
           R +FE+   RD F+W                               N MI+GY+    M+
Sbjct: 223 RRLFEESPVRDVFTWTAMVFAYVQSGMLDEARRVFDEMPGKREMAYNVMIAGYVQYKKMD 282

Query: 251 EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
            A  LF  MP  +  +WN ++SGY Q G++  A + F  M Q++ VSW ++IAG      
Sbjct: 283 MARELFEAMPCRNVGSWNTIISGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGH 342

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNA 369
           YE  + + ++M+ +G+  +R TF   LS  +G+  L LG Q+H    KT   +   + NA
Sbjct: 343 YEKVMHMLVKMKRDGKSLNRSTFCCALSTCAGMAALVLGKQVHGQAVKTGYDNGCLVGNA 402

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           L+ MY +CG+I EA  +FE M+ LK+++SWN M+ G A HGF  +AL +F SM++    P
Sbjct: 403 LLEMYCKCGSIGEAYDVFERMQ-LKDIISWNTMLAGYARHGFGRQALLVFDSMKTAGFKP 461

Query: 430 TYITFI 435
             IT +
Sbjct: 462 DEITML 467



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 145/307 (47%), Gaps = 18/307 (5%)

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           IV   + I  + + G    A  +F+ M  ++ FSWN M++GY+    + +A NLF  MP 
Sbjct: 48  IVKCTNSISTHMRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLMPQ 107

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            D ++WN M+SGY + G ++ A   F  MP K+ +SWN ++A    N   E A +LF + 
Sbjct: 108 KDAVSWNVMLSGYVRSGCVDEAKLVFDNMPYKDSISWNGLLAVYVQNGRLEEARRLF-ES 166

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIV 381
           +V+ E        S   +  G V   +     ++     + +    N +I+ YAR G ++
Sbjct: 167 KVDWE------LISWNCLMGGYVKRKMLGDARRLFDHMPVRNAISWNTMISGYARDGDLL 220

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
           +AR +FEE   +++V +W AM+      G   EA  +F  M   + +   +    +++  
Sbjct: 221 QARRLFEESP-VRDVFTWTAMVFAYVQSGMLDEARRVFDEMPGKREMAYNV----MIAGY 275

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
                ++  R+ F++M         +  + +++   G++G +  A +L   M  + D   
Sbjct: 276 VQYKKMDMARELFEAMPCR-----NVGSWNTIISGYGQNGDIAQARELFDMMT-QRDCVS 329

Query: 502 WGALLGA 508
           W A++  
Sbjct: 330 WAAIIAG 336


>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 828

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 204/583 (34%), Positives = 343/583 (58%), Gaps = 29/583 (4%)

Query: 1   MISGYVKRR-EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE-- 57
           MI+  +K + ++ KA +LF ++P+++ VS+  MI+G++ +   G  +EA  L+   P   
Sbjct: 118 MITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRA---GRFDEAECLYAETPVKF 174

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           RD V  N ++SGY + G+  EA+R+F  M  + VVS+++M+ G+ + G + +A   FDRM
Sbjct: 175 RDPVASNVLLSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMGRILDARSLFDRM 234

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV------GYGQ 171
           P R+  + +A++ G  + G  ++   + ++   R +G  D+    NTL V       + +
Sbjct: 235 PERNVITWTAMIDGYFKAGFFEDGFGLFLRM--RQEG--DVRVNSNTLAVMFRACRDFFR 290

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
                +   L  ++P+  D   GN           S+I  Y+K G +  A+ +F  M  +
Sbjct: 291 YREGSQIHGLLSRMPLEFDLFLGN-----------SLISMYSKLGYMGEAKAVFGVMKYK 339

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           D+ SWN++I+G +    + EA  LF KMP  D ++W  M+ G++  G +   ++ F  MP
Sbjct: 340 DSVSWNSLITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMP 399

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           +K+ ++W +MI+   +N  YE A+  F +M  +   P+ +TFSS+LS ++ + DL  G+Q
Sbjct: 400 EKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLIEGLQ 459

Query: 352 IHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           IH  V K  +  D+ + N+L++MY +CG   +A  IF  +    N+VS+N MI G + +G
Sbjct: 460 IHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKIFSCISE-PNIVSYNTMISGFSYNG 518

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
           F  EA++LF  + S    P  +TF+++LSAC H G V+ G ++FKSM   YGIEP  +H+
Sbjct: 519 FGKEAVKLFSMLESTGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKFSYGIEPGPDHY 578

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
           A +VD+ GR G L++A +LI  MP EP   VWG+LL A + H  V+LA++AA+ L+++EP
Sbjct: 579 ACMVDLFGRSGLLDEAYNLISTMPCEPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEP 638

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +++TPYV+L  +Y+ VG+  D + +  + KS  IKK  G SW+
Sbjct: 639 DSATPYVVLSQLYSMVGKNSDCDRIMNIKKSKRIKKDPGSSWI 681



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 145/309 (46%), Gaps = 14/309 (4%)

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           I   NS I   A+ G++  A  IF QM  R   SWN MIS Y     M +A  +F +MP 
Sbjct: 50  IFQCNSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPV 109

Query: 262 PDTLTWNAMVSGYAQIGN---LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
             T ++NAM++  A I N   L  A + F  +P+KN VS+ +MI G      ++ A  L+
Sbjct: 110 RATTSYNAMIT--AMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAECLY 167

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCG 378
            +  V+   P     S++L   SG + +    +  ++     + +V   ++++  Y + G
Sbjct: 168 AETPVKFRDP---VASNVL--LSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMG 222

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS-FKVLPTYITFISV 437
            I++AR +F+ M   +NV++W AMI G    GF  +   LF  MR    V     T   +
Sbjct: 223 RILDARSLFDRMP-ERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVM 281

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
             AC       EG Q    +++   +E  +    SL+ +  + G + +A  +   M ++ 
Sbjct: 282 FRACRDFFRYREGSQ-IHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYK- 339

Query: 498 DKAVWGALL 506
           D   W +L+
Sbjct: 340 DSVSWNSLI 348


>gi|18398422|ref|NP_564401.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806407|sp|P0C7R0.1|PPR69_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g32415, mitochondrial; Flags: Precursor
 gi|332193363|gb|AEE31484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 221/616 (35%), Positives = 347/616 (56%), Gaps = 57/616 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GYVK R M +A  LF EMP ++VVSW VM++        G  E+A  LFD MPER+ 
Sbjct: 114 MLTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTALCDD---GRSEDAVELFDEMPERNV 169

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT+++G  + G+ME+A ++F++MP+R+VVSWNAMI G+++N  +  A   F  M  +
Sbjct: 170 VSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEK 229

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  + +++V G  + G++ EA R+       C+  E  + ++  +I G+       EA  
Sbjct: 230 NVVTWTSMVYGYCRYGDVREAYRLF------CEMPERNIVSWTAMISGFAWNELYREALM 283

Query: 181 LFDKIPVNCDRGEGN---------------VRFKR-------NIVS--W----------N 206
           LF ++  + D    N               V F+R        ++S  W           
Sbjct: 284 LFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVISNGWETVDHDGRLAK 343

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF--VKMPHPDT 264
           S++  YA +G + SA+ +  +    D  S N +I+ Y+   D+E A  LF  VK  H D 
Sbjct: 344 SLVHMYASSGLIASAQSLLNESF--DLQSCNIIINRYLKNGDLERAETLFERVKSLH-DK 400

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
           ++W +M+ GY + G++  A   F+++  K+ V+W  MI+G   N+ +  A  L   M   
Sbjct: 401 VSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRC 460

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI---PDVPINNALITMYARCGAIV 381
           G KP   T+S +LS +    +L  G  IH ++ KT     PD+ + N+L++MYA+CGAI 
Sbjct: 461 GLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIE 520

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
           +A  IF +M + K+ VSWN+MI G + HG A +AL LFK M      P  +TF+ VLSAC
Sbjct: 521 DAYEIFAKM-VQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSAC 579

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
           +H+GL+  G + FK+M   Y I+P I+H+ S++D++GR G+L++A + I  +PF PD  V
Sbjct: 580 SHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISALPFTPDHTV 639

Query: 502 WGALLGAC----RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
           +GALLG C    R  +   +A+ AA  L++++P N+  +V L N+YA +GR D   E+R 
Sbjct: 640 YGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNAPGHVALCNVYAGLGRHDMEKEMRK 699

Query: 558 LMKSNNIKKPTGYSWV 573
            M    +KK  G SWV
Sbjct: 700 EMGIKGVKKTPGCSWV 715



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 146/481 (30%), Positives = 238/481 (49%), Gaps = 62/481 (12%)

Query: 11  MAKARKLFDEMPQRD----VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTV 66
           +  AR L D++PQR     VV W  ++S Y  +   G+L+EAR LF++MPER+ VT N +
Sbjct: 58  LVHARHLLDKIPQRGSINRVVYWTSLLSKYAKT---GYLDEARVLFEVMPERNIVTCNAM 114

Query: 67  ISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS 126
           ++GY K   M EA  LF  MP +NVVSW  M++    +G   +A+E FD MP R+  S +
Sbjct: 115 LTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWN 173

Query: 127 ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
            LV+GLI+NG++++A +V     SR     D+V ++N +I GY +   +EEA+ LF  + 
Sbjct: 174 TLVTGLIRNGDMEKAKQVFDAMPSR-----DVV-SWNAMIKGYIENDGMEEAKLLFGDMS 227

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246
                       ++N+V+W SM+  Y + GDV  A  +F +M ER+  SW  MISG+   
Sbjct: 228 ------------EKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWN 275

Query: 247 LDMEEASNLFVKMPHP-DTLTWNA--MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
               EA  LF++M    D ++ N   ++S     G L +    F+R+ ++  +    +  
Sbjct: 276 ELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVE---FRRLGEQ--LHAQVISN 330

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363
           G ET  D++G +           K   H ++     SSG++          ++ ++   D
Sbjct: 331 GWET-VDHDGRLA----------KSLVHMYA-----SSGLI-----ASAQSLLNESF--D 367

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           +   N +I  Y + G +  A  +FE +K L + VSW +MI G    G  + A  LF+ + 
Sbjct: 368 LQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLH 427

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
                   +T+  ++S      L  E       MV   G++P    ++ L+   G    L
Sbjct: 428 D----KDGVTWTVMISGLVQNELFAEAASLLSDMV-RCGLKPLNSTYSVLLSSAGATSNL 482

Query: 484 E 484
           +
Sbjct: 483 D 483


>gi|8920616|gb|AAF81338.1|AC007767_18 Contains similarity to a hypothetical protein F19I3.26 gi|7485810
           from Arabidopsis thaliana BAC F19I3 gb|AC004238. It
           contains a PPR repeat domain PF|01535. ESTs gb|AV539170,
           gb|AV551571, gb|AA597781, gb|AV544524, gb|AV531577 and
           gb|AV533492 come from this gene [Arabidopsis thaliana]
          Length = 864

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 221/616 (35%), Positives = 347/616 (56%), Gaps = 57/616 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GYVK R M +A  LF EMP ++VVSW VM++        G  E+A  LFD MPER+ 
Sbjct: 217 MLTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTALCDD---GRSEDAVELFDEMPERNV 272

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT+++G  + G+ME+A ++F++MP+R+VVSWNAMI G+++N  +  A   F  M  +
Sbjct: 273 VSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEK 332

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  + +++V G  + G++ EA R+       C+  E  + ++  +I G+       EA  
Sbjct: 333 NVVTWTSMVYGYCRYGDVREAYRLF------CEMPERNIVSWTAMISGFAWNELYREALM 386

Query: 181 LFDKIPVNCDRGEGN---------------VRFKR-------NIVS--W----------N 206
           LF ++  + D    N               V F+R        ++S  W           
Sbjct: 387 LFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVISNGWETVDHDGRLAK 446

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF--VKMPHPDT 264
           S++  YA +G + SA+ +  +    D  S N +I+ Y+   D+E A  LF  VK  H D 
Sbjct: 447 SLVHMYASSGLIASAQSLLNESF--DLQSCNIIINRYLKNGDLERAETLFERVKSLH-DK 503

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
           ++W +M+ GY + G++  A   F+++  K+ V+W  MI+G   N+ +  A  L   M   
Sbjct: 504 VSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRC 563

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI---PDVPINNALITMYARCGAIV 381
           G KP   T+S +LS +    +L  G  IH ++ KT     PD+ + N+L++MYA+CGAI 
Sbjct: 564 GLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIE 623

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
           +A  IF +M + K+ VSWN+MI G + HG A +AL LFK M      P  +TF+ VLSAC
Sbjct: 624 DAYEIFAKM-VQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSAC 682

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
           +H+GL+  G + FK+M   Y I+P I+H+ S++D++GR G+L++A + I  +PF PD  V
Sbjct: 683 SHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISALPFTPDHTV 742

Query: 502 WGALLGAC----RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
           +GALLG C    R  +   +A+ AA  L++++P N+  +V L N+YA +GR D   E+R 
Sbjct: 743 YGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNAPGHVALCNVYAGLGRHDMEKEMRK 802

Query: 558 LMKSNNIKKPTGYSWV 573
            M    +KK  G SWV
Sbjct: 803 EMGIKGVKKTPGCSWV 818



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 146/481 (30%), Positives = 238/481 (49%), Gaps = 62/481 (12%)

Query: 11  MAKARKLFDEMPQRD----VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTV 66
           +  AR L D++PQR     VV W  ++S Y  +   G+L+EAR LF++MPER+ VT N +
Sbjct: 161 LVHARHLLDKIPQRGSINRVVYWTSLLSKYAKT---GYLDEARVLFEVMPERNIVTCNAM 217

Query: 67  ISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS 126
           ++GY K   M EA  LF  MP +NVVSW  M++    +G   +A+E FD MP R+  S +
Sbjct: 218 LTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWN 276

Query: 127 ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
            LV+GLI+NG++++A +V     SR     D+V ++N +I GY +   +EEA+ LF  + 
Sbjct: 277 TLVTGLIRNGDMEKAKQVFDAMPSR-----DVV-SWNAMIKGYIENDGMEEAKLLFGDMS 330

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246
                       ++N+V+W SM+  Y + GDV  A  +F +M ER+  SW  MISG+   
Sbjct: 331 ------------EKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWN 378

Query: 247 LDMEEASNLFVKMPHP-DTLTWNA--MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
               EA  LF++M    D ++ N   ++S     G L +    F+R+ ++  +    +  
Sbjct: 379 ELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVE---FRRLGEQ--LHAQVISN 433

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363
           G ET  D++G +           K   H ++     SSG++          ++ ++   D
Sbjct: 434 GWET-VDHDGRLA----------KSLVHMYA-----SSGLI-----ASAQSLLNESF--D 470

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           +   N +I  Y + G +  A  +FE +K L + VSW +MI G    G  + A  LF+ + 
Sbjct: 471 LQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLH 530

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
                   +T+  ++S      L  E       MV   G++P    ++ L+   G    L
Sbjct: 531 D----KDGVTWTVMISGLVQNELFAEAASLLSDMV-RCGLKPLNSTYSVLLSSAGATSNL 585

Query: 484 E 484
           +
Sbjct: 586 D 586


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 194/522 (37%), Positives = 301/522 (57%), Gaps = 22/522 (4%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW--NAMISGFLQNGDVANAIEFFDR 116
           D V  + ++S YA    +  +  +F S P  +  ++  N ++  +  N     A+  F  
Sbjct: 55  DPVAASKLLSSYALHRRLPASRGVFASFPNPHATTFLPNTLLRAYALNALPREAVAVFSA 114

Query: 117 MPGRDSASLSALVSGLIQNG--ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
           MP RDS + S L+  L   G   L      +VK GS  D         N LI  Y + G 
Sbjct: 115 MPHRDSFTYSFLIKALSSAGVAPLRAVHSHVVKLGSIED-----TYVGNALIDAYSKNGG 169

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
             +A K+F+++P            +R++VSWNS +    + G+V  AR +F++MLE+DT 
Sbjct: 170 FSDASKVFEEMP------------RRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTV 217

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
           SWNT++ GY    D+EEA  LF  MP  + ++W+ +VSGY + G++E+A   F +MP KN
Sbjct: 218 SWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKN 277

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           LV+W  M++ C  N   E A KLF QM+    + D     SIL+  +    L LG +IH+
Sbjct: 278 LVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAACAESGSLALGKRIHR 337

Query: 355 MV-TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
            V T+ +     + NALI M+ +CG I  A  +F+   + K+ VSWN +IGG A HG   
Sbjct: 338 YVRTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGD 397

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           +AL+ F  M+     P  +T I+VLSAC H G VEEGR++F +M  +YG+ P+IEH+  +
Sbjct: 398 KALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCM 457

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           +D++GR G +++A+DLIK MP++P++ +WG+LL ACR+H NVE A++A   L K++P N+
Sbjct: 458 IDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNA 517

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
             Y +L ++YA+ G+W D  + R+ MK    +K +G SW++ 
Sbjct: 518 GNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQKSSGSSWIEL 559



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 175/356 (49%), Gaps = 55/356 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K    + A K+F+EMP+RDVVSWN  ++  +     G +E AR +FD M E+D 
Sbjct: 160 LIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQ---GEVEGARRMFDEMLEKDT 216

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT++ GY K G++EEA +LF  MP RNVVSW+ ++SG+ + GD+  A   FD+MP +
Sbjct: 217 VSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTK 276

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  + + +VS   QNG ++EA ++  +        E  V A  +++    + G +   ++
Sbjct: 277 NLVTWTIMVSACAQNGLVEEAGKLFTQMKEA--SVELDVAAVVSILAACAESGSLALGKR 334

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE-QMLERDTFSWNTM 239
           +   +           +  R+    N++I  + K G +  A  +F+ +++E+D+ SWNT+
Sbjct: 335 IHRYVRTR--------QLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTI 386

Query: 240 ISGY----------------------------IHVLD-------MEEASNLFVKMPH--- 261
           I G+                            I+VL        +EE    F  M     
Sbjct: 387 IGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRYFANMERDYG 446

Query: 262 --PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
             P    +  M+    + G ++ A+D  K MP   N V W S+++ C  +K+ E A
Sbjct: 447 VVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLHKNVEYA 502



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 203/459 (44%), Gaps = 74/459 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSW--NVMISGYISSRGSGFLEEARYLFDIMPER 58
           ++S Y   R +  +R +F   P     ++  N ++  Y  +       EA  +F  MP R
Sbjct: 62  LLSSYALHRRLPASRGVFASFPNPHATTFLPNTLLRAYALN---ALPREAVAVFSAMPHR 118

Query: 59  DCVTW----------------------------------NTVISGYAKTGEMEEALRLFN 84
           D  T+                                  N +I  Y+K G   +A ++F 
Sbjct: 119 DSFTYSFLIKALSSAGVAPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFE 178

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            MP R+VVSWN+ ++  ++ G+V  A   FD M  +D+ S + L+ G  + G+++EA + 
Sbjct: 179 EMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEEAFK- 237

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
           L +C       E  V +++T++ GY ++G +E AR +FDK+P             +N+V+
Sbjct: 238 LFQCMP-----ERNVVSWSTVVSGYCKKGDMEMARVIFDKMPT------------KNLVT 280

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD--MEEASNLFVKMPH- 261
           W  M+   A+ G V  A ++F QM E    S    ++  + +L    E  S    K  H 
Sbjct: 281 WTIMVSACAQNGLVEEAGKLFTQMKEA---SVELDVAAVVSILAACAESGSLALGKRIHR 337

Query: 262 --------PDTLTWNAMVSGYAQIGNLELALDFF-KRMPQKNLVSWNSMIAGCETNKDYE 312
                     T   NA++  + + G +  A   F   + +K+ VSWN++I G   +   +
Sbjct: 338 YVRTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGD 397

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNAL 370
            A+  F QM+++G  PD  T  ++LS  + +  +  G +    + +   V+P +     +
Sbjct: 398 KALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCM 457

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           I +  R G I EA  + + M    N V W +++  C  H
Sbjct: 458 IDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLH 496


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 220/667 (32%), Positives = 365/667 (54%), Gaps = 98/667 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-----FLEEARY--LFD 53
           M+ GY  R ++  A+KLFD MP+RDVVSWN +ISGY+ +         FL+  R   +FD
Sbjct: 114 MLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFD 173

Query: 54  IMP-----------------------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                                           + D VT + ++  YAK  +++ +++ F+
Sbjct: 174 RTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFH 233

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG--------------RDSASLSALVS 130
           SMP +N VSW+A+I+G +QN D+   +E F  M                R  A LSAL  
Sbjct: 234 SMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRL 293

Query: 131 GLIQNG---ELDEAARVLV---------KCGSRCDGGEDL-------VRAYNTLIVGYGQ 171
           G   +G   + D    V++         KC +  D  +         +++YN +IVGY  
Sbjct: 294 GSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYA- 352

Query: 172 RGRVEEARKLFDKIPVN-----CDRGEGNVR------------FKRNIVSWNSMIMCYAK 214
             R ++   L D++ ++     C   +G++              + NI   N+++  Y K
Sbjct: 353 --RSDKGLGL-DEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGK 409

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV------KMPHPDTLTWN 268
            G +V A  +FE+M+ RD  SWN +I+ +    + E+  +LF+           D+    
Sbjct: 410 CGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGI 469

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           A++  Y++ G +E A     R+ ++ +VSWN++I+G    K  E A K F +M   G  P
Sbjct: 470 ALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDP 529

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIF 387
           D  T+++IL   + +V + LG QIH Q++ K +  D  I++ L+ MY++CG + + ++IF
Sbjct: 530 DNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIF 589

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
           E+    ++ V+WNAM+ G A HG   EAL++F+ M+   V P + TF++VL AC H GLV
Sbjct: 590 EKAPN-RDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLV 648

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           E+G  +F SM++ YG++P++EH++ +VDI+GR G++  A++LI+GMPFE D  +W  LL 
Sbjct: 649 EKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLS 708

Query: 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
            C++H NVE+A+ AA +++++EPE+S  YVLL N+YA+ G W++  ++R +M+ N +KK 
Sbjct: 709 ICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKE 768

Query: 568 TGYSWVD 574
            G SW++
Sbjct: 769 PGCSWIE 775



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 146/565 (25%), Positives = 259/565 (45%), Gaps = 65/565 (11%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           + A AR +  E      V+ N +I  YI       LE A  +FD MP+RD V+WN ++ G
Sbjct: 62  KQAHARMILTEFKPTVFVT-NCLIQMYIKCSD---LEFAFKVFDGMPQRDTVSWNAMLFG 117

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSAS 124
           YA  G++  A +LF++MP R+VVSWN++ISG+L NGD    I+ F +M GR     D  +
Sbjct: 118 YAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQM-GRMGTVFDRTT 176

Query: 125 LSALV---SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
            + ++   S L  +G   +   + VK G  CD     V   + L+  Y +  +++ + + 
Sbjct: 177 FAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCD-----VVTGSALLDMYAKCKKLDCSIQF 231

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM------LERDTFS 235
           F  +P            ++N VSW+++I    +  D+    E+F++M      + + TF+
Sbjct: 232 FHSMP------------EKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFA 279

Query: 236 WNTMISGYIHVLDM-EEASNLFVKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
                   +  L +  +     +K     D +   A +  Y +  NL  A   F  +P  
Sbjct: 280 SVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNH 339

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           NL S+N++I G   +               +G   D  + S      + I     G+Q+H
Sbjct: 340 NLQSYNAIIVGYARSD--------------KGLGLDEVSLSGAFRACAVIKGDLEGLQVH 385

Query: 354 QMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
            +  K++   ++ + NA++ MY +CGA+VEA ++FEEM + ++ VSWNA+I     +G  
Sbjct: 386 GLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEM-VSRDAVSWNAIIAAHEQNGNE 444

Query: 413 TEALELFKSMRSFKVLPTYITF--ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
            + L LF   R  K      +F  I+++   +  G++E+  +     +++   E  +  +
Sbjct: 445 EKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEK-----LHDRLAEQTVVSW 499

Query: 471 ASLVDIVGRHGRLEDAMDLIKG---MPFEPDKAVWGALLGACRVHNNVELA-QVAAEALM 526
            +++       + E+A         M  +PD   +  +L  C     VEL  Q+ A+ + 
Sbjct: 500 NAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIK 559

Query: 527 KVEPENSTPYVLLYNMYADVGRWDD 551
           K    ++     L +MY+  G   D
Sbjct: 560 KELQSDAYISSTLVDMYSKCGNMQD 584


>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
           gb|AF151215 and contains multiple PPR PF|01535 repeats
           [Arabidopsis thaliana]
          Length = 816

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 201/583 (34%), Positives = 344/583 (59%), Gaps = 29/583 (4%)

Query: 1   MISGYVKRR-EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE-- 57
           MI+  +K + ++ KA +LF ++P+++ VS+  MI+G++ +   G  +EA +L+   P   
Sbjct: 118 MITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRA---GRFDEAEFLYAETPVKF 174

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           RD V  N ++SGY + G+  EA+R+F  M  + VVS ++M+ G+ + G + +A   FDRM
Sbjct: 175 RDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRM 234

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
             R+  + +A++ G  + G  ++   + ++   R +G  D+    NTL V +        
Sbjct: 235 TERNVITWTAMIDGYFKAGFFEDGFGLFLRM--RQEG--DVKVNSNTLAVMFKACRDFVR 290

Query: 178 ARK------LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            R+      L  ++P+  D   GN           S++  Y+K G +  A+ +F  M  +
Sbjct: 291 YREGSQIHGLVSRMPLEFDLFLGN-----------SLMSMYSKLGYMGEAKAVFGVMKNK 339

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           D+ SWN++I+G +    + EA  LF KMP  D ++W  M+ G++  G +   ++ F  MP
Sbjct: 340 DSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMP 399

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           +K+ ++W +MI+   +N  YE A+  F +M  +   P+ +TFSS+LS ++ + DL  G+Q
Sbjct: 400 EKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQ 459

Query: 352 IHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           IH  V K  ++ D+ + N+L++MY +CG   +A  IF  +    N+VS+N MI G + +G
Sbjct: 460 IHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISE-PNIVSYNTMISGYSYNG 518

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
           F  +AL+LF  + S    P  +TF+++LSAC H G V+ G ++FKSM + Y IEP  +H+
Sbjct: 519 FGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHY 578

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
           A +VD++GR G L+DA +LI  MP +P   VWG+LL A + H  V+LA++AA+ L+++EP
Sbjct: 579 ACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEP 638

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +++TPYV+L  +Y+ +G+  D + +  + KS  IKK  G SW+
Sbjct: 639 DSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWI 681



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 148/317 (46%), Gaps = 30/317 (9%)

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           I   NS I  +A+ G++  A  IF QM  R   SW  MIS Y     M +A  +F +MP 
Sbjct: 50  IFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPV 109

Query: 262 PDTLTWNAMVSGYAQIGN---LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
             T ++NAM++  A I N   L  A + F  +P+KN VS+ +MI G      ++ A  L+
Sbjct: 110 RVTTSYNAMIT--AMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLY 167

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGI--------VDLHLGMQIHQMVTKTVIPDVPINNAL 370
            +  V+     R + +S + +S  +        V +  GM + ++V+ +         ++
Sbjct: 168 AETPVKF----RDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCS---------SM 214

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           +  Y + G IV+AR +F+ M   +NV++W AMI G    GF  +   LF  MR    +  
Sbjct: 215 VHGYCKMGRIVDARSLFDRMT-ERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKV 273

Query: 431 YITFISVL-SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
               ++V+  AC       EG Q    +V+   +E  +    SL+ +  + G + +A  +
Sbjct: 274 NSNTLAVMFKACRDFVRYREGSQ-IHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAV 332

Query: 490 IKGMPFEPDKAVWGALL 506
             G+    D   W +L+
Sbjct: 333 F-GVMKNKDSVSWNSLI 348


>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g53600, mitochondrial; Flags: Precursor
 gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 717

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 201/583 (34%), Positives = 344/583 (59%), Gaps = 29/583 (4%)

Query: 1   MISGYVKRR-EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE-- 57
           MI+  +K + ++ KA +LF ++P+++ VS+  MI+G++ +   G  +EA +L+   P   
Sbjct: 118 MITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRA---GRFDEAEFLYAETPVKF 174

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           RD V  N ++SGY + G+  EA+R+F  M  + VVS ++M+ G+ + G + +A   FDRM
Sbjct: 175 RDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRM 234

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
             R+  + +A++ G  + G  ++   + ++   R +G  D+    NTL V +        
Sbjct: 235 TERNVITWTAMIDGYFKAGFFEDGFGLFLRM--RQEG--DVKVNSNTLAVMFKACRDFVR 290

Query: 178 ARK------LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            R+      L  ++P+  D   GN           S++  Y+K G +  A+ +F  M  +
Sbjct: 291 YREGSQIHGLVSRMPLEFDLFLGN-----------SLMSMYSKLGYMGEAKAVFGVMKNK 339

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           D+ SWN++I+G +    + EA  LF KMP  D ++W  M+ G++  G +   ++ F  MP
Sbjct: 340 DSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMP 399

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           +K+ ++W +MI+   +N  YE A+  F +M  +   P+ +TFSS+LS ++ + DL  G+Q
Sbjct: 400 EKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQ 459

Query: 352 IHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           IH  V K  ++ D+ + N+L++MY +CG   +A  IF  +    N+VS+N MI G + +G
Sbjct: 460 IHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISE-PNIVSYNTMISGYSYNG 518

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
           F  +AL+LF  + S    P  +TF+++LSAC H G V+ G ++FKSM + Y IEP  +H+
Sbjct: 519 FGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHY 578

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
           A +VD++GR G L+DA +LI  MP +P   VWG+LL A + H  V+LA++AA+ L+++EP
Sbjct: 579 ACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEP 638

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +++TPYV+L  +Y+ +G+  D + +  + KS  IKK  G SW+
Sbjct: 639 DSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWI 681



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 146/317 (46%), Gaps = 30/317 (9%)

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           I   NS I  +A+ G++  A  IF QM  R   SW  MIS Y     M +A  +F +MP 
Sbjct: 50  IFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPV 109

Query: 262 PDTLTWNAMVSGYAQIGN---LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
             T ++NAM++  A I N   L  A + F  +P+KN VS+ +MI G      ++ A  L+
Sbjct: 110 RVTTSYNAMIT--AMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLY 167

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGI--------VDLHLGMQIHQMVTKTVIPDVPINNAL 370
            +  V+     R + +S + +S  +        V +  GM + ++V+ +         ++
Sbjct: 168 AETPVKF----RDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCS---------SM 214

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS-FKVLP 429
           +  Y + G IV+AR +F+ M   +NV++W AMI G    GF  +   LF  MR    V  
Sbjct: 215 VHGYCKMGRIVDARSLFDRMT-ERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKV 273

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
              T   +  AC       EG Q    +V+   +E  +    SL+ +  + G + +A  +
Sbjct: 274 NSNTLAVMFKACRDFVRYREGSQ-IHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAV 332

Query: 490 IKGMPFEPDKAVWGALL 506
             G+    D   W +L+
Sbjct: 333 F-GVMKNKDSVSWNSLI 348


>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
          Length = 839

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/583 (34%), Positives = 344/583 (59%), Gaps = 29/583 (4%)

Query: 1   MISGYVKRR-EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE-- 57
           MI+  +K + ++ KA +LF ++P+++ VS+  MI+G++ +   G  +EA +L+   P   
Sbjct: 118 MITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRA---GRFDEAEFLYAETPVKF 174

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           RD V  N ++SGY + G+  EA+R+F  M  + VVS ++M+ G+ + G + +A   FDRM
Sbjct: 175 RDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRM 234

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
             R+  + +A++ G  + G  ++   + ++   R +G  D+    NTL V +        
Sbjct: 235 TERNVITWTAMIDGYFKAGFFEDGFGLFLRM--RQEG--DVKVNSNTLAVMFKACRDFVR 290

Query: 178 ARK------LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            R+      L  ++P+  D   GN           S++  Y+K G +  A+ +F  M  +
Sbjct: 291 YREGSQIHGLVSRMPLEFDLFLGN-----------SLMSMYSKLGYMGEAKAVFGVMKNK 339

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           D+ SWN++I+G +    + EA  LF KMP  D ++W  M+ G++  G +   ++ F  MP
Sbjct: 340 DSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMP 399

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           +K+ ++W +MI+   +N  YE A+  F +M  +   P+ +TFSS+LS ++ + DL  G+Q
Sbjct: 400 EKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQ 459

Query: 352 IHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           IH  V K  ++ D+ + N+L++MY +CG   +A  IF  +    N+VS+N MI G + +G
Sbjct: 460 IHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISE-PNIVSYNTMISGYSYNG 518

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
           F  +AL+LF  + S    P  +TF+++LSAC H G V+ G ++FKSM + Y IEP  +H+
Sbjct: 519 FGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHY 578

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
           A +VD++GR G L+DA +LI  MP +P   VWG+LL A + H  V+LA++AA+ L+++EP
Sbjct: 579 ACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEP 638

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +++TPYV+L  +Y+ +G+  D + +  + KS  IKK  G SW+
Sbjct: 639 DSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWI 681



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 146/317 (46%), Gaps = 30/317 (9%)

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           I   NS I  +A+ G++  A  IF QM  R   SW  MIS Y     M +A  +F +MP 
Sbjct: 50  IFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPV 109

Query: 262 PDTLTWNAMVSGYAQIGN---LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
             T ++NAM++  A I N   L  A + F  +P+KN VS+ +MI G      ++ A  L+
Sbjct: 110 RVTTSYNAMIT--AMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLY 167

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGI--------VDLHLGMQIHQMVTKTVIPDVPINNAL 370
            +  V+     R + +S + +S  +        V +  GM + ++V+ +         ++
Sbjct: 168 AETPVKF----RDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCS---------SM 214

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS-FKVLP 429
           +  Y + G IV+AR +F+ M   +NV++W AMI G    GF  +   LF  MR    V  
Sbjct: 215 VHGYCKMGRIVDARSLFDRMT-ERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKV 273

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
              T   +  AC       EG Q    +V+   +E  +    SL+ +  + G + +A  +
Sbjct: 274 NSNTLAVMFKACRDFVRYREGSQ-IHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAV 332

Query: 490 IKGMPFEPDKAVWGALL 506
             G+    D   W +L+
Sbjct: 333 F-GVMKNKDSVSWNSLI 348


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 205/532 (38%), Positives = 298/532 (56%), Gaps = 68/532 (12%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L  + YL     E      N +I+   ++G+++ AL +F+ M A+N VSWN+++ G  ++
Sbjct: 46  LVRSDYLTKPSDEDQIFPLNKIIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKD 105

Query: 105 -GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN 163
              +  A + FD +P  D+ S                                     YN
Sbjct: 106 PSRMMEAHQLFDEIPEPDTFS-------------------------------------YN 128

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
            ++  Y + G  E+A+  F+++P             ++  SWN+MI  YA+ G++  AR 
Sbjct: 129 IMLSCYVRNGNFEKAQSFFNRMPF------------KDAASWNTMITGYARRGEMEKARV 176

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           +F  M+E++  SWN MISGYI   D+E+A++ F   P    + W AM++GY +   +ELA
Sbjct: 177 LFYSMMEKNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTAMITGYMKAKKVELA 236

Query: 284 LDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
              FK M  +KNLV+WN+MI+G   N   E  +KLF  M  EG +P+    SS L   S 
Sbjct: 237 EAMFKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSE 296

Query: 343 IVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
           +  L LG QIHQ+V                MY +CG + +A  +FE MK  K+VV+WNAM
Sbjct: 297 LSALCLGRQIHQIV----------------MYCKCGELGDAWKLFEAMKK-KDVVAWNAM 339

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I G A HG A +AL LF  MR  K  P +ITF++VL AC HAGLV+ G  +F SMV +Y 
Sbjct: 340 ISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVRDYR 399

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           +EPR +H+  +VD++GR G++E+A+ LI+ MPF P  AV+G LLGACRVH NVELA+ AA
Sbjct: 400 VEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAA 459

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           E L++++P N+  YV L N+YA    W+D   VR  MK +N+ K  GYSW++
Sbjct: 460 EKLLELDPRNAAGYVQLANIYASKNLWEDVARVRKRMKESNVVKVPGYSWIE 511



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 196/392 (50%), Gaps = 46/392 (11%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGY 70
           M +A +LFDE+P+ D  S+N+M+S Y+ +   G  E+A+  F+ MP +D  +WNT+I+GY
Sbjct: 109 MMEAHQLFDEIPEPDTFSYNIMLSCYVRN---GNFEKAQSFFNRMPFKDAASWNTMITGY 165

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
           A+ GEME+A  LF SM  +N VSWNAMISG+++ GD+  A  FF   P R   + +A+++
Sbjct: 166 ARRGEMEKARVLFYSMMEKNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTAMIT 225

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           G ++  +++ A  +      +    ++LV  +N +I GY +  R E+  KLF  +     
Sbjct: 226 GYMKAKKVELAEAMFKDMTVK----KNLV-TWNAMISGYVENSRPEDGLKLFRAMLEEGI 280

Query: 191 RGEGN--------------VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           R   +              +   R I      I+ Y K G++  A ++FE M ++D  +W
Sbjct: 281 RPNSSGLSSALLGCSELSALCLGRQI----HQIVMYCKCGELGDAWKLFEAMKKKDVVAW 336

Query: 237 NTMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           N MISGY    + E+A  LF +M      PD +T+ A++      G +++ + +F  M +
Sbjct: 337 NAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVR 396

Query: 293 KNLVS-----WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
              V      +  M+         E A+KL   M     +P    F ++L    G   +H
Sbjct: 397 DYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPF---RPHAAVFGTLL----GACRVH 449

Query: 348 LGMQIHQMVTKTVIPDVPINNA----LITMYA 375
             +++ +   + ++   P N A    L  +YA
Sbjct: 450 KNVELAEFAAEKLLELDPRNAAGYVQLANIYA 481



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 193/446 (43%), Gaps = 80/446 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+  V+  ++  A  +F  M  ++ VSWN ++ G   S+    + EA  LFD +PE D 
Sbjct: 67  IIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGI--SKDPSRMMEAHQLFDEIPEPDT 124

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            ++N ++S Y + G  E+A   FN MP ++  SWN MI+G+ + G++  A   F  M  +
Sbjct: 125 FSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAASWNTMITGYARRGEMEKARVLFYSMMEK 184

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++SG I+ G+L++AA        R       V A+  +I GY +  +VE A  
Sbjct: 185 NEVSWNAMISGYIECGDLEKAAHFFKAAPFRG------VVAWTAMITGYMKAKKVELAEA 238

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +F  + V           K+N+V+WN+MI  Y +        ++F  MLE      ++ +
Sbjct: 239 MFKDMTV-----------KKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGL 287

Query: 241 SG----------------------YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
           S                       Y    ++ +A  LF  M   D + WNAM+SGYAQ G
Sbjct: 288 SSALLGCSELSALCLGRQIHQIVMYCKCGELGDAWKLFEAMKKKDVVAWNAMISGYAQHG 347

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL- 337
           N E AL                    C           LF +M+    KPD  TF ++L 
Sbjct: 348 NAEKAL--------------------C-----------LFHEMRDSKTKPDWITFVAVLL 376

Query: 338 -SMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
               +G+VD+ +      +    V P       ++ +  R G + EA  +   M    + 
Sbjct: 377 ACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHA 436

Query: 397 VSWNAMIGGCASHG------FATEAL 416
             +  ++G C  H       FA E L
Sbjct: 437 AVFGTLLGACRVHKNVELAEFAAEKL 462


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 194/522 (37%), Positives = 297/522 (56%), Gaps = 22/522 (4%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW--NAMISGFLQNGDVANAIEFFDR 116
           D +  + +IS YA    +  + R+F S P     ++  N ++  +  N     A+  F  
Sbjct: 89  DPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSA 148

Query: 117 MPGRDSASLSALVSGLIQNG--ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
           MP RDS + S L+  L  +G   L      +VK GS  D         N LI  Y + G 
Sbjct: 149 MPQRDSFTYSFLIKALSSSGLTPLRAVHSHVVKLGSIED-----TYVGNALIDAYSKNGG 203

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
             +A K+F+++P            +R+ VSWNS +    + G+V SAR +F++M ++DT 
Sbjct: 204 FLDASKVFEEMP------------RRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTV 251

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
           SWNT++ GY     ME+A  LF  MP  + ++W+ +VSGY + G++E+A   F +MP KN
Sbjct: 252 SWNTVLDGYTKAGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKN 311

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           LV+W  M++ C  N   E A +LF QM+    + D     SIL+  +    L LG +IH+
Sbjct: 312 LVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHR 371

Query: 355 MV-TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
            V T+ +     + NA+I M+ +CG +  A  +F+     K+ VSWN +IGG A HG   
Sbjct: 372 YVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGD 431

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           +AL+ F  M+     P  +T I+VLSAC H G VEEGRQHF +M  +YGI P+IEH+  +
Sbjct: 432 KALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCM 491

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           +D++GR G +E+A+ LIK MP++P++ +WG+LL ACR+H NVE A++A   L K++P N+
Sbjct: 492 IDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNA 551

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
             Y +L N+YA+ G+W D  + R+ MK    +K  G SW++ 
Sbjct: 552 GNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSAGSSWIEL 593



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 172/356 (48%), Gaps = 55/356 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K      A K+F+EMP+RD VSWN  ++  +     G +  AR +FD MP++D 
Sbjct: 194 LIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQ---GEVASARRMFDEMPDKDT 250

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNTV+ GY K G+ME+A  LF  MP RNVVSW+ ++SG+ + GD+  A   FD+MP +
Sbjct: 251 VSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTK 310

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  + + +VS   QNG ++EA R+  +   +    E  V A  +++    + G +   ++
Sbjct: 311 NLVTWTIMVSACAQNGLVEEAGRLFTQM--KEAAVELDVAAVVSILAACAESGSLALGKR 368

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE-QMLERDTFSWNTM 239
           +   +           +  R+    N+MI  + K G V  A  +F+ ++ E+D+ SWNT+
Sbjct: 369 IHRYVRTR--------QLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTI 420

Query: 240 ISGYIHVLDMEEASNLFVKMP----HPDTLT----------------------------- 266
           I G+      ++A + F +M      PD +T                             
Sbjct: 421 IGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYG 480

Query: 267 -------WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
                  +  M+    + G +E A+   K MP   N V W S+++ C  +K+ E A
Sbjct: 481 IVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHKNVEYA 536



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 210/456 (46%), Gaps = 68/456 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSW--NVMISGYISSRGSGFLEEARYLFDIMPER 58
           +IS Y  +R +  +R++F   P     ++  N ++  Y  +        A  LF  MP+R
Sbjct: 96  LISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYALN---ALPHAAVSLFSAMPQR 152

Query: 59  DCVTW----------------------------------NTVISGYAKTGEMEEALRLFN 84
           D  T+                                  N +I  Y+K G   +A ++F 
Sbjct: 153 DSFTYSFLIKALSSSGLTPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFE 212

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            MP R+ VSWN+ ++  ++ G+VA+A   FD MP +D+ S + ++ G  + G++++A   
Sbjct: 213 EMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFE- 271

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
           L +C       E  V +++T++ GY ++G +E AR +FDK+P             +N+V+
Sbjct: 272 LFQCMP-----ERNVVSWSTVVSGYCKKGDIEMARVIFDKMPT------------KNLVT 314

Query: 205 WNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIH--VLDMEEASNLFVK 258
           W  M+   A+ G V  A  +F QM    +E D  +  ++++       L + +  + +V+
Sbjct: 315 WTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVR 374

Query: 259 MPH--PDTLTWNAMVSGYAQIGNLELALDFF-KRMPQKNLVSWNSMIAGCETNKDYEGAI 315
                  T   NAM+  + + G +  A   F   + +K+ VSWN++I G   +   + A+
Sbjct: 375 TRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKAL 434

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITM 373
             F QM+++G +PD  T  ++LS  + +  +  G Q    + +   ++P +     +I +
Sbjct: 435 DFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCMIDL 494

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
             R G I EA  + + M    N V W +++  C  H
Sbjct: 495 LGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLH 530



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 140/357 (39%), Gaps = 72/357 (20%)

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW--NAMVSGYAQIGNL 280
           ++ +  L  D  + + +IS Y     +  +  +F   P+P   T+  N ++  YA     
Sbjct: 80  QLLKHGLHLDPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYALNALP 139

Query: 281 ELALDFFKRMPQKNLVSW----------------------------------NSMIAGCE 306
             A+  F  MPQ++  ++                                  N++I    
Sbjct: 140 HAAVSLFSAMPQRDSFTYSFLIKALSSSGLTPLRAVHSHVVKLGSIEDTYVGNALIDAYS 199

Query: 307 TNKDYEGAIKLFIQM-------------------------QVEGEKPDRHTFS--SILSM 339
            N  +  A K+F +M                         ++  E PD+ T S  ++L  
Sbjct: 200 KNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDG 259

Query: 340 SSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
            +    +    ++ Q + +    +V   + +++ Y + G I  AR+IF++M   KN+V+W
Sbjct: 260 YTKAGKMEDAFELFQCMPER---NVVSWSTVVSGYCKKGDIEMARVIFDKMP-TKNLVTW 315

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMV 458
             M+  CA +G   EA  LF  M+   V       +S+L+ACA +G +  G++ H     
Sbjct: 316 TIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRT 375

Query: 459 NEYGIEPRIEHFA-SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
            + G   R  H   +++D+  + G +  A  +      E D   W  ++G   +H +
Sbjct: 376 RQLG---RSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGH 429


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/568 (34%), Positives = 318/568 (55%), Gaps = 59/568 (10%)

Query: 13  KARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAK 72
           +AR++FD +  RD  SW +M+S Y  S   G L  A+ +FD MP     +W  ++S +A 
Sbjct: 10  RARQIFDAIADRDSFSWGIMLSIYARS---GDLSNAKGVFDRMPRWSLGSWTALLSAFAL 66

Query: 73  TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGL 132
           +G  EEA  LF++M  R++++W  M++      ++ +A   FD+MP RD           
Sbjct: 67  SGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERD----------- 115

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
                                     + A+  ++    +RG++E AR+ FD++P      
Sbjct: 116 --------------------------LVAWTAMLAANAERGQMENARETFDQMP------ 143

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
                 +RN+ SW S++  Y ++GDV +A  +F+ M E +  +W  M++GY    D+  A
Sbjct: 144 ------ERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVVRA 197

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
              F  MP  D + W AM+S YA  G+L    + F+RMP+++L+SW +M+A    N   E
Sbjct: 198 KRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDLLE 257

Query: 313 GAIKLFIQMQ-----VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT-KTVIPDVPI 366
            + +LF +M       +G  P+R TF ++L   S +  L  G +IH  V  +    D+ +
Sbjct: 258 ESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVV 317

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
           +NAL+  Y RCGA+ +A+I+F+ M+  ++V+SW++MI   A  G   EA+EL+  M S  
Sbjct: 318 SNALVNFYGRCGALGDAKIVFDGMRR-RDVISWSSMISAFAQRGRVDEAMELYHRMLSEG 376

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
            LP  I FISVL AC+++G+VE     F+S+V +  +EP +EH+A +VD++GR G+L DA
Sbjct: 377 TLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDA 436

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
            DL++ MPF P   ++  +L AC+++ +VE  + AAE + +++PENS+PY+ L N+Y+  
Sbjct: 437 EDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAA 496

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            R  DA  +R LM+   IKK  G SW++
Sbjct: 497 KRPKDAARIRKLMEERGIKKKPGCSWIE 524



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/453 (27%), Positives = 218/453 (48%), Gaps = 69/453 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+S Y +  +++ A+ +FD MP+  + SW  ++S +  S   G  EEA+ LFD M ERD 
Sbjct: 29  MLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALS---GHHEEAKTLFDTMQERDL 85

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           + W  +++  A    +E+A   F+ MP R++V+W AM++   + G + NA E FD+MP R
Sbjct: 86  IAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLAANAERGQMENARETFDQMPER 145

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S ++L+S   ++G++  A RV            +LV A+  ++ GY   G V  A++
Sbjct: 146 NLFSWTSLLSAYGRSGDVKAAGRVFDSMPE-----WNLV-AWTAMLTGYSLSGDVVRAKR 199

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            FD +P            +R++++W +M+  YA  G +   REIF++M ERD  SW TM+
Sbjct: 200 AFDSMP------------ERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMV 247

Query: 241 SGYIHVLDMEEASNLFVKMPH---------PDTLTW------------------------ 267
           +  +    +EE+  LF +MP          P+ +T+                        
Sbjct: 248 AALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVA 307

Query: 268 -----------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
                      NA+V+ Y + G L  A   F  M +++++SW+SMI+        + A++
Sbjct: 308 ERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAME 367

Query: 317 LFIQMQVEGEKPDRHTFSSIL--SMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITM 373
           L+ +M  EG  PD   F S+L    +SG+V+   G     +V  T V P +     ++ +
Sbjct: 368 LYHRMLSEGTLPDDIIFISVLFACSNSGVVEAS-GDFFRSIVGDTQVEPTLEHYACMVDV 426

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
             R G + +A  +   M      + +  M+  C
Sbjct: 427 LGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSAC 459



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 157/373 (42%), Gaps = 75/373 (20%)

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM---------------------- 249
           + + G V  AR+IF+ + +RD+FSW  M+S Y    D+                      
Sbjct: 2   FGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALL 61

Query: 250 ---------EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
                    EEA  LF  M   D + W  M++  A   N+E A   F +MP+++LV+W +
Sbjct: 62  SAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTA 121

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS--SILSMSSGIVDLHLGMQIHQ---- 354
           M+A        E A + F QM      P+R+ FS  S+LS      D+    ++      
Sbjct: 122 MLAANAERGQMENARETFDQM------PERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPE 175

Query: 355 --------MVT-----------KTVIPDVPINN-----ALITMYARCGAIVEARIIFEEM 390
                   M+T           K     +P  +     A+++ YA  G +   R IF+ M
Sbjct: 176 WNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRM 235

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL-----PTYITFISVLSACAHAG 445
              ++++SW  M+     +    E+ ELF  M     L     P  +TFI++L AC+  G
Sbjct: 236 P-ERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLG 294

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
            + EGR+   + V E G +  +    +LV+  GR G L DA  +  GM    D   W ++
Sbjct: 295 ALAEGRK-IHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMR-RRDVISWSSM 352

Query: 506 LGACRVHNNVELA 518
           + A      V+ A
Sbjct: 353 ISAFAQRGRVDEA 365


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/518 (38%), Positives = 297/518 (57%), Gaps = 52/518 (10%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQ-NGDVANAIEFFDRM 117
           D V+ N  I+ + +  ++E A  +F  M  R  V+WN M+SG+ +  G V  A E FD++
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P  DS S                                     YN ++V Y +   VE 
Sbjct: 132 PEPDSVS-------------------------------------YNIMLVCYLRSYGVEA 154

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           A   F+K+PV            ++I SWN++I  +A+ G +  A ++F  M E++  SW+
Sbjct: 155 ALAFFNKMPV------------KDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWS 202

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
            MISGY+   D+E A  L+  +     +   AM++GY + G +ELA   F+RM  KNLV+
Sbjct: 203 AMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVT 262

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WNSMIAG   N   E  +K+F  M     +P+  + SS+L   S +  L LG Q+HQ+V+
Sbjct: 263 WNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVS 322

Query: 358 KTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           K+ +  D     +LI+MY +CG +  A  +F EM   K+V+SWNAMI G A HG   +AL
Sbjct: 323 KSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPR-KDVISWNAMISGYAQHGAGRKAL 381

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
            LF  MR+  + P +ITF++V+ AC HAG V+ G Q+FKSM  E+GIE +  H+  ++D+
Sbjct: 382 HLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDL 441

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           +GR GRL++A+ LIK MPF+P  A++G LLGACR+H N++LA+ AA  L+ ++P ++T Y
Sbjct: 442 LGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGY 501

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           V L N+YA   +WD   +VR +MK +N+ K  GYSW++
Sbjct: 502 VQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIE 539



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 130/451 (28%), Positives = 215/451 (47%), Gaps = 96/451 (21%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           I+ +V+  ++  AR +F++M  R  V+WN M+SGY  ++ +G ++EA  LFD +PE D V
Sbjct: 80  IASFVRACDLESARNVFEKMSVRTTVTWNTMLSGY--TKVAGKVKEAHELFDKIPEPDSV 137

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           ++N ++  Y ++  +E AL  FN MP +++ SWN +ISGF QNG +  A + F  MP ++
Sbjct: 138 SYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKN 197

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S SA++SG +++G+L EAA  L K     + G   V     ++ GY + G+VE A ++
Sbjct: 198 GVSWSAMISGYVEHGDL-EAAEELYK-----NVGMKSVVVETAMLTGYMKFGKVELAERI 251

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----------- 230
           F ++ V            +N+V+WNSMI  Y +        ++F+ M+E           
Sbjct: 252 FQRMAV------------KNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLS 299

Query: 231 ----------------------------RDTFSWNTMISGYIHVLDMEEASNLFVKMPHP 262
                                       +DT +  ++IS Y    D++ A  LF++MP  
Sbjct: 300 SVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRK 359

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D ++WNAM+SGYAQ G    AL  F +M    +                           
Sbjct: 360 DVISWNAMISGYAQHGAGRKALHLFDKMRNGTM--------------------------- 392

Query: 323 VEGEKPDRHTFSSIL--SMSSGIVDLHLGMQIHQMVTKTV-IPDVPIN-NALITMYARCG 378
               KPD  TF +++     +G VD  LG+Q  + + K   I   P++   +I +  R G
Sbjct: 393 ----KPDWITFVAVILACNHAGFVD--LGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAG 446

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            + EA  + +EM    +   +  ++G C  H
Sbjct: 447 RLDEAVSLIKEMPFKPHAAIYGTLLGACRIH 477



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 163/304 (53%), Gaps = 31/304 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  Y++   +  A   F++MP +D+ SWN +ISG+     +G +++A  LF +MPE++ 
Sbjct: 142 MLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQ---NGQMQKAFDLFSVMPEKNG 198

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W+ +ISGY + G++E A  L+ ++  ++VV   AM++G+++ G V  A   F RM  +
Sbjct: 199 VSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVK 258

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR----AYNTLIVGYGQRGRVE 176
           +  + +++++G ++N   ++  +V           E  VR    + +++++G      + 
Sbjct: 259 NLVTWNSMIAGYVENCRAEDGLKVFKTM------IESRVRPNPLSLSSVLLGCSNLSALP 312

Query: 177 EAR---KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
             R   +L  K P++           ++  +  S+I  Y K GD+ SA ++F +M  +D 
Sbjct: 313 LGRQMHQLVSKSPLS-----------KDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDV 361

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKR 289
            SWN MISGY       +A +LF KM +    PD +T+ A++      G ++L + +FK 
Sbjct: 362 ISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKS 421

Query: 290 MPQK 293
           M ++
Sbjct: 422 MKKE 425



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 162/328 (49%), Gaps = 31/328 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +ISG+ +  +M KA  LF  MP+++ VSW+ MISGY+     G LE A  L+  +  +  
Sbjct: 173 LISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVE---HGDLEAAEELYKNVGMKSV 229

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V    +++GY K G++E A R+F  M  +N+V+WN+MI+G+++N    + ++ F  M   
Sbjct: 230 VVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIES 289

Query: 121 ----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               +  SLS+++ G   N       R + +  S+    +D   A  +LI  Y + G ++
Sbjct: 290 RVRPNPLSLSSVLLG-CSNLSALPLGRQMHQLVSKSPLSKD-TTACTSLISMYCKCGDLD 347

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERD 232
            A KLF ++P            +++++SWN+MI  YA+ G    A  +F++M    ++ D
Sbjct: 348 SAWKLFLEMP------------RKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPD 395

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFF 287
             ++  +I    H   ++     F  M          + +  ++    + G L+ A+   
Sbjct: 396 WITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLI 455

Query: 288 KRMPQK-NLVSWNSMIAGCETNKDYEGA 314
           K MP K +   + +++  C  +K+ + A
Sbjct: 456 KEMPFKPHAAIYGTLLGACRIHKNLDLA 483



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 27/197 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +IS Y K  ++  A KLF EMP++DV+SWN MISGY +  G+G   +A +LFD M     
Sbjct: 336 LISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGY-AQHGAG--RKALHLFDKMRNGTM 392

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
           + D +T+  VI      G ++  ++ F SM          V +  +I    + G +  A+
Sbjct: 393 KPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAV 452

Query: 112 EFFDRMPGRDSASLSALVSG---LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
                MP +  A++   + G   + +N +L E A              +L+    T   G
Sbjct: 453 SLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFA------------ARNLLNLDPTSATG 500

Query: 169 YGQRGRVEEARKLFDKI 185
           Y Q   +  A   +D++
Sbjct: 501 YVQLANIYAATNKWDQV 517


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 221/683 (32%), Positives = 345/683 (50%), Gaps = 133/683 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGYV+  ++  ARKLFDEMP+++V SWN +++GY        + EAR LFD MPER+ 
Sbjct: 270 MISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYR---MSEARELFDQMPERNS 326

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM---PAR---------------------------- 89
           V+W  +ISGY    +  EA  +F  M    AR                            
Sbjct: 327 VSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPI 386

Query: 90  --------NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                   +VV  +A+++ + +NG +  A+ FF+ MP R+  S + +++   Q G LD+A
Sbjct: 387 AIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDA 446

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            ++  +        E  V     ++  Y Q GR+++AR +FD+I               N
Sbjct: 447 IQLYERV------PEQTVATKTAMMTAYAQVGRIQKARLIFDEI------------LNPN 488

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM-- 259
           +V+WN++I  Y + G +  A+++F++M  +++ SW  MI+G++   +  EA  L +++  
Sbjct: 489 VVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHR 548

Query: 260 ----PHPDTLT---------------------------------WNAMVSGYAQIGNLEL 282
               P   + T                                  N ++S YA+ GN+E 
Sbjct: 549 SGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVED 608

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETN---------------KDY---------------- 311
               F+ +  K+ VSWNS+I+G   N               +D                 
Sbjct: 609 GSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHG 668

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNAL 370
           E A+ LF+ M   G KP++ T +S+LS    +  + LG Q H ++ K      + + N+L
Sbjct: 669 EVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSL 728

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           ITMY +CG   +   +FEEM    ++++WNA++ GCA +G   EA+++F+ M    +LP 
Sbjct: 729 ITMYFKCG-YEDGFCVFEEMP-EHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPD 786

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            ++F+ VL AC+HAGLV+EG  HF SM  +YGI P + H+  +VD++GR G L +A  LI
Sbjct: 787 QMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALI 846

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           + MP +PD  +W ALLGACR+H NVEL Q  AE L ++    S  YVLL N++A  G WD
Sbjct: 847 ENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWD 906

Query: 551 DANEVRLLMKSNNIKKPTGYSWV 573
              E+R LMK   + K  G SW+
Sbjct: 907 KVAEIRKLMKDQGLTKEPGISWI 929



 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 182/587 (31%), Positives = 292/587 (49%), Gaps = 103/587 (17%)

Query: 13  KARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAK 72
           +AR++F+EM QRDVVSWN MI+GY     +G ++EAR LFD    ++  TW  +++GYAK
Sbjct: 189 EARRVFNEMIQRDVVSWNSMINGY---SQNGKVDEARLLFDAFVGKNIRTWTILLTGYAK 245

Query: 73  TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGL 132
            G +EEA  +F SM  RNVVSWNAMISG++QNGD+ NA + FD MP ++ AS +++V+G 
Sbjct: 246 EGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGY 305

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
                + EA  +  +   R         ++  +I GY       EA  +F K+     R 
Sbjct: 306 CHCYRMSEARELFDQMPERNS------VSWMVMISGYVHISDYWEAWDVFVKMCRTVARP 359

Query: 193 E--------------------GNVR-------FKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           +                    G++R       ++ ++V  ++++  Y + G +  A   F
Sbjct: 360 DQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFF 419

Query: 226 EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP------------------------- 260
           E M ER+ +SW TMI+ +     +++A  L+ ++P                         
Sbjct: 420 ETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARL 479

Query: 261 ------HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
                 +P+ + WNA+++GY Q G L+ A D F++MP KN  SW +MIAG   N++   A
Sbjct: 480 IFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREA 539

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITM 373
           ++L I++   G  P   +F+S LS  + I D+ +G  IH +  KT    +  + N LI+M
Sbjct: 540 LELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISM 599

Query: 374 YARCGAIV-------------------------------EARIIFEEMKLLKNVVSWNAM 402
           YA+CG +                                +AR++FE+M   ++VVSW A+
Sbjct: 600 YAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMP-KRDVVSWTAI 658

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I      G    AL+LF  M +  + P  +T  S+LSAC + G ++ G Q F +++ + G
Sbjct: 659 ISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQ-FHALIFKLG 717

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
            +  +    SL+ +  + G  ED   + + MP E D   W A+L  C
Sbjct: 718 FDTFLFVGNSLITMYFKCG-YEDGFCVFEEMP-EHDLITWNAVLVGC 762



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 162/563 (28%), Positives = 268/563 (47%), Gaps = 70/563 (12%)

Query: 56  PERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
           P+      NT I    + G +EEA R+FN M  R+VVSWN+MI+G+ QNG V  A   FD
Sbjct: 167 PQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFD 226

Query: 116 RMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
              G++  + + L++G  + G ++EA  V      R       V ++N +I GY Q G +
Sbjct: 227 AFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERN------VVSWNAMISGYVQNGDL 280

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
           + ARKLFD++P            ++N+ SWNS++  Y     +  ARE+F+QM ER++ S
Sbjct: 281 KNARKLFDEMP------------EKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVS 328

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHP--------------------------------- 262
           W  MISGY+H+ D  EA ++FVKM                                    
Sbjct: 329 WMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAI 388

Query: 263 ------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
                 D +  +A+++ Y + G+L+LA+ FF+ MP++N  SW +MIA        + AI+
Sbjct: 389 KTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQ 448

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYAR 376
           L+       E+    T ++  +M +    +    +   +  + + P+V   NA+I  Y +
Sbjct: 449 LY-------ERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQ 501

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
            G + EA+ +F++M  +KN  SW AMI G   +  + EALEL   +     +P+  +F S
Sbjct: 502 NGMLKEAKDLFQKMP-VKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTS 560

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
            LSACA+ G VE GR    S+  + G +        L+ +  + G +ED   + + +  +
Sbjct: 561 ALSACANIGDVEIGRV-IHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVK 619

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
            D   W +L+     +  ++ A+V  E   K+   +   +  + + Y   G  + A ++ 
Sbjct: 620 -DTVSWNSLISGLSENYMLDDARVVFE---KMPKRDVVSWTAIISAYVQAGHGEVALDLF 675

Query: 557 LLMKSNNIKKPTGYSWVDFSPCG 579
           L M +  IK          S CG
Sbjct: 676 LDMLARGIKPNQLTVTSLLSACG 698


>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
          Length = 563

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 199/530 (37%), Positives = 312/530 (58%), Gaps = 21/530 (3%)

Query: 49  RYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG-DV 107
           R+   +   R  V  N  I+  A+ G++  A R+F++MP R+ VSWNA+++   + G D+
Sbjct: 5   RHHAALASSRLLVRDNQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDL 64

Query: 108 ANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV 167
             A   FD MP R+  S +++++G + +G+L  A+    +   R       V ++N ++ 
Sbjct: 65  PAARSLFDDMPSRNVISWNSIIAGCLAHGDLAAASAYFARAPRRN------VASWNAMLA 118

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
           G  + G +E+AR LFD++P            +RN+VS+ +M+   A+ G+V SARE+F+ 
Sbjct: 119 GLVRLGSMEDARSLFDQMP------------ERNVVSYTTMVDGLARCGEVASARELFDA 166

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
           M  R+  SW  MISGY+    +EEA  LF  MP  + +   AM++GY + G+L+ A   F
Sbjct: 167 MPTRNLVSWAAMISGYVDNNMLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLF 226

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
             +  K+++SWN++I+G   N   E A KL+I M  EG KPD+ T  ++L+  S +  L 
Sbjct: 227 DGIRAKDVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLR 286

Query: 348 LGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
            G   H +V K ++   + I NAL+TMY++CG + E+ ++F  +K  +++VSWN +I   
Sbjct: 287 QGRSTHAVVIKAMLESSISICNALMTMYSKCGNVDESELVFMSLKS-QDIVSWNTIIAAY 345

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
           A HG   + + LF  M    ++P  ITF+S+LSAC HAG V+E  + F  M ++Y I PR
Sbjct: 346 AQHGRYQKVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPR 405

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM 526
            EH+A +VDI+ R G+LE A   IK MP E +K VWG LL A + H NV+L ++AA+ L+
Sbjct: 406 AEHYACIVDILSRAGQLEKACSYIKEMPSEAEKNVWGTLLCASQTHGNVQLGELAAKMLV 465

Query: 527 KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
             + E+S  YV+L N+YA  G W + N VR  MK   +KK  G+SW + +
Sbjct: 466 LSDFESSGAYVMLSNIYAAAGMWGEVNRVRSQMKEKGVKKQPGHSWTEIA 515



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 153/515 (29%), Positives = 252/515 (48%), Gaps = 75/515 (14%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           I+   +  ++A AR++FD MP+RD VSWN +++     R    L  AR LFD MP R+ +
Sbjct: 23  ITALARAGDVAAARRVFDAMPRRDAVSWNALLTALW--RAGRDLPAARSLFDDMPSRNVI 80

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           +WN++I+G    G++  A   F   P RNV SWNAM++G ++ G + +A   FD+MP R+
Sbjct: 81  SWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDARSLFDQMPERN 140

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S + +V GL + GE+  A  +     +R     +LV ++  +I GY     +EEARKL
Sbjct: 141 VVSYTTMVDGLARCGEVASARELFDAMPTR-----NLV-SWAAMISGYVDNNMLEEARKL 194

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           F+ +P            ++N+V+  +MI  Y K GD+ +AR +F+ +  +D  SWN +IS
Sbjct: 195 FEAMP------------EKNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIIS 242

Query: 242 GYIHVLDMEEASNLFVKMPH----PDTLTW------------------------------ 267
           GY+H    EEA+ L++ M      PD  T                               
Sbjct: 243 GYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTHAVVIKAMLES 302

Query: 268 -----NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
                NA+++ Y++ GN++ +   F  +  +++VSWN++IA    +  Y+  I LF +M+
Sbjct: 303 SISICNALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEME 362

Query: 323 VEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGA 379
           + G  P+  TF S+LS    +G VD  L +    M +K  I P       ++ + +R G 
Sbjct: 363 LCGLIPNDITFLSMLSACGHAGRVDESLKL-FDLMFSKYAISPRAEHYACIVDILSRAGQ 421

Query: 380 IVEARIIFEEM--KLLKNVVSWNAMIGGCASHGFATEALELFKSM---RSFKVLPTYITF 434
           + +A    +EM  +  KNV  W  ++    +HG   +  EL   M     F+    Y+  
Sbjct: 422 LEKACSYIKEMPSEAEKNV--WGTLLCASQTHG-NVQLGELAAKMLVLSDFESSGAYVML 478

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
            ++ +A    G V   R   K    E G++ +  H
Sbjct: 479 SNIYAAAGMWGEVNRVRSQMK----EKGVKKQPGH 509



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 195/406 (48%), Gaps = 37/406 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++G V+   M  AR LFD+MP+R+VVS+  M+ G       G +  AR LFD MP R+ 
Sbjct: 116 MLAGLVRLGSMEDARSLFDQMPERNVVSYTTMVDGLARC---GEVASARELFDAMPTRNL 172

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  +ISGY     +EEA +LF +MP +NVV+  AMI+G+ + GD+ NA   FD +  +
Sbjct: 173 VSWAAMISGYVDNNMLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAK 232

Query: 121 DSASLSALVSGLIQNGELDEAAR---VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           D  S +A++SG + NG  +EA +   ++++ G + D    +        +   ++GR   
Sbjct: 233 DVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTH 292

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           A  +                 + +I   N+++  Y+K G+V  +  +F  +  +D  SWN
Sbjct: 293 AVVI-------------KAMLESSISICNALMTMYSKCGNVDESELVFMSLKSQDIVSWN 339

Query: 238 TMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           T+I+ Y      ++   LF +M      P+ +T+ +M+S     G ++ +L  F  M  K
Sbjct: 340 TIIAAYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMFSK 399

Query: 294 NLVSWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
             +S  +    C  +        E A     +M  E EK   + + ++L  S    ++ L
Sbjct: 400 YAISPRAEHYACIVDILSRAGQLEKACSYIKEMPSEAEK---NVWGTLLCASQTHGNVQL 456

Query: 349 GMQIHQMVTKTVIPDVPINNALITM---YARCGAIVEARIIFEEMK 391
           G    +M+   V+ D   + A + +   YA  G   E   +  +MK
Sbjct: 457 GELAAKML---VLSDFESSGAYVMLSNIYAAAGMWGEVNRVRSQMK 499


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 211/585 (36%), Positives = 322/585 (55%), Gaps = 75/585 (12%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L++AR LFD MP+R+  TWN++IS   K+G ++EA RLF SMP  +  SWN+M+SGF Q+
Sbjct: 66  LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125

Query: 105 GDVANAIEFFDRMPGRD--------SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
                ++E+F +M   D         ++LSA  +GL+      +   ++ K     D   
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSA-CAGLMDLNMGTQVHALVSKSRYSTD--- 181

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
             V   + LI  Y + G V  A ++F  +             +RN+V+WNS+I CY + G
Sbjct: 182 --VYMGSALIDMYSKCGSVACAEEVFSGM------------IERNLVTWNSLITCYEQNG 227

Query: 217 DVVSAREIFEQMLER----------------------------------------DTFSW 236
               A E+F +M++                                         D    
Sbjct: 228 PASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLG 287

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           N ++  Y     + EA  +F +M   + ++  +MVSGYA+  +++ A   F +M Q+N+V
Sbjct: 288 NALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVV 347

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SWN++IAG   N + E A++LF  ++ E   P  +TF ++LS  + + DL LG Q H  V
Sbjct: 348 SWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHV 407

Query: 357 TKTVI-------PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            K           D+ + N+LI MY +CG+I +   +FE+MK  ++ VSWNA+I G A +
Sbjct: 408 LKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKE-RDCVSWNAIIVGYAQN 466

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G+  EAL++F+ M      P ++T I VL AC+HAGLVEEGR +F SM  E+G+ P  +H
Sbjct: 467 GYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDH 525

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           +  +VD++GR G L +A +LI+ MP  PD  VWG+LL AC+VH N+E+ + AAE L++++
Sbjct: 526 YTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEID 585

Query: 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           P NS PYVLL NMYA++GRW D   VR LM+   + K  G SW++
Sbjct: 586 PWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIE 630



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/420 (29%), Positives = 196/420 (46%), Gaps = 89/420 (21%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N LI  YG+   +++ARKLFD++P            +RN  +WNS+I    K+G +  A 
Sbjct: 54  NRLIDVYGKCDCLDDARKLFDRMP------------QRNTFTWNSLISVLTKSGFLDEAA 101

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL----------------- 265
            +F  M E D  SWN+M+SG+      EE+   FVKM   D L                 
Sbjct: 102 RLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLM 161

Query: 266 ----------------------TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                                   +A++  Y++ G++  A + F  M ++NLV+WNS+I 
Sbjct: 162 DLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLIT 221

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VI 361
             E N     A+++F++M   G +PD  T +S++S  + +  L  G+QIH  V KT    
Sbjct: 222 CYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFR 281

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKL----------------------------- 392
            D+ + NAL+ MYA+C  + EAR +F+ M +                             
Sbjct: 282 DDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKM 341

Query: 393 -LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             +NVVSWNA+I G   +G   EAL LF+ ++   + PT+ TF ++LSACA+   +  GR
Sbjct: 342 TQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGR 401

Query: 452 QHFKSMVN-----EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           Q    ++      + G E  I    SL+D+  + G +ED   + + M  E D   W A++
Sbjct: 402 QAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMK-ERDCVSWNAII 460



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 186/363 (51%), Gaps = 12/363 (3%)

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           A+   +V AR +  Q    + F  N +I  Y     +++A  LF +MP  +T TWN+++S
Sbjct: 31  ARGTRLVHARILMTQ-FSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLIS 89

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
              + G L+ A   F  MP+ +  SWNSM++G   +  +E +++ F++M  E    + ++
Sbjct: 90  VLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYS 149

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMK 391
           F S LS  +G++DL++G Q+H +V+K+    DV + +ALI MY++CG++  A  +F  M 
Sbjct: 150 FGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGM- 208

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
           + +N+V+WN++I     +G A+EALE+F  M    + P  +T  SV+SACA    ++EG 
Sbjct: 209 IERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGL 268

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
           Q    +V        +    +LVD+  +  ++ +A  +   M      +    + G  R 
Sbjct: 269 QIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARA 328

Query: 512 HNNVELAQVAAEALM--KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
                 A V A   M  K+   N   +  L   Y   G  ++A  +  L+K  +I  PT 
Sbjct: 329 ------ASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESI-WPTH 381

Query: 570 YSW 572
           Y++
Sbjct: 382 YTF 384


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 217/578 (37%), Positives = 317/578 (54%), Gaps = 67/578 (11%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G  + A  +FD + + +   W ++I GY +  + +EA  LF  M    +   N  IS  L
Sbjct: 49  GATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVL 108

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSG-----LIQNGELDEAARVLVKCGSR------ 151
           +      A+    R  G  +     L  G     ++QN  LD   R      +R      
Sbjct: 109 K------ALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEM 162

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
           C+  +D+V ++N +I GYG   RV+ ARK FD++P            +RN+VSW SMI  
Sbjct: 163 CE--KDIV-SWNMMISGYGNNDRVDIARKFFDRMP------------ERNVVSWTSMICG 207

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMV 271
           Y KAGD+  A+ +F+ M  +D  SWN M+SGY+ + D   A  +F KMP  DT +WN M+
Sbjct: 208 YVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMI 267

Query: 272 SGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE------- 324
           SG+ + G LE A DFF RMP KN++SW  M+ G   N D  GA  LF QM ++       
Sbjct: 268 SGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWST 327

Query: 325 --------GE----------------KPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTK 358
                   G+                KPD      I+S  S  GI+D    + IH  V  
Sbjct: 328 MIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESI-IHNYVGP 386

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
           +++ D+ +  +LI MYA+CG+I +A  +FE M   K+++ ++ MI   A+HG   +A+ L
Sbjct: 387 SLLSDLRVFTSLIDMYAKCGSIEKALQMFE-MAHPKDLLCYSTMIAALANHGLGRDAIFL 445

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  M+   + P  +TF+ VL+AC H GLV+EGR++FK M  E+GI+P  +H+A +VD++G
Sbjct: 446 FDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLG 505

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           R G LE+A +LI+ MP  P   VWGALL ACRVH NV+LA+VAA  L K+EP+NS  Y+L
Sbjct: 506 RVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYIL 565

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           L N+YA  GRW    +VR  ++ + ++K  G SW++ S
Sbjct: 566 LSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWIELS 603



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/467 (30%), Positives = 240/467 (51%), Gaps = 41/467 (8%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           +++ R++  AR+ FDEM ++D+VSWN+MISGY     +  ++ AR  FD MPER+ V+W 
Sbjct: 146 FMRCRKVDTARQAFDEMCEKDIVSWNMMISGY---GNNDRVDIARKFFDRMPERNVVSWT 202

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
           ++I GY K G+M EA  LF+SMP +++ SWN M+SG++  GD  NA   F +MP  D+ S
Sbjct: 203 SMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGS 262

Query: 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK 184
            + ++SG  + GEL+ A     +  ++       V ++  ++ GY + G    AR LFD+
Sbjct: 263 WNIMISGFCKAGELESAKDFFDRMPNKN------VISWGIMLDGYIKNGDTNGARCLFDQ 316

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI 244
           +P+            +N+V+W++MI  YA+ G  + A E+FE+  E+D     T I G I
Sbjct: 317 MPM------------KNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGII 364

Query: 245 HVLD----MEEASNLFVKMPHPDTLT----WNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
                   ++ A ++      P  L+    + +++  YA+ G++E AL  F+    K+L+
Sbjct: 365 SACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLL 424

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQ 354
            +++MIA    +     AI LF +MQ    KPD  TF  +L+  +  G+VD   G +  +
Sbjct: 425 CYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVD--EGRKYFK 482

Query: 355 MVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
            +T+   + P       ++ +  R G + EA  +   M +  + V W A++  C  H   
Sbjct: 483 QMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVH--C 540

Query: 413 TEALELFKSMRSFKVLP----TYITFISVLSACAHAGLVEEGRQHFK 455
              L    +   FK+ P     YI   ++ +A    G V + R   +
Sbjct: 541 NVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIR 587



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 155/301 (51%), Gaps = 25/301 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI GYVK  +MA+A+ LFD MP +D+ SWNVM+SGY+     G    AR +F  MP  D 
Sbjct: 204 MICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMD---IGDCVNARIIFGKMPIHDT 260

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN +ISG+ K GE+E A   F+ MP +NV+SW  M+ G+++NGD   A   FD+MP +
Sbjct: 261 GSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMK 320

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY----GQRGRVE 176
           +  + S ++ G  +NG+  +A  +  +        E  ++   T I+G      Q G ++
Sbjct: 321 NLVTWSTMIGGYARNGQPLKALELFERF------KEQDIKPDETFILGIISACSQLGIID 374

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            A  +                   ++  + S+I  YAK G +  A ++FE    +D   +
Sbjct: 375 AAESIIHNYV--------GPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCY 426

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           +TMI+   +     +A  LF KM      PD++T+  +++     G ++    +FK+M +
Sbjct: 427 STMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTE 486

Query: 293 K 293
           +
Sbjct: 487 E 487



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 172/422 (40%), Gaps = 96/422 (22%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N L+  Y + G  + A K+FD+I             + N   W S+I  Y +      A 
Sbjct: 39  NKLLRLYSRFGATDYAHKVFDEIT------------QPNAYLWTSLIHGYVENRQYDEAF 86

Query: 223 EIFEQM------------------LERDT-FSWNTMISGYI-------------HVLDM- 249
            +F QM                  L R T F     + G++              VLD+ 
Sbjct: 87  SLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLF 146

Query: 250 ------EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                 + A   F +M   D ++WN M+SGY     +++A  FF RMP++N+VSW SMI 
Sbjct: 147 MRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMIC 206

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363
           G     D   A  LF  M V+         +S   M SG +D+   +    +  K  I D
Sbjct: 207 GYVKAGDMAEAQVLFDSMPVK-------DLASWNVMVSGYMDIGDCVNARIIFGKMPIHD 259

Query: 364 VPINNALITMYARCGAIVEARIIFEEMK------------------------------LL 393
               N +I+ + + G +  A+  F+ M                                +
Sbjct: 260 TGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPM 319

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           KN+V+W+ MIGG A +G   +ALELF+  +   + P     + ++SAC+  G+++     
Sbjct: 320 KNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAA--- 376

Query: 454 FKSMVNEY---GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
            +S+++ Y    +   +  F SL+D+  + G +E A+ + + M    D   +  ++ A  
Sbjct: 377 -ESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFE-MAHPKDLLCYSTMIAALA 434

Query: 511 VH 512
            H
Sbjct: 435 NH 436


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 227/710 (31%), Positives = 370/710 (52%), Gaps = 137/710 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-----FLEEARY--LFD 53
           M+ GY  R ++  A+KLFD MP+RDVVSWN +ISGY+ +         FL+  R   +FD
Sbjct: 114 MLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFD 173

Query: 54  IMP-----------------------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                                           + D VT + ++  YAK  +++ +++ F+
Sbjct: 174 RTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFH 233

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG--------------RDSASLSALVS 130
           SMP +N VSW+A+I+G +QN D+   +E F  M                R  A LSAL  
Sbjct: 234 SMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRL 293

Query: 131 GLIQNG---ELDEAARVLV---------KCGSRCDGGEDL-------VRAYNTLIVGYGQ 171
           G   +G   + D    V++         KC +  D  +         +++YN +IVGY +
Sbjct: 294 GSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYAR 353

Query: 172 RGRVEEARKLF----------DKIPVN-----CDRGEGNVR------------FKRNIVS 204
             +  EA  +F          D++ ++     C   +G++              + NI  
Sbjct: 354 SDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICV 413

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH--- 261
            N+++  Y K G +V A  +FE+M+ RD  SWN +I+ +    + E+  +LFV M     
Sbjct: 414 ANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGM 473

Query: 262 -PDTLT----------WNAMVSG-------------------------YAQIGNLELALD 285
            PD  T          W A+  G                         Y++ G +E A  
Sbjct: 474 EPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEK 533

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
              R+ ++ +VSWN++I+G    K  E A K F +M   G  PD  T+++IL   + +V 
Sbjct: 534 LHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVT 593

Query: 346 LHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           + LG QIH Q++ K +  D  I++ L+ MY++CG + + ++IFE+    ++ V+WNAM+ 
Sbjct: 594 VELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPN-RDFVTWNAMVC 652

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           G A HG   EAL++F+ M+   V P + TF++VL AC H GLVE+G  +F SM++ YG++
Sbjct: 653 GYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLD 712

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           P++EH++ +VDI+GR G++  A++LI+GMPFE D  +W  LL  C++H NVE+A+ AA +
Sbjct: 713 PQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYS 772

Query: 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           ++++EPE+S  YVLL N+YA+ G W++  ++R +M+ N +KK  G SW++
Sbjct: 773 ILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIE 822



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 154/550 (28%), Positives = 263/550 (47%), Gaps = 46/550 (8%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           + A AR +  E      V+ N +I  YI       LE A  +FD MP+RD V+WN ++ G
Sbjct: 62  KQAHARMILTEFKPTVFVT-NCLIQMYIKCSD---LEFAFKVFDGMPQRDTVSWNAMLFG 117

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSAS 124
           YA  G++  A +LF++MP R+VVSWN++ISG+L NGD    I+ F +M GR     D  +
Sbjct: 118 YAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQM-GRMGTVFDRTT 176

Query: 125 LSALV---SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
            + ++   S L  +G   +   + VK G  CD     V   + L+  Y +  +++ + + 
Sbjct: 177 FAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCD-----VVTGSALLDMYAKCKKLDCSIQF 231

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM------LERDTFS 235
           F  +P            ++N VSW+++I    +  D+    E+F++M      + + TF+
Sbjct: 232 FHSMP------------EKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFA 279

Query: 236 WNTMISGYIHVLDM-EEASNLFVKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
                   +  L +  +     +K     D +   A +  Y +  NL  A   F  +P  
Sbjct: 280 SVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNH 339

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           NL S+N++I G   +     A+ +F  +Q  G   D  + S      + I     G+Q+H
Sbjct: 340 NLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVH 399

Query: 354 QMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
            +  K++   ++ + NA++ MY +CGA+VEA ++FEEM + ++ VSWNA+I     +G  
Sbjct: 400 GLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEM-VSRDAVSWNAIIAAHEQNGNE 458

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFA 471
            + L LF  M    + P   T+ SVL ACA    +  G + H + + +  G++  +    
Sbjct: 459 EKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVG--I 516

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL--MKVE 529
           +L+D+  + G +E A  L   +  E     W A++    +    E AQ     +  M V+
Sbjct: 517 ALIDMYSKCGMMEKAEKLHDRLA-EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVD 575

Query: 530 PENSTPYVLL 539
           P+N T   +L
Sbjct: 576 PDNFTYATIL 585


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 229/719 (31%), Positives = 361/719 (50%), Gaps = 153/719 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           +ISGY    EM  ARK F EMP+RDVVSWN +ISG++ +                     
Sbjct: 121 IISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFD 180

Query: 40  --------RGSGFLEEA-----------RYLFDIMPERDCVTWNTVISGYAKTGEMEEAL 80
                   +  G LEE            ++ FD     D VT + ++  YAK   ++++L
Sbjct: 181 RASLAVVLKACGALEECDMGVQVHGLVVKFGFDC----DVVTGSALLGMYAKCKRLDDSL 236

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG--------------RDSASLS 126
            +F+ +P +N VSW+AMI+G +QN      +E F  M G              R  A+LS
Sbjct: 237 SVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALS 296

Query: 127 ALVSG----------------LIQNGELDEAARVLVKCGSRCDGGEDL-------VRAYN 163
           AL  G                ++    LD  A    KCG   D  + L       +++YN
Sbjct: 297 ALRLGKELHSHALKSAFGSDIIVGTATLDMYA----KCGRMADAQKVLSSMPKCSLQSYN 352

Query: 164 TLIVGYGQRGRVEEARKLF----------DKIPVN-----CDRGEGNVRFKR-------- 200
            +IVGY +  R  +A K F          D+I ++     C    G++  ++        
Sbjct: 353 AIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKS 412

Query: 201 ----NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF 256
               NI   N+++  Y K   +  A ++F+ M  RD  SWN +I+      + EE    F
Sbjct: 413 ISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHF 472

Query: 257 VKMPH----PDTLTWN-----------------------------------AMVSGYAQI 277
             M H    PD  T+                                    A+V  Y + 
Sbjct: 473 ASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKC 532

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
           G +E A     R  QK +VSWN++I+G    +  E A K F +M   G  PD  T++++L
Sbjct: 533 GMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVL 592

Query: 338 SMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
              + +  + LG QIH Q++ + +  DV I + L+ MY++CG + +++++FE+    ++ 
Sbjct: 593 DTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPN-RDF 651

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
           V+WNAM+ G A HG   EAL+LF+SM+   V P + TF+SVL ACAH GLV++G  +F  
Sbjct: 652 VTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDV 711

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE 516
           M++EYG++P+ EH++ +VDI+GR GR+++A++L++ MPFE D  +W  LL  C++H NVE
Sbjct: 712 MLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVE 771

Query: 517 LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           +A+ A  AL++++P++S+  VLL N+YAD G W + +E+R +M+ N +KK  G SW++ 
Sbjct: 772 VAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIEL 830



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 160/551 (29%), Positives = 259/551 (47%), Gaps = 48/551 (8%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           + A AR +F        VS N ++  YI      +L+ A  +FD M  RD V++N++ISG
Sbjct: 69  KQAHARMIFCGFEPTTFVS-NCLMQMYIKCL---YLDYACKVFDKMYLRDVVSYNSIISG 124

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASL 125
           YA  GEM+ A + F  MP R+VVSWN++ISGFLQNG+   +I+ F  M     G D ASL
Sbjct: 125 YASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASL 184

Query: 126 SALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
           + ++       E D   +V   +VK G  CD     V   + L+  Y +  R++++  +F
Sbjct: 185 AVVLKACGALEECDMGVQVHGLVVKFGFDCD-----VVTGSALLGMYAKCKRLDDSLSVF 239

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----------LERD 232
            ++P            ++N VSW++MI    +    V   E+F++M          +   
Sbjct: 240 SELP------------EKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYAS 287

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
            F     +S     L  E  S+        D +   A +  YA+ G +  A      MP+
Sbjct: 288 LFRSCAALSAL--RLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPK 345

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
            +L S+N++I G   +     A+K F  +   G   D  T S  L+  + I     G Q+
Sbjct: 346 CSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQV 405

Query: 353 HQMVTKTV-IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H +  K++ + ++ + NA++ MY +C A+ EA  +F+ M+  ++ VSWNA+I  C  +G 
Sbjct: 406 HGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMME-RRDAVSWNAIIAACEQNGN 464

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHF 470
             E L  F SM   ++ P   T+ SVL ACA    +  G + H + + +  G +  +   
Sbjct: 465 EEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVG-- 522

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL--MKV 528
           A+LVD+  + G +E A D I     +     W A++    +    E A      +  M V
Sbjct: 523 AALVDMYCKCGMIEKA-DKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGV 581

Query: 529 EPENSTPYVLL 539
            P+N T   +L
Sbjct: 582 NPDNFTYAAVL 592



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 154/281 (54%), Gaps = 6/281 (2%)

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
           G    AR IF    E  TF  N ++  YI  L ++ A  +F KM   D +++N+++SGYA
Sbjct: 68  GKQAHARMIFCG-FEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISGYA 126

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
             G +++A  FF  MP++++VSWNS+I+G   N +   +I +F++M   G   DR + + 
Sbjct: 127 SCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAV 186

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +L     + +  +G+Q+H +V K     DV   +AL+ MYA+C  + ++  +F E+   K
Sbjct: 187 VLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELP-EK 245

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-H 453
           N VSW+AMI GC  +    E LELFK M+   V  +   + S+  +CA    +  G++ H
Sbjct: 246 NWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELH 305

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
             ++ + +G +  +    + +D+  + GR+ DA  ++  MP
Sbjct: 306 SHALKSAFGSDIIVG--TATLDMYAKCGRMADAQKVLSSMP 344


>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 579

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/518 (36%), Positives = 302/518 (58%), Gaps = 21/518 (4%)

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           RD    N  I   ++ G+++ A +LF+ M  ++VV+WN+M+S + QNG +  +   F  M
Sbjct: 27  RDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSM 86

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P R+  S +++++  +QN  L +A R L          E    +YN +I G  + GR+++
Sbjct: 87  PLRNVVSWNSIIAACVQNDNLQDAFRYLAA------APEKNAASYNAIISGLARCGRMKD 140

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA-GDVVSAREIFEQMLERDTFSW 236
           A++LF+ +P              N+VS+ +M+  YA+  G +  AR +FE M  R++ SW
Sbjct: 141 AQRLFEAMPCP------------NVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSW 188

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
             MI+G +     EEA  +FV+MP  + +   AM++G+ + G +E A D F+ +  ++LV
Sbjct: 189 VVMINGLVENGLCEEAWEVFVRMPQKNDVARTAMITGFCKEGRMEDARDLFQEIRCRDLV 248

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SWN ++ G   N   E A+ LF QM   G +PD  TF S+    + +  L  G + H ++
Sbjct: 249 SWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALL 308

Query: 357 TKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            K     D+ + NALIT++++CG IV++ ++F ++    ++VSWN +I   A HG   +A
Sbjct: 309 IKHGFDSDLSVCNALITVHSKCGGIVDSELVFGQISH-PDLVSWNTIIAAFAQHGLYDKA 367

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
              F  M +  V P  ITF+S+LSAC  AG V E    F  MV+ YGI PR EH+A LVD
Sbjct: 368 RSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVD 427

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++ R G+L+ A  +I  MPF+ D ++WGA+L AC VH NVEL ++AA  ++ ++P NS  
Sbjct: 428 VMSRAGQLQRACKIINEMPFKADSSIWGAVLAACSVHLNVELGELAARRILNLDPFNSGA 487

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           YV+L N+YA  G+W D + +R+LMK   +KK T YSW+
Sbjct: 488 YVMLSNIYAAAGKWKDVHRIRVLMKEQGVKKQTAYSWL 525



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/438 (30%), Positives = 214/438 (48%), Gaps = 63/438 (14%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNT-------- 65
           ARKLFDEM  +DVV+WN M+S Y     +G L+ ++ LF  MP R+ V+WN+        
Sbjct: 48  ARKLFDEMATKDVVTWNSMLSAYWQ---NGLLQRSKALFHSMPLRNVVSWNSIIAACVQN 104

Query: 66  -----------------------VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
                                  +ISG A+ G M++A RLF +MP  NVVS+ AM+ G+ 
Sbjct: 105 DNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFEAMPCPNVVSYTAMVDGYA 164

Query: 103 Q-NGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
           +  G +  A   F+ MP R+S S   +++GL++NG  +EA  V V+   + D       A
Sbjct: 165 RVEGGIGRARALFEAMPRRNSVSWVVMINGLVENGLCEEAWEVFVRMPQKND------VA 218

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
              +I G+ + GR+E+AR LF +I   C          R++VSWN ++  YA+ G    A
Sbjct: 219 RTAMITGFCKEGRMEDARDLFQEI--RC----------RDLVSWNIIMTGYAQNGRGEEA 266

Query: 222 REIFEQM----LERDTFSWNTMISGYIHVLDMEEASN---LFVKMPHPDTLT-WNAMVSG 273
             +F QM    ++ D  ++ ++      +  +EE S    L +K      L+  NA+++ 
Sbjct: 267 LNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSVCNALITV 326

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           +++ G +  +   F ++   +LVSWN++IA    +  Y+ A   F QM     +PD  TF
Sbjct: 327 HSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITF 386

Query: 334 SSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNA-LITMYARCGAIVEARIIFEEMK 391
            S+LS       ++  M +   MV    IP    + A L+ + +R G +  A  I  EM 
Sbjct: 387 LSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACKIINEMP 446

Query: 392 LLKNVVSWNAMIGGCASH 409
              +   W A++  C+ H
Sbjct: 447 FKADSSIWGAVLAACSVH 464



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 207/436 (47%), Gaps = 49/436 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +ISG  +   M  A++LF+ MP  +VVS+  M+ GY  +R  G +  AR LF+ MP R+ 
Sbjct: 128 IISGLARCGRMKDAQRLFEAMPCPNVVSYTAMVDGY--ARVEGGIGRARALFEAMPRRNS 185

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  +I+G  + G  EEA  +F  MP +N V+  AMI+GF + G + +A + F  +  R
Sbjct: 186 VSWVVMINGLVENGLCEEAWEVFVRMPQKNDVARTAMITGFCKEGRMEDARDLFQEIRCR 245

Query: 121 DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           D  S + +++G  QNG  +EA  +   +++ G + D   DL   + ++ +       +EE
Sbjct: 246 DLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPD---DLT--FVSVFIACASLASLEE 300

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
             K    +  +         F  ++   N++I  ++K G +V +  +F Q+   D  SWN
Sbjct: 301 GSKAHALLIKH--------GFDSDLSVCNALITVHSKCGGIVDSELVFGQISHPDLVSWN 352

Query: 238 TMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           T+I+ +      ++A + F +M      PD +T+ +++S   + G +  +++ F  M   
Sbjct: 353 TIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESMNLFSLMVDN 412

Query: 294 NLVSWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
             +   S    C  +        + A K+  +M     K D   + ++L+  S    +HL
Sbjct: 413 YGIPPRSEHYACLVDVMSRAGQLQRACKIINEMPF---KADSSIWGAVLAACS----VHL 465

Query: 349 GMQIHQMVTKTVIPDVPINNA----LITMYARCGA---IVEARIIFEEMKLLKNVV-SW- 399
            +++ ++  + ++   P N+     L  +YA  G    +   R++ +E  + K    SW 
Sbjct: 466 NVELGELAARRILNLDPFNSGAYVMLSNIYAAAGKWKDVHRIRVLMKEQGVKKQTAYSWL 525

Query: 400 ------NAMIGGCASH 409
                 +  +GG  SH
Sbjct: 526 QIGNKTHYFVGGDPSH 541


>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
          Length = 567

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 191/516 (37%), Positives = 304/516 (58%), Gaps = 23/516 (4%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG--DVANAIEFFDR-MPGR 120
           N  IS  A+ G++  A R+F++M  R+VVSWNA+++   + G   +  A   FD  MP R
Sbjct: 19  NQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSR 78

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  S +++++G + +G+LD A+        R       V  +N ++ G  + GRV +A++
Sbjct: 79  DVVSWNSIIAGCLAHGDLDAASAYFAGAPERN------VATWNAMLAGLVRLGRVVDAQR 132

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD++P            +RN+VS+ +M+   A+ G+V  ARE+F+ M +R+  SW  MI
Sbjct: 133 LFDEMP------------ERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMI 180

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           SG +      EA  LF  MP  + +   AM++G+ + G+++ A   F  +  K+++SWN+
Sbjct: 181 SGCVENGMFVEARELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNA 240

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           MIAG   N   E A++L   M  EG KPD  T  ++L+  S +  L  G   H +  K +
Sbjct: 241 MIAGYVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAM 300

Query: 361 IPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
           +   +  +NAL+TMY++CG + E+ ++F  ++  K++VSWN +I   A HG   + + LF
Sbjct: 301 LESGISFSNALMTMYSKCGNVGESELVFINLRT-KDIVSWNTIIAAYAQHGKYQKVIALF 359

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M    ++P  ITF+SVLSAC H G+V+   + F  M ++Y I PR EH+A +VDI+ R
Sbjct: 360 HEMEVTGLIPDDITFLSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSR 419

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G+LE A   IK MP + +K VWG+LLGAC++H NV+L ++AA+ L++ + ++S PYV+L
Sbjct: 420 AGQLEKASSYIKHMPLKAEKNVWGSLLGACQIHGNVQLGELAAKMLVQSDSQSSGPYVIL 479

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
            N+YA  G W   N++R  MK   +KK  GYSW + 
Sbjct: 480 SNIYAAAGMWGQVNQIRGQMKERGVKKQPGYSWTEI 515



 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 144/452 (31%), Positives = 222/452 (49%), Gaps = 63/452 (13%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD-IMPERDC 60
           IS   +  ++A AR++FD M  RDVVSWN +++    + G   L  AR LFD  MP RD 
Sbjct: 22  ISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRA-GRHHLPAARRLFDEAMPSRDV 80

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN++I+G    G+++ A   F   P RNV +WNAM++G ++ G V +A   FD MP R
Sbjct: 81  VSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVVDAQRLFDEMPER 140

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S + +V  L + GE++ A  V      R     +LV ++  +I G  + G   EAR+
Sbjct: 141 NVVSYTTMVDWLARRGEVERAREVFDSMPDR-----NLV-SWAAMISGCVENGMFVEARE 194

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF+ +P            ++N+V+  +MI  + K GDV SAR +F+ +  +D  SWN MI
Sbjct: 195 LFEAMP------------EKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMI 242

Query: 241 SGYIHVLDMEEASNLFVKM----PHPDTLTW----------------------------- 267
           +GY+H    EEA  L   M      PD  T                              
Sbjct: 243 AGYVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLE 302

Query: 268 ------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
                 NA+++ Y++ GN+  +   F  +  K++VSWN++IA    +  Y+  I LF +M
Sbjct: 303 SGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEM 362

Query: 322 QVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCG 378
           +V G  PD  TF S+LS     G+VD  L +    M +K  I P       ++ + +R G
Sbjct: 363 EVTGLIPDDITFLSVLSACGHVGMVDASLKL-FDLMSSKYAISPRAEHYACIVDILSRAG 421

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            + +A    + M L      W +++G C  HG
Sbjct: 422 QLEKASSYIKHMPLKAEKNVWGSLLGACQIHG 453



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 138/286 (48%), Gaps = 42/286 (14%)

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIF---------------------------------- 225
           R ++  N  I   A+AGDV +AR +F                                  
Sbjct: 13  RRLLRDNQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLFD 72

Query: 226 EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
           E M  RD  SWN++I+G +   D++ AS  F   P  +  TWNAM++G  ++G +  A  
Sbjct: 73  EAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVVDAQR 132

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F  MP++N+VS+ +M+       + E A ++F  M      PDR+   S  +M SG V+
Sbjct: 133 LFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSM------PDRN-LVSWAAMISGCVE 185

Query: 346 LHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             + ++  ++       +V    A+IT + + G +  AR +F+ ++  K+V+SWNAMI G
Sbjct: 186 NGMFVEARELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIR-AKDVISWNAMIAG 244

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
              +G   EA+ L   M    V P + T I+VL+AC+   L+ +G+
Sbjct: 245 YVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGK 290



 Score = 45.8 bits (107), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 20/169 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +++ Y K   + ++  +F  +  +D+VSWN +I+ Y      G  ++   LF  M     
Sbjct: 311 LMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQ---HGKYQKVIALFHEMEVTGL 367

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
             D +T+ +V+S     G ++ +L+LF+ M ++  +S     +  ++    + G +  A 
Sbjct: 368 IPDDITFLSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKAS 427

Query: 112 EFFDRMPGRDSASL------SALVSGLIQNGELDEAARVLVKCGSRCDG 154
            +   MP +   ++      +  + G +Q GEL  AA++LV+  S+  G
Sbjct: 428 SYIKHMPLKAEKNVWGSLLGACQIHGNVQLGEL--AAKMLVQSDSQSSG 474


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/518 (37%), Positives = 296/518 (57%), Gaps = 52/518 (10%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQ-NGDVANAIEFFDRM 117
           D V+ N  I+ + +  ++E A  +F  M  R  V+WN M+SG+ +  G V  A E FD++
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P  DS S                                     YN ++V Y +   V+ 
Sbjct: 132 PEPDSVS-------------------------------------YNIMLVCYLRSYGVKA 154

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           A   F+K+PV            ++I SWN++I  +A+ G +  A ++F  M E++  SW+
Sbjct: 155 ALAFFNKMPV------------KDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWS 202

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
            MISGY+   D+E A  L+  +     +   AM++GY + G +ELA   F+RM  KNLV+
Sbjct: 203 AMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVT 262

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WNSMIAG   N   E  +K+F  M     +P+  + SS+L   S +  L LG Q+HQ+V+
Sbjct: 263 WNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVS 322

Query: 358 KTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           K+ +  D     +LI+MY +CG +  A  +F EM   K+V++WNAMI G A HG   +AL
Sbjct: 323 KSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPR-KDVITWNAMISGYAQHGAGRKAL 381

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
            LF  MR+  + P +ITF++V+ AC HAG V+ G Q+FKSM  E+GIE +  H+  ++D+
Sbjct: 382 HLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDL 441

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           +GR GRL++A+ LIK MPF P  A++G LLGACR+H N++LA+ AA  L+ ++P ++T Y
Sbjct: 442 LGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGY 501

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           V L N+YA   +WD   +VR +MK +N+ K  GYSW++
Sbjct: 502 VQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIE 539



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 130/451 (28%), Positives = 215/451 (47%), Gaps = 96/451 (21%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           I+ +V+  ++  AR +F++M  R  V+WN M+SGY  ++ +G ++EA  LFD +PE D V
Sbjct: 80  IASFVRACDLESARNVFEKMSVRTTVTWNTMLSGY--TKVAGKVKEAHELFDKIPEPDSV 137

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           ++N ++  Y ++  ++ AL  FN MP +++ SWN +ISGF QNG +  A + F  MP ++
Sbjct: 138 SYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKN 197

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S SA++SG +++G+L EAA  L K     + G   V     ++ GY + G+VE A ++
Sbjct: 198 GVSWSAMISGYVEHGDL-EAAEELYK-----NVGMKSVVVETAMLTGYMKFGKVELAERI 251

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----------- 230
           F ++ V            +N+V+WNSMI  Y +        ++F+ M+E           
Sbjct: 252 FQRMAV------------KNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLS 299

Query: 231 ----------------------------RDTFSWNTMISGYIHVLDMEEASNLFVKMPHP 262
                                       +DT +  ++IS Y    D++ A  LF++MP  
Sbjct: 300 SVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRK 359

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D +TWNAM+SGYAQ G    AL  F +M    +                           
Sbjct: 360 DVITWNAMISGYAQHGAGRKALHLFDKMRNGTM--------------------------- 392

Query: 323 VEGEKPDRHTFSSIL--SMSSGIVDLHLGMQIHQMVTKTV-IPDVPIN-NALITMYARCG 378
               KPD  TF +++     +G VD  LG+Q  + + K   I   P++   +I +  R G
Sbjct: 393 ----KPDWITFVAVILACNHAGFVD--LGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAG 446

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            + EA  + +EM    +   +  ++G C  H
Sbjct: 447 RLDEAVSLIKEMPFTPHAAIYGTLLGACRIH 477



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 163/304 (53%), Gaps = 31/304 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  Y++   +  A   F++MP +D+ SWN +ISG+     +G +++A  LF +MPE++ 
Sbjct: 142 MLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQ---NGQMQKAFDLFSVMPEKNG 198

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W+ +ISGY + G++E A  L+ ++  ++VV   AM++G+++ G V  A   F RM  +
Sbjct: 199 VSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVK 258

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR----AYNTLIVGYGQRGRVE 176
           +  + +++++G ++N   ++  +V           E  VR    + +++++G      + 
Sbjct: 259 NLVTWNSMIAGYVENCRAEDGLKVFKTM------IESRVRPNPLSLSSVLLGCSNLSALP 312

Query: 177 EAR---KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
             R   +L  K P++           ++  +  S+I  Y K GD+ SA ++F +M  +D 
Sbjct: 313 LGRQMHQLVSKSPLS-----------KDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDV 361

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKR 289
            +WN MISGY       +A +LF KM +    PD +T+ A++      G ++L + +FK 
Sbjct: 362 ITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKS 421

Query: 290 MPQK 293
           M ++
Sbjct: 422 MKKE 425



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 161/328 (49%), Gaps = 31/328 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +ISG+ +  +M KA  LF  MP+++ VSW+ MISGY+     G LE A  L+  +  +  
Sbjct: 173 LISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVE---HGDLEAAEELYKNVGMKSV 229

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V    +++GY K G++E A R+F  M  +N+V+WN+MI+G+++N    + ++ F  M   
Sbjct: 230 VVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIES 289

Query: 121 ----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               +  SLS+++ G   N       R + +  S+    +D   A  +LI  Y + G ++
Sbjct: 290 RVRPNPLSLSSVLLG-CSNLSALPLGRQMHQLVSKSPLSKD-TTACTSLISMYCKCGDLD 347

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERD 232
            A KLF ++P            ++++++WN+MI  YA+ G    A  +F++M    ++ D
Sbjct: 348 SAWKLFLEMP------------RKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPD 395

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFF 287
             ++  +I    H   ++     F  M          + +  ++    + G L+ A+   
Sbjct: 396 WITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLI 455

Query: 288 KRMP-QKNLVSWNSMIAGCETNKDYEGA 314
           K MP   +   + +++  C  +K+ + A
Sbjct: 456 KEMPFTPHAAIYGTLLGACRIHKNLDLA 483



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 27/197 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +IS Y K  ++  A KLF EMP++DV++WN MISGY +  G+G   +A +LFD M     
Sbjct: 336 LISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGY-AQHGAG--RKALHLFDKMRNGTM 392

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
           + D +T+  VI      G ++  ++ F SM          V +  +I    + G +  A+
Sbjct: 393 KPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAV 452

Query: 112 EFFDRMPGRDSASLSALVSG---LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
                MP    A++   + G   + +N +L E A              +L+    T   G
Sbjct: 453 SLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFA------------ARNLLNLDPTSATG 500

Query: 169 YGQRGRVEEARKLFDKI 185
           Y Q   +  A   +D++
Sbjct: 501 YVQLANIYAATNKWDQV 517


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 185/515 (35%), Positives = 294/515 (57%), Gaps = 52/515 (10%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN-GDVANAIEFFDRMPGRDS 122
           N +I+ Y + G+++ A+R+F  M  ++ V+WN++++ F +  G    A + F+++P  ++
Sbjct: 45  NKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKIPQPNT 104

Query: 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
            S                                     YN ++  +     V +AR  F
Sbjct: 105 VS-------------------------------------YNIMLACHWHHLGVHDARGFF 127

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
           D +P+            +++ SWN+MI   A+ G +  AR +F  M E++  SW+ M+SG
Sbjct: 128 DSMPL------------KDVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSG 175

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
           Y+   D++ A   F   P    +TW AM++GY + G +ELA   F+ M  + LV+WN+MI
Sbjct: 176 YVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMI 235

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP 362
           AG   N   E  ++LF  M   G KP+  + +S+L   S +  L LG Q+HQ+V K  + 
Sbjct: 236 AGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLS 295

Query: 363 -DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
            D     +L++MY++CG + +A  +F ++   K+VV WNAMI G A HG   +AL LF  
Sbjct: 296 SDTTAGTSLVSMYSKCGDLKDAWELFIQIPR-KDVVCWNAMISGYAQHGAGKKALRLFDE 354

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M+   + P +ITF++VL AC HAGLV+ G Q+F +M  ++GIE + EH+A +VD++GR G
Sbjct: 355 MKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAG 414

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
           +L +A+DLIK MPF+P  A++G LLGACR+H N+ LA+ AA+ L++++P  +T YV L N
Sbjct: 415 KLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLAN 474

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           +YA   RWD    +R  MK NN+ K  GYSW++ +
Sbjct: 475 VYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEIN 509



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/485 (27%), Positives = 239/485 (49%), Gaps = 55/485 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+ YV+  ++  A ++F++M  +  V+WN +++ +  ++  G  E AR LF+ +P+ + 
Sbjct: 47  LIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAF--AKKPGHFEYARQLFEKIPQPNT 104

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V++N +++ +     + +A   F+SMP ++V SWN MIS   Q G +  A   F  MP +
Sbjct: 105 VSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEK 164

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S SA+VSG +  G+LD A         R       V  +  +I GY + GRVE A +
Sbjct: 165 NCVSWSAMVSGYVACGDLDAAVECFYAAPMRS------VITWTAMITGYMKFGRVELAER 218

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSW 236
           LF ++ +            R +V+WN+MI  Y + G       +F  MLE     +  S 
Sbjct: 219 LFQEMSM------------RTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSL 266

Query: 237 NTMISGYIHVLDME---EASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
            +++ G  ++  ++   +   L  K P   DT    ++VS Y++ G+L+ A + F ++P+
Sbjct: 267 TSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPR 326

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL--SMSSGIVDLHLGM 350
           K++V WN+MI+G   +   + A++LF +M+ EG KPD  TF ++L     +G+VD  LG+
Sbjct: 327 KDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVD--LGV 384

Query: 351 QIHQMVTKTV-IPDVPINNA-LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           Q    + +   I   P + A ++ +  R G + EA  + + M    +   +  ++G C  
Sbjct: 385 QYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRI 444

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           H      L  F +    ++ PT  T           G V+        + N Y  + R +
Sbjct: 445 H--KNLNLAEFAAKNLLELDPTIAT-----------GYVQ--------LANVYAAQNRWD 483

Query: 469 HFASL 473
           H AS+
Sbjct: 484 HVASI 488


>gi|302753930|ref|XP_002960389.1| hypothetical protein SELMODRAFT_73601 [Selaginella moellendorffii]
 gi|300171328|gb|EFJ37928.1| hypothetical protein SELMODRAFT_73601 [Selaginella moellendorffii]
          Length = 577

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 195/553 (35%), Positives = 317/553 (57%), Gaps = 28/553 (5%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  +VK  ++  AR++FD +P+  VV+   ++   ++ RG    E AR +F  MPERD 
Sbjct: 33  LIGAFVKIGDLEHARRVFDLLPRWTVVTSTAILVA-LAKRGKA--ENARAMFLAMPERDL 89

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V WN +I+ YA+ G ++ A  +F  MPARN VSWNA+I G  Q  D A A + FD MP R
Sbjct: 90  VAWNAMITAYAQNGNLQVAQAMFFRMPARNFVSWNAIIDGCAQGQDEALAKKVFDSMPQR 149

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A+V+   Q+G L+EA  +L K  +        + ++N +I  +     VEEA++
Sbjct: 150 EVVSWTAMVATYSQSGRLEEAQALLSKMPALN------IVSWNVMIQAFADNLLVEEAKE 203

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            FD+ P            + + VSWN++I  YA+   +  AR  F++M +RD  SW TMI
Sbjct: 204 RFDRAP------------EHDFVSWNAIITAYAQTSQIFLARAAFDRMPQRDVVSWATMI 251

Query: 241 SGYIH--VLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP---QKNL 295
             Y       M++A  +F + P  + ++WN M++GY+  G ++ +   F+RMP   + +L
Sbjct: 252 QSYAQEGQPSMDQAKEIFDRAPQRNVVSWNVMITGYSASGRIKQSRGLFERMPMMAEHDL 311

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           VSWN++IAG   N   E A++LF++M   G  PD  +++S L+  +G+  L     IH  
Sbjct: 312 VSWNALIAGHLDNGLDERALQLFLEMDRRGCSPDPASYTSALAACAGLASLGAARDIHWR 371

Query: 356 VTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           + K  +  D  ++NAL+  Y + G + +A ++F+ +  + +VV+WNA+  G +  G    
Sbjct: 372 LCKAGLETDAFVHNALVDFYGKSGRMADAELVFQSLASV-DVVTWNALAAGLSRQGSYRL 430

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
            ++L  +++   + P  ITF+++L+A  HAGLV+ GR+ F +MV  Y IEP IEH+  LV
Sbjct: 431 VVDLLWAIKDQGLEPDGITFLALLAAYGHAGLVDHGRRAFAAMVETYRIEPGIEHYHCLV 490

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D++GR  RLE+A+ ++  MP  P    W  +L AC    N+ +A VA E+L+ ++P+   
Sbjct: 491 DMLGRANRLEEAVAVVSAMPHRPSSVTWTTVLSACVKWKNLGVASVAFESLLGIDPDGPA 550

Query: 535 PYVLLYNMYADVG 547
            YVL+ N+Y   G
Sbjct: 551 AYVLMANVYGSAG 563



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 202/444 (45%), Gaps = 61/444 (13%)

Query: 97  MISGFLQNGDVANAIEFFDRMP-GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGG 155
           M++ +  NG   +A   FDR+P GRDS + S L+   ++ G+L+ A RV           
Sbjct: 1   MLTVYAHNGRPWDAKNLFDRIPGGRDSVAWSCLIGAFVKIGDLEHARRVF---------- 50

Query: 156 EDLVRAY-----NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
            DL+  +       ++V   +RG+ E AR +F  +P            +R++V+WN+MI 
Sbjct: 51  -DLLPRWTVVTSTAILVALAKRGKAENARAMFLAMP------------ERDLVAWNAMIT 97

Query: 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAM 270
            YA+ G++  A+ +F +M  R+  SWN +I G     D   A  +F  MP  + ++W AM
Sbjct: 98  AYAQNGNLQVAQAMFFRMPARNFVSWNAIIDGCAQGQDEALAKKVFDSMPQREVVSWTAM 157

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN---------------------- 308
           V+ Y+Q G LE A     +MP  N+VSWN MI     N                      
Sbjct: 158 VATYSQSGRLEEAQALLSKMPALNIVSWNVMIQAFADNLLVEEAKERFDRAPEHDFVSWN 217

Query: 309 ---KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM-QIHQMVTKTVIPDV 364
                Y    ++F+        P R   S    + S   +    M Q  ++  +    +V
Sbjct: 218 AIITAYAQTSQIFLARAAFDRMPQRDVVSWATMIQSYAQEGQPSMDQAKEIFDRAPQRNV 277

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLL--KNVVSWNAMIGGCASHGFATEALELFKSM 422
              N +IT Y+  G I ++R +FE M ++   ++VSWNA+I G   +G    AL+LF  M
Sbjct: 278 VSWNVMITGYSASGRIKQSRGLFERMPMMAEHDLVSWNALIAGHLDNGLDERALQLFLEM 337

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
                 P   ++ S L+ACA    +   R  H++  + + G+E       +LVD  G+ G
Sbjct: 338 DRRGCSPDPASYTSALAACAGLASLGAARDIHWR--LCKAGLETDAFVHNALVDFYGKSG 395

Query: 482 RLEDAMDLIKGMPFEPDKAVWGAL 505
           R+ DA  + + +    D   W AL
Sbjct: 396 RMADAELVFQSLA-SVDVVTWNAL 418



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 170/406 (41%), Gaps = 97/406 (23%)

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           ++  Y   GR  +A+ LFD+IP             R+ V+W+ +I  + K GD+  AR +
Sbjct: 1   MLTVYAHNGRPWDAKNLFDRIPGG-----------RDSVAWSCLIGAFVKIGDLEHARRV 49

Query: 225 FEQMLERDTFSWNTMISGYIHVL-----DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279
           F+ +L R    W  + S  I V        E A  +F+ MP  D + WNAM++ YAQ GN
Sbjct: 50  FD-LLPR----WTVVTSTAILVALAKRGKAENARAMFLAMPERDLVAWNAMITAYAQNGN 104

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           L++A   F RMP +N VSWN++I GC   +D   A K+F  M      P R   S     
Sbjct: 105 LQVAQAMFFRMPARNFVSWNAIIDGCAQGQDEALAKKVFDSM------PQREVVSW---- 154

Query: 340 SSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
                                        A++  Y++ G + EA+ +  +M  L N+VSW
Sbjct: 155 ----------------------------TAMVATYSQSGRLEEAQALLSKMPAL-NIVSW 185

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF----- 454
           N MI   A +    EA E F           ++++ ++++A A    +   R  F     
Sbjct: 186 NVMIQAFADNLLVEEAKERFDRAPEHD----FVSWNAIITAYAQTSQIFLARAAFDRMPQ 241

Query: 455 ------KSMVNEYGIE--PRIEHFASLVD-------------IVG--RHGRLEDAMDLIK 491
                  +M+  Y  E  P ++    + D             I G    GR++ +  L +
Sbjct: 242 RDVVSWATMIQSYAQEGQPSMDQAKEIFDRAPQRNVVSWNVMITGYSASGRIKQSRGLFE 301

Query: 492 GMPF--EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
            MP   E D   W AL+     H +  L + A +  ++++    +P
Sbjct: 302 RMPMMAEHDLVSWNALIAG---HLDNGLDERALQLFLEMDRRGCSP 344



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 17/197 (8%)

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           ++T+YA  G   +A+ +F+ +   ++ V+W+ +IG     G      +L  + R F +LP
Sbjct: 1   MLTVYAHNGRPWDAKNLFDRIPGGRDSVAWSCLIGAFVKIG------DLEHARRVFDLLP 54

Query: 430 --TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
             T +T  ++L A A  G  E  R  F +M      E  +  + +++    ++G L+ A 
Sbjct: 55  RWTVVTSTAILVALAKRGKAENARAMFLAMP-----ERDLVAWNAMITAYAQNGNLQVAQ 109

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
            +   MP   +   W A++  C    +  LA+   +++ + E  + T  V     Y+  G
Sbjct: 110 AMFFRMPAR-NFVSWNAIIDGCAQGQDEALAKKVFDSMPQREVVSWTAMV---ATYSQSG 165

Query: 548 RWDDANEVRLLMKSNNI 564
           R ++A  +   M + NI
Sbjct: 166 RLEEAQALLSKMPALNI 182


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 186/474 (39%), Positives = 281/474 (59%), Gaps = 20/474 (4%)

Query: 105 GDVANAIEFFDRMPGRDSASLSALVSGLIQNG--ELDEAARVLVKCGSRCDGGEDLVRAY 162
           G   +A+  F  MP RDS + S L+  L   G   +      +VK GS     ED     
Sbjct: 112 GAPRDALAAFSAMPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSV----EDTFVG- 166

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N LI  Y + G   +ARK+FD++P            +R++VSWN+ +    + G++   R
Sbjct: 167 NALIDAYSKNGGFSDARKVFDEMP------------ERDVVSWNTAMAAMVREGELAGVR 214

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
           ++F++M E+DT SWNT++ GY    ++E A  LF +MP  + ++W+ MVSGY + G+LE+
Sbjct: 215 KLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEM 274

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F +MP KNLV+W  M++ C      + A KLF QM+    + D     SIL+  + 
Sbjct: 275 ARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAE 334

Query: 343 IVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
              L LG +IH+ V K  +     + NALI M+ +CG +  A  +F+   + K+ VSWN+
Sbjct: 335 SGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNS 394

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           +IGG A HG   +ALELF  M+     P  +T I+VLSAC H G V+EGR+HF +M  +Y
Sbjct: 395 IIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDY 454

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           GI P+IEH+  ++D++GR G +++A+DLIK MP+EP++ +WG+LL ACR+H NVE A++A
Sbjct: 455 GIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIA 514

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
              L K++P N+  Y +L N+YA+ G+W D  + R+ MK    +K  G SWV+ 
Sbjct: 515 VNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVEL 568



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 174/357 (48%), Gaps = 57/357 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K    + ARK+FDEMP+RDVVSWN  ++  +     G L   R LFD MPE+D 
Sbjct: 169 LIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVRE---GELAGVRKLFDEMPEKDT 225

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT++ GY K GE+E A  LF  MP RNVVSW+ M+SG+ + GD+  A   FD+MP +
Sbjct: 226 VSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSK 285

Query: 121 DSASLSALVSGLIQNGELDEAAR-------------------VLVKC---GSRCDG---- 154
           +  + + +VS   Q G +DEA +                   +L  C   GS   G    
Sbjct: 286 NLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIH 345

Query: 155 ----GEDLVRAY---NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
                 +L R+    N LI  + + G V  A  +FD   V           +++ VSWNS
Sbjct: 346 RYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETV-----------QKDSVSWNS 394

Query: 208 MIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH-- 261
           +I  +A  G    A E+F QM ++    D  +   ++S   H+  ++E    F  M    
Sbjct: 395 IIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDY 454

Query: 262 ---PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
              P    +  M+    + G ++ A+D  K MP + N V W S+++ C  +K+ E A
Sbjct: 455 GIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYA 511



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 190/406 (46%), Gaps = 35/406 (8%)

Query: 18  FDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEME 77
           F  MP+RD  +++ +I    ++  +       ++  +    D    N +I  Y+K G   
Sbjct: 121 FSAMPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFS 180

Query: 78  EALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGE 137
           +A ++F+ MP R+VVSWN  ++  ++ G++A   + FD MP +D+ S + ++ G  + GE
Sbjct: 181 DARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGE 240

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           ++ A  +  +   R       V +++T++ GY ++G +E AR +FDK+P           
Sbjct: 241 VEAAFELFQRMPER------NVVSWSTMVSGYCKKGDLEMARVIFDKMP----------- 283

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD--MEEASNL 255
             +N+V+W  M+   A+ G V  A ++F QM E    S    ++  + +L    E  S  
Sbjct: 284 -SKNLVTWTIMVSACAQKGLVDEAGKLFAQMKE---ASVELDVAAVVSILAACAESGSLS 339

Query: 256 FVKMPH---------PDTLTWNAMVSGYAQIGNLELALDFF-KRMPQKNLVSWNSMIAGC 305
             K  H           T   NA++  + + G +  A   F     QK+ VSWNS+I G 
Sbjct: 340 LGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGF 399

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPD 363
             +   + A++LF QM+ +G  PD  T  ++LS  +  G VD       +      ++P 
Sbjct: 400 AMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQ 459

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           +     +I +  R G I EA  + + M    N V W +++  C  H
Sbjct: 460 IEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLH 505


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 185/476 (38%), Positives = 281/476 (59%), Gaps = 20/476 (4%)

Query: 104 NGDVANAIEFFDRMPGRDSASLSALVSGLIQNG--ELDEAARVLVKCGSRCDGGEDLVRA 161
            G   +A+  F  MP RDS + S L+  L   G   +      +VK GS  D        
Sbjct: 418 GGAPRDALAAFSAMPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVED-----TFV 472

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
            N LI  Y + G   +ARK+FD++P            +R++VSWN+ +    + G++   
Sbjct: 473 GNALIDAYSKNGGFSDARKVFDEMP------------ERDVVSWNTAMAAMVREGELAGV 520

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           R++F++M E+DT SWNT++ GY    ++E A  LF +MP  + ++W+ MVSGY + G+LE
Sbjct: 521 RKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLE 580

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
           +A   F +MP KNLV+W  M++ C      + A KLF QM+    + D     SIL+  +
Sbjct: 581 MARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACA 640

Query: 342 GIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
               L LG +IH+ V K  +     + NALI M+ +CG +  A  +F+   + K+ VSWN
Sbjct: 641 ESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWN 700

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           ++IGG A HG   +ALELF  M+     P  +T I+VLSAC H G V+EGR+HF +M  +
Sbjct: 701 SIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERD 760

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           YGI P+IEH+  ++D++GR G +++A+DLIK MP+EP++ +WG+LL ACR+H NVE A++
Sbjct: 761 YGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEI 820

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           A   L K++P N+  Y +L N+YA+ G+W D  + R+ MK    +K  G SWV+ +
Sbjct: 821 AVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELN 876



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 173/355 (48%), Gaps = 57/355 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K    + ARK+FDEMP+RDVVSWN  ++  +     G L   R LFD MPE+D 
Sbjct: 476 LIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVRE---GELAGVRKLFDEMPEKDT 532

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT++ GY K GE+E A  LF  MP RNVVSW+ M+SG+ + GD+  A   FD+MP +
Sbjct: 533 VSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSK 592

Query: 121 DSASLSALVSGLIQNGELDEAAR-------------------VLVKC---GSRCDG---- 154
           +  + + +VS   Q G +DEA +                   +L  C   GS   G    
Sbjct: 593 NLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIH 652

Query: 155 ----GEDLVRAY---NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
                 +L R+    N LI  + + G V  A  +FD   V           +++ VSWNS
Sbjct: 653 RYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETV-----------QKDSVSWNS 701

Query: 208 MIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH-- 261
           +I  +A  G    A E+F QM ++    D  +   ++S   H+  ++E    F  M    
Sbjct: 702 IIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDY 761

Query: 262 ---PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
              P    +  M+    + G ++ A+D  K MP + N V W S+++ C  +K+ E
Sbjct: 762 GIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVE 816



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 190/406 (46%), Gaps = 35/406 (8%)

Query: 18  FDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEME 77
           F  MP+RD  +++ +I    ++  +       ++  +    D    N +I  Y+K G   
Sbjct: 428 FSAMPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFS 487

Query: 78  EALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGE 137
           +A ++F+ MP R+VVSWN  ++  ++ G++A   + FD MP +D+ S + ++ G  + GE
Sbjct: 488 DARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGE 547

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           ++ A  +  +   R       V +++T++ GY ++G +E AR +FDK+P           
Sbjct: 548 VEAAFELFQRMPERN------VVSWSTMVSGYCKKGDLEMARVIFDKMP----------- 590

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD--MEEASNL 255
             +N+V+W  M+   A+ G V  A ++F QM E    S    ++  + +L    E  S  
Sbjct: 591 -SKNLVTWTIMVSACAQKGLVDEAGKLFAQMKE---ASVELDVAAVVSILAACAESGSLS 646

Query: 256 FVKMPH---------PDTLTWNAMVSGYAQIGNLELALDFF-KRMPQKNLVSWNSMIAGC 305
             K  H           T   NA++  + + G +  A   F     QK+ VSWNS+I G 
Sbjct: 647 LGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGF 706

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPD 363
             +   + A++LF QM+ +G  PD  T  ++LS  +  G VD       +      ++P 
Sbjct: 707 AMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQ 766

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           +     +I +  R G I EA  + + M    N V W +++  C  H
Sbjct: 767 IEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLH 812


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 197/514 (38%), Positives = 303/514 (58%), Gaps = 29/514 (5%)

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVS 130
           ++ A+ LF  +   +    N ++  ++   D   A+ F+     R     +  +   LV 
Sbjct: 108 VQHAVSLFEGLEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVK 167

Query: 131 GLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV 187
              + G + +  ++   ++K G   D     +   N+LI  Y   GR+ +AR +F+   +
Sbjct: 168 VCWEIGSIGDGEKIHARILKFGFELD-----LFVRNSLIHMYSVCGRIGDARAMFEVCSI 222

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL 247
           +            ++V+WNSMI  Y K G++ +ARE+FE+M ERD FSWN+MI+GY+   
Sbjct: 223 S------------DLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNG 270

Query: 248 DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
           DM  A +LF KMP  D ++WN M+ GYAQ+ N+E+A + F  MP +N+VSWN M+A    
Sbjct: 271 DMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVR 330

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV--TKTVIPDVP 365
            KDY+  +++F +M  E   P+  T  S+L+  + +  L  G  IH  +   + + PDV 
Sbjct: 331 IKDYDECLRMFDKMMGE-TMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVL 389

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           ++ AL+TMYA+CGA+  AR +F++M   ++VVSWN+MI G   HG A +ALE+F  M   
Sbjct: 390 LSTALLTMYAKCGAMDLARDVFDKMSN-RSVVSWNSMIMGYGMHGQADKALEMFLDMEKR 448

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
             +P   TFI VLSACAH+G++ EG  +F  M   Y IEP++EH+  +VD++GR G ++D
Sbjct: 449 GPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKD 508

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
             +LI+ MP E   A+WGALL ACR H+N ELA++ A+ L+++EP +  PY+LL N+YA 
Sbjct: 509 LEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAA 568

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVDFSPCG 579
            G+WDD   VR +MK   + K TG+SWV     G
Sbjct: 569 EGKWDDVEIVRKMMKERGLTKTTGFSWVHIEEFG 602



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 168/332 (50%), Gaps = 39/332 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI GYVK  E+  AR+LF+EMP+RD+ SWN MI+GY+   G+G +  A  LF+ MP RD 
Sbjct: 231 MIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYV---GNGDMTAAEDLFNKMPFRDI 287

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN +I GYA+   ME A  LFN MP RNVVSWN M++ +++  D    +  FD+M G 
Sbjct: 288 VSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGE 347

Query: 121 ---DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
              + A+L ++++     G LD    +     +      D++ +   L+  Y + G ++ 
Sbjct: 348 TMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLS-TALLTMYAKCGAMDL 406

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           AR +FDK+              R++VSWNSMIM Y   G    A E+F  M +R     +
Sbjct: 407 ARDVFDKMS------------NRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPND 454

Query: 238 T--------------MISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
                          ++ G+ +   M  A  +  K+ H     +  MV    + G ++  
Sbjct: 455 ATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEH-----YGCMVDLLGRAGLMKDL 509

Query: 284 LDFFKRMPQKNLVS-WNSMIAGCETNKDYEGA 314
            +  ++MP +   + W ++++ C T+ + E A
Sbjct: 510 EELIRKMPMEGGTALWGALLSACRTHSNSELA 541



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 190/383 (49%), Gaps = 29/383 (7%)

Query: 37  ISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNA 96
           I S G G    AR L     E D    N++I  Y+  G + +A  +F      ++V+WN+
Sbjct: 172 IGSIGDGEKIHARIL-KFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNS 230

Query: 97  MISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
           MI G+++NG++  A E F+ MP RD  S +++++G + NG++  A  +  K   R     
Sbjct: 231 MIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFR----- 285

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D+V ++N +I GY Q   +E A +LF+ +P             RN+VSWN M+  Y +  
Sbjct: 286 DIV-SWNCMIDGYAQVQNMEIACELFNWMPY------------RNVVSWNIMLALYVRIK 332

Query: 217 DVVSAREIFEQMLERDTFSWNTMIS-----GYIHVLDMEEASNLFVK---MPHPDTLTWN 268
           D      +F++M+     +  T++S      ++  LD  +  + ++K   +  PD L   
Sbjct: 333 DYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLST 392

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           A+++ YA+ G ++LA D F +M  +++VSWNSMI G   +   + A+++F+ M+  G  P
Sbjct: 393 ALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMP 452

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARII 386
           +  TF  +LS  +    +  G     ++ +   + P V     ++ +  R G + +   +
Sbjct: 453 NDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEEL 512

Query: 387 FEEMKLLKNVVSWNAMIGGCASH 409
             +M +      W A++  C +H
Sbjct: 513 IRKMPMEGGTALWGALLSACRTH 535



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 147/283 (51%), Gaps = 19/283 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y     +  AR +F+     D+V+WN MI GY+ +   G +  AR LF+ MPERD 
Sbjct: 200 LIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKN---GEIGAARELFEEMPERDL 256

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN++I+GY   G+M  A  LFN MP R++VSWN MI G+ Q  ++  A E F+ MP R
Sbjct: 257 FSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYR 316

Query: 121 DSASLSALVSGLIQNGELDEAARVLVK-CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           +  S + +++  ++  + DE  R+  K  G        LV    +++      GR++  +
Sbjct: 317 NVVSWNIMLALYVRIKDYDECLRMFDKMMGETMPNEATLV----SVLTACAHLGRLDRGK 372

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            +   I       + N   + +++   +++  YAK G +  AR++F++M  R   SWN+M
Sbjct: 373 WIHSYI-------KNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSM 425

Query: 240 ISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIG 278
           I GY      ++A  +F+ M    P P+  T+  ++S  A  G
Sbjct: 426 IMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSG 468


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 182/463 (39%), Positives = 276/463 (59%), Gaps = 20/463 (4%)

Query: 117 MPGRDSASLSALVSGLIQNG--ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
           MP RDS + S L+  L   G   +      +VK GS  D         N LI  Y + G 
Sbjct: 1   MPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVED-----TFVGNALIDAYSKNGG 55

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
             +ARK+FD++P            +R++VSWN+ +    + G++   R++F++M E+DT 
Sbjct: 56  FSDARKVFDEMP------------ERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTV 103

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
           SWNT++ GY    ++E A  LF +MP  + ++W+ MVSGY + G+LE+A   F +MP KN
Sbjct: 104 SWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKN 163

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           LV+W  M++ C      + A KLF QM+    + D     SIL+  +    L LG +IH+
Sbjct: 164 LVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHR 223

Query: 355 MVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
            V K  +     + NALI M+ +CG +  A  +F+   + K+ VSWN++IGG A HG   
Sbjct: 224 YVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGD 283

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           +ALELF  M+     P  +T I+VLSAC H G V+EGR+HF +M  +YGI P+IEH+  +
Sbjct: 284 KALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCM 343

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           +D++GR G +++A+DLIK MP+EP++ +WG+LL ACR+H NVE A++A   L K++P N+
Sbjct: 344 IDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNA 403

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
             Y +L N+YA+ G+W D  + R+ MK    +K  G SWV+ +
Sbjct: 404 GNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELN 446



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 174/357 (48%), Gaps = 57/357 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K    + ARK+FDEMP+RDVVSWN  ++  +     G L   R LFD MPE+D 
Sbjct: 46  LIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVRE---GELAGVRKLFDEMPEKDT 102

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT++ GY K GE+E A  LF  MP RNVVSW+ M+SG+ + GD+  A   FD+MP +
Sbjct: 103 VSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSK 162

Query: 121 DSASLSALVSGLIQNGELDEAAR-------------------VLVKC---GSRCDG---- 154
           +  + + +VS   Q G +DEA +                   +L  C   GS   G    
Sbjct: 163 NLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIH 222

Query: 155 ----GEDLVRAY---NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
                 +L R+    N LI  + + G V  A  +FD   V           +++ VSWNS
Sbjct: 223 RYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETV-----------QKDSVSWNS 271

Query: 208 MIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH-- 261
           +I  +A  G    A E+F QM ++    D  +   ++S   H+  ++E    F  M    
Sbjct: 272 IIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDY 331

Query: 262 ---PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
              P    +  M+    + G ++ A+D  K MP + N V W S+++ C  +K+ E A
Sbjct: 332 GIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYA 388



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 189/403 (46%), Gaps = 35/403 (8%)

Query: 21  MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEAL 80
           MP+RD  +++ +I    ++  +       ++  +    D    N +I  Y+K G   +A 
Sbjct: 1   MPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 60

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
           ++F+ MP R+VVSWN  ++  ++ G++A   + FD MP +D+ S + ++ G  + GE++ 
Sbjct: 61  KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 120

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A  +  +   R       V +++T++ GY ++G +E AR +FDK+P             +
Sbjct: 121 AFELFQRMPERN------VVSWSTMVSGYCKKGDLEMARVIFDKMP------------SK 162

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD--MEEASNLFVK 258
           N+V+W  M+   A+ G V  A ++F QM E    S    ++  + +L    E  S    K
Sbjct: 163 NLVTWTIMVSACAQKGLVDEAGKLFAQMKEA---SVELDVAAVVSILAACAESGSLSLGK 219

Query: 259 MPH---------PDTLTWNAMVSGYAQIGNLELALDFF-KRMPQKNLVSWNSMIAGCETN 308
             H           T   NA++  + + G +  A   F     QK+ VSWNS+I G   +
Sbjct: 220 RIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMH 279

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPI 366
              + A++LF QM+ +G  PD  T  ++LS  +  G VD       +      ++P +  
Sbjct: 280 GHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEH 339

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
              +I +  R G I EA  + + M    N V W +++  C  H
Sbjct: 340 YGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLH 382


>gi|302802806|ref|XP_002983157.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
 gi|300149310|gb|EFJ15966.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
          Length = 704

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 202/574 (35%), Positives = 312/574 (54%), Gaps = 61/574 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEAR-YLFDIMPERD 59
           MI+GY +  ++A A  +FD  P+ +V+SWN +I+GY  +R    + EA+  +FD MP R+
Sbjct: 62  MITGYAQSGDLAGATAMFDRTPEHNVISWNALITGYSDNR---MIPEAKGVIFDEMPRRE 118

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            V+WN ++S YA+ G +  A   F  MP  +VV+W A+I+   QNG +  A   +D +P 
Sbjct: 119 EVSWNALLSAYAQAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPE 178

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           RD  + +AL+     NG+L E+ RV      R         ++  +I+ Y Q G V +AR
Sbjct: 179 RDLVAWTALIQAYGVNGQLTESKRVYALMPERNR------VSHTAMIIAYSQNGEVVQAR 232

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           K+ D +P + D+            +  SMI+ YA+ G +  ARE+F+ +   D  + N M
Sbjct: 233 KMLDTLP-DPDQS-----------TRTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAM 280

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           +  Y     ++ A  +F  +     ++WN MV+ YAQ GNL+ A   F  +P KN+VS N
Sbjct: 281 MEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHN 340

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
            M+     N D   A ++F  M    ++ D  T++                         
Sbjct: 341 VMVVAYAHNMDLAEARRIFYSM----DEKDTVTWT------------------------- 371

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
                    A++ M A+ G + EA+ +F +M   +NVVSWN++I G AS G    A+   
Sbjct: 372 ---------AMVAMLAQHGRLAEAQELFAKMPY-RNVVSWNSLIAGMASCGHGMAAVRYL 421

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             MR+    P +ITF+ +L AC+H GLVEEG  HF SM  ++G+ P  EH+  +VD++GR
Sbjct: 422 YVMRNEGAKPDHITFMGILIACSHVGLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLGR 481

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G+L  A +L++ MPF PD   WG+LLG+C+ H++V+L   AAE+L++ + ++S PYVLL
Sbjct: 482 AGQLGAARELLETMPFIPDVGAWGSLLGSCKTHSDVKLGTRAAESLLQFDDQSSGPYVLL 541

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            NMY+ VGR  DA  VR  MK+  +KK  G S +
Sbjct: 542 ANMYSSVGRVADALAVRNRMKARGVKKQPGVSLI 575



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 220/441 (49%), Gaps = 41/441 (9%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           Y++ G++  A  +F+ +P+ NVVSWN++I+GF Q+G ++NA E F RMP   S+S ++++
Sbjct: 4   YSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMI 63

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK-LFDKIPVN 188
           +G  Q+G+L  A  +  +        E  V ++N LI GY     + EA+  +FD++P  
Sbjct: 64  TGYAQSGDLAGATAMFDRT------PEHNVISWNALITGYSDNRMIPEAKGVIFDEMP-- 115

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                     +R  VSWN+++  YA+AG V  AR  FE+M   D  +W  +I+       
Sbjct: 116 ----------RREEVSWNALLSAYAQAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQ 165

Query: 249 MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           +EEA  L+  +P  D + W A++  Y   G L  +   +  MP++N VS  +MI     N
Sbjct: 166 LEEAEVLYDLIPERDLVAWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQN 225

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSIL--SMSSGIVDLHLGMQIHQMVTKTVIPDVPI 366
            +   A K+   +      PD+ T +S++     +G +         +M      PDV  
Sbjct: 226 GEVVQARKMLDTL----PDPDQSTRTSMIVAYAQNGYIK-----DAREMFDSIKNPDVIA 276

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            NA++  Y+    +  A+ +F+ +K  K +VSWN M+   A  G   EA  +F S+    
Sbjct: 277 CNAMMEAYSSAQMLDHAKAMFDSIK-QKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKN 335

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           V+   +  +    A AH   + E R+ F SM  +  +      + ++V ++ +HGRL +A
Sbjct: 336 VVSHNVMVV----AYAHNMDLAEARRIFYSMDEKDTVT-----WTAMVAMLAQHGRLAEA 386

Query: 487 MDLIKGMPFEPDKAVWGALLG 507
            +L   MP+  +   W +L+ 
Sbjct: 387 QELFAKMPYR-NVVSWNSLIA 406



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 172/351 (49%), Gaps = 28/351 (7%)

Query: 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN 268
           +  Y++ GD+ SA+ IF+Q+   +  SWN++I+G+     M  A  +F +MP   + +WN
Sbjct: 1   MQVYSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWN 60

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           +M++GYAQ G+L  A   F R P+ N++SWN++I G   N+    A  +        E P
Sbjct: 61  SMITGYAQSGDLAGATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVIFD-----EMP 115

Query: 329 DRH--TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARII 386
            R   +++++LS  +    +HL     + + +    DV    ALI +  + G + EA ++
Sbjct: 116 RREEVSWNALLSAYAQAGHVHLARSTFERMPRH---DVVAWTALIAVSGQNGQLEEAEVL 172

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP--TYITFISVLSACAHA 444
           ++ +   +++V+W A+I     +G      +L +S R + ++P    ++  +++ A +  
Sbjct: 173 YDLIP-ERDLVAWTALIQAYGVNG------QLTESKRVYALMPERNRVSHTAMIIAYSQN 225

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           G V + R+   ++      +P      S++    ++G ++DA ++   +   PD     A
Sbjct: 226 GEVVQARKMLDTLP-----DPDQSTRTSMIVAYAQNGYIKDAREMFDSIK-NPDVIACNA 279

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           ++ A   +++ ++   A      ++ +    +  +   YA  G  D+A  +
Sbjct: 280 MMEA---YSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSI 327


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  354 bits (908), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 209/651 (32%), Positives = 336/651 (51%), Gaps = 99/651 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY--ISSRGSGF-------------- 44
           M++GY   R+M  A  LF +MPQR++V+W VMISGY  I   G G+              
Sbjct: 163 MVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPD 222

Query: 45  -------------LEEARYLFDIMP-------ERDCVTWNTVISGYAKTGE-MEEALRLF 83
                        L++   L  + P       E D V   ++++ Y +    ++ A++ F
Sbjct: 223 QSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFF 282

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
           + M  RN  +W+ MI+     G +  AI  + R P +   S +AL++GL + G + EA R
Sbjct: 283 DGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEA-R 341

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
           +L +        + +V ++N +I GY Q G V+EA++LFD++P             RN +
Sbjct: 342 ILFE-----QIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPF------------RNTI 384

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERD------------------------------- 232
           SW  MI  YA+ G    A ++  Q L R+                               
Sbjct: 385 SWAGMIAGYAQNGRSEEALDLL-QALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSL 443

Query: 233 ---------TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
                    ++  N +IS Y    +ME    +F +M   DT++WN+ ++   Q   LE A
Sbjct: 444 AVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDA 503

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F  M  +++VSW ++I+     +  + A++ F  M  E EKP+    + +LS+  G+
Sbjct: 504 RHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGL 563

Query: 344 VDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
               LG QIH +  K  +  ++ + NAL++MY +CG   ++  +F+ M+  +++ +WN  
Sbjct: 564 GSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGC-ADSHKVFDSMEE-RDIFTWNTF 621

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I GCA HG   EA+++++ M S  VLP  +TF+ +L+AC+HAGLV+EG Q FKSM  +YG
Sbjct: 622 ITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYG 681

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           + P +EH+A +VD++GR G ++ A   I  MP EPD  +W ALLGAC++H N E+ + AA
Sbjct: 682 LTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAA 741

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           E L   EP N+  YV+L N+Y+ +G W +  E+R +MK   + K  G SW+
Sbjct: 742 EKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWM 792



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 156/522 (29%), Positives = 256/522 (49%), Gaps = 86/522 (16%)

Query: 9   REMAK------ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVT 62
           RE+A+      AR++FD MP RD+++WN MIS Y +S   G LE+AR LFD +   +  T
Sbjct: 41  RELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNS---GMLEDARILFDAISGGNVRT 97

Query: 63  WNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS 122
              ++SGYA+ G + +A R+F+ MP RN V+WNAM+S ++QNGD+  A   FD MP RD 
Sbjct: 98  ATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDV 157

Query: 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
            S +++V+G   + ++ +A  +  +   R     +LV  +  +I GY    R+E+  K +
Sbjct: 158 TSWNSMVTGYCHSRQMVDAWNLFKQMPQR-----NLV-TWTVMISGY---VRIEQHGKGW 208

Query: 183 DKIPVNCDRGEG------------------------------NVRFKRNIVSWNSMIMCY 212
           D   +    G                                   F+ ++V   S++  Y
Sbjct: 209 DIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVY 268

Query: 213 AKAGDVVS-AREIFEQMLERDTFSWNTMISGYIH--VLD--------------------- 248
            +    +  A + F+ M+ER+ ++W+TMI+   H   +D                     
Sbjct: 269 TRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALL 328

Query: 249 --------MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
                   + EA  LF ++P P  ++WNAM++GY Q G ++ A + F RMP +N +SW  
Sbjct: 329 TGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAG 388

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           MIAG   N   E A+ L   +   G  P   + +S     S I  L  G Q+H +  K  
Sbjct: 389 MIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAG 448

Query: 361 IP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              +  + NALI+MY +C  +   R +F  M+ +K+ VSWN+ I     +    +A  +F
Sbjct: 449 CQFNSYVCNALISMYGKCRNMEYVRQVFNRMR-VKDTVSWNSFIAALVQNNMLEDARHIF 507

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
            +M S  V    +++ +++SA A A   +E  + FK+M++E+
Sbjct: 508 DNMLSRDV----VSWTTIISAYAQAERGDEAVEFFKTMLHEH 545



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 149/550 (27%), Positives = 264/550 (48%), Gaps = 48/550 (8%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G L EAR +FD MP RD + WN++IS Y  +G +E+A  LF+++   NV +   ++SG+ 
Sbjct: 47  GRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSGYA 106

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
           + G V +A   FD MP R++ + +A+VS  +QNG++  A R+     SR       V ++
Sbjct: 107 RLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRD------VTSW 160

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N+++ GY    ++ +A  LF ++P            +RN+V+W  MI  Y +        
Sbjct: 161 NSMVTGYCHSRQMVDAWNLFKQMP------------QRNLVTWTVMISGYVRIEQHGKGW 208

Query: 223 EIFEQMLER----DTFSWNTMISGYIHVLD---MEEASNLFVKMP-HPDTLTWNAMVSGY 274
           +IF  M       D  ++ +++S    + D   +E    L +K     D +   ++++ Y
Sbjct: 209 DIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVY 268

Query: 275 AQIGN-LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
            +  + L++A+ FF  M ++N  +W++MIA        + AI ++      G  P     
Sbjct: 269 TRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVY------GRDP----V 318

Query: 334 SSILSMSSGIVDL-HLGMQIHQMVTKTVIPDVPIN---NALITMYARCGAIVEARIIFEE 389
            SI S ++ +  L   G      +    IPD PI    NA+IT Y + G + EA+ +F+ 
Sbjct: 319 KSIPSQTALLTGLARCGRITEARILFEQIPD-PIVVSWNAMITGYMQNGMVDEAKELFDR 377

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           M   +N +SW  MI G A +G + EAL+L +++    +LP+  +  S   AC+H G +E 
Sbjct: 378 MP-FRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALET 436

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           GRQ   S+  + G +       +L+ + G+   +E    +   M  + D   W + + A 
Sbjct: 437 GRQ-VHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVK-DTVSWNSFIAAL 494

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
             +N +E A+   + ++     +   +  + + YA   R D+A E    M   + K  + 
Sbjct: 495 VQNNMLEDARHIFDNMLS---RDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSP 551

Query: 570 YSWVDFSPCG 579
              +  S CG
Sbjct: 552 ILTILLSVCG 561



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/449 (28%), Positives = 210/449 (46%), Gaps = 66/449 (14%)

Query: 86  MPARNV------VSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELD 139
           +P R+V       + +A I    + G +  A E FD MP RD  + ++++S    +G L 
Sbjct: 22  LPVRSVHRALDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGML- 80

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           E AR+L    S   GG   VR    L+ GY + GRV +AR++FD +P            +
Sbjct: 81  EDARILFDAIS---GGN--VRTATILLSGYARLGRVLDARRVFDGMP------------E 123

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
           RN V+WN+M+ CY + GD+  AR +F+ M  RD  SWN+M++GY H   M +A NLF +M
Sbjct: 124 RNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQM 183

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
           P  + +TW  M+SGY +I       D F+ M                             
Sbjct: 184 PQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHH--------------------------- 216

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCG 378
               EG  PD+  F+S+LS  +G+ DL +   +  +V KT    DV I  +++ +Y R  
Sbjct: 217 ----EGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDA 272

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
           + ++  I F +  + +N  +W+ MI    SHG   +A          K +P+    ++ L
Sbjct: 273 SALDIAIKFFDGMVERNEYTWSTMIAAL-SHGGRIDAAIAVYGRDPVKSIPSQTALLTGL 331

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           + C   G + E R  F+ +      +P +  + +++    ++G +++A +L   MPF  +
Sbjct: 332 ARC---GRITEARILFEQIP-----DPIVVSWNAMITGYMQNGMVDEAKELFDRMPFR-N 382

Query: 499 KAVWGALLGACRVHNNVELAQVAAEALMK 527
              W  ++     +   E A    +AL +
Sbjct: 383 TISWAGMIAGYAQNGRSEEALDLLQALHR 411


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 191/525 (36%), Positives = 308/525 (58%), Gaps = 30/525 (5%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----G 119
           NT++S YAK G + +A R+F+ +  RN+VSW AMI  F+       A + ++ M      
Sbjct: 135 NTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCK 194

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG-YGQRGRVEEA 178
            D  +  +L++       L    +V ++       G +L     T +VG Y + G + +A
Sbjct: 195 PDKVTFVSLLNAFTNPELLQVGQKVHMEIAK---AGLELEPRVGTSLVGMYAKCGDISKA 251

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----F 234
           + +FDK+P            ++N+V+W  +I  YA+ G V  A E+ E+M + +      
Sbjct: 252 QVIFDKLP------------EKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKI 299

Query: 235 SWNTMISGYIHVLDMEEASNL--FVKMPHPDTLTW--NAMVSGYAQIGNLELALDFFKRM 290
           ++ +++ G    L +E    +  ++         W  NA+++ Y + G L+ A   F  +
Sbjct: 300 TYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDL 359

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
           P +++V+W +M+ G      ++ AI LF +MQ +G KPD+ TF+S L+  S    L  G 
Sbjct: 360 PHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGK 419

Query: 351 QIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            IHQ +V      DV + +AL++MYA+CG++ +AR++F +M   +NVV+W AMI GCA H
Sbjct: 420 SIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSE-RNVVAWTAMITGCAQH 478

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G   EALE F+ M+   + P  +TF SVLSAC H GLVEEGR+HF+SM  +YGI+P +EH
Sbjct: 479 GRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEH 538

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           ++  VD++GR G LE+A ++I  MPF+P  +VWGALL ACR+H++VE  + AAE ++K++
Sbjct: 539 YSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLD 598

Query: 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           P++   YV L N+YA  GR++DA +VR +M+  ++ K  G SW++
Sbjct: 599 PDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIE 643



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 217/465 (46%), Gaps = 76/465 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++S Y K   +  AR++FD +  R++VSW  MI  +++  G+  L EA   ++ M    C
Sbjct: 137 LLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVA--GNQNL-EAYKCYETMKLAGC 193

Query: 61  ----VTW-----------------------------------NTVISGYAKTGEMEEALR 81
               VT+                                    +++  YAK G++ +A  
Sbjct: 194 KPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQV 253

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA----SLSALVSGLIQNGE 137
           +F+ +P +NVV+W  +I+G+ Q G V  A+E  ++M   + A    + ++++ G      
Sbjct: 254 IFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLA 313

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           L+   +V   +++ G    G E  +   N LI  Y + G ++EARKLF  +P        
Sbjct: 314 LEHGKKVHRYIIQSGY---GRE--IWVVNALITMYCKCGGLKEARKLFGDLP-------- 360

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME 250
                R++V+W +M+  YA+ G    A ++F +M ++    D  ++ + ++       ++
Sbjct: 361 ----HRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQ 416

Query: 251 EASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           E  ++  ++ H     D    +A+VS YA+ G+++ A   F +M ++N+V+W +MI GC 
Sbjct: 417 EGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCA 476

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDV 364
            +     A++ F QM+ +G KPD+ TF+S+LS  +  G+V+          +   + P V
Sbjct: 477 QHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMV 536

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
              +  + +  R G + EA  +   M        W A++  C  H
Sbjct: 537 EHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIH 581



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 169/334 (50%), Gaps = 21/334 (6%)

Query: 187 VNCDRGEGNVRFKRNIVSWNS---MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           V+ D+  GN  F++     NS    I+C  K G +  A  I   M+ + T  ++ +  G 
Sbjct: 45  VSHDQLPGNAGFRKVDTLANSGDVSILC--KQGRLKEALGILNTMILQGTRVYSDVFRGL 102

Query: 244 IH----VLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           +     +  +E+   +   +      P+    N ++S YA+ G+L  A   F  +  +N+
Sbjct: 103 LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNI 162

Query: 296 VSWNSMI-AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           VSW +MI A    N++ E A K +  M++ G KPD+ TF S+L+  +    L +G ++H 
Sbjct: 163 VSWTAMIEAFVAGNQNLE-AYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHM 221

Query: 355 MVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
            + K  +   P +  +L+ MYA+CG I +A++IF+++   KNVV+W  +I G A  G   
Sbjct: 222 EIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLP-EKNVVTWTLLIAGYAQQGQVD 280

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE-YGIEPRIEHFAS 472
            ALEL + M+  +V P  IT+ S+L  C     +E G++  + ++   YG E  I    +
Sbjct: 281 VALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGRE--IWVVNA 338

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           L+ +  + G L++A  L   +P   D   W A++
Sbjct: 339 LITMYCKCGGLKEARKLFGDLPHR-DVVTWTAMV 371



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 166/368 (45%), Gaps = 76/368 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD- 59
           ++  Y K  +++KA+ +FD++P+++VV+W ++I+GY      G ++ A  L + M + + 
Sbjct: 238 LVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQ---GQVDVALELLEKMQQAEV 294

Query: 60  -------------CVT-----------------------W--NTVISGYAKTGEMEEALR 81
                        C T                       W  N +I+ Y K G ++EA +
Sbjct: 295 APNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARK 354

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           LF  +P R+VV+W AM++G+ Q G    AI+ F RM  +    D  + ++ ++       
Sbjct: 355 LFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAF 414

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           L E   +   LV  G   D     V   + L+  Y + G +++AR +F+++         
Sbjct: 415 LQEGKSIHQQLVHAGYSLD-----VYLQSALVSMYAKCGSMDDARLVFNQMS-------- 461

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDME 250
               +RN+V+W +MI   A+ G    A E FEQM    ++ D  ++ +++S   HV  +E
Sbjct: 462 ----ERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVE 517

Query: 251 EASNLFVKM-----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAG 304
           E    F  M       P    ++  V    + G+LE A +    MP Q     W ++++ 
Sbjct: 518 EGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSA 577

Query: 305 CETNKDYE 312
           C  + D E
Sbjct: 578 CRIHSDVE 585



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 150/354 (42%), Gaps = 95/354 (26%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I+ Y K   + +ARKLF ++P RDVV+W  M++GY      GF +EA  LF  M ++  
Sbjct: 339 LITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQL---GFHDEAIDLFRRMQQQGI 395

Query: 59  -------------------------------------DCVTWNTVISGYAKTGEMEEALR 81
                                                D    + ++S YAK G M++A  
Sbjct: 396 KPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARL 455

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +FN M  RNVV+W AMI+G  Q+G    A+E+F++M  +    D  + ++++S     G 
Sbjct: 456 VFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVG- 514

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV---------- 187
           L E  R   +      G + +V  Y+  +   G+ G +EEA  +   +P           
Sbjct: 515 LVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGAL 574

Query: 188 --------NCDRGEGNVRFKRNIV--------SWNSMIMCYAKAGDVVSAREIFEQMLER 231
                   + +RGE   R   N++        ++ ++   YA AG    A ++ + M +R
Sbjct: 575 LSACRIHSDVERGE---RAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKR 631

Query: 232 DTF-----SWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNL 280
           D       SW   + G +HV  +E+ S       HP+          YA++G L
Sbjct: 632 DVVKEPGQSW-IEVDGKVHVFHVEDKS-------HPEAKEI------YAELGKL 671


>gi|302767812|ref|XP_002967326.1| hypothetical protein SELMODRAFT_30579 [Selaginella moellendorffii]
 gi|300165317|gb|EFJ31925.1| hypothetical protein SELMODRAFT_30579 [Selaginella moellendorffii]
          Length = 569

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 186/552 (33%), Positives = 310/552 (56%), Gaps = 27/552 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I G  + ++ A A+K+FD MPQR+VVSW  M++ Y  S   G LEEAR L   MP  + 
Sbjct: 39  IIDGCAQGQDEALAKKVFDSMPQREVVSWTAMVATYSQS---GRLEEARALLSKMPALNI 95

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN +I  +A    +E+A   F+  P  + VSWNA+I+ + Q   +  A   FDRMP R
Sbjct: 96  VSWNVMIQAFADNLLVEDAKERFDRAPEHDFVSWNAIITAYAQTSQIFLARAAFDRMPQR 155

Query: 121 DSASLSALVSGLIQNGE--LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
           D  S + ++    Q G+  +D+A  +  +   R       V ++N +I GY   GR+++A
Sbjct: 156 DVVSWATMIQSYAQEGQPSMDQAKEIFDRAPQRN------VVSWNVMITGYSASGRIKQA 209

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT 238
           + +FD +P            +++++SW +++  Y +   +  A+ +F++M   +    NT
Sbjct: 210 KAVFDTMP------------QKDVISWAALVAGYLQNQQLAEAKRVFDRMPATNAVCCNT 257

Query: 239 MISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN--LV 296
           +++ +     M E  +LF +MP     +W+ M+ GYAQ G+   A  FF RMPQ++  LV
Sbjct: 258 VMASFAGADRMPETRSLFDRMPERTLASWSTMLGGYAQSGHTASAKSFFDRMPQRDHDLV 317

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SWN++IAG   N   E A++LF++M   G  PD  +++S L+  +G+  L     IH  +
Sbjct: 318 SWNALIAGHLDNGLDERALQLFLEMDRRGCSPDPASYASALAACAGLASLGAARDIHWRL 377

Query: 357 TKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            K  +  D  ++NAL+  Y + G + +A ++F+ +  + +VV+WNA+  G +  G     
Sbjct: 378 CKAGLETDAFVHNALVDFYGKSGRMADAELVFQSLASV-DVVTWNALAAGFSRQGSYRLV 436

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           ++L  +++   + P  ITF+++L+A  HAGLV+ GR+ F +MV  Y IE  IEH+  LVD
Sbjct: 437 VDLLWAIKDQGLEPDGITFLALLAAYGHAGLVDHGRRAFAAMVESYRIEAGIEHYHCLVD 496

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++GR  RLE+A+  +  MP  P    W  +L  C    N+++A VA E+L+ ++P+    
Sbjct: 497 MLGRANRLEEALAEVAAMPHRPSSVTWTTVLSTCVKWKNLDVASVAFESLLGIDPDGPAA 556

Query: 536 YVLLYNMYADVG 547
           YVL+ N+Y   G
Sbjct: 557 YVLMANVYGSAG 568



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 155/362 (42%), Gaps = 40/362 (11%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           ++V+WN+MI  YA+ G++  A+ +F +M  R+  SWN +I G     D   A  +F  MP
Sbjct: 1   DLVAWNAMITAYAQNGNLQVAQAMFFRMPARNFVSWNAIIDGCAQGQDEALAKKVFDSMP 60

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN------------ 308
             + ++W AMV+ Y+Q G LE A     +MP  N+VSWN MI     N            
Sbjct: 61  QREVVSWTAMVATYSQSGRLEEARALLSKMPALNIVSWNVMIQAFADNLLVEDAKERFDR 120

Query: 309 -------------KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM-QIHQ 354
                          Y    ++F+        P R   S    + S   +    M Q  +
Sbjct: 121 APEHDFVSWNAIITAYAQTSQIFLARAAFDRMPQRDVVSWATMIQSYAQEGQPSMDQAKE 180

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           +  +    +V   N +IT Y+  G I +A+ +F+ M   K+V+SW A++ G   +    E
Sbjct: 181 IFDRAPQRNVVSWNVMITGYSASGRIKQAKAVFDTMP-QKDVISWAALVAGYLQNQQLAE 239

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           A  +F  M +       +   +V+++ A A  + E R  F  M      E  +  +++++
Sbjct: 240 AKRVFDRMPATNA----VCCNTVMASFAGADRMPETRSLFDRMP-----ERTLASWSTML 290

Query: 475 DIVGRHGRLEDAMDLIKGMP-FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
               + G    A      MP  + D   W AL+     H +  L + A +  ++++    
Sbjct: 291 GGYAQSGHTASAKSFFDRMPQRDHDLVSWNALIAG---HLDNGLDERALQLFLEMDRRGC 347

Query: 534 TP 535
           +P
Sbjct: 348 SP 349


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 221/636 (34%), Positives = 337/636 (52%), Gaps = 91/636 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           +I+ ++K  ++  A K+FD +P RD+V+W  MI+G       G  ++A  LF  M E   
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH---GRFKQACNLFQRMEEEGV 308

Query: 58  -----------RDC------------------VTWNT-------VISGYAKTGEMEEALR 81
                      R C                  V W+T       ++S Y K G ME+AL 
Sbjct: 309 QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDS--------ASLSA 127
           +F+ +  RNVVSW AMI+GF Q+G +  A  FF++M      P R +        +S SA
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSA 428

Query: 128 LVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV 187
           L  G      + EA            G +D VR    L+  Y + G +++A ++F+KI  
Sbjct: 429 LKRGQQIQDHIIEAGY----------GSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS- 475

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL 247
                      K+N+V+WN+MI  Y +     +A   F+ +L+      ++  +  ++V 
Sbjct: 476 -----------KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVC 524

Query: 248 DMEEASNL-----FVKMP---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
              ++  L     F+ M      D    NA+VS +   G+L  A + F  MP+++LVSWN
Sbjct: 525 KSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWN 584

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           ++IAG   +   + A   F  MQ  G KPD+ TF+ +L+  +    L  G ++H ++T+ 
Sbjct: 585 TIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEA 644

Query: 360 VIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
               DV +   LI+MY +CG+I +A  +F ++   KNV SW +MI G A HG   EALEL
Sbjct: 645 AFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPK-KNVYSWTSMIAGYAQHGRGKEALEL 703

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  M+   V P +ITF+  LSACAHAGL+EEG  HF+SM  E+ IEPR+EH+  +VD+ G
Sbjct: 704 FYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFG 762

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           R G L +A++ I  M  EPD  VWGALLGAC+VH NVELA+ AA+  ++++P ++  +V+
Sbjct: 763 RAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVI 822

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           L N+YA  G W +  ++R +M    + K  G SW++
Sbjct: 823 LSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIE 858



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 144/583 (24%), Positives = 261/583 (44%), Gaps = 118/583 (20%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM- 117
           D    NT+I+ YAK G    A ++F+ M  ++V SWN ++ G++Q+G    A +  ++M 
Sbjct: 144 DIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203

Query: 118 -------------------------PGRDSASL-------------SALVSGLIQNGELD 139
                                     GR+  +L             +AL++  I+ G++ 
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIG 263

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF----------DKIPV-- 187
           +A +V     +R     DLV  + ++I G  + GR ++A  LF          DK+    
Sbjct: 264 DATKVFDNLPTR-----DLV-TWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVS 317

Query: 188 ---NCDRGEG-----NVRFKRNIVSWNSMIMC-------YAKAGDVVSAREIFEQMLERD 232
               C+  E       V  +   V W++ I         Y K G +  A E+F+ +  R+
Sbjct: 318 LLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRN 377

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW--------------------- 267
             SW  MI+G+     ++EA   F KM      P+ +T+                     
Sbjct: 378 VVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQD 437

Query: 268 --------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
                          A++S YA+ G+L+ A   F+++ ++N+V+WN+MI     ++ Y+ 
Sbjct: 438 HIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDN 497

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALIT 372
           A+  F  +  EG KP+  TF+SIL++      L LG  +H ++ K  +  D+ ++NAL++
Sbjct: 498 ALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVS 557

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           M+  CG ++ A+ +F +M   +++VSWN +I G   HG    A + FK M+   + P  I
Sbjct: 558 MFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKI 616

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TF  +L+ACA    + EGR+   +++ E   +  +     L+ +  + G +EDA  +   
Sbjct: 617 TFTGLLNACASPEALTEGRR-LHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHK 675

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           +P + +   W +++     H      + A E   +++ E   P
Sbjct: 676 LP-KKNVYSWTSMIAGYAQHGR---GKEALELFYQMQQEGVKP 714



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 149/643 (23%), Positives = 264/643 (41%), Gaps = 157/643 (24%)

Query: 58  RDCVTWNTVISGYAKTGEMEEAL-----------------------------------RL 82
           +D    N V++  +K G+  EA+                                   R+
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 83  FNSMPAR----NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGEL 138
           +N +       ++   N +I+ + + G+  +A + FD M  +D  S + L+ G +Q+G  
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 139 DEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           +EA ++   +V+   + D      R + +++        V++ R+L++ I          
Sbjct: 193 EEAFKLHEQMVQDSVKPDK-----RTFVSMLNACADARNVDKGRELYNLIL--------K 239

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
             +  ++    ++I  + K GD+  A ++F+ +  RD  +W +MI+G       ++A NL
Sbjct: 240 AGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNL 299

Query: 256 FVKMP-------------------HPDTLT-------------WN-------AMVSGYAQ 276
           F +M                    HP+ L              W+       A++S Y +
Sbjct: 300 FQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTK 359

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            G++E AL+ F  +  +N+VSW +MIAG   +   + A   F +M   G +P+R TF SI
Sbjct: 360 CGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSI 419

Query: 337 LSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           L   S    L  G QI   + +     D  +  AL++MYA+CG++ +A  +FE++   +N
Sbjct: 420 LGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQN 478

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR-QHF 454
           VV+WNAMI     H     AL  F+++    + P   TF S+L+ C  +  +E G+  HF
Sbjct: 479 VVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHF 538

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP-------------------- 494
             ++ + G+E  +    +LV +    G L  A +L   MP                    
Sbjct: 539 --LIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKN 596

Query: 495 --------------FEPDKAVWGALLGAC----------RVHNNVELAQVAAEALMKVEP 530
                          +PDK  +  LL AC          R+H  +  A    + L+    
Sbjct: 597 QVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTG- 655

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
                   L +MY   G  +DA++V   +   N+     YSW 
Sbjct: 656 --------LISMYTKCGSIEDAHQVFHKLPKKNV-----YSWT 685



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 199/437 (45%), Gaps = 51/437 (11%)

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFK-RNIVSWNSMIMCYAKAGDVVSAREIFEQM----- 228
           +E  R L       C +G   V    ++    N+++   +KAG    A ++ E++     
Sbjct: 47  IETLRMLTTSFSGRCPKGRCVVFADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHI 106

Query: 229 -LERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELA 283
            + R T+S   ++   I   ++ +   ++  +      PD    N +++ YA+ GN   A
Sbjct: 107 QIYRQTYS--ALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISA 164

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F  M +K++ SWN ++ G   +  YE A KL  QM  +  KPD+ TF S+L+  +  
Sbjct: 165 KQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADA 224

Query: 344 VDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
            ++  G +++ ++ K     D+ +  ALI M+ +CG I +A  +F+ +   +++V+W +M
Sbjct: 225 RNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLP-TRDLVTWTSM 283

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I G A HG   +A  LF+ M    V P  + F+S+L AC H   +E+G++    M  E G
Sbjct: 284 ITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARM-KEVG 342

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAM---DLIKGMP------------------------- 494
            +  I    +++ +  + G +EDA+   DL+KG                           
Sbjct: 343 WDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFN 402

Query: 495 ------FEPDKAVWGALLGACRVHNNVELAQVAAEALMKV-EPENSTPYVLLYNMYADVG 547
                  EP++  + ++LGAC   + ++  Q   + +++     +      L +MYA  G
Sbjct: 403 KMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCG 462

Query: 548 RWDDANEVRLLMKSNNI 564
              DA+ V   +   N+
Sbjct: 463 SLKDAHRVFEKISKQNV 479


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 175/445 (39%), Positives = 267/445 (60%), Gaps = 44/445 (9%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N ++ GY +  + +EAR+LFD +P             +++VSWNSM+  Y + G++    
Sbjct: 31  NAMVAGYAKNRQFDEARRLFDAMPA------------KDLVSWNSMLTGYTRNGEMRLGL 78

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
           + FE+M ERD  SWN M+ G++ V D+  +   F K+P+P+T++W  M+ G+A+ G +  
Sbjct: 79  QFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAE 138

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE---------------- 326
           A   F +MP +N+V+WN+MIA    N   + AI LF++M  +                  
Sbjct: 139 ARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKL 198

Query: 327 --------------KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALI 371
                         KPD+ TF+  LS  + +  L +G Q+HQ+V K+    D+ ++NALI
Sbjct: 199 DEARQLLNQMPYRNKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALI 258

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
           TMYA+CG+I  A ++F+++    +VVSWN++I   A +G   EAL+LF  M    V P  
Sbjct: 259 TMYAKCGSISSAELLFKDIDHF-DVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDE 317

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           +TF+ +LSAC+H GL+++G + FK MV  Y IEP  EH+A +VD++GR GRLE+A  L++
Sbjct: 318 VTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVR 377

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
           GM    +  +WGALLGACR+H N+ELA+ AAE L++ EP  ++ YVLL NM A+ GRWD+
Sbjct: 378 GMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDE 437

Query: 552 ANEVRLLMKSNNIKKPTGYSWVDFS 576
              VR LMK    +K  G+SW++  
Sbjct: 438 VARVRRLMKEKGAEKQPGWSWIELQ 462



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/449 (31%), Positives = 235/449 (52%), Gaps = 55/449 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR-DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           MI+ Y +  E+AKAR LF+ +P + + V  N M++GY  +R     +EAR LFD MP +D
Sbjct: 1   MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQ---FDEARRLFDAMPAKD 57

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            V+WN++++GY + GEM   L+ F  M  R+VVSWN M+ GF++ GD+ ++ EFF+++P 
Sbjct: 58  LVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPN 117

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            ++ S   ++ G  + G++ EA R+  +   R       V A+N +I  Y Q   V+EA 
Sbjct: 118 PNTVSWVTMLCGFARFGKIAEARRLFDQMPIRN------VVAWNAMIAAYVQNCHVDEAI 171

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            LF ++P            ++N +SW ++I  Y + G +  AR++  QM  R+    +T 
Sbjct: 172 SLFMEMP------------EKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTF 219

Query: 240 ISGY--------------IHVLDMEE--ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
             G               +H L M+   A++LFV          NA+++ YA+ G++  A
Sbjct: 220 ACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVS---------NALITMYAKCGSISSA 270

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              FK +   ++VSWNS+IA    N +   A+KLF +M+VEG  PD  TF  ILS  S +
Sbjct: 271 ELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHV 330

Query: 344 VDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
             +  G+++ + + +   + P       ++ +  R G + EA  +   MK+  N   W A
Sbjct: 331 GLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGA 390

Query: 402 MIGGCASHG------FATEALELFKSMRS 424
           ++G C  HG      FA E L  F+  ++
Sbjct: 391 LLGACRIHGNLELAKFAAEKLLEFEPHKT 419


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 180/437 (41%), Positives = 267/437 (61%), Gaps = 40/437 (9%)

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           +I GY +  + + AR LFDK+P            +R++ SWN M+  Y +  D+ +AR +
Sbjct: 1   MISGYLRNHKFDLARDLFDKMP------------ERDLFSWNVMLTGYVRNRDLKTARAL 48

Query: 225 FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA- 283
           FE+M ERD  SWN M+SGY     ++EA  +F KMP  + ++WN +++ Y Q G +E A 
Sbjct: 49  FERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAK 108

Query: 284 -------------------------LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
                                     + F  MPQ++ +SW++MIAG   N   E A+  F
Sbjct: 109 RLFESKMDWTLVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFF 168

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARC 377
           ++MQ + E+ +R +F+  LS  S I  L LG Q+H ++V         + NAL+ MY +C
Sbjct: 169 VEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKC 228

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G+I EAR  F+E+ L K+VVSWN MI G A HGF  EAL +F+ M++  + P   T +SV
Sbjct: 229 GSIDEARDAFQEI-LEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSV 287

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           L+AC+HAGLV++G ++F SM  +YGI  ++ H+  +VD++GR G+LE+A +L+K MPFEP
Sbjct: 288 LAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEP 347

Query: 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
           D A WGALLGA R+H N EL + AA+ + ++EP NS  Y+LL  +YA  GRW DA ++RL
Sbjct: 348 DAATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRL 407

Query: 558 LMKSNNIKKPTGYSWVD 574
            M++  +KK  GYSW++
Sbjct: 408 EMRNKGVKKVPGYSWLE 424



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 129/427 (30%), Positives = 207/427 (48%), Gaps = 53/427 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGY++  +   AR LFD+MP+RD+ SWNVM++GY+ +R    L+ AR LF+ MPERD 
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRD---LKTARALFERMPERDI 57

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIE-------- 112
           V+WN ++SGYA+ G ++EA  +F  MP +N +SWN +++ ++QNG + +A          
Sbjct: 58  VSWNAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDW 117

Query: 113 ------------------FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
                              FD MP RDS S SA+++G  QNG  +EA    V+    C  
Sbjct: 118 TLVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDC-- 175

Query: 155 GEDLVR-AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
            E L R ++   +        +E  R+L  ++            ++      N+++  Y 
Sbjct: 176 -ERLNRSSFTCALSTCSNIAALELGRQLHCRLV--------KAGYQTGWYVGNALLAMYC 226

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNA 269
           K G +  AR+ F+++LE+D  SWNTMI GY      EEA  +F  M      PD  T  +
Sbjct: 227 KCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVS 286

Query: 270 MVSGYAQIGNLELALDFFKRMPQK-----NLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
           +++  +  G ++   ++F  M +       LV +  M+         E A  L   M  E
Sbjct: 287 VLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFE 346

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEAR 384
              PD  T+ ++L  S    +  LG +  Q++ +    +  +   L  +YA  G   +A 
Sbjct: 347 ---PDAATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAG 403

Query: 385 IIFEEMK 391
            +  EM+
Sbjct: 404 KMRLEMR 410



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 201/391 (51%), Gaps = 40/391 (10%)

Query: 32  MISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNV 91
           MISGY+ +      + AR LFD MPERD  +WN +++GY +  +++ A  LF  MP R++
Sbjct: 1   MISGYLRNHK---FDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDI 57

Query: 92  VSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSR 151
           VSWNAM+SG+ QNG V  A E F +MP ++  S + L++  +QNG +++A R+     S+
Sbjct: 58  VSWNAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLF---ESK 114

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
            D     + ++N L+ G+     V + R LFD +P            +R+ +SW++MI  
Sbjct: 115 MDW---TLVSWNCLMGGF-----VRKRRNLFDNMP------------QRDSISWSAMIAG 154

Query: 212 YAKAGDVVSAREIFEQM------LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           Y++ G    A   F +M      L R +F+    +S   ++  +E    L  ++      
Sbjct: 155 YSQNGCSEEALHFFVEMQRDCERLNRSSFT--CALSTCSNIAALELGRQLHCRLVKAGYQ 212

Query: 266 T-W---NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           T W   NA+++ Y + G+++ A D F+ + +K++VSWN+MI G   +   E A+ +F  M
Sbjct: 213 TGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELM 272

Query: 322 QVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGA 379
           +  G +PD  T  S+L+  S  G+VD              +   +     ++ +  R G 
Sbjct: 273 KTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQ 332

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           + EA+ + + M    +  +W A++G    HG
Sbjct: 333 LEEAQNLMKNMPFEPDAATWGALLGASRIHG 363


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 193/536 (36%), Positives = 295/536 (55%), Gaps = 61/536 (11%)

Query: 44  FLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQ 103
           FL  AR          C      ++   + G++  A   F S P +   ++N +++G+ +
Sbjct: 8   FLASAR-------SHTCSLSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYAR 60

Query: 104 N-GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
             G +A+A   FDR+P  D+ S                                     Y
Sbjct: 61  ALGRLADARHLFDRIPTPDAVS-------------------------------------Y 83

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           NTL+  +   G  + AR+LF  +PV            R++VSWN+M+   +K+G V  A+
Sbjct: 84  NTLLSCHFASGDADGARRLFASMPV------------RDVVSWNTMVSGLSKSGAVEEAK 131

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP-DTLTWNAMVSGYAQIGNLE 281
            +F  M  R++ SWN M+SG+    DM  A   F   P   D + W AMVSGY  IGN+ 
Sbjct: 132 AVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVV 191

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMS 340
            A+++F+ MP +NLVSWN+++AG   N   + A++LF  M  E   +P+  T SS+L   
Sbjct: 192 KAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGC 251

Query: 341 SGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           S +  L  G QIHQ   K  +  ++ +  +L++MY +CG +  A  +F EM   ++VV+W
Sbjct: 252 SNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHT-RDVVAW 310

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           NAMI G A HG   EA+ LF+ M+   V P +ITF++VL+AC H GL + G + F+ M  
Sbjct: 311 NAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQE 370

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
            YGIEPR++H++ +VD++ R G+LE A+DLI+ MPFEP  + +G LL ACRV+ N+E A+
Sbjct: 371 LYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAE 430

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           +AA  L++ +P+++  YV L N+YA   +WDD + VR  MK N + K  GYSW++ 
Sbjct: 431 LAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEI 486



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 210/420 (50%), Gaps = 38/420 (9%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           ++  V+R ++  A + F   P++   ++N +++GY  +R  G L +AR+LFD +P  D V
Sbjct: 24  VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGY--ARALGRLADARHLFDRIPTPDAV 81

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           ++NT++S +  +G+ + A RLF SMP R+VVSWN M+SG  ++G V  A   F  MP R+
Sbjct: 82  SYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRN 141

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           S S +A+VSG   + ++  A         + D        +  ++ GY   G V +A + 
Sbjct: 142 SVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDA-----VLWTAMVSGYMDIGNVVKAIEY 196

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN--TM 239
           F+ +PV            RN+VSWN+++  Y K      A  +F  M+       N  T+
Sbjct: 197 FEAMPV------------RNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTL 244

Query: 240 ISGYIHVLDM------EEASNLFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQ 292
            S  +   ++      ++     +K+P    LT   ++VS Y + G+L  A   F  M  
Sbjct: 245 SSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHT 304

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHL-- 348
           +++V+WN+MI+G   + D + AI LF +M+ EG +P+  TF ++L+  + +G+ D  +  
Sbjct: 305 RDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRC 364

Query: 349 --GMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
             GMQ        + P V   + ++ +  R G +  A  +   M    +  ++  ++  C
Sbjct: 365 FEGMQ----ELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAAC 420



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 159/356 (44%), Gaps = 85/356 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-D 59
           M+SG  K   + +A+ +F  MP R+ VSWN M+SG+  SR     EE    F   PE+ D
Sbjct: 117 MVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEE---WFRNAPEKGD 173

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            V W  ++SGY   G + +A+  F +MP RN+VSWNA+++G+++N    +A+  F  M  
Sbjct: 174 AVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVR 233

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
             +   +A              + VL+ C              N   +G+G+     +  
Sbjct: 234 EANVQPNA-----------STLSSVLLGCS-------------NLSALGFGK-----QIH 264

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           +   K+P++           RN+    S++  Y K GD+ SA ++F +M  RD  +WN M
Sbjct: 265 QWCMKLPLS-----------RNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAM 313

Query: 240 ISGYIHVLDMEEASNLFVKMP----HPDTLT----------------------------- 266
           ISGY    D +EA NLF +M      P+ +T                             
Sbjct: 314 ISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYG 373

Query: 267 -------WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
                  ++ MV    + G LE A+D  + MP + +  ++ +++A C   K+ E A
Sbjct: 374 IEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFA 429


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 189/520 (36%), Positives = 291/520 (55%), Gaps = 54/520 (10%)

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN-GDVANAIEFFDRMP 118
           C      ++   + G++  A   F S P +   ++N +++G+ +  G +A+A   FDR+P
Sbjct: 66  CSLSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIP 125

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
             D+ S                                     YNTL+  +   G  + A
Sbjct: 126 TPDAVS-------------------------------------YNTLLSCHFASGDADGA 148

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT 238
           R+LF  +PV            R++VSWN+M+   +K+G V  A+ +F  M  R++ SWN 
Sbjct: 149 RRLFASMPV------------RDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNA 196

Query: 239 MISGYIHVLDMEEASNLFVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           M+SG+    DM  A   F   P   D + W AMVSGY  IGN+  A+++F+ MP +NLVS
Sbjct: 197 MVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVS 256

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           WN+++AG   N   + A++LF  M  E   +P+  T SS+L   S +  L  G QIHQ  
Sbjct: 257 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWC 316

Query: 357 TKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            K  +  ++ +  +L++MY +CG +  A  +F EM   ++VV+WNAMI G A HG   EA
Sbjct: 317 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHT-RDVVAWNAMISGYAQHGDGKEA 375

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           + LF+ M+   V P +ITF++VL+AC H GL + G + F+ M   YGIEPR++H++ +VD
Sbjct: 376 INLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVD 435

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++ R G+LE A+DLI+ MPFEP  + +G LL ACRV+ N+E A++AA  L++ +P+++  
Sbjct: 436 LLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGA 495

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           YV L N+YA   +WDD + VR  MK N + K  GYSW++ 
Sbjct: 496 YVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEI 535



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 210/420 (50%), Gaps = 38/420 (9%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           ++  V+R ++  A + F   P++   ++N +++GY  +R  G L +AR+LFD +P  D V
Sbjct: 73  VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGY--ARALGRLADARHLFDRIPTPDAV 130

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           ++NT++S +  +G+ + A RLF SMP R+VVSWN M+SG  ++G V  A   F  MP R+
Sbjct: 131 SYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRN 190

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           S S +A+VSG   + ++  A         + D        +  ++ GY   G V +A + 
Sbjct: 191 SVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDA-----VLWTAMVSGYMDIGNVVKAIEY 245

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN--TM 239
           F+ +PV            RN+VSWN+++  Y K      A  +F  M+       N  T+
Sbjct: 246 FEAMPV------------RNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTL 293

Query: 240 ISGYIHVLDM------EEASNLFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQ 292
            S  +   ++      ++     +K+P    LT   ++VS Y + G+L  A   F  M  
Sbjct: 294 SSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHT 353

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHL-- 348
           +++V+WN+MI+G   + D + AI LF +M+ EG +P+  TF ++L+  + +G+ D  +  
Sbjct: 354 RDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRC 413

Query: 349 --GMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
             GMQ        + P V   + ++ +  R G +  A  +   M    +  ++  ++  C
Sbjct: 414 FEGMQ----ELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAAC 469



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 159/356 (44%), Gaps = 85/356 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-D 59
           M+SG  K   + +A+ +F  MP R+ VSWN M+SG+  SR     EE    F   PE+ D
Sbjct: 166 MVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEE---WFRNAPEKGD 222

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            V W  ++SGY   G + +A+  F +MP RN+VSWNA+++G+++N    +A+  F  M  
Sbjct: 223 AVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVR 282

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
             +   +A              + VL+ C              N   +G+G+     +  
Sbjct: 283 EANVQPNA-----------STLSSVLLGCS-------------NLSALGFGK-----QIH 313

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           +   K+P++           RN+    S++  Y K GD+ SA ++F +M  RD  +WN M
Sbjct: 314 QWCMKLPLS-----------RNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAM 362

Query: 240 ISGYIHVLDMEEASNLFVKMP----HPDTLT----------------------------- 266
           ISGY    D +EA NLF +M      P+ +T                             
Sbjct: 363 ISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYG 422

Query: 267 -------WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
                  ++ MV    + G LE A+D  + MP + +  ++ +++A C   K+ E A
Sbjct: 423 IEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFA 478


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 221/636 (34%), Positives = 337/636 (52%), Gaps = 91/636 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           +I+ ++K  ++  A K+FD +P RD+V+W  MI+G       G  ++A  LF  M E   
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH---GRFKQACNLFQRMEEEGV 308

Query: 58  -----------RDC------------------VTWNT-------VISGYAKTGEMEEALR 81
                      R C                  V W+T       ++S Y K G ME+AL 
Sbjct: 309 QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDS--------ASLSA 127
           +F+ +  RNVVSW AMI+GF Q+G +  A  FF++M      P R +        +S SA
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSA 428

Query: 128 LVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV 187
           L  G      + EA            G +D VR    L+  Y + G +++A ++F+KI  
Sbjct: 429 LKRGQQIQDHIIEAGY----------GSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS- 475

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL 247
                      K+N+V+WN+MI  Y +     +A   F+ +L+      ++  +  ++V 
Sbjct: 476 -----------KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVC 524

Query: 248 DMEEASNL-----FVKMP---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
              ++  L     F+ M      D    NA+VS +   G+L  A + F  MP+++LVSWN
Sbjct: 525 KSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWN 584

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           ++IAG   +   + A   F  MQ  G KPD+ TF+ +L+  +    L  G ++H ++T+ 
Sbjct: 585 TIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEA 644

Query: 360 VIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
               DV +   LI+MY +CG+I +A  +F ++   KNV SW +MI G A HG   EALEL
Sbjct: 645 AFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPK-KNVYSWTSMITGYAQHGRGKEALEL 703

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  M+   V P +ITF+  LSACAHAGL+EEG  HF+SM  E+ IEPR+EH+  +VD+ G
Sbjct: 704 FYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFG 762

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           R G L +A++ I  M  EPD  VWGALLGAC+VH NVELA+ AA+  ++++P ++  +V+
Sbjct: 763 RAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVI 822

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           L N+YA  G W +  ++R +M    + K  G SW++
Sbjct: 823 LSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIE 858



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 145/583 (24%), Positives = 262/583 (44%), Gaps = 118/583 (20%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM- 117
           D   WNT+I+ YAK G    A ++F+ M  ++V SWN ++ G++Q+G    A +  ++M 
Sbjct: 144 DIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203

Query: 118 -------------------------PGRDSASL-------------SALVSGLIQNGELD 139
                                     GR+  +L             +AL++  I+ G++ 
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIG 263

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF----------DKIPV-- 187
           +A +V     +R     DLV  + ++I G  + GR ++A  LF          DK+    
Sbjct: 264 DATKVFDNLPTR-----DLV-TWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVS 317

Query: 188 ---NCDRGEG-----NVRFKRNIVSWNSMIMC-------YAKAGDVVSAREIFEQMLERD 232
               C+  E       V  +   V W++ I         Y K G +  A E+F+ +  R+
Sbjct: 318 LLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRN 377

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW--------------------- 267
             SW  MI+G+     ++EA   F KM      P+ +T+                     
Sbjct: 378 VVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQD 437

Query: 268 --------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
                          A++S YA+ G+L+ A   F+++ ++N+V+WN+MI     ++ Y+ 
Sbjct: 438 HIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDN 497

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALIT 372
           A+  F  +  EG KP+  TF+SIL++      L LG  +H ++ K  +  D+ ++NAL++
Sbjct: 498 ALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVS 557

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           M+  CG ++ A+ +F +M   +++VSWN +I G   HG    A + FK M+   + P  I
Sbjct: 558 MFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKI 616

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TF  +L+ACA    + EGR+   +++ E   +  +     L+ +  + G +EDA  +   
Sbjct: 617 TFTGLLNACASPEALTEGRR-LHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHK 675

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           +P + +   W +++     H      + A E   +++ E   P
Sbjct: 676 LP-KKNVYSWTSMITGYAQHGR---GKEALELFYQMQQEGVKP 714



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 150/643 (23%), Positives = 265/643 (41%), Gaps = 157/643 (24%)

Query: 58  RDCVTWNTVISGYAKTGEMEEAL-----------------------------------RL 82
           +D    N V++  +K G+  EA+                                   R+
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 83  FNSMPAR----NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGEL 138
           +N +       ++  WN +I+ + + G+  +A + FD M  +D  S + L+ G +Q+G  
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 139 DEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           +EA ++   +V+   + D      R + +++        V++ R+L++ I          
Sbjct: 193 EEAFKLHEQMVQDSVKPDK-----RTFVSMLNACADARNVDKGRELYNLIL--------K 239

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
             +  ++    ++I  + K GD+  A ++F+ +  RD  +W +MI+G       ++A NL
Sbjct: 240 AGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNL 299

Query: 256 FVKMP-------------------HPDTLT-------------WN-------AMVSGYAQ 276
           F +M                    HP+ L              W+       A++S Y +
Sbjct: 300 FQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTK 359

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            G++E AL+ F  +  +N+VSW +MIAG   +   + A   F +M   G +P+R TF SI
Sbjct: 360 CGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSI 419

Query: 337 LSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           L   S    L  G QI   + +     D  +  AL++MYA+CG++ +A  +FE++   +N
Sbjct: 420 LGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQN 478

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR-QHF 454
           VV+WNAMI     H     AL  F+++    + P   TF S+L+ C  +  +E G+  HF
Sbjct: 479 VVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHF 538

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP-------------------- 494
             ++ + G+E  +    +LV +    G L  A +L   MP                    
Sbjct: 539 --LIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKN 596

Query: 495 --------------FEPDKAVWGALLGAC----------RVHNNVELAQVAAEALMKVEP 530
                          +PDK  +  LL AC          R+H  +  A    + L+    
Sbjct: 597 QVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTG- 655

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
                   L +MY   G  +DA++V   +   N+     YSW 
Sbjct: 656 --------LISMYTKCGSIEDAHQVFHKLPKKNV-----YSWT 685



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 200/437 (45%), Gaps = 51/437 (11%)

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFK-RNIVSWNSMIMCYAKAGDVVSAREIFEQM----- 228
           +E  R L       C +G   V    ++    N+++   +KAG    A ++ E++     
Sbjct: 47  IETLRMLTTSFSGRCPKGRCVVFADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHI 106

Query: 229 -LERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELA 283
            + R T+S   ++   I   ++ +   ++  +      PD   WN +++ YA+ GN   A
Sbjct: 107 QIYRQTYS--ALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISA 164

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F  M +K++ SWN ++ G   +  YE A KL  QM  +  KPD+ TF S+L+  +  
Sbjct: 165 KQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADA 224

Query: 344 VDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
            ++  G +++ ++ K     D+ +  ALI M+ +CG I +A  +F+ +   +++V+W +M
Sbjct: 225 RNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLP-TRDLVTWTSM 283

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I G A HG   +A  LF+ M    V P  + F+S+L AC H   +E+G++    M  E G
Sbjct: 284 ITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARM-KEVG 342

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAM---DLIKGMP------------------------- 494
            +  I    +++ +  + G +EDA+   DL+KG                           
Sbjct: 343 WDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFN 402

Query: 495 ------FEPDKAVWGALLGACRVHNNVELAQVAAEALMKV-EPENSTPYVLLYNMYADVG 547
                  EP++  + ++LGAC   + ++  Q   + +++     +      L +MYA  G
Sbjct: 403 KMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCG 462

Query: 548 RWDDANEVRLLMKSNNI 564
              DA+ V   +   N+
Sbjct: 463 SLKDAHRVFEKISKQNV 479


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 193/536 (36%), Positives = 295/536 (55%), Gaps = 61/536 (11%)

Query: 44  FLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQ 103
           FL  AR          C      ++   + G++  A   F S P +   ++N +++G+ +
Sbjct: 8   FLASAR-------SHTCSLSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYAR 60

Query: 104 N-GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
             G +A+A   FDR+P  D+ S                                     Y
Sbjct: 61  ALGRLADARHLFDRIPTPDAVS-------------------------------------Y 83

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           NTL+  +   G  + AR+LF  +PV            R++VSWN+M+   +K+G V  A+
Sbjct: 84  NTLLSCHFASGDADGARRLFASMPV------------RDVVSWNTMVSGLSKSGAVEEAK 131

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP-DTLTWNAMVSGYAQIGNLE 281
            +F  M  R++ SWN M+SG+    DM  A   F   P   D + W AMVSGY  IGN+ 
Sbjct: 132 AVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVV 191

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMS 340
            A+++F+ MP +NLVSWN+++AG   N   + A++LF  M  E   +P+  T SS+L   
Sbjct: 192 KAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGC 251

Query: 341 SGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           S +  L  G QIHQ   K  +  ++ +  +L++MY +CG +  A  +F EM   ++VV+W
Sbjct: 252 SNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHT-RDVVAW 310

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           NAMI G A HG   EA+ LF+ M+   V P +ITF++VL+AC H GL + G + F+ M  
Sbjct: 311 NAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQE 370

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
            YGIEPR++H++ +VD++ R G+LE A+DLI+ MPFEP  + +G LL ACRV+ N+E A+
Sbjct: 371 LYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAE 430

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           +AA  L++ +P+++  YV L N+YA   +WDD + VR  MK N + K  GYSW++ 
Sbjct: 431 LAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEI 486



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 210/420 (50%), Gaps = 38/420 (9%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           ++  V+R ++  A + F   P++   ++N +++GY  +R  G L +AR+LFD +P  D V
Sbjct: 24  VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGY--ARALGRLADARHLFDRIPTPDAV 81

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           ++NT++S +  +G+ + A RLF SMP R+VVSWN M+SG  ++G V  A   F  MP R+
Sbjct: 82  SYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRN 141

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           S S +A+VSG   + ++  A         + D        +  ++ GY   G V +A + 
Sbjct: 142 SVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDA-----VLWTAMVSGYMDIGNVVKAIEY 196

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN--TM 239
           F+ +PV            RN+VSWN+++  Y K      A  +F  M+       N  T+
Sbjct: 197 FEAMPV------------RNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTL 244

Query: 240 ISGYIHVLDM------EEASNLFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQ 292
            S  +   ++      ++     +K+P    LT   ++VS Y + G+L  A   F  M  
Sbjct: 245 SSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHT 304

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHL-- 348
           +++V+WN+MI+G   + D + AI LF +M+ EG +P+  TF ++L+  + +G+ D  +  
Sbjct: 305 RDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRC 364

Query: 349 --GMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
             GMQ        + P V   + ++ +  R G +  A  +   M    +  ++  ++  C
Sbjct: 365 FEGMQ----ELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAAC 420



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 159/356 (44%), Gaps = 85/356 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-D 59
           M+SG  K   + +A+ +F  MP R+ VSWN M+SG+  SR     EE    F   PE+ D
Sbjct: 117 MVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEE---WFRNAPEKGD 173

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            V W  ++SGY   G + +A+  F +MP RN+VSWNA+++G+++N    +A+  F  M  
Sbjct: 174 AVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVR 233

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
             +   +A              + VL+ C              N   +G+G+     +  
Sbjct: 234 EANVQPNA-----------STLSSVLLGCS-------------NLSALGFGK-----QIH 264

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           +   K+P++           RN+    S++  Y K GD+ SA ++F +M  RD  +WN M
Sbjct: 265 QWCMKLPLS-----------RNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAM 313

Query: 240 ISGYIHVLDMEEASNLFVKMP----HPDTLT----------------------------- 266
           ISGY    D +EA NLF +M      P+ +T                             
Sbjct: 314 ISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYG 373

Query: 267 -------WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
                  ++ MV    + G LE A+D  + MP + +  ++ +++A C   K+ E A
Sbjct: 374 IEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFA 429


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 209/585 (35%), Positives = 323/585 (55%), Gaps = 70/585 (11%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G ++ AR LFD M ER+  +WN++I  + K+G +++A+ +F  MP  +  SWN+MISGF 
Sbjct: 68  GCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFE 127

Query: 103 QNGDVANAIEFFDRMPGR----DSASLSALVSGL--IQNGELDEAARVLVKCGSRCDGGE 156
           Q+G    A+ +F +M G     +  S  + +S    +Q+ +L      LV    R +   
Sbjct: 128 QHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLV---YRSNYLS 184

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D+    + L+  Y + GRVE A+ +FD++ V            R+ VSWNS+I CY + G
Sbjct: 185 DVYMG-SALVDMYSKCGRVEYAQSVFDEMTV------------RSRVSWNSLITCYEQNG 231

Query: 217 DVVSAREIFEQML----ERDTFSWNTMISG-----------YIH---------------- 245
            V  A +IF +M+    E D  +  +++S             IH                
Sbjct: 232 PVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILG 291

Query: 246 --VLDM-------EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
             +LDM        EA  +F  MP    ++  +MVSGYA+   +++A   F  M  K+++
Sbjct: 292 NALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVI 351

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           +WN++IAGC  N + E A+ LF  ++ E   P  +TF ++L+  + + DL LG Q H  V
Sbjct: 352 TWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHV 411

Query: 357 TKTVI-------PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            K           DV + N+LI MY +CG++     +F+ M L K+ VSWNAMI G A +
Sbjct: 412 LKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHM-LEKDCVSWNAMIVGYAQN 470

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           GF  +ALE+F  M      P ++T I VL AC+HAGL++EGR +F+SM  ++G+ P  +H
Sbjct: 471 GFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDH 530

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           +  +VD++GR G LE+A +LI+ M  +PD  VWG+LL AC+VH N++L +   + L++V+
Sbjct: 531 YTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVD 590

Query: 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           PENS PYVLL NMYA+   W +   VR LM+   + K  G SW++
Sbjct: 591 PENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIE 635



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 205/502 (40%), Gaps = 112/502 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGFL-- 45
           +I  + K   +  A  +F++MPQ D  SWN MISG             +    G GFL  
Sbjct: 91  IICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVN 150

Query: 46  ---------------------------EEARYLFDIMPERDCVTWNTVISGYAKTGEMEE 78
                                        + YL D+         + ++  Y+K G +E 
Sbjct: 151 EYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDV------YMGSALVDMYSKCGRVEY 204

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQ 134
           A  +F+ M  R+ VSWN++I+ + QNG V  A++ F  M       D  +L+++VS    
Sbjct: 205 AQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACAT 264

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
              + E  ++  +   +CD   + +   N L+  Y +  R+ EAR +FD +P+       
Sbjct: 265 ISAIKEGQQIHARV-VKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPI------- 316

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASN 254
                R++VS  SM+  YAKA  V  AR +F  M+ +D  +WN +I+G     + EEA  
Sbjct: 317 -----RSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALI 371

Query: 255 LFVKMPH---------------------------------------------PDTLTWNA 269
           LF  +                                                D    N+
Sbjct: 372 LFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNS 431

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           ++  Y + G++E     F+ M +K+ VSWN+MI G   N     A+++F +M   GE PD
Sbjct: 432 LIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPD 491

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIF 387
             T   +L   S    L  G    + +T    ++P       ++ +  R G + EA+ + 
Sbjct: 492 HVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLI 551

Query: 388 EEMKLLKNVVSWNAMIGGCASH 409
           EEM +  + + W +++  C  H
Sbjct: 552 EEMSMQPDAIVWGSLLAACKVH 573



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 153/290 (52%), Gaps = 33/290 (11%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N +I  Y K G V  AR++F++MLER+ FS                              
Sbjct: 58  NRLIDVYGKCGCVDVARKLFDRMLERNIFS------------------------------ 87

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
            WN+++  + + G L+ A+  F++MPQ +  SWNSMI+G E +  ++ A+  F QM   G
Sbjct: 88  -WNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHG 146

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEAR 384
              + ++F S LS  +G+ DL LG QIH +V ++  + DV + +AL+ MY++CG +  A+
Sbjct: 147 FLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQ 206

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F+EM  +++ VSWN++I     +G   EAL++F  M    V P  +T  SV+SACA  
Sbjct: 207 SVFDEMT-VRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATI 265

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
             ++EG+Q    +V        +    +L+D+  +  R+ +A  +   MP
Sbjct: 266 SAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMP 315


>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 180/411 (43%), Positives = 264/411 (64%), Gaps = 16/411 (3%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N+LI  Y   GR+ +AR +F+   ++            ++V+WNSMI  Y K G++ +AR
Sbjct: 49  NSLIHMYSVCGRIGDARAMFEVCSIS------------DLVTWNSMIDGYVKNGEIGAAR 96

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
           E+FE+M ERD FSWN+MI+GY+   DM  A +LF KMP  D ++WN M+ GYAQ+ N+E+
Sbjct: 97  ELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEI 156

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A + F  MP +N+VSWN M+A     KDY+  +++F +M  E   P+  T  S+L+  + 
Sbjct: 157 ACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGE-TMPNEATLVSVLTACAH 215

Query: 343 IVDLHLGMQIHQMV--TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
           +  L  G  IH  +   + + PDV ++ AL+TMYA+CGA+  AR +F++M   ++VVSWN
Sbjct: 216 LGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSN-RSVVSWN 274

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           +MI G   HG A +ALE+F  M     +P   TFI VLSACAH+G++ EG  +F  M   
Sbjct: 275 SMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRA 334

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           Y IEP++EH+  +VD++GR G ++D  +LI+ MP E   A+WGALL ACR H+N ELA++
Sbjct: 335 YKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEI 394

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
            A+ L+++EP +  PY+LL N+YA  G+WDD   VR +MK   + K TG S
Sbjct: 395 VAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGLS 445



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 168/327 (51%), Gaps = 29/327 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI GYVK  E+  AR+LF+EMP+RD+ SWN MI+GY+   G+G +  A  LF+ MP RD 
Sbjct: 82  MIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYV---GNGDMTAAEDLFNKMPFRDI 138

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN +I GYA+   ME A  LFN MP RNVVSWN M++ +++  D    +  FD+M G 
Sbjct: 139 VSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGE 198

Query: 121 ---DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
              + A+L ++++     G LD    +     +      D++ +   L+  Y + G ++ 
Sbjct: 199 TMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLS-TALLTMYAKCGAMDL 257

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DT 233
           AR +FDK+              R++VSWNSMIM Y   G    A E+F  M +R    + 
Sbjct: 258 ARDVFDKMS------------NRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPND 305

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFK 288
            ++  ++S   H   + E    F  M       P    +  MV    + G ++   +  +
Sbjct: 306 ATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIR 365

Query: 289 RMPQKNLVS-WNSMIAGCETNKDYEGA 314
           +MP +   + W ++++ C T+ + E A
Sbjct: 366 KMPMEGGTALWGALLSACRTHSNSELA 392



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 190/383 (49%), Gaps = 29/383 (7%)

Query: 37  ISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNA 96
           I S G G    AR L     E D    N++I  Y+  G + +A  +F      ++V+WN+
Sbjct: 23  IGSIGDGEKIHARIL-KFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNS 81

Query: 97  MISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
           MI G+++NG++  A E F+ MP RD  S +++++G + NG++  A  +  K   R     
Sbjct: 82  MIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFR----- 136

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D+V ++N +I GY Q   +E A +LF+ +P             RN+VSWN M+  Y +  
Sbjct: 137 DIV-SWNCMIDGYAQVQNMEIACELFNWMPY------------RNVVSWNIMLALYVRIK 183

Query: 217 DVVSAREIFEQMLERDTFSWNTMIS-----GYIHVLDMEEASNLFVK---MPHPDTLTWN 268
           D      +F++M+     +  T++S      ++  LD  +  + ++K   +  PD L   
Sbjct: 184 DYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLST 243

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           A+++ YA+ G ++LA D F +M  +++VSWNSMI G   +   + A+++F+ M+  G  P
Sbjct: 244 ALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMP 303

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARII 386
           +  TF  +LS  +    +  G     ++ +   + P V     ++ +  R G + +   +
Sbjct: 304 NDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEEL 363

Query: 387 FEEMKLLKNVVSWNAMIGGCASH 409
             +M +      W A++  C +H
Sbjct: 364 IRKMPMEGGTALWGALLSACRTH 386



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 144/273 (52%), Gaps = 19/273 (6%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGY 70
           +  AR +F+     D+V+WN MI GY+ +   G +  AR LF+ MPERD  +WN++I+GY
Sbjct: 61  IGDARAMFEVCSISDLVTWNSMIDGYVKN---GEIGAARELFEEMPERDLFSWNSMIAGY 117

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
              G+M  A  LFN MP R++VSWN MI G+ Q  ++  A E F+ MP R+  S + +++
Sbjct: 118 VGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLA 177

Query: 131 GLIQNGELDEAARVLVK-CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
             ++  + DE  R+  K  G        LV    +++      GR++  + +   I    
Sbjct: 178 LYVRIKDYDECLRMFDKMMGETMPNEATLV----SVLTACAHLGRLDRGKWIHSYI---- 229

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
              + N   + +++   +++  YAK G +  AR++F++M  R   SWN+MI GY      
Sbjct: 230 ---KNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQA 286

Query: 250 EEASNLFVKM----PHPDTLTWNAMVSGYAQIG 278
           ++A  +F+ M    P P+  T+  ++S  A  G
Sbjct: 287 DKALEMFLDMEKRGPMPNDATFICVLSACAHSG 319


>gi|325260825|gb|ADZ04643.1| hypothetical protein [Oryza punctata]
          Length = 674

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 205/635 (32%), Positives = 343/635 (54%), Gaps = 74/635 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y +R  +  A+ LFD+MP RDV+SW  +++ Y      G L  AR +FD MP R+ 
Sbjct: 44  LLTAYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADG---GDLASARLVFDDMPRRNA 100

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW-------------------------- 94
            +WN ++S Y +      A  LF  MPA+N VS+                          
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAGMLREAELVYEEMPQQ 160

Query: 95  -------NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
                  NA+++G+L+ G++A A+  F+ M  RD  S SA+V GL ++G + EA RV   
Sbjct: 161 WRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDA 220

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF-----DKIPVNC-------DRGEG- 194
              R       V ++ ++I GY +RG   +   LF     + + VN        D   G 
Sbjct: 221 MPERS------VVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVVLDACAGA 274

Query: 195 --------------NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
                         ++ F+ +I   +S+I+ Y++ G +  A+  F  M ++D  SWN++I
Sbjct: 275 SLAREGIQIHNLIISMGFELDIFLGDSVIIMYSRFGWMADAQRAFNCMQQKDIVSWNSLI 334

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    +EEA  LF  MP  D ++W +MV G+A  G +  +++ F++MP K++V+W +
Sbjct: 335 TGYVQHDMVEEAHVLFKLMPQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDVVAWTA 394

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKT 359
           +I+   TN DY  A++ F +M  EG KP+  TFS +LS  + +  L+ G Q H   +   
Sbjct: 395 IISSFITNGDYLSAVRWFCRMSQEGCKPNTITFSCLLSALASLAMLNQGRQAHAYSINMG 454

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
            + D  ++ +LI+MYA+CG + EA  +F  +    ++++ N+MI     HGFA +AL+LF
Sbjct: 455 WVFDSAVHTSLISMYAKCGRLAEAHHVFSSISN-PSLIAINSMITAFVQHGFAEDALKLF 513

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M++    P ++TF+ +L+ CA AG V++G  +F+SM   YG+EP  EH+  +VD++GR
Sbjct: 514 TKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGR 573

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G L +A+++I  MP       W ALL A  +H+N+  A++AA+ L++ +P ++T Y +L
Sbjct: 574 AGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYDATAYTVL 633

Query: 540 YNMYADVG-RWDDANEVRLLMKSNNIKKPTGYSWV 573
             M++  G  +++  +V  L  SN   K  GYS +
Sbjct: 634 SKMFSSAGMEYEEMQKVVQL--SNMASKRPGYSLI 666



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 188/395 (47%), Gaps = 53/395 (13%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +++ Y + G + +A  LF+ MP+R+V+SW A+++ +   GD+A+A   FD MP R++ 
Sbjct: 42  NALLTAYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S +AL+S  ++      A  +  K  ++         +Y  +I G  + G + EA  +++
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAKN------AVSYGAIISGLAKAGMLREAELVYE 155

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           ++P             R+ V  N+++  Y + G++  A  +FE M  RD  SW+ M+ G 
Sbjct: 156 EMPQQW----------RDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGL 205

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                + EA  +F  MP    ++W +M+ GY + G           M    L+       
Sbjct: 206 CKHGSVSEARRVFDAMPERSVVSWTSMIRGYVKRG-----------MCSDGLL------- 247

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP- 362
                        LF+ M+ EG + +  T S +L   +G      G+QIH ++       
Sbjct: 248 -------------LFLNMRREGVQVNATTLSVVLDACAGASLAREGIQIHNLIISMGFEL 294

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           D+ + +++I MY+R G + +A+  F  M+  K++VSWN++I G   H    EA  LFK M
Sbjct: 295 DIFLGDSVIIMYSRFGWMADAQRAFNCMQ-QKDIVSWNSLITGYVQHDMVEEAHVLFKLM 353

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
                    +++ S++   A+ G + E  + F+ M
Sbjct: 354 PQKDA----VSWTSMVVGFANRGWMRESVELFEQM 384



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 127/329 (38%), Gaps = 66/329 (20%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           P+    NA+++ Y + G L  A   F +MP ++++SW +++       D   A  +F  M
Sbjct: 36  PNRAHLNALLTAYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDM 95

Query: 322 QVEGEKPDRHTFSSIL--------------------SMSSGIVDLHLGMQIHQMVTKTVI 361
                 P  +   S+                     ++S G +   L         + V 
Sbjct: 96  P-RRNAPSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAGMLREAELVY 154

Query: 362 PDVPI-------NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
            ++P        +NAL+  Y R G +  A  +FE M  +++V+SW+AM+ G   HG  +E
Sbjct: 155 EEMPQQWRDPVGSNALMAGYLRVGELAMALRVFEGMT-VRDVISWSAMVDGLCKHGSVSE 213

Query: 415 A-------------------------------LELFKSMRSFKVLPTYITFISVLSACAH 443
           A                               L LF +MR   V     T   VL ACA 
Sbjct: 214 ARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVVLDACAG 273

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           A L  EG Q   +++   G E  I    S++ +  R G + DA      M  + D   W 
Sbjct: 274 ASLAREGIQ-IHNLIISMGFELDIFLGDSVIIMYSRFGWMADAQRAFNCMQ-QKDIVSWN 331

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPEN 532
           +L+     H+ VE A V    L K+ P+ 
Sbjct: 332 SLITGYVQHDMVEEAHV----LFKLMPQK 356


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 188/484 (38%), Positives = 291/484 (60%), Gaps = 23/484 (4%)

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN-GELDEAARVLVKCGSRCD 153
            A ++  +++GD+A A E F   P + +A+ + L++G  +  G L +A  +  +  +   
Sbjct: 21  TAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPT--- 77

Query: 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
              D+V +YNTL++ +   G  + AR+LF  +PV            R++ SWN+M+   +
Sbjct: 78  --PDVV-SYNTLLLCHFASGDADGARRLFASMPV------------RDVASWNTMVSGLS 122

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP-DTLTWNAMVS 272
           K+G V  A+ +F  M  R++ SWN M+SG+    DM  A   F   P   D + W AMVS
Sbjct: 123 KSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVS 182

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRH 331
           GY  IGN+  A+ +F+ MP +NLVSWN+++AG   N   + A++LF  M  E   +P+  
Sbjct: 183 GYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNAS 242

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEM 390
           T SS+L   S +  L  G QIHQ   K ++  ++ +  +L++MY +CG +  A I+F EM
Sbjct: 243 TLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEM 302

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
              ++VV+WNAMI G A HG   EA+ LF+ M+   V P +ITF+ VL+AC H GL + G
Sbjct: 303 HT-RDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFG 361

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
            Q F+ M   YGIEPR++H++ +VD++ R G+LE A+D I+ MPFEP  + +G LL ACR
Sbjct: 362 IQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACR 421

Query: 511 VHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGY 570
           V+ N+E A++AA  L++ +P+++  YV L N+YA   +WDD + VR  MK N + K  GY
Sbjct: 422 VYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGY 481

Query: 571 SWVD 574
           SW++
Sbjct: 482 SWIE 485



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 187/385 (48%), Gaps = 80/385 (20%)

Query: 1   MISGYVKRR-EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           +++GY +    +A AR LFD +P  DVVS+N ++  + +S   G  + AR LF  MP RD
Sbjct: 54  LLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFAS---GDADGARRLFASMPVRD 110

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
             +WNT++SG +K+G +EEA  +F +MP RN VSWNAM+SGF  +GD++ A E+F   P 
Sbjct: 111 VASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPE 170

Query: 120 RDSASL-SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
           ++ A L +A+VSG +  G + +A +       R     +LV ++N ++ GY +    ++A
Sbjct: 171 KEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVR-----NLV-SWNAVVAGYVKNSHADDA 224

Query: 179 RKLF----------------DKIPVNCDR----GEG--------NVRFKRNIVSWNSMIM 210
            +LF                  + + C      G G         +   RN+    S++ 
Sbjct: 225 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVS 284

Query: 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLT 266
            Y K GD+ SA  +F +M  RD  +WN MISGY    D +EA NLF +M      P+ +T
Sbjct: 285 MYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWIT 344

Query: 267 ------------------------------------WNAMVSGYAQIGNLELALDFFKRM 290
                                               ++ MV    + G LE A+DF + M
Sbjct: 345 FVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSM 404

Query: 291 P-QKNLVSWNSMIAGCETNKDYEGA 314
           P + +  ++ +++A C   K+ E A
Sbjct: 405 PFEPHPSAYGTLLAACRVYKNLEFA 429



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 186/409 (45%), Gaps = 64/409 (15%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKT-GEMEEALRLFNSMPARNVVSWNAMISGF 101
           G L  A   F   P +   T+N +++GYA+  G + +A  LF+ +P  +VVS+N ++   
Sbjct: 31  GDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCH 90

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
             +GD   A   F  MP RD AS + +VSGL ++G ++EA  V +    R         +
Sbjct: 91  FASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNS------VS 144

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +N ++ G+   G +  A + F   P            K + V W +M+  Y   G+VV A
Sbjct: 145 WNAMVSGFACSGDMSTAEEWFRNAPE-----------KEDAVLWTAMVSGYMDIGNVVKA 193

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM-------PHPDTLT-------- 266
            + FE M  R+  SWN +++GY+     ++A  LF  M       P+  TL+        
Sbjct: 194 IKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSN 253

Query: 267 ------------W-------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
                       W              ++VS Y + G+L  A   F  M  +++V+WN+M
Sbjct: 254 LSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAM 313

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHLGMQIHQMVTKT 359
           I+G   + D + AI LF +M+ EG +P+  TF  +L+  + +G+ D   G+Q  + + + 
Sbjct: 314 ISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCD--FGIQCFEGMQEL 371

Query: 360 --VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
             + P V   + ++ +  R G +  A      M    +  ++  ++  C
Sbjct: 372 YGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAAC 420


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 221/632 (34%), Positives = 327/632 (51%), Gaps = 82/632 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y +   +  AR+LFD+MP +D V WNVM++G++     G    A  +F+ M  R+C
Sbjct: 13  LIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKC---GEPNSAVKVFEDM--RNC 67

Query: 61  VT-----------------------------------------WNTVISGYAKTGEMEEA 79
            T                                          N +++ Y+K G++ +A
Sbjct: 68  QTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDA 127

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQN 135
           L+LFN+MP  NVV+WN MI+GF+QNG +  A   F  M       DS + ++ +  + ++
Sbjct: 128 LKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTES 187

Query: 136 GELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
             L +   +   +++ G   D     V   + LI  Y +   V  A K+F K   N D  
Sbjct: 188 ASLKQGKEIHGYILRHGIALD-----VFLKSALIDIYFKCRDVGMACKIF-KQSTNVD-- 239

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
                    IV   ++I  Y   G    A EIF  +LE         ++  +        
Sbjct: 240 ---------IVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLAT 290

Query: 253 SNLFVKMPHPDTL---------TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
            NL  ++ H + L           +A++  YA+ G L+LA   F+RMP+K+ V WN++I 
Sbjct: 291 LNLGKEL-HANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIIT 349

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-P 362
            C  N   + AI LF QM  EG   D  + S+ LS  + +  LH G  IH  + K     
Sbjct: 350 NCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDS 409

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           +V   +ALI MY +CG +  AR +F+ M+  KN VSWN++I    SHG    +L LF  M
Sbjct: 410 EVFAESALIDMYGKCGNLSVARCVFDMMRE-KNEVSWNSIIAAYGSHGHLEVSLALFHKM 468

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
               + P ++TF+++LSAC HAG V++G Q+F+ M  EYGI  R+EH+A +VD+ GR GR
Sbjct: 469 LEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGR 528

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           L +A + IK MPF PD  VWG LLGACRVH NVELA+VA+  L+ ++PENS  YVLL N+
Sbjct: 529 LNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNV 588

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +AD G+W    ++R LMK   ++K  GYSW++
Sbjct: 589 HADAGQWGSVRKIRSLMKKRGVQKVPGYSWIE 620



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 121/494 (24%), Positives = 243/494 (49%), Gaps = 38/494 (7%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           +++I  YA+ G +E+A RLF+ MP ++ V WN M++GF++ G+  +A++ F+ M    + 
Sbjct: 11  SSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTK 70

Query: 124 SLS---ALVSGLIQNGELDEAARVL----VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
             S   A V  +  +  L E    L    + CG   D    LV   N L+  Y + G++ 
Sbjct: 71  PNSITFASVLSICASEALSEFGNQLHGLVISCGFHFD---PLVA--NALVAMYSKFGQLS 125

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----D 232
           +A KLF+ +P              N+V+WN MI  + + G +  A  +F +M+      D
Sbjct: 126 DALKLFNTMP------------DTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPD 173

Query: 233 TFSWNTMISGYIHVLDMEEASNLF-VKMPHP---DTLTWNAMVSGYAQIGNLELALDFFK 288
           + ++ + +        +++   +    + H    D    +A++  Y +  ++ +A   FK
Sbjct: 174 SITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFK 233

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
           +    ++V   ++I+G   N     A+++F  +  E   P+  T +S+L   +G+  L+L
Sbjct: 234 QSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNL 293

Query: 349 GMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G ++H  + K  + +   + +A++ MYA+CG +  A  IF  M   K+ V WNA+I  C+
Sbjct: 294 GKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMP-EKDAVCWNAIITNCS 352

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
            +G   EA++LF+ M    +    ++  + LSACA+   +  G+     M+ +   +  +
Sbjct: 353 QNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMI-KGAFDSEV 411

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
              ++L+D+ G+ G L  A  +   M  E ++  W +++ A   H ++E++      +++
Sbjct: 412 FAESALIDMYGKCGNLSVARCVFDMMR-EKNEVSWNSIIAAYGSHGHLEVSLALFHKMLE 470

Query: 528 --VEPENSTPYVLL 539
             ++P++ T   +L
Sbjct: 471 DGIQPDHVTFLTIL 484



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 3/215 (1%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D    ++++  YA+ G +E A   F +MP K+ V WN M+ G     +   A+K+F  M+
Sbjct: 6   DEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMR 65

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIV 381
               KP+  TF+S+LS+ +       G Q+H +V        P + NAL+ MY++ G + 
Sbjct: 66  NCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLS 125

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
           +A  +F  M    NVV+WN MI G   +GF  EA  LF  M S  V P  ITF S L + 
Sbjct: 126 DALKLFNTMP-DTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSV 184

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
             +  +++G++     +  +GI   +   ++L+DI
Sbjct: 185 TESASLKQGKE-IHGYILRHGIALDVFLKSALIDI 218


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 215/634 (33%), Positives = 332/634 (52%), Gaps = 78/634 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ER 58
           +I  Y K  +   ARKLFDE+PQ DV++   +I+ Y      G L+ AR +F+  P   R
Sbjct: 54  LIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAY---SALGNLKMAREIFNETPLDMR 110

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARN---------------------------- 90
           D V +N +I+GY+   +   A+ LF +M   N                            
Sbjct: 111 DTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQM 170

Query: 91  ---VVSW---------NAMISGFLQNGD---------VANAIEFFDRMPGRDSASLSALV 129
              VV +         NA++S +++            +A+A + FD MP R+    + L+
Sbjct: 171 HGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLI 230

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           +G ++NG+L  A  +L          E    A+N +I GY   G  E+A  LF K+ +  
Sbjct: 231 TGYVRNGDLTGAREILDTMT------EQPGIAWNAMISGYLHHGLFEDALTLFRKMRL-- 282

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML------ERDTF--SWNTMIS 241
                 +  + +  ++ S+I   A  G  +  +++   +L      +RD      NT+I+
Sbjct: 283 ------LGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLIT 336

Query: 242 GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
            Y     ++ A  +F +MP  D +TWN ++SGY   G +E A  FF +MP+KNL++W  M
Sbjct: 337 LYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVM 396

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTV 360
           I+G   N   E A+KLF QM+++G +P+ + F+  ++  S +  L  G Q+H Q+V    
Sbjct: 397 ISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGH 456

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
              + + NA+ITMYARCG +  AR +F  M  + + VSWN+MI     HG   +A+EL++
Sbjct: 457 DSTLSVGNAMITMYARCGIVEAARTMFLTMPFV-DPVSWNSMIAALGQHGHGVKAIELYE 515

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M    +LP   TF++VLSAC+HAGLVEEG ++F SM+  YGI P  +H+A ++D+  R 
Sbjct: 516 QMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRA 575

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G+  DA ++I  MPFE    +W ALL  CR H N++L   AAE L K+ P++   YVLL 
Sbjct: 576 GKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLS 635

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           NMYA +GRW+D    R LM+   +KK    SW +
Sbjct: 636 NMYASLGRWNDVARTRKLMRDRGVKKEPACSWTE 669



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 122/496 (24%), Positives = 198/496 (39%), Gaps = 133/496 (26%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N LI  Y +      ARKLFD+IP            + ++++  ++I  Y+  G++  AR
Sbjct: 52  NRLIDIYWKSSDFVYARKLFDEIP------------QPDVIARTTLITAYSALGNLKMAR 99

Query: 223 EIFEQ--MLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTW--------- 267
           EIF +  +  RDT  +N MI+GY H+ D   A  LF  M      PD  T+         
Sbjct: 100 EIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTL 159

Query: 268 ---------------------------NAMVSGYAQIG---------NLELALDFFKRMP 291
                                      NA++S Y +            +  A   F  MP
Sbjct: 160 IFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMP 219

Query: 292 QKNLVSWNSMIAGCETNKD-------------------------------YEGAIKLFIQ 320
           ++N   W ++I G   N D                               +E A+ LF +
Sbjct: 220 KRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRK 279

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PD----VPINNALITMYA 375
           M++ G + D  T++S++S  +      LG Q+H  + K  + PD    + + N LIT+Y 
Sbjct: 280 MRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYW 339

Query: 376 RCGAIVEARIIFEEMKLL------------------------------KNVVSWNAMIGG 405
           + G +  AR IF EM +                               KN+++W  MI G
Sbjct: 340 KYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISG 399

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
            A +GF  +AL+LF  M+     P    F   ++AC+  G +E GRQ    +V+  G + 
Sbjct: 400 LAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVH-LGHDS 458

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
            +    +++ +  R G +E A  +   MPF  D   W +++ A   H +   A    E +
Sbjct: 459 TLSVGNAMITMYARCGIVEAARTMFLTMPF-VDPVSWNSMIAALGQHGHGVKAIELYEQM 517

Query: 526 MK--VEPENSTPYVLL 539
           +K  + P+  T   +L
Sbjct: 518 LKEGILPDRRTFLTVL 533


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 185/521 (35%), Positives = 305/521 (58%), Gaps = 16/521 (3%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D    N ++  YAK+G + +A  LF+ M  R+V SWNAM+S + ++G+V +    FD+M 
Sbjct: 57  DTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMS 116

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
             D+ S + +++G   NG   +A    V+     +G E     + +++    Q   ++  
Sbjct: 117 VHDAVSYNTVIAGFSGNGCSSQALEFFVRMQE--EGFESTDYTHVSVLHACSQLLDIKRG 174

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT 238
           +++  +I V    GE       ++  WN++   YAK G +  AR +F++M+ ++  SWN+
Sbjct: 175 KQIHGRI-VATSLGE-------SVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNS 226

Query: 239 MISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
           MISGY+     E  + LF +M      PD +T + ++S Y Q G ++ A   F+ + +K+
Sbjct: 227 MISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKD 286

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH- 353
            V W +M+ GC  N   E A+ LF +M +E  +PD  T SS++S  + +  L  G  +H 
Sbjct: 287 KVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHG 346

Query: 354 QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
           + V   V  D+ +++AL+ MY++CG   +A I+F+ M L +NV+SWN+MI G A +G   
Sbjct: 347 KAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRM-LTRNVISWNSMILGYAQNGKDL 405

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           EAL L++ M    + P  ITF+ VLSAC HAGLVE G+ +F S+   +G+ P  +H++ +
Sbjct: 406 EALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCM 465

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           ++++GR G ++ A+DLIK M FEP+  +W  LL  CR++ +V   ++AA  L +++P N+
Sbjct: 466 INLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNA 525

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            PY++L N+YA  GRW D   VR LMK+N IKK   YSW++
Sbjct: 526 GPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIE 566



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 211/462 (45%), Gaps = 80/462 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K   ++ AR LFD+M +RDV SWN M+S Y     SG +E+ R +FD M   D 
Sbjct: 64  LLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAY---SKSGNVEDLRAVFDQMSVHDA 120

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMP--------------------------------- 87
           V++NTVI+G++  G   +AL  F  M                                  
Sbjct: 121 VSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGR 180

Query: 88  ------ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                   +V  WNA+ + + + G +  A   FDRM  ++  S ++++SG +QNG+ +  
Sbjct: 181 IVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETC 240

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            ++   C  +  G        + ++  Y Q G ++EA K F +I             +++
Sbjct: 241 TKLF--CEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIK------------EKD 286

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLFV 257
            V W +M++  A+ G    A  +F +ML      D F+ ++++S    +  + +   +  
Sbjct: 287 KVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHG 346

Query: 258 K-----MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN-KDY 311
           K     + H D L  +A+V  Y++ G    A   FKRM  +N++SWNSMI G   N KD 
Sbjct: 347 KAVIFGVDH-DLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDL 405

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHLGM-----QIHQMVTKTVIPDV 364
           E A+ L+ +M  E  KPD  TF  +LS  M +G+V+   G      +IH M      P  
Sbjct: 406 E-ALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMN-----PTF 459

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
              + +I +  R G + +A  + + M    N + W+ ++  C
Sbjct: 460 DHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVC 501



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 194/458 (42%), Gaps = 93/458 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGF--- 44
           M+S Y K   +   R +FD+M   D VS+N +I+G             ++  +  GF   
Sbjct: 95  MLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFEST 154

Query: 45  -------LEEARYLFDIMPERD-------------CVTWNTVISGYAKTGEMEEALRLFN 84
                  L     L DI   +                 WN + + YAK G +++A  LF+
Sbjct: 155 DYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFD 214

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            M  +NVVSWN+MISG+LQNG      + F  M       D  ++S ++S   Q G +DE
Sbjct: 215 RMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDE 274

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI------PVN------ 188
           A +   +   +     D V  + T++VG  Q G+ E+A  LF ++      P N      
Sbjct: 275 ACKTFREIKEK-----DKV-CWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSV 328

Query: 189 ---CDR----GEGNVRFKR--------NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
              C R     +G     +        +++  ++++  Y+K G+   A  +F++ML R+ 
Sbjct: 329 VSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNV 388

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKR 289
            SWN+MI GY       EA  L+ +M H    PD +T+  ++S     G +E    +F  
Sbjct: 389 ISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYS 448

Query: 290 MPQ-----KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
           + +          ++ MI         + A+ L   M  E   P+   +S++LS+     
Sbjct: 449 ISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFE---PNCLIWSTLLSVCRINC 505

Query: 345 DLHLGMQIHQMVTKTVIPDVPINNA----LITMYARCG 378
           D++ G    +M  + +    P N      L  +YA CG
Sbjct: 506 DVNNG----EMAARHLFELDPHNAGPYIMLSNIYAACG 539


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 210/626 (33%), Positives = 336/626 (53%), Gaps = 72/626 (11%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM---PERDCV 61
           ++K   M  AR+ F+E+  +DV  WN+M+SGY +S+G  F +  + + D+     + D V
Sbjct: 235 FIKCGRMDIARRFFEEIEFKDVFMWNIMVSGY-TSKGE-FKKALKCISDMKLSGVKPDQV 292

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAIEFFDR 116
           TWN +ISGYA++G+ EEA + F  M        NVVSW A+I+G  QNG    A+  F +
Sbjct: 293 TWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRK 352

Query: 117 MP----GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
           M       +S ++++ VS       L     +   C    +   DL+   N+L+  Y + 
Sbjct: 353 MVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVG-NSLVDYYAKC 411

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM---- 228
             VE AR+ F  I             + ++VSWN+M+  YA  G    A E+  +M    
Sbjct: 412 RSVEVARRKFGMIK------------QTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQG 459

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT------------------ 266
           +E D  +WN +++G+    D + A   F +M      P+T T                  
Sbjct: 460 IEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGK 519

Query: 267 -----------------WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
                             +A++S Y+   +LE+A   F  +  +++V WNS+I+ C  + 
Sbjct: 520 EIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSG 579

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INN 368
               A+ L  +M +   + +  T  S L   S +  L  G +IHQ + +  +     I N
Sbjct: 580 RSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILN 639

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           +LI MY RCG+I ++R IF+ M   +++VSWN MI     HGF  +A+ LF+  R+  + 
Sbjct: 640 SLIDMYGRCGSIQKSRRIFDLMPQ-RDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLK 698

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P +ITF ++LSAC+H+GL+EEG ++FK M  EY ++P +E +A +VD++ R G+  + ++
Sbjct: 699 PNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLE 758

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
            I+ MPFEP+ AVWG+LLGACR+H N +LA+ AA  L ++EP++S  YVL+ N+Y+  GR
Sbjct: 759 FIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGR 818

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVD 574
           W+DA ++R LMK   + KP G SW++
Sbjct: 819 WEDAAKIRCLMKERGVTKPPGCSWIE 844



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 150/589 (25%), Positives = 253/589 (42%), Gaps = 116/589 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           ++  Y +   +  AR++FD+M +R+V SW  ++  Y    G G  EE   LF +M     
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYC---GLGDYEETIKLFYLMVNEGV 186

Query: 56  -PER----------------------------------DCVTWNTVISGYAKTGEMEEAL 80
            P+                                    CV   +++  + K G M+ A 
Sbjct: 187 RPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVK-GSILDMFIKCGRMDIAR 245

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNG 136
           R F  +  ++V  WN M+SG+   G+   A++    M       D  + +A++SG  Q+G
Sbjct: 246 RFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSG 305

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI----------- 185
           + +EA++  ++ G   D   ++V ++  LI G  Q G   EA  +F K+           
Sbjct: 306 QFEEASKYFLEMGGLKDFKPNVV-SWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSIT 364

Query: 186 ---PVNCDRGEGNVRFKRNIVSW--------------NSMIMCYAKAGDVVSAREIFEQM 228
               V+       +R  R I  +              NS++  YAK   V  AR  F  +
Sbjct: 365 IASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMI 424

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELAL 284
            + D  SWN M++GY      EEA  L  +M      PD +TWN +V+G+ Q G+ + AL
Sbjct: 425 KQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAAL 484

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
           +FF+RM        +SM                       G  P+  T S  L+    + 
Sbjct: 485 EFFQRM--------HSM-----------------------GMDPNTTTISGALAACGQVR 513

Query: 345 DLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           +L LG +IH  V +  I     + +ALI+MY+ C ++  A  +F E+   ++VV WN++I
Sbjct: 514 NLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELS-TRDVVVWNSII 572

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
             CA  G +  AL+L + M    V    +T +S L AC+    + +G++     +   G+
Sbjct: 573 SACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKE-IHQFIIRCGL 631

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           +       SL+D+ GR G ++ +  +   MP + D   W  ++    +H
Sbjct: 632 DTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMH 679



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 157/373 (42%), Gaps = 81/373 (21%)

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW 267
           Y + G V  AR +F++M ER+ FSW  ++  Y  + D EE   LF  M +    PD   +
Sbjct: 134 YCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVF 193

Query: 268 ------------------------------NAMVSG-----YAQIGNLELALDFFKRMPQ 292
                                         N+ V G     + + G +++A  FF+ +  
Sbjct: 194 PKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEF 253

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K++  WN M++G  +  +++ A+K    M++ G KPD+ T+                   
Sbjct: 254 KDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTW------------------- 294

Query: 353 HQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK----NVVSWNAMIGGCAS 408
                          NA+I+ YA+ G   EA   F EM  LK    NVVSW A+I G   
Sbjct: 295 ---------------NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQ 339

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           +G+  EAL +F+ M    V P  IT  S +SAC +  L+  GR+     +    ++  + 
Sbjct: 340 NGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLL 399

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528
              SLVD   +   +E A     GM  + D   W A+L    +  + E    A E L ++
Sbjct: 400 VGNSLVDYYAKCRSVEVARRKF-GMIKQTDLVSWNAMLAGYALRGSHE---EAIELLSEM 455

Query: 529 EPENSTPYVLLYN 541
           + +   P ++ +N
Sbjct: 456 KFQGIEPDIITWN 468



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 180/427 (42%), Gaps = 66/427 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y K R +  AR+ F  + Q D+VSWN M++GY + RGS   EEA  L   M     
Sbjct: 404 LVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGY-ALRGSH--EEAIELLSEMKFQGI 460

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D +TWN +++G+ + G+ + AL  F  M +  +      ISG L        ++    
Sbjct: 461 EPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKE 520

Query: 117 MPG---RDSASL-----SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           + G   R+   L     SAL+S       L+ A  V  +  +R     D+V  +N++I  
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTR-----DVV-VWNSIISA 574

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
             Q GR   A  L  ++ ++      NV    N V+  S +   +K   +   +EI + +
Sbjct: 575 CAQSGRSVNALDLLREMNLS------NVEV--NTVTMVSALPACSKLAALRQGKEIHQFI 626

Query: 229 ----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
               L+   F  N++I  Y     ++++  +F  MP  D ++WN M+S Y   G    A+
Sbjct: 627 IRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAV 686

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
           + F+                               Q +  G KP+  TF+++LS  S   
Sbjct: 687 NLFQ-------------------------------QFRTMGLKPNHITFTNLLSACSHSG 715

Query: 345 DLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
            +  G +  +M+     + P V     ++ + +R G   E     E+M    N   W ++
Sbjct: 716 LIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSL 775

Query: 403 IGGCASH 409
           +G C  H
Sbjct: 776 LGACRIH 782



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 122/280 (43%), Gaps = 36/280 (12%)

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           F  + ++  Y     +E+A  +F KM   +  +W A++  Y  +G               
Sbjct: 125 FLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLG--------------- 169

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
                           DYE  IKLF  M  EG +PD   F  +    S + +  +G  ++
Sbjct: 170 ----------------DYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 213

Query: 354 Q-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
             M++     +  +  +++ M+ +CG +  AR  FEE++  K+V  WN M+ G  S G  
Sbjct: 214 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIE-FKDVFMWNIMVSGYTSKGEF 272

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
            +AL+    M+   V P  +T+ +++S  A +G  EE  ++F  M      +P +  + +
Sbjct: 273 KKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTA 332

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGAC 509
           L+    ++G   +A+ + + M  E   P+     + + AC
Sbjct: 333 LIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 117/251 (46%), Gaps = 9/251 (3%)

Query: 328 PDR--HTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEAR 384
           PD     ++SIL     + +L LG Q+H Q+V   V     + + L+ +Y + G + +AR
Sbjct: 85  PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDAR 144

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F++M   +NV SW A++      G   E ++LF  M +  V P +  F  V  AC+  
Sbjct: 145 RMFDKMS-ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSEL 203

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
                G+  +  M++  G E       S++D+  + GR++ A    + + F+ D  +W  
Sbjct: 204 KNYRVGKDVYDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNI 261

Query: 505 LLGACRVHNNVE--LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
           ++         +  L  ++   L  V+P+  T +  + + YA  G++++A++  L M   
Sbjct: 262 MVSGYTSKGEFKKALKCISDMKLSGVKPDQVT-WNAIISGYAQSGQFEEASKYFLEMGGL 320

Query: 563 NIKKPTGYSWV 573
              KP   SW 
Sbjct: 321 KDFKPNVVSWT 331



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 26/196 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
           +I  Y +   + K+R++FD MPQRD+VSWNVMIS Y      GF  +A  LF       +
Sbjct: 641 LIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVY---GMHGFGMDAVNLFQQFRTMGL 697

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVAN 109
            P    +T+  ++S  + +G +EE  + F  M         V  +  M+    + G    
Sbjct: 698 KPNH--ITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNE 755

Query: 110 AIEFFDRMPGRDSASLSALVSGLIQ---NGELDE-AARVLVKCGSRCDGGEDLVRAYNTL 165
            +EF ++MP   +A++   + G  +   N +L E AAR L +   +  G       Y  +
Sbjct: 756 TLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGN------YVLM 809

Query: 166 IVGYGQRGRVEEARKL 181
              Y   GR E+A K+
Sbjct: 810 ANIYSAAGRWEDAAKI 825


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 183/521 (35%), Positives = 299/521 (57%), Gaps = 16/521 (3%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D    N ++  YAK G++ +A  LF+ M  R++ SWNA++S + ++G + N    FDRMP
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
            RDS S +  ++G   N    E+  +  +     +G E       +++    Q   +   
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQR--EGFEPTEYTIVSILNASAQLSDLRYG 174

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT 238
           +++   I V          F  N+  WN++   YAK G++  AR +F+ + +++  SWN 
Sbjct: 175 KQIHGSIIVR--------NFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNL 226

Query: 239 MISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
           MISGY      E+   L  +M      PD +T + +++ Y Q G ++ A   F    +K+
Sbjct: 227 MISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKD 286

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH- 353
           +V W +M+ G   N   E A+ LF +M +E  +PD +T SS++S  + +  LH G  +H 
Sbjct: 287 IVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHG 346

Query: 354 QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
           + +   +  ++ +++ALI MY++CG I +AR +F  M   +NVVSWNAMI GCA +G   
Sbjct: 347 KSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPT-RNVVSWNAMIVGCAQNGHDK 405

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           +ALELF++M   K  P  +TFI +LSAC H   +E+G+++F S+ N++G+ P ++H+A +
Sbjct: 406 DALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACM 465

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           V+++GR GR+E A+ LIK M  +PD  +W  LL  C    ++  A+VAA  L +++P  +
Sbjct: 466 VNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIA 525

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            PY++L NMYA +GRW D   VR LMKS N+KK  G+SW++
Sbjct: 526 VPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIE 566



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 190/455 (41%), Gaps = 89/455 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++S Y K   +   +  FD MP RD VS+N  I+G+    G+   +E+  LF  M     
Sbjct: 95  LLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGF---SGNSCPQESLELFKRMQREGF 151

Query: 59  -------------------------------------DCVTWNTVISGYAKTGEMEEALR 81
                                                +   WN +   YAK GE+E+A  
Sbjct: 152 EPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARW 211

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD--RMPGR--DSASLSALVSGLIQNGE 137
           LF+ +  +N+VSWN MISG+ +NG     I      R+ G   D  ++S +++   Q G 
Sbjct: 212 LFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGR 271

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           +DEA RV  +   +     D+V  +  ++VGY + GR E+A  LF+++ +  +  E +  
Sbjct: 272 VDEARRVFSEFKEK-----DIV-CWTAMMVGYAKNGREEDALLLFNEMLL--EHIEPDSY 323

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
              ++VS +   +     G  V  + I    L  +    + +I  Y     +++A ++F 
Sbjct: 324 TLSSVVS-SCAKLASLHHGQAVHGKSILAG-LNNNLLVSSALIDMYSKCGFIDDARSVFN 381

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
            MP  + ++WNAM+ G AQ G+ + AL+ F+ M Q+                        
Sbjct: 382 LMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKF---------------------- 419

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYA 375
                    KPD  TF  ILS       +  G +    +T    + P +     ++ +  
Sbjct: 420 ---------KPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLG 470

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           R G I +A  + + M    + + W+ ++  C++ G
Sbjct: 471 RTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKG 505


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 210/626 (33%), Positives = 336/626 (53%), Gaps = 72/626 (11%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM---PERDCV 61
           ++K   M  AR+ F+E+  +DV  WN+M+SGY +S+G  F +  + + D+     + D V
Sbjct: 235 FIKCGRMDIARRFFEEIEFKDVFMWNIMVSGY-TSKGE-FKKALKCISDMKLSGVKPDQV 292

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAIEFFDR 116
           TWN +ISGYA++G+ EEA + F  M        NVVSW A+I+G  QNG    A+  F +
Sbjct: 293 TWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRK 352

Query: 117 MP----GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
           M       +S ++++ VS       L     +   C    +   DL+   N+L+  Y + 
Sbjct: 353 MVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVG-NSLVDYYAKC 411

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM---- 228
             VE AR+ F  I             + ++VSWN+M+  YA  G    A E+  +M    
Sbjct: 412 RSVEVARRKFGMIK------------QTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQG 459

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT------------------ 266
           +E D  +WN +++G+    D + A   F +M      P+T T                  
Sbjct: 460 IEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGK 519

Query: 267 -----------------WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
                             +A++S Y+   +LE+A   F  +  +++V WNS+I+ C  + 
Sbjct: 520 EIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSG 579

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INN 368
               A+ L  +M +   + +  T  S L   S +  L  G +IHQ + +  +     I N
Sbjct: 580 RSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILN 639

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           +LI MY RCG+I ++R IF+ M   +++VSWN MI     HGF  +A+ LF+  R+  + 
Sbjct: 640 SLIDMYGRCGSIQKSRRIFDLMPQ-RDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLK 698

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P +ITF ++LSAC+H+GL+EEG ++FK M  EY ++P +E +A +VD++ R G+  + ++
Sbjct: 699 PNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLE 758

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
            I+ MPFEP+ AVWG+LLGACR+H N +LA+ AA  L ++EP++S  YVL+ N+Y+  GR
Sbjct: 759 FIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGR 818

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVD 574
           W+DA ++R LMK   + KP G SW++
Sbjct: 819 WEDAAKIRCLMKERGVTKPPGCSWIE 844



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 150/585 (25%), Positives = 251/585 (42%), Gaps = 116/585 (19%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM------PER 58
           Y +   +  AR++FD+M +R+V SW  ++  Y    G G  EE   LF +M      P+ 
Sbjct: 134 YCQTGCVEDARRMFDKMSERNVFSWTAIMEMYC---GLGDYEETIKLFYLMVNEGVRPDH 190

Query: 59  ----------------------------------DCVTWNTVISGYAKTGEMEEALRLFN 84
                                              CV   +++  + K G M+ A R F 
Sbjct: 191 FVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVK-GSILDMFIKCGRMDIARRFFE 249

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDE 140
            +  ++V  WN M+SG+   G+   A++    M       D  + +A++SG  Q+G+ +E
Sbjct: 250 EIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEE 309

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI--------------P 186
           A++  ++ G   D   ++V ++  LI G  Q G   EA  +F K+               
Sbjct: 310 ASKYFLEMGGLKDFKPNVV-SWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASA 368

Query: 187 VNCDRGEGNVRFKRNIVSW--------------NSMIMCYAKAGDVVSAREIFEQMLERD 232
           V+       +R  R I  +              NS++  YAK   V  AR  F  + + D
Sbjct: 369 VSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTD 428

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFK 288
             SWN M++GY      EEA  L  +M      PD +TWN +V+G+ Q G+ + AL+FF+
Sbjct: 429 LVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQ 488

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
           RM        +SM                       G  P+  T S  L+    + +L L
Sbjct: 489 RM--------HSM-----------------------GMDPNTTTISGALAACGQVRNLKL 517

Query: 349 GMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G +IH  V +  I     + +ALI+MY+ C ++  A  +F E+   ++VV WN++I  CA
Sbjct: 518 GKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELS-TRDVVVWNSIISACA 576

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
             G +  AL+L + M    V    +T +S L AC+    + +G++     +   G++   
Sbjct: 577 QSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKE-IHQFIIRCGLDTCN 635

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
               SL+D+ GR G ++ +  +   MP + D   W  ++    +H
Sbjct: 636 FILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMH 679



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 157/373 (42%), Gaps = 81/373 (21%)

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW 267
           Y + G V  AR +F++M ER+ FSW  ++  Y  + D EE   LF  M +    PD   +
Sbjct: 134 YCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVF 193

Query: 268 ------------------------------NAMVSG-----YAQIGNLELALDFFKRMPQ 292
                                         N+ V G     + + G +++A  FF+ +  
Sbjct: 194 PKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEF 253

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K++  WN M++G  +  +++ A+K    M++ G KPD+ T+                   
Sbjct: 254 KDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTW------------------- 294

Query: 353 HQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK----NVVSWNAMIGGCAS 408
                          NA+I+ YA+ G   EA   F EM  LK    NVVSW A+I G   
Sbjct: 295 ---------------NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQ 339

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           +G+  EAL +F+ M    V P  IT  S +SAC +  L+  GR+     +    ++  + 
Sbjct: 340 NGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLL 399

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528
              SLVD   +   +E A     GM  + D   W A+L    +  + E    A E L ++
Sbjct: 400 VGNSLVDYYAKCRSVEVARRKF-GMIKQTDLVSWNAMLAGYALRGSHE---EAIELLSEM 455

Query: 529 EPENSTPYVLLYN 541
           + +   P ++ +N
Sbjct: 456 KFQGIEPDIITWN 468



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 180/427 (42%), Gaps = 66/427 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y K R +  AR+ F  + Q D+VSWN M++GY + RGS   EEA  L   M     
Sbjct: 404 LVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGY-ALRGSH--EEAIELLSEMKFQGI 460

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D +TWN +++G+ + G+ + AL  F  M +  +      ISG L        ++    
Sbjct: 461 EPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKE 520

Query: 117 MPG---RDSASL-----SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           + G   R+   L     SAL+S       L+ A  V  +  +R     D+V  +N++I  
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTR-----DVV-VWNSIISA 574

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
             Q GR   A  L  ++ ++      NV    N V+  S +   +K   +   +EI + +
Sbjct: 575 CAQSGRSVNALDLLREMNLS------NVEV--NTVTMVSALPACSKLAALRQGKEIHQFI 626

Query: 229 ----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
               L+   F  N++I  Y     ++++  +F  MP  D ++WN M+S Y   G     +
Sbjct: 627 IRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHG---FGM 683

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
           D                            A+ LF   +  G KP+  TF+++LS  S   
Sbjct: 684 D----------------------------AVNLFQXFRTMGLKPNHITFTNLLSACSHSG 715

Query: 345 DLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
            +  G +  +M+     + P V     ++ + +R G   E     E+M    N   W ++
Sbjct: 716 LIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSL 775

Query: 403 IGGCASH 409
           +G C  H
Sbjct: 776 LGACRIH 782



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 122/280 (43%), Gaps = 36/280 (12%)

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           F  + ++  Y     +E+A  +F KM   +  +W A++  Y  +G               
Sbjct: 125 FLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLG--------------- 169

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
                           DYE  IKLF  M  EG +PD   F  +    S + +  +G  ++
Sbjct: 170 ----------------DYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 213

Query: 354 Q-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
             M++     +  +  +++ M+ +CG +  AR  FEE++  K+V  WN M+ G  S G  
Sbjct: 214 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIE-FKDVFMWNIMVSGYTSKGEF 272

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
            +AL+    M+   V P  +T+ +++S  A +G  EE  ++F  M      +P +  + +
Sbjct: 273 KKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTA 332

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGAC 509
           L+    ++G   +A+ + + M  E   P+     + + AC
Sbjct: 333 LIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 117/251 (46%), Gaps = 9/251 (3%)

Query: 328 PDR--HTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEAR 384
           PD     ++SIL     + +L LG Q+H Q+V   V     + + L+ +Y + G + +AR
Sbjct: 85  PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDAR 144

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F++M   +NV SW A++      G   E ++LF  M +  V P +  F  V  AC+  
Sbjct: 145 RMFDKMS-ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSEL 203

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
                G+  +  M++  G E       S++D+  + GR++ A    + + F+ D  +W  
Sbjct: 204 KNYRVGKDVYDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNI 261

Query: 505 LLGACRVHNNVE--LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
           ++         +  L  ++   L  V+P+  T +  + + YA  G++++A++  L M   
Sbjct: 262 MVSGYTSKGEFKKALKCISDMKLSGVKPDQVT-WNAIISGYAQSGQFEEASKYFLEMGGL 320

Query: 563 NIKKPTGYSWV 573
              KP   SW 
Sbjct: 321 KDFKPNVVSWT 331



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 22/194 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +I  Y +   + K+R++FD MPQRD+VSWNVMIS Y      GF  +A  LF        
Sbjct: 641 LIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVY---GMHGFGMDAVNLFQXFRTMGL 697

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
           + + +T+  ++S  + +G +EE  + F  M         V  +  M+    + G     +
Sbjct: 698 KPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETL 757

Query: 112 EFFDRMPGRDSASLSALVSGLIQ---NGELDE-AARVLVKCGSRCDGGEDLVRAYNTLIV 167
           EF ++MP   +A++   + G  +   N +L E AAR L +   +  G       Y  +  
Sbjct: 758 EFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGN------YVLMAN 811

Query: 168 GYGQRGRVEEARKL 181
            Y   GR E+A K+
Sbjct: 812 IYSAAGRWEDAAKI 825


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 219/636 (34%), Positives = 335/636 (52%), Gaps = 82/636 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--R 58
           +I  Y K  ++  A  LFDE+ Q D+V+   +I+ + S+  S     AR +F   P   R
Sbjct: 56  LIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNL---AREIFFATPLGIR 112

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARN---------------------------- 90
           D V +N +I+GY+   +   A+ LF  +  RN                            
Sbjct: 113 DTVCYNAMITGYSHNNDGFGAIELFRDL-LRNGFRPDNFTFTSVLGALALIVEDEKQCQQ 171

Query: 91  ------------VVS-WNAMISGFLQNGD---------VANAIEFFDRMPGRDSASLSAL 128
                       V S  NA++S F++            +A A + FD M  RD  S + +
Sbjct: 172 IHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTM 231

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDG-GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV 187
           ++G ++NGELD A + L       DG  E LV A+N +I GY   G   EA ++F K+ +
Sbjct: 232 IAGYVRNGELDAARQFL-------DGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYL 284

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT-----FSW---NTM 239
                   +  + +  ++ S++   A AG  +  +++   +L  +      FS    N +
Sbjct: 285 --------LGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNAL 336

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
            + Y     ++EA  +F +MP  D ++WNA++SGY   G ++ A  FF+ MP++NL++W 
Sbjct: 337 ATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWT 396

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTK 358
            MI+G   N   E ++KLF +M+ EG +P  + F+  +   + +  L  G Q+H Q+V  
Sbjct: 397 VMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRL 456

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
                +   NALITMYA+CG +  A  +F  M  L +V SWNAMI     HG   +ALEL
Sbjct: 457 GFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSV-SWNAMIAALGQHGHGAQALEL 515

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F+ M    +LP  ITF++VLS C+HAGLVEEG ++FKSM   YGI P  +H+A ++D++ 
Sbjct: 516 FELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLC 575

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           R G+  +A D+I+ MP EP   +W ALL  CR+H N++L   AAE L ++ P++   YVL
Sbjct: 576 RAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVL 635

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           L NMYA VGRWDD  +VR LM+   +KK  G SW++
Sbjct: 636 LSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIE 671



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 157/360 (43%), Gaps = 88/360 (24%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           FK      N +I  Y K+ D+VSA  +F+++ + D  +  T+I+ +    +   A  +F 
Sbjct: 46  FKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFF 105

Query: 258 KMPHP--DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
             P    DT+ +NAM++GY+                                N D  GAI
Sbjct: 106 ATPLGIRDTVCYNAMITGYSH-------------------------------NNDGFGAI 134

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIV-DLHLGMQIHQMVTKTVIPDV-PINNALITM 373
           +LF  +   G +PD  TF+S+L   + IV D     QIH  V K+    V  + NAL+++
Sbjct: 135 ELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSV 194

Query: 374 YARCG---------AIVEARIIFEEM-------------------------KLL-----K 394
           + +C           +  AR +F+EM                         + L     K
Sbjct: 195 FVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEK 254

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
            VV+WNAMI G   HGF  EALE+F+ M    +     T+ SVLSACA+AG    G+Q  
Sbjct: 255 LVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQ-- 312

Query: 455 KSMVNEYGI--EPR------IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
              V+ Y +  EPR      +    +L  +  + G++++A  +   MP + D   W A+L
Sbjct: 313 ---VHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVK-DLVSWNAIL 368


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 221/652 (33%), Positives = 330/652 (50%), Gaps = 96/652 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y +   M +A++LF+EMP+R+  SWN MI GY+ S   G   ++  LFD MP +D 
Sbjct: 48  LLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKG---KSLELFDSMPHKDA 104

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF------ 114
            +WN VISG+AK G +E A RLFN MP +N ++WN+MI G+  NG    A+  F      
Sbjct: 105 FSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLN 164

Query: 115 --DRMPGRDSASLSALVSGLIQNGELDEA----ARVLV------------------KCGS 150
             +R  G D+  L+ +V      G LD      AR++V                  KCG 
Sbjct: 165 PLERFCG-DTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGD 223

Query: 151 RCDGGEDLVR--------AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
             D    ++         + + LI GY   GR+ +AR++F      C            +
Sbjct: 224 -IDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNAC------------V 270

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG-------------YIH 245
           V WNSMI  Y    + + A E+F  M    ++ D  ++ +++S              + H
Sbjct: 271 VLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAH 330

Query: 246 V---------------LDM-------EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           V               +DM       ++A  LF  +   DT+  N+M++ Y+  G ++ A
Sbjct: 331 VYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDA 390

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F  MP K+L+SWNSMI G   N     A+ LF +M   G + D+ + + ++S  + I
Sbjct: 391 RQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASI 450

Query: 344 VDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             L LG QI    T   +  D  I+ +L+  Y +CG +   R +F+ M +  + V WN+M
Sbjct: 451 SSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRM-MKSDEVPWNSM 509

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           + G A++G   EAL +F  MRS  V PT ITF+ VLSAC H GLVEEGR+ F +M  +Y 
Sbjct: 510 LMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYH 569

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           I P IEH++ +VD+  R G LEDAM+LI+ MP + D ++W ++L  C  H N  L +  A
Sbjct: 570 INPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVA 629

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + ++ ++PENS  YV L  +YA    W  + +VR LM    I K  G SW D
Sbjct: 630 KRIIDLDPENSGAYVQLSGIYATFEDWGRSAQVRKLMYDKKIPKVPGCSWAD 681



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 141/476 (29%), Positives = 235/476 (49%), Gaps = 44/476 (9%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N ++  Y++   M EA +LF  MP RN  SWN MI G+L++G    ++E FD MP +D+ 
Sbjct: 46  NRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAF 105

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S + ++SG  + G L+ A R+  +   + +G      A+N++I GY   GR +EA  LF 
Sbjct: 106 SWNVVISGFAKEGNLEVARRLFNEMPWK-NG-----IAWNSMIHGYACNGRPKEAVGLFK 159

Query: 184 KIPVN-CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
            + +N  +R  G+      +V   + +      G  + AR + ++ +E D+   +++++ 
Sbjct: 160 DLSLNPLERFCGDTFVLATVVGACTNLGAL-DCGKQIHARIVVDE-VEFDSVLGSSLVNL 217

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
           Y    D++ A+++   M  PD  + +A++SGYA  G +  A   F       +V WNSMI
Sbjct: 218 YGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMI 277

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH--------- 353
           +G   N +   A++LF  M+ +G + D  TF+S+LS  S +  +  G+Q+H         
Sbjct: 278 SGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFT 337

Query: 354 ----------QMVTKTVIP-------------DVPINNALITMYARCGAIVEARIIFEEM 390
                      M +K   P             D  + N++IT+Y+ CG I +AR IF+ M
Sbjct: 338 NDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTM 397

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
              K+++SWN+MI G + +    EAL+LF  M    +     +   V+SACA    +E G
Sbjct: 398 P-SKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELG 456

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            Q F +     G+E       SLVD   + G +E    L   M  + D+  W ++L
Sbjct: 457 EQIF-ARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRM-MKSDEVPWNSML 510



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 19/241 (7%)

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD--VPINNALITMYARCGAIVEARII 386
           D H+ +  L   +    ++ G  +H +  K+ +    + I N L+ MY+RC ++ EA+ +
Sbjct: 5   DLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQL 64

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           FEEM   +N  SWN MI G    G   ++LELF SM         +    V+S  A  G 
Sbjct: 65  FEEMP-KRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNV----VISGFAKEGN 119

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP------DKA 500
           +E  R+ F  M  + GI      + S++     +GR ++A+ L K +   P      D  
Sbjct: 120 LEVARRLFNEMPWKNGIA-----WNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTF 174

Query: 501 VWGALLGACRVHNNVELA-QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
           V   ++GAC     ++   Q+ A  ++     +S     L N+Y   G  D AN V  LM
Sbjct: 175 VLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLM 234

Query: 560 K 560
           K
Sbjct: 235 K 235


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 188/516 (36%), Positives = 296/516 (57%), Gaps = 41/516 (7%)

Query: 66  VISGYAKTGEMEEALRLFNSM--PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           ++S YA    +  + R+F+++  P  +    N M+  +   G   +A+  F  MP RDS 
Sbjct: 390 LVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYALGGAPRDALAAFSAMPRRDSF 449

Query: 124 SLSALVSGLIQNG--ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           + S L+  L   G   +      +VK GS  D         N LI  Y + G   +ARK+
Sbjct: 450 TYSFLIKALSAAGVAPVRAVHSHVVKLGSVED-----TFVGNALIDAYSKNGGFSDARKV 504

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           FD++P            +R++VSWN+ +    + G++  AR++F++M E+DT SWNT++ 
Sbjct: 505 FDEMP------------ERDVVSWNTAMAAMVREGELAGARKLFDEMPEKDTVSWNTILD 552

Query: 242 GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           GY    ++E A  LF +MP  + ++W+ MVSGY + G+LE+A   F +MP KNLV+W  M
Sbjct: 553 GYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIM 612

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
           +         E +++L +   V           SIL+  +    L LG +IH+ V K  +
Sbjct: 613 MK--------EASVELDVAAVV-----------SILAACAESGSLSLGKRIHRYVRKRNL 653

Query: 362 P-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
                + NALI M+ +CG +  A  +F+   + K+ VSWN++IGG A HG   +ALELF 
Sbjct: 654 GRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFA 713

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M+     P  +T I+VLSAC H G V+EGR++F +M  +YGI P+IEH+  ++D++GR 
Sbjct: 714 QMKQQGFNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRG 773

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G +++A+DLIK MP+EP++ +WG+LL ACR+H NVE A++A   L K++P N+  Y +L 
Sbjct: 774 GLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLS 833

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           N+YA+ G+W D  + R+ MK    +K  G SWV+ +
Sbjct: 834 NIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELN 869



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 170/340 (50%), Gaps = 42/340 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K    + ARK+FDEMP+RDVVSWN  ++  +     G L  AR LFD MPE+D 
Sbjct: 488 LIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVRE---GELAGARKLFDEMPEKDT 544

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT++ GY K GE+E A  LF  MP RNVVSW+ M+SG+ + GD+  A   FD+MPG+
Sbjct: 545 VSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGK 604

Query: 121 ----------------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT 164
                           D A++ ++++   ++G L    R+      R  G    V   N 
Sbjct: 605 NLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHV--CNA 662

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           LI  + + G V  A  +FD   V           +++ VSWNS+I  +A  G    A E+
Sbjct: 663 LIDMFCKCGCVNRADYVFDTETV-----------QKDSVSWNSIIGGFAMHGHGDKALEL 711

Query: 225 FEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYA 275
           F QM ++    D  +   ++S   H+  ++E    F  M       P    +  M+    
Sbjct: 712 FAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLG 771

Query: 276 QIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
           + G ++ A+D  K MP + N V W S+++ C  +K+ E A
Sbjct: 772 RGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYA 811



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 197/448 (43%), Gaps = 71/448 (15%)

Query: 1   MISGYVKRREMAKARKLFDEM--PQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           ++S Y   R +  +R++FD +  P  D    N M+  Y      G   +A   F  MP R
Sbjct: 390 LVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYALG---GAPRDALAAFSAMPRR 446

Query: 59  DCVTW----------------------------------NTVISGYAKTGEMEEALRLFN 84
           D  T+                                  N +I  Y+K G   +A ++F+
Sbjct: 447 DSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFD 506

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            MP R+VVSWN  ++  ++ G++A A + FD MP +D+ S + ++ G  + GE++ A  +
Sbjct: 507 EMPERDVVSWNTAMAAMVREGELAGARKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFEL 566

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
             +   R       V +++T++ GY ++G +E AR +FDK+P             +N+V+
Sbjct: 567 FQRMPERN------VVSWSTMVSGYCKKGDLEMARVIFDKMP------------GKNLVT 608

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDT 264
           W  M+   +   DV +   I     E  + S    I  Y+   ++  ++++         
Sbjct: 609 WTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVC-------- 660

Query: 265 LTWNAMVSGYAQIGNLELALDFF-KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
              NA++  + + G +  A   F     QK+ VSWNS+I G   +   + A++LF QM+ 
Sbjct: 661 ---NALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQ 717

Query: 324 EGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIV 381
           +G  PD  T  ++LS  +  G VD       +      ++P +     +I +  R G I 
Sbjct: 718 QGFNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIK 777

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASH 409
           EA  + + M    N V W +++  C  H
Sbjct: 778 EAVDLIKSMPWEPNEVIWGSLLSACRLH 805


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 211/639 (33%), Positives = 323/639 (50%), Gaps = 110/639 (17%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y K      A  LF+EMP +   SWN ++SGY      G LE+A  +FD++P RD V+W 
Sbjct: 20  YAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAK---QGKLEKAHQVFDLIPVRDSVSWT 76

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSW------------------------------ 94
           T+I GY + G  E+A+++F  M    V+                                
Sbjct: 77  TIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKL 136

Query: 95  ---------NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
                    N++++ + + GD+  A   FDRM  R+++S +A++S  +  G +D A    
Sbjct: 137 GLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQF 196

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI----PVNCDRGE-------- 193
                R     D+V ++N++I G  Q G   EA + F  I     +  DR          
Sbjct: 197 ELLSER-----DIV-SWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSAC 250

Query: 194 ---GNVRFKRNIVSW-------------NSMIMCYAKAGDVVSAREIFEQ--MLERDTFS 235
                + F + I  +             N++I  YAK+G V  AR I EQ  + + D  +
Sbjct: 251 ANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIA 310

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           +  +++GY+ + D+  A  +F  +  PD + W AM+ GY Q G                 
Sbjct: 311 FTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNG----------------- 353

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
                       N D   AI++F  M  EG +P+  T +++LS SS +  L+ G QIH  
Sbjct: 354 -----------LNND---AIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHAS 399

Query: 356 VTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
             ++     P + NAL TMYA+ G+I  AR +F  ++  ++ VSW +MI   A HG   E
Sbjct: 400 AIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEE 459

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           A+ELF+ M +  + P +IT++ VLSAC H GLVE+GR +F  M N + I+P + H+A +V
Sbjct: 460 AIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMV 519

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D+ GR G L++A   ++ MP EPD   WG+LL +C+V+ NV+LA+VAAE L+ +EP NS 
Sbjct: 520 DLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSG 579

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            Y  L N+Y+  G+WDDA ++R LMK+  +KK  G SWV
Sbjct: 580 AYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWV 618



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 136/537 (25%), Positives = 235/537 (43%), Gaps = 102/537 (18%)

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
           N +++ + + G   +A + F+ MP + + S + ++SG  + G+L++A +V      R   
Sbjct: 14  NNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVR--- 70

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLF-----DKI--------------PVNCDRGEG- 194
             D V ++ T+IVGY Q GR E+A K+F     DK+                   RG G 
Sbjct: 71  --DSV-SWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGK 127

Query: 195 -------NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL 247
                   +     +   NS++  YAK GD+  A+ +F++M  R+T SWN MIS +++  
Sbjct: 128 KVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCG 187

Query: 248 DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
            ++ A   F  +   D ++WN+M++G  Q G    AL FF  +                 
Sbjct: 188 RVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSI----------------- 230

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPI 366
                        ++    KPDR + +S LS  + +  L  G QIH  + +T+      +
Sbjct: 231 -------------LKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAV 277

Query: 367 NNALITMYARCGAIVEARIIFEE------------------MKL------------LK-- 394
            NALI+MYA+ G +  AR I E+                  +KL            LK  
Sbjct: 278 GNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDP 337

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-H 453
           +VV+W AMI G   +G   +A+E+FK+M S    P   T  ++LSA +    +  G+Q H
Sbjct: 338 DVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIH 397

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
             ++ +   + P + +  +L  +  + G +  A  +   +    D   W +++ A   H 
Sbjct: 398 ASAIRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHG 455

Query: 514 NVELAQVAAEALMK--VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPT 568
             E A    E ++   ++P++ T YV + +     G  +       LMK+ +   PT
Sbjct: 456 LGEEAIELFEQMLTLGIKPDHIT-YVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPT 511



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 34/202 (16%)

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG---- 410
           MV   +   V + N L+ +YA+ G  ++A  +F EM  +K   SWN ++ G A  G    
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMP-VKTTFSWNTILSGYAKQGKLEK 59

Query: 411 ---------------FAT------------EALELFKSMRSFKVLPTYITFISVLSACAH 443
                          + T            +A+++F  M   KVLPT  T  +VL++CA 
Sbjct: 60  AHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAA 119

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
            G    G++   S V + G+   +    SL+++  + G L+ A  +   M    + + W 
Sbjct: 120 TGSRGIGKK-VHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLR-NTSSWN 177

Query: 504 ALLGACRVHNNVELAQVAAEAL 525
           A++        V+LA    E L
Sbjct: 178 AMISLHMNCGRVDLALAQFELL 199


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 190/508 (37%), Positives = 284/508 (55%), Gaps = 27/508 (5%)

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSG 131
           ME A ++F+ +P  N   WNAM  G+ QN    + I  F +M G D      +   ++  
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 132 LIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
            ++   L E   V   ++K G R +          TLI  Y   G +  A ++F ++   
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANP-----FVATTLIDMYASGGAIHAAYRVFGEM--- 112

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                     +RN+++W +MI  Y    D+V+AR +F+   ERD   WNTMISGYI   D
Sbjct: 113 ---------IERNVIAWTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKD 163

Query: 249 MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           +  A  LF KMP+ D ++WN +++GYA  G++      F+ MP++N+ SWN++I G   N
Sbjct: 164 VIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRN 223

Query: 309 KDYEGAIKLFIQMQVEGEK-PDRHTFSSILSMSSGIVDLHLGMQIHQMV-TKTVIPDVPI 366
             +   +  F +M V+G   P+  T  ++LS  + +  L LG  +H    +     +V +
Sbjct: 224 GCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYV 283

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            NAL+ MYA+CG +  A  +F+ M   K+++SWN +IGG A HG   +AL LF  M+   
Sbjct: 284 RNALMDMYAKCGVVETALDVFKSMDN-KDLISWNTIIGGLAVHGHGADALNLFSHMKIAG 342

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
             P  ITFI +L AC H GLVE+G  +FKSM ++Y I PRIEH+  +VD++GR G L  A
Sbjct: 343 ENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHA 402

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
           +D I+ MP E D  +W ALLGACRV+ NVELA++A E L++ EP+N   YV+L N+Y D 
Sbjct: 403 VDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDF 462

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           GRW D   +++ M+    KK  G S ++
Sbjct: 463 GRWKDVARLKVAMRDTGFKKLPGCSLIE 490



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/474 (26%), Positives = 195/474 (41%), Gaps = 127/474 (26%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYI---SSRGSGFLEEARYLFDIMPE--------RD 59
           M  A K+FD++P+ +   WN M  GY    S +    L       D+MP         + 
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 60  CVTWN-------------------------TVISGYAKTGEMEEALRLFNSMPARNVVSW 94
           CV  N                         T+I  YA  G +  A R+F  M  RNV++W
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
            AMI+G++   D+  A   FD  P RD                                 
Sbjct: 121 TAMINGYITCCDLVTARRLFDLAPERD--------------------------------- 147

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
               +  +NT+I GY +   V  AR+LFDK+P             ++++SWN+++  YA 
Sbjct: 148 ----IVLWNTMISGYIEAKDVIRARELFDKMP------------NKDVMSWNTVLNGYAS 191

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM-------PHPDTLT- 266
            GDV++   +FE+M ER+ FSWN +I GY       E  + F +M       P+  TL  
Sbjct: 192 NGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVN 251

Query: 267 ---------------W-----------------NAMVSGYAQIGNLELALDFFKRMPQKN 294
                          W                 NA++  YA+ G +E ALD FK M  K+
Sbjct: 252 VLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKD 311

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           L+SWN++I G   +     A+ LF  M++ GE PD  TF  IL   + +  +  G    +
Sbjct: 312 LISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFK 371

Query: 355 MVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
            +T   +++P +     ++ +  R G +  A     +M +  + V W A++G C
Sbjct: 372 SMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGAC 425



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 100/298 (33%), Positives = 154/298 (51%), Gaps = 24/298 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y     +  A ++F EM +R+V++W  MI+GYI+      L  AR LFD+ PERD 
Sbjct: 92  LIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYITCCD---LVTARRLFDLAPERDI 148

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V WNT+ISGY +  ++  A  LF+ MP ++V+SWN +++G+  NGDV      F+ MP R
Sbjct: 149 VLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPER 208

Query: 121 DSASLSALVSGLIQNGELDEA----ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           +  S +AL+ G  +NG   E      R+LV      DG   +V    TL+       R+ 
Sbjct: 209 NVFSWNALIGGYTRNGCFSEVLSAFKRMLV------DG--TVVPNDATLVNVLSACARL- 259

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            A  L   + V  +       +K N+   N+++  YAK G V +A ++F+ M  +D  SW
Sbjct: 260 GALDLGKWVHVYAESHG----YKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISW 315

Query: 237 NTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRM 290
           NT+I G        +A NLF  M     +PD +T+  ++     +G +E    +FK M
Sbjct: 316 NTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSM 373


>gi|302784086|ref|XP_002973815.1| hypothetical protein SELMODRAFT_100620 [Selaginella moellendorffii]
 gi|300158147|gb|EFJ24770.1| hypothetical protein SELMODRAFT_100620 [Selaginella moellendorffii]
          Length = 564

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 182/548 (33%), Positives = 297/548 (54%), Gaps = 26/548 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y +  ++  AR  FD MP R  V+WN +++ Y  +   G + E+  LF  MPER  
Sbjct: 29  LILAYAQNGQIPLARDAFDRMPARTSVTWNTLLTAYARA---GHMPESELLFKNMPERGI 85

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           VTWN+++  YA  G +  A  LF++MP R   SWN MI G++ N    +A+  F+RMP R
Sbjct: 86  VTWNSIVEAYAHNGLLARAKTLFDAMPERTAYSWNIMIQGYVDNSRFQSALAAFERMPQR 145

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
            +AS + +++GL+  G L EA RV      R     DL  A+NT++  Y + G +  AR 
Sbjct: 146 STASWNTVLAGLVAAGHLREAERVFEATPHR-----DL-HAHNTMVSAYCKAGALHRARD 199

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +FDK+P             RN V WN+++  Y + G + +A+  F+    RD  SWN M+
Sbjct: 200 VFDKVP------------HRNFVCWNALLQAYVQNGQLSTAKATFDVSPCRDVASWNAMM 247

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
            G+     +++A  LF +MP  D ++  A+V  YA+ G++  A   F  +P ++ ++WN+
Sbjct: 248 QGFAEEGQLQDAELLFQRMPKRDVVSATALVVAYARHGHITQARALFDGLPVRDTIAWNA 307

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           MIA          A+ LF  M +E    D  + SS L   + +  L  G  IH  +  + 
Sbjct: 308 MIAAYTQAGLALDALNLFKVMDLEAVPLDHASLSSALDACATLAALREGKLIHSSILHSE 367

Query: 361 I--PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
           +   +  +  +LITMYARC  + EA+  F+ +   ++V  WN M+   + +G   E+LE+
Sbjct: 368 LFHSNTIVATSLITMYARCARLCEAKRAFDGLT-KRDVPCWNTMVAAYSQNGLFQESLEI 426

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS--MVNEYGIEPRIEHFASLVDI 476
           F++M      P   +FI +L++C+H GL+ E   +F +  +V ++G+ P ++H+  ++D+
Sbjct: 427 FRTMEVEGHKPQSASFICILTSCSHGGLLTEALWYFTALQLVEDHGVVPTVDHYICIIDL 486

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           + R G L  A +L+  MPFEPD   W ALLG C+  N+V+     A+ + +++P     Y
Sbjct: 487 LARIGWLHQAEELLNTMPFEPDSVAWMALLGGCKGQNDVQTGARVAKHVFQLQPRTPALY 546

Query: 537 VLLYNMYA 544
           VLL N +A
Sbjct: 547 VLLSNTHA 554



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 132/466 (28%), Positives = 208/466 (44%), Gaps = 30/466 (6%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           Y   G +++A   F+ +   N  SWN +I  + QNG +  A + FDRMP R S + + L+
Sbjct: 2   YGACGSLDDARTAFDRLAHPNAFSWNILILAYAQNGQIPLARDAFDRMPARTSVTWNTLL 61

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           +   + G + E + +L K     +  E  +  +N+++  Y   G +  A+ LFD +P   
Sbjct: 62  TAYARAGHMPE-SELLFK-----NMPERGIVTWNSIVEAYAHNGLLARAKTLFDAMP--- 112

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
                    +R   SWN MI  Y       SA   FE+M +R T SWNT+++G +    +
Sbjct: 113 ---------ERTAYSWNIMIQGYVDNSRFQSALAAFERMPQRSTASWNTVLAGLVAAGHL 163

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            EA  +F   PH D    N MVS Y + G L  A D F ++P +N V WN+++     N 
Sbjct: 164 REAERVFEATPHRDLHAHNTMVSAYCKAGALHRARDVFDKVPHRNFVCWNALLQAYVQNG 223

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA 369
               A   F         P R   +S  +M  G  +         +  +    DV    A
Sbjct: 224 QLSTAKATF------DVSPCRDV-ASWNAMMQGFAEEGQLQDAELLFQRMPKRDVVSATA 276

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           L+  YAR G I +AR +F+ +  +++ ++WNAMI      G A +AL LFK M    V  
Sbjct: 277 LVVAYARHGHITQARALFDGLP-VRDTIAWNAMIAAYTQAGLALDALNLFKVMDLEAVPL 335

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
            + +  S L ACA    + EG+    S+++            SL+ +  R  RL +A   
Sbjct: 336 DHASLSSALDACATLAALREGKLIHSSILHSELFHSNTIVATSLITMYARCARLCEAKRA 395

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
             G+  + D   W  ++ A   ++   L Q + E    +E E   P
Sbjct: 396 FDGLT-KRDVPCWNTMVAA---YSQNGLFQESLEIFRTMEVEGHKP 437



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 10/122 (8%)

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY  CG++ +AR  F+ +    N  SWN +I   A +G    A + F  M +     T +
Sbjct: 1   MYGACGSLDDARTAFDRLA-HPNAFSWNILILAYAQNGQIPLARDAFDRMPA----RTSV 55

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           T+ ++L+A A AG + E    FK+M      E  I  + S+V+    +G L  A  L   
Sbjct: 56  TWNTLLTAYARAGHMPESELLFKNMP-----ERGIVTWNSIVEAYAHNGLLARAKTLFDA 110

Query: 493 MP 494
           MP
Sbjct: 111 MP 112


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 238/715 (33%), Positives = 340/715 (47%), Gaps = 146/715 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +I+ YVK R +  A ++F EMP+RDV+SWN +IS Y      GF ++A  LF+ M     
Sbjct: 68  LINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQ---GFKKKAFQLFEEMQNAGF 124

Query: 57  -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                                              +RD    N+++S Y K G++  A +
Sbjct: 125 IPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQ 184

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F  +  R+VVS+N M+  + Q   V   +  F +M       D  +   L+        
Sbjct: 185 VFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSM 244

Query: 138 LDEAARV----------------------LVKCGSRCDGGEDL-------VRAYNTLIVG 168
           LDE  R+                       V+CG      +         V  YN LI  
Sbjct: 245 LDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAA 304

Query: 169 YGQRGRVEEA-----RKLFDKIPVN----------CDRGEGNVRFK------------RN 201
             Q G   EA     R   D + +N          C   +     K             +
Sbjct: 305 LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSD 364

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV---- 257
           +   N++I  YA+ GD+  ARE+F  M +RD  SWN +I+GY    D  EA  L+     
Sbjct: 365 VQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQS 424

Query: 258 --------------------------KMPHPDTLT---------WNAMVSGYAQIGNLEL 282
                                     KM H D L           NA+++ Y + G+L  
Sbjct: 425 EGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLME 484

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A + F+    ++++SWNSMIAG   +  YE A KLF +MQ E  +PD  TF+S+LS    
Sbjct: 485 AQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKN 544

Query: 343 IVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
              L LG QIH  +T++ +  DV + NALI MY RCG++ +AR +F  ++  ++V+SW A
Sbjct: 545 PEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQH-RDVMSWTA 603

Query: 402 MIGGCASHGFATEALELFKSMRS--FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           MIGGCA  G   +A+ELF  M++  F+  P   TF S+LSAC HAGLV EG Q F SM +
Sbjct: 604 MIGGCADQGEDMKAIELFWQMQNEGFRP-PDGSTFTSILSACNHAGLVLEGYQIFSSMES 662

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
           EYG+ P IEH+  LV ++GR  R ++A  LI  MPF PD AVW  LLGACR+H N+ LA+
Sbjct: 663 EYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAE 722

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            AA   +K+   N   Y+LL N+YA  GRWDD  ++R +M+   I+K  G SW++
Sbjct: 723 HAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIE 777



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 142/520 (27%), Positives = 251/520 (48%), Gaps = 56/520 (10%)

Query: 44  FLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMIS 99
            L EA+ +   M E     D    N +I+ Y K   + +A ++F  MP R+V+SWN++IS
Sbjct: 42  LLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLIS 101

Query: 100 GFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LVKCGSRC 152
            + Q G    A + F+ M       +  +  ++++      EL+   ++   ++K G + 
Sbjct: 102 CYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQR 161

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
           D      R  N+L+  YG+ G +  AR++F  I              R++VS+N+M+  Y
Sbjct: 162 D-----PRVQNSLLSMYGKCGDLPRARQVFAGIS------------PRDVVSYNTMLGLY 204

Query: 213 AKAGDVVSAREIFEQMLER-------------DTFSWNTMIS--GYIHVLDMEEASNLFV 257
           A+   V     +F QM                D F+  +M+     IH L +EE  N   
Sbjct: 205 AQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLN--- 261

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                D     A+V+   + G+++ A   FK +  +++V +N++IA    +     A + 
Sbjct: 262 ----SDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQ 317

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYAR 376
           + +M+ +G   +R T+ SIL+  S    L  G  IH  +++     DV I NALI+MYAR
Sbjct: 318 YYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYAR 377

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG + +AR +F  M   ++++SWNA+I G A      EA+ L+K M+S  V P  +TF+ 
Sbjct: 378 CGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLH 436

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           +LSACA++    +G+   + ++   GI+       +L+++  R G L +A ++ +G    
Sbjct: 437 LLSACANSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR 495

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALM--KVEPENST 534
            D   W +++     H + E A    + +   ++EP+N T
Sbjct: 496 -DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNIT 534



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 152/294 (51%), Gaps = 11/294 (3%)

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALD 285
           E D  ++  ++        + EA  +  +M      PD    N +++ Y +  ++  A  
Sbjct: 24  ETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQ 83

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDY-EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
            FK MP+++++SWNS+I+ C   + + + A +LF +MQ  G  P++ T+ SIL+      
Sbjct: 84  VFKEMPRRDVISWNSLIS-CYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 345 DLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           +L  G +IH  + K      P + N+L++MY +CG +  AR +F  +   ++VVS+N M+
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGIS-PRDVVSYNTML 201

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
           G  A   +  E L LF  M S  + P  +T+I++L A     +++EG++  K  V E G+
Sbjct: 202 GLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE-GL 260

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH-NNVE 516
              I    +LV +  R G ++ A    KG+  + D  V+ AL+ A   H +NVE
Sbjct: 261 NSDIRVGTALVTMCVRCGDVDSAKQAFKGIA-DRDVVVYNALIAALAQHGHNVE 313


>gi|2245038|emb|CAB10457.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268435|emb|CAB80955.1| hypothetical protein [Arabidopsis thaliana]
          Length = 851

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 196/518 (37%), Positives = 291/518 (56%), Gaps = 82/518 (15%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN-GDVANAIEFFDRMPGRDS 122
           N +I+   ++G+++ ALR+F+ M A+N ++WN+++ G  ++   +  A + FD +P  D+
Sbjct: 65  NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDT 124

Query: 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
            S                                     YN ++  Y +    E+A+  F
Sbjct: 125 FS-------------------------------------YNIMLSCYVRNVNFEKAQSFF 147

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
           D++P             ++  SWN+MI  YA+ G++  ARE+F  M+E++  SWN MISG
Sbjct: 148 DRMPF------------KDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISG 195

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSM 301
           YI   D+E+AS+ F   P    + W AM++GY +   +ELA   FK M   KNLV+WN+M
Sbjct: 196 YIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAM 255

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
           I+G   N   E  +KLF  M  EG +P+          SSG+    LG  +         
Sbjct: 256 ISGYVENSRPEDGLKLFRAMLEEGIRPN----------SSGLSSALLGCTL--------- 296

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
                  +LI+MY +CG + +A  +FE MK  K+VV+WNAMI G A HG A +AL LF+ 
Sbjct: 297 ------TSLISMYCKCGELGDAWKLFEVMKK-KDVVAWNAMISGYAQHGNADKALCLFRE 349

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M   K+ P +ITF++VL AC HAGLV  G  +F+SMV +Y +EP+ +H+  +VD++GR G
Sbjct: 350 MIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAG 409

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
           +LE+A+ LI+ MPF P  AV+G LLGACRVH NVELA+ AAE L+++  +N+  YV L N
Sbjct: 410 KLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLAN 469

Query: 542 MYADVGRWDDANEVRLLMKSNNI-----KKPTGYSWVD 574
           +YA   RW+D   VR  MK +N+      K  GYSW++
Sbjct: 470 IYASKNRWEDVARVRKRMKESNVVKVERVKVPGYSWIE 507



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 192/369 (52%), Gaps = 41/369 (11%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGY 70
           M +A +LFDE+P+ D  S+N+M+S Y+  R   F E+A+  FD MP +D  +WNT+I+GY
Sbjct: 109 MMEAHQLFDEIPEPDTFSYNIMLSCYV--RNVNF-EKAQSFFDRMPFKDAASWNTMITGY 165

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
           A+ GEME+A  LF SM  +N VSWNAMISG+++ GD+  A  FF   P R   + +A+++
Sbjct: 166 ARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMIT 225

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           G ++  ++ E A  + K        ++LV  +N +I GY +  R E+  KLF  +     
Sbjct: 226 GYMKAKKV-ELAEAMFK---DMTVNKNLV-TWNAMISGYVENSRPEDGLKLFRAML---- 276

Query: 191 RGEGNVRFKRNIVS-------WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
             E  +R   + +S         S+I  Y K G++  A ++FE M ++D  +WN MISGY
Sbjct: 277 --EEGIRPNSSGLSSALLGCTLTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGY 334

Query: 244 IHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRM-------PQ 292
               + ++A  LF +M      PD +T+ A++      G + + + +F+ M       PQ
Sbjct: 335 AQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQ 394

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
            +   +  M+         E A+KL   M     +P    F ++L    G   +H  +++
Sbjct: 395 PD--HYTCMVDLLGRAGKLEEALKLIRSMPF---RPHAAVFGTLL----GACRVHKNVEL 445

Query: 353 HQMVTKTVI 361
            +   + ++
Sbjct: 446 AEFAAEKLL 454



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 194/437 (44%), Gaps = 71/437 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+  V+  ++  A ++F  M  ++ ++WN ++ G   S+    + EA  LFD +PE D 
Sbjct: 67  IIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGI--SKDPSRMMEAHQLFDEIPEPDT 124

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            ++N ++S Y +    E+A   F+ MP ++  SWN MI+G+ + G++  A E F  M  +
Sbjct: 125 FSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEK 184

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++SG I+ G+L++A+        R       V A+  +I GY +  +VE A  
Sbjct: 185 NEVSWNAMISGYIECGDLEKASHFFKVAPVRG------VVAWTAMITGYMKAKKVELAEA 238

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT------- 233
           +F  + VN           +N+V+WN+MI  Y +        ++F  MLE          
Sbjct: 239 MFKDMTVN-----------KNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGL 287

Query: 234 ------FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
                  +  ++IS Y    ++ +A  LF  M   D + WNAM+SGYAQ GN + AL  F
Sbjct: 288 SSALLGCTLTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLF 347

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
           + M    +                               +PD  TF ++L   +    ++
Sbjct: 348 REMIDNKI-------------------------------RPDWITFVAVLLACNHAGLVN 376

Query: 348 LGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
           +GM   + + +   V P       ++ +  R G + EA  +   M    +   +  ++G 
Sbjct: 377 IGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGA 436

Query: 406 CASHG------FATEAL 416
           C  H       FA E L
Sbjct: 437 CRVHKNVELAEFAAEKL 453



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 146/366 (39%), Gaps = 60/366 (16%)

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA------------------------ 269
           F  N +I+  +   D++ A  +F  M   +T+TWN+                        
Sbjct: 62  FPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPE 121

Query: 270 --------MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
                   M+S Y +  N E A  FF RMP K+  SWN+MI G     + E A +LF  M
Sbjct: 122 PDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSM 181

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIV 381
             + E        S  +M SG ++     +         +  V    A+IT Y +   + 
Sbjct: 182 MEKNE-------VSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVE 234

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
            A  +F++M + KN+V+WNAMI G   +    + L+LF++M    + P      S L  C
Sbjct: 235 LAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGC 294

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV---------GRHGRLEDAMDLIKG 492
               L+            E G   ++       D+V          +HG  + A+ L + 
Sbjct: 295 TLTSLIS-----MYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFRE 349

Query: 493 M---PFEPDKAVWGALLGACRVHNNVELAQVAAEALM---KVEPENSTPYVLLYNMYADV 546
           M      PD   + A+L AC     V +     E+++   KVEP+    Y  + ++    
Sbjct: 350 MIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDH-YTCMVDLLGRA 408

Query: 547 GRWDDA 552
           G+ ++A
Sbjct: 409 GKLEEA 414



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 118/290 (40%), Gaps = 67/290 (23%)

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQM--------------------------QVEG 325
           Q  +   N +IA C  + D +GA+++F  M                          Q+  
Sbjct: 58  QDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFD 117

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARI 385
           E P+  TFS  + +S  + +++   +      +    D    N +IT YAR G + +AR 
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFE-KAQSFFDRMPFKDAASWNTMITGYARRGEMEKARE 176

Query: 386 IFEEMKLLKNVVSWNAMIGG---C-----ASHGF-------------------ATEALEL 418
           +F  M + KN VSWNAMI G   C     ASH F                     + +EL
Sbjct: 177 LFYSM-MEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVEL 235

Query: 419 FKSM-RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA------ 471
            ++M +   V    +T+ +++S        E+G + F++M+ E GI P     +      
Sbjct: 236 AEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEE-GIRPNSSGLSSALLGC 294

Query: 472 ---SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
              SL+ +  + G L DA  L + M  + D   W A++     H N + A
Sbjct: 295 TLTSLISMYCKCGELGDAWKLFEVMK-KKDVVAWNAMISGYAQHGNADKA 343


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 184/522 (35%), Positives = 306/522 (58%), Gaps = 16/522 (3%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D    N +++ YAK+GE+  A +LF+ M  R+  SWNAM+S + ++G V +    FD MP
Sbjct: 57  DTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMP 116

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
            RDS S + ++SG   NG    A  V ++     +G +     + +++    Q   +   
Sbjct: 117 SRDSVSYNTVISGFAGNGRGGPALGVFLRMQK--EGLKPTEYTHVSVLNACTQLLDLRRG 174

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT 238
           +++  +I + C+ G        N+   N++   YA+ G++  AR +F++M+ R+  +WN 
Sbjct: 175 KQIHGRIII-CNLGG-------NVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNL 226

Query: 239 MISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
           MISGY+     E+  +LF +M      PD +T ++++  Y Q G ++ A   F  + +K+
Sbjct: 227 MISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKD 286

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH- 353
            V W  MI GC  N   E A+ LF +M +E  +PD +T SS++S  + +  L+ G  +H 
Sbjct: 287 EVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHG 346

Query: 354 QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
           +     V  D+ +++AL+ MY +CG   +A  IF  M+  +NVVSWN+MIGG A +G   
Sbjct: 347 KAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQT-RNVVSWNSMIGGYALNGQDL 405

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           EAL L+++M    + P  +TF+ VLSAC HAGLVEEG+++F SM +++G+EP  +H+A +
Sbjct: 406 EALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACM 465

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           V++ GR G ++ A+DLI  M  EP+  +W  +L  C +  +++  ++AA  L+++ P N+
Sbjct: 466 VNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNA 525

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
            PY++L NMYA  GRW D   +R LMKS ++KK + YSW++ 
Sbjct: 526 VPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEI 567



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 209/461 (45%), Gaps = 70/461 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y K  E++ ARKLFDEM QRD  SWN M+S Y     SG +E+ R +FD MP RD 
Sbjct: 64  LLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAK---SGLVEDLRVIFDNMPSRDS 120

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR------------------------------- 89
           V++NTVISG+A  G    AL +F  M                                  
Sbjct: 121 VSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGR 180

Query: 90  --------NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                   NV   NA+   + + G++  A   FDRM  R+  + + ++SG ++N + ++ 
Sbjct: 181 IIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKC 240

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +  +     +   D V A ++++  Y Q G ++EARK+F           G +R +++
Sbjct: 241 IDLFHEMQVS-NLKPDQVTA-SSVLGAYIQAGYIDEARKVF-----------GEIR-EKD 286

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEAS---- 253
            V W  MI+  A+ G    A  +F +ML      D ++ ++++S    +  +        
Sbjct: 287 EVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHG 346

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
             F+   + D L  +A+V  Y + G    A   F  M  +N+VSWNSMI G   N     
Sbjct: 347 KAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLE 406

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHLGMQIH-QMVTKTVIPDVPINNA- 369
           A+ L+  M  E  KPD  TF  +LS  + +G+V+   G +    M  +  +   P + A 
Sbjct: 407 ALSLYENMLEENLKPDSVTFVGVLSACVHAGLVE--EGKEYFCSMSDQHGLEPTPDHYAC 464

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           ++ ++ R G + +A  +   M    N + W  ++  C   G
Sbjct: 465 MVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKG 505



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 20/162 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++  Y K      A  +F  M  R+VVSWN MI GY     +G   EA  L++ M E   
Sbjct: 363 LVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYAL---NGQDLEALSLYENMLEENL 419

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
             D VT+  V+S     G +EE    F SM  ++ +      +  M++ F ++G +  A+
Sbjct: 420 KPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAV 479

Query: 112 EFFDRMPGRDSASL------SALVSGLIQNGELDEAARVLVK 147
           +    M    ++ +        ++ G I++GE+  AAR L++
Sbjct: 480 DLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEM--AARCLIE 519


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 183/521 (35%), Positives = 298/521 (57%), Gaps = 16/521 (3%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D    N ++  YAK G++ +A  LF+ M  R+  SWNA++S + ++G + N    FDRMP
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
            RDS S +  ++G   N    E+  +  +     +G E       +++    Q   +   
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQR--EGFEPTEYTIVSILNASAQLLDLRYG 174

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT 238
           +++   I V          F  N+  WN++   YAK G++  AR +F+ + +++  SWN 
Sbjct: 175 KQIHGSIIVR--------NFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNL 226

Query: 239 MISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
           MISGY      E+   L  +M      PD +T + +++ Y Q G ++ A   F    +K+
Sbjct: 227 MISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKD 286

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH- 353
           +V W +M+ G   N   E A+ LF +M +E  +PD +T SS++S  + +  LH G  +H 
Sbjct: 287 IVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHG 346

Query: 354 QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
           + +   +  ++ +++ALI MY++CG I +AR +F  M   +NVVSWNAMI GCA +G   
Sbjct: 347 KSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPT-RNVVSWNAMIVGCAQNGHDK 405

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           +ALELF++M   K  P  +TFI +LSAC H   +E+G+++F S+ N++G+ P ++H+A +
Sbjct: 406 DALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACM 465

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           V+++GR GR+E A+ LIK M  +PD  +W  LL  C    ++  A+VAA  L +++P  +
Sbjct: 466 VNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIA 525

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            PY++L NMYA +GRW D   VR LMKS N+KK  G+SW++
Sbjct: 526 VPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIE 566



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/455 (23%), Positives = 190/455 (41%), Gaps = 89/455 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++S Y K   +   +  FD MP RD VS+N  I+G+    G+   +E+  LF  M     
Sbjct: 95  LLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGF---SGNSCPQESLELFKRMQREGF 151

Query: 59  -------------------------------------DCVTWNTVISGYAKTGEMEEALR 81
                                                +   WN +   YAK GE+E+A  
Sbjct: 152 EPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARW 211

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD--RMPGR--DSASLSALVSGLIQNGE 137
           LF+ +  +N+VSWN MISG+ +NG     I      R+ G   D  ++S +++   Q G 
Sbjct: 212 LFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGR 271

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           +DEA RV  +   +     D+V  +  ++VGY + GR E+A  LF+++ +  +  E +  
Sbjct: 272 VDEARRVFSEFKEK-----DIV-CWTAMMVGYAKNGREEDALLLFNEMLL--EHIEPDSY 323

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
              ++VS +   +     G  V  + I    L  +    + +I  Y     +++A ++F 
Sbjct: 324 TLSSVVS-SCAKLASLHHGQAVHGKSILAG-LNNNLLVSSALIDMYSKCGFIDDARSVFN 381

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
            MP  + ++WNAM+ G AQ G+ + AL+ F+ M Q+                        
Sbjct: 382 LMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKF---------------------- 419

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYA 375
                    KPD  TF  ILS       +  G +    ++    + P +     ++ +  
Sbjct: 420 ---------KPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLG 470

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           R G I +A  + + M    + + W+ ++  C++ G
Sbjct: 471 RTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKG 505


>gi|325260820|gb|ADZ04639.1| hypothetical protein [Oryza glaberrima]
          Length = 674

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 201/634 (31%), Positives = 339/634 (53%), Gaps = 72/634 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y +R  +  A+ LFD+MP RDV+SW  +++ Y      G L  AR +FD MP R+ 
Sbjct: 44  LLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADG---GDLASARLVFDDMPRRNA 100

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW-------------------------- 94
            +WN ++S Y +      A  LF  MPA+N VS+                          
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPWQ 160

Query: 95  -------NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
                  NA+++G+L+ G++A A+  F+ M  RD  S SA+V GL ++G + EA RV   
Sbjct: 161 WRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDA 220

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF-------------------DKIPVN 188
              R       V ++ ++I GY +RG   +   LF                   D   V 
Sbjct: 221 MPERN------VVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAVA 274

Query: 189 CDRGEG--------NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
               EG        ++ F+ +I   +S+I+ Y++ G +V A+  F+ M ++D  SWN++I
Sbjct: 275 SLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLI 334

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    +EEA  LF  M   D ++W +MV G+A  G +  +++ F++MP K+ V+W +
Sbjct: 335 TGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTA 394

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKT 359
           +I+   TN DY  A++ F +M  EG KP+   FS +LS  + +  L+ G Q H   +   
Sbjct: 395 IISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMG 454

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
            + D  ++ +L++MYA+CG + EA  +F  +    ++++ N+MI     HGF  +AL+LF
Sbjct: 455 WVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISN-PSLIAINSMITAFVQHGFVEDALKLF 513

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M++    P ++TF+ +L+ CA AG V++G  +F+SM   YG+EP  EH+  +VD++GR
Sbjct: 514 TKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGR 573

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G L +A+++I  MP       W ALL A  +H+N+  A++AA+ L++ +P ++T Y +L
Sbjct: 574 AGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYDATAYTVL 633

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
             M++  G  +D   ++++  SN   K  GYS +
Sbjct: 634 SRMFSSAGM-EDEEMLKVVQLSNLASKRPGYSLI 666



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 189/395 (47%), Gaps = 53/395 (13%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +++ Y + G + +A  LF+ MP+R+V+SW A+++ +   GD+A+A   FD MP R++ 
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S +AL+S  ++      A  +  K  ++         +Y  +I G  +   + EA  +++
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAKN------AVSYGAIISGLAKAEMLHEAELVYE 155

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           ++P             R+ V  N+++  Y + G++  A  +FE M  RD  SW+ M+ G 
Sbjct: 156 EMPWQW----------RDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGL 205

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                + EA  +F  MP  + ++W +M+ GY + G           M +  L+       
Sbjct: 206 CKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRG-----------MCRDGLL------- 247

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP- 362
                        LF+ M+ EG + +  T S  L   +       G+QIH ++       
Sbjct: 248 -------------LFLNMRREGVQVNTTTLSVALDACAVASLAREGIQIHNLIISMGFEL 294

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           D+ + +++I MY+R G +V+A+  F+ M+  K++VSWN++I G   H    EA  LFK M
Sbjct: 295 DIFLGDSIIIMYSRFGWMVDAKRAFDCMQ-QKDIVSWNSLITGYVQHDMVEEAHVLFKLM 353

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
                    +++ S++   A+ G + E  + F+ M
Sbjct: 354 HQ----KDAVSWTSMVVGFANRGWMRESVELFEQM 384



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 121/313 (38%), Gaps = 66/313 (21%)

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           NA+++ Y + G L  A   F +MP ++++SW +++       D   A  +F  M      
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMP-RRNA 100

Query: 328 PDRHTFSSI----------------------LSMSSGIVDLHLGMQIHQMVTKTVIPDVP 365
           P  +   S+                      +S  + I  L     +H+   + V  ++P
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHE--AELVYEEMP 158

Query: 366 I-------NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA--- 415
                   +NAL+  Y R G +  A  +FE M  +++V+SW+AM+ G   HG  +EA   
Sbjct: 159 WQWRDPVGSNALMAGYLRVGELAMALRVFEGMT-VRDVISWSAMVDGLCKHGSVSEARRV 217

Query: 416 ----------------------------LELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
                                       L LF +MR   V     T    L ACA A L 
Sbjct: 218 FDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAVASLA 277

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
            EG Q   +++   G E  I    S++ +  R G + DA      M  + D   W +L+ 
Sbjct: 278 REGIQ-IHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQ-QKDIVSWNSLIT 335

Query: 508 ACRVHNNVELAQV 520
               H+ VE A V
Sbjct: 336 GYVQHDMVEEAHV 348


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 202/578 (34%), Positives = 311/578 (53%), Gaps = 91/578 (15%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L++AR LFD MP+R+  TWN++IS   K+G ++EA RLF SMP  +  SWN+M+SGF Q+
Sbjct: 66  LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125

Query: 105 GDVANAIEFFDRMPGRD--------SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
                ++E+F +M   D         ++LSA  +GL+      +   ++ K     D   
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSA-CAGLMDLNMGTQVHALVSKSRYSTD--- 181

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
             V   + LI  Y + G V  A ++F  +             +RN+V+WNS+I CY + G
Sbjct: 182 --VYMGSALIDMYSKCGSVACAEEVFSGM------------IERNLVTWNSLITCYEQNG 227

Query: 217 DVVSAREIFEQMLER----------------------------------------DTFSW 236
               A E+F +M++                                         D    
Sbjct: 228 PASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLG 287

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           N ++  Y     + EA  +F +M   + ++  +MVSGYA+  +++ A   F +M Q+N+V
Sbjct: 288 NALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVV 347

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SWN++IAG   N + E A++LF  ++ E   P  +TF ++L                   
Sbjct: 348 SWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLK------------------ 389

Query: 357 TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
                 D+ + N+LI MY +CG+I +   +FE+MK  ++ VSWNA+I G A +G+  EAL
Sbjct: 390 -----SDIFVGNSLIDMYMKCGSIEDGSRVFEKMKE-RDCVSWNAIIVGYAQNGYGAEAL 443

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
           ++F+ M      P ++T I VL AC+HAGLVEEGR +F SM  E+G+ P  +H+  +VD+
Sbjct: 444 QIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDL 502

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           +GR G L +A +LI+ MP  PD  VWG+LL AC+VH N+E+ + AAE L++++P NS PY
Sbjct: 503 LGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPY 562

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           VLL NMYA++GRW D   VR LM+   + K  G SW++
Sbjct: 563 VLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIE 600



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 186/363 (51%), Gaps = 12/363 (3%)

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           A+   +V AR +  Q    + F  N +I  Y     +++A  LF +MP  +T TWN+++S
Sbjct: 31  ARGTRLVHARILMTQ-FSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLIS 89

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
              + G L+ A   F  MP+ +  SWNSM++G   +  +E +++ F++M  E    + ++
Sbjct: 90  VLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYS 149

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMK 391
           F S LS  +G++DL++G Q+H +V+K+    DV + +ALI MY++CG++  A  +F  M 
Sbjct: 150 FGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGM- 208

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
           + +N+V+WN++I     +G A+EALE+F  M    + P  +T  SV+SACA    ++EG 
Sbjct: 209 IERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGL 268

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
           Q    +V        +    +LVD+  +  ++ +A  +   M      +    + G  R 
Sbjct: 269 QIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARA 328

Query: 512 HNNVELAQVAAEALM--KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
                 A V A   M  K+   N   +  L   Y   G  ++A  +  L+K  +I  PT 
Sbjct: 329 ------ASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESI-WPTH 381

Query: 570 YSW 572
           Y++
Sbjct: 382 YTF 384


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 190/545 (34%), Positives = 317/545 (58%), Gaps = 22/545 (4%)

Query: 39  SRGSGFLEEARYL----FDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
           +R + F++  R       ++   +D    N ++  YAK G++ +A  +F++M  R+V SW
Sbjct: 33  ARANDFIQAKRLQSHMELNLFQPKDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSW 92

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
           N ++S + + G V N    FD+MP RDS S + L++    NG   +A +VLV+     DG
Sbjct: 93  NTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQE--DG 150

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
            +    ++   +    Q   +   +++  +I V  D GE       N    N+M   YAK
Sbjct: 151 FQPTQYSHVNALQACSQLLDLRHGKQIHGRIVV-ADLGE-------NTFVRNAMTDMYAK 202

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAM 270
            GD+  AR +F+ M++++  SWN MISGY+ + +  E  +LF +M      PD +T + +
Sbjct: 203 CGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNV 262

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
           ++ Y + G ++ A + F ++P+K+ + W +MI G   N   E A  LF  M     KPD 
Sbjct: 263 LNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDS 322

Query: 331 HTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEE 389
           +T SS++S  + +  L+ G  +H ++V   +   + +++AL+ MY +CG  ++AR+IFE 
Sbjct: 323 YTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFET 382

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           M  ++NV++WNAMI G A +G   EAL L++ M+     P  ITF+ VLSAC +A +V+E
Sbjct: 383 MP-IRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKE 441

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           G+++F S ++E+GI P ++H+A ++ ++GR G ++ A+DLI+GMP EP+  +W  LL  C
Sbjct: 442 GQKYFDS-ISEHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVC 500

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
               +++ A++AA  L +++P N+ PY++L N+YA  GRW D   VR LMK  N KK   
Sbjct: 501 -AKGDLKNAELAASHLFELDPRNAGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKKFAA 559

Query: 570 YSWVD 574
           YSWV+
Sbjct: 560 YSWVE 564



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 186/372 (50%), Gaps = 20/372 (5%)

Query: 205 WNSMIMCYAKAGDVVSAREIFEQM-----LERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
           +  +++  A+A D + A+ +   M       +D+F  N ++  Y     + +A N+F  M
Sbjct: 25  YTRLVLHCARANDFIQAKRLQSHMELNLFQPKDSFIHNQLLHLYAKFGKLSDAQNVFDNM 84

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
              D  +WN ++S YA++G +E     F +MP ++ VS+N++IA   +N     A+K+ +
Sbjct: 85  TKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLV 144

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCG 378
           +MQ +G +P +++  + L   S ++DL  G QIH ++V   +  +  + NA+  MYA+CG
Sbjct: 145 RMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCG 204

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
            I +AR++F+ M + KNVVSWN MI G    G   E + LF  M+   + P  +T  +VL
Sbjct: 205 DIDKARLLFDGM-IDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVL 263

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG--RHGRLEDAMDLIKGM--- 493
           +A    G V++ R  F  +       P+ +       IVG  ++GR EDA  L   M   
Sbjct: 264 NAYFRCGRVDDARNLFIKL-------PKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRR 316

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY-VLLYNMYADVGRWDDA 552
             +PD     +++ +C    ++   QV    ++ +  +NS      L +MY   G   DA
Sbjct: 317 NVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDA 376

Query: 553 NEVRLLMKSNNI 564
             +   M   N+
Sbjct: 377 RVIFETMPIRNV 388



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 126/491 (25%), Positives = 217/491 (44%), Gaps = 74/491 (15%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y K  +++ A+ +FD M +RDV SWN ++S Y      G +E    +FD MP RD V++N
Sbjct: 68  YAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAK---MGMVENLHVVFDQMPYRDSVSYN 124

Query: 65  TVISGYAKTGEMEEALRLF----------------NSMPA-------------------- 88
           T+I+ +A  G   +AL++                 N++ A                    
Sbjct: 125 TLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVA 184

Query: 89  ---RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
               N    NAM   + + GD+  A   FD M  ++  S + ++SG ++ G  +E   + 
Sbjct: 185 DLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLF 244

Query: 146 VKCGSRCDG-GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
            +   +  G   DLV   N L   Y + GRV++AR LF K+P            K++ + 
Sbjct: 245 NE--MQLSGLKPDLVTVSNVL-NAYFRCGRVDDARNLFIKLP------------KKDEIC 289

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           W +MI+ YA+ G    A  +F  ML R    D+++ ++M+S    +  +     +  K+ 
Sbjct: 290 WTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVV 349

Query: 261 ----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
                   L  +A+V  Y + G    A   F+ MP +N+++WN+MI G   N     A+ 
Sbjct: 350 VMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALT 409

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYA 375
           L+ +MQ E  KPD  TF  +LS       +  G +    +++  + P +     +IT+  
Sbjct: 410 LYERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSISEHGIAPTLDHYACMITLLG 469

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP----TY 431
           R G++ +A  + + M    N   W+ ++  CA        L    +   F++ P     Y
Sbjct: 470 RSGSVDKAVDLIQGMPHEPNYRIWSTLLSVCAKGDLKNAELA---ASHLFELDPRNAGPY 526

Query: 432 ITFISVLSACA 442
           I   ++ +AC 
Sbjct: 527 IMLSNLYAACG 537



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 162/322 (50%), Gaps = 34/322 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           M   Y K  ++ KAR LFD M  ++VVSWN+MISGY+     G   E  +LF+ M     
Sbjct: 196 MTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVK---MGNPNECIHLFNEMQLSGL 252

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           + D VT + V++ Y + G +++A  LF  +P ++ + W  MI G+ QNG   +A   F  
Sbjct: 253 KPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGD 312

Query: 117 MPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
           M  R    DS ++S++VS   +   L     V  K      G ++ +   + L+  Y + 
Sbjct: 313 MLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVM--GIDNSMLVSSALVDMYCKC 370

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER- 231
           G   +AR +F+ +P+            RN+++WN+MI+ YA+ G V+ A  ++E+M +  
Sbjct: 371 GVTLDARVIFETMPI------------RNVITWNAMILGYAQNGQVLEALTLYERMQQEN 418

Query: 232 ---DTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELAL 284
              D  ++  ++S  I+   ++E    F  +      P    +  M++   + G+++ A+
Sbjct: 419 FKPDNITFVGVLSACINADMVKEGQKYFDSISEHGIAPTLDHYACMITLLGRSGSVDKAV 478

Query: 285 DFFKRMPQK-NLVSWNSMIAGC 305
           D  + MP + N   W+++++ C
Sbjct: 479 DLIQGMPHEPNYRIWSTLLSVC 500


>gi|115474659|ref|NP_001060926.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|42408463|dbj|BAD09644.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50725835|dbj|BAD33365.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113622895|dbj|BAF22840.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|215704880|dbj|BAG94908.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215712334|dbj|BAG94461.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 674

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 202/634 (31%), Positives = 342/634 (53%), Gaps = 72/634 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y +R  +  A+ LFD+MP RDV+SW  +++ Y      G L  AR +FD MP R+ 
Sbjct: 44  LLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADG---GDLASARLVFDDMPRRNA 100

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW-------------------------- 94
            +WN ++S Y +      A  LF  MPA+N VS+                          
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPWQ 160

Query: 95  -------NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
                  NA+++G+L+ G++A A+  F+ M  RD  S SA+V GL ++G + EA RV   
Sbjct: 161 WRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDA 220

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF-----DKIPVN----------CDRG 192
              R       V ++ ++I GY +RG   +   LF     + + VN          C   
Sbjct: 221 MPERN------VVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAA 274

Query: 193 ----EG--------NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
               EG        ++ F+ +I   +S+I+ Y++ G +V A+  F+ M ++D  SWN++I
Sbjct: 275 SLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLI 334

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    +EEA  LF  M   D ++W +MV G+A  G +  +++ F++MP K+ V+W +
Sbjct: 335 TGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTA 394

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKT 359
           +I+   TN DY  A++ F +M  EG KP+   FS +LS  + +  L+ G Q H   +   
Sbjct: 395 IISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMG 454

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
            + D  ++ +L++MYA+CG + EA  +F  +    ++++ N+MI     HGF  +AL+LF
Sbjct: 455 WVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISN-PSLIAINSMITAFVQHGFVEDALKLF 513

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M++    P ++TF+ +L+ CA AG V++G  +F+SM   YG+EP  EH+  +VD++GR
Sbjct: 514 TKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGR 573

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G L +A+++I  MP       W ALL A  +H+N+  A++AA+ L++ +P ++T Y +L
Sbjct: 574 AGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYDATAYTVL 633

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
             M++  G  +D   ++++  SN   K  GYS +
Sbjct: 634 SRMFSSAGM-EDEEMLKVVQLSNLASKRPGYSLI 666



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 189/395 (47%), Gaps = 53/395 (13%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +++ Y + G + +A  LF+ MP+R+V+SW A+++ +   GD+A+A   FD MP R++ 
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S +AL+S  ++      A  +  K  ++         +Y  +I G  +   + EA  +++
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAKN------AVSYGAIISGLAKAEMLHEAELVYE 155

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           ++P             R+ V  N+++  Y + G++  A  +FE M  RD  SW+ M+ G 
Sbjct: 156 EMPWQW----------RDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGL 205

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                + EA  +F  MP  + ++W +M+ GY + G           M +  L+       
Sbjct: 206 CKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRG-----------MCRDGLL------- 247

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP- 362
                        LF+ M+ EG + +  T S  L   +       G+QIH ++       
Sbjct: 248 -------------LFLNMRREGVQVNTTTLSVALDACAAASLAREGIQIHNLIISMGFEL 294

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           D+ + +++I MY+R G +V+A+  F+ M+  K++VSWN++I G   H    EA  LFK M
Sbjct: 295 DIFLGDSIIIMYSRFGWMVDAKRAFDCMQ-QKDIVSWNSLITGYVQHDMVEEAHVLFKLM 353

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
                    +++ S++   A+ G + E  + F+ M
Sbjct: 354 HQ----KDAVSWTSMVVGFANRGWMRESVELFEQM 384



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 121/313 (38%), Gaps = 66/313 (21%)

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           NA+++ Y + G L  A   F +MP ++++SW +++       D   A  +F  M      
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMP-RRNA 100

Query: 328 PDRHTFSSI----------------------LSMSSGIVDLHLGMQIHQMVTKTVIPDVP 365
           P  +   S+                      +S  + I  L     +H+   + V  ++P
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHE--AELVYEEMP 158

Query: 366 I-------NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA--- 415
                   +NAL+  Y R G +  A  +FE M  +++V+SW+AM+ G   HG  +EA   
Sbjct: 159 WQWRDPVGSNALMAGYLRVGELAMALRVFEGMT-VRDVISWSAMVDGLCKHGSVSEARRV 217

Query: 416 ----------------------------LELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
                                       L LF +MR   V     T    L ACA A L 
Sbjct: 218 FDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLA 277

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
            EG Q   +++   G E  I    S++ +  R G + DA      M  + D   W +L+ 
Sbjct: 278 REGIQ-IHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQ-QKDIVSWNSLIT 335

Query: 508 ACRVHNNVELAQV 520
               H+ VE A V
Sbjct: 336 GYVQHDMVEEAHV 348


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 193/520 (37%), Positives = 288/520 (55%), Gaps = 41/520 (7%)

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD--------- 121
           A    M  A +LF+ +P  N+  WN+M  G+ Q+      +  F +M G D         
Sbjct: 81  ATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFP 140

Query: 122 -----SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
                   ++AL+ G       ++    L+KCG R   G   V    TLI  Y   G V 
Sbjct: 141 VVLKSCGKINALIEG-------EQVHCFLIKCGFR---GNPFVG--TTLIDMYSAGGTVG 188

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           +A K+F ++            F+RN+V+W SMI  Y  + D+VSAR +F+   ERD   W
Sbjct: 189 DAYKIFCEM------------FERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLW 236

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           N M+SGYI   DM EA  LF +MP+ D + WN ++ GYA  GN+E     F+ MP++N+ 
Sbjct: 237 NIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIF 296

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           SWN++I G   N  +   +  F +M  E +  P+  T  ++LS  + +  L LG  +H  
Sbjct: 297 SWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVY 356

Query: 356 VTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
              + +  +V + NAL+ MYA+CG I  A  +F  M   K+++SWN +IGG A H    +
Sbjct: 357 AESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDT-KDLISWNTLIGGLAMHSRGAD 415

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           AL LF  M++    P  ITFI +L AC H GLVE+G  +F+SM ++Y I P+IEH+  +V
Sbjct: 416 ALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMV 475

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D++ R GRLE AM  ++ MP E D  +W  LLGACR++ NVELA++A + L+++EP+N  
Sbjct: 476 DMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPA 535

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            YV+L N+Y D GRW+D   +++ M+    KK  G S ++
Sbjct: 536 NYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIE 575



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 204/448 (45%), Gaps = 71/448 (15%)

Query: 9   REMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DIMPE----- 57
           + M  AR+LFD++P  ++  WN M  GY  S       E  +LF      DI P      
Sbjct: 84  KRMTYARQLFDQIPDPNIALWNSMFRGYAQSES---YREVVFLFFQMKGMDIRPNCFTFP 140

Query: 58  ---RDCVTWNTVISG-------------------------YAKTGEMEEALRLFNSMPAR 89
              + C   N +I G                         Y+  G + +A ++F  M  R
Sbjct: 141 VVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFER 200

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
           NVV+W +MI+G++ + D+ +A   FD  P RD    + +VSG I+ G++ EA ++  +  
Sbjct: 201 NVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMP 260

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
           +R       V  +NT++ GY   G VE    LF+++P            +RNI SWN++I
Sbjct: 261 NRD------VMFWNTVLKGYATNGNVEALEGLFEEMP------------ERNIFSWNALI 302

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWN--TMIS-----GYIHVLDMEEASNLFVKMP-- 260
             YA  G        F++ML       N  T+++       +  LD+ +  +++ +    
Sbjct: 303 GGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGL 362

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             +    NA++  YA+ G +E A+  F+ M  K+L+SWN++I G   +     A+ LF Q
Sbjct: 363 KGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQ 422

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCG 378
           M+  G+KPD  TF  IL   + +  +  G    Q +     ++P +     ++ M AR G
Sbjct: 423 MKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAG 482

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGC 406
            + +A     +M +  + V W  ++G C
Sbjct: 483 RLEQAMAFVRKMPVEADGVIWAGLLGAC 510



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 193/422 (45%), Gaps = 60/422 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y     +  A K+F EM +R+VV+W  MI+GYI S     L  AR LFD+ PERD 
Sbjct: 177 LIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSAD---LVSARRLFDLAPERDV 233

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V WN ++SGY + G+M EA +LF+ MP R+V+ WN ++ G+  NG+V      F+ MP R
Sbjct: 234 VLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPER 293

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +AL+ G   NG   E    ++    R     D+     TL+       R+  A  
Sbjct: 294 NIFSWNALIGGYAHNGLFFE----VLGSFKRMLSESDVPPNDATLVTVLSACARL-GALD 348

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           L   + V  +    +   K N+   N+++  YAK G + +A  +F  M  +D  SWNT+I
Sbjct: 349 LGKWVHVYAE----SSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLI 404

Query: 241 SGYIHVLDMEEASNLFVKMPH----PDTLT------------------------------ 266
            G        +A NLF +M +    PD +T                              
Sbjct: 405 GGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLI 464

Query: 267 ------WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFI 319
                 +  MV   A+ G LE A+ F ++MP + + V W  ++  C   K+ E A +L +
Sbjct: 465 MPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELA-ELAL 523

Query: 320 Q--MQVEGEKPDRHTFSSILSMSSG----IVDLHLGMQIHQMVTKTVIPDVPINNALITM 373
           Q  +++E + P  +   S +   +G    +  L + M+            + +N+A++  
Sbjct: 524 QRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEF 583

Query: 374 YA 375
           Y+
Sbjct: 584 YS 585



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 133/302 (44%), Gaps = 20/302 (6%)

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +V+  A +  +  A   F ++P  N+  WNSM  G   ++ Y   + LF QM+    +P+
Sbjct: 76  LVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPN 135

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFE 388
             TF  +L     I  L  G Q+H  + K      P +   LI MY+  G + +A  IF 
Sbjct: 136 CFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFC 195

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP--TYITFISVLSACAHAGL 446
           EM   +NVV+W +MI     +G+   A +L  + R F + P    + +  ++S     G 
Sbjct: 196 EM-FERNVVAWTSMI-----NGYILSA-DLVSARRLFDLAPERDVVLWNIMVSGYIEGGD 248

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           + E R+ F  M N       +  + +++     +G +E    L + MP E +   W AL+
Sbjct: 249 MVEARKLFHEMPNR-----DVMFWNTVLKGYATNGNVEALEGLFEEMP-ERNIFSWNALI 302

Query: 507 GACRVHNNVELAQVAAEALMKVE---PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
           G    HN +    + +   M  E   P N    V + +  A +G  D    V +  +S+ 
Sbjct: 303 GG-YAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSG 361

Query: 564 IK 565
           +K
Sbjct: 362 LK 363


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 222/679 (32%), Positives = 350/679 (51%), Gaps = 108/679 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-RGSGFLEEARYL-FDIMPER 58
           M+ GY++   + KA KL  +M Q  +      I  ++SS +  G LE  R + F  M   
Sbjct: 97  MVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAG 156

Query: 59  ---DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
              D    N +++ YAK G +EEA  +F+ M  ++VVSW   I G+   G    A E F 
Sbjct: 157 LLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQ 216

Query: 116 RM------PGR-----------DSASLS---ALVSGLIQNGELDEAA------RVLVKCG 149
           +M      P R             A+L    A+ S ++  G   + A      ++  KCG
Sbjct: 217 KMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCG 276

Query: 150 SRCDGGE--------DLVRAYNTLIVGYGQRGRVEEARKLFDK--------------IPV 187
           S  D  +        DL+ A+NT+I G  + G  EEA +++++              I +
Sbjct: 277 SYKDCRQVFEKLVNRDLI-AWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILL 335

Query: 188 NCDRGEGNVRFKRNIVS-------------WNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
           N       + + + I S              N++I  Y++ G +  AR +F++M+ +D  
Sbjct: 336 NACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVI 395

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPH-------------------PDTLTW-------- 267
           SW  MI G        EA  ++ +M                     P  L W        
Sbjct: 396 SWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQV 455

Query: 268 ------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
                       N +V+ Y+  G+++ A   F RM Q+++V++N+MI G   +   + A+
Sbjct: 456 VEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEAL 515

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMY 374
           KLF ++Q EG KPD+ T+ ++L+  +    L    +IH +V K     D  + NAL++ Y
Sbjct: 516 KLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTY 575

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           A+CG+  +A I+FE+M   +NV+SWNA+IGG A HG   +AL+LF+ M+   V P  +TF
Sbjct: 576 AKCGSFSDASIVFEKMTK-RNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTF 634

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           +S+LSAC+HAGL+EEGR++F SM  ++ I P IEH+  +VD++GR G+L++A  LIK MP
Sbjct: 635 VSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMP 694

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANE 554
           F+ +  +WGALLGACR+H NV +A+ AAE+ +K++ +N+  YV L +MYA  G WD A +
Sbjct: 695 FQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAK 754

Query: 555 VRLLMKSNNIKKPTGYSWV 573
           +R LM+   + K  G SW+
Sbjct: 755 LRKLMEQRGVTKEPGRSWI 773



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 168/604 (27%), Positives = 294/604 (48%), Gaps = 78/604 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR----DVVSWNVMISGYISSRGSGFLEEARYLFDIMP 56
           M+   ++ +++   R++   + Q     D  + N +I+ YI     G +EEAR ++  + 
Sbjct: 29  MLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQC---GSIEEARQVWKKLS 85

Query: 57  --ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
             ER   +WN ++ GY + G +E+AL+L   M    +      I  FL +     A+E+ 
Sbjct: 86  YMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEW- 144

Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
               GR+     A+ +GL+ +                       V+  N ++  Y + G 
Sbjct: 145 ----GRE-IHFQAMQAGLLFD-----------------------VKVANCILNMYAKCGS 176

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
           +EEAR++FDK+             K+++VSW   I  YA  G   +A EIF++M E++  
Sbjct: 177 IEEAREVFDKME------------KKSVVSWTITIGGYADCGRSETAFEIFQKM-EQEGV 223

Query: 235 SWNTMISGYIHVLDMEEA-----------SNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
             N +   YI VL+   +           S +       DT    A+V  YA+ G+ +  
Sbjct: 224 VPNRIT--YISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDC 281

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F+++  ++L++WN+MI G      +E A +++ QMQ EG  P++ T+  +L+     
Sbjct: 282 RQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNS 341

Query: 344 VDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             LH G +IH  V K     D+ + NALI+MY+RCG+I +AR++F++M + K+V+SW AM
Sbjct: 342 AALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKM-VRKDVISWTAM 400

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           IGG A  GF  EAL +++ M+   V P  +T+ S+L+AC+    +E GR+  + +V E G
Sbjct: 401 IGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVV-EAG 459

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           +        +LV++    G ++DA  +   M  + D   + A++G    HN   L + A 
Sbjct: 460 LATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAHN---LGKEAL 515

Query: 523 EALMKVEPENSTP----YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPT--GYSWVD-F 575
           +   +++ E   P    Y+ + N  A+ G  + A E+  L++       T  G + V  +
Sbjct: 516 KLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTY 575

Query: 576 SPCG 579
           + CG
Sbjct: 576 AKCG 579



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 140/278 (50%), Gaps = 16/278 (5%)

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNAL 370
           +GA+ +   +Q +G + +   +  +L     + DL  G Q+HQ ++    +PD    NAL
Sbjct: 5   DGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNAL 64

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVV-SWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           I MY +CG+I EAR +++++  ++  V SWNAM+ G   +G+  +AL+L + M+   + P
Sbjct: 65  INMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAP 124

Query: 430 TYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
              T +S LS+C   G +E GR+ HF++M  + G+   ++    ++++  + G +E+A +
Sbjct: 125 DRTTIMSFLSSCKSPGALEWGREIHFQAM--QAGLLFDVKVANCILNMYAKCGSIEEARE 182

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP----YVLLYNMYA 544
           +   M  +     W   +G    + +   ++ A E   K+E E   P    Y+ + N ++
Sbjct: 183 VFDKME-KKSVVSWTITIGG---YADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFS 238

Query: 545 DVG--RWDDANEVRLLMKSNNIKKPTGYSWVD-FSPCG 579
                +W  A   R+L   +      G + V  ++ CG
Sbjct: 239 SPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCG 276


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 194/517 (37%), Positives = 294/517 (56%), Gaps = 22/517 (4%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAI-EFFDRMPG---RD 121
           +IS ++   +M  A+ +FN +   NV  +N +I   +QN     A   FFD        D
Sbjct: 61  LISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFAD 120

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR--VEEAR 179
           + +   L+      G L      ++ C     G    +   N+LI  Y + G   V  A 
Sbjct: 121 NFTYPFLLKACNGKGWLPTVQ--MIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAM 178

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           KLF       + GE      +++VSWNSMI    KAGD+  AR++F++M ERD  SWNT+
Sbjct: 179 KLF------MEMGE------KDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTI 226

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           + GY+   +M +A NLF KMP  + ++W+ MVSGY + G++E+A   F +MP KNLV+W 
Sbjct: 227 LDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWT 286

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
            +I+G       + A  L+ QM+  G KPD  T  SIL+  +    L LG ++H  + K 
Sbjct: 287 IIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKI 346

Query: 360 VIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
            I   V ++NAL+ MYA+CG + +A  IF EM + +++VSWN M+ G A HG   +A++L
Sbjct: 347 RIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSM-RDLVSWNCMLQGLAMHGHGEKAIQL 405

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  M+     P  +T I++L AC HAG V++G  +F SM  ++GI P IEH+  ++D++G
Sbjct: 406 FSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLG 465

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           R GRLE+A  L++ MP EP+  +WG LLGACRVHN V LA+   + L+ +E  +   Y +
Sbjct: 466 RGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSM 525

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           L N++A  G W+    +RL MKS  ++KP+G S ++ 
Sbjct: 526 LSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIEL 562



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 148/284 (52%), Gaps = 23/284 (8%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           A KLF EM ++D+VSWN MI G + +   G L  AR LFD M ERD V+WNT++ GY K 
Sbjct: 177 AMKLFMEMGEKDLVSWNSMIGGLVKA---GDLGRARKLFDEMAERDAVSWNTILDGYVKA 233

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI 133
           GEM +A  LF  MP RNVVSW+ M+SG+ + GD+  A   FD+MP ++  + + ++SG  
Sbjct: 234 GEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFA 293

Query: 134 QNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           + G   EA  +   +   G + D G  +     +++    + G +   +K+   I     
Sbjct: 294 EKGLAKEATTLYNQMEAAGLKPDDGTLI-----SILAACAESGLLVLGKKVHASIK---- 344

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDME 250
                +R K ++   N+++  YAK G V  A  IF +M  RD  SWN M+ G       E
Sbjct: 345 ----KIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGE 400

Query: 251 EASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
           +A  LF KM      PD +T  A++      G ++  L +F  M
Sbjct: 401 KAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSM 444



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 181/360 (50%), Gaps = 38/360 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI G VK  ++ +ARKLFDEM +RD VSWN ++ GY+    +G + +A  LF+ MPER+ 
Sbjct: 195 MIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVK---AGEMSQAFNLFEKMPERNV 251

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W+T++SGY KTG+ME A  LF+ MP +N+V+W  +ISGF + G    A   +++M   
Sbjct: 252 VSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAA 311

Query: 121 ----DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
               D  +L ++++   ++G L    +V   + K   +C      V   N L+  Y + G
Sbjct: 312 GLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCS-----VNVSNALVDMYAKCG 366

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-- 231
           RV++A  +F+++ +            R++VSWN M+   A  G    A ++F +M +   
Sbjct: 367 RVDKALSIFNEMSM------------RDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGF 414

Query: 232 --DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELAL 284
             D  +   ++    H   +++  + F  M       P    +  M+    + G LE A 
Sbjct: 415 KPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAF 474

Query: 285 DFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMSSG 342
              + MP + N V W +++  C  +     A K+  ++  +E   P  ++  S +  ++G
Sbjct: 475 RLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAG 534


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 210/661 (31%), Positives = 330/661 (49%), Gaps = 102/661 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----------------------- 37
           +I+ Y K  ++A A ++F  M  RDVV+W+ MI+ Y                        
Sbjct: 97  LINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPN 156

Query: 38  ---------SSRGSGFLEEARYLFDIMP----ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                    +      LE+ R +  I+     E D      +I+ Y+K GE+  A  +F+
Sbjct: 157 RITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFH 216

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDE 140
            M  RNVVSW A+I    Q+  +  A E +++M       ++ +  +L++       L+ 
Sbjct: 217 KMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNR 276

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             R+      R  G E  +   N LI  Y +   V+EAR++FD++             KR
Sbjct: 277 GRRIHSHISER--GLETDMIVANALITMYCKCNSVQEAREIFDRMS------------KR 322

Query: 201 NIVSWNSMIMCYAKAG--DVVSAREIFEQMLER--------------------------- 231
           +++SW++MI  YA++G  D  S  E+F Q+LER                           
Sbjct: 323 DVISWSAMIAGYAQSGYKDKESIDEVF-QLLERMRREGVFPNKVTFMSILRACTAHGALE 381

Query: 232 ----------------DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
                           D      + + Y     + EA  +F KM + + + W + +S Y 
Sbjct: 382 QGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYI 441

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           + G+L  A   F  MP +N+VSWN MIAG   N D     +L   M+ EG +PDR T  +
Sbjct: 442 KCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVIT 501

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           IL     +  L  G  +H    K  +  D  +  +LI MY++CG + EAR +F++M   +
Sbjct: 502 ILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSN-R 560

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           + V+WNAM+ G   HG   EA++LFK M   +V P  IT  +V+SAC+ AGLV+EGR+ F
Sbjct: 561 DTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIF 620

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           + M  ++ + PR +H+  +VD++GR GRL++A + I+ MP EPD +VW ALLGAC+ HNN
Sbjct: 621 RMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNN 680

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           V+LA+ AA  ++++EP  ++ Y+ L N+YA  GRWDD+ +VR +M    +KK  G S ++
Sbjct: 681 VQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIE 740

Query: 575 F 575
            
Sbjct: 741 I 741



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 162/354 (45%), Gaps = 48/354 (13%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D    N++++ Y++  ++  A   F+RM  +++V+W+SMIA    N     A   F +M 
Sbjct: 90  DIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT 149

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIV 381
               +P+R TF SIL   +    L  G +IH +V    +  DV +  ALITMY++CG I 
Sbjct: 150 DANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEIS 209

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
            A  +F +M   +NVVSW A+I   A H    EA EL++ M    + P  +TF+S+L++C
Sbjct: 210 VACEVFHKMT-ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSC 268

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP------- 494
                +  GR+   S ++E G+E  +    +L+ +  +   +++A ++   M        
Sbjct: 269 NTPEALNRGRR-IHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISW 327

Query: 495 ---------------------FE-----------PDKAVWGALLGACRVHNNVELAQVAA 522
                                F+           P+K  + ++L AC  H  +E  +   
Sbjct: 328 SAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIH 387

Query: 523 EALMKVEPE-NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
             L KV  E + +    ++NMYA  G   +A +V   M + N+      +W  F
Sbjct: 388 AELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNV-----VAWTSF 436



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 114/231 (49%), Gaps = 7/231 (3%)

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALIT 372
           AI+L   ++  G   + +T+  ++   +       G  +H+ + +  +  D+ + N+LI 
Sbjct: 40  AIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLIN 99

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
            Y++   +  A  +F  M L ++VV+W++MI   A +    +A + F+ M    + P  I
Sbjct: 100 FYSKFEDVASAEQVFRRMTL-RDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRI 158

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TF+S+L AC +  ++E+GR+   ++V   G+E  +    +L+ +  + G +  A ++   
Sbjct: 159 TFLSILKACNNYSILEKGRK-IHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHK 217

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENSTPYVLLYN 541
           M  E +   W A++ A   H  +  A    E +++  + P N+  +V L N
Sbjct: 218 MT-ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISP-NAVTFVSLLN 266


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 220/716 (30%), Positives = 362/716 (50%), Gaps = 147/716 (20%)

Query: 1   MISGYVKRREMAKARKLFDEM--PQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           +I+ Y++   + +AR++++++   +R V SWN M+ GY+     G++EEA  L   M + 
Sbjct: 182 LINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQY---GYIEEALKLLREMQQH 238

Query: 59  ---------------------------------------DCVTWNTVISGYAKTGEMEEA 79
                                                  D    N +++ YAK G + EA
Sbjct: 239 GLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEA 298

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDS----------- 122
             +F+ M  ++VVSW  +I G+   G    A E F +M      P R +           
Sbjct: 299 REVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGP 358

Query: 123 ASLS---ALVSGLIQNGELDEAA------RVLVKCGSRCDGGE--------DLVRAYNTL 165
           A+L     + S ++  G   + A      ++  KCGS  D  +        DL+ A+NT+
Sbjct: 359 AALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLI-AWNTM 417

Query: 166 IVGYGQRGRVEEARKLFDK--------------IPVNCDRGEGNVRFKRNIVS------- 204
           I G  + G  EEA +++ +              I +N       + + R I S       
Sbjct: 418 IGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGF 477

Query: 205 ------WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH----------VLD 248
                  N++I  YA+ G +  AR +F +M+ +D  SW  MI G               D
Sbjct: 478 MFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQD 537

Query: 249 MEEA---------SNLFVKMPHPDTLTW--------------------NAMVSGYAQIGN 279
           M++A         +++      P  L W                    N +V+ Y+  G+
Sbjct: 538 MQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGS 597

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           ++ A   F RM Q+++V++N+MI G   +   + A+KLF ++Q EG KPD+ T+ ++L+ 
Sbjct: 598 VKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNA 657

Query: 340 SSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            +    L    +IH +V K   + D  + NAL++ YA+CG+  +A ++F++M + +NV+S
Sbjct: 658 CANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVIS 716

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WNA+IGGCA HG   + L+LF+ M+   + P  +TF+S+LSAC+HAGL+EEGR++F SM 
Sbjct: 717 WNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMS 776

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            ++GI P IEH+  +VD++GR G+L++   LIK MPF+ +  +WGALLGACR+H NV +A
Sbjct: 777 RDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVA 836

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + AAE+ +K++P+N+  YV L +MYA  G WD A ++R LM+   + K  G SW++
Sbjct: 837 ERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIE 892



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 155/593 (26%), Positives = 278/593 (46%), Gaps = 93/593 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR----DVVSWNVMISGYISSRGSGFLEEARYLFDIM- 55
           M+   ++ +++   R++ + + Q     D  + N +I+ YI     G +EEAR +++ + 
Sbjct: 147 MLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQC---GSIEEARQVWNKLN 203

Query: 56  -PERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIE-- 112
             ER   +WN ++ GY + G +EEAL+L   M    +    A     L +    +A+E  
Sbjct: 204 HTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECG 263

Query: 113 ---FFDRMPGR---DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166
                + M  R   D    + +++   + G + EA  V  K  ++       V ++  +I
Sbjct: 264 REIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKS------VVSWTIII 317

Query: 167 VGYGQRGRVEEARKLFDKIP--------------VNCDRGEGNVRFKRNIVSW------- 205
            GY   G  E A ++F K+               +N   G   +++ + + S        
Sbjct: 318 GGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHE 377

Query: 206 ------NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
                  +++  YAK G     R++FE+++ RD  +WNTMI G     + EEAS ++ +M
Sbjct: 378 SDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQM 437

Query: 260 P-------------------HPDTLTW--------------------NAMVSGYAQIGNL 280
                               +P  L W                    NA++S YA+ G++
Sbjct: 438 QREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSI 497

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           + A   F +M +K+++SW +MI G   +     A+ +F  MQ  G KP+R T++SIL+  
Sbjct: 498 KDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNAC 557

Query: 341 SGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           S    L  G +IHQ V +  +  D  + N L+ MY+ CG++ +AR +F+ M   +++V++
Sbjct: 558 SSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMT-QRDIVAY 616

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           NAMIGG A+H    EAL+LF  ++   + P  +T+I++L+ACA++G +E  ++   S+V 
Sbjct: 617 NAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKE-IHSLVL 675

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           + G         +LV    + G   DA+ +   M  + +   W A++G C  H
Sbjct: 676 KDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISWNAIIGGCAQH 727


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 199/582 (34%), Positives = 324/582 (55%), Gaps = 58/582 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS-GFLEEARYLFDIMP--- 56
           +I G+ +  +   A   F +M + ++V  N  I+  + +    G +++   ++ +     
Sbjct: 73  LIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCG 132

Query: 57  -ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
            E D V  N +I  + + GEM  A ++F+ M  R+ VSWN+MI+G+  NG V  A + FD
Sbjct: 133 YEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFD 192

Query: 116 RMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
           RM  R+  S ++++ G ++ G+L E ARVL +     D     + ++  ++  Y   G +
Sbjct: 193 RMEERNVISWTSMIQGYVKAGDLLE-ARVLFERMPEKD-----LASWKVMVSAYMSVGNL 246

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
             AR LF+ +P++            ++ +WN MI    KAG++ +A+E F++M ER+  S
Sbjct: 247 VAARNLFELMPIH------------DVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVAS 294

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           W  +I GYI V D++ A ++F +MP  + + W+ M+ GYA+ G+           P  +L
Sbjct: 295 WVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGH-----------PYSSL 343

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIH 353
                               KL+   + +G KPD      I+S  S  G+ D    + I 
Sbjct: 344 --------------------KLYKTFKEQGIKPDETFALGIISACSQLGVPDTAESV-IC 382

Query: 354 QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
             V  ++ P++ +  +LI MYA+CG I  A  +F EM   K++  ++ +I   A+HG + 
Sbjct: 383 DFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVF-EMVDQKDLHCYSTVITAFANHGLSE 441

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           +A+ LF  M+   + P  + F+ VL+AC H GLV EGR+ F+ M++EYGI+P  +H+A +
Sbjct: 442 DAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGIQPSEKHYACM 501

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           VDI+GR G LE+A  LI  MP  P+  VWGALL ACRVH NV+LA+ AA  L ++EP NS
Sbjct: 502 VDILGRAGCLEEAHSLICSMPVAPNATVWGALLSACRVHLNVQLAEAAATELFQIEPNNS 561

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
             YVLL+N+YAD G+WDD ++VR +++ N ++K  G SW++ 
Sbjct: 562 GNYVLLFNIYADAGQWDDFSKVRAMIRENRVRKNRGSSWIEL 603



 Score = 45.8 bits (107), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 9/211 (4%)

Query: 350 MQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           +  H +++ ++       N L+ +Y++ GA+  A  +F+E     N   W A+I G   +
Sbjct: 22  IHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKLFDETP-EPNSFLWTALIHGFTEN 80

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
                A   F  M    ++P   T  SVL A +  G +++G   +   V   G E  +  
Sbjct: 81  NQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAV-RCGYEFDLVV 139

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
              ++++  R G +  A  +   M  E D   W +++     + N     +A +   ++E
Sbjct: 140 KNVMIELFMRCGEMGSARQMFDEME-ERDAVSWNSMITG---YGNNGRVDIARKLFDRME 195

Query: 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
             N   +  +   Y   G   D  E R+L +
Sbjct: 196 ERNVISWTSMIQGYVKAG---DLLEARVLFE 223


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 209/634 (32%), Positives = 331/634 (52%), Gaps = 78/634 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ER 58
           +I  Y K  ++  AR LFDE+PQ D+V+   +I+ Y     +G L+ +R +F   P   R
Sbjct: 54  LIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAY---SAAGDLKLSRKIFSDTPLGMR 110

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARN---------------------------- 90
           D V +N +I+ Y+   +   A+ LF  M   N                            
Sbjct: 111 DSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQL 170

Query: 91  -----------VVS-WNAMISGFLQNGD---------VANAIEFFDRMPGRDSASLSALV 129
                      V S  NA+IS +++            +A A + FD MP RD  S + ++
Sbjct: 171 HCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTII 230

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           +G ++N +LD A   L     +      L  A+N +I GY  RG   EA ++F K+ ++ 
Sbjct: 231 TGYVKNNDLDAAKEFLNGTSKK------LGVAWNAMISGYAHRGLYLEAFEMFRKMIMS- 283

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW--------NTMIS 241
                  + + +  ++ S+I   A AG     +E+    L+              N +I+
Sbjct: 284 -------KIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALIT 336

Query: 242 GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
            Y     ++ A  +F KMP  D ++WN ++SGY  +  ++ A  FF  MP+KN++SW  M
Sbjct: 337 FYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIM 396

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTV 360
           I+G       E A+K F +M+++G +P  + F+  +   S +  L  G Q+H Q+V    
Sbjct: 397 ISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGY 456

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
              +   NALITMYARCG +  A  +F  M  + + +SWNAMI     HG  T+A+ELF+
Sbjct: 457 ESSLSAGNALITMYARCGVVDAAHCLFINMPCV-DAISWNAMIAALGQHGQGTQAIELFE 515

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M    +LP  I+F++V+SAC+HAGLV+EGR++F SM N YG+ P  EH+A ++D++ R 
Sbjct: 516 EMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRA 575

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G+  +A ++++ MPFEP   +W ALL  CR+H N++L   AAE L +++P++   YVLL 
Sbjct: 576 GKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLS 635

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           NMYA  G+W+D  +VR LM+   +KK  G SW++
Sbjct: 636 NMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIE 669



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 172/389 (44%), Gaps = 56/389 (14%)

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP--QKN 294
           N +I  Y     +  A  LF ++P PD +    +++ Y+  G+L+L+   F   P   ++
Sbjct: 52  NRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRD 111

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG-MQIH 353
            V +N+MI     N D   AI+LF  MQ +  +PD +TF+S+L   + + +      Q+H
Sbjct: 112 SVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLH 171

Query: 354 QMVTKTVIPDV-PINNALITMYARCGA---------IVEARIIFEEMK------------ 391
             V K+    V  + NALI+ Y +C A         + EAR +F+EM             
Sbjct: 172 CAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIIT 231

Query: 392 -LLKNV-----------------VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
             +KN                  V+WNAMI G A  G   EA E+F+ M   K+     T
Sbjct: 232 GYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFT 291

Query: 434 FISVLSACAHAGLVEEGRQ---HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
           F SV+S CA+AG    G++   +F   V     +  +    +L+    + G+++ A ++ 
Sbjct: 292 FTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIF 351

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
             MP E D   W  +L     + NV     A     ++  +N   ++++ +  A +G  +
Sbjct: 352 NKMP-ERDLVSWNIILSG---YVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAE 407

Query: 551 DANEVRLLMKSNNIKKPTGYSWVDFSPCG 579
           +A      +K  N  K  G+   D++  G
Sbjct: 408 EA------LKFFNRMKLQGFEPCDYAFAG 430


>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
          Length = 1796

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 218/648 (33%), Positives = 328/648 (50%), Gaps = 96/648 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y +   M +A++LF+EMP+R+  SWN MI GY+ S   G   ++  LFD MP +D 
Sbjct: 48  LLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKG---KSLELFDSMPHKDA 104

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF------ 114
            +WN VISG+AK G +E A RLFN MP +N ++WN+MI G+  NG    A+  F      
Sbjct: 105 FSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLN 164

Query: 115 --DRMPGRDSASLSALVSGLIQNGELDEA----ARVLV------------------KCGS 150
             +R  G D+  L+ +V      G LD      AR++V                  KCG 
Sbjct: 165 PLERFCG-DTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGD 223

Query: 151 RCDGGEDLVR--------AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
             D    ++         + + LI GY   GR+ +AR++F      C            +
Sbjct: 224 -IDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXC------------V 270

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG-------------YIH 245
           V WNSMI  Y    + + A E+F  M    ++ D  ++ +++S              + H
Sbjct: 271 VLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAH 330

Query: 246 V---------------LDM-------EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           V               +DM       ++A  LF  +   DT+  N+M++ Y+  G ++ A
Sbjct: 331 VYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDA 390

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F  MP K+L+SWNSMI G   N     A+ LF +M   G + D+ + + ++S  + I
Sbjct: 391 RQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASI 450

Query: 344 VDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             L LG QI    T   +  D  I+ +L+  Y +CG +   R +F+ M +  + V WN+M
Sbjct: 451 SSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRM-MKSDEVPWNSM 509

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           + G A++G   EAL +F  MRS  V PT ITF+ VLSAC H GLVEEGR+ F +M  +Y 
Sbjct: 510 LMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYH 569

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           I P IEH++ +VD+  R G LEDAM+LI+ MP + D ++W ++L  C  H N  L +  A
Sbjct: 570 INPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVA 629

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGY 570
           + ++ ++PENS  YV L  +YA    W  + +VR LM    I K T +
Sbjct: 630 KRIIDLDPENSGAYVQLSGIYATFEDWGRSAQVRKLMYDKKIPKDTSF 677



 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 177/555 (31%), Positives = 294/555 (52%), Gaps = 44/555 (7%)

Query: 38   SSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM 97
            S  G+G   ++  +F+ + +++ ++WN  +  + + GE+E A  +F+ MP R+VVSWN M
Sbjct: 756  SQLGTG--NDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTM 813

Query: 98   ISGFLQNGDVANAIEFFDRM-------PGRDSASLSALVSGLIQNGELDEAARVLVKCGS 150
            ISG++  G   +A  FF  M        G   ++L + VS   +  ++           S
Sbjct: 814  ISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSACRGKQIH---------AS 864

Query: 151  RCDGGEDL--VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
                G DL  V   N+LI  YG+ G V+ A  +F  +             + +I+SWNS+
Sbjct: 865  MIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITME------------ELDIISWNSL 912

Query: 209  IMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDT 264
            I    K+G    A   F  M       D F+ +T+I+   ++ D+E+   +F        
Sbjct: 913  IWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGF 972

Query: 265  LTWNAMVSG-----YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
            L+ N++VS      +++   LE ++  F+ + Q + V  N+MI+    +   E A++LF+
Sbjct: 973  LS-NSIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFV 1031

Query: 320  QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCG 378
                E  +P   T S +LS  S ++ +  G QIH +V K+ +  DV + ++L+ MYA+ G
Sbjct: 1032 LTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFG 1091

Query: 379  AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
             I  A   F ++   ++++SWN MI G A +G  ++ALE+FK +      P  IT   VL
Sbjct: 1092 LIDSAMKTFAKIG-ARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVL 1150

Query: 439  SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
             AC   GLV+EG   F SM  EYG+ P IEH+A +VD++ R G+L++AMD+++ MP EP 
Sbjct: 1151 LACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHEPS 1210

Query: 499  KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558
              +WG+LL AC ++ ++   +  AE +M++EP++S PY++L   Y   GRW+    V   
Sbjct: 1211 GLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPYLVLAQAYEMRGRWESLVRVXRA 1270

Query: 559  MKSNNIKKPTGYSWV 573
            MK   ++K  G SW+
Sbjct: 1271 MKEKGVRKVIGCSWI 1285



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 141/476 (29%), Positives = 235/476 (49%), Gaps = 44/476 (9%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N ++  Y++   M EA +LF  MP RN  SWN MI G+L++G    ++E FD MP +D+ 
Sbjct: 46  NRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAF 105

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S + ++SG  + G L+ A R+  +   + +G      A+N++I GY   GR +EA  LF 
Sbjct: 106 SWNVVISGFAKEGNLEVARRLFNEMPWK-NG-----IAWNSMIHGYACNGRPKEAVGLFK 159

Query: 184 KIPVN-CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
            + +N  +R  G+      +V   + +      G  + AR + ++ +E D+   +++++ 
Sbjct: 160 DLSLNPLERFCGDTFVLATVVGACTNLGAL-DCGKQIHARIVVDE-VEFDSVLGSSLVNL 217

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
           Y    D++ A+++   M  PD  + +A++SGYA  G +  A   F       +V WNSMI
Sbjct: 218 YGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMI 277

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH--------- 353
           +G   N +   A++LF  M+ +G + D  TF+S+LS  S +  +  G+Q+H         
Sbjct: 278 SGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFT 337

Query: 354 ----------QMVTKTVIP-------------DVPINNALITMYARCGAIVEARIIFEEM 390
                      M +K   P             D  + N++IT+Y+ CG I +AR IF+ M
Sbjct: 338 NDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTM 397

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
              K+++SWN+MI G + +    EAL+LF  M    +     +   V+SACA    +E G
Sbjct: 398 P-SKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELG 456

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            Q F +     G+E       SLVD   + G +E    L   M  + D+  W ++L
Sbjct: 457 EQIF-ARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRM-MKSDEVPWNSML 510



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 141/556 (25%), Positives = 260/556 (46%), Gaps = 57/556 (10%)

Query: 1    MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
            ++  Y K   +   RKLFD M + D V WN M+ GY ++ G G   EA  +FD M     
Sbjct: 478  LVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGY-ATNGHGI--EALNVFDQMRSVGV 534

Query: 57   ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
            +   +T+  V+S     G +EE  + F +M         +  ++ M+  + + G + +A+
Sbjct: 535  QPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAM 594

Query: 112  EFFDRMPGR-DSASLSALVSGLIQNGEL---DEAARVLVKCGSRCDGGE-DLVRAYNTLI 166
               ++MP + D++  S+++ G + +G      + A+ ++       G    L   Y T  
Sbjct: 595  NLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYAT-- 652

Query: 167  VGYGQRGRVEEARKLF--DKIPVNC-------DRGEG---------NVRFKRNIV---SW 205
              +   GR  + RKL    KIP +        +  EG          ++ ++N+V     
Sbjct: 653  --FEDWGRSAQVRKLMYDKKIPKDTSFDIAGEEGXEGLSSETKEVTKMKQRQNLVLRLVA 710

Query: 206  NSMIMCYAKAGDVVSAREI---FEQMLE----RDTFSWNTMISGYIHVLDMEEASNLFVK 258
                 C  +    ++AR     F+ +++      TF  N  +  Y  +    ++  +F  
Sbjct: 711  EKKRECDERDQKFMAARRTLLEFDMLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFED 770

Query: 259  MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
            +   + ++WN  +  + + G LE A D F  MP++++VSWN+MI+G  +   ++ A + F
Sbjct: 771  IIDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFF 830

Query: 319  IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTV-IPDVPINNALITMYAR 376
             +MQ  G +P   T+S++LS  S       G QIH  M+   V + +V + N+LI MY +
Sbjct: 831  SEMQKAGIRPSGFTYSTLLSFVSSACR---GKQIHASMIRNGVDLSNVVVGNSLIGMYGK 887

Query: 377  CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
             G +  A  +F  M+ L +++SWN++I  C   G+   AL  F  MRS    P   T  +
Sbjct: 888  FGVVDYAFGVFITMEEL-DIISWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVST 946

Query: 437  VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
            V++ C++   +E+G Q F   +    +   I   AS +D+  +  RLED++ + + + ++
Sbjct: 947  VITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSAS-IDLFSKCNRLEDSVRVFEEI-YQ 1004

Query: 497  PDKAVWGALLGACRVH 512
             D  +  A++ +   H
Sbjct: 1005 WDSVLCNAMISSYAWH 1020



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 207/451 (45%), Gaps = 48/451 (10%)

Query: 1    MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
             +  +V+  E+ +AR +FDEMP+RDVVSWN MISGY+S    G  ++A   F  M +   
Sbjct: 782  FLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVS---FGLFDDAFRFFSEMQKAGI 838

Query: 61   ----VTWNTVIS--GYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
                 T++T++S    A  G+   A  + N +   NVV  N++I  + + G V  A   F
Sbjct: 839  RPSGFTYSTLLSFVSSACRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVF 898

Query: 115  DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGS---------------RCDGGEDLV 159
              M   D  S ++L+    ++G  + A R  V   S                C   +DL 
Sbjct: 899  ITMEELDIISWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLE 958

Query: 160  RAYNTLI----VGYGQRGRVEEAR-KLFDKIPVNCDRGEGNVRFKRNIVSW-----NSMI 209
            +          VG+     V  A   LF K    C+R E +VR    I  W     N+MI
Sbjct: 959  KGEQIFALCIRVGFLSNSIVSSASIDLFSK----CNRLEDSVRVFEEIYQWDSVLCNAMI 1014

Query: 210  MCYAKAGDVVSAREIF----EQMLERDTFSWNTMISGYIHVLDMEEAS---NLFVKMP-H 261
              YA  G   +A ++F     + L    F+ + ++S    +L +++ S   +L VK    
Sbjct: 1015 SSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLE 1074

Query: 262  PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
             D +  +++V  YA+ G ++ A+  F ++  ++L+SWN+MI G   N     A+++F ++
Sbjct: 1075 SDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKEL 1134

Query: 322  QVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGA 379
             + G  PD  T + +L   +  G+VD  L +         VIP +     ++ M +R G 
Sbjct: 1135 LIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGK 1194

Query: 380  IVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            + EA  I E M    + + W +++  C  +G
Sbjct: 1195 LKEAMDIVELMPHEPSGLIWGSLLCACEIYG 1225



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 19/241 (7%)

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD--VPINNALITMYARCGAIVEARII 386
           D H+ +  L   +    ++ G  +H +  K+ +    + I N L+ MY+RC ++ EA+ +
Sbjct: 5   DLHSLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQL 64

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           FEEM   +N  SWN MI G    G   ++LELF SM         +    V+S  A  G 
Sbjct: 65  FEEMP-KRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNV----VISGFAKEGN 119

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP------DKA 500
           +E  R+ F  M  + GI      + S++     +GR ++A+ L K +   P      D  
Sbjct: 120 LEVARRLFNEMPWKNGIA-----WNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTF 174

Query: 501 VWGALLGACRVHNNVELA-QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
           V   ++GAC     ++   Q+ A  ++     +S     L N+Y   G  D AN V  LM
Sbjct: 175 VLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLM 234

Query: 560 K 560
           K
Sbjct: 235 K 235


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 189/526 (35%), Positives = 307/526 (58%), Gaps = 31/526 (5%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----G 119
           NT++S YAK G + +A R+F+S+  RN+VSW AMI  F+       A + ++ M      
Sbjct: 86  NTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCK 145

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG-YGQRGRVEEA 178
            D  +  +L++       L    +V ++     + G +L     T +VG Y + G + +A
Sbjct: 146 PDKVTFVSLLNAFTNPELLQLGQKVHMEI---VEAGLELEPRVGTSLVGMYAKCGDISKA 202

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----F 234
           R +FD++P            ++N+V+W  +I  YA+ G V  A E+ E M + +      
Sbjct: 203 RVIFDRLP------------EKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKI 250

Query: 235 SWNTMISGYIHVLDMEEASNL--FVKMPHPDTLTW--NAMVSGYAQIGNLELALDFFKRM 290
           ++ +++ G      +E    +  ++         W  N++++ Y + G LE A   F  +
Sbjct: 251 TFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDL 310

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
           P +++V+W +M+ G      ++ AI LF +MQ +G KPD+ TF+S+L+  S    L  G 
Sbjct: 311 PHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGK 370

Query: 351 QIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC-AS 408
           +IHQ +V      DV + +AL++MYA+CG++ +A ++F +M   +NVV+W A+I GC A 
Sbjct: 371 RIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSE-RNVVAWTAIITGCCAQ 429

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           HG   EALE F  M+   + P  +TF SVLSAC H GLVEEGR+HF+SM  +YGI+P +E
Sbjct: 430 HGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVE 489

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528
           H++  VD++GR G LE+A ++I  MPF P  +VWGALL ACRVH++VE  + AAE ++K+
Sbjct: 490 HYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKL 549

Query: 529 EPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +P++   YV L ++YA  GR++DA +VR +M+  ++ K  G SW++
Sbjct: 550 DPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIE 595



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 217/466 (46%), Gaps = 77/466 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++S Y K   +  AR++FD +  R++VSW  MI  +++  G+  L EA   ++ M    C
Sbjct: 88  LLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVA--GNKNL-EAFKCYETMKLAGC 144

Query: 61  ----VTW-----------------------------------NTVISGYAKTGEMEEALR 81
               VT+                                    +++  YAK G++ +A  
Sbjct: 145 KPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARV 204

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA----SLSALVSGLIQNGE 137
           +F+ +P +NVV+W  +I+G+ Q G V  A+E  + M   + A    + ++++ G      
Sbjct: 205 IFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAA 264

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           L+   +V   +++ G     G +L    N+LI  Y + G +EEARKLF  +P        
Sbjct: 265 LEHGKKVHRYIIQSGY----GREL-WVVNSLITMYCKCGGLEEARKLFSDLP-------- 311

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME 250
                R++V+W +M+  YA+ G    A  +F +M ++    D  ++ ++++       ++
Sbjct: 312 ----HRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQ 367

Query: 251 EASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG-C 305
           E   +  ++ H     D    +A+VS YA+ G+++ A   F +M ++N+V+W ++I G C
Sbjct: 368 EGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCC 427

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPD 363
             +     A++ F QM+ +G KPD+ TF+S+LS  +  G+V+          +   + P 
Sbjct: 428 AQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPM 487

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           V   +  + +  R G + EA  +   M  +     W A++  C  H
Sbjct: 488 VEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVH 533



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 165/327 (50%), Gaps = 21/327 (6%)

Query: 194 GNVRFKRNIVSWNSM---IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH----V 246
           GN  F++     NS    ++C  K G +  A  I   M+ + T  ++ +  G +     +
Sbjct: 3   GNAGFRKVETLANSRDVSVLC--KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARL 60

Query: 247 LDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
             +E+   +   +      P+    N ++S YA+ G+L  A   F  +  +N+VSW +MI
Sbjct: 61  RSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMI 120

Query: 303 -AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
            A    NK+ E A K +  M++ G KPD+ TF S+L+  +    L LG ++H  + +  +
Sbjct: 121 EAFVAGNKNLE-AFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGL 179

Query: 362 PDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
              P +  +L+ MYA+CG I +AR+IF+ +   KNVV+W  +I G A  G    ALEL +
Sbjct: 180 ELEPRVGTSLVGMYAKCGDISKARVIFDRLP-EKNVVTWTLLIAGYAQQGQVDVALELLE 238

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE-YGIEPRIEHFASLVDIVGR 479
           +M+  +V P  ITF S+L  C     +E G++  + ++   YG E  +    SL+ +  +
Sbjct: 239 TMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWV--VNSLITMYCK 296

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALL 506
            G LE+A  L   +P   D   W A++
Sbjct: 297 CGGLEEARKLFSDLPHR-DVVTWTAMV 322



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 168/369 (45%), Gaps = 77/369 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD- 59
           ++  Y K  +++KAR +FD +P+++VV+W ++I+GY      G ++ A  L + M + + 
Sbjct: 189 LVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQ---GQVDVALELLETMQQAEV 245

Query: 60  -------------CVT-----------------------W--NTVISGYAKTGEMEEALR 81
                        C T                       W  N++I+ Y K G +EEA +
Sbjct: 246 APNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARK 305

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           LF+ +P R+VV+W AM++G+ Q G    AI  F RM  +    D  + +++++       
Sbjct: 306 LFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAF 365

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           L E  R+   LV  G   D     V   + L+  Y + G +++A  +F+++         
Sbjct: 366 LQEGKRIHQQLVHAGYNLD-----VYLQSALVSMYAKCGSMDDASLVFNQMS-------- 412

Query: 195 NVRFKRNIVSWNSMIM-CYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDM 249
               +RN+V+W ++I  C A+ G    A E F+QM    ++ D  ++ +++S   HV  +
Sbjct: 413 ----ERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLV 468

Query: 250 EEASNLFVKM-----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIA 303
           EE    F  M       P    ++  V    + G+LE A +    MP     S W ++++
Sbjct: 469 EEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLS 528

Query: 304 GCETNKDYE 312
            C  + D E
Sbjct: 529 ACRVHSDVE 537


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 192/520 (36%), Positives = 287/520 (55%), Gaps = 41/520 (7%)

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD--------- 121
           A    M  A +LF+ +P  N+  WN+M  G+ Q+      +  F +M G D         
Sbjct: 144 ATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFP 203

Query: 122 -----SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
                   ++AL+ G       ++    L+KCG R   G   V    TLI  Y   G V 
Sbjct: 204 VVLKSCGKINALIEG-------EQVHCFLIKCGFR---GNPFVG--TTLIDMYSAGGTVG 251

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           +A K+F ++            F+RN+V+W SMI  Y  + D+VSAR +F+   ERD   W
Sbjct: 252 DAYKIFCEM------------FERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLW 299

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           N M+SGYI   DM EA  LF +MP+ D + WN ++ GYA  GN+E     F+ MP++N+ 
Sbjct: 300 NIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIF 359

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           SWN++I G   N  +   +  F +M  E +  P+  T  ++LS  + +  L LG  +H  
Sbjct: 360 SWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVY 419

Query: 356 VTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
              + +  +V + NAL+ MYA+CG I  A  +F  M   K+++SWN +IGG A H    +
Sbjct: 420 AESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDT-KDLISWNTLIGGLAMHSRGAD 478

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           AL LF  M++    P  ITFI +L AC H GLVE+G  +F+SM ++Y I P+IEH+  +V
Sbjct: 479 ALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMV 538

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D++ R GRLE A   ++ MP E D  +W  LLGACR++ NVELA++A + L+++EP+N  
Sbjct: 539 DMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPA 598

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            YV+L N+Y D GRW+D   +++ M+    KK  G S ++
Sbjct: 599 NYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIE 638



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 204/448 (45%), Gaps = 71/448 (15%)

Query: 9   REMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DIMPE----- 57
           + M  AR+LFD++P  ++  WN M  GY  S       E  +LF      DI P      
Sbjct: 147 KRMTYARQLFDQIPDPNIALWNSMFRGYAQSES---YREVVFLFFQMKGMDIRPNCFTFP 203

Query: 58  ---RDCVTWNTVISG-------------------------YAKTGEMEEALRLFNSMPAR 89
              + C   N +I G                         Y+  G + +A ++F  M  R
Sbjct: 204 VVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFER 263

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
           NVV+W +MI+G++ + D+ +A   FD  P RD    + +VSG I+ G++ EA ++  +  
Sbjct: 264 NVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMP 323

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
           +R       V  +NT++ GY   G VE    LF+++P            +RNI SWN++I
Sbjct: 324 NRD------VMFWNTVLKGYATNGNVEALEGLFEEMP------------ERNIFSWNALI 365

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWN--TMIS-----GYIHVLDMEEASNLFVKMP-- 260
             YA  G        F++ML       N  T+++       +  LD+ +  +++ +    
Sbjct: 366 GGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGL 425

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             +    NA++  YA+ G +E A+  F+ M  K+L+SWN++I G   +     A+ LF Q
Sbjct: 426 KGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQ 485

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCG 378
           M+  G+KPD  TF  IL   + +  +  G    Q +     ++P +     ++ M AR G
Sbjct: 486 MKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAG 545

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGC 406
            + +A     +M +  + V W  ++G C
Sbjct: 546 RLEQAXAFVRKMPVEADGVIWAGLLGAC 573



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 191/422 (45%), Gaps = 60/422 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y     +  A K+F EM +R+VV+W  MI+GYI S     L  AR LFD+ PERD 
Sbjct: 240 LIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSAD---LVSARRLFDLAPERDV 296

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V WN ++SGY + G+M EA +LF  MP R+V+ WN ++ G+  NG+V      F+ MP R
Sbjct: 297 VLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPER 356

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +AL+ G   NG   E    ++    R     D+     TL+       R+  A  
Sbjct: 357 NIFSWNALIGGYAHNGLFFE----VLGSFKRMLSESDVPPNDATLVTVLSACARL-GALD 411

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           L   + V  +    +   K N+   N+++  YAK G + +A  +F  M  +D  SWNT+I
Sbjct: 412 LGKWVHVYAE----SSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLI 467

Query: 241 SGYIHVLDMEEASNLFVKMPH----PDTLT------------------------------ 266
            G        +A NLF +M +    PD +T                              
Sbjct: 468 GGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLI 527

Query: 267 ------WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFI 319
                 +  MV   A+ G LE A  F ++MP + + V W  ++  C   K+ E A +L +
Sbjct: 528 MPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELA-ELAL 586

Query: 320 Q--MQVEGEKPDRHTFSSILSMSSG----IVDLHLGMQIHQMVTKTVIPDVPINNALITM 373
           Q  +++E + P  +   S +   +G    +  L + M+            + +N+A++  
Sbjct: 587 QRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEF 646

Query: 374 YA 375
           Y+
Sbjct: 647 YS 648



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 133/302 (44%), Gaps = 20/302 (6%)

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +V+  A +  +  A   F ++P  N+  WNSM  G   ++ Y   + LF QM+    +P+
Sbjct: 139 LVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPN 198

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFE 388
             TF  +L     I  L  G Q+H  + K      P +   LI MY+  G + +A  IF 
Sbjct: 199 CFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFC 258

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT--YITFISVLSACAHAGL 446
           EM   +NVV+W +MI     +G+   A +L  + R F + P    + +  ++S     G 
Sbjct: 259 EM-FERNVVAWTSMI-----NGYILSA-DLVSARRLFDLAPERDVVLWNIMVSGYIEGGD 311

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           + E R+ F  M N       +  + +++     +G +E    L + MP E +   W AL+
Sbjct: 312 MVEARKLFXEMPNR-----DVMFWNTVLKGYATNGNVEALEGLFEEMP-ERNIFSWNALI 365

Query: 507 GACRVHNNVELAQVAAEALMKVE---PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
           G    HN +    + +   M  E   P N    V + +  A +G  D    V +  +S+ 
Sbjct: 366 GG-YAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSG 424

Query: 564 IK 565
           +K
Sbjct: 425 LK 426


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 181/460 (39%), Positives = 272/460 (59%), Gaps = 33/460 (7%)

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
           ++G  QN    EA ++  K        E    ++N L+ GY Q G + EARK+FDK+P  
Sbjct: 1   MAGYFQNKRPREARKLFDKMP------ETNTISWNGLVSGYVQNGMISEARKVFDKMP-- 52

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                     +RN+VSW +MI  Y + G +  A  +F +M ER+  SW  M+ G I    
Sbjct: 53  ----------ERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGR 102

Query: 249 MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           ++EA  LF  MP  D +    M+ G    G L  A + F  MPQ+N+V+W SMI+G + +
Sbjct: 103 VDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDD 162

Query: 309 KDYEGAIK-------------LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-Q 354
             +   IK             LF  MQ EG +P   +  S+LS+   +  L  G Q+H Q
Sbjct: 163 GTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQ 222

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           +V      D+ +++ LITMY +CG +V A+ +F+     K++V WN++I G A HGF  +
Sbjct: 223 LVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSS-KDIVMWNSIIAGYAQHGFGEK 281

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           ALE+F  M S  + P  ITFI VLSAC++ G V+EG + F+SM ++Y ++P+ EH+A +V
Sbjct: 282 ALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMV 341

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D++GR G+L +AM+LI+ MP E D  VWGALLGACR H N++LA++AA+ L+++EP N+ 
Sbjct: 342 DLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAG 401

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           PY+LL N+Y+   RW D  E+R  M++ N++K  G SW++
Sbjct: 402 PYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIE 441



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 130/424 (30%), Positives = 209/424 (49%), Gaps = 61/424 (14%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           ++GY + +   +ARKLFD+MP+ + +SWN ++SGY+    +G + EAR +FD MPER+ V
Sbjct: 1   MAGYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQ---NGMISEARKVFDKMPERNVV 57

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           +W  +I GY + G +EEA  LF  MP RNVVSW  M+ G +++G V  A + FD MP +D
Sbjct: 58  SWTAMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKD 117

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSR-------CDGGEDLVRAYNTLIVGYGQRGR 174
             + + ++ GL   G L EA  +  +   R          GE     ++T+I  Y ++G 
Sbjct: 118 VVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGF 177

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS---AREIFEQMLER 231
             EA  LF  +     + EG VR      S+ S+I   +  G + S    R++  Q++  
Sbjct: 178 ELEALALFSLM-----QREG-VR-----PSFPSVISVLSVCGSLASLDHGRQVHSQLVRS 226

Query: 232 ----DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
               D +  + +I+ YI   D+  A  +F +    D + WN++++GYAQ G  E AL+ F
Sbjct: 227 QFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVF 286

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
             M       ++S IA                        PD  TF  +LS  S    + 
Sbjct: 287 HDM-------FSSSIA------------------------PDEITFIGVLSACSYTGKVK 315

Query: 348 LGMQIHQ-MVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
            G++I + M +K  V P       ++ +  R G + EA  + E M +  + + W A++G 
Sbjct: 316 EGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGA 375

Query: 406 CASH 409
           C +H
Sbjct: 376 CRTH 379


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 190/515 (36%), Positives = 279/515 (54%), Gaps = 21/515 (4%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD---- 121
           V++ +    +M  A  LF+  P   V  WNA+  G+  N      +  F +M   D    
Sbjct: 105 VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPN 164

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             +   ++    + G   E   +   C     G E       TLI  Y     +  A KL
Sbjct: 165 CFTFPLVLKSCAKIGAFVEGEEI--HCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKL 222

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           F  +             +RNIV+W SMI  Y     V  AR +F+   ERD   WN M+S
Sbjct: 223 FVGM------------LERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVS 270

Query: 242 GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           GYI + DM+ A  LF  MP+ DT++WN M++GYA  G++E     F+ MP++N+ SWN +
Sbjct: 271 GYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGL 330

Query: 302 IAGCETNKDYEGAIKLFIQMQVEG-EKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKT 359
           I G   N  +   ++ F +M ++G   P+  T  ++LS  + +  L LG  +H    T  
Sbjct: 331 IGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIG 390

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
               + + NALI MY++CG I  A  +FE M L K++++WN+MI G A+HG   +AL LF
Sbjct: 391 FKGSIYVGNALIDMYSKCGLIENAMEVFESMDL-KDLITWNSMICGLATHGCGADALTLF 449

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M+     P  ITFI VL +C H GLVEEG  +F SMVNEY I P+IEH+  +VD+ GR
Sbjct: 450 HQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGR 509

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G L+ A++ +K MP E D  +W ALLGACR++ N++LA++A + L+ +EP+N   YVLL
Sbjct: 510 AGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLL 569

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+Y D+GRW D   +++LM+    KK  G S ++
Sbjct: 570 SNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIE 604



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 128/461 (27%), Positives = 206/461 (44%), Gaps = 81/461 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD- 59
           +++ +V  ++MA AR LFD  P   V  WN +  GY     + F  E  +LF  M   D 
Sbjct: 105 VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFH---NAFYREVVFLFGKMKSMDV 161

Query: 60  ---CVTWNTVISGYAKTGEMEE-----------------------------------ALR 81
              C T+  V+   AK G   E                                   A +
Sbjct: 162 RPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYK 221

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           LF  M  RN+V+W +MISG++    VA A   FD  P RD    + +VSG I+ G++ +A
Sbjct: 222 LFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDM-KA 280

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
           AR L       D       ++NT++ GY   G VE   +LF+++P            +RN
Sbjct: 281 ARKLFDTMPYRD-----TMSWNTMLNGYANNGDVEACEQLFEEMP------------ERN 323

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN--TMIS-----GYIHVLDMEEASN 254
           + SWN +I  YA  G        F++ML       N  T+++       +  LD+ +  +
Sbjct: 324 VFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVH 383

Query: 255 LFVKMP--HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           ++             NA++  Y++ G +E A++ F+ M  K+L++WNSMI G  T+    
Sbjct: 384 VYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGA 443

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM------QIHQMVTK-TVIPDVP 365
            A+ LF QM++ GEKPD  TF  +L   +     HLG+        + MV + ++ P + 
Sbjct: 444 DALTLFHQMKINGEKPDGITFIGVLCSCT-----HLGLVEEGTSYFNSMVNEYSIAPQIE 498

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
               ++ ++ R G +  A    + M +  + V W A++G C
Sbjct: 499 HYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGAC 539



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 171/358 (47%), Gaps = 59/358 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y   R +  A KLF  M +R++V+W  MISGYI          AR LFD+ PERD 
Sbjct: 206 LIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVAL---ARRLFDLAPERDV 262

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V WN ++SGY + G+M+ A +LF++MP R+ +SWN M++G+  NGDV    + F+ MP R
Sbjct: 263 VLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPER 322

Query: 121 DSASLSALVSGLIQNGELDEAAR----------------VLVKCGSRCD--GGEDL---V 159
           +  S + L+ G   NG   E  R                 LV   S C   G  DL   V
Sbjct: 323 NVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWV 382

Query: 160 RAY-------------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
             Y             N LI  Y + G +E A ++F+ + +            +++++WN
Sbjct: 383 HVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDL------------KDLITWN 430

Query: 207 SMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH- 261
           SMI   A  G    A  +F QM     + D  ++  ++    H+  +EE ++ F  M + 
Sbjct: 431 SMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNE 490

Query: 262 ----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
               P    +  MV  + + G L+ A++F KRMP + + V W +++  C   K+ + A
Sbjct: 491 YSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLA 548


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 190/515 (36%), Positives = 279/515 (54%), Gaps = 21/515 (4%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD---- 121
           V++ +    +M  A  LF+  P   V  WNA+  G+  N      +  F +M   D    
Sbjct: 63  VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPN 122

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             +   ++    + G   E   +   C     G E       TLI  Y     +  A KL
Sbjct: 123 CFTFPLVLKSCAKIGAFVEGEEI--HCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKL 180

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           F  +             +RNIV+W SMI  Y     V  AR +F+   ERD   WN M+S
Sbjct: 181 FVGM------------LERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVS 228

Query: 242 GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           GYI + DM+ A  LF  MP+ DT++WN M++GYA  G++E     F+ MP++N+ SWN +
Sbjct: 229 GYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGL 288

Query: 302 IAGCETNKDYEGAIKLFIQMQVEG-EKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKT 359
           I G   N  +   ++ F +M ++G   P+  T  ++LS  + +  L LG  +H    T  
Sbjct: 289 IGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIG 348

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
               + + NALI MY++CG I  A  +FE M L K++++WN+MI G A+HG   +AL LF
Sbjct: 349 FKGSIYVGNALIDMYSKCGLIENAMEVFESMDL-KDLITWNSMICGLATHGCGADALTLF 407

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M+     P  ITFI VL +C H GLVEEG  +F SMVNEY I P+IEH+  +VD+ GR
Sbjct: 408 HQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGR 467

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G L+ A++ +K MP E D  +W ALLGACR++ N++LA++A + L+ +EP+N   YVLL
Sbjct: 468 AGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLL 527

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+Y D+GRW D   +++LM+    KK  G S ++
Sbjct: 528 SNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIE 562



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/461 (27%), Positives = 206/461 (44%), Gaps = 81/461 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD- 59
           +++ +V  ++MA AR LFD  P   V  WN +  GY     + F  E  +LF  M   D 
Sbjct: 63  VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFH---NAFYREVVFLFGKMKSMDV 119

Query: 60  ---CVTWNTVISGYAKTGEMEE-----------------------------------ALR 81
              C T+  V+   AK G   E                                   A +
Sbjct: 120 RPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYK 179

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           LF  M  RN+V+W +MISG++    VA A   FD  P RD    + +VSG I+ G++ +A
Sbjct: 180 LFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDM-KA 238

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
           AR L       D       ++NT++ GY   G VE   +LF+++P            +RN
Sbjct: 239 ARKLFDTMPYRD-----TMSWNTMLNGYANNGDVEACEQLFEEMP------------ERN 281

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN--TMIS-----GYIHVLDMEEASN 254
           + SWN +I  YA  G        F++ML       N  T+++       +  LD+ +  +
Sbjct: 282 VFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVH 341

Query: 255 LFVKMP--HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           ++             NA++  Y++ G +E A++ F+ M  K+L++WNSMI G  T+    
Sbjct: 342 VYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGA 401

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM------QIHQMVTK-TVIPDVP 365
            A+ LF QM++ GEKPD  TF  +L   +     HLG+        + MV + ++ P + 
Sbjct: 402 DALTLFHQMKINGEKPDGITFIGVLCSCT-----HLGLVEEGTSYFNSMVNEYSIAPQIE 456

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
               ++ ++ R G +  A    + M +  + V W A++G C
Sbjct: 457 HYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGAC 497



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 171/358 (47%), Gaps = 59/358 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y   R +  A KLF  M +R++V+W  MISGYI          AR LFD+ PERD 
Sbjct: 164 LIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVAL---ARRLFDLAPERDV 220

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V WN ++SGY + G+M+ A +LF++MP R+ +SWN M++G+  NGDV    + F+ MP R
Sbjct: 221 VLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPER 280

Query: 121 DSASLSALVSGLIQNGELDEAAR----------------VLVKCGSRCD--GGEDL---V 159
           +  S + L+ G   NG   E  R                 LV   S C   G  DL   V
Sbjct: 281 NVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWV 340

Query: 160 RAY-------------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
             Y             N LI  Y + G +E A ++F+ + +            +++++WN
Sbjct: 341 HVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDL------------KDLITWN 388

Query: 207 SMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH- 261
           SMI   A  G    A  +F QM     + D  ++  ++    H+  +EE ++ F  M + 
Sbjct: 389 SMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNE 448

Query: 262 ----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
               P    +  MV  + + G L+ A++F KRMP + + V W +++  C   K+ + A
Sbjct: 449 YSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLA 506


>gi|302764988|ref|XP_002965915.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
 gi|300166729|gb|EFJ33335.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
          Length = 912

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 203/574 (35%), Positives = 306/574 (53%), Gaps = 61/574 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI  Y+ + ++ +A  L   MPQ+D   W  M+S Y  SR  G +EEAR +FD    RD 
Sbjct: 270 MIQIYIDQGKIGEAENLSRRMPQQDPTLWTSMLSAY--SR-HGLVEEARRIFDRAARRDD 326

Query: 61  -VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            V+WN ++S YA+ G +  A   F  MP  +VV+W A+I+   QNG +  A   +D +P 
Sbjct: 327 EVSWNALLSAYAQAGHLHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPE 386

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           RD  + +AL+     NG+L E+ RV      R         ++  +I+ Y Q G V +AR
Sbjct: 387 RDLVAWTALIQAYGVNGKLTESKRVYALMPERNR------VSHTAMIIAYSQNGEVVQAR 440

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           K+ D +P + D+            +  SMI+ YA+ G +  ARE+F+ +   D  + N M
Sbjct: 441 KMLDTLP-DPDQS-----------TRTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAM 488

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           +  Y     ++ A  +F  +     ++WN MV+ YAQ GNL+ A   F  +P KN+VS N
Sbjct: 489 MEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHN 548

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
            MI     N D   A ++F  M    ++ D  T++                         
Sbjct: 549 VMIVAYAHNMDLAEARRIFYSM----DEKDTVTWT------------------------- 579

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
                    A++ M A+ G + EA+ +F +M   +NVVSWN++I G AS G    A+   
Sbjct: 580 ---------AMVAMVAQHGRLAEAQELFAKMPY-RNVVSWNSLIAGMASCGHGMAAVRYL 629

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             MR+    P +ITF+ +L AC+H GLVEEG  HF SM  ++G+ P  EH+  +VD++GR
Sbjct: 630 YVMRNEGAKPDHITFMGILIACSHVGLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLGR 689

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G+L  A +L++ MPF PD   WG+LLG+C+ H++V+L   AAE+L++ + ++S PYVLL
Sbjct: 690 AGQLGAARELLETMPFIPDVGAWGSLLGSCKTHSDVKLGTRAAESLLQFDDQSSGPYVLL 749

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            NMY+ VGR  DA  VR  MK+  +KK  G S +
Sbjct: 750 ANMYSSVGRVADALAVRNRMKARGVKKQPGVSLI 783



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 156/567 (27%), Positives = 263/567 (46%), Gaps = 96/567 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y +  ++  A+ +FD++P  +VVSWN +I+G+      GF+  A  +F  MP    
Sbjct: 84  LMQAYSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQH---GFMSNADEIFARMPRWSS 140

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN++I+GYA++G++  A  +F+  P  NV+SWNA+I+G+  N  +  A   FDR PGR
Sbjct: 141 SSWNSMITGYAQSGDLASATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVFDRAPGR 200

Query: 121 DSASLSALVSGLIQNGELDEAARV--------LVKCG---SRCDGGEDLVRA-------- 161
           D  S +A+++   Q+G+LD A  V        +V C      C   E L  A        
Sbjct: 201 DKISWNAMLTAYAQSGDLDSAKEVFDRTPQQDIVSCTLMIKACAVQEILGHAVEIFAAMP 260

Query: 162 ------YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
                 Y+ +I  Y  +G++ EA  L  ++P            +++   W SM+  Y++ 
Sbjct: 261 DRNAVSYSFMIQIYIDQGKIGEAENLSRRMP------------QQDPTLWTSMLSAYSRH 308

Query: 216 GDVVSAREIFEQMLER-DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
           G V  AR IF++   R D  SWN ++S Y     +  A + F +MP  D + W A+++  
Sbjct: 309 GLVEEARRIFDRAARRDDEVSWNALLSAYAQAGHLHLARSTFERMPRHDVVAWTALIAVS 368

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR---- 330
            Q G LE A   +  +P+++LV+W ++I     N     + +++  M      P+R    
Sbjct: 369 GQNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGKLTESKRVYALM------PERNRVS 422

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM 390
           HT   I    +G V     +Q  +M+     PD     ++I  YA+ G I +AR +F+ +
Sbjct: 423 HTAMIIAYSQNGEV-----VQARKMLDTLPDPDQSTRTSMIVAYAQNGYIKDAREMFDSI 477

Query: 391 K------------------------------LLKNVVSWNAMIGGCASHGFATEALELFK 420
           K                                K +VSWN M+   A  G   EA  +F 
Sbjct: 478 KNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFD 537

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
           S+    V+   +  +    A AH   + E R+ F SM  +  +      + ++V +V +H
Sbjct: 538 SIPHKNVVSHNVMIV----AYAHNMDLAEARRIFYSMDEKDTVT-----WTAMVAMVAQH 588

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLG 507
           GRL +A +L   MP+  +   W +L+ 
Sbjct: 589 GRLAEAQELFAKMPYR-NVVSWNSLIA 614



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 232/504 (46%), Gaps = 74/504 (14%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +I  Y K   +++A  +FN +P  NV S   ++  + +NGD+ +A   FD++P  +  
Sbjct: 51  NLIIQMYGKCSRIDDAQAVFNELPEPNVFSRCILMQAYSENGDLGSAKAIFDQIPSHN-- 108

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
                                              V ++N+LI G+ Q G +  A ++F 
Sbjct: 109 -----------------------------------VVSWNSLIAGFSQHGFMSNADEIFA 133

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           ++P            + +  SWNSMI  YA++GD+ SA  +F++  E +  SWN +I+GY
Sbjct: 134 RMP------------RWSSSSWNSMITGYAQSGDLASATAMFDRTPEHNVISWNALITGY 181

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                + EA  +F + P  D ++WNAM++ YAQ G+L+ A + F R PQ+++VS   MI 
Sbjct: 182 SDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGDLDSAKEVFDRTPQQDIVSCTLMIK 241

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363
            C   +    A+++F  M      PDR+  S    +   I    +G +   +  +    D
Sbjct: 242 ACAVQEILGHAVEIFAAM------PDRNAVSYSFMIQIYIDQGKIG-EAENLSRRMPQQD 294

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
             +  ++++ Y+R G + EAR IF+      + VSWNA++   A  G    A   F+ M 
Sbjct: 295 PTLWTSMLSAYSRHGLVEEARRIFDRAARRDDEVSWNALLSAYAQAGHLHLARSTFERMP 354

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
              V    + + ++++     G +EE       ++ +   E  +  + +L+   G +G+L
Sbjct: 355 RHDV----VAWTALIAVSGQNGQLEEAE-----VLYDLIPERDLVAWTALIQAYGVNGKL 405

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
            ++  +   MP E ++    A++ A   +  V  A+   + L   +P+ ST   ++   Y
Sbjct: 406 TESKRVYALMP-ERNRVSHTAMIIAYSQNGEVVQARKMLDTL--PDPDQSTRTSMIV-AY 461

Query: 544 ADVGRWDDANEVRLLMKSNNIKKP 567
           A  G   DA E+      ++IK P
Sbjct: 462 AQNGYIKDAREM-----FDSIKNP 480


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 217/627 (34%), Positives = 323/627 (51%), Gaps = 72/627 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           +I  Y     +  AR++FDE+PQRD + WNVM+ GY+ S                     
Sbjct: 186 LIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVN 245

Query: 40  -------------RGSGFLEEARYLFDIMP--ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                        RG   L    +   I    E D    NT+++ Y+K G + +A +LFN
Sbjct: 246 SVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFN 305

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
           +MP  + V+WN +I+G++QNG    A   F+ M       DS + ++ +  ++++G L  
Sbjct: 306 TMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRH 365

Query: 141 AARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
              V   +V+     D     V   + LI  Y + G VE ARK+F +  +          
Sbjct: 366 CKEVHSYIVRHRVPFD-----VYLKSALIDIYFKGGDVEMARKIFQQNTL---------- 410

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
              ++    +MI  Y   G  + A   F  +++      N++    +       A+    
Sbjct: 411 --VDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVP-NSLTMASVLPACAALAALKLG 467

Query: 258 KMPHPDTL---------TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           K  H D L           +A+   YA+ G L+LA +FF+RM + + + WNSMI+    N
Sbjct: 468 KELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQN 527

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPIN 367
              E A+ LF QM + G K D  + SS LS ++ +  L+ G ++H  V +     D  + 
Sbjct: 528 GKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVA 587

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           +ALI MY++CG +  AR +F  M   KN VSWN++I    +HG A E L+LF  M    V
Sbjct: 588 SALIDMYSKCGKLALARCVFNLMA-GKNEVSWNSIIAAYGNHGCARECLDLFHEMLRAGV 646

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
            P ++TF+ ++SAC HAGLV EG  +F  M  EYGI  R+EH+A +VD+ GR GRL +A 
Sbjct: 647 HPDHVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAF 706

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
           D IK MPF PD  VWG LLGACR+H NVELA++A+  L++++P+NS  YVLL N++AD G
Sbjct: 707 DAIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAG 766

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVD 574
            W    +VR LMK   ++K  GYSW+D
Sbjct: 767 EWGSVLKVRRLMKEKGVQKIPGYSWID 793



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 216/475 (45%), Gaps = 36/475 (7%)

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
           C   + V+  Y   G + +   LF  +   N + WN MI G    G    A+ F+ +M G
Sbjct: 79  CALSSRVLGLYVLCGRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLG 138

Query: 120 RDSASLSALVSGLIQN-GELDEAARVLV-KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
            + +        +I+  G L+     +V    +R  G    +   + LI  Y   G + +
Sbjct: 139 SNVSPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICD 198

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           AR++FD++P            +R+ + WN M+  Y K+GD  +A   F  M  R ++S  
Sbjct: 199 ARRVFDELP------------QRDTILWNVMLHGYVKSGDFNNAMGTFCGM--RTSYSMV 244

Query: 238 TMISGYIHVLDMEEASNLFVKMPHP-----------DTLTWNAMVSGYAQIGNLELALDF 286
             ++ Y  +L +      F                 D    N +V+ Y++ GNL  A   
Sbjct: 245 NSVT-YTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKL 303

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIV 344
           F  MPQ + V+WN +IAG   N   + A  LF  M   G KPD  TF+S L   + SG  
Sbjct: 304 FNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESG-- 361

Query: 345 DLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
            L    ++H  + +  +P DV + +ALI +Y + G +  AR IF++  L+ +V    AMI
Sbjct: 362 SLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLV-DVAVCTAMI 420

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
            G   HG   +A+  F+ +    ++P  +T  SVL ACA    ++ G++    ++ +  +
Sbjct: 421 SGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQ-L 479

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
           E  +   +++ D+  + GRL+ A +  + M  E D   W +++ +   +   E+A
Sbjct: 480 ENIVNVGSAITDMYAKCGRLDLAYEFFRRMS-ETDSICWNSMISSFSQNGKPEMA 533


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 191/614 (31%), Positives = 330/614 (53%), Gaps = 63/614 (10%)

Query: 9   REMAKARKLFDEMPQRDVVSWNVMISGYISSRGS-GFLEEARYLFDIMPERDCVTWNTVI 67
           R  A+ +KL   + +        + +  I++ G  G L+ AR +FD +P+ +  +WNT++
Sbjct: 19  RNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLL 78

Query: 68  SGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSA 127
           S Y+K G +++  R+F+SMP  +VVSWN+++SG+  NG ++ ++  ++ M    S +L+ 
Sbjct: 79  SAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNR 138

Query: 128 LVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG------YGQRGRVEEARKL 181
           +    +    +  + R  V  G +  G        + L VG      Y + G + +A ++
Sbjct: 139 ITFSTML---ILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRI 195

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           F++IP            ++NIV +N+MI    +   +V A ++F+ M E+D+ SW T+I+
Sbjct: 196 FEEIP------------EKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIIT 243

Query: 242 GYIHVLDMEEASNLFVKMP---------------------------------------HP 262
           G       +EA + F +M                                          
Sbjct: 244 GLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQD 303

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           +    +A++  Y +  N++ A   F++M  KN++SW +M+ G   N   E A+++F  MQ
Sbjct: 304 NIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQ 363

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIV 381
                PD  T  S++S  + +  L  G Q H Q +   +I  V ++NALIT+Y +CG++ 
Sbjct: 364 RNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLE 423

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
            A  +F EMK+ ++ VSW A++ G A  G A E + LF++M +  ++P  +TF+ VLSAC
Sbjct: 424 HAHQLFHEMKI-RDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSAC 482

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
           + AGLVE+G  +F+ MV E+ I P  +H+  ++D++ R GRLE+A + I  MPF PD   
Sbjct: 483 SRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIG 542

Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
           W  LL +CR++ N+E+ + AAE+L K+EP+N   Y+LL ++YA  G+WDD  ++R  M+ 
Sbjct: 543 WATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMRE 602

Query: 562 NNIKKPTGYSWVDF 575
             +KK  G+SW+ +
Sbjct: 603 MGVKKEPGHSWIKY 616


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 202/584 (34%), Positives = 326/584 (55%), Gaps = 29/584 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  Y   ++ AK   +F+ M    V     +    I S G+G +    ++  +    D 
Sbjct: 71  MLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGIGFHAHVLKLGHGSDA 130

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMP--ARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
              N VI  YA+ G +  A ++F+ +P   R V  WNAM+SG+ +      A   FD MP
Sbjct: 131 FVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMP 190

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
            R+  + +A+V+G  +  +L EAAR    C       E  V ++N ++ GY Q G  EE 
Sbjct: 191 ERNVITWTAMVTGYAKVKDL-EAARRYFDCMP-----ERSVVSWNAMLSGYAQNGLAEEV 244

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA----REIFEQMLERDTF 234
            +LFD++         N   + +  +W ++I   +  GD   A    R + ++ ++ + F
Sbjct: 245 LRLFDEMV--------NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCF 296

Query: 235 SWNTMISGYIHVLDMEEASNLFVKM-PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
               ++  Y     +  A  +F ++  + +++TWNAM+S Y ++GNL+ A + F  MP +
Sbjct: 297 VRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGR 356

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           N+V+WNSMIAG   N     AI+LF +M   +   PD  T  S++S    +  L LG  +
Sbjct: 357 NVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWV 416

Query: 353 HQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
            + +T+  I   +  +NA+I MY+RCG++ +A+ +F+EM   ++VVS+N +I G A+HG 
Sbjct: 417 VRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMAT-RDVVSYNTLISGFAAHGH 475

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             EA+ L  +M+   + P  +TFI VL+AC+HAGL+EEGR+ F+S+      +P I+H+A
Sbjct: 476 GVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYA 530

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            +VD++GR G LEDA   ++ MP EP   V+G+LL A R+H  VEL ++AA  L ++EP+
Sbjct: 531 CMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPD 590

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           NS  ++LL N+YA  GRW D   +R  MK   +KK TG+SWV++
Sbjct: 591 NSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEY 634



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 116/268 (43%), Gaps = 20/268 (7%)

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F      N+  + SM+      +D+   + +F  MQ  G +PD   +  IL  S+G   
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVY-PILIKSAG--- 111

Query: 346 LHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEM-KLLKNVVSWNAMI 403
            + G+  H  V K     D  + NA+I MYAR G I  AR +F+E+    + V  WNAM+
Sbjct: 112 -NGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMV 170

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
            G        +A  LF  M    V    IT+ ++++  A    +E  R++F  M      
Sbjct: 171 SGYWKWESEGQAQWLFDVMPERNV----ITWTAMVTGYAKVKDLEAARRYFDCMP----- 221

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNVELAQV 520
           E  +  + +++    ++G  E+ + L   M     EPD+  W  ++ AC    +  LA  
Sbjct: 222 ERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAAS 281

Query: 521 AAEALMKVEPE-NSTPYVLLYNMYADVG 547
               L + + + N      L +MYA  G
Sbjct: 282 LVRTLHQKQIQLNCFVRTALLDMYAKCG 309


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 213/615 (34%), Positives = 312/615 (50%), Gaps = 96/615 (15%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF----NSMPARNVVSWNAM 97
           +G++ +A+YLFD +P RDC+ WN +++GY K G+   AL  F    NS    N VS+  +
Sbjct: 225 NGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCL 284

Query: 98  IS---------------------GFLQNGDVANAI--------------EFFDRMPGRDS 122
           +S                     GF  +  VAN I              + FD MP  D+
Sbjct: 285 LSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDT 344

Query: 123 ASLSALVSGLIQNGELDEAA---RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            + + L++G +QNG  DEA    + +V  G + D        + + +    + G ++  +
Sbjct: 345 VTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDS-----ITFASFLPSVLKSGSLKYCK 399

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           ++   I          V F   + S  +++  Y K GDV  A + F+Q    D      M
Sbjct: 400 EVHSYIV------RHGVPFDVYLKS--ALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAM 451

Query: 240 ISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSG---------------------- 273
           ISGY+      EA NLF  +      P+ LT  +++                        
Sbjct: 452 ISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGL 511

Query: 274 -------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                        YA+ G L+LA  FF+RMP K+ V WN MI     N   E AI LF Q
Sbjct: 512 ENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQ 571

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGA 379
           M   G K D  + S+ LS  +    L+ G ++H  V + + I D  + + LI MY++CG 
Sbjct: 572 MGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGK 631

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           +  AR +F+ M   KN VSWN++I    +HG   E L+LF  M    + P ++TF+ ++S
Sbjct: 632 LALARSVFDMMDW-KNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMS 690

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           AC HAGLV+EG  +F+ M  EYGI  R+EHFA +VD+ GR GRL +A D IK MPF PD 
Sbjct: 691 ACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDA 750

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
             WG+LLGACR+H NVELA++A++ L++++P NS  YVLL N++A  G W+   +VR LM
Sbjct: 751 GTWGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLM 810

Query: 560 KSNNIKKPTGYSWVD 574
           K   ++K  GYSW+D
Sbjct: 811 KEKGVQKIPGYSWID 825



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 122/491 (24%), Positives = 201/491 (40%), Gaps = 94/491 (19%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           +   G +   L+L  S+P      WN +I GF   G    A+ FF RM G + A      
Sbjct: 127 FKDVGNLFCRLQLCYSLP------WNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTF 180

Query: 130 SGLIQN-GELDEAARV-LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV 187
             +I+  G L+      +V   +R  G    +   ++LI  Y   G + +A+ LFD++PV
Sbjct: 181 PYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPV 240

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM------------------- 228
                       R+ + WN M+  Y K GD  SA   F++M                   
Sbjct: 241 ------------RDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVC 288

Query: 229 --------------------LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN 268
                                E D    NT+I+ Y    ++ +A  +F  MP  DT+TWN
Sbjct: 289 ATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWN 348

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
            +++GY Q                               N   + A+ LF  M   G K 
Sbjct: 349 GLIAGYVQ-------------------------------NGFTDEAVALFKAMVTSGVKL 377

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIF 387
           D  TF+S L        L    ++H  + +  +P DV + +AL+ +Y + G +  A   F
Sbjct: 378 DSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTF 437

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
           ++  L+ +V    AMI G   +G   EAL LF+ +    ++P  +T  SVL ACA    +
Sbjct: 438 QQNTLV-DVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASL 496

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           + G++    ++ + G+E   +  +S+  +  + GRL+ A    + MP + D   W  ++ 
Sbjct: 497 KLGKELHCDILKK-GLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVK-DSVCWNLMIV 554

Query: 508 ACRVHNNVELA 518
           +   +   ELA
Sbjct: 555 SFSQNGKPELA 565



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 122/271 (45%), Gaps = 35/271 (12%)

Query: 239 MISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
           M+  Y+     ++  NLF ++    +L WN ++ G++ +G  + AL FF RM   N+   
Sbjct: 117 MLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVA-- 174

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
                                        PD++TF  ++    G+ ++ L   +H++   
Sbjct: 175 -----------------------------PDKYTFPYVIKACGGLNNVPLCKMVHELARS 205

Query: 359 TVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
                D+ I ++LI +Y   G I +A+ +F+E+  +++ + WN M+ G   +G    AL 
Sbjct: 206 MGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELP-VRDCILWNVMLNGYVKNGDFNSALG 264

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
            F+ MR+  V P  ++F+ +LS CA  G+V  G Q    +V   G E       +++ + 
Sbjct: 265 TFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQ-LHGLVIRSGFESDPTVANTIITMY 323

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
            + G L DA  +   MP + D   W  L+  
Sbjct: 324 SKCGNLFDARKIFDIMP-QTDTVTWNGLIAG 353


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 214/640 (33%), Positives = 327/640 (51%), Gaps = 110/640 (17%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y K      ARKLFDEMP R   SWN ++S Y + RG   ++ +   FD +P+RD V+W 
Sbjct: 59  YSKTGYALHARKLFDEMPLRTAFSWNTVLSAY-AKRGD--MDSSCEFFDRLPQRDSVSWT 115

Query: 65  TVISGYAKTGEMEEALRLFNSM------PAR----------------------------- 89
           T+I GY   G+  +A+R+   M      P++                             
Sbjct: 116 TMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKL 175

Query: 90  ----NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
               NV   N++++ + + GD   A   FDRM  +D +S +A+++  +Q G++D A    
Sbjct: 176 GLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQF 235

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP----VNCDR---------- 191
            +   R     D+V  +N++I GY QRG    A  +F K+     ++ DR          
Sbjct: 236 EQMAER-----DIV-TWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSAC 289

Query: 192 --------GEG------NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD--TFS 235
                   GE          F  + +  N++I  Y++ G V +AR + EQ   +D     
Sbjct: 290 ANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEG 349

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           +  ++ GYI + DM EA N+F  +   D + W AM+ GY Q G                 
Sbjct: 350 FTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGL---------------- 393

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
                          Y  AI LF  M  E ++P+ +T +++LS++S +  L  G QIH  
Sbjct: 394 ---------------YGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGS 438

Query: 356 VTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
             K+  I  V ++NALITMYA+ G+I  A   F+ ++  ++ VSW +MI   A HG A E
Sbjct: 439 AVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEE 498

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           ALELF++M    + P +IT++ V SAC HAGLV +GRQ+F  M +   I P + H+A +V
Sbjct: 499 ALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMV 558

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D+ GR G L++A + I+ MP EPD   WG+LL ACRV+ N++L +VAAE L+ +EPENS 
Sbjct: 559 DLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSG 618

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            Y  L N+Y+  G+W++A ++R  MK   +KK  G+SW++
Sbjct: 619 AYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIE 658



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 137/306 (44%), Gaps = 31/306 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           ++ GY+K  +M +A+ +FD +  RDVV+W  MI GY      G   EA  LF  M     
Sbjct: 353 LLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGY---EQHGLYGEAINLFRSMVGEEQ 409

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMISGFLQNGDVANAIE 112
             +  T   ++S  +    +    ++  S        +V   NA+I+ + + G + +A  
Sbjct: 410 RPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASR 469

Query: 113 FFDRMPG-RDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVG 168
            FD +   RD+ S ++++  L Q+G  +EA  +   ++  G R D        Y  +   
Sbjct: 470 AFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDH-----ITYVGVFSA 524

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
               G V + R+ FD +  + D      +    +  +  M+  + +AG +  A+E  E+M
Sbjct: 525 CTHAGLVNQGRQYFDMMK-DVD------KIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM 577

Query: 229 -LERDTFSWNTMISG---YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
            +E D  +W +++S    Y ++   + A+   + +   ++  ++A+ + Y+  G  E A 
Sbjct: 578 PIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAA 637

Query: 285 DFFKRM 290
              K M
Sbjct: 638 KIRKSM 643


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 205/631 (32%), Positives = 335/631 (53%), Gaps = 81/631 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I+ ++K   +  A K+F+ +P+RD+++W  MI+G    R     ++A  LF +M E   
Sbjct: 246 LINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQ---FKQACNLFQVMEEEGV 302

Query: 59  --DCVTW-----------------------------------NTVISGYAKTGEMEEALR 81
             D V +                                     ++S Y K G ME+AL 
Sbjct: 303 QPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALE 362

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVSGLIQN 135
           +FN +  RNVVSW AMI+GF Q+G +  A  FF++M      P R   +  +++    + 
Sbjct: 363 VFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNR--VTFMSILGACSRP 420

Query: 136 GELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
             L +  ++   ++K G   D      R    L+  Y + G + +AR +F++I       
Sbjct: 421 SALKQGRQIHDRIIKAGYITDD-----RVRTALLSMYAKCGSLMDARNVFERIS------ 469

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
                 K+N+V+WN+MI  Y +     +A   F+ +L+      ++  +  ++V    +A
Sbjct: 470 ------KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDA 523

Query: 253 -------SNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
                   +L ++     D    NA+VS +   G+L  A++ F  MP+++LVSWN++IAG
Sbjct: 524 LELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAG 583

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-D 363
              + + + A   F  MQ  G KPD+ TF+ +L+  +    L  G ++H ++T+  +  D
Sbjct: 584 FVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCD 643

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           V +   LI+MY +CG+I +A ++F  +   KNV SW +MI G A HG   EALELF  M+
Sbjct: 644 VVVGTGLISMYTKCGSIDDAHLVFHNLPK-KNVYSWTSMITGYAQHGRGKEALELFCQMQ 702

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
              V P +ITF+  LSACAHAGL++EG  HF+SM  ++ IEPR+EH+  +VD+ GR G L
Sbjct: 703 QEGVKPDWITFVGALSACAHAGLIKEGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLL 761

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
            +A++ I  M  +PD  +WGALLGAC+VH +VELA+  A+  ++++P +   YV+L N+Y
Sbjct: 762 HEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIY 821

Query: 544 ADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A  G W +  ++R +M    + K  G SW++
Sbjct: 822 AAAGMWKEVTKMRKVMLDRGVVKKPGQSWIE 852



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 151/569 (26%), Positives = 253/569 (44%), Gaps = 81/569 (14%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D   WN +IS YAK G    A ++F+ MP ++V SWN ++ G++Q+     A    ++M 
Sbjct: 138 DIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMV 197

Query: 119 GR----DSASLSALVSGLIQNGELDEAAR---VLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
                 D  +   +++       +D+      +++  G   D     +     LI  + +
Sbjct: 198 QDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTD-----LFVGTALINMHIK 252

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G V++A K+F+ +P            +R++++W SMI   A+      A  +F+ M E 
Sbjct: 253 CGGVDDALKVFNNLP------------RRDLITWTSMITGLARHRQFKQACNLFQVMEEE 300

Query: 232 ----DTFSWNTMISGYIHVLDMEEASNLFVKMPHP--DTLTW--NAMVSGYAQIGNLELA 283
               D  ++ +++    H   +E+   +  +M     DT  +   A++S Y + G++E A
Sbjct: 301 GVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDA 360

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
           L+ F  +  +N+VSW +MIAG   +   E A   F +M   G +P+R TF SIL   S  
Sbjct: 361 LEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRP 420

Query: 344 VDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             L  G QIH  + K   I D  +  AL++MYA+CG++++AR +FE +   +NVV+WNAM
Sbjct: 421 SALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERIS-KQNVVAWNAM 479

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I     H     A+  F+++    + P   TF S+L+ C     +E G+   +S++   G
Sbjct: 480 ITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKW-VQSLIIRAG 538

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP---------------------------- 494
            E  +    +LV +    G L  AM+L   MP                            
Sbjct: 539 FESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFK 598

Query: 495 ------FEPDKAVWGALLGAC----RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
                  +PD+  +  LL AC     +     L  +  EA +  +    T    L +MY 
Sbjct: 599 MMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTG---LISMYT 655

Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
             G  DDA+ V      +N+ K   YSW 
Sbjct: 656 KCGSIDDAHLV-----FHNLPKKNVYSWT 679



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 227/458 (49%), Gaps = 57/458 (12%)

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           +++   +A ++ L + G+L EA  VL+   S     +   + Y++L+    +   + +  
Sbjct: 67  KNTQRANAFLNRLSKAGQLSEAMLVLLSVDS--PHIQIHRQTYSSLLQLCIKHKNLGDGE 124

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           ++ + I  +        + + +I  WN +I  YAK G+  SA++IF++M ++D +SWN +
Sbjct: 125 RIHNHIKFS--------KIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLL 176

Query: 240 ISGYIHVLDMEEASNLFVKMPH----PDTLTW---------------------------- 267
           + GY+     EEA  L  +M      PD  T+                            
Sbjct: 177 LGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGW 236

Query: 268 -------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                   A+++ + + G ++ AL  F  +P+++L++W SMI G   ++ ++ A  LF  
Sbjct: 237 DTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQV 296

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGA 379
           M+ EG +PD+  F S+L   +    L  G ++H +M    +  ++ +  AL++MY +CG+
Sbjct: 297 MEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGS 356

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           + +A  +F  +K  +NVVSW AMI G A HG   EA   F  M    + P  +TF+S+L 
Sbjct: 357 MEDALEVFNLVK-GRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILG 415

Query: 440 ACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           AC+    +++GRQ H + +   Y  + R+    +L+ +  + G L DA ++ + +  + +
Sbjct: 416 ACSRPSALKQGRQIHDRIIKAGYITDDRVR--TALLSMYAKCGSLMDARNVFERIS-KQN 472

Query: 499 KAVWGALLGACRVHNNVELAQVAAEALMK--VEPENST 534
              W A++ A   H   + A    +AL+K  ++P++ST
Sbjct: 473 VVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSST 510



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 7/166 (4%)

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC-AHAGLVEEGR 451
           +KN    NA +   +  G  +EA+ +  S+ S  +     T+ S+L  C  H  L +  R
Sbjct: 66  IKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGER 125

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
            H  + +    I+P I  +  L+ +  + G    A  +   MP + D   W  LLG    
Sbjct: 126 IH--NHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMP-DKDVYSWNLLLGGYVQ 182

Query: 512 HNNVELAQVAAEALMK--VEPENSTPYVLLYNMYADVGRWDDANEV 555
           H   E A    E +++  V+P+  T +V + N  AD    D   E+
Sbjct: 183 HRRYEEAFRLHEQMVQDGVKPDKYT-FVYMLNACADAKNVDKGGEL 227


>gi|125550574|gb|EAY96283.1| hypothetical protein OsI_18181 [Oryza sativa Indica Group]
          Length = 661

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 198/564 (35%), Positives = 308/564 (54%), Gaps = 32/564 (5%)

Query: 17  LFDEMPQRD-VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC--VTWNTV-ISGYAK 72
           +FD MP+RD  V++  M+  ++  R    L  A  L+   P  DC  +  +TV + GY K
Sbjct: 80  MFDGMPRRDDAVAYAAMVGIHLWDRD---LPHAEALYRAAPP-DCRGIHLDTVMLDGYVK 135

Query: 73  TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGL 132
            G+++ A RLF+ M  +NVV+W  M+SG+ + G V  A   FD MP R+  S + +V G 
Sbjct: 136 AGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGY 195

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
             NG L EA  +  K   R       V A+  ++  Y   G ++EA +LF+++P      
Sbjct: 196 AHNGMLREAREMFDKMPERN------VVAWTVMVKAYVDNGCIQEALELFNRMP------ 243

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
                 + N  SWN+M      AG V  A ++F++M  ++  SW  M++G      +  A
Sbjct: 244 ------QMNSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRA 297

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
              F +MP  D   WN+M++ Y   G +  A   F  MP KNLV+WN +I G   N   +
Sbjct: 298 REFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKD 357

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALI 371
            A++LF+ M      PD  T  S+L +S   +++    QIH + TK    P+  + N L+
Sbjct: 358 EALRLFLLMLRSAVSPDSTTLISVLVVSESTMEVR---QIHGLSTKLGYQPETNLGNTLV 414

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
           +MY+R G +  A + F  +   K+ ++W +MI   A+HG A  AL+ F  M      P+ 
Sbjct: 415 SMYSRSGDLSSAWLAFRRLNE-KDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSS 473

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
            TF +VLSAC H GLVE+GR+ FKS+ + YG+EP IEH++ LVD++GR G + +A +++ 
Sbjct: 474 TTFTAVLSACNHVGLVEKGRKIFKSISHVYGLEPTIEHYSCLVDLLGRAGYVREAKEVVD 533

Query: 492 GMPFE-PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           GM  +  D+A+ G LLG+C  HN VE+ +   E L+K++P  S  Y LL N++A  G W+
Sbjct: 534 GMQRDMCDEAILGTLLGSCMTHNEVEVGRAVGEDLVKIDPSGSGGYTLLANVFASGGMWN 593

Query: 551 DANEVRLLMKSNNIKKPTGYSWVD 574
           +   V  +MK + +KK  G+S ++
Sbjct: 594 EVASVWKIMKGSKVKKTPGFSQIE 617



 Score =  228 bits (580), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 231/448 (51%), Gaps = 60/448 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+ GYVK  ++ +AR+LFD M  ++VV+W  M+SGY  +   G ++EAR LFD+MP R+ 
Sbjct: 129 MLDGYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRA---GLVDEARRLFDLMPYRNV 185

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +W T++ GYA  G + EA  +F+ MP RNVV+W  M+  ++ NG +  A+E F+RMP  
Sbjct: 186 FSWTTMVQGYAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQM 245

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +S S +A+ +GL+  G++D+A ++  K   +       V ++  ++ G  Q G V  AR+
Sbjct: 246 NSYSWNAMATGLMSAGKVDDAVQLFDKMPHKN------VVSWTIMVTGLAQNGFVSRARE 299

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            FD++P            K++I +WNSMI  Y   G V  A+ +F+ M  ++  +WN +I
Sbjct: 300 FFDRMP------------KKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIII 347

Query: 241 SGYIHVLDMEEASNLFVKM------P------------------------------HPDT 264
            GY      +EA  LF+ M      P                               P+T
Sbjct: 348 DGYSMNNLKDEALRLFLLMLRSAVSPDSTTLISVLVVSESTMEVRQIHGLSTKLGYQPET 407

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
              N +VS Y++ G+L  A   F+R+ +K+ ++W SMI     +     A++ F QM   
Sbjct: 408 NLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQMLRC 467

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVE 382
           G KP   TF+++LS  + +  +  G +I + ++    + P +   + L+ +  R G + E
Sbjct: 468 GYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVYGLEPTIEHYSCLVDLLGRAGYVRE 527

Query: 383 ARIIFEEMKL-LKNVVSWNAMIGGCASH 409
           A+ + + M+  + +      ++G C +H
Sbjct: 528 AKEVVDGMQRDMCDEAILGTLLGSCMTH 555


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 187/515 (36%), Positives = 297/515 (57%), Gaps = 23/515 (4%)

Query: 67  ISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF---DRMPGRDSA 123
           I+  ++   +  A +LF+ +P  N  +WNAM  G+LQNG   + +  F   +R+ G  + 
Sbjct: 51  ITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNC 110

Query: 124 SLSALVSGLIQNGELDEAAR--VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
               ++  +   G+L E  R    V C +   G +       +LI  Y ++G VE+A K+
Sbjct: 111 FTFPMI--IKSCGKL-EGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKV 167

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           F ++             +RN+V W ++I  Y   GDVVS R +F+   ERD   W+ +IS
Sbjct: 168 FGEM------------HERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLIS 215

Query: 242 GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           GYI   +M  A  LF KMP+ DT++WNAM++GYA  G +E+    F  MP++N+ SWN +
Sbjct: 216 GYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGL 275

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEK-PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           I G   N  +   ++ F +M VEG   P+  T  ++LS  S +  L +G  +H       
Sbjct: 276 IGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIG 335

Query: 361 IP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              ++ + N LI MYA+CG I  A ++F  +   K+++SWN +I G A HG A +AL +F
Sbjct: 336 YKGNLFVGNVLIDMYAKCGVIENAVVVFNCLD-RKDIISWNTIINGLAIHGHAPDALGMF 394

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M+S    P  +TF+ +LSAC H GLV++G  +FKSMV+ Y I P+IEH+  +VD++GR
Sbjct: 395 DRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGR 454

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G L+ A++ I+ MP EPD  +W ALLGACR++ NVE+A++A + L+++EP N   +V++
Sbjct: 455 AGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIELEPNNPANFVMV 514

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+Y D+GR +D   +++ M+    +K  G S ++
Sbjct: 515 SNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIE 549



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 208/461 (45%), Gaps = 81/461 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD----IMP 56
            I+   + + +  ARKLFD++PQ +  +WN M  GY+ +   G   +   LF     I  
Sbjct: 50  FITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQN---GHHRDTVVLFGELNRIAG 106

Query: 57  ERDCVTWNTVISG-----------------------------------YAKTGEMEEALR 81
             +C T+  +I                                     Y+K G +E+A +
Sbjct: 107 MPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYK 166

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           +F  M  RNVV W A+I+G++  GDV +    FD  P RD    S L+SG I++  +  A
Sbjct: 167 VFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAA 226

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +  K  +R         ++N ++ GY   G VE   K+FD++P            +RN
Sbjct: 227 RELFDKMPNRD------TMSWNAMLNGYAVNGEVEMFEKVFDEMP------------ERN 268

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLER-----DTFSWNTMISG--YIHVLDMEEASN 254
           + SWN +I  Y K G      E F++ML       + F+   ++S    +  LDM +  +
Sbjct: 269 VFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVH 328

Query: 255 LFVKMP--HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           ++ +      +    N ++  YA+ G +E A+  F  + +K+++SWN++I G   +    
Sbjct: 329 VYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAP 388

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG------MQIHQMVTK-TVIPDVP 365
            A+ +F +M+ EGE+PD  TF  ILS  +     H+G      +    MV   +++P + 
Sbjct: 389 DALGMFDRMKSEGEEPDGVTFVGILSACT-----HMGLVKDGFLYFKSMVDHYSIVPQIE 443

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
               ++ +  R G + +A     +M +  + V W A++G C
Sbjct: 444 HYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGAC 484



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 178/378 (47%), Gaps = 62/378 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K+  +  A K+F EM +R+VV W  +I+GYI     G +   R LFD+ PERD 
Sbjct: 151 LIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILC---GDVVSGRRLFDLAPERDV 207

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V W+ +ISGY ++  M  A  LF+ MP R+ +SWNAM++G+  NG+V    + FD MP R
Sbjct: 208 VMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPER 267

Query: 121 DSASLSALVSGLIQNGELDEAAR----------------VLVKCGSRCD--GGEDL---V 159
           +  S + L+ G ++NG   E                    LV   S C   G  D+   V
Sbjct: 268 NVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWV 327

Query: 160 RAY-------------NTLIVGYGQRGRVEEARKLFDKIPVNC-DRGEGNVRFKRNIVSW 205
             Y             N LI  Y + G +E A  +F     NC DR        ++I+SW
Sbjct: 328 HVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVF-----NCLDR--------KDIISW 374

Query: 206 NSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           N++I   A  G    A  +F++M     E D  ++  ++S   H+  +++    F  M  
Sbjct: 375 NTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVD 434

Query: 262 -----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAI 315
                P    +  MV    + G L+ AL+F ++MP + + V W +++  C   K+ E A 
Sbjct: 435 HYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIA- 493

Query: 316 KLFIQMQVEGEKPDRHTF 333
           +L +Q  +E E  +   F
Sbjct: 494 ELALQRLIELEPNNPANF 511



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 123/297 (41%), Gaps = 25/297 (8%)

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
           +I    LE + F     I+       +  A  LF K+P P+T TWNAM  GY Q G+   
Sbjct: 34  QIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRD 93

Query: 283 ALDFFKRMPQ----KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
            +  F  + +     N  ++  +I  C   +      ++       G K +    +S++ 
Sbjct: 94  TVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLID 153

Query: 339 MSS--GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
           M S  G V+       +++  +    +V +  A+I  Y  CG +V  R +F ++   ++V
Sbjct: 154 MYSKKGCVE-----DAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLF-DLAPERDV 207

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
           V W+ +I G         A ELF  M +   +    ++ ++L+  A  G VE   + F  
Sbjct: 208 VMWSVLISGYIESKNMAAARELFDKMPNRDTM----SWNAMLNGYAVNGEVEMFEKVFDE 263

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE----PDKAVWGALLGAC 509
           M      E  +  +  L+    ++G   + ++  K M  E    P+     A+L AC
Sbjct: 264 MP-----ERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSAC 315


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 218/711 (30%), Positives = 352/711 (49%), Gaps = 138/711 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS---RGS--GFLEEAR------ 49
           MISGY    EM  A + F + P+RDVVSWN M+SG++ +   R S   FL+  R      
Sbjct: 115 MISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGF 174

Query: 50  --YLFDIMPE------------------------RDCVTWNTVISGYAKTGEMEEALRLF 83
               F ++ +                        +D VT + ++  YAK   ++++L++F
Sbjct: 175 DQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIF 234

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG--------------RDSASLSALV 129
           + +P +N V W+A+I+G +QN +    +E F  M                R  A LSAL 
Sbjct: 235 SEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALK 294

Query: 130 SGLIQNG---ELDEAARVLV---------KCGSRCDGG-------EDLVRAYNTLIVGYG 170
            G   +    + D  + + V         KCGS  D         +  ++ YN +IVG  
Sbjct: 295 VGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCV 354

Query: 171 QRGRVEEARKLF----------DKIPVN-----CDRGEGNV------------RFKRNIV 203
           +  +  EA + F          ++I ++     C   +G++              + NI 
Sbjct: 355 RNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNIC 414

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP--- 260
             NS++  Y K   +  A  +F++M  RD  SWN +I+ +    + EE  NLF  M    
Sbjct: 415 VANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLR 474

Query: 261 -HPDTLTWN-----------------------------------AMVSGYAQIGNLELAL 284
             PD  T+                                    A++  Y + G +E A 
Sbjct: 475 MEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAK 534

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
               R+ Q+ +VSWN++IAG    K  E A   F +M     KPD  T++ +L   + + 
Sbjct: 535 KIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLA 594

Query: 345 DLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
            + LG QIH Q++   +  DV I + L+ MY++CG + ++ ++FE+    K+ V+WNAMI
Sbjct: 595 SVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPN-KDFVTWNAMI 653

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
            G A HG   EAL  F+ M+   V P + TF+S+L ACAH G +++G  +F +M+ EYG+
Sbjct: 654 CGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGL 713

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE 523
           EP+IEH++ ++DI+GR GR+ +A+ LI+ MPFE D  +W  LL  C++H N+E+A+ A  
Sbjct: 714 EPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATN 773

Query: 524 ALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A++++EPE+S+  +LL N+YAD G W   +E+R +M+ N +KK  G SW++
Sbjct: 774 AILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIE 824



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 141/544 (25%), Positives = 261/544 (47%), Gaps = 62/544 (11%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           DV   N ++  Y+       L  A  +F+ M +RD +++NT+ISGYA  GEM  A   F 
Sbjct: 77  DVYISNCLMKMYLRC---SHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFY 133

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP-----GRDSASLSALVSG--LIQNGE 137
             P R+VVSWN+M+SGFLQNG+   +I+ F  M      G D  + + ++    ++++G 
Sbjct: 134 DTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGG 193

Query: 138 LD-EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
           L  +   ++V+ G   D     V   + L+  Y +  R++++ K+F +IPV         
Sbjct: 194 LGIQVHGLIVRMGFYKD-----VVTGSALLDMYAKCKRLDDSLKIFSEIPV--------- 239

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE--------------RDTFSWNTMISG 242
              +N V W+++I    +  + +   E+F++M +              R     + +  G
Sbjct: 240 ---KNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVG 296

Query: 243 ---YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
              + H L  +  S++ V           A +  YA+ G+L  A   F  +P+ +L  +N
Sbjct: 297 TQLHAHALKCDFGSDITVG---------TATLDMYAKCGSLADAQRIFNSLPKHSLQCYN 347

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           ++I GC  N+    A++ F  +   G   +  + S   S  + I     G Q+H +  K+
Sbjct: 348 AIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKS 407

Query: 360 VI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
            +  ++ + N+++ MY +C A+ EA  +F+EM+  ++ VSWNA+I     +G   E L L
Sbjct: 408 TLRSNICVANSILDMYGKCEALSEACCMFDEME-RRDAVSWNAVIAAHEQNGNEEETLNL 466

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIV 477
           F SM   ++ P   T+ SVL AC+    +  G + H + + +  G++  +    +L+D+ 
Sbjct: 467 FASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVG--GALIDMY 524

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENSTP 535
            + G +E+A  +   +  +     W A++    +  + E A      ++K  V+P+N T 
Sbjct: 525 CKCGMIEEAKKIHDRIE-QQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTY 583

Query: 536 YVLL 539
            ++L
Sbjct: 584 AIVL 587



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 156/309 (50%), Gaps = 7/309 (2%)

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
           K G    AR I    +  D +  N ++  Y+    +  A  +F KM   D +++N M+SG
Sbjct: 60  KPGKQAHARMIVSGFIP-DVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISG 118

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHT 332
           YA  G + LA +FF   P++++VSWNSM++G   N +   +I +F+ M + E    D+ T
Sbjct: 119 YADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTT 178

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMK 391
           F+ +L   S + D  LG+Q+H ++ +     DV   +AL+ MYA+C  + ++  IF E+ 
Sbjct: 179 FAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIP 238

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
            +KN V W+A+I GC  +      LELFK M+   +  +   + SV  +CA    ++ G 
Sbjct: 239 -VKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGT 297

Query: 452 Q-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
           Q H  ++  ++G +  +    + +D+  + G L DA  +   +P    +     ++G  R
Sbjct: 298 QLHAHALKCDFGSDITVG--TATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVR 355

Query: 511 VHNNVELAQ 519
                E  Q
Sbjct: 356 NEKGFEALQ 364


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 205/603 (33%), Positives = 317/603 (52%), Gaps = 79/603 (13%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N ++S Y      G L +AR +FD +P R+  ++N ++S YA+ G  +EA  LF ++P  
Sbjct: 56  NTLVSTYARL---GRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDP 112

Query: 90  NVVSWNAMISGFLQNG--DVANAIEFFDRMPGRD--------SASLSALVSGLIQNGELD 139
           +  S+NA+++   ++G    A+A+ F   M   D        +++LSA  +   ++    
Sbjct: 113 DQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAE--KDSRTG 170

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           E    LV   +R    +D V   + L+  Y +  R E+AR++FD +P            +
Sbjct: 171 EQVHGLV---ARSPHADD-VHIRSALVDMYAKCERPEDARRVFDAMP------------E 214

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM------------------------------- 228
           RN+VSWNS+I CY + G V  A  +F +M                               
Sbjct: 215 RNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQV 274

Query: 229 ---------LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279
                    L  D    N ++  Y       EA  +F  MP    ++  ++++GYA+  N
Sbjct: 275 HAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSAN 334

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           +E A   F +M +KN+++WN +IA    N + E AI+LF+Q++ +   P  +T+ ++L+ 
Sbjct: 335 VEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNA 394

Query: 340 SSGIVDLHLGMQIHQMVTKTVI-------PDVPINNALITMYARCGAIVEARIIFEEMKL 392
              I DL LG Q H  V K           DV + N+L+ MY + G+I +   +FE M  
Sbjct: 395 CGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAA 454

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
             NV SWNAMI G A +G A +AL LF+ M      P  +T I VLSAC H+GLV+EGR+
Sbjct: 455 RDNV-SWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRR 513

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           +F SM  ++GI P  +H+  +VD++GR G L++A +LI  MP EPD  +W +LLGACR+H
Sbjct: 514 YFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLH 573

Query: 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
            NVEL +  A  L +++P+NS PYVLL NMYA++G+W +   VR  MK   + K  G SW
Sbjct: 574 KNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSW 633

Query: 573 VDF 575
           ++ 
Sbjct: 634 IEI 636



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 134/533 (25%), Positives = 221/533 (41%), Gaps = 141/533 (26%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++S Y +   +  AR++FDE+P R+  S+N ++S Y      G  +EAR LF+ +P+ D 
Sbjct: 58  LVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYAR---LGRPDEARALFEAIPDPDQ 114

Query: 61  VTWNTVISGYAK--TGEMEEALRLFNSMPAR----NVVSWNAMIS----------GFLQN 104
            ++N V++  A+   G   +ALR   +M A     N  S+ + +S          G   +
Sbjct: 115 CSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVH 174

Query: 105 GDVA-------------------------NAIEFFDRMPGRDSASLSALVSGLIQNGELD 139
           G VA                         +A   FD MP R+  S ++L++   QNG + 
Sbjct: 175 GLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVG 234

Query: 140 EA-------------------ARVLVKCGS---------------RCDGGEDLVRAYNTL 165
           EA                   + V+  C                 +CD   D +   N L
Sbjct: 235 EALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNAL 294

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           +  Y + GR  EAR +FD +P             R+IVS  S++  YAK+ +V  A+ +F
Sbjct: 295 VDMYAKCGRTWEARCIFDSMP------------SRSIVSETSILTGYAKSANVEDAQVVF 342

Query: 226 EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM-------------------------- 259
            QM+E++  +WN +I+ Y    + EEA  LFV++                          
Sbjct: 343 SQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQ 402

Query: 260 -------------------PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
                              P  D    N++V  Y + G+++     F+RM  ++ VSWN+
Sbjct: 403 LGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNA 462

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM--SSGIVDLHLGMQIHQMVTK 358
           MI G   N   + A+ LF +M    E PD  T   +LS    SG+VD   G +    +T+
Sbjct: 463 MIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVD--EGRRYFHSMTE 520

Query: 359 T--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
              + P       ++ +  R G + EA  +  +M +  + V W +++G C  H
Sbjct: 521 DHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLH 573



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 182/360 (50%), Gaps = 10/360 (2%)

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           I +  +  +TF  NT++S Y  +  + +A  +F ++P  +T ++NA++S YA++G  + A
Sbjct: 43  ILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEA 102

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEG--AIKLFIQMQVEGEKPDRHTFSSILSMSS 341
              F+ +P  +  S+N+++A    +       A++    M  +    + ++F+S LS  +
Sbjct: 103 RALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACA 162

Query: 342 GIVDLHLGMQIHQMVTKTV-IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
              D   G Q+H +V ++    DV I +AL+ MYA+C    +AR +F+ M   +NVVSWN
Sbjct: 163 AEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMP-ERNVVSWN 221

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           ++I     +G   EAL LF  M +    P  +T  SV+SACA      EGRQ    MV  
Sbjct: 222 SLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKC 281

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
             +   +    +LVD+  + GR  +A  +   MP     +    L G  +   NVE AQV
Sbjct: 282 DRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKS-ANVEDAQV 340

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD-FSPCG 579
               +++   +N   + +L   YA  G  ++A  + + +K ++I  PT Y++ +  + CG
Sbjct: 341 VFSQMVE---KNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSI-WPTHYTYGNVLNACG 396



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 192/449 (42%), Gaps = 77/449 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY-------------ISSRGSGFLEE 47
           ++  Y K      AR++FD MP+R+VVSWN +I+ Y             +    +GF  +
Sbjct: 192 LVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPD 251

Query: 48  ARYLFDIMP------------------------ERDCVTWNTVISGYAKTGEMEEALRLF 83
              L  +M                           D V  N ++  YAK G   EA  +F
Sbjct: 252 EVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIF 311

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
           +SMP+R++VS  ++++G+ ++ +V +A   F +M  ++  + + L++   QNGE +EA R
Sbjct: 312 DSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIR 371

Query: 144 VLVKCG------SRCDGGEDLVRAYNTLIVGYGQRGRVEEARK--LFDKIPVNCDRGEGN 195
           + V+        +    G  L    N   +  GQ+  V   ++   FD  P         
Sbjct: 372 LFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGP--------- 422

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
              + ++   NS++  Y K G +    ++FE+M  RD  SWN MI GY      ++A +L
Sbjct: 423 ---ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHL 479

Query: 256 FVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-----WNSMIAGCE 306
           F +M     +PD++T   ++S     G ++    +F  M + + ++     +  M+    
Sbjct: 480 FERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLG 539

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPI 366
                + A +L   M +E   PD   ++S+L    G   LH  +++ +     +    P 
Sbjct: 540 RAGHLKEAEELINDMPME---PDSVLWASLL----GACRLHKNVELGEWTAGRLFELDPQ 592

Query: 367 NNA----LITMYARCGAIVEARIIFEEMK 391
           N+     L  MYA  G   E   +   MK
Sbjct: 593 NSGPYVLLSNMYAEMGKWAEVFRVRRSMK 621


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 197/619 (31%), Positives = 332/619 (53%), Gaps = 73/619 (11%)

Query: 9   REMAKARKL----FDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           R   +A+KL       +   +   +N +I+ Y      G +  AR++FD MP+ +  +WN
Sbjct: 19  RNQTQAKKLHCLIIKSLTNPETFLYNNLINAY---SKLGNITYARHVFDKMPQPNSFSWN 75

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM-----PG 119
           T++S Y+K+G++     +F+ MP R+ VSWN++ISG++  G V  A++ ++ M       
Sbjct: 76  TMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLN 135

Query: 120 RDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            +  + S ++  +   G +D   ++   +VK G         V   ++L+  Y + G V 
Sbjct: 136 LNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGA-----YVFVGSSLVDMYAKMGLVS 190

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            A ++FD++             +RN+V +N+MI    ++G V  ++ +F  M ERD+ SW
Sbjct: 191 VASQVFDEVQ------------ERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISW 238

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHP----DTLTW------------------------- 267
            TMI+G I      EA +LF  M       D  T+                         
Sbjct: 239 TTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIR 298

Query: 268 ----------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                     +A+V  Y +  ++  A   FKRM  KN+VSW +M+ G   N   E A+++
Sbjct: 299 SGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRV 358

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYAR 376
           F  MQ  G +PD  T  S++S  + +  L  G Q H Q +   +I  + ++NALIT+Y +
Sbjct: 359 FCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGK 418

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG+I ++  +F+EM   ++ VSW A++ G A  G A E ++LF+ M    + P  +TFI+
Sbjct: 419 CGSIEDSNQLFDEMSF-RDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIA 477

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           VLSAC+ AGLVE G+Q+F+SM+ ++GI P  +H+  ++D+ GR GRLE+A + I  MPF 
Sbjct: 478 VLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFS 537

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
           PD   W  LL +CR++ N E+ + AAE+L++++P+N   Y+LL ++YA  G+W +  ++R
Sbjct: 538 PDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLR 597

Query: 557 LLMKSNNIKKPTGYSWVDF 575
             M+    +K  G+SW+ +
Sbjct: 598 RGMREKGARKEPGFSWIKY 616


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 202/601 (33%), Positives = 319/601 (53%), Gaps = 77/601 (12%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N ++S Y      G L +AR +FD MP R+  ++N ++S  A+ G  ++AL LF ++P  
Sbjct: 54  NTLLSAYARL---GSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDP 110

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRD--------SASLSALVSGLIQNGELDEA 141
           +  S+NA+++   Q+G   +A+ F   M   D        +++LSA  S   +     E 
Sbjct: 111 DQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASE--KASRTGEQ 168

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
              LV   ++   G D V     L+  Y +  R EEA+K+FD +P            +RN
Sbjct: 169 VHALV---TKSSHGSD-VYIGTALVDMYAKCERPEEAQKVFDAMP------------ERN 212

Query: 202 IVSWNSMIMCYAKAGDVVSA-----------------------------------REIFE 226
           IVSWNS+I CY + G V  A                                   R++  
Sbjct: 213 IVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHT 272

Query: 227 QMLERDTFSW-----NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           +M++ D F       N ++  Y       EA  +F +M     ++  +M++GYA+  N+ 
Sbjct: 273 RMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVG 332

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A   F +M +KN+V+WN +IA    N + E A++LF++++ E   P  +T+ ++L+  +
Sbjct: 333 DAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACA 392

Query: 342 GIVDLHLGMQIHQMVTKTVI-------PDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
            + +L LG Q H  V K           DV + N+L+ MY + G+I +   +FE M    
Sbjct: 393 NLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARD 452

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           NV SWNAMI G A +G A +AL LF+ M      P  +T I VLSAC H+GLV+EGR++F
Sbjct: 453 NV-SWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYF 511

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           +SM  ++GI P  +H+  ++D++GR G L++  +LI+ MP EPD  +W +LLGACR+H N
Sbjct: 512 QSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKN 571

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +++ + AA  L +++P+NS PYVLL NMYA++G+W D   VR  MK   + K  G SW++
Sbjct: 572 IDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIE 631

Query: 575 F 575
            
Sbjct: 632 I 632



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 133/532 (25%), Positives = 218/532 (40%), Gaps = 141/532 (26%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++S Y +   +  AR++FD MP R+  S+N ++S        G  ++A  LF  +P+ D 
Sbjct: 56  LLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACAR---LGRADDALALFGAIPDPDQ 112

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVV-----------------------SWNAM 97
            ++N V++  A+ G   +ALR   +M A + V                         +A+
Sbjct: 113 CSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHAL 172

Query: 98  ISGFLQNGDV----------------ANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           ++      DV                  A + FD MP R+  S ++L++   QNG +DEA
Sbjct: 173 VTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEA 232

Query: 142 -------------------ARVLVKCGSRCDG----------------GEDLVRAYNTLI 166
                              A V+  C     G                 ED+V   N L+
Sbjct: 233 LALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMV-LNNALV 291

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
             Y + GR  EA+ +FD++ +            R++VS  SMI  YAK+ +V  A+ +F 
Sbjct: 292 DMYAKCGRTWEAKCVFDRMAI------------RSVVSETSMITGYAKSANVGDAQAVFL 339

Query: 227 QMLERDTFSWNTMISGYIHVLDMEEASNLFVKM--------------------------- 259
           QM+E++  +WN +I+ Y H  + EEA  LFV++                           
Sbjct: 340 QMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQL 399

Query: 260 ------------------PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
                             P  D    N++V  Y + G++      F+RM  ++ VSWN+M
Sbjct: 400 GQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAM 459

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKT 359
           I G   N   + A+ LF +M    E+PD  T   +LS    SG+V    G +  Q +T+ 
Sbjct: 460 IVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVK--EGRRYFQSMTED 517

Query: 360 --VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
             +IP       +I +  R G + E   + E M +  + V W +++G C  H
Sbjct: 518 HGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLH 569



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 166/342 (48%), Gaps = 7/342 (2%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           +TF  NT++S Y  +  + +A  +F  MPH +T ++NA++S  A++G  + AL  F  +P
Sbjct: 49  ETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIP 108

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
             +  S+N+++A    +     A++    M  +    + ++F+S LS  +       G Q
Sbjct: 109 DPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQ 168

Query: 352 IHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +H +VTK+    DV I  AL+ MYA+C    EA+ +F+ M   +N+VSWN++I     +G
Sbjct: 169 VHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMP-ERNIVSWNSLITCYEQNG 227

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
              EAL LF  M     +P  +T  SV+SACA      EGRQ    MV        +   
Sbjct: 228 PVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLN 287

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
            +LVD+  + GR  +A  +   M      +    + G  +  N   +    A  L  VE 
Sbjct: 288 NALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSAN---VGDAQAVFLQMVE- 343

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
           +N   + +L   YA     ++A  + + +K  ++  PT Y++
Sbjct: 344 KNVVAWNVLIATYAHNSEEEEALRLFVRLKRESV-WPTHYTY 384


>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 202/576 (35%), Positives = 318/576 (55%), Gaps = 68/576 (11%)

Query: 13  KARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAK 72
           +AR++F+EM QRDVVSWN MI+GY     +G ++EAR LFD    ++  TW  +++GYAK
Sbjct: 57  EARRVFNEMIQRDVVSWNSMINGY---SQNGKVDEARLLFDAFVGKNIRTWTILLTGYAK 113

Query: 73  TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGL 132
            G +EEA  +F SM  RNVVSWNAMISG++QNGD+ NA + FD MP ++ AS +++V+G 
Sbjct: 114 EGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGY 173

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
                + EA  +  +   R         ++  +I GY       EA  +F K+   C   
Sbjct: 174 CHCYRMSEARELFDQMPERNS------VSWMVMISGYVHISDYWEAWDVFVKM---CR-- 222

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-DTFSWNTMISGYIHVLDMEE 251
                  RN  SW +MI  +A+ G +  A +++E++ E+ ++ SW  MI+G++   +  E
Sbjct: 223 ------TRNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQNEESRE 276

Query: 252 ASNLFVKM------PHPDTLT---------------------------------WNAMVS 272
           A  L +++      P   + T                                  N ++S
Sbjct: 277 ALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLIS 336

Query: 273 GYAQIGNLELALDFFK--RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
            YA+ GN+E     F+  RMP++++VSW ++I+        E A+ LF+ M   G KP++
Sbjct: 337 MYAKCGNVEDGSHVFRTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQ 396

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEE 389
            T +S+LS    +  + LG Q H ++ K      + + N+LITMY +CG   +   +FEE
Sbjct: 397 LTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEE 455

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           M    ++++WNA++ GCA +G   EA+++F+ M    +LP  ++F+ VL AC+HAGLV+E
Sbjct: 456 MP-EHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDE 514

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           G  HF SM  +YGI P + H+  +VD++GR G L +A  LI+ MP +PD  +W ALLGAC
Sbjct: 515 GWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGAC 574

Query: 510 RVHNNVEL---AQVAAEALMKVEPENSTPYVLLYNM 542
           R+H N EL   ++  A     +   N +P  ++ N+
Sbjct: 575 RIHRNNELLYHSEKLAVVFGILSTPNGSPIQIIKNL 610



 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 165/484 (34%), Positives = 263/484 (54%), Gaps = 28/484 (5%)

Query: 56  PERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
           P+      NT I    + G +EEA R+FN M  R+VVSWN+MI+G+ QNG V  A   FD
Sbjct: 35  PQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFD 94

Query: 116 RMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
              G++  + + L++G  + G ++EA  V      R       V ++N +I GY Q G +
Sbjct: 95  AFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTER------NVVSWNAMISGYVQNGDL 148

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
           + ARKLFD++P            ++N+ SWNS++  Y     +  ARE+F+QM ER++ S
Sbjct: 149 KNARKLFDEMP------------EKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVS 196

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMP-QK 293
           W  MISGY+H+ D  EA ++FVKM    +  +W  M++ +AQ G L+ A+  ++R+P Q 
Sbjct: 197 WMVMISGYVHISDYWEAWDVFVKMCRTRNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQT 256

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           N  SW +MIAG   N++   A++L I++   G  P   +F+S LS  + I D+ +G  IH
Sbjct: 257 NSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIH 316

Query: 354 QMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLK-NVVSWNAMIGGCASHGF 411
            +  KT    +  + N LI+MYA+CG + +   +F  +++ K +VVSW A+I      G 
Sbjct: 317 SLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRMPKRDVVSWTAIISAYVQAGH 376

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
              AL+LF  M +  + P  +T  S+LSAC + G ++ G Q F +++ + G +  +    
Sbjct: 377 GEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQ-FHALIFKLGFDTFLFVGN 435

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
           SL+ +  + G  ED   + + MP E D   W A+L  C  +    L + A +   ++E E
Sbjct: 436 SLITMYFKCG-YEDGFCVFEEMP-EHDLITWNAVLVGCAQNG---LGKEAIKIFEQMEVE 490

Query: 532 NSTP 535
              P
Sbjct: 491 GILP 494


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 202/650 (31%), Positives = 327/650 (50%), Gaps = 97/650 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY--ISSRG-----------SGFLEE 47
           M++GY   + M +AR LF+ MP+R+ VSW VMISGY  I   G            G   E
Sbjct: 163 MLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPE 222

Query: 48  ARYLFDIMP-----------------------ERDCVTWNTVISGYAKTGEM-EEALRLF 83
              L  ++                        ERD V    +++GY K   M + A++ F
Sbjct: 223 QPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFF 282

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
             M ARN  +W+ +I+   Q G + +A   + R P +   S +++++GL + G +D+A  
Sbjct: 283 EGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKI 342

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
           +  +        E  V ++N +I GY Q   V+EA  LF+++P             RN +
Sbjct: 343 LFDQIH------EPNVVSWNAMITGYMQNEMVDEAEDLFNRMPF------------RNTI 384

Query: 204 SWNSMIMCYAKAGDV-------------------------------VSAREIFEQM---- 228
           SW  MI  YA+ G                                 + A E  +Q+    
Sbjct: 385 SWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLA 444

Query: 229 ----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
                + +++  N +I+ Y     +     +F +M   DT+++N+ +S   Q    + A 
Sbjct: 445 VKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEAR 504

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
           D F  MP  ++VSW ++I+ C        A+++F  M  E E P+    + +L +S  + 
Sbjct: 505 DVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLG 564

Query: 345 DLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
              LG QIH +  K  +   + + NAL++MY +C +  ++  +F+ M+  +++ +WN +I
Sbjct: 565 APQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSS-ADSLKVFDSMEE-RDIFTWNTII 622

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
            G A HG   EA+ +++ M S  VLP  +TF+ +L AC+H+GLV+EG Q FKSM ++YG+
Sbjct: 623 TGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGL 682

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE 523
            P +EH+A +VD++GR G ++ A   I  MP EPD  +W ALLGAC++H NVE+ + AAE
Sbjct: 683 TPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAE 742

Query: 524 ALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            L  +EP N+  YV+L N+Y+  G WD+  +VR LMK   + K  G SW+
Sbjct: 743 KLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWM 792



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 140/504 (27%), Positives = 246/504 (48%), Gaps = 62/504 (12%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGY 70
           + +AR++FD MP RD+++WN MI  Y ++   G  +  R L D +   +  T   ++SGY
Sbjct: 49  LHEAREVFDSMPFRDIIAWNSMIFAYCNN---GMPDAGRSLADAISGGNLRTGTILLSGY 105

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
           A+ G + +A R+F+ M  RN V+WNAM++ ++QNGD+  A + FD MP RD +S + +++
Sbjct: 106 ARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLT 165

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ----------RGRVEEARK 180
           G   +  ++EA  +  +   R      ++ +   LI  +G+           G   E   
Sbjct: 166 GYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPN 225

Query: 181 LFDKIPVNCDRGEGNVR-----------FKRNIVSWNSMIMCYAKAGDVV-SAREIFEQM 228
           L   +      G+  +            F+R++V   +++  Y K  +++ SA + FE M
Sbjct: 226 LVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGM 285

Query: 229 LERDTFSWNT-------------------------------MISGYIHVLDMEEASNLFV 257
             R+ ++W+T                               M++G      +++A  LF 
Sbjct: 286 AARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKILFD 345

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           ++  P+ ++WNAM++GY Q   ++ A D F RMP +N +SW  MIAG   N   E A+  
Sbjct: 346 QIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVS 405

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYAR 376
              +  +G  P   + +S     S I  L  G Q+H +  K     +  + NALIT+Y +
Sbjct: 406 LQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGK 465

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
             +I   R IF+ M  +K+ VS+N+ +     +    EA ++F +M S    P  +++ +
Sbjct: 466 YRSIGSVRQIFDRMT-VKDTVSYNSFMSALVQNNLFDEARDVFNNMPS----PDVVSWTT 520

Query: 437 VLSACAHAGLVEEGRQHFKSMVNE 460
           ++SACA A    E  + F+SM++E
Sbjct: 521 IISACAQADQGNEAVEIFRSMLHE 544



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 173/358 (48%), Gaps = 66/358 (18%)

Query: 105 GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT 164
           G +  A E FD MP RD  + ++++     NG + +A R L    S   GG   +R    
Sbjct: 47  GRLHEAREVFDSMPFRDIIAWNSMIFAYCNNG-MPDAGRSLADAIS---GGN--LRTGTI 100

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           L+ GY + GRV +AR++FD + V            RN V+WN+M+ CY + GD+  AR++
Sbjct: 101 LLSGYARAGRVRDARRVFDGMGV------------RNTVAWNAMVTCYVQNGDITLARKL 148

Query: 225 FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
           F+ M  RD  SWNTM++GY H   MEEA NLF +MP  + ++W  M+SGY  I     A 
Sbjct: 149 FDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAW 208

Query: 285 DFFKRM-------PQKNLVSWNSMI------------------AGCETN----------- 308
           D F+ M        Q NLVS  S +                   G E +           
Sbjct: 209 DMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGY 268

Query: 309 -KD---YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV 364
            KD    + A+K F  M    E    +T+S+I++  S    +     ++Q   +  +  V
Sbjct: 269 TKDVNMLDSAVKFFEGMAARNE----YTWSTIIAALSQAGRIDDAFAVYQ---RDPLKSV 321

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           P   +++T  AR G I +A+I+F+++    NVVSWNAMI G   +    EA +LF  M
Sbjct: 322 PSRTSMLTGLARYGRIDDAKILFDQIH-EPNVVSWNAMITGYMQNEMVDEAEDLFNRM 378



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 136/553 (24%), Positives = 235/553 (42%), Gaps = 100/553 (18%)

Query: 67  ISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS 126
           I    + G + EA  +F+SMP R++++WN+MI  +  NG         D + G +  + +
Sbjct: 40  IRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGT 99

Query: 127 ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
            L+SG  + G + +A RV    G R         A+N ++  Y Q G +  ARKLFD +P
Sbjct: 100 ILLSGYARAGRVRDARRVFDGMGVRN------TVAWNAMVTCYVQNGDITLARKLFDAMP 153

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246
                        R++ SWN+M+  Y  +  +  AR +FE+M ER+  SW  MISGY+ +
Sbjct: 154 ------------SRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLI 201

Query: 247 LDMEEASNLFVKM-------PHP--------------------------------DTLTW 267
                A ++F  M         P                                D +  
Sbjct: 202 EQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVG 261

Query: 268 NAMVSGYAQ-IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
            A+++GY + +  L+ A+ FF+ M  +N  +W+++IA        + A  ++ Q      
Sbjct: 262 TAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVY-QRDPLKS 320

Query: 327 KPDRHTFSSILSMSSGIVDLHLGM-QIHQMVTKTVIPDVPINNALITMYARCGAIVEARI 385
            P R +  + L+    I D  +   QIH+       P+V   NA+IT Y +   + EA  
Sbjct: 321 VPSRTSMLTGLARYGRIDDAKILFDQIHE-------PNVVSWNAMITGYMQNEMVDEAED 373

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F  M   +N +SW  MI G A +G + +AL   +++    +LP+  +  S   AC++  
Sbjct: 374 LFNRMP-FRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIE 432

Query: 446 LVEEGRQ----------HFKS-----MVNEYG----------IEPRIE-----HFASLVD 475
            +E G+Q           F S     ++  YG          I  R+       + S + 
Sbjct: 433 ALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMS 492

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC-RVHNNVELAQVAAEALMKVEPENST 534
            + ++   ++A D+   MP  PD   W  ++ AC +     E  ++    L + E  N  
Sbjct: 493 ALVQNNLFDEARDVFNNMP-SPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPP 551

Query: 535 PYVLLYNMYADVG 547
              +L  +  ++G
Sbjct: 552 ILTILLGLSGNLG 564


>gi|357139571|ref|XP_003571354.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 207/628 (32%), Positives = 342/628 (54%), Gaps = 59/628 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y +R  +  A++LFD MP+RDV+SW  +++ Y  +   G    AR +FD MP R+ 
Sbjct: 48  LLTSYGRRGMLRDAQQLFDRMPRRDVISWTALLTAYADN---GDPASARLVFDDMPRRNA 104

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN ++S Y + G+   A  LF+ MPARN VS+ AMISG  + G +  A   F  MP R
Sbjct: 105 ASWNALLSLYLRAGQPAAAHALFSKMPARNAVSYGAMISGLARAGMLREAEAVFAEMPWR 164

Query: 121 --DSASLSALVSGLIQNGELDEAARVLVKCGSR------------CDGGEDL-------- 158
             D    +AL++  ++ GEL  A RV      R            C  G  L        
Sbjct: 165 WRDPVGSNALIAAYVRAGELSLALRVFEGMAVRDVISWTAVVDGLCKNGSVLEARKVFEA 224

Query: 159 -----VRAYNTLIVGYGQRGRVEEARKLF-----DKIPVN----------CDRG----EG 194
                V ++ ++I+GY + GR  +   LF     + + VN          C       EG
Sbjct: 225 MPERNVVSWTSMILGYVKLGRRRDGLLLFQNMRREGVQVNTTTLSVALDACAESSLVREG 284

Query: 195 --------NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246
                    + F+ ++   +S+I  Y++ G +V AR +F  M  +D  SWN++I+GY+  
Sbjct: 285 IQIHGLIIAMGFEMDVFLGDSLITLYSRFGWMVDARRVFAYMTWKDVVSWNSLITGYVQH 344

Query: 247 LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
             +EEA  LF  MP  D ++W +MV G+A  G +  A++ F++MP K+ V+W ++I+   
Sbjct: 345 NMVEEAHVLFKLMPEKDAVSWTSMVVGFANRGWITEAIELFEQMPGKDEVAWTAVISSLV 404

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVP 365
           TN DY  A++ F +M  EG KP+   FS +LS  + +  L+ GMQ H   +    I D  
Sbjct: 405 TNGDYLSAVRWFCRMAQEGCKPNTIAFSCLLSALASLTMLNQGMQAHAYAINMGWIFDSS 464

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           I+ +L++MYA+CG + EA  +F  +    ++++ N+MI     H    +A +LF  M++ 
Sbjct: 465 IHTSLVSMYAKCGRLAEAYHVFSSISN-PSLIATNSMITAFVQHDLVEDAFKLFTKMQND 523

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
              P ++TF+ +L+ CA AGLV++G  +F SM + YGIEP  +H+  +VD++GR G L +
Sbjct: 524 GHKPNHVTFLGILTGCARAGLVQQGYNYFGSMKSVYGIEPNPDHYTCMVDLLGRAGLLAE 583

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A+++I  MP   +   W ALL A  +H+++  A++AA+ L++++P ++T Y +L NM++ 
Sbjct: 584 ALEMINSMPQNDNSDAWAALLSASSLHSSLTFAKIAAQKLLEMDPYDATAYTVLSNMFSS 643

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            G  +D   ++++  SN   K  GYS +
Sbjct: 644 AGMKNDEEMLKVVQLSNMASKSPGYSLI 671



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 141/527 (26%), Positives = 227/527 (43%), Gaps = 97/527 (18%)

Query: 30  NVMISGYISSRGS-GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPA 88
           N  ++  ++S G  G L +A+ LFD MP RD ++W  +++ YA  G+   A  +F+ MP 
Sbjct: 42  NAHLNALLTSYGRRGMLRDAQQLFDRMPRRDVISWTALLTAYADNGDPASARLVFDDMPR 101

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC 148
           RN  SWNA++S +L+ G  A A   F +MP R++ S  A++SGL + G L EA  V  + 
Sbjct: 102 RNAASWNALLSLYLRAGQPAAAHALFSKMPARNAVSYGAMISGLARAGMLREAEAVFAEM 161

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
             R     D V + N LI  Y + G +  A ++F+ + V            R+++SW ++
Sbjct: 162 PWRW---RDPVGS-NALIAAYVRAGELSLALRVFEGMAV------------RDVISWTAV 205

Query: 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP------ 262
           +    K G V+ AR++FE M ER+  SW +MI GY+ +    +   LF  M         
Sbjct: 206 VDGLCKNGSVLEARKVFEAMPERNVVSWTSMILGYVKLGRRRDGLLLFQNMRREGVQVNT 265

Query: 263 ---------------------------------DTLTWNAMVSGYAQIGNLELALDFFKR 289
                                            D    +++++ Y++ G +  A   F  
Sbjct: 266 TTLSVALDACAESSLVREGIQIHGLIIAMGFEMDVFLGDSLITLYSRFGWMVDARRVFAY 325

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
           M  K++VSWNS+I G   +   E A  LF  M      P++   S               
Sbjct: 326 MTWKDVVSWNSLITGYVQHNMVEEAHVLFKLM------PEKDAVSW-------------- 365

Query: 350 MQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
                              +++  +A  G I EA  +FE+M   K+ V+W A+I    ++
Sbjct: 366 ------------------TSMVVGFANRGWITEAIELFEQMP-GKDEVAWTAVISSLVTN 406

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G    A+  F  M      P  I F  +LSA A   ++ +G Q     +N   I     H
Sbjct: 407 GDYLSAVRWFCRMAQEGCKPNTIAFSCLLSALASLTMLNQGMQAHAYAINMGWIFDSSIH 466

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE 516
             SLV +  + GRL +A  +   +   P      +++ A   H+ VE
Sbjct: 467 -TSLVSMYAKCGRLAEAYHVFSSIS-NPSLIATNSMITAFVQHDLVE 511



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 131/327 (40%), Gaps = 64/327 (19%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           P+    NA+++ Y + G L  A   F RMP+++++SW +++     N D   A  +F  M
Sbjct: 40  PNNAHLNALLTSYGRRGMLRDAQQLFDRMPRRDVISWTALLTAYADNGDPASARLVFDDM 99

Query: 322 QVE---------------GEKPDRHTFSSIL----SMSSGIVDLHLGMQIHQMVTKTVIP 362
                             G+    H   S +    ++S G +   L         + V  
Sbjct: 100 PRRNAASWNALLSLYLRAGQPAAAHALFSKMPARNAVSYGAMISGLARAGMLREAEAVFA 159

Query: 363 DVPI-------NNALITMYARC-------------------------------GAIVEAR 384
           ++P        +NALI  Y R                                G+++EAR
Sbjct: 160 EMPWRWRDPVGSNALIAAYVRAGELSLALRVFEGMAVRDVISWTAVVDGLCKNGSVLEAR 219

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +FE M   +NVVSW +MI G    G   + L LF++MR   V     T    L ACA +
Sbjct: 220 KVFEAMP-ERNVVSWTSMILGYVKLGRRRDGLLLFQNMRREGVQVNTTTLSVALDACAES 278

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
            LV EG Q    ++   G E  +    SL+ +  R G + DA  +   M ++ D   W +
Sbjct: 279 SLVREGIQ-IHGLIIAMGFEMDVFLGDSLITLYSRFGWMVDARRVFAYMTWK-DVVSWNS 336

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPE 531
           L+     HN VE A V    L K+ PE
Sbjct: 337 LITGYVQHNMVEEAHV----LFKLMPE 359


>gi|18481717|gb|AAL73539.1|AF466200_18 hypothetical protein S250_18C08.29 [Sorghum bicolor]
          Length = 679

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 203/634 (32%), Positives = 343/634 (54%), Gaps = 71/634 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y +R  +  A++LFD MP RDV+SW  +++ Y      G L  AR++FD MP R+ 
Sbjct: 47  LLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADV---GNLASARFVFDDMPLRNA 103

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW-------------------------- 94
            +WN ++S Y + G    A  LF   PA+N VS+                          
Sbjct: 104 ASWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPPR 163

Query: 95  -------NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
                  NAMI G+L+ G++  A+  FD M  RD  S SA+V GL + G + EA R+   
Sbjct: 164 WRDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFEA 223

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF-----DKIPVN----------CDRG 192
              R       V ++ ++I GY + G   +   LF     + + VN          C + 
Sbjct: 224 MPERN------VVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQA 277

Query: 193 ----EGN--------VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
               EG+        + F  +I   +S+I+ Y++ G +  AR +F  M ++D  SWN++I
Sbjct: 278 SLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSWNSLI 337

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    +E+A  LF  MP  D ++W +MV G+A  G +  +++ F++MP K+ ++W +
Sbjct: 338 TGYVQNDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQMPVKDEIAWAA 397

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKT 359
           +++    N +Y  A++ F QM  EG +P+   FS +LS  + +  L+ G+Q H   V   
Sbjct: 398 VMSSLVANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLNQGLQAHAYAVNMG 457

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
            I D  ++ +L+TMYA+CG + EA  +F  +    ++++ N+MI   A HG A +A +LF
Sbjct: 458 WIFDSAVHASLVTMYAKCGRLAEAHRVFSCISH-PSLIATNSMITAFAQHGLAEDAFKLF 516

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M+     P ++TF+ +L+ACA AGLV+ G  +F+SM + YGI+P  +H+  +VD++GR
Sbjct: 517 NRMQYDGQRPNHVTFLGILTACARAGLVQHGYNYFESMRSVYGIQPNPDHYTCMVDLLGR 576

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G L +A+++   MP +     W ALL +  +H+N++LA++AA+ L++++P ++T Y +L
Sbjct: 577 AGFLNEALEMTNSMPQKDYPDAWKALLSSSSLHSNLDLAKLAAQRLLEIDPYDATAYTVL 636

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            NM++  G  +D   V++   SN   K  GYS +
Sbjct: 637 SNMFSSAGMKEDEEMVKVAQLSNMASKSPGYSLI 670



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 213/458 (46%), Gaps = 56/458 (12%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +++ Y + G +++A +LF+ MP R+V+SW A+++ +   G++A+A   FD MP R++A
Sbjct: 45  NALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMPLRNAA 104

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S +ALVS  ++ G    AA  L      C        +Y  +I G  + G + EA+ ++ 
Sbjct: 105 SWNALVSLYLRAGR-PAAAHALF-----CKAPAKNAVSYGAIITGLARAGMLREAQAVYW 158

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           ++P             R+ V  N+MI  Y + G++  A  +F+ M  RD  SW+ M+ G 
Sbjct: 159 EMPPRW----------RDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGL 208

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG----NLELALDFFKRMPQKNLVSWN 299
                + EA  LF  MP  + ++W +M+ GY + G     L L LD  +   Q N+++ +
Sbjct: 209 CKYGTVSEARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLS 268

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
            ++ GC      +   ++   M   G   D     S++ M S    +     +   + + 
Sbjct: 269 VVLDGCAQASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQK 328

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              D+   N+LIT Y +   I +A ++F+ M   K+ +SW +M+ G A+ G+  E++ELF
Sbjct: 329 ---DIVSWNSLITGYVQNDMIEDAHVLFKLMP-EKDAISWTSMVVGFANRGWMRESVELF 384

Query: 420 KSM-------------------------RSFKVL------PTYITFISVLSACAHAGLVE 448
           + M                         R F  +      P  + F  +LSA A   ++ 
Sbjct: 385 EQMPVKDEIAWAAVMSSLVANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLN 444

Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           +G Q     VN   I     H ASLV +  + GRL +A
Sbjct: 445 QGLQAHAYAVNMGWIFDSAVH-ASLVTMYAKCGRLAEA 481



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 156/348 (44%), Gaps = 12/348 (3%)

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           +IP         VR   N    N+++  Y + G +  A+++F++M  RD  SW  +++ Y
Sbjct: 23  RIPCQQHLLPPPVRALPNRAHLNALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAY 82

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
             V ++  A  +F  MP  +  +WNA+VS Y + G    A   F + P KN VS+ ++I 
Sbjct: 83  ADVGNLASARFVFDDMPLRNAASWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIIT 142

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363
           G         A  ++ +M      P          +  G     LGM + ++       D
Sbjct: 143 GLARAGMLREAQAVYWEMPPRWRDPVGSNAMIWGYLRGG----ELGMAL-RVFDGMAARD 197

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           V   +A++    + G + EAR +FE M   +NVVSW +MI G   HG   + L LF  MR
Sbjct: 198 VISWSAMVDGLCKYGTVSEARRLFEAMP-ERNVVSWTSMIRGYVKHGMYRDGLLLFLDMR 256

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
              V    IT   VL  CA A LV+EG Q    M+   G    I    SL+ +  R G +
Sbjct: 257 REGVQVNMITLSVVLDGCAQASLVDEGSQVHCLMI-RMGFAEDIFLGDSLIIMYSRFGSM 315

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            DA  L   M  + D   W +L+     ++ +E A V    L K+ PE
Sbjct: 316 ADARSLFSFMN-QKDIVSWNSLITGYVQNDMIEDAHV----LFKLMPE 358


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 195/590 (33%), Positives = 333/590 (56%), Gaps = 33/590 (5%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +IS Y K   +  A K+FD+MP  ++ SWN ++S Y      G + E  YLFD MP RD 
Sbjct: 50  LISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAY---SKLGRVSEMEYLFDAMPRRDG 106

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWN---AMISGFLQNGDVANAIEFFDRM 117
           V+WN++ISGYA  G + ++++ +N M  +N  S+N      S  L        ++   ++
Sbjct: 107 VSWNSLISGYAGCGLIYQSVKAYNLM-LKNDGSFNLNRITFSTLLILASKRGCVKLGRQI 165

Query: 118 PGRDSASLSALVSGLIQNGELDEAARV-LVKCGSRC--DGGEDLVRAYNTLIVGYGQRGR 174
            G        +    + +  +D  +++ ++ C  +   +  E  V  YNTLI+G  + GR
Sbjct: 166 HGH-VVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGR 224

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LE 230
           VE++++LF ++             +R+ +SW SMI  + + G    A +IF +M    L+
Sbjct: 225 VEDSKRLFFEMR------------ERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQ 272

Query: 231 RDTFSWNTMISGYIHVLDMEEASNL---FVKMPHPDTL-TWNAMVSGYAQIGNLELALDF 286
            D +++ ++++    V+ ++E   +    ++  + D +   +A+V  Y +  N++ A   
Sbjct: 273 MDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAV 332

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           FK+M  KN+VSW +M+ G   N   E A+K F  MQ  G +PD  T  S++S  + +  L
Sbjct: 333 FKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASL 392

Query: 347 HLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             G Q H + +T  +I  + ++NAL+T+Y +CG+I ++  +F E+   K+ V+W A++ G
Sbjct: 393 EEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEIS-FKDEVTWTALVSG 451

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
            A  G A E + LF+SM +  + P  +TFI VLSAC+ AGLVE+G Q F+SM+NE+GI P
Sbjct: 452 YAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVP 511

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
             +H+  ++D+  R GR+E+A + I  MPF PD   W  LL +CR + N+++ + AAE L
Sbjct: 512 IQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFL 571

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           M+++P N+  YVLL ++YA  G+W++   +R  M+   ++K  G SW+ +
Sbjct: 572 MELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKY 621



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 235/459 (51%), Gaps = 45/459 (9%)

Query: 50  YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVAN 109
           ++   +P  +    N +IS YAK G +  A ++F+ MP  N+ SWN ++S + + G V+ 
Sbjct: 34  HIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSE 93

Query: 110 AIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR-AYNTLIVG 168
               FD MP RD  S ++L+SG    G + ++ +       + DG  +L R  ++TL++ 
Sbjct: 94  MEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAY-NLMLKNDGSFNLNRITFSTLLIL 152

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
             +RG V+  R++   +            F   +   + ++  Y+K G +  AR++F+++
Sbjct: 153 ASKRGCVKLGRQIHGHVV--------KFGFMSYVFVGSPLVDMYSKMGMISCARKVFDEL 204

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
            E++   +NT+I G +    +E++  LF +M   D+++W +M++G+ Q G    A+D F+
Sbjct: 205 PEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFR 264

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            M  +NL                        QM       D++TF S+L+   G++ L  
Sbjct: 265 EMKLENL------------------------QM-------DQYTFGSVLTACGGVMALQE 293

Query: 349 GMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G Q+H  + +T   D + + +AL+ MY +C  I  A  +F++M   KNVVSW AM+ G  
Sbjct: 294 GKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMT-CKNVVSWTAMLVGYG 352

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
            +G++ EA++ F  M+ + + P   T  SV+S+CA+   +EEG Q F +     G+   I
Sbjct: 353 QNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQ-FHARALTSGLISFI 411

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
               +LV + G+ G +ED+  L   + F+ D+  W AL+
Sbjct: 412 TVSNALVTLYGKCGSIEDSHRLFNEISFK-DEVTWTALV 449



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 144/320 (45%), Gaps = 70/320 (21%)

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL----------------- 295
           S++   +P+P+T   N ++S YA++G++  A   F +MP  NL                 
Sbjct: 33  SHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVS 92

Query: 296 --------------VSWNSMIAGCETNKDYEGAIKLF-IQMQVEGE-KPDRHTFSSILSM 339
                         VSWNS+I+G         ++K + + ++ +G    +R TFS++L +
Sbjct: 93  EMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLIL 152

Query: 340 SSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV- 397
           +S    + LG QIH  V K   +  V + + L+ MY++ G I  AR +F+E+   KNVV 
Sbjct: 153 ASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELP-EKNVVM 211

Query: 398 ------------------------------SWNAMIGGCASHGFATEALELFKSMRSFKV 427
                                         SW +MI G   +G   +A+++F+ M+   +
Sbjct: 212 YNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENL 271

Query: 428 LPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
                TF SVL+AC     ++EG+Q H   +  +Y  +  I   ++LVD+  +   ++ A
Sbjct: 272 QMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDY--KDNIFVASALVDMYCKCKNIKSA 329

Query: 487 MDLIKGMPFEPDKAVWGALL 506
             + K M  + +   W A+L
Sbjct: 330 EAVFKKMTCK-NVVSWTAML 348


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 198/588 (33%), Positives = 322/588 (54%), Gaps = 33/588 (5%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD-IMPERD 59
           +I  YV    +  AR LFD MP  D  +WN+MI+ Y        L++AR LF  ++  RD
Sbjct: 79  IIQAYVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARI---NRLDDARELFHGMISGRD 135

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            V+W  +++GYA+   +EEA  LF  MP  + V+  +++ G+  NG +A A E FDR+ G
Sbjct: 136 VVSWAILVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGG 195

Query: 120 ---RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
              RD+ + +A+++   +N  +D A  +  +   R         +++ L++ Y Q G ++
Sbjct: 196 AGDRDATACNAMIAAYGKNARVDLAEGLFAQIKLRNAA------SWSLLLLTYAQNGHLD 249

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            A+K FD++P            +R+ +++ +M    +  G++  ARE+   +   D  +W
Sbjct: 250 LAKKSFDRMP------------QRDSIAFTAMTAVLSDQGELRGAREMLRYLSAVDVIAW 297

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           N ++ GY    D++E   LF  M H     T+    +V+ Y + G ++ A      MP +
Sbjct: 298 NALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRVDDARRVLDAMPVR 357

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
             VSW +MIA    N +   AI LF  M +EG +P   T  S++   + +  L LG +IH
Sbjct: 358 TSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIH 417

Query: 354 QMVTKTVI--PDVPINNALITMYARCGAIVEARIIFEEMKL-LKNVVSWNAMIGGCASHG 410
             +  + +    + + NA+ITMY +CG +  AR +FE + L  ++VV+W AMI   A +G
Sbjct: 418 ARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNG 477

Query: 411 FATEALELFKSMR-SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
              EA+ELF+ M       P  +TF+SVLSAC+H G +E+  +HF SM  ++G+ P  +H
Sbjct: 478 VGEEAIELFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAWEHFCSMGPDFGVPPAGDH 537

Query: 470 FASLVDIVGRHGRLEDAMDLI-KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528
           +  LVD++GR GRL +A  L+ +   FE D   W A L AC+++ ++E +Q AA+ + ++
Sbjct: 538 YCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSEL 597

Query: 529 EPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           EPEN    VLL N+YA  GR  D   +R  MKS+ +KK  G SW++ +
Sbjct: 598 EPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEIN 645



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/449 (25%), Positives = 221/449 (49%), Gaps = 26/449 (5%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +I  + K G+ + A  +FN +   N  SW+ +I  ++ +  + +A   FD MPG D+ 
Sbjct: 46  NLLIDLFGKCGDPDAARAVFNRVRLPNEYSWSCIIQAYVSSSRIHDARALFDSMPGFDAF 105

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           + + +++   +   LD+A  +     S    G D+V ++  L+ GY +  R+EEA  LF 
Sbjct: 106 TWNIMIAAYARINRLDDARELFHGMIS----GRDVV-SWAILVAGYARHDRLEEASALFR 160

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM---LERDTFSWNTMI 240
           ++P+             + V+  S++  YA  G +  A+E+F+++    +RD  + N MI
Sbjct: 161 RMPL------------WDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDRDATACNAMI 208

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           + Y     ++ A  LF ++   +  +W+ ++  YAQ G+L+LA   F RMPQ++ +++ +
Sbjct: 209 AAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTA 268

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           M A      +  GA ++   +       D   ++++L   S   DL    ++   +    
Sbjct: 269 MTAVLSDQGELRGAREMLRYLSA----VDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRT 324

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
           +    +   L+ +Y +CG + +AR + + M  ++  VSW AMI   A +G A EA+ LF+
Sbjct: 325 VATTVVAGTLVNLYGKCGRVDDARRVLDAMP-VRTSVSWTAMIAAYAQNGNAAEAINLFQ 383

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M      P+ IT ISV+ +CA  G +  G++    + +       +    +++ + G+ 
Sbjct: 384 CMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKC 443

Query: 481 GRLEDAMDLIKGMPFEPDKAV-WGALLGA 508
           G LE A ++ + +P      V W A++ A
Sbjct: 444 GNLELAREVFESVPLRTRSVVTWTAMIRA 472



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 174/396 (43%), Gaps = 50/396 (12%)

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
           L R +   I       ++ EA+ L D+I  +     G+ R   N+     +I  + K GD
Sbjct: 6   LARRFEERIRACAIGRKLHEAKILHDEIARS---PHGDNRRLTNL-----LIDLFGKCGD 57

Query: 218 VVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQI 277
             +AR +F ++   + +SW+ +I  Y+    + +A  LF  MP  D  TWN M++ YA+I
Sbjct: 58  PDAARAVFNRVRLPNEYSWSCIIQAYVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARI 117

Query: 278 GNLELALDFFKRM-PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
             L+ A + F  M   +++VSW  ++AG   +   E A  LF +M +     D  T +S+
Sbjct: 118 NRLDDARELFHGMISGRDVVSWAILVAGYARHDRLEEASALFRRMPLW----DTVTCTSV 173

Query: 337 LSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
           L   +    L    ++   +      D    NA+I  Y +   +  A  +F ++K L+N 
Sbjct: 174 LQGYAHNGHLAEAQELFDRIGGAGDRDATACNAMIAAYGKNARVDLAEGLFAQIK-LRNA 232

Query: 397 VSWNAMIGGCASHGFATEALELFKSM---------------------RSFKVLPTYITFI 435
            SW+ ++   A +G    A + F  M                     R  + +  Y++ +
Sbjct: 233 ASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGAREMLRYLSAV 292

Query: 436 SV------LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
            V      L   +  G ++E R+ F +M  E+          +LV++ G+ GR++DA  +
Sbjct: 293 DVIAWNALLEGYSRTGDLDEVRRLFSAM--EHRTVATTVVAGTLVNLYGKCGRVDDARRV 350

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
           +  MP     + W A++ A   + N      AAEA+
Sbjct: 351 LDAMPVRTSVS-WTAMIAAYAQNGN------AAEAI 379


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 212/649 (32%), Positives = 328/649 (50%), Gaps = 100/649 (15%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y+  R+ A+  ++  E    D+V  N MIS Y+     G L +AR LFD MPER+ V+W+
Sbjct: 66  YLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQW---GNLVQARLLFDEMPERNEVSWS 122

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---- 120
            +ISG  K G +EE++  F   P +NVVSW A ISGF++NG    A++ F R+       
Sbjct: 123 ALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRP 182

Query: 121 DSASLSALVSGLIQNGELDEAARVL---VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           +  + +++V    + G+      +L   VK G      E  +   N+LI    + G ++ 
Sbjct: 183 NDVTFTSVVRACGELGDFGLGMSILGLVVKAGF-----EHYLSVSNSLITLSLRMGEIDL 237

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           AR++FD++             KR++VSW +++  Y + GD+  AR IF++M ER+  SW+
Sbjct: 238 ARRVFDRME------------KRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWS 285

Query: 238 TMISGYIHVLDMEEASNLFVKMPH------------------------------------ 261
            MI+ Y      EEA  LF KM                                      
Sbjct: 286 AMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKI 345

Query: 262 ---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM----------------- 301
               D    ++++  Y + G  +     F  + +KN+V WNSM                 
Sbjct: 346 GIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELF 405

Query: 302 --------------IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
                         IAG   N+  E  +++F  + V G+ P++ TFSS+L   + I  L 
Sbjct: 406 ELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLD 465

Query: 348 LGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
            GM +H  + K  I  D+ +  AL  MYA+CG I  ++ +FE M   KN +SW  MI G 
Sbjct: 466 KGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMP-EKNEISWTVMIQGL 524

Query: 407 ASHGFATEALELFKSM-RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
           A  GFA E+L LF+ M R+ +V P  +  +SVL AC+H GLV++G  +F SM   YGI+P
Sbjct: 525 AESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKP 584

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
           + +H+  +VD++ R GRL +A + I+ +PF+P+   W ALL  C+ + + ++A+  A+ L
Sbjct: 585 KGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKL 644

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            ++   NS  YVLL N+YA  GRW D + +R LM+   +KK  G SWV+
Sbjct: 645 WQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVE 693



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 160/337 (47%), Gaps = 35/337 (10%)

Query: 208 MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW 267
           +++ Y          +I ++    D    N MIS Y+   ++ +A  LF +MP  + ++W
Sbjct: 62  LLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSW 121

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           +A++SG  + G +E ++ +F+R P +N+VSW + I+G   N     A+KLF ++   G +
Sbjct: 122 SALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVR 181

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITM------------- 373
           P+  TF+S++     + D  LGM I  +V K      + ++N+LIT+             
Sbjct: 182 PNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRV 241

Query: 374 ------------------YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
                             Y   G + EAR IF+EM   +N +SW+AMI   +  G+A EA
Sbjct: 242 FDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMP-ERNEISWSAMIARYSQSGYAEEA 300

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L+LF  M      P    F   LSA A    +  G  +    V + GI+  +   +SL+D
Sbjct: 301 LKLFSKMVQEGFKPNISCFACTLSALASLRALSAG-INIHGHVTKIGIDKDVFIGSSLID 359

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           +  + G+ +D   L+  +  E +   W +++G   ++
Sbjct: 360 LYCKCGKPDDG-RLVFDLILEKNVVCWNSMVGGYSIN 395


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 190/529 (35%), Positives = 297/529 (56%), Gaps = 26/529 (4%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D      ++  Y + G + +A R F+ M  R+V +WNAM+SG  +N   A A+  F RM 
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV 162

Query: 119 GRDSASLSALVSGLIQNGEL--DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               A  +  VS ++    L  D A  + +   +   G +D +   N +I  YG+ G +E
Sbjct: 163 MEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLE 222

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERD 232
           E RK+FD +              R++V+WNS+I  + + G V SA E+F  M    +  D
Sbjct: 223 EVRKVFDGMS------------SRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPD 270

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFF 287
             +  ++ S      D+    ++   M        D +  NA+V  YA++  +E A   F
Sbjct: 271 VLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMF 330

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV-EGEKPDRHTFSSILSMSSGIVDL 346
             MP ++ VSWN++I G   N     AI ++  MQ  EG KP + TF S+L   S +  L
Sbjct: 331 DSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGAL 390

Query: 347 HLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             G ++H +  KT +  DV +   +I +YA+CG + EA ++FE+    ++   WNA+I G
Sbjct: 391 QQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPR-RSTGPWNAVISG 449

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
              HG   +AL LF  M+   + P ++TF+S+L+AC+HAGLV++GR  F  M   YGI+P
Sbjct: 450 VGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKP 509

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
             +H+A +VD+ GR G+L+DA D I+ MP +PD A+WGALLGACR+H NVE+ +VA++ L
Sbjct: 510 IAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNL 569

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            +++P+N   YVL+ NMYA VG+WD  +EVR L++  N++K  G+S ++
Sbjct: 570 FELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIE 618



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 120/471 (25%), Positives = 216/471 (45%), Gaps = 84/471 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI-SSRGS------------GFLEE 47
           ++  Y++   +  A + FDEM  RDV +WN M+SG   ++R +            G   +
Sbjct: 110 LVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGD 169

Query: 48  ARYLFDIMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
           A  +  ++P                       + +    N +I  Y K G +EE  ++F+
Sbjct: 170 AVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFD 229

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            M +R++V+WN++ISG  Q G VA+A+E F  M  RDS     +++       L   A  
Sbjct: 230 GMSSRDLVTWNSIISGHEQGGQVASAVEMFCGM--RDSGVSPDVLT-------LLSLASA 280

Query: 145 LVKCGSRCDG----------GEDL--VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           + +CG  C G          G D+  + A N ++  Y +  ++E A+++FD +PV     
Sbjct: 281 IAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPV----- 335

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-----SWNTMISGYIHVL 247
                  R+ VSWN++I  Y + G    A  +++ M + +       ++ +++  Y H+ 
Sbjct: 336 -------RDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLG 388

Query: 248 DMEEASN---LFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
            +++ +    L +K   + D      ++  YA+ G L+ A+  F++ P+++   WN++I+
Sbjct: 389 ALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVIS 448

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKT-- 359
           G   +     A+ LF QMQ EG  PD  TF S+L+  S  G+VD   G     M+     
Sbjct: 449 GVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVD--QGRNFFNMMQTAYG 506

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           + P       ++ M+ R G + +A      M +  +   W A++G C  HG
Sbjct: 507 IKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHG 557



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 122/280 (43%), Gaps = 34/280 (12%)

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
           +L  D F+   ++  Y+    + +A   F +M H D   WNAM+SG              
Sbjct: 99  LLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGL------------- 145

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
                            C   +  E A+ LF +M +EG   D  T SS+L M   + D  
Sbjct: 146 -----------------CRNARAAE-AVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRA 187

Query: 348 LGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           L + +H    K  + D + + NA+I +Y + G + E R +F+ M   +++V+WN++I G 
Sbjct: 188 LALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMS-SRDLVTWNSIISGH 246

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
              G    A+E+F  MR   V P  +T +S+ SA A  G +  GR     MV        
Sbjct: 247 EQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGD 306

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           I    ++VD+  +  ++E A  +   MP   D   W  L+
Sbjct: 307 IIAGNAIVDMYAKLSKIEAAQRMFDSMPVR-DAVSWNTLI 345


>gi|125560040|gb|EAZ05488.1| hypothetical protein OsI_27705 [Oryza sativa Indica Group]
          Length = 1165

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 196/612 (32%), Positives = 331/612 (54%), Gaps = 71/612 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y +R  +  A+ LFD+MP RDV+SW  +++ Y      G L  AR +FD MP R+ 
Sbjct: 44  LLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADG---GDLASARLVFDDMPRRNA 100

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW-------------------------- 94
            +WN ++S Y +      A  LF  MPA+N VS+                          
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPWQ 160

Query: 95  -------NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
                  NA+++G+L+ G++A A+  F+ M  RD  S SA+V GL ++G + EA RV   
Sbjct: 161 WRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDA 220

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF-----DKIPVN----------CDRG 192
              R       V ++ ++I GY +RG   +   LF     + + VN          C   
Sbjct: 221 MPERN------VVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAA 274

Query: 193 ----EG--------NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
               EG        ++ F+ +I   +S+I+ Y++ G +V A+  F+ M ++D  SWN++I
Sbjct: 275 SLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQKDIVSWNSLI 334

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    +EEA  LF  M   D ++W +MV G+A  G +  +++ F++MP K+ V+W +
Sbjct: 335 TGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTA 394

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKT 359
           +I+   TN DY  A++ F +M  EG KP+   FS +LS  + +  L+ G Q H   +   
Sbjct: 395 IISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMG 454

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
            + D  ++ +L++MYA+CG + EA  +F  +    ++++ N+MI     HGF  +AL+LF
Sbjct: 455 WVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISN-PSLIAINSMITAFVQHGFVEDALKLF 513

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M++    P ++TF+ +L+ CA AG V++G  +F+SM   YG+EP  EH+  +VD++GR
Sbjct: 514 TKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGR 573

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G L +A+++I  MP       W ALL A  +H+N+  A++AA+ L++ +P ++T Y +L
Sbjct: 574 AGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYDATAYTVL 633

Query: 540 YNMYADVGRWDD 551
             M++  G  D+
Sbjct: 634 SRMFSSAGMEDE 645



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 189/395 (47%), Gaps = 53/395 (13%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +++ Y + G + +A  LF+ MP+R+V+SW A+++ +   GD+A+A   FD MP R++ 
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S +AL+S  ++      A  +  K  ++         +Y  +I G  +   + EA  +++
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAKN------AVSYGAIISGLAKAEMLHEAELVYE 155

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           ++P             R+ V  N+++  Y + G++  A  +FE M  RD  SW+ M+ G 
Sbjct: 156 EMPWQW----------RDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGL 205

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                + EA  +F  MP  + ++W +M+ GY + G           M +  L+       
Sbjct: 206 CKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRG-----------MCRDGLL------- 247

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP- 362
                        LF+ M+ EG + +  T S  L   +       G+QIH ++       
Sbjct: 248 -------------LFLNMRREGVQVNTTTLSVALDACAAASLAREGIQIHNLIISMGFEL 294

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           D+ + +++I MY+R G +V+A+  F+ M+  K++VSWN++I G   H    EA  LFK M
Sbjct: 295 DIFLGDSIIIMYSRFGCMVDAKRAFDCMQ-QKDIVSWNSLITGYVQHDMVEEAHVLFKLM 353

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
                    +++ S++   A+ G + E  + F+ M
Sbjct: 354 HQKDA----VSWTSMVVGFANRGWMRESVELFEQM 384



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 153/315 (48%), Gaps = 8/315 (2%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N+++  Y + G +  A+ +F+QM  RD  SW  +++ Y    D+  A  +F  MP  +  
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           +WNA++S Y +      A   F +MP KN VS+ ++I+G    +    A  ++ +M  + 
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPWQW 161

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARI 385
             P     +++++    + +L + +++ + +T   + DV   +A++    + G++ EAR 
Sbjct: 162 RDPVGS--NALMAGYLRVGELAMALRVFEGMT---VRDVISWSAMVDGLCKHGSVSEARR 216

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F+ M   +NVVSW +MI G    G   + L LF +MR   V     T    L ACA A 
Sbjct: 217 VFDAMP-ERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAAS 275

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           L  EG Q   +++   G E  I    S++ +  R G + DA      M  + D   W +L
Sbjct: 276 LAREGIQ-IHNLIISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQ-QKDIVSWNSL 333

Query: 506 LGACRVHNNVELAQV 520
           +     H+ VE A V
Sbjct: 334 ITGYVQHDMVEEAHV 348


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 209/619 (33%), Positives = 339/619 (54%), Gaps = 62/619 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y K   +  A ++FDEMP + V SWN+++SGY  ++G G LEEA  +F+ MPE D 
Sbjct: 54  LMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGY--AKG-GRLEEAHRVFEEMPEPDS 110

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPA--------------------------RNVVSW 94
           V+W  +I GY + G+ E A+ +F  M +                          R V S+
Sbjct: 111 VSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSF 170

Query: 95  -------------NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                        N++++ + ++GD   A   FDRM  + ++S + ++S  +Q+G +D A
Sbjct: 171 VVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLA 230

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
                +   R     D+V ++N +I GY Q G   EA  +F K+ ++          K +
Sbjct: 231 QVQFEQMIER-----DVV-SWNAMISGYNQHGFDREALDIFSKMLMDSSS-------KPD 277

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQML--ERDTFS--WNTMISGYIHVLDMEEASNLFV 257
             +  S +   A   ++   ++I   ++  E DTF    N +IS Y     +E A  +  
Sbjct: 278 KFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIE 337

Query: 258 K--MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           +  + + D + + A++ GY ++G++  A   F  +  +++V+W +MI G   N   + A+
Sbjct: 338 QSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAM 397

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMY 374
           +LF  M  EG KP+ +T +++LS+SS +  L  G QIH   T++     V ++NALITMY
Sbjct: 398 ELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMY 457

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           A+ G+I +AR +F  +   ++ ++W +MI   A HG   EAL LF+ M    + P +IT+
Sbjct: 458 AKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITY 517

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           + VLSAC H GLVE+GR ++  M N + I P   H+A ++D+ GR G L++A   I+ MP
Sbjct: 518 VGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMP 577

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANE 554
            EPD   WG+LL +C+VH NVELA+VAAE L+ +EPENS  Y  L N+Y+  G+W++A  
Sbjct: 578 IEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAAN 637

Query: 555 VRLLMKSNNIKKPTGYSWV 573
           +R  MK   +KK  G+SWV
Sbjct: 638 IRKSMKDKGVKKDQGFSWV 656



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 157/338 (46%), Gaps = 73/338 (21%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N+++  YAK G +  A  +F++M  +  FSWN ++SGY     +EEA  +F +MP PD++
Sbjct: 52  NNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSV 111

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           +W AM+ GY Q+G                                +E AI +F +M  + 
Sbjct: 112 SWTAMIVGYNQMGQ-------------------------------FENAIGMFREMVSDD 140

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEAR 384
             P + T +++L+  + +  L +G ++H  V K  +   + + N+L+ MYA+ G  V A+
Sbjct: 141 VPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAK 200

Query: 385 IIFEEMKLL------------------------------KNVVSWNAMIGGCASHGFATE 414
           I+F+ MKL                               ++VVSWNAMI G   HGF  E
Sbjct: 201 IVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDRE 260

Query: 415 ALELF-KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA-- 471
           AL++F K +      P   T  S LSACA+   ++ G+Q     ++ + I    + F   
Sbjct: 261 ALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQ-----IHAHIIRTEFDTFGAV 315

Query: 472 --SLVDIVGRHGRLEDAMDLI-KGMPFEPDKAVWGALL 506
             +L+ +  + G +E A  +I + M    D   + ALL
Sbjct: 316 GNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALL 353


>gi|115461705|ref|NP_001054452.1| Os05g0112900 [Oryza sativa Japonica Group]
 gi|45680436|gb|AAS75237.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578003|dbj|BAF16366.1| Os05g0112900 [Oryza sativa Japonica Group]
 gi|215715346|dbj|BAG95097.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215736909|dbj|BAG95838.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629956|gb|EEE62088.1| hypothetical protein OsJ_16872 [Oryza sativa Japonica Group]
          Length = 661

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 307/564 (54%), Gaps = 32/564 (5%)

Query: 17  LFDEMPQRD-VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC--VTWNTV-ISGYAK 72
           +FD MP+RD  V++  M+  ++  R    L  A  L+   P  DC  +  +TV + GY K
Sbjct: 80  MFDGMPRRDDAVAYAAMVGIHLWDRD---LPHAEALYRAAPP-DCRGIHLDTVMLDGYVK 135

Query: 73  TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGL 132
            G+++ A RLF+ M  +NVV+W  M+SG+ + G V  A   FD MP R+  S + +V G 
Sbjct: 136 AGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGY 195

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
             NG L EA  +  K   R       V A+  ++  Y   G ++EA +LF+++P      
Sbjct: 196 AHNGMLREAREMFDKMPERN------VVAWTVMVKAYVDNGCIQEALELFNRMP------ 243

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
                 + N  SWN+M      AG V  A ++F++M  ++  SW  M++G      +  A
Sbjct: 244 ------QMNSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRA 297

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
              F +MP  D   WN+M++ Y   G +  A   F  MP KNLV+WN +I G   N   +
Sbjct: 298 REFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKD 357

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALI 371
            A++LF+ M      PD  T  S+L +S   +++    QIH + TK    P+  + N L+
Sbjct: 358 EALRLFLLMLRSAVSPDSTTLISVLVVSESTMEVR---QIHGLSTKLGYQPETNLGNTLV 414

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
           +MY+R G +  A + F  +   K+ ++W +MI   A+HG A  AL+ F  M      P+ 
Sbjct: 415 SMYSRSGDLSSAWLAFRRLNE-KDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSS 473

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
            TF +VLSAC H GLVE+GR+ FKS+ + YG+ P IEH++ LVD++GR G + +A +++ 
Sbjct: 474 TTFTAVLSACNHVGLVEKGRKIFKSISHVYGLGPTIEHYSCLVDLLGRAGYVREAKEVVD 533

Query: 492 GMPFE-PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           GM  +  D+A+ G LLG+C  HN VE+ +   E L+K++P  S  Y LL N++A  G W+
Sbjct: 534 GMQRDMCDEAILGTLLGSCMTHNEVEVGRAVGEDLVKIDPSGSGGYTLLANVFASGGMWN 593

Query: 551 DANEVRLLMKSNNIKKPTGYSWVD 574
           +   V  +MK + +KK  G+S ++
Sbjct: 594 EVASVWKIMKGSKVKKTPGFSQIE 617



 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 231/448 (51%), Gaps = 60/448 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+ GYVK  ++ +AR+LFD M  ++VV+W  M+SGY  +   G ++EAR LFD+MP R+ 
Sbjct: 129 MLDGYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRA---GLVDEARRLFDLMPYRNV 185

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +W T++ GYA  G + EA  +F+ MP RNVV+W  M+  ++ NG +  A+E F+RMP  
Sbjct: 186 FSWTTMVQGYAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQM 245

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +S S +A+ +GL+  G++D+A ++  K   +       V ++  ++ G  Q G V  AR+
Sbjct: 246 NSYSWNAMATGLMSAGKVDDAVQLFDKMPHKN------VVSWTIMVTGLAQNGFVSRARE 299

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            FD++P            K++I +WNSMI  Y   G V  A+ +F+ M  ++  +WN +I
Sbjct: 300 FFDRMP------------KKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIII 347

Query: 241 SGYIHVLDMEEASNLFVKM------P------------------------------HPDT 264
            GY      +EA  LF+ M      P                               P+T
Sbjct: 348 DGYSMNNLKDEALRLFLLMLRSAVSPDSTTLISVLVVSESTMEVRQIHGLSTKLGYQPET 407

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
              N +VS Y++ G+L  A   F+R+ +K+ ++W SMI     +     A++ F QM   
Sbjct: 408 NLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQMLRC 467

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVE 382
           G KP   TF+++LS  + +  +  G +I + ++    + P +   + L+ +  R G + E
Sbjct: 468 GYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVYGLGPTIEHYSCLVDLLGRAGYVRE 527

Query: 383 ARIIFEEMKL-LKNVVSWNAMIGGCASH 409
           A+ + + M+  + +      ++G C +H
Sbjct: 528 AKEVVDGMQRDMCDEAILGTLLGSCMTH 555


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 211/649 (32%), Positives = 328/649 (50%), Gaps = 100/649 (15%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y+  R+ A+  ++  E    D+V  N MIS Y+     G L +AR LFD MPER+ V+W+
Sbjct: 66  YLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQW---GNLVQARLLFDEMPERNEVSWS 122

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---- 120
            +ISG  K G +EE++  F   P +NVVSW A ISGF++NG    A++ F R+       
Sbjct: 123 ALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRP 182

Query: 121 DSASLSALVSGLIQNGELDEAARVL---VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           +  + +++V    + G+      +L   VK G      E  +   N+LI    + G ++ 
Sbjct: 183 NDVTFTSVVRACGELGDFGLGMSILGLVVKAGF-----EHYLSVSNSLITLSLRMGEIDL 237

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           AR++FD++             KR++VSW +++  Y + GD+  AR IF++M ER+  SW+
Sbjct: 238 ARRVFDRME------------KRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWS 285

Query: 238 TMISGYIHVLDMEEASNLFVKMPH------------------------------------ 261
            MI+ Y      EEA  LF KM                                      
Sbjct: 286 AMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKI 345

Query: 262 ---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM----------------- 301
               D    ++++  Y + G  +     F  + +KN+V WNSM                 
Sbjct: 346 GIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEXEELF 405

Query: 302 --------------IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
                         JAG   N+  E  +++F  + V G+ P++ TFSS+L   + I  L 
Sbjct: 406 ELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLD 465

Query: 348 LGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
            GM +H  + K  I  D+ +  AL  MYA+CG I  ++ +FE M   KN +SW  MI G 
Sbjct: 466 KGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMP-EKNEISWTVMIQGL 524

Query: 407 ASHGFATEALELFKSM-RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
           A  GFA E+L LF+ M R+ +V P  +  +SVL AC+H GLV++G  +F SM   YGI+P
Sbjct: 525 AESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKP 584

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
           + +H+  +VD++ R GRL +A + I+ +PF+P+   W ALL  C+ + + ++A+  A+ L
Sbjct: 585 KGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKL 644

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            ++   NS  YVLL N+YA  GRW D + +R LM+   +KK  G SWV+
Sbjct: 645 WQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVE 693



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 160/337 (47%), Gaps = 35/337 (10%)

Query: 208 MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW 267
           +++ Y          +I ++    D    N MIS Y+   ++ +A  LF +MP  + ++W
Sbjct: 62  LLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSW 121

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           +A++SG  + G +E ++ +F+R P +N+VSW + I+G   N     A+KLF ++   G +
Sbjct: 122 SALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVR 181

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITM------------- 373
           P+  TF+S++     + D  LGM I  +V K      + ++N+LIT+             
Sbjct: 182 PNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRV 241

Query: 374 ------------------YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
                             Y   G + EAR IF+EM   +N +SW+AMI   +  G+A EA
Sbjct: 242 FDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMP-ERNEISWSAMIARYSQSGYAEEA 300

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L+LF  M      P    F   LSA A    +  G  +    V + GI+  +   +SL+D
Sbjct: 301 LKLFSKMVQEGFKPNISCFACTLSALASLRALSAG-INIHGHVTKIGIDKDVFIGSSLID 359

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           +  + G+ +D   L+  +  E +   W +++G   ++
Sbjct: 360 LYCKCGKPDDG-RLVFDLILEKNVVCWNSMVGGYSIN 395


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 220/706 (31%), Positives = 342/706 (48%), Gaps = 148/706 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K   +  +R+LFD+MP+RD+ +WN ++  Y  +     LE+A  LF  MPER+ 
Sbjct: 46  LIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASE---LEDAHVLFAEMPERNI 102

Query: 61  VTWNTVISG-----------------------------------------YAKTGEMEEA 79
           V+WNT+IS                                          YAK   + +A
Sbjct: 103 VSWNTLISALTRNGACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDA 162

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQN 135
           ++ F  +P  N VS+ AM+ G   +  V  A   F  M       DS SLS+++    + 
Sbjct: 163 IQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRG 222

Query: 136 G----ELDEAARVL--------VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           G     L ++  VL        V C +   G E  +   N+L+  Y + G ++ A  +F 
Sbjct: 223 GCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFV 282

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYA------------------------------ 213
            +P            + ++VSWN MI  Y                               
Sbjct: 283 NMP------------EVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNM 330

Query: 214 -----KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDT 264
                K+GD+ + R++F+ M      SWNT++SGY    + +EA  LF +M     HPD 
Sbjct: 331 LVACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDR 390

Query: 265 LTWNAMVSG-----------------------------------YAQIGNLELALDFFKR 289
            T   ++S                                    Y++ G +E+A   F R
Sbjct: 391 TTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDR 450

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
           + + ++V WNSM+AG   N   + A   F +M+ +G  P + +++++LS  + +  L  G
Sbjct: 451 IAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQG 510

Query: 350 MQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
            Q+H Q+  +  + D  + +ALI MY++CG +  AR +F+ M L KN V+WN MI G A 
Sbjct: 511 RQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFD-MMLGKNTVTWNEMIHGYAQ 569

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           +G   EA+ L++ M      P  ITF++VL+AC+H+GLV+ G + F SM  E+G+EP ++
Sbjct: 570 NGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVD 629

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528
           H+  ++D +GR GRL +A  LI  MP + D  +W  LL +CRV+ +V LA+ AAE L  +
Sbjct: 630 HYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHL 689

Query: 529 EPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +P+NS PYVLL N+Y+ +GRWDDA  VR LM  N + K  GYSW++
Sbjct: 690 DPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIE 735



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 139/531 (26%), Positives = 235/531 (44%), Gaps = 88/531 (16%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D    N +I  YAK   ++ + RLF+ MP R++ +WNA++  + +  ++ +A   F  MP
Sbjct: 39  DTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMP 98

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
            R+  S + L+S L +NG     A V V+CG RC G    +   N + VG    G   + 
Sbjct: 99  ERNIVSWNTLISALTRNGAC--GALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKC 156

Query: 179 RKLFDKIPVNCDRGEGNV-----------------------------RFKRNIVSWNSMI 209
           R + D I    D  E N                              R   + VS +S++
Sbjct: 157 RCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVL 216

Query: 210 MCYAKAG----------DVVSAREIFEQM--------LERDTFSWNTMISGYIHVLDMEE 251
              ++ G          DV+S+    +Q+         E D    N+++  Y    +M+ 
Sbjct: 217 GVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDS 276

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQ----------------------------------- 276
           A  +FV MP    ++WN M++GY Q                                   
Sbjct: 277 AEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIK 336

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            G++E     F  M   +L SWN++++G   N++++ A+KLF +MQ     PDR T + I
Sbjct: 337 SGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAII 396

Query: 337 LSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           LS  +G++ L  G Q+H +  K V   D+ + + LI MY++CG +  A+ IF+ +  L +
Sbjct: 397 LSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAEL-D 455

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           +V WN+M+ G + +    EA   FK MR   + P+  ++ +VLS CA    + +GRQ   
Sbjct: 456 IVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQ-VH 514

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           S +   G        ++L+D+  + G + DA   +  M    +   W  ++
Sbjct: 515 SQIAREGYMNDAFVGSALIDMYSKCGDV-DAARWVFDMMLGKNTVTWNEMI 564



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 156/373 (41%), Gaps = 52/373 (13%)

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
           AG ++ A  +    L  DTF  N +I  Y     ++ +  LF +MP  D  TWNA++  Y
Sbjct: 23  AGKLIHA-HMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAY 81

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
            +   LE A   F  MP++N+VSWN++I+    N    GA                    
Sbjct: 82  CKASELEDAHVLFAEMPERNIVSWNTLISALTRN----GA-------------------- 117

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLL 393
                   +VD+  G + H +  K  +  ++ + NAL+ MYA+C  I +A   F ++   
Sbjct: 118 -----CGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVP-E 171

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR-- 451
            N VS+ AM+GG A      EA  LF+ M   ++    ++  SVL  C+  G  E G   
Sbjct: 172 PNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHD 231

Query: 452 -----------QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
                      Q    +  ++G E  +    SL+D+  ++G ++ A  +   MP E    
Sbjct: 232 SNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMP-EVSVV 290

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY-NMYADVGRWDDANEVRLLM 559
            W  ++     +     +  A E L +++     P  + Y NM     +  D    R + 
Sbjct: 291 SWNVMIAG---YGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMF 347

Query: 560 KSNNIKKPTGYSW 572
             + +  P+  SW
Sbjct: 348 --DGMSSPSLSSW 358


>gi|125602089|gb|EAZ41414.1| hypothetical protein OsJ_25936 [Oryza sativa Japonica Group]
          Length = 1165

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 196/612 (32%), Positives = 331/612 (54%), Gaps = 71/612 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y +R  +  A+ LFD+MP RDV+SW  +++ Y      G L  AR +FD MP R+ 
Sbjct: 44  LLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADG---GDLASARLVFDDMPRRNA 100

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW-------------------------- 94
            +WN ++S Y +      A  LF  MPA+N VS+                          
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPWQ 160

Query: 95  -------NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
                  NA+++G+L+ G++A A+  F+ M  RD  S SA+V GL ++G + EA RV   
Sbjct: 161 WRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDA 220

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF-----DKIPVN----------CDRG 192
              R       V ++ ++I GY +RG   +   LF     + + VN          C   
Sbjct: 221 MPERN------VVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAA 274

Query: 193 ----EG--------NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
               EG        ++ F+ +I   +S+I+ Y++ G +V A+  F+ M ++D  SWN++I
Sbjct: 275 SLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLI 334

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    +EEA  LF  M   D ++W +MV G+A  G +  +++ F++MP K+ V+W +
Sbjct: 335 TGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTA 394

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKT 359
           +I+   TN DY  A++ F +M  EG KP+   FS +LS  + +  L+ G Q H   +   
Sbjct: 395 IISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMG 454

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
            + D  ++ +L++MYA+CG + EA  +F  +    ++++ N+MI     HGF  +AL+LF
Sbjct: 455 WVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISN-PSLIAINSMITAFVQHGFVEDALKLF 513

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M++    P ++TF+ +L+ CA AG V++G  +F+SM   YG+EP  EH+  +VD++GR
Sbjct: 514 TKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGR 573

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G L +A+++I  MP       W ALL A  +H+N+  A++AA+ L++ +P ++T Y +L
Sbjct: 574 AGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYDATAYTVL 633

Query: 540 YNMYADVGRWDD 551
             M++  G  D+
Sbjct: 634 SRMFSSAGMEDE 645



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 189/395 (47%), Gaps = 53/395 (13%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +++ Y + G + +A  LF+ MP+R+V+SW A+++ +   GD+A+A   FD MP R++ 
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S +AL+S  ++      A  +  K  ++         +Y  +I G  +   + EA  +++
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAKN------AVSYGAIISGLAKAEMLHEAELVYE 155

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           ++P             R+ V  N+++  Y + G++  A  +FE M  RD  SW+ M+ G 
Sbjct: 156 EMPWQW----------RDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGL 205

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                + EA  +F  MP  + ++W +M+ GY + G           M +  L+       
Sbjct: 206 CKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRG-----------MCRDGLL------- 247

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP- 362
                        LF+ M+ EG + +  T S  L   +       G+QIH ++       
Sbjct: 248 -------------LFLNMRREGVQVNTTTLSVALDACAAASLAREGIQIHNLIISMGFEL 294

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           D+ + +++I MY+R G +V+A+  F+ M+  K++VSWN++I G   H    EA  LFK M
Sbjct: 295 DIFLGDSIIIMYSRFGWMVDAKRAFDCMQ-QKDIVSWNSLITGYVQHDMVEEAHVLFKLM 353

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
                    +++ S++   A+ G + E  + F+ M
Sbjct: 354 HQKDA----VSWTSMVVGFANRGWMRESVELFEQM 384



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 121/313 (38%), Gaps = 66/313 (21%)

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           NA+++ Y + G L  A   F +MP ++++SW +++       D   A  +F  M      
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMP-RRNA 100

Query: 328 PDRHTFSSI----------------------LSMSSGIVDLHLGMQIHQMVTKTVIPDVP 365
           P  +   S+                      +S  + I  L     +H+   + V  ++P
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHE--AELVYEEMP 158

Query: 366 I-------NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA--- 415
                   +NAL+  Y R G +  A  +FE M  +++V+SW+AM+ G   HG  +EA   
Sbjct: 159 WQWRDPVGSNALMAGYLRVGELAMALRVFEGMT-VRDVISWSAMVDGLCKHGSVSEARRV 217

Query: 416 ----------------------------LELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
                                       L LF +MR   V     T    L ACA A L 
Sbjct: 218 FDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLA 277

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
            EG Q   +++   G E  I    S++ +  R G + DA      M  + D   W +L+ 
Sbjct: 278 REGIQ-IHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQ-QKDIVSWNSLIT 335

Query: 508 ACRVHNNVELAQV 520
               H+ VE A V
Sbjct: 336 GYVQHDMVEEAHV 348


>gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Glycine max]
          Length = 678

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 212/649 (32%), Positives = 315/649 (48%), Gaps = 96/649 (14%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y + R +  A  LFDEMPQ +  SWN ++  +++S   G    A +LF+ MP +   +WN
Sbjct: 46  YSRCRNLQDASHLFDEMPQTNSFSWNTLVQAHLNS---GHTHSALHLFNAMPHKTHFSWN 102

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM---PG-- 119
            V+S +AK+G ++ A  LFN+MP++N + WN++I  + ++G    A+  F  M   P   
Sbjct: 103 MVVSAFAKSGHLQLAHSLFNAMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDPSQI 162

Query: 120 --RDS----ASLSALVSGLIQNGELDEAARVLV--------------------KCGSRCD 153
             RD+     +L A    L  N      ARV V                    KCG   D
Sbjct: 163 VYRDAFVLATALGACADSLALNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDL-D 221

Query: 154 GGEDLVR--------AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
               +V         + + LI GY   GR+ EAR +FD     C             V W
Sbjct: 222 SAARIVSFVRDVDEFSLSALISGYANAGRMREARSVFDSKVDPC------------AVLW 269

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLE----------------------------------- 230
           NS+I  Y   G+ V A  +F  ML                                    
Sbjct: 270 NSIISGYVSNGEEVEAVNLFSAMLRNGVQGDASAVANILSAASGLLVVELVKQMHVYACK 329

Query: 231 ----RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
                D    ++++  Y       EA  LF ++   DT+  N M++ Y+  G +E A   
Sbjct: 330 AGVTHDIVVASSLLDAYSKCQSPCEACKLFSELKEYDTILLNTMITVYSNCGRIEDAKLI 389

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F  MP K L+SWNS++ G   N     A+ +F QM     K DR +F+S++S  +    L
Sbjct: 390 FNTMPSKTLISWNSILVGLTQNACPSEALNIFSQMNKLDLKMDRFSFASVISACACRSSL 449

Query: 347 HLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
            LG Q+  + +T  +  D  I+ +L+  Y +CG +   R +F+ M +  + VSWN M+ G
Sbjct: 450 ELGEQVFGKAITIGLESDQIISTSLVDFYCKCGFVEIGRKVFDGM-VKTDEVSWNTMLMG 508

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
            A++G+  EAL LF  M    V P+ ITF  VLSAC H+GLVEEGR  F +M + Y I P
Sbjct: 509 YATNGYGIEALTLFCEMTYGGVWPSAITFTGVLSACDHSGLVEEGRNLFHTMKHSYNINP 568

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
            IEHF+ +VD+  R G  E+AMDLI+ MPF+ D  +W ++L  C  H N  + ++AAE +
Sbjct: 569 GIEHFSCMVDLFARAGYFEEAMDLIEEMPFQADANMWLSVLRGCIAHGNKTIGKMAAEQI 628

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +++EPEN+  Y+ L N+ A  G W+ +  VR LM+  + +K  G SW D
Sbjct: 629 IQLEPENTGAYIQLSNILASSGDWEGSALVRELMRDKHFQKIPGCSWAD 677



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/480 (25%), Positives = 214/480 (44%), Gaps = 50/480 (10%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N ++  Y++   +++A  LF+ MP  N  SWN ++   L +G   +A+  F+ MP +   
Sbjct: 40  NRLLQLYSRCRNLQDASHLFDEMPQTNSFSWNTLVQAHLNSGHTHSALHLFNAMPHKTHF 99

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S + +VS   ++G L  A  +     S+      LV  +N++I  Y + G   +A  LF 
Sbjct: 100 SWNMVVSAFAKSGHLQLAHSLFNAMPSK----NHLV--WNSIIHSYSRHGHPGKALFLFK 153

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMC----YAKAGDVVSAREIFEQM-LERDTFSWNT 238
            + ++       + ++   V   ++  C        G  V AR   + M LE D    ++
Sbjct: 154 SMNLD----PSQIVYRDAFVLATALGACADSLALNCGKQVHARVFVDGMGLELDRVLCSS 209

Query: 239 MISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
           +I+ Y    D++ A+ +   +   D  + +A++SGYA  G +  A   F        V W
Sbjct: 210 LINLYGKCGDLDSAARIVSFVRDVDEFSLSALISGYANAGRMREARSVFDSKVDPCAVLW 269

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           NS+I+G  +N +   A+ LF  M   G + D    ++ILS +SG++ + L  Q+H    K
Sbjct: 270 NSIISGYVSNGEEVEAVNLFSAMLRNGVQGDASAVANILSAASGLLVVELVKQMHVYACK 329

Query: 359 TVIP--------------------------------DVPINNALITMYARCGAIVEARII 386
             +                                 D  + N +IT+Y+ CG I +A++I
Sbjct: 330 AGVTHDIVVASSLLDAYSKCQSPCEACKLFSELKEYDTILLNTMITVYSNCGRIEDAKLI 389

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F  M   K ++SWN+++ G   +   +EAL +F  M    +     +F SV+SACA    
Sbjct: 390 FNTMP-SKTLISWNSILVGLTQNACPSEALNIFSQMNKLDLKMDRFSFASVISACACRSS 448

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +E G Q F   +   G+E       SLVD   + G +E    +  GM  + D+  W  +L
Sbjct: 449 LELGEQVFGKAIT-IGLESDQIISTSLVDFYCKCGFVEIGRKVFDGM-VKTDEVSWNTML 506



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 174/372 (46%), Gaps = 26/372 (6%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N ++  Y++  ++  A  +F++M + ++FSWNT++  +++      A +LF  MPH    
Sbjct: 40  NRLLQLYSRCRNLQDASHLFDEMPQTNSFSWNTLVQAHLNSGHTHSALHLFNAMPHKTHF 99

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           +WN +VS +A+ G+L+LA   F  MP KN + WNS+I     +     A+ LF  M ++ 
Sbjct: 100 SWNMVVSAFAKSGHLQLAHSLFNAMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDP 159

Query: 326 EK---PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP---DVPINNALITMYARCGA 379
            +    D    ++ L   +  + L+ G Q+H  V    +    D  + ++LI +Y +CG 
Sbjct: 160 SQIVYRDAFVLATALGACADSLALNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGD 219

Query: 380 I-VEARIIFEEMKLLKNV--VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           +   ARI+      +++V   S +A+I G A+ G   EA  +F S    KV P  + + S
Sbjct: 220 LDSAARIV----SFVRDVDEFSLSALISGYANAGRMREARSVFDS----KVDPCAVLWNS 271

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           ++S     G   E    F +M+   G++      A+++      G L   ++L+K M   
Sbjct: 272 IISGYVSNGEEVEAVNLFSAMLRN-GVQGDASAVANILSAAS--GLL--VVELVKQMHVY 326

Query: 497 PDKA-VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM---YADVGRWDDA 552
             KA V   ++ A  + +     Q   EA            +LL  M   Y++ GR +DA
Sbjct: 327 ACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSELKEYDTILLNTMITVYSNCGRIEDA 386

Query: 553 NEVRLLMKSNNI 564
             +   M S  +
Sbjct: 387 KLIFNTMPSKTL 398



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 22/171 (12%)

Query: 349 GMQIHQMVTKTVI--PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           G Q+H    KT I    V + N L+ +Y+RC  + +A  +F+EM    N  SWN ++   
Sbjct: 19  GRQLHVAFLKTGILNSSVAVANRLLQLYSRCRNLQDASHLFDEMP-QTNSFSWNTLVQAH 77

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
            + G    AL LF +M       T+ ++  V+SA A +G ++     F +M       P 
Sbjct: 78  LNSGHTHSALHLFNAMPH----KTHFSWNMVVSAFAKSGHLQLAHSLFNAM-------PS 126

Query: 467 IEHFA--SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW------GALLGAC 509
             H    S++    RHG    A+ L K M  +P + V+         LGAC
Sbjct: 127 KNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDPSQIVYRDAFVLATALGAC 177


>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
 gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 194/496 (39%), Positives = 271/496 (54%), Gaps = 26/496 (5%)

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG-ELDEAAR-VLVKC 148
           +V WNAMI G+  NG     I  FD MP R     +     +I +  EL+   R   V C
Sbjct: 19  IVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKRVHC 78

Query: 149 GSRCDGGEDLVRAYNTLI-----------VGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
                G E      N+L            VG     +++ ARK+FD + V          
Sbjct: 79  EIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCV---------- 128

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
             R +  WN MI  Y   GDV SARE+F+ M ERD  SWN+MI GY     +  A  LF 
Sbjct: 129 --RPVELWNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFE 186

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           KMP  + ++W +M+  YA   +LE A  FF+ MPQ+N+VSWNSMI+    +  +  ++ L
Sbjct: 187 KMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNL 246

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARC 377
           F+QMQ EG  PD +TF S+LS  S + DL  G  IH +       +V +  AL  MYA+C
Sbjct: 247 FVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSGDLSQSEVMVGTALTEMYAQC 306

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G + +A  +F ++   ++V  WN +I   A HG + EA+++F  MR   + P   TF S 
Sbjct: 307 GDVDKAFAVFIKIGK-RDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSA 365

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           L AC+H GLVEEG   F SM  +Y I P+I H+  L+D++ R+G+LE+AM L++ MPF+P
Sbjct: 366 LFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLVEDMPFQP 425

Query: 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
           D A+WGALLG CRV  +++LA+   E   ++E   S  YVLL N++A  G+W +A + R 
Sbjct: 426 DVAIWGALLGGCRVTGDLKLAEKVVEKATEMETNESGVYVLLSNIHASAGQWIEAADARK 485

Query: 558 LMKSNNIKKPTGYSWV 573
            M    I K TG S V
Sbjct: 486 KMDEKKISKKTGSSVV 501



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/466 (27%), Positives = 200/466 (42%), Gaps = 105/466 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------RG---------SG 43
           MI GY       +  ++FDEMPQR +   N      I+S        RG         SG
Sbjct: 25  MIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKRVHCEIVKSG 84

Query: 44  F------------------------------LEEARYLFDIMPERDCVTWNTVISGYAKT 73
           F                              L+ AR +FD M  R    WN +I  Y   
Sbjct: 85  FESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCVRPVELWNQMIGKYVNI 144

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI 133
           G+++ A  LF+ MP R++VSWN+MI G+ + G VANA   F++MP ++            
Sbjct: 145 GDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMPEKN------------ 192

Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
                                    V ++ ++I  Y     +E AR  F+ +P       
Sbjct: 193 -------------------------VISWTSMIGAYADTDDLETARSFFETMP------- 220

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDM 249
                +RN+VSWNSMI  YAK G  V +  +F QM    +  D +++ +++S   ++ D+
Sbjct: 221 -----QRNVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDL 275

Query: 250 EEASNLFV---KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           E    +      +   + +   A+   YAQ G+++ A   F ++ ++++  WN +I    
Sbjct: 276 EFGKYIHYLSGDLSQSEVMVGTALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALA 335

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDV 364
            +   E AIK+F+ M+  G KP+  TF+S L   S    +  G  I   + K   +IP +
Sbjct: 336 LHGRSEEAIKIFLLMRKTGLKPNDFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKI 395

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
                LI M  R G + EA ++ E+M    +V  W A++GGC   G
Sbjct: 396 THYGCLIDMLCRNGQLEEAMLLVEDMPFQPDVAIWGALLGGCRVTG 441



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 162/331 (48%), Gaps = 32/331 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI  YV   ++  AR+LFD MP+RD+VSWN MI GY  ++G G +  AR LF+ MPE++ 
Sbjct: 137 MIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGY--AKG-GKVANARGLFEKMPEKNV 193

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++W ++I  YA T ++E A   F +MP RNVVSWN+MIS + ++G    ++  F +M   
Sbjct: 194 ISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSE 253

Query: 121 ----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               D  +  +++S     G+L+    +    G   D  +  V     L   Y Q G V+
Sbjct: 254 GVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSG---DLSQSEVMVGTALTEMYAQCGDVD 310

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERD 232
           +A  +F KI             KR++  WN +I   A  G    A +IF  M    L+ +
Sbjct: 311 KAFAVFIKIG------------KRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPN 358

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFF 287
            F++ + +    H   +EE   +F  M       P    +  ++    + G LE A+   
Sbjct: 359 DFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLV 418

Query: 288 KRMP-QKNLVSWNSMIAGCETNKDYEGAIKL 317
           + MP Q ++  W +++ GC    D + A K+
Sbjct: 419 EDMPFQPDVAIWGALLGGCRVTGDLKLAEKV 449



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 139/325 (42%), Gaps = 28/325 (8%)

Query: 249 MEEASNLFVKMPH---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL----VSWNSM 301
           M+ ++ +F +M H    + + WNAM+ GYA  G  +  +  F  MPQ+ L     ++  +
Sbjct: 1   MDYSNLIFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYV 60

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI---VDLHLGMQIHQMVTK 358
           I  C   + Y    ++  ++   G +      +S+ +M   +    D+ L         +
Sbjct: 61  INSCCELEWYGRGKRVHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYAR 120

Query: 359 TVIPD-----VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
            +  D     V + N +I  Y   G +  AR +F+ M   +++VSWN+MI G A  G   
Sbjct: 121 KIFDDMCVRPVELWNQMIGKYVNIGDVKSARELFDIMP-ERDIVSWNSMILGYAKGGKVA 179

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
            A  LF+ M    V    I++ S++ A A    +E  R  F++M      +  +  + S+
Sbjct: 180 NARGLFEKMPEKNV----ISWTSMIGAYADTDDLETARSFFETMP-----QRNVVSWNSM 230

Query: 474 VDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
           +    +HG+  ++++L   M  E   PD   + ++L AC    ++E  +        +  
Sbjct: 231 ISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSGDLSQ 290

Query: 531 ENSTPYVLLYNMYADVGRWDDANEV 555
                   L  MYA  G  D A  V
Sbjct: 291 SEVMVGTALTEMYAQCGDVDKAFAV 315


>gi|242080473|ref|XP_002445005.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
 gi|241941355|gb|EES14500.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
          Length = 679

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 202/634 (31%), Positives = 342/634 (53%), Gaps = 71/634 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y +R  +  A++LFD MP RDV+SW  +++ Y      G L  AR++FD MP R+ 
Sbjct: 47  LLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADV---GNLASARFVFDDMPLRNA 103

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW-------------------------- 94
            +WN ++S Y + G    A  LF   PA+N VS+                          
Sbjct: 104 ASWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPPR 163

Query: 95  -------NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
                  NAMI G+L+ G++  A+  FD M  RD  S SA+V GL + G + EA R+   
Sbjct: 164 WRDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFEA 223

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF-----DKIPVN----------CDRG 192
              R       V ++ ++I GY + G   +   LF     + + VN          C + 
Sbjct: 224 MPERN------VVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQA 277

Query: 193 ----EGN--------VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
               EG+        + F  +I   +S+I+ Y++ G +  AR +F  M ++D  SWN++I
Sbjct: 278 SLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSWNSLI 337

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    +E+A  LF  MP  D ++W +MV G+A  G +  +++ F++MP K+ ++W +
Sbjct: 338 TGYVQNDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQMPVKDEIAWAA 397

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKT 359
           +++    N +Y  A++ F QM  EG +P+   FS +LS  + +  L+ G+Q H   V   
Sbjct: 398 VMSSLVANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLNQGLQAHAYAVNMG 457

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
            I D  ++ +L+TMYA+CG + EA  +F  +    ++++ N+MI   A HG A +A +LF
Sbjct: 458 WIFDSAVHASLVTMYAKCGRLAEAHRVFSCISH-PSLIATNSMITAFAQHGLAEDAFKLF 516

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M+     P ++TF+ +L+ACA AGLV+ G  +F+SM + YGI+P  +H+  +VD++GR
Sbjct: 517 NRMQYDGQRPNHVTFLGILTACARAGLVQHGYNYFESMRSVYGIQPNPDHYTCMVDLLGR 576

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G L +A+++   MP +     W  LL +  +H+N++LA++AA+ L++++P ++T Y +L
Sbjct: 577 AGFLNEALEMTNSMPQKDYPDAWKVLLSSSSLHSNLDLAKLAAQRLLEIDPYDATAYTVL 636

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            NM++  G  +D   V++   SN   K  GYS +
Sbjct: 637 SNMFSSAGMKEDEEMVKVAQLSNMASKSPGYSLI 670



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 213/458 (46%), Gaps = 56/458 (12%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +++ Y + G +++A +LF+ MP R+V+SW A+++ +   G++A+A   FD MP R++A
Sbjct: 45  NALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMPLRNAA 104

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S +ALVS  ++ G    AA  L      C        +Y  +I G  + G + EA+ ++ 
Sbjct: 105 SWNALVSLYLRAGR-PAAAHALF-----CKAPAKNAVSYGAIITGLARAGMLREAQAVYW 158

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           ++P             R+ V  N+MI  Y + G++  A  +F+ M  RD  SW+ M+ G 
Sbjct: 159 EMPPRW----------RDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGL 208

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG----NLELALDFFKRMPQKNLVSWN 299
                + EA  LF  MP  + ++W +M+ GY + G     L L LD  +   Q N+++ +
Sbjct: 209 CKYGTVSEARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLS 268

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
            ++ GC      +   ++   M   G   D     S++ M S    +     +   + + 
Sbjct: 269 VVLDGCAQASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQK 328

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              D+   N+LIT Y +   I +A ++F+ M   K+ +SW +M+ G A+ G+  E++ELF
Sbjct: 329 ---DIVSWNSLITGYVQNDMIEDAHVLFKLMP-EKDAISWTSMVVGFANRGWMRESVELF 384

Query: 420 KSM-------------------------RSFKVL------PTYITFISVLSACAHAGLVE 448
           + M                         R F  +      P  + F  +LSA A   ++ 
Sbjct: 385 EQMPVKDEIAWAAVMSSLVANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLN 444

Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           +G Q     VN   I     H ASLV +  + GRL +A
Sbjct: 445 QGLQAHAYAVNMGWIFDSAVH-ASLVTMYAKCGRLAEA 481



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 156/348 (44%), Gaps = 12/348 (3%)

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           +IP         VR   N    N+++  Y + G +  A+++F++M  RD  SW  +++ Y
Sbjct: 23  RIPCQQHLLPPPVRALPNRAHLNALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAY 82

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
             V ++  A  +F  MP  +  +WNA+VS Y + G    A   F + P KN VS+ ++I 
Sbjct: 83  ADVGNLASARFVFDDMPLRNAASWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIIT 142

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363
           G         A  ++ +M      P          +  G     LGM + ++       D
Sbjct: 143 GLARAGMLREAQAVYWEMPPRWRDPVGSNAMIWGYLRGG----ELGMAL-RVFDGMAARD 197

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           V   +A++    + G + EAR +FE M   +NVVSW +MI G   HG   + L LF  MR
Sbjct: 198 VISWSAMVDGLCKYGTVSEARRLFEAMP-ERNVVSWTSMIRGYVKHGMYRDGLLLFLDMR 256

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
              V    IT   VL  CA A LV+EG Q    M+   G    I    SL+ +  R G +
Sbjct: 257 REGVQVNMITLSVVLDGCAQASLVDEGSQVHCLMI-RMGFAEDIFLGDSLIIMYSRFGSM 315

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            DA  L   M  + D   W +L+     ++ +E A V    L K+ PE
Sbjct: 316 ADARSLFSFMN-QKDIVSWNSLITGYVQNDMIEDAHV----LFKLMPE 358


>gi|255587181|ref|XP_002534168.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525755|gb|EEF28217.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 513

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 173/438 (39%), Positives = 268/438 (61%), Gaps = 23/438 (5%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGY+       AR++FD+MP+RD+ +WNVM+SGY+ ++    L +AR LF+ MP RD 
Sbjct: 94  MISGYLSNGRFDLAREMFDKMPERDLFTWNVMLSGYVRNKN---LTDARGLFERMPRRDV 150

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN ++SGYA+ G + EA  +F+ MP +N +SWN +++ ++QNG + +A   F+     
Sbjct: 151 VSWNAMLSGYAQNGFIAEAREIFDEMPVKNSISWNGLLAAYVQNGRIEDARRLFESKMDW 210

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  S + L+ G ++   L +A RV  +   R     D V ++NT+I GY Q G +EEARK
Sbjct: 211 DVVSWNCLMGGFVKKKRLVDARRVFDRIPVR-----DEV-SWNTMITGYAQNGELEEARK 264

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF++ P             +++ +W +M+  Y + G V  AR IF++M E+++ SWN MI
Sbjct: 265 LFEESPT------------QDVFTWTAMVSGYVQNGMVDEARSIFDKMPEKNSVSWNAMI 312

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +GY+    M+ A  LF  MP  +  +WN M++GYAQ GN+  A + F RMPQ++ +SW++
Sbjct: 313 AGYVQCKRMDMAKELFEAMPFRNISSWNTMITGYAQSGNVPHARNLFDRMPQRDSISWSA 372

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT- 359
           MIAG   N   E A+ L+++M+ +GE  +R +F+S+L+  + I  L LG Q H  + K  
Sbjct: 373 MIAGYVQNGCNEEAVHLYVEMKRDGESLNRSSFTSVLTACADIAALDLGKQFHGWLVKVG 432

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
                 + NAL+ MY +CG+I EA   F E+   K+++SWN MI G A HGF  EAL +F
Sbjct: 433 YQTGCYVGNALLAMYCKCGSIDEADDAFHEI-TDKDLISWNTMIYGYARHGFGKEALIVF 491

Query: 420 KSMRSFKVLPTYITFISV 437
           +SM++  V P   T ++V
Sbjct: 492 ESMKTVGVKPDEATMVTV 509



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 184/391 (47%), Gaps = 33/391 (8%)

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +N  I  + + G+   A ++F+ +P            +R+ V++N+MI  Y   G    A
Sbjct: 60  WNMAITTHMRNGQCHSALQVFNTMP------------RRSTVTYNAMISGYLSNGRFDLA 107

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           RE+F++M ERD F+WN M+SGY+   ++ +A  LF +MP  D ++WNAM+SGYAQ G + 
Sbjct: 108 REMFDKMPERDLFTWNVMLSGYVRNKNLTDARGLFERMPRRDVVSWNAMLSGYAQNGFIA 167

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A + F  MP KN +SWN ++A    N   E A +LF       E        S   +  
Sbjct: 168 EAREIFDEMPVKNSISWNGLLAAYVQNGRIEDARRLF-------ESKMDWDVVSWNCLMG 220

Query: 342 GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           G V     +   ++  +  + D    N +IT YA+ G + EAR +FEE    ++V +W A
Sbjct: 221 GFVKKKRLVDARRVFDRIPVRDEVSWNTMITGYAQNGELEEARKLFEE-SPTQDVFTWTA 279

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           M+ G   +G   EA  +F  M         +++ ++++       ++  ++ F++M    
Sbjct: 280 MVSGYVQNGMVDEARSIFDKMPE----KNSVSWNAMIAGYVQCKRMDMAKELFEAMPFR- 334

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN--NVELAQ 519
                I  + +++    + G +  A +L   MP + D   W A++ A  V N  N E   
Sbjct: 335 ----NISSWNTMITGYAQSGNVPHARNLFDRMP-QRDSISWSAMI-AGYVQNGCNEEAVH 388

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           +  E     E  N + +  +    AD+   D
Sbjct: 389 LYVEMKRDGESLNRSSFTSVLTACADIAALD 419



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 166/321 (51%), Gaps = 22/321 (6%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           +IV+WN  I  + + G   SA ++F  M  R T ++N MISGY+     + A  +F KMP
Sbjct: 56  DIVNWNMAITTHMRNGQCHSALQVFNTMPRRSTVTYNAMISGYLSNGRFDLAREMFDKMP 115

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             D  TWN M+SGY +  NL  A   F+RMP++++VSWN+M++G   N     A ++F +
Sbjct: 116 ERDLFTWNVMLSGYVRNKNLTDARGLFERMPRRDVVSWNAMLSGYAQNGFIAEAREIFDE 175

Query: 321 MQVEGEKPDRHTFSSILS--MSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCG 378
           M V+    +  +++ +L+  + +G ++        ++    +  DV   N L+  + +  
Sbjct: 176 MPVK----NSISWNGLLAAYVQNGRIE-----DARRLFESKMDWDVVSWNCLMGGFVKKK 226

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
            +V+AR +F+ +  +++ VSWN MI G A +G   EA +LF+   +  V     T+ +++
Sbjct: 227 RLVDARRVFDRIP-VRDEVSWNTMITGYAQNGELEEARKLFEESPTQDVF----TWTAMV 281

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           S     G+V+E R  F  M  +  +      + +++    +  R++ A +L + MPF  +
Sbjct: 282 SGYVQNGMVDEARSIFDKMPEKNSVS-----WNAMIAGYVQCKRMDMAKELFEAMPFR-N 335

Query: 499 KAVWGALLGACRVHNNVELAQ 519
            + W  ++       NV  A+
Sbjct: 336 ISSWNTMITGYAQSGNVPHAR 356



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 144/302 (47%), Gaps = 22/302 (7%)

Query: 226 EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
           E+  + D  +WN  I+ ++       A  +F  MP   T+T+NAM+SGY   G  +LA +
Sbjct: 50  EKTTDSDIVNWNMAITTHMRNGQCHSALQVFNTMPRRSTVTYNAMISGYLSNGRFDLARE 109

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F +MP+++L +WN M++G   NK+   A  LF       E+  R    S  +M SG   
Sbjct: 110 MFDKMPERDLFTWNVMLSGYVRNKNLTDARGLF-------ERMPRRDVVSWNAMLSGYAQ 162

Query: 346 LHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
                +  ++  +  + +    N L+  Y + G I +AR +FE  K+  +VVSWN ++GG
Sbjct: 163 NGFIAEAREIFDEMPVKNSISWNGLLAAYVQNGRIEDARRLFES-KMDWDVVSWNCLMGG 221

Query: 406 CASHGFATEALELFKSMRSFKVLPTY--ITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
                   +   L  + R F  +P    +++ ++++  A  G +EE R+ F     E   
Sbjct: 222 F------VKKKRLVDARRVFDRIPVRDEVSWNTMITGYAQNGELEEARKLF-----EESP 270

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE 523
              +  + ++V    ++G +++A  +   MP E +   W A++        +++A+   E
Sbjct: 271 TQDVFTWTAMVSGYVQNGMVDEARSIFDKMP-EKNSVSWNAMIAGYVQCKRMDMAKELFE 329

Query: 524 AL 525
           A+
Sbjct: 330 AM 331



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 151/331 (45%), Gaps = 35/331 (10%)

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           +++ N   K    D + WN  ++ + + G    AL  F  MP+++ V++N+MI+G  +N 
Sbjct: 43  KQSKNESEKTTDSDIVNWNMAITTHMRNGQCHSALQVFNTMPRRSTVTYNAMISGYLSNG 102

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA 369
            ++ A ++F +M      P+R  F+  + +S  + + +L      +  +    DV   NA
Sbjct: 103 RFDLAREMFDKM------PERDLFTWNVMLSGYVRNKNL-TDARGLFERMPRRDVVSWNA 155

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           +++ YA+ G I EAR IF+EM  +KN +SWN ++     +G   +A  LF+S   + V  
Sbjct: 156 MLSGYAQNGFIAEAREIFDEMP-VKNSISWNGLLAAYVQNGRIEDARRLFESKMDWDV-- 212

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE-----HFASLVDIVGRHGRLE 484
                  V   C   G V++ R     +V+   +  RI       + +++    ++G LE
Sbjct: 213 -------VSWNCLMGGFVKKKR-----LVDARRVFDRIPVRDEVSWNTMITGYAQNGELE 260

Query: 485 DAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
           +A  L +  P + D   W A++    V N   +   A     K+  +NS  +  +   Y 
Sbjct: 261 EARKLFEESPTQ-DVFTWTAMVSG-YVQNG--MVDEARSIFDKMPEKNSVSWNAMIAGYV 316

Query: 545 DVGRWDDANEVRLLMKSNNIKK----PTGYS 571
              R D A E+   M   NI       TGY+
Sbjct: 317 QCKRMDMAKELFEAMPFRNISSWNTMITGYA 347


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 196/628 (31%), Positives = 328/628 (52%), Gaps = 91/628 (14%)

Query: 9   REMAKARKL----FDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           +   +A+KL       + Q +    N +I+ Y      G L  A ++FD +P+ +  +WN
Sbjct: 19  QNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKL---GNLAYAHHVFDHIPQPNLFSWN 75

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
           T++S Y+K G + +  ++FN MP R+ VSWN  ISG+   G  ++A+  +  M    + +
Sbjct: 76  TILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMN 135

Query: 125 LSALVSGLIQNGELDEAARVLVKCGS-RCDGGEDLVRAYNTLIVGYG------------- 170
           L+ +             + +L+ C   RC    DL R  N  I+ +G             
Sbjct: 136 LNRIT-----------FSTMLILCSKFRC---VDLGRQINGQILKFGFGSDVFVGSPLVD 181

Query: 171 ---QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
              + G + +A++ FD++P            +RN+V  N+MI    + G +  ++ +F  
Sbjct: 182 MYTKLGLIYDAKRYFDEMP------------ERNVVMCNTMITGLMRCGMIEESQRLFCG 229

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLF------------------------------- 256
           + ERD+ SW  MI+G +      EA ++F                               
Sbjct: 230 LKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEG 289

Query: 257 -------VKMPHPD-TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
                  ++  H D     +A+V  Y++  +++ A   FKRMPQKN++SW +M+ G   N
Sbjct: 290 KQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQN 349

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPIN 367
              E A+K+F +MQ  G +PD  T  S++S  + +  L  G Q H + +   +I  + ++
Sbjct: 350 GFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVS 409

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           NALIT+Y +CG+   +  +F EM + ++ VSW A++ G A  G A E + LF+ M +  +
Sbjct: 410 NALITLYGKCGSTENSHRLFTEMNI-RDEVSWTALLAGYAQFGKANETIGLFERMLAHGL 468

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
            P  +TFI VLSAC+ AGLVE+G Q+F+SM+ E+GI P ++H   ++D++GR GRLE+A 
Sbjct: 469 KPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEAR 528

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
           + I  MP  PD   W  LL +CRVH ++E+ + AA++L+ +EP+N   YVLL ++YA  G
Sbjct: 529 NFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKG 588

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           +WD   ++R  M+   ++K  GYSW+ +
Sbjct: 589 KWDKVAQLRRGMRDKRVRKEPGYSWIKY 616



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 216/491 (43%), Gaps = 94/491 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG---------FLEEA--- 48
           ++S Y K   +++ +++F+ MP RD VSWN+ ISGY ++ GS           L++A   
Sbjct: 77  ILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGY-ANYGSCSDAVRVYKLMLKDAAMN 135

Query: 49  --RYLFDIM----PERDCVTWNTVISG--------------------YAKTGEMEEALRL 82
             R  F  M     +  CV     I+G                    Y K G + +A R 
Sbjct: 136 LNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRY 195

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA- 141
           F+ MP RNVV  N MI+G ++ G +  +   F  +  RDS S + +++GL+QNG   EA 
Sbjct: 196 FDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREAL 255

Query: 142 ------------------ARVLVKCGSRCDGGE-DLVRAY-------------NTLIVGY 169
                               VL  CGS    GE   + AY             + L+  Y
Sbjct: 256 DMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMY 315

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM- 228
            +   ++ A  +F ++P            ++N++SW +M++ Y + G    A +IF +M 
Sbjct: 316 SKCRSIKSAETVFKRMP------------QKNVISWTAMLVGYGQNGFSEEAVKIFFEMQ 363

Query: 229 ---LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW----NAMVSGYAQIGNLE 281
              +E D F+  ++IS   ++  +EE +    +      +++    NA+++ Y + G+ E
Sbjct: 364 RNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTE 423

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            +   F  M  ++ VSW +++AG          I LF +M   G KPD  TF  +LS  S
Sbjct: 424 NSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACS 483

Query: 342 GIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
               +  G+Q  + + K   ++P V     +I +  R G + EAR     M    +VV W
Sbjct: 484 RAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGW 543

Query: 400 NAMIGGCASHG 410
             ++  C  HG
Sbjct: 544 ATLLSSCRVHG 554



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 62/297 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y K R +  A  +F  MPQ++V+SW  M+ GY     +GF EEA  +F  M     
Sbjct: 311 LVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQ---NGFSEEAVKIFFEMQRNGV 367

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW----NAMISGFLQNGDVANAIE 112
           E D  T  +VIS  A    +EE  +         ++S+    NA+I+ + + G   N+  
Sbjct: 368 EPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHR 427

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
            F  M  RD  S +AL++G                                     Y Q 
Sbjct: 428 LFTEMNIRDEVSWTALLAG-------------------------------------YAQF 450

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML-ER 231
           G+  E   LF+++  +  + +G        V++  ++   ++AG V    + FE M+ E 
Sbjct: 451 GKANETIGLFERMLAHGLKPDG--------VTFIGVLSACSRAGLVEKGLQYFESMIKEH 502

Query: 232 DTFSWNTMISGYIHVLD----MEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELA 283
                    +  I +L     +EEA N    MP HPD + W  ++S     G++E+ 
Sbjct: 503 GIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIG 559


>gi|15223809|ref|NP_177827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098688|sp|O49287.1|PP127_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial; Flags: Precursor
 gi|2829915|gb|AAC00623.1| Hypothetical protein [Arabidopsis thaliana]
 gi|332197804|gb|AEE35925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 695

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 211/644 (32%), Positives = 329/644 (51%), Gaps = 87/644 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y +  +M  AR LFDEMP R+  SWN MI GY++S   G    +   FD+MPERD 
Sbjct: 68  LLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKG---TSLRFFDMMPERDG 124

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP-G 119
            +WN V+SG+AK GE+  A RLFN+MP ++VV+ N+++ G++ NG    A+  F  +   
Sbjct: 125 YSWNVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELNFS 184

Query: 120 RDSASLSALVSGLIQNGELDEA----ARVLVKCGSRCDG--GEDLVRAY----------- 162
            D+ +L+ ++    +   L       A++L+  G  CD      LV  Y           
Sbjct: 185 ADAITLTTVLKACAELEALKCGKQIHAQILIG-GVECDSKMNSSLVNVYAKCGDLRMASY 243

Query: 163 -------------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
                        + LI GY   GRV E+R LFD+            +  R ++ WNSMI
Sbjct: 244 MLEQIREPDDHSLSALISGYANCGRVNESRGLFDR------------KSNRCVILWNSMI 291

Query: 210 MCYAKAGDVVSAREIFEQM---LERDTFSWNTMISGYI---------------------- 244
             Y      + A  +F +M      D+ +   +I+  I                      
Sbjct: 292 SGYIANNMKMEALVLFNEMRNETREDSRTLAAVINACIGLGFLETGKQMHCHACKFGLID 351

Query: 245 ------HVLDME-------EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
                  +LDM        EA  LF ++   DT+  N+M+  Y   G ++ A   F+R+ 
Sbjct: 352 DIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIE 411

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
            K+L+SWNSM  G   N      ++ F QM       D  + SS++S  + I  L LG Q
Sbjct: 412 NKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQ 471

Query: 352 IHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +    T   +  D  ++++LI +Y +CG +   R +F+ M +  + V WN+MI G A++G
Sbjct: 472 VFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTM-VKSDEVPWNSMISGYATNG 530

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
              EA++LFK M    + PT ITF+ VL+AC + GLVEEGR+ F+SM  ++G  P  EHF
Sbjct: 531 QGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEHF 590

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
           + +VD++ R G +E+A++L++ MPF+ D ++W ++L  C  +    + + AAE ++++EP
Sbjct: 591 SCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSILRGCVANGYKAMGKKAAEKIIELEP 650

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           ENS  YV L  ++A  G W+ +  VR LM+ NN+ K  G SW D
Sbjct: 651 ENSVAYVQLSAIFATSGDWESSALVRKLMRENNVTKNPGSSWTD 694



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/481 (27%), Positives = 233/481 (48%), Gaps = 55/481 (11%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           +  N ++  Y+++G+M  A  LF+ MP RN  SWN MI G++ +G+   ++ FFD MP R
Sbjct: 63  IVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPER 122

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  S + +VSG  + GEL  A R+           E  V   N+L+ GY   G  EEA +
Sbjct: 123 DGYSWNVVVSGFAKAGELSVARRLFNAM------PEKDVVTLNSLLHGYILNGYAEEALR 176

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSW 236
           LF ++            F  + ++  +++   A+   +   ++I  Q+L    E D+   
Sbjct: 177 LFKEL-----------NFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMN 225

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           +++++ Y    D+  AS +  ++  PD  + +A++SGYA  G +  +   F R   + ++
Sbjct: 226 SSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVI 285

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
            WNSMI+G   N     A+ LF +M+ E  + D  T +++++   G+  L  G Q+H   
Sbjct: 286 LWNSMISGYIANNMKMEALVLFNEMRNE-TREDSRTLAAVINACIGLGFLETGKQMHCHA 344

Query: 357 TK-TVIPDVPINNALITMYARCGAIVEARIIFEEMK-----LL----------------- 393
            K  +I D+ + + L+ MY++CG+ +EA  +F E++     LL                 
Sbjct: 345 CKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAK 404

Query: 394 --------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
                   K+++SWN+M  G + +G   E LE F  M    +    ++  SV+SACA   
Sbjct: 405 RVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASIS 464

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
            +E G Q F +     G++      +SL+D+  + G +E    +   M  + D+  W ++
Sbjct: 465 SLELGEQVF-ARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTM-VKSDEVPWNSM 522

Query: 506 L 506
           +
Sbjct: 523 I 523



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 161/320 (50%), Gaps = 36/320 (11%)

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           ++  N ++  Y+++G +  AR +F++M +R+ FSWNTMI GY++  +   +   F  MP 
Sbjct: 62  VIVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPE 121

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            D  +WN +VSG+A+ G L +A   F  MP+K++V+ NS++ G   N   E A++LF ++
Sbjct: 122 RDGYSWNVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFKEL 181

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAI 380
                  D  T +++L   + +  L  G QIH Q++   V  D  +N++L+ +YA+CG +
Sbjct: 182 NFSA---DAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDL 238

Query: 381 VEARIIFEEM------------------------------KLLKNVVSWNAMIGGCASHG 410
             A  + E++                              K  + V+ WN+MI G  ++ 
Sbjct: 239 RMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANN 298

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
              EAL LF  MR+ +      T  +V++AC   G +E G+Q       ++G+   I   
Sbjct: 299 MKMEALVLFNEMRN-ETREDSRTLAAVINACIGLGFLETGKQ-MHCHACKFGLIDDIVVA 356

Query: 471 ASLVDIVGRHGRLEDAMDLI 490
           ++L+D+  + G   +A  L 
Sbjct: 357 STLLDMYSKCGSPMEACKLF 376


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 210/682 (30%), Positives = 351/682 (51%), Gaps = 113/682 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y+K  ++  A K+FD MPQRD VSWN M+ GY    G G +  A+ LFD MP   C
Sbjct: 83  LIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGY---AGRGDIGVAQKLFDAMPGTGC 139

Query: 61  -------------------VTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNA 96
                               T+  V+   +   +    +++ + +  +     +VV+ +A
Sbjct: 140 GVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQI-HGLAVKMGFDCDVVTGSA 198

Query: 97  MISGF----LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELD-----EAARVLVK 147
           ++  +    +QN D+   +E F  M      +L      L  +   D         + +K
Sbjct: 199 LLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMK 258

Query: 148 CGSRCDGGEDL--------VRAYNTLIVGYGQRGRVEEARKLF----------DKIPVN- 188
           C +  D    L        +++YN +IVGY +  +  EA  +F          D++ ++ 
Sbjct: 259 CNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSG 318

Query: 189 ----CDRGEGNVR------------FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
               C   +G++              + NI   N+++  Y K G +V A  +FE+M+ RD
Sbjct: 319 AXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRD 378

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT----------WNAMVSG----- 273
             SWN +I+ +    + E+  +LFV M      PD  T          W A+  G     
Sbjct: 379 AVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHN 438

Query: 274 --------------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
                               Y++ G +E A     R+ ++ +VSWN++I+G    K  E 
Sbjct: 439 RIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEE 498

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALIT 372
           A K F +M   G  PD  T+++IL   + +V + LG QIH Q++ K +  D  I++ L+ 
Sbjct: 499 AQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVD 558

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY++CG + + ++IFE+    ++ V+WNAM+ G A HG   EAL++F+ M+   V P + 
Sbjct: 559 MYSKCGNMQDFQLIFEKAPN-RDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHA 617

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TF++VL AC H GLVE+G  +F SM++ YG++P++EH++ +VDI+GR G++  A++LI+G
Sbjct: 618 TFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEG 677

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
           MPFE D  +W  LL  C++H NVE+A+ AA +++++EPE+S  YVLL N+YA+ G W++ 
Sbjct: 678 MPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEV 737

Query: 553 NEVRLLMKSNNIKKPTGYSWVD 574
            ++R +M+ N +KK  G SW++
Sbjct: 738 TKLRKMMRFNGLKKEPGCSWIE 759



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 149/577 (25%), Positives = 256/577 (44%), Gaps = 75/577 (12%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           + A AR +  E      V+ N +I  YI     GF   A  +FD MP+RD V+WN ++ G
Sbjct: 62  KQAHARMILTEFKPTVFVT-NCLIQMYIKCSDLGF---AFKVFDGMPQRDTVSWNAMLFG 117

Query: 70  YAKTGEMEEALRLFNSMPARNV-------------------VSWNAMISGFLQNGDVANA 110
           YA  G++  A +LF++MP                        ++  ++       D    
Sbjct: 118 YAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGG 177

Query: 111 IEF--------FDRMPGRDSASLSALVSGLIQNGELD---EAARVLVKCGS--------- 150
           I+         FD      SA L       +QN +L    E  + + K G          
Sbjct: 178 IQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHA 237

Query: 151 -RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
            + D G D+V    TL +        + + +LF+ +P              N+ S+N++I
Sbjct: 238 LKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLP------------NHNLQSYNAII 285

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTM-ISGYIHVL-----DME--EASNLFVK-MP 260
           + YA++   + A  +F ++L++     + + +SG          D+E  +   L +K + 
Sbjct: 286 VGYARSDKGIEALGMF-RLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLC 344

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             +    NA++  Y + G L  A   F+ M  ++ VSWN++IA  E N + E  + LF+ 
Sbjct: 345 QSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVW 404

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGA 379
           M   G +PD  T+ S+L   +G   L+ GM+IH  + K+ +  D  +  ALI MY++CG 
Sbjct: 405 MLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGM 464

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           + +A  + + +   + VVSWNA+I G +    + EA + F  M    V P   T+ ++L 
Sbjct: 465 MEKAEKLHDRLA-EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILD 523

Query: 440 ACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
            CA+   VE G+Q H + +  E   +  I   ++LVD+  + G ++D   + +  P   D
Sbjct: 524 TCANLVTVELGKQIHAQIIKKELQSDAYIS--STLVDMYSKCGNMQDFQLIFEKAP-NRD 580

Query: 499 KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
              W A++     H    L + A +    ++ EN  P
Sbjct: 581 FVTWNAMVCGYAQHG---LGEEALKIFEYMQLENVKP 614



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 330 RHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFE 388
           + TFS I    S    L  G Q H +M+     P V + N LI MY +C  +  A  +F+
Sbjct: 42  KKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFD 101

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
            M   ++ VSWNAM+ G A  G    A +LF +M
Sbjct: 102 GMP-QRDTVSWNAMLFGYAGRGDIGVAQKLFDAM 134


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 219/705 (31%), Positives = 343/705 (48%), Gaps = 149/705 (21%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           A + F  +P+ +  S+N  +S   ++R +G L+ AR L D MP+R+ V+WNTVI+  A++
Sbjct: 62  ALRAFRSLPRPNAYSYNAALS---AARRAGDLDAARALLDEMPDRNVVSWNTVIAALARS 118

Query: 74  GEMEEALRLFNSM------PAR---------------------------------NVVSW 94
               EAL L+  M      P                                   N+   
Sbjct: 119 ERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVE 178

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR----------- 143
           NA++  + + G V +A+  FD M   +  S +A++ GL+Q G +D+A R           
Sbjct: 179 NALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVR 238

Query: 144 --------VLVKCGSRCDGGEDLVRAY----------------------NTLIVGYGQRG 173
                   VL  C   C    D+VRA+                      N+LI  Y +  
Sbjct: 239 VDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCM 298

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRF------------------------KRNIVSWNSMI 209
           +++EA K+FD +P N      N+                          + N V++++M+
Sbjct: 299 QMDEAVKVFDSLP-NISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNML 357

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTL 265
               KA DV+SAR +F+++      +WNT++SGY      ++   LF +M H    PD  
Sbjct: 358 ASCIKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRT 417

Query: 266 TWNAMVSG-----------------------------------YAQIGNLELALDFFKRM 290
           T   ++S                                    Y++ G + +A   F RM
Sbjct: 418 TLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRM 477

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
            ++++V WNSMI+G   +   E A   F QM+  G  P   +++S+++  + +  +  G 
Sbjct: 478 TERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGR 537

Query: 351 QIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           QIH Q+V      +V + +ALI MYA+CG + +AR+ F+ M + KN+V+WN MI G A +
Sbjct: 538 QIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCM-VTKNIVAWNEMIHGYAQN 596

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           GF  +A++LF+ M + +  P  +TFI+VL+ C+H+GLV+E    F SM + YGI P  EH
Sbjct: 597 GFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEAIAFFNSMESTYGITPLAEH 656

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           +  L+D +GR GRL +   LI  MP + D  VW  LL AC VH+N EL + AA+ L +++
Sbjct: 657 YTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLLAACAVHHNAELGECAAKHLFRLD 716

Query: 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           P+N +PYVLL N+YA +GR  DA+ VR LM S  + K  GYSW+D
Sbjct: 717 PKNPSPYVLLSNIYASLGRHGDASGVRALMSSRGVVKGRGYSWID 761



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 139/524 (26%), Positives = 245/524 (46%), Gaps = 87/524 (16%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           SG   +A   F  +P  +  ++N  +S   + G+++ A  L + MP RNVVSWN +I+  
Sbjct: 56  SGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAAL 115

Query: 102 LQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAAR---VLVKCG----- 149
            ++     A+E ++ M          +L++++S       LD+  R   + VK G     
Sbjct: 116 ARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENL 175

Query: 150 ----------SRCDGGEDLVR-----------AYNTLIVGYGQRGRVEEARKLFDKIPVN 188
                     ++C G ED VR           ++  ++ G  Q G V++A +LF ++   
Sbjct: 176 FVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARM--- 232

Query: 189 CDRGEGNVRFKRNIVS--WNSMIMCYAKAGDVVSARE--------IFEQMLERDTFSWNT 238
           C  G   VR     VS    S     A   DVV A          I  +    D    N+
Sbjct: 233 CRSG---VRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNS 289

Query: 239 MISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD------------- 285
           +I  Y   + M+EA  +F  +P+  T++WN +++G+ Q G+   AL+             
Sbjct: 290 LIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPN 349

Query: 286 ----------------------FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
                                  F ++ + ++ +WN++++G    + ++  ++LF +MQ 
Sbjct: 350 EVTYSNMLASCIKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQH 409

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVE 382
           +  +PDR T + ILS  S +  L LG Q+H    + ++  D+ + + L+ MY++CG I  
Sbjct: 410 QNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGI 469

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           ARIIF  M   ++VV WN+MI G A H    EA + FK MR   ++PT  ++ S++++CA
Sbjct: 470 ARIIFNRMT-ERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCA 528

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
               V +GRQ    +V + G +  +   ++L+D+  + G ++DA
Sbjct: 529 RLSSVPQGRQIHAQIVKD-GYDQNVYVGSALIDMYAKCGNMDDA 571



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 158/353 (44%), Gaps = 16/353 (4%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
           L  DTF  N ++  Y       +A   F  +P P+  ++NA +S   + G+L+ A     
Sbjct: 39  LGADTFLINRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAARALLD 98

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            MP +N+VSWN++IA    ++    A++L+  M  EG  P   T +S+LS    +  L  
Sbjct: 99  EMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAALDD 158

Query: 349 GMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G + H +  K  + + + + NAL+ MY +CG + +A  +F+ M    N VS+ AM+GG  
Sbjct: 159 GRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMA-SPNEVSFTAMMGGLV 217

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA-----GLVEEGR--QHFKSMVNE 460
             G   +AL LF  M    V    +   SVL +CA A      +V   R  Q   +++  
Sbjct: 218 QAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVR 277

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
            G         SL+D+  +  ++++A+ +   +P       W  L+              
Sbjct: 278 KGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLP-NISTVSWNILITG---FGQAGSYAK 333

Query: 521 AAEALMKVEPENSTPYVLLY-NMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
           A E L  +E   S P  + Y NM A   +  D    R +   + I +P+  +W
Sbjct: 334 ALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMF--DKISRPSVTTW 384


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 212/649 (32%), Positives = 328/649 (50%), Gaps = 100/649 (15%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y+  R+ A+  ++  E    D+V  N MIS Y+     G L +AR LFD MPER+ V+W+
Sbjct: 66  YLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQW---GNLVQARLLFDEMPERNEVSWS 122

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---- 120
            +ISG  K G +EE++  F   P +NVVSW A ISGF++NG    A++ F R+       
Sbjct: 123 ALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRP 182

Query: 121 DSASLSALVSGLIQNGELDEAARVL---VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           +  + +++V    + G+      +L   VK G      E  +   N+LI    + G ++ 
Sbjct: 183 NDVTFTSVVRACGELGDFGLGMSILGLVVKAGF-----EHYLSVSNSLITLSLRMGEIDL 237

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           AR++FD++             KR++VSW +++  Y + GD+  AR IF++M ER+  SW+
Sbjct: 238 ARRVFDRME------------KRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWS 285

Query: 238 TMISGYIHVLDMEEASNLFVKMPH------------------------------------ 261
            MI+ Y      EEA  LF KM                                      
Sbjct: 286 AMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKI 345

Query: 262 ---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM----------------- 301
               D    ++++  Y + G  +     F  + +KN+V WNSM                 
Sbjct: 346 GIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELF 405

Query: 302 --------------IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
                         IAG   N+  E  +++F  + V G+ P++ TFSS+L   + I  L 
Sbjct: 406 ELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLD 465

Query: 348 LGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
            GM +H  + K  I  D+ +  AL  MYA+CG I  ++ +FE M   KN +SW  MI G 
Sbjct: 466 KGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMP-EKNEISWTVMIQGL 524

Query: 407 ASHGFATEALELFKSM-RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
           A  GFA E+L LF+ M R+ +V P  +  +SVL AC+H GLV++G  +F SM   YGI+P
Sbjct: 525 AESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKP 584

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
           + +H+  +VD++ R GRL +A + I+ +PF+P+   W ALL  C+ + + ++A+  A+ L
Sbjct: 585 KGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKL 644

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            ++   NS  YVLL N+YA  GRW D + +R LM+   +KK  G SWV+
Sbjct: 645 WQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVE 693



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 158/333 (47%), Gaps = 35/333 (10%)

Query: 208 MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW 267
           +++ Y          +I ++    D    N MIS Y+   ++ +A  LF +MP  + ++W
Sbjct: 62  LLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSW 121

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           +A++SG  + G +E ++ +F+R P +N+VSW + I+G   N     A+KLF ++   G +
Sbjct: 122 SALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVR 181

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITM------------- 373
           P+  TF+S++     + D  LGM I  +V K      + ++N+LIT+             
Sbjct: 182 PNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRV 241

Query: 374 ------------------YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
                             Y   G + EAR IF+EM   +N +SW+AMI   +  G+A EA
Sbjct: 242 FDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMP-ERNEISWSAMIARYSQSGYAEEA 300

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L+LF  M      P    F   LSA A    +  G  +    V + GI+  +   +SL+D
Sbjct: 301 LKLFSKMVQEGFKPNISCFACTLSALASLRALSAG-INIHGHVTKIGIDKDVFIGSSLID 359

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           +  + G+ +D   L+  +  E +   W +++G 
Sbjct: 360 LYCKCGKPDDGR-LVFDLILEKNVVCWNSMVGG 391


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 177/491 (36%), Positives = 276/491 (56%), Gaps = 52/491 (10%)

Query: 86  MPARNVVSWNAMISGFLQN-GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
           M  +  V+WN++++G  +  G +  A E F ++P  D+ S                    
Sbjct: 1   MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVS-------------------- 40

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
                            YNT++  Y +   +E A+  F+ +P+            ++  S
Sbjct: 41  -----------------YNTMLSCYVRNSNMERAQAFFEDMPI------------KDTPS 71

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDT 264
           WN+MI  +A+   +  AR++F  M  ++  +WN MISGY+   D++ A  LF K P    
Sbjct: 72  WNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSV 131

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
           + W AM++GY ++G + LA   F++MP+KNLV+WN+MIAG   N   E  +KLF  M   
Sbjct: 132 VAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGF 191

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEA 383
           G +P+  T SS L   S +  L LG Q+HQ+V K+ +  D     +LI+MY +CG + + 
Sbjct: 192 GIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDG 251

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
             +F ++   ++VV+WNAMI G A HG   +AL LF  M    + P +ITF++VL AC H
Sbjct: 252 WKLFVQVPR-RDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNH 310

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           AG  + G ++F SM  +YG+  + +H+  +VD++GR G+L +A+DLI+ MPF+P  AV+G
Sbjct: 311 AGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFG 370

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
            LLGACR+H N E+A+ A++ L+ ++P ++T YV L N+YA   RWD    VR  MKS  
Sbjct: 371 TLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCK 430

Query: 564 IKKPTGYSWVD 574
           + K  GYSW++
Sbjct: 431 VVKTPGYSWIE 441



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 129/451 (28%), Positives = 220/451 (48%), Gaps = 38/451 (8%)

Query: 21  MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEAL 80
           M  +  V+WN +++G    RG   L+EA+ LF  +PE D V++NT++S Y +   ME A 
Sbjct: 1   MTLKTTVTWNSVLAGMSKKRGK--LKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQ 58

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
             F  MP ++  SWN MI+GF QN  +  A + F  MP ++  + +A++SG ++ G+LD 
Sbjct: 59  AFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDS 118

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A ++  K   +       V A+  +I GY + GR+  A +LF+K+P            ++
Sbjct: 119 ALKLFEKAPFKS------VVAWTAMITGYMKLGRIGLAERLFEKMP------------EK 160

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQML------ERDTFSWNTMISGYIHVLDM-EEAS 253
           N+V+WN+MI  Y +        ++F  M+         T S   +    +  L +  +  
Sbjct: 161 NLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVH 220

Query: 254 NLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
            L  K P   DT    +++S Y + G LE     F ++P++++V+WN+MI+G   + + +
Sbjct: 221 QLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGK 280

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPDVPIN-NA 369
            A+ LF +M  +G KPD  TF ++L     +G  DL +    H M     +   P +   
Sbjct: 281 KALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKY-FHSMAKDYGLVAKPDHYTC 339

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           ++ +  R G +VEA  + E+M    +   +  ++G C  H   TE  E F S +   + P
Sbjct: 340 MVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHK-NTEMAE-FASQKLLNLDP 397

Query: 430 T----YITFISVLSACAHAGLVEEGRQHFKS 456
                Y+   +V +A      V   R+  KS
Sbjct: 398 ASATGYVQLANVYAATKRWDHVARVRKSMKS 428


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 213/644 (33%), Positives = 331/644 (51%), Gaps = 110/644 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y K      ARKLFDEMP R   SWN ++S Y S RG   ++     FD +P+RD 
Sbjct: 55  LMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAY-SKRGD--MDSTCEFFDQLPQRDS 111

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM------PAR------------------------- 89
           V+W T+I GY   G+  +A+R+   M      P +                         
Sbjct: 112 VSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSF 171

Query: 90  --------NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                   NV   N++++ + + GD   A   FDRM  RD +S +A+++  +Q G++D A
Sbjct: 172 IVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLA 231

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI---------------- 185
                +   R     D+V  +N++I G+ QRG    A  +F K+                
Sbjct: 232 MAQFEQMAER-----DIV-TWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASV 285

Query: 186 ---PVNCDRGEGNVRFKRNIVS---------WNSMIMCYAKAGDVVSAREIFEQMLERD- 232
                N ++     +   +IV+          N++I  Y++ G V +AR + EQ   +D 
Sbjct: 286 LSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345

Query: 233 -TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
               +  ++ GYI + DM +A N+FV +   D + W AM+ GY Q G+   A++ F+   
Sbjct: 346 KIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFR--- 402

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
                   SM+ G                    G++P+ +T +++LS++S +  L  G Q
Sbjct: 403 --------SMVGG--------------------GQRPNSYTLAAMLSVASSLASLSHGKQ 434

Query: 352 IHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           IH    K+  I  V ++NALITMYA+ G I  A   F+ ++  ++ VSW +MI   A HG
Sbjct: 435 IHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHG 494

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
            A EALELF++M    + P +IT++ V SAC HAGLV +GRQ+F  M +   I P + H+
Sbjct: 495 HAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHY 554

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
           A +VD+ GR G L++A + I+ MP EPD   WG+LL ACRVH N++L +VAAE L+ +EP
Sbjct: 555 ACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEP 614

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           ENS  Y  L N+Y+  G+W++A ++R  MK   +KK  G+SW++
Sbjct: 615 ENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIE 658


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 199/582 (34%), Positives = 312/582 (53%), Gaps = 58/582 (9%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y K R ++ AR++FD     +V S+N +IS Y       ++E A  LFD MP+ D V++N
Sbjct: 53  YSKCRRLSAARRVFDHTHDCNVFSFNTLISAYAKE---SYVEVAHQLFDEMPQPDSVSYN 109

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
           T+I+ YA+ G+ + A +LF  M                          F D     D  +
Sbjct: 110 TLIAAYARRGDTQPAFQLFLEMRE-----------------------AFLD----MDGFT 142

Query: 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK 184
           LS +++    N  L      L    S   G +  V   N LI  Y + G ++EAR++F  
Sbjct: 143 LSGIITACGINVGLIRQLHAL----SVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHW 198

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMI 240
           +  +           R+ VSWNSM++ Y +  +   A E++ +M  R    D F+  +++
Sbjct: 199 LSED-----------RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 241 SGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLEL-ALDFFKRMPQKNL 295
           + + +V D+        K+     H ++   + ++  Y++ G   L     F  +   +L
Sbjct: 248 TAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDL 307

Query: 296 VSWNSMIAGCETNKDY-EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           V WN+MI+G    +D  + A++ F Q+QV G +PD  +   ++S  S +     G Q+H 
Sbjct: 308 VLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHG 367

Query: 355 MVTKTVIPD--VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
           +  K  IP   + +NNALI MY++CG + +A+ +F+ M    N VS+N+MI G A HG  
Sbjct: 368 LALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQHGMG 426

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
            ++L LF+ M      PT ITFISVL+ACAH G VE+G+ +F  M  ++GIEP   HF+ 
Sbjct: 427 FQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSC 486

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           ++D++GR G+L +A  LI+ +PF+P    W ALLGACR+H NVELA  AA  L++++P N
Sbjct: 487 MIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLN 546

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + PYV+L N+Y+D GR  DA  VR LM+   +KK  G SW++
Sbjct: 547 AAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIE 588



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 124/468 (26%), Positives = 208/468 (44%), Gaps = 78/468 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG------FLEEARYLFDI 54
           +IS Y K   +  A +LFDEMPQ D VS+N +I+ Y + RG        FLE      D+
Sbjct: 80  LISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAY-ARRGDTQPAFQLFLEMREAFLDM 138

Query: 55  ---------------------MPERDCVT--------WNTVISGYAKTGEMEEALRLFNS 85
                                +     VT         N +I+ Y+K G ++EA R+F+ 
Sbjct: 139 DGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHW 198

Query: 86  MPA-RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGL--IQN--G 136
           +   R+ VSWN+M+  ++Q+ + + A+E +  M  R    D  +L+++++    +Q+  G
Sbjct: 199 LSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLG 258

Query: 137 ELDEAARVLVKCGSRCDG--GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
            L   A+ L+K G   +   G  L+  Y+         G + + RK+FD+I         
Sbjct: 259 GLQFHAK-LIKSGYHQNSHVGSGLIDLYSKC------GGCMLDCRKVFDEIS-------- 303

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQML----ERDTFSWNTMISGYIHVLDM 249
                 ++V WN+MI  Y+   D+   A E F Q+       D  S   +IS   ++   
Sbjct: 304 ----NPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSP 359

Query: 250 EEASN-----LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
            +        L + +P       NA+++ Y++ GNL  A   F  MP+ N VS+NSMIAG
Sbjct: 360 SQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAG 419

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIP 362
              +     ++ LF +M   G  P   TF S+L+  +    +  G     M+ +   + P
Sbjct: 420 YAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEP 479

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +    + +I +  R G + EA  + E +        W+A++G C  HG
Sbjct: 480 EAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHG 527



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 161/365 (44%), Gaps = 53/365 (14%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N  ++ Y+K   + +AR +F+   + + FS+NT+IS                        
Sbjct: 47  NHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISA----------------------- 83

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
                   YA+   +E+A   F  MPQ + VS+N++IA      D + A +LF++M+   
Sbjct: 84  --------YAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAF 135

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEAR 384
              D  T S I++     +++ L  Q+H +   T +   V + NALIT Y++ G + EAR
Sbjct: 136 LDMDGFTLSGIITACG--INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEAR 193

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            IF  +   ++ VSWN+M+     H   ++ALEL+  M    ++    T  SVL+A  + 
Sbjct: 194 RIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNV 253

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR-LEDAMDLIKGMPFEPDKAVWG 503
             +  G Q F + + + G        + L+D+  + G  + D   +   +   PD  +W 
Sbjct: 254 QDLLGGLQ-FHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEIS-NPDLVLWN 311

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
            ++    ++   +L+  A E   +++     P              DD + V ++   +N
Sbjct: 312 TMISGYSLYE--DLSDEALECFRQLQVVGHRP--------------DDCSLVCVISACSN 355

Query: 564 IKKPT 568
           +  P+
Sbjct: 356 MSSPS 360


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 189/522 (36%), Positives = 298/522 (57%), Gaps = 30/522 (5%)

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---- 120
           +++  Y + G + EA R+F+ MP R+V +WNAM+SG  +N   A+A+    RM G     
Sbjct: 107 SLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAG 166

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D+ +LS+++   +  G+   A  + V        GE  V   N LI  YG+ G + EA  
Sbjct: 167 DAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFV--CNALIDVYGKLGMLTEAHW 224

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSW 236
           +F  + +            R++V+WNS+I    + G V +A E+F  M+E     D  + 
Sbjct: 225 VFGGMAL------------RDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTL 272

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
            ++ S      D   A ++   +        D +  NAMV  YA++  ++ A   F  +P
Sbjct: 273 VSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLP 332

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ-VEGEKPDRHTFSSILSMSSGIVDLHLGM 350
            +++VSWN++I G   N     AI+++  M   EG KP + TF S+L   S +  L  GM
Sbjct: 333 DRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGM 392

Query: 351 QIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           ++H +  KT +  DV +   LI +YA+CG +VEA  +FE M   ++   WNA+I G   H
Sbjct: 393 RMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPR-RSTGPWNAIIAGLGVH 451

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G   +AL LF  M+  ++ P ++TF+S+L+AC+HAGLV++GR  F  M   YGI P  +H
Sbjct: 452 GHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKH 511

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           +  +VD++GR G+L++A + I+ MP +PD AVWGALLGACR+H NVE+ +VA++ L +++
Sbjct: 512 YTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELD 571

Query: 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           PEN   YVL+ NMYA +G+WD  + VR L++  N++K  G+S
Sbjct: 572 PENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWS 613



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 206/470 (43%), Gaps = 82/470 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSR-------------GSGFLEE 47
           ++  Y++   +A+A ++FDEMP+RDV +WN M+SG   +              G G   +
Sbjct: 108 LVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGD 167

Query: 48  ARYLFDIMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
           A  L  ++P                         +    N +I  Y K G + EA  +F 
Sbjct: 168 AVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFG 227

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            M  R++V+WN++IS   Q G VA A+E F  M       D  +L +L S + Q G  DE
Sbjct: 228 GMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCG--DE 285

Query: 141 AARVLVKCGSRCDGGE--DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
                V C  R  G +  D++ A N ++  Y +  +++ A+K+FD +P            
Sbjct: 286 LGAKSVHCYVRRRGWDVGDII-AGNAMVDMYAKMSKIDAAQKVFDNLP------------ 332

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-----SWNTMISGY---------- 243
            R++VSWN++I  Y + G    A  I+  M   +       ++ +++  Y          
Sbjct: 333 DRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGM 392

Query: 244 -IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
            +H L ++   NL       D      ++  YA+ G L  A+  F+ MP+++   WN++I
Sbjct: 393 RMHALSIKTGLNL-------DVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAII 445

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTV 360
           AG   +     A+ LF QMQ E  KPD  TF S+L+  S  G+VD              +
Sbjct: 446 AGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGI 505

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +P       ++ M  R G + EA    + M +  +   W A++G C  HG
Sbjct: 506 VPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHG 555



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 211/445 (47%), Gaps = 33/445 (7%)

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
           L++      +A  L  C  R       V A  +L+  Y + GRV EA ++FD++P     
Sbjct: 75  LVRAAPGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMP----- 129

Query: 192 GEGNVRFKRNIVSWNSMI--MCY-AKAGDVVS--AREIFEQMLERDTFSWNTMISGYIHV 246
                  +R++ +WN+M+  +C   +A D V+   R + E  +  D  + ++++   + +
Sbjct: 130 -------ERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEG-VAGDAVTLSSVLPMCVVL 181

Query: 247 LDMEEASNLFV-KMPH---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
            D   A  + V  + H    +    NA++  Y ++G L  A   F  M  ++LV+WNS+I
Sbjct: 182 GDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSII 241

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV-- 360
           +  E       A++LF  M   G  PD  T  S+ S  +   D      +H  V +    
Sbjct: 242 SANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWD 301

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
           + D+   NA++ MYA+   I  A+ +F+ +   ++VVSWN +I G   +G A EA+ ++ 
Sbjct: 302 VGDIIAGNAMVDMYAKMSKIDAAQKVFDNLP-DRDVVSWNTLITGYMQNGLANEAIRIYN 360

Query: 421 SMRSFKVL-PTYITFISVLSACAHAGLVEEG-RQHFKSMVNEYGIEPRIEHFASLVDIVG 478
            M + + L P   TF+SVL A ++ G +++G R H  S+  + G+   +     L+D+  
Sbjct: 361 DMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSI--KTGLNLDVYVTTCLIDLYA 418

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN--VELAQVAAEALMKVEPENSTPY 536
           + G+L +AM L + MP       W A++    VH +    L+  +     +++P++ T +
Sbjct: 419 KCGKLVEAMFLFEHMP-RRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVT-F 476

Query: 537 VLLYNMYADVGRWDDANEVRLLMKS 561
           V L    +  G  D       LM++
Sbjct: 477 VSLLAACSHAGLVDQGRSFFDLMQT 501



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 152/370 (41%), Gaps = 78/370 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I  Y K   + +A  +F  M  RD+V+WN +IS   ++   G +  A  LF  M E   
Sbjct: 209 LIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIIS---ANEQGGKVAAAVELFHGMMESGV 265

Query: 59  --------------------------------------DCVTWNTVISGYAKTGEMEEAL 80
                                                 D +  N ++  YAK  +++ A 
Sbjct: 266 CPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQ 325

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-----SASLSALVSGLIQN 135
           ++F+++P R+VVSWN +I+G++QNG    AI  ++ M   +       +  +++      
Sbjct: 326 KVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYL 385

Query: 136 GELDEAAR---VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           G L +  R   + +K G   D     V     LI  Y + G++ EA  LF+ +P      
Sbjct: 386 GGLQQGMRMHALSIKTGLNLD-----VYVTTCLIDLYAKCGKLVEAMFLFEHMP------ 434

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLD 248
                 +R+   WN++I      G    A  +F QM    ++ D  ++ ++++   H   
Sbjct: 435 ------RRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGL 488

Query: 249 MEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMI 302
           +++  + F  M       P    +  MV    + G L+ A +F + MP K +   W +++
Sbjct: 489 VDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALL 548

Query: 303 AGCETNKDYE 312
             C  + + E
Sbjct: 549 GACRIHGNVE 558



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 130/333 (39%), Gaps = 80/333 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           M+  Y K  ++  A+K+FD +P RDVVSWN +I+GY+    +G   EA  +++ M     
Sbjct: 311 MVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQ---NGLANEAIRIYNDMHNHEG 367

Query: 59  --------------------------------------DCVTWNTVISGYAKTGEMEEAL 80
                                                 D      +I  YAK G++ EA+
Sbjct: 368 LKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAM 427

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNG 136
            LF  MP R+   WNA+I+G   +G  A A+  F +M       D  +  +L++     G
Sbjct: 428 FLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAG 487

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD------ 190
            +D+  R          G   + + Y  ++   G+ G+++EA +    +P+  D      
Sbjct: 488 LVDQ-GRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGA 546

Query: 191 -----RGEGNVRFKR------------NIVSWNSMIMCYAKAGD---VVSAREIFEQMLE 230
                R  GNV   +            N+  +  M   YAK G    V + R +  +   
Sbjct: 547 LLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNL 606

Query: 231 RDTFSWNTM-ISGYIHVLDMEEASNLFVKMPHP 262
           + T  W++M + G + V      +      PHP
Sbjct: 607 QKTPGWSSMEVKGSVSVFYSGTQTE-----PHP 634


>gi|302780000|ref|XP_002971775.1| hypothetical protein SELMODRAFT_60139 [Selaginella moellendorffii]
 gi|300160907|gb|EFJ27524.1| hypothetical protein SELMODRAFT_60139 [Selaginella moellendorffii]
          Length = 516

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 191/563 (33%), Positives = 301/563 (53%), Gaps = 56/563 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+  ++   + +++ LFD MP+RD ++WN ++S Y      G LEEA  LF +MPERD 
Sbjct: 5   IITACIQNNAVGESKGLFDRMPERDTITWNSLLSAYAQ---RGHLEEANDLFYMMPERDY 61

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++WNT+I   A +  ++ A  +++ MP  + VSW+ M++ +   G +      FD MP R
Sbjct: 62  MSWNTLIQASASSN-LDLAQEIYHYMPEHSHVSWSVMLTAYANFGHLDKTRSLFDSMPER 120

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A+ +G  QNG L E+   +       D     V ++  +I  YG+     +AR+
Sbjct: 121 NLISWTAMAAGYAQNGYLQESYSEIFSTMPERD-----VFSWTAMITVYGEFDDPHKARR 175

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIM-CYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            FD +P             +N+VSW++M    YA  G + SA+  FE+M  RD  SWN++
Sbjct: 176 CFDLMP------------HKNVVSWSAMFQAAYAHNGHLESAKIAFERMPSRDVVSWNSI 223

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           I+ +     +EEA +LF  MP P+T  WN M+  +AQ G+L+LA+D F+           
Sbjct: 224 IAFFSQKGKLEEAKDLFHLMPEPNTAAWNVMIQAHAQSGHLDLAMDVFRL---------- 273

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ-IHQMVTK 358
                                M + G  PD  T+ +I    S I +   G   I  +V  
Sbjct: 274 ---------------------MDLHGVSPDSVTYIAIFDACSRIANAEEGSAFIASIVHP 312

Query: 359 TVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
            ++ D V + NA +TMY R G    A  +F++M  +++ VSWNAM+   A +G    AL+
Sbjct: 313 GILQDSVAVGNAALTMYGRSGLAAGAWSVFQQMP-VRDSVSWNAMLTAFARNGHGEAALD 371

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           +F +M    ++P  ITF++VLSAC+HAGL+   R +F S+  +YG+ P  +H+  L D++
Sbjct: 372 VFLAMELEGLVPDIITFVNVLSACSHAGLLHRARGYFHSISCDYGLTPIYDHYVCLTDLL 431

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
            R GRL +A +L+  MPFEP+   W ALLGACR H +V     AA   ++   +  +PYV
Sbjct: 432 ARSGRLVEAEELVNSMPFEPNYEAWMALLGACRSHGDVRRGNRAAGFFVQAGVDAESPYV 491

Query: 538 LLYNMYADVGRWDDANEVRLLMK 560
           LL ++YA+ G  DD   +R  M+
Sbjct: 492 LLSHLYAEAGSKDDVLVIRKAMR 514


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 215/633 (33%), Positives = 333/633 (52%), Gaps = 83/633 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K   +  AR +FD M +RD+ SW VMI G ++  G G  +EA  LF  M    C
Sbjct: 361 LVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGG-LAQHGRG--QEAFSLFLQMQRNGC 417

Query: 61  V---------------------TW--------------------NTVISGYAKTGEMEEA 79
           +                      W                    N +I  YAK G +++A
Sbjct: 418 LPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDA 477

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQN 135
             +F+ M  R+V+SWNAM+ G  QNG    A   F +M       DS +  +L++     
Sbjct: 478 RLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGST 537

Query: 136 GELD---EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
             L+   E  +  V+ G   D      R  +  I  Y + G +++AR LFDK+ V     
Sbjct: 538 DALEWVNEVHKHAVETGLISD-----FRVGSAFIHMYIRCGSIDDARLLFDKLSV----- 587

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL--DME 250
                  R++ +WN+MI   A+      A  +F QM +R+ F  +   + +I++L  +++
Sbjct: 588 -------RHVTTWNAMIGGAAQQRCGREALSLFLQM-QREGFIPDA--TTFINILSANVD 637

Query: 251 EASNLFVKMPHP--------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
           E +  +VK  H         D    NA+V  Y++ GN++ A   F  M ++N+ +W  MI
Sbjct: 638 EEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMI 697

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVI 361
            G   +     A   F+QM  EG  PD  T+ SILS  +    L    ++H   V+  ++
Sbjct: 698 GGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLV 757

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
            D+ + NAL+ MYA+CG+I +AR +F++M + ++V SW  MIGG A HG   EAL+ F  
Sbjct: 758 SDLRVGNALVHMYAKCGSIDDARSVFDDM-VERDVFSWTVMIGGLAQHGRGLEALDFFVK 816

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M+S    P   ++++VL+AC+HAGLV+EGR+ F SM  +YGIEP +EH+  +VD++GR G
Sbjct: 817 MKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAG 876

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
            LE+A   I  MP EPD A WGALLGAC  + N+E+A+ AA+  +K++P++++ YVLL N
Sbjct: 877 LLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSN 936

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +YA  G+W+    VR +M+   I+K  G SW++
Sbjct: 937 IYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIE 969



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 166/627 (26%), Positives = 281/627 (44%), Gaps = 84/627 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +++ YVK   +  A+ +FD+M +R+V+SW VMI G ++  G G  +EA +LF  M     
Sbjct: 260 LVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGG-LAHYGRG--QEAFHLFLQMQREGF 316

Query: 59  -------------------------------------DCVTWNTVISGYAKTGEMEEALR 81
                                                D    N ++  YAK+G +++A  
Sbjct: 317 IPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARV 376

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-----SASLSALVSGLIQNG 136
           +F+ M  R++ SW  MI G  Q+G    A   F +M         +  LS L +  I + 
Sbjct: 377 VFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIAST 436

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
              E  +V+ K         DL R  N LI  Y + G +++AR +FD +   CD      
Sbjct: 437 SALEWVKVVHKHAEEAGFISDL-RIGNALIHMYAKCGSIDDARLVFDGM---CD------ 486

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF 256
              R+++SWN+M+   A+ G    A  +F QM +      +T    Y+ +L+   +++  
Sbjct: 487 ---RDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTT---YLSLLNTHGSTDAL 540

Query: 257 --VKMPH---------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
             V   H          D    +A +  Y + G+++ A   F ++  +++ +WN+MI G 
Sbjct: 541 EWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGA 600

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP 365
              +    A+ LF+QMQ EG  PD  TF +ILS +     L    ++H   T   + D+ 
Sbjct: 601 AQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLR 660

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           + NAL+  Y++CG +  A+ +F++M + +NV +W  MIGG A HG   +A   F  M   
Sbjct: 661 VGNALVHTYSKCGNVKYAKQVFDDM-VERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLRE 719

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            ++P   T++S+LSACA  G +E  ++     V+  G+   +    +LV +  + G ++D
Sbjct: 720 GIVPDATTYVSILSACASTGALEWVKEVHNHAVSA-GLVSDLRVGNALVHMYAKCGSIDD 778

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP----YVLLYN 541
           A  +   M  E D   W  ++G    H        A +  +K++ E   P    YV +  
Sbjct: 779 ARSVFDDM-VERDVFSWTVMIGGLAQHGR---GLEALDFFVKMKSEGFKPNGYSYVAVLT 834

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPT 568
             +  G  D+     L M  +   +PT
Sbjct: 835 ACSHAGLVDEGRRQFLSMTQDYGIEPT 861



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 169/653 (25%), Positives = 283/653 (43%), Gaps = 135/653 (20%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE------- 57
           Y++   +  AR++FD++ ++++  W  MI GY      G  E+A  ++D M +       
Sbjct: 163 YIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAE---YGHAEDAMRVYDKMRQECGQPNE 219

Query: 58  -------RDC-----VTW--------------------NTVISGYAKTGEMEEALRLFNS 85
                  + C     + W                      +++ Y K G +E+A  +F+ 
Sbjct: 220 ITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDK 279

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD-- 139
           M  RNV+SW  MI G    G    A   F +M       +S +  ++++     G L+  
Sbjct: 280 MVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWV 339

Query: 140 -EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
            E     V  G   D     +R  N L+  Y + G +++AR +FD +             
Sbjct: 340 KEVHSHAVNAGLALD-----LRVGNALVHMYAKSGSIDDARVVFDGMT------------ 382

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL--- 255
           +R+I SW  MI   A+ G    A  +F QM +R+    N  ++ Y+ +L+    ++    
Sbjct: 383 ERDIFSWTVMIGGLAQHGRGQEAFSLFLQM-QRNGCLPN--LTTYLSILNASAIASTSAL 439

Query: 256 -FVKMPH---------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
            +VK+ H          D    NA++  YA+ G+++ A   F  M  ++++SWN+M+ G 
Sbjct: 440 EWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGL 499

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDV 364
             N     A  +F+QMQ EG  PD  T+ S+L+       L    ++H+   +T +I D 
Sbjct: 500 AQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDF 559

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            + +A I MY RCG+I +AR++F+++  +++V +WNAMIGG A      EAL LF  M+ 
Sbjct: 560 RVGSAFIHMYIRCGSIDDARLLFDKLS-VRHVTTWNAMIGGAAQQRCGREALSLFLQMQR 618

Query: 425 FKVLPTYITFISVLSA----------------CAHAGLVEE-------------GRQHFK 455
              +P   TFI++LSA                   AGLV+              G   + 
Sbjct: 619 EGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYA 678

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGAC--- 509
             V +  +E  +  +  ++  + +HG   DA      M  E   PD   + ++L AC   
Sbjct: 679 KQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACAST 738

Query: 510 -------RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
                   VHN+     V+A  +  +   N+     L +MYA  G  DDA  V
Sbjct: 739 GALEWVKEVHNHA----VSAGLVSDLRVGNA-----LVHMYAKCGSIDDARSV 782



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 186/404 (46%), Gaps = 52/404 (12%)

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK 258
           ++N+   N ++  Y + G +  AR++F+++L+++ + W TMI GY      E+A  ++ K
Sbjct: 150 EQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDK 209

Query: 259 MPH-------------------PDTLTW--------------------NAMVSGYAQIGN 279
           M                     P  L W                     A+V+ Y + G+
Sbjct: 210 MRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGS 269

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           +E A   F +M ++N++SW  MI G       + A  LF+QMQ EG  P+ +T+ SIL+ 
Sbjct: 270 IEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNA 329

Query: 340 SSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
           ++    L    ++H   V   +  D+ + NAL+ MYA+ G+I +AR++F+ M   +++ S
Sbjct: 330 NASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMT-ERDIFS 388

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE-EGRQHFKSM 457
           W  MIGG A HG   EA  LF  M+    LP   T++S+L+A A A     E  +     
Sbjct: 389 WTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKH 448

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG-----ACRVH 512
             E G    +    +L+ +  + G ++DA  +  GM  + D   W A++G      C   
Sbjct: 449 AEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMC-DRDVISWNAMMGGLAQNGCGHE 507

Query: 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
                 Q+  E L+     +ST Y+ L N +      +  NEV 
Sbjct: 508 AFTVFLQMQQEGLVP----DSTTYLSLLNTHGSTDALEWVNEVH 547



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 155/332 (46%), Gaps = 42/332 (12%)

Query: 214 KAGDVVSARE----IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA 269
           K  D++ A++    I +  +E++ +  N ++  YI    ++ A  +F K+   +   W  
Sbjct: 130 KQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTT 189

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           M+ GYA+ G+ E A+  + +M Q                               E  +P+
Sbjct: 190 MIGGYAEYGHAEDAMRVYDKMRQ-------------------------------ECGQPN 218

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFE 388
             T+ SIL      V+L  G +IH  + ++    DV +  AL+ MY +CG+I +A++IF+
Sbjct: 219 EITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFD 278

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
           +M + +NV+SW  MIGG A +G   EA  LF  M+    +P   T++S+L+A A AG +E
Sbjct: 279 KM-VERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALE 337

Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
             ++     VN  G+   +    +LV +  + G ++DA  +  GM  E D   W  ++G 
Sbjct: 338 WVKEVHSHAVNA-GLALDLRVGNALVHMYAKSGSIDDARVVFDGMT-ERDIFSWTVMIGG 395

Query: 509 CRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
              H      Q A    ++++     P +  Y
Sbjct: 396 LAQHGR---GQEAFSLFLQMQRNGCLPNLTTY 424


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 208/659 (31%), Positives = 341/659 (51%), Gaps = 99/659 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMIS---------------------GYISS 39
           +I  Y K  +     K+FDEM +R+ V+WN +IS                     GY S+
Sbjct: 317 LIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSN 376

Query: 40  R---GSGFLEEARYLFDIMPER-------------DCVTWNTVISGYAKTGEMEEALRLF 83
           R   GS  +  A  L DI   R             D +  + ++  Y+K G +EEA ++F
Sbjct: 377 RFNLGSILMASAG-LADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVF 435

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA-----SLSALVSGLIQNGEL 138
            S+  RN VS+NA+++G++Q G    A+E +  M   D       + + L++ L  N   
Sbjct: 436 RSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLT-LCANQRN 494

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
           D   R +     R +  ++++     L+  Y + GR+  A+++F+++             
Sbjct: 495 DNQGRQIHAHLIRANITKNII-VETELVHMYSECGRLNYAKEIFNRMA------------ 541

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLD------ 248
           +RN  SWNSMI  Y + G+   A  +F+QM    ++ D FS ++M+S  + + D      
Sbjct: 542 ERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRE 601

Query: 249 -----------------------------MEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279
                                        M+ A  ++ +    D +  N MVS +   G 
Sbjct: 602 LHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGR 661

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
              A + F +M Q+N   WNS++AG       + +   F++M     + D  T  +I+++
Sbjct: 662 ANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNL 721

Query: 340 SSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
            S +  L  G Q+H ++ K   V   V +  AL+ MY++CGAI +AR +F+ M   KN+V
Sbjct: 722 CSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNG-KNIV 780

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWNAMI G + HG + EAL L++ M    + P  +TF+++LSAC+H GLVEEG + F SM
Sbjct: 781 SWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSM 840

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517
             +Y IE + EH+  +VD++GR GRLEDA + ++ MP EP+ + WGALLGACRVH ++++
Sbjct: 841 QEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDM 900

Query: 518 AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
            ++AA+ L +++P+N  PYV++ N+YA  GRW +  ++R +MK   +KK  G SW++ +
Sbjct: 901 GRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEIN 959



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 149/688 (21%), Positives = 278/688 (40%), Gaps = 174/688 (25%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGFLEEARYLFDIMP 56
           ++  ARKLF+EMP+R++ +WN MI               Y   RGSG   +      ++ 
Sbjct: 124 DLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVI- 182

Query: 57  ERDCVTWN-------------------------TVISGYAKTGEMEEALRLFNSMPARNV 91
            + C+                             ++ GYA+ G M++A+   + +   +V
Sbjct: 183 -KACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSV 241

Query: 92  VSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVSGLIQNGELDEAARV- 144
           V+WNA+I+G+++      A   FDRM      P   + + +  V G +++ +  +     
Sbjct: 242 VTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSK 301

Query: 145 LVKCG---------------SRCDGGEDLVRAY-----------NTLIVGYGQRGRVEEA 178
           L+ CG               ++CD  E  ++ +           N++I    Q G   +A
Sbjct: 302 LIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDA 361

Query: 179 RKLFDKIPVN-------------------CDRGEGN------VR--FKRNIVSWNSMIMC 211
             LF ++  +                    D G+G       VR     +I+  ++++  
Sbjct: 362 LVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDM 421

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLT 266
           Y+K G V  A ++F  +LER+  S+N +++GY+     EEA  L+  M       PD  T
Sbjct: 422 YSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFT 481

Query: 267 WNAM-----------------------------------VSGYAQIGNLELALDFFKRMP 291
           +  +                                   V  Y++ G L  A + F RM 
Sbjct: 482 FTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMA 541

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           ++N  SWNSMI G + N + + A++LF QMQ+ G KPD  + SS+LS    + D   G +
Sbjct: 542 ERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRE 601

Query: 352 IHQMVTK--------------------------------TVIPDVPINNALITMYARCGA 379
           +H  + +                                T+  DV +NN +++ +   G 
Sbjct: 602 LHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGR 661

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
             +A+ +F++M+  +N   WN+++ G A+ G   E+   F  M    +    +T +++++
Sbjct: 662 ANDAKNLFDQME-QRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVN 720

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
            C+    +E G Q    ++ +  +   +    +LVD+  + G +  A  +   M  + + 
Sbjct: 721 LCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGK-NI 779

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMK 527
             W A++     H   + A +  E + K
Sbjct: 780 VSWNAMISGYSKHGCSKEALILYEEMPK 807



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 142/527 (26%), Positives = 237/527 (44%), Gaps = 93/527 (17%)

Query: 42  SGFLEE---ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPA----RNVVSW 94
           SG L++   AR LF+ MPER+   WNT+I  YA+  +  E LRL+  M       +  ++
Sbjct: 119 SGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTF 178

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLS-------ALVSGLIQNGELDEAARVLVK 147
            ++I   +   D+    +    +     A L+       ALV G  + G +D+A   L  
Sbjct: 179 PSVIKACIAMEDMGGVRQLQSSVV---KAGLNCNLFVGGALVDGYARFGWMDDAVTSL-- 233

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD---KIPVNCD--------RGEGNV 196
                +G    V  +N +I GY +    EEA  +FD   KI V  D        R  G +
Sbjct: 234 --DEIEGTS--VVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGAL 289

Query: 197 R----------------FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           R                FK +    N++I  YAK  D  S  ++F++M ER+  +WN++I
Sbjct: 290 RSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSII 349

Query: 241 SGYIHVLDMEEASNLFVKMP---------------------------------------H 261
           S         +A  LF++M                                        +
Sbjct: 350 SAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLN 409

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            D +  +A+V  Y++ G +E A   F+ + ++N VS+N+++AG       E A++L+  M
Sbjct: 410 SDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDM 469

Query: 322 QVE-GEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGA 379
           Q E G +PD+ TF+++L++ +   + + G QIH  ++   +  ++ +   L+ MY+ CG 
Sbjct: 470 QSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGR 529

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           +  A+ IF  M   +N  SWN+MI G   +G   EAL LFK M+   + P   +  S+LS
Sbjct: 530 LNYAKEIFNRMA-ERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLS 588

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           +C      ++GR+    +V     E  I     LVD+  + G ++ A
Sbjct: 589 SCVSLSDSQKGRELHNFIVRNTMEEEGILQVV-LVDMYAKCGSMDYA 634



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 186/448 (41%), Gaps = 94/448 (20%)

Query: 208 MIMCYAKAG---DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----P 260
           ++M YA++G   D+  AR++FE+M ER+  +WNTMI  Y  V D  E   L+ +M     
Sbjct: 112 ILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGN 171

Query: 261 HPDTLTW-----------------------------------NAMVSGYAQIGNLELALD 285
             D  T+                                    A+V GYA+ G ++ A+ 
Sbjct: 172 FSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVT 231

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
               +   ++V+WN++IAG      +E A  +F +M   G  PD  TF+S L +   +  
Sbjct: 232 SLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRS 291

Query: 346 LHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
              G Q+H +++      D  + NALI MYA+C        +F+EM   +N V+WN++I 
Sbjct: 292 RDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMG-ERNQVTWNSIIS 350

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA---------------------- 442
             A  G   +AL LF  M+            S+L A A                      
Sbjct: 351 AEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNS 410

Query: 443 -------------HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
                          G+VEE  Q F+S++    +      + +L+    + G+ E+A++L
Sbjct: 411 DIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVS-----YNALLAGYVQEGKAEEALEL 465

Query: 490 IKGMPFE----PDKAVWGALLGAC-RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
              M  E    PD+  +  LL  C    N+ +  Q+ A  +     +N      L +MY+
Sbjct: 466 YHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYS 525

Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYSW 572
           + GR + A E+      N + +   YSW
Sbjct: 526 ECGRLNYAKEI-----FNRMAERNAYSW 548



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 116/252 (46%), Gaps = 7/252 (2%)

Query: 261 HPDTLTWNAMVSGYAQIGNLE---LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           +PD      ++  YA+ G L+    A   F+ MP++NL +WN+MI       DY   ++L
Sbjct: 103 NPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRL 162

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYAR 376
           + +M+  G   D+ TF S++     + D+    Q+   V K  +  ++ +  AL+  YAR
Sbjct: 163 YGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYAR 222

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
            G + +A    +E++   +VV+WNA+I G        EA  +F  M    V P   TF S
Sbjct: 223 FGWMDDAVTSLDEIE-GTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFAS 281

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
            L  C      + G+Q    ++   G +       +L+D+  +    E  + +   M  E
Sbjct: 282 ALRVCGALRSRDGGKQVHSKLI-ACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMG-E 339

Query: 497 PDKAVWGALLGA 508
            ++  W +++ A
Sbjct: 340 RNQVTWNSIISA 351



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 17/169 (10%)

Query: 349 GMQIH-QMVTKTVIPDVPINNALITMYARCGAIVE---ARIIFEEMKLLKNVVSWNAMIG 404
           G  IH QM++    PD  +   ++ +YAR G + +   AR +FEEM   +N+ +WN MI 
Sbjct: 90  GKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMP-ERNLTAWNTMIL 148

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE--GRQHFKSMVNEYG 462
             A      E L L+  MR         TF SV+ AC     +E+  G +  +S V + G
Sbjct: 149 AYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACI---AMEDMGGVRQLQSSVVKAG 205

Query: 463 IEPRIEHFASLVDIVGRHGRLEDA---MDLIKGMPFEPDKAVWGALLGA 508
           +   +    +LVD   R G ++DA   +D I+G         W A++  
Sbjct: 206 LNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSV----VTWNAVIAG 250


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 207/661 (31%), Positives = 330/661 (49%), Gaps = 102/661 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----------------------- 37
           +I+ Y K  ++A   ++F  M  RDVV+W+ MI+ Y                        
Sbjct: 119 LINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPN 178

Query: 38  ---------SSRGSGFLEEARYLFDIMP----ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                    +      LE+AR +  ++     E D      +I+ Y+K GE+  A  +F 
Sbjct: 179 RITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQ 238

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDE 140
            M  RNVVSW A+I    Q+  +  A E +++M       ++ +  +L++       L+ 
Sbjct: 239 KMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNR 298

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             R+      R  G E  V   N LI  Y +   +++AR+ FD++             KR
Sbjct: 299 GRRIHSHISER--GLETDVVVANALITMYCKCNCIQDARETFDRMS------------KR 344

Query: 201 NIVSWNSMIMCYAKAG--DVVSAREIFEQMLER--------------------------- 231
           +++SW++MI  YA++G  D  S  E+F Q+LER                           
Sbjct: 345 DVISWSAMIAGYAQSGYQDKESLDEVF-QLLERMRREGVFPNKVTFMSILKACSVHGALE 403

Query: 232 ----------------DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
                           D      + + Y     + EA  +F KM + + + W ++++ Y 
Sbjct: 404 QGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYI 463

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           + G+L  A   F  M  +N+VSWN MIAG   + D     +L   M+VEG +PDR T  S
Sbjct: 464 KCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIIS 523

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           IL     +  L  G  +H    K  +  D  +  +LI MY++CG + EAR +F+++   +
Sbjct: 524 ILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISN-R 582

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           + V+WNAM+ G   HG   EA++LFK M   +V P  ITF +V+SAC  AGLV+EGR+ F
Sbjct: 583 DTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIF 642

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           + M  ++ ++P  +H+  +VD++GR GRL++A + I+ MP EPD +VW ALLGAC+ H+N
Sbjct: 643 RIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDN 702

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           V+LA+ AA  ++++EP N++ YV L N+YA  GRWDD+ +VR +M    +KK  G S ++
Sbjct: 703 VQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIE 762

Query: 575 F 575
            
Sbjct: 763 I 763



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 165/343 (48%), Gaps = 43/343 (12%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D    N++++ Y++ G++      F+RM  +++V+W+SMIA    N     A   F +M+
Sbjct: 112 DIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMK 171

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIV 381
               +P+R TF SIL   +    L    +IH +V  + +  DV +  ALITMY++CG I 
Sbjct: 172 DANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEIS 231

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
            A  IF++MK  +NVVSW A+I   A H    EA EL++ M    + P  +TF+S+L++C
Sbjct: 232 LACEIFQKMK-ERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSC 290

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD------------- 488
                +  GR+   S ++E G+E  +    +L+ +  +   ++DA +             
Sbjct: 291 NTPEALNRGRR-IHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISW 349

Query: 489 -----------------------LIKGMPFE---PDKAVWGALLGACRVHNNVELAQVAA 522
                                  L++ M  E   P+K  + ++L AC VH  +E  +   
Sbjct: 350 SAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIH 409

Query: 523 EALMKVEPE-NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
             + KV  E + +    ++NMYA  G   +A +V   M++ N+
Sbjct: 410 AEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNV 452


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 197/624 (31%), Positives = 336/624 (53%), Gaps = 66/624 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           ++  Y+K   +   RK+F+ MP+R+VV+W  +++GYI                       
Sbjct: 145 LVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPN 204

Query: 40  -----------RGSGFLEEARYLFDIMPERDCVT----WNTVISGYAKTGEMEEALRLFN 84
                         G ++  R +     +  C +     N++++ YAK G +EEA  +F 
Sbjct: 205 SVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFC 264

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDR-------MPGRDSASLSALVSGLIQNGE 137
            M  R++VSWN +++G + NG    A++ F         +     A++  L + + Q G 
Sbjct: 265 GMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGL 324

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
             +    ++K G    G          L+  Y + G++  A  +F  +  +         
Sbjct: 325 ARQLHSSVLKRGFHSYG-----NVMTALMDAYSKAGQLGNALDIFLLMSGS--------- 370

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEAS 253
             +N+VSW +MI    + GDV  A  +F +M E     + F+++T+++  +  L  +  +
Sbjct: 371 --QNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHA 428

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
            +        ++   A+++ Y+++ N E AL  FK + QK++VSW++M+       D +G
Sbjct: 429 QVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDG 488

Query: 314 AIKLFIQMQVEGEKPDRHTFSSIL-SMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALI 371
           A  +FI+M + G KP+  T SS++ + +S    + LG Q H +  K    D + +++AL+
Sbjct: 489 ATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALV 548

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
           +MYAR G+I  A+ IFE  +  +++VSWN+M+ G A HG++ +AL++F+ M +  +    
Sbjct: 549 SMYARKGSIESAQCIFER-QTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDG 607

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           +TF+SV+  CAHAGLVEEG+++F SM  +YGI P +EH+A +VD+  R G+L++AM LI+
Sbjct: 608 VTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIE 667

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
           GM F     VW  LLGAC+VH NVEL ++AAE L+ +EP +S  YVLL N+Y+  G+W +
Sbjct: 668 GMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKE 727

Query: 552 ANEVRLLMKSNNIKKPTGYSWVDF 575
            +EVR LM +  +KK  G SW+  
Sbjct: 728 KDEVRKLMDTKKVKKEAGCSWIQI 751



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 137/484 (28%), Positives = 231/484 (47%), Gaps = 41/484 (8%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR--- 120
            +++  Y K   + +  ++F +MP RNVV+W ++++G++Q+G +++ +E F RM      
Sbjct: 143 TSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVW 202

Query: 121 -DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            +S + ++++S +   G +D   RV  +  S   G    V   N+L+  Y + G VEEAR
Sbjct: 203 PNSVTFASVLSVVASQGMVDLGRRVHAQ--SVKFGCCSTVFVCNSLMNMYAKCGLVEEAR 260

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ------MLERDT 233
            +F  +              R++VSWN+++      G  + A ++F        ML + T
Sbjct: 261 VVFCGMET------------RDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQST 308

Query: 234 FSWNTMISGYIHVLDMEEA--SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           ++    +   I  L +     S++  +  H       A++  Y++ G L  ALD F  M 
Sbjct: 309 YATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMS 368

Query: 292 -QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
             +N+VSW +MI GC  N D   A  LF +M+ +G  P+  T+S+IL+ S       L  
Sbjct: 369 GSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVA----SLPP 424

Query: 351 QIHQMVTKTVIPDVPI-NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           QIH  V KT      I   AL+  Y++     EA  IF +M   K+VVSW+AM+   A  
Sbjct: 425 QIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIF-KMIDQKDVVSWSAMLTCYAQA 483

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAH--AGLVEEGRQHFKSMVNEYGIEPRI 467
           G +  A  +F  M    + P   T  SV+ ACA   AG V+ GRQ F ++  ++     +
Sbjct: 484 GDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAG-VDLGRQ-FHAISIKHRCHDAL 541

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
              ++LV +  R G +E A  + +    + D   W ++L     H     +Q A +   +
Sbjct: 542 CVSSALVSMYARKGSIESAQCIFERQT-DRDLVSWNSMLSGYAQHG---YSQKALDVFRQ 597

Query: 528 VEPE 531
           +E E
Sbjct: 598 MEAE 601



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 147/319 (46%), Gaps = 45/319 (14%)

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRM 290
           + T + +  +    ++ D   A   F ++PH +TL  +  +  +A+ G++  ALD F  +
Sbjct: 36  QSTLACSVPLENQTNLNDATGARQAFDEIPHRNTL--DHALFDHARRGSVHQALDHFLDV 93

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
            +            C   +   GA  L   ++V G  PDR                 LG 
Sbjct: 94  HR------------CHGGRVGGGA--LVGVLKVCGSVPDRV----------------LGK 123

Query: 351 QIHQMVTKTVIP--DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           Q+H +  +      DV +  +L+ MY +  ++V+ R +FE M   +NVV+W +++ G   
Sbjct: 124 QLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPK-RNVVTWTSLLTGYIQ 182

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRI 467
            G  ++ +ELF  MR+  V P  +TF SVLS  A  G+V+ GR+ H +S+  ++G    +
Sbjct: 183 DGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSV--KFGCCSTV 240

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
               SL+++  + G +E+A  +  GM    D   W  L+ A  V N  +L     EAL  
Sbjct: 241 FVCNSLMNMYAKCGLVEEARVVFCGMETR-DMVSWNTLM-AGLVLNGHDL-----EALQL 293

Query: 528 VEPENSTPYVLLYNMYADV 546
                S+  +L  + YA V
Sbjct: 294 FHDSRSSITMLTQSTYATV 312


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 193/550 (35%), Positives = 289/550 (52%), Gaps = 78/550 (14%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +I+ Y+     G   +AR + D MPE+D +TW T++ G+ + G++  A   F  +   
Sbjct: 200 NALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGE 259

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVL 145
             V WNAMISG++Q+G  A A E F RM  +    D  + ++L+S     G       V 
Sbjct: 260 FDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSV- 318

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
                                  +GQ  R++        +PVN                 
Sbjct: 319 -----------------------HGQFIRLQPDFVPEAALPVN----------------- 338

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N+++  Y+K+G +  A +IF+ M  +D  SWNT++SGYI    ++ A+ +F +MP+   L
Sbjct: 339 NALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSEL 398

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           +W  MVSGY   G   LA D                            A+KLF QM+ E 
Sbjct: 399 SWMVMVSGYVHGG---LAED----------------------------ALKLFNQMRSED 427

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEAR 384
            KP  +T++  ++    +  L  G Q+H  +V           NAL+TMYARCGA+ +AR
Sbjct: 428 VKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDAR 487

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
           ++F  M  + + VSWNAMI     HG   EALELF  M +  + P  I+F+++L+AC HA
Sbjct: 488 LVFLVMPNVDS-VSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHA 546

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           GLV++G Q+F+SM  ++GI P  +H+A L+D++GR GR+ +A DLIK MPFEP  A+W A
Sbjct: 547 GLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEA 606

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           +L  CR++ ++EL   AA+ L K+ PE+   Y+LL N Y+  GRW DA  VR LM+   +
Sbjct: 607 ILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGV 666

Query: 565 KKPTGYSWVD 574
           KK  G SW++
Sbjct: 667 KKEPGCSWIE 676



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 182/437 (41%), Gaps = 97/437 (22%)

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
           A  +L+  Y   GR+ ++   FD +PV           +R+ V  N+MI  +A+A     
Sbjct: 91  AATSLVSAYAVAGRLRDSAAFFDSVPVA----------RRDTVLHNAMISAFARASLAAP 140

Query: 221 AREIFEQMLER------DTFSWNTMIS--GYIHVLDMEEASNLFV--------------- 257
           A  +F  +L        D +S+ +++S  G +H L +   + L                 
Sbjct: 141 AVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSN 200

Query: 258 -----------------------KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
                                  +MP  D LTW  +V G+ + G++  A   F+ +  + 
Sbjct: 201 ALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEF 260

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
            V WN+MI+G   +     A +LF +M  +   PD  TF+S+LS  +       G  +H 
Sbjct: 261 DVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHG 320

Query: 355 MVTKTVIPD------VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA------- 401
              + + PD      +P+NNAL+T+Y++ G I  A  IF+ M  LK+VVSWN        
Sbjct: 321 QFIR-LQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMT-LKDVVSWNTILSGYIE 378

Query: 402 ------------------------MIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
                                   M+ G    G A +AL+LF  MRS  V P   T+   
Sbjct: 379 SGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGA 438

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           ++AC   G ++ G+Q    +V + G E       +L+ +  R G ++DA  +   MP   
Sbjct: 439 VAACGELGALKHGKQLHAHLV-QCGFEASNSAGNALLTMYARCGAVKDARLVFLVMP-NV 496

Query: 498 DKAVWGALLGACRVHNN 514
           D   W A++ A   H +
Sbjct: 497 DSVSWNAMISALGQHGH 513



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 116/482 (24%), Positives = 206/482 (42%), Gaps = 107/482 (22%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           ARK+ DEMP++D ++W  ++ G++     G +  AR  F+ +     V WN +ISGY ++
Sbjct: 218 ARKVLDEMPEKDELTWTTIVVGHVR---KGDVHAARSAFEEIDGEFDVVWNAMISGYVQS 274

Query: 74  GEMEEALRLFNSM-------------------------------------------PARN 90
           G   EA  LF  M                                           P   
Sbjct: 275 GMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAA 334

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGS 150
           +   NA+++ + ++G +A A + FD M  +D  S + ++SG I++G LD AAR+  +   
Sbjct: 335 LPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPY 394

Query: 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
           + +       ++  ++ GY   G  E+A KLF+++     R E     K    ++   + 
Sbjct: 395 KSE------LSWMVMVSGYVHGGLAEDALKLFNQM-----RSED---VKPCDYTYAGAVA 440

Query: 211 CYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT 266
              + G +   +++   ++    E    + N +++ Y     +++A  +F+ MP+ D+++
Sbjct: 441 ACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVS 500

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
           WNAM+S   Q G+   AL+                               LF QM  +G 
Sbjct: 501 WNAMISALGQHGHGREALE-------------------------------LFDQMVAQGI 529

Query: 327 KPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVE 382
            PDR +F +IL+    +G+VD   G Q  + + +   + P       LI +  R G I E
Sbjct: 530 YPDRISFLTILTACNHAGLVD--DGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGE 587

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP----TYITFISVL 438
           AR + + M        W A++ GC  +G     L  + + + FK++P    TYI   +  
Sbjct: 588 ARDLIKTMPFEPTPAIWEAILSGCRING--DMELGAYAADQLFKMVPEHDGTYILLSNTY 645

Query: 439 SA 440
           SA
Sbjct: 646 SA 647



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 148/322 (45%), Gaps = 54/322 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y K  ++A A K+FD M  +DVVSWN ++SGYI    SG L+ A  +F  MP +  
Sbjct: 341 LVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIE---SGCLDNAARIFKEMPYKSE 397

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++W  ++SGY   G  E+AL+LFN M + +V   +     +   G VA   E        
Sbjct: 398 LSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCD-----YTYAGAVAACGEL------- 445

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
                     G +++G+   A   LV+CG           A N L+  Y + G V++AR 
Sbjct: 446 ----------GALKHGKQLHAH--LVQCGFEASNS-----AGNALLTMYARCGAVKDARL 488

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSW 236
           +F  +P N D            VSWN+MI    + G    A E+F+QM+ +    D  S+
Sbjct: 489 VFLVMP-NVDS-----------VSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISF 536

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
            T+++   H   +++    F  M       P    +  ++    + G +  A D  K MP
Sbjct: 537 LTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMP 596

Query: 292 -QKNLVSWNSMIAGCETNKDYE 312
            +     W ++++GC  N D E
Sbjct: 597 FEPTPAIWEAILSGCRINGDME 618



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 175/406 (43%), Gaps = 51/406 (12%)

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
           + AR +   +L   +    T+   +++ L  + A+   +    P  +   ++VS YA  G
Sbjct: 44  LHARLLTAALLHDPSHPHLTLRLLHLYTLSPDLATPAVLFRADPGPVAATSLVSAYAVAG 103

Query: 279 NLELALDFFKRMP--QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE--KPDRHTFS 334
            L  +  FF  +P  +++ V  N+MI+          A+ +F  +    +  +PD ++F+
Sbjct: 104 RLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFT 163

Query: 335 SILSMSSGIVDLHLG--MQIHQMVTKTVIPDV-PINNALITMYARC-------------- 377
           S+LS    + DL +    Q+H  V K     V  ++NALI +Y +C              
Sbjct: 164 SLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLD 223

Query: 378 --------------------GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
                               G +  AR  FEE+    +VV WNAMI G    G   EA E
Sbjct: 224 EMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVV-WNAMISGYVQSGMCAEAFE 282

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ---HFKSMVNEYGIEPRIEHFASLV 474
           LF+ M S ++ P   TF S+LSACA+AG    G+     F  +  ++  E  +    +LV
Sbjct: 283 LFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALV 342

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
            +  + G++  A  +   M  + D   W  +L     +        AA    ++  ++  
Sbjct: 343 TLYSKSGKIAVATKIFDSMTLK-DVVSWNTILSG---YIESGCLDNAARIFKEMPYKSEL 398

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD-FSPCG 579
            ++++ + Y   G  +DA ++   M+S ++ KP  Y++    + CG
Sbjct: 399 SWMVMVSGYVHGGLAEDALKLFNQMRSEDV-KPCDYTYAGAVAACG 443


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 215/631 (34%), Positives = 323/631 (51%), Gaps = 79/631 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K   +  AR +FD M +RD+ SW VMI G ++  G G  +EA  LF  M    C
Sbjct: 172 LVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGG-LAQHGRG--QEAFSLFLQMERGGC 228

Query: 61  V---------------------TW--------------------NTVISGYAKTGEMEEA 79
           +                      W                    N +I  YAK G +++A
Sbjct: 229 LPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDA 288

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQN 135
             +F+ M  R+V+SWNAMI G  QNG    A   F +M       DS +  +L++  +  
Sbjct: 289 RLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVST 348

Query: 136 GE---LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           G    + E  +  V+ G   D     +R  +  +  Y + G +++A+ +FDK+ V     
Sbjct: 349 GAWEWVKEVHKHAVEVGLVSD-----LRVGSAFVHMYIRCGSIDDAQLIFDKLAV----- 398

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
                  RN+ +WN+MI   A+      A  +F QM     F   T     +     EEA
Sbjct: 399 -------RNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEA 451

Query: 253 SNLFVKMPHP--------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
              +VK  H         D    NA+V  YA+ GN   A   F  M ++N+ +W  MI+G
Sbjct: 452 LE-WVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISG 510

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPD 363
              +     A  LF+QM  EG  PD  T+ SILS  +    L    ++H   V   ++ D
Sbjct: 511 LAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSD 570

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           + + NAL+ MYA+CG++ +AR +F++M L ++V SW  MIGG A HG   +AL+LF  M+
Sbjct: 571 LRVGNALVHMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGGLAQHGRGLDALDLFVKMK 629

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
                P   +F++VLSAC+HAGLV+EGR+ F S+  +YGIEP +EH+  +VD++GR G+L
Sbjct: 630 LEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQL 689

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
           E+A   I  MP EP  A WGALLGAC  + N+E+A+ AA+  +K++P++++ YVLL N+Y
Sbjct: 690 EEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIY 749

Query: 544 ADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A  G W+    VR +M+   I+K  G SW++
Sbjct: 750 AATGNWEQKLLVRSMMQRRGIRKEPGRSWIE 780



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 169/623 (27%), Positives = 284/623 (45%), Gaps = 76/623 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGFLEE 47
           +++ YVK   +  A+ +FD+M +R+V+SW VMI G             ++  +  GF+  
Sbjct: 71  LVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPN 130

Query: 48  ARYLFDIMPER-----------------------DCVTWNTVISGYAKTGEMEEALRLFN 84
           +     I+                          D    N ++  YAK+G +++A  +F+
Sbjct: 131 SYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFD 190

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-----SASLSAL-VSGLIQNGEL 138
            M  R++ SW  MI G  Q+G    A   F +M         +  LS L  S +   G L
Sbjct: 191 GMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGAL 250

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
           +    V    G    G    +R  N LI  Y + G +++AR +FD +   CD        
Sbjct: 251 EWVKEVHKHAGKA--GFISDLRVGNALIHMYAKCGSIDDARLVFDGM---CD-------- 297

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL--F 256
            R+++SWN+MI   A+ G    A  IF +M +++ F  ++  + Y+ +L+   ++    +
Sbjct: 298 -RDVISWNAMIGGLAQNGCGHEAFTIFLKM-QQEGFVPDS--TTYLSLLNTHVSTGAWEW 353

Query: 257 VKMPH---------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
           VK  H          D    +A V  Y + G+++ A   F ++  +N+ +WN+MI G   
Sbjct: 354 VKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQ 413

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPIN 367
            K    A+ LF+QM+ EG  PD  TF +ILS + G   L    ++H       + D+ + 
Sbjct: 414 QKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVG 473

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           NAL+ MYA+CG  + A+ +F++M + +NV +W  MI G A HG   EA  LF  M    +
Sbjct: 474 NALVHMYAKCGNTMYAKQVFDDM-VERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGI 532

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
           +P   T++S+LSACA  G +E  ++     VN  G+   +    +LV +  + G ++DA 
Sbjct: 533 VPDATTYVSILSACASTGALEWVKEVHSHAVNA-GLVSDLRVGNALVHMYAKCGSVDDAR 591

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE--PENSTPYVLLYNMYAD 545
            +   M  E D   W  ++G    H    L  +     MK+E    N   +V + +  + 
Sbjct: 592 RVFDDM-LERDVYSWTVMIGGLAQHGR-GLDALDLFVKMKLEGFKPNGYSFVAVLSACSH 649

Query: 546 VGRWDDANEVRLLMKSNNIKKPT 568
            G  D+     L +  +   +PT
Sbjct: 650 AGLVDEGRRQFLSLTQDYGIEPT 672



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 138/554 (24%), Positives = 241/554 (43%), Gaps = 91/554 (16%)

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
            A+++ +++ G + +A   FD+M  R+  S + ++ GL   G   EA    ++   + +G
Sbjct: 69  TALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQM--QREG 126

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
                  Y +++      G +E  +++             N     ++   N+++  YAK
Sbjct: 127 FIPNSYTYVSILNANASAGALEWVKEVHSHAV--------NAGLALDLRVGNALVHMYAK 178

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW--- 267
           +G +  AR +F+ M+ERD FSW  MI G       +EA +LF++M      P+  T+   
Sbjct: 179 SGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSI 238

Query: 268 ----------------------------------NAMVSGYAQIGNLELALDFFKRMPQK 293
                                             NA++  YA+ G+++ A   F  M  +
Sbjct: 239 LNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDR 298

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           +++SWN+MI G   N     A  +F++MQ EG  PD  T+ S+L+            ++H
Sbjct: 299 DVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVH 358

Query: 354 QMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
           +   +  ++ D+ + +A + MY RCG+I +A++IF+++  ++NV +WNAMIGG A     
Sbjct: 359 KHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLA-VRNVTTWNAMIGGVAQQKCG 417

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSA----------------CAHAGLVEE------- 449
            EAL LF  MR     P   TF+++LSA                   AGLV+        
Sbjct: 418 REALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALV 477

Query: 450 ------GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE---PDKA 500
                 G   +   V +  +E  +  +  ++  + +HG   +A  L   M  E   PD  
Sbjct: 478 HMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDAT 537

Query: 501 VWGALLGACRVHNNVE-LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
            + ++L AC     +E + +V + A+      +      L +MYA  G  DDA  V   M
Sbjct: 538 TYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDM 597

Query: 560 KSNNIKKPTGYSWV 573
              ++     YSW 
Sbjct: 598 LERDV-----YSWT 606



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 191/413 (46%), Gaps = 72/413 (17%)

Query: 165 LIVGYGQRGRVEEARKLFDKI---------------------PVNCDRGEG------NVR 197
           +I GY + G  E+A K++ ++                     PV+   G+          
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F+ ++    +++  Y K G +  A+ IF++M+ER+  SW  MI G  H    +EA + F+
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 258 KMPH----PDTLTW-----------------------------------NAMVSGYAQIG 278
           +M      P++ T+                                   NA+V  YA+ G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
           +++ A   F  M ++++ SW  MI G   +   + A  LF+QM+  G  P+  T+ SIL+
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 339 MS--SGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
            S  +    L    ++H+   K   I D+ + NALI MYA+CG+I +AR++F+ M   ++
Sbjct: 241 ASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGM-CDRD 299

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           V+SWNAMIGG A +G   EA  +F  M+    +P   T++S+L+     G  E  ++  K
Sbjct: 300 VISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHK 359

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
             V E G+   +   ++ V +  R G ++DA  +   +    +   W A++G 
Sbjct: 360 HAV-EVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGG 410



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 151/301 (50%), Gaps = 13/301 (4%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D     A+V+ Y + G+++ A   F +M ++N++SW  MI G       + A   F+QMQ
Sbjct: 64  DVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQ 123

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIV 381
            EG  P+ +T+ SIL+ ++    L    ++H   V   +  D+ + NAL+ MYA+ G+I 
Sbjct: 124 REGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSID 183

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
           +AR++F+ M + +++ SW  MIGG A HG   EA  LF  M     LP   T++S+L+A 
Sbjct: 184 DARVVFDGM-VERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNAS 242

Query: 442 A--HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           A    G +E  ++  K    + G    +    +L+ +  + G ++DA  +  GM  + D 
Sbjct: 243 AITSTGALEWVKEVHKH-AGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMC-DRDV 300

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPE----NSTPYVLLYNMYADVGRWDDANEV 555
             W A++G    +        A    +K++ E    +ST Y+ L N +   G W+   EV
Sbjct: 301 ISWNAMIGGLAQNG---CGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEV 357

Query: 556 R 556
            
Sbjct: 358 H 358



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 123/241 (51%), Gaps = 7/241 (2%)

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           MI G       E A+K++ QM+ EG +P+  T+ SIL      V L  G +IH  + ++ 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 361 I-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              DV +  AL+ MY +CG+I +A++IF++M + +NV+SW  MIGG A +G   EA   F
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKM-VERNVISWTVMIGGLAHYGRGQEAFHRF 119

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M+    +P   T++S+L+A A AG +E  ++     VN  G+   +    +LV +  +
Sbjct: 120 LQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA-GLALDLRVGNALVHMYAK 178

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G ++DA  +  GM  E D   W  ++G    H      Q A    +++E     P +  
Sbjct: 179 SGSIDDARVVFDGM-VERDIFSWTVMIGGLAQHGR---GQEAFSLFLQMERGGCLPNLTT 234

Query: 540 Y 540
           Y
Sbjct: 235 Y 235



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 159/360 (44%), Gaps = 46/360 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           ++  Y K      A+++FD+M +R+V +W VMISG ++  G G   EA  LF       I
Sbjct: 476 LVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISG-LAQHGCG--HEAFSLFLQMLREGI 532

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS----WNAMISGFLQNGDVANA 110
           +P  D  T+ +++S  A TG +E    + +      +VS     NA++  + + G V +A
Sbjct: 533 VP--DATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDA 590

Query: 111 IEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG 170
              FD M  RD  S + ++ GL Q+G   +A  + VK   + +G +    ++  ++    
Sbjct: 591 RRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKM--KLEGFKPNGYSFVAVLSACS 648

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-L 229
             G V+E R+ F  + +  D G      +  +  +  M+    +AG +  A+     M +
Sbjct: 649 HAGLVDEGRRQF--LSLTQDYG-----IEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPI 701

Query: 230 ERDTFSWNTMISGYIHV--LDMEE-ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
           E     W  ++   +    L+M E A+   +K+      T+  + + YA  GN E  L  
Sbjct: 702 EPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKL-L 760

Query: 287 FKRMPQKNLV------SW-------NSMIAG----CETNKDYEGAIKLFIQMQVEGEKPD 329
            + M Q+  +      SW       +S + G     E+ + Y     L  +++ EG  PD
Sbjct: 761 VRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPD 820



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 9/159 (5%)

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MIGG A +G+A +A++++  MR     P  IT++S+L AC     ++ G++   + + + 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKK-IHAHIIQS 59

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           G +  +    +LV++  + G ++DA  +   M  E +   W  ++G    +      Q A
Sbjct: 60  GFQSDVRVETALVNMYVKCGSIDDAQLIFDKM-VERNVISWTVMIGGLAHYGR---GQEA 115

Query: 522 AEALMKVEPE----NSTPYVLLYNMYADVGRWDDANEVR 556
               ++++ E    NS  YV + N  A  G  +   EV 
Sbjct: 116 FHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVH 154


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 202/626 (32%), Positives = 323/626 (51%), Gaps = 76/626 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ YVK    + A +LFDEMP +   SWN ++S +     +G L+ AR +FD +P+ D 
Sbjct: 54  LLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAK---AGNLDSARRVFDEIPQPDS 110

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W T+I GY   G  + A+  F  M +  +       +  L +   A A++   +    
Sbjct: 111 VSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKK---- 166

Query: 121 DSASLSALVSGLIQNGELDEAARVL---VKCGSRCDGGEDLVR-------AYNTLIVGYG 170
               + + V  L Q+G +  A  +L    KCG          R        +NT+I  + 
Sbjct: 167 ----VHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHM 222

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
           Q  + + A  LFD++               +IVSWNS+I  Y   G  + A E F  ML+
Sbjct: 223 QFCQFDLALALFDQMT------------DPDIVSWNSIITGYCHQGYDIRALETFSFMLK 270

Query: 231 R-----DTFSWNTMISG-------------YIHVL--DMEEA---SNLFVKM-------- 259
                 D F+  +++S              + H++  D++ A    N  + M        
Sbjct: 271 SSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVE 330

Query: 260 -----------PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
                      P  + + + +++ GY +IG+++ A   F  +  +++V+W +MI G   N
Sbjct: 331 VAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQN 390

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPIN 367
                A+ LF  M  EG KP+ +T +++LS+ S +  L  G Q+H +  +   +  V + 
Sbjct: 391 GLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVG 450

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           NALITMY+R G+I +AR IF  +   ++ ++W +MI   A HG   EA+ELF+ M    +
Sbjct: 451 NALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINL 510

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
            P +IT++ VLSAC H GLVE+G+ +F  M N + IEP   H+A ++D++GR G LE+A 
Sbjct: 511 KPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAY 570

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
           + I+ MP EPD   WG+LL +CRVH  V+LA+VAAE L+ ++P NS  Y+ L N  +  G
Sbjct: 571 NFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACG 630

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWV 573
           +W+DA +VR  MK   +KK  G+SWV
Sbjct: 631 KWEDAAKVRKSMKDKAVKKEQGFSWV 656



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 132/269 (49%), Gaps = 32/269 (11%)

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
           G  + AR I   +     F  N +++ Y+      +A  LF +MP   T +WN ++S +A
Sbjct: 31  GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           + GNL+ A   F  +PQ + VSW +MI G      ++ A+  F++M   G  P + TF++
Sbjct: 91  KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +L+  +    L +G ++H  V K      VP+ N+L+ MYA+CG  V A+++F+ M+L  
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKD 210

Query: 395 ------------------------------NVVSWNAMIGGCASHGFATEALELFKSM-R 423
                                         ++VSWN++I G    G+   ALE F  M +
Sbjct: 211 TSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLK 270

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQ 452
           S  + P   T  SVLSACA+   ++ G+Q
Sbjct: 271 SSSLKPDKFTLGSVLSACANRESLKLGKQ 299


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 208/614 (33%), Positives = 312/614 (50%), Gaps = 100/614 (16%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G L  A ++FD MP +   +WNT+ISGYAK G  E + RL   MP  + VSW A+I G+
Sbjct: 58  TGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGY 117

Query: 102 LQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LVKCG-SRCD 153
            Q G   NAI  F +M          ++S ++S    N  LD   ++   +VK G   C 
Sbjct: 118 NQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSC- 176

Query: 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
                V    +L+  Y + G    A+ +FD++ V            +NI +WN++I  Y 
Sbjct: 177 -----VPVATSLLNMYAKCGDPVIAKVVFDRMTV------------KNISTWNALISLYM 219

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTW- 267
           ++G    A   FE+M +RD  SWN+MISGY       EA  +F KM +     PD  T  
Sbjct: 220 QSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLA 279

Query: 268 ----------------------------------NAMVSGYAQIGNLELA---------- 283
                                             NA++S YA+ G +E+A          
Sbjct: 280 SILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTS 339

Query: 284 ----------LD-------------FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                     LD              F ++  +++V+W +MI G   N  +  A++LF  
Sbjct: 340 NLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRL 399

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGA 379
           M  EG +P+ +T +++LS+SS +  L  G QIH    K      P + NALI MYA+ G 
Sbjct: 400 MVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGN 459

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           I  A+ +F+     K +VSW +MI   A HG   EA+ LF+ M S  + P +IT++ VLS
Sbjct: 460 INVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLS 519

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           AC H GLVE+GR+++  M   + IEP + H+A ++D+ GR G L++A   I+ MP EPD 
Sbjct: 520 ACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDN 579

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
             WG+LL +C++H N +LA+VAAE L+ ++P NS  Y+ L N+Y+  G+W++A + R LM
Sbjct: 580 IAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLM 639

Query: 560 KSNNIKKPTGYSWV 573
           K   ++K  G SW+
Sbjct: 640 KDRGVRKEKGISWI 653



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 162/634 (25%), Positives = 258/634 (40%), Gaps = 157/634 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-DIMPER- 58
           +ISGY K+     +R+L  EMP  D VSW  +I GY      G  + A ++F  ++ ER 
Sbjct: 82  LISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGY---NQFGLFDNAIWMFAKMISERV 138

Query: 59  ------------------------------------DCVTWNT-VISGYAKTGEMEEALR 81
                                                CV   T +++ YAK G+   A  
Sbjct: 139 PPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKV 198

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           +F+ M  +N+ +WNA+IS ++Q+G    A   F++MP RD  S ++++SG  Q G   EA
Sbjct: 199 VFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEA 258

Query: 142 ARV----------------LVKCGSRCDGGEDL-----VRAY-------------NTLIV 167
             +                L    S C   E L     + AY             N LI 
Sbjct: 259 LAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALIS 318

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y + G VE AR +           E N     NI+++ S++  Y K G+V  AREIF +
Sbjct: 319 MYAKSGGVEIARLIV----------EHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNK 368

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW---------------- 267
           + +RD  +W  MI GY+      +A  LF  M    P P++ T                 
Sbjct: 369 LRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHG 428

Query: 268 -------------------NAMVSGYAQIGNLELALDFFKRMP--QKNLVSWNSMIAGCE 306
                              NA+++ YA+ GN+ +A   F  +P  +K +VSW SMI    
Sbjct: 429 KQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALA 487

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDV 364
            +   + AI LF +M   G KPD  T+  +LS  + +  +  G + + M+T+   + P +
Sbjct: 488 QHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTL 547

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
                +I +Y R G + EA +  E M +  + ++W +++  C  H  A   L    + R 
Sbjct: 548 SHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNAD--LAKVAAERL 605

Query: 425 FKVLP----TYITFISVLSACAHAGLVEEGRQ----------------HFKSMVNEYGIE 464
             + P     Y+   +V SAC       + R+                H K+ V+ +G+E
Sbjct: 606 LLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVE 665

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
             I      +     +  + +  + IK M F PD
Sbjct: 666 DVIHPQKDEI-----YKLMAEIWEEIKKMGFIPD 694



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 177/386 (45%), Gaps = 46/386 (11%)

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
           +I ++ L    +  N +++ Y     +  A ++F +MP   T +WN ++SGYA+ GN E+
Sbjct: 35  QIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEV 94

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           +      MP  + VSW ++I G      ++ AI +F +M  E   P + T S++LS  + 
Sbjct: 95  SRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAA 154

Query: 343 IVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLL-------- 393
              L +G +IH  V K  +   VP+  +L+ MYA+CG  V A+++F+ M +         
Sbjct: 155 NQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNAL 214

Query: 394 ----------------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL-PT 430
                                 +++VSWN+MI G +  G+  EAL +F  M +   L P 
Sbjct: 215 ISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPD 274

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA----SLVDIVGRHGRLEDA 486
             T  S+LSACA+   +  G+Q     ++ Y +    E       +L+ +  + G +E A
Sbjct: 275 NFTLASILSACANLEKLNIGKQ-----IHAYILRAETETSGAVGNALISMYAKSGGVEIA 329

Query: 487 MDLIK-GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
             +++       +   + +LL       NV+ A+   E   K+   +   +  +   Y  
Sbjct: 330 RLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAR---EIFNKLRDRDVVAWTAMIVGYVQ 386

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYS 571
            G W+DA E+  LM  N   +P  Y+
Sbjct: 387 NGLWNDALELFRLM-VNEGPEPNSYT 411


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 210/623 (33%), Positives = 321/623 (51%), Gaps = 71/623 (11%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD-----IMPER- 58
           Y K  E   A  +FDEMPQR+V SW VMI G  S+    F +  ++  +     I+P++ 
Sbjct: 165 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVG--STEHGLFFDGFKFFCEMLNSGILPDKF 222

Query: 59  -------DCVTWNTVISG-------------------------YAKTGEMEEALRLFNSM 86
                   C+  +++  G                         YAK G +E++  +FN M
Sbjct: 223 AYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMM 282

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMP-GRDSASLSALVSGLIQNGELDEA--AR 143
              N VSWNAMISG   NG    A + F RM  G  + ++  LVS     G+L +    +
Sbjct: 283 TEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGK 342

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
            +  C S   G E  V     LI  Y + G + +AR +FD   +NC              
Sbjct: 343 EVQNCASEL-GIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVN----------T 391

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASN--LFVKMPH 261
            WN+MI  Y+++G    A E++ QM +       + +  Y  V +   AS    F ++ H
Sbjct: 392 PWNAMISGYSQSGCSQEALELYVQMCQNGI---TSDLYTYCSVFNAIAASKSLQFGRVVH 448

Query: 262 PDTLTW----------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
              L            NA+   Y++ G LE     F RM ++++VSW +++     +   
Sbjct: 449 GMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLG 508

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNAL 370
           E A+  F  M+ EG  P++ TFSS+L   + +  L  G Q+H ++ K  +  +  I +AL
Sbjct: 509 EEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESAL 568

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           I MYA+CG+I EA  +F+++    ++VSW A+I G A HG   +AL+LF+ M    +   
Sbjct: 569 IDMYAKCGSITEAGKVFDKISN-PDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKAN 627

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            +T + VL AC+H G+VEEG  +F+ M + YG+ P +EH+A ++D++GR GRL+DAM+ I
Sbjct: 628 AVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFI 687

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           + MP EP++ VW  LLG CRVH NVEL ++AA  ++ + PE S  YVLL N Y + G ++
Sbjct: 688 RKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYE 747

Query: 551 DANEVRLLMKSNNIKKPTGYSWV 573
           D   +R +MK   +KK  GYSW+
Sbjct: 748 DGLSLRNVMKDQGVKKEPGYSWI 770



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 217/478 (45%), Gaps = 41/478 (8%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V +N     Y+K  E   A  +F+ MP RNV SW  MI G  ++G   +  +FF  M   
Sbjct: 156 VLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNS 215

Query: 121 ----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               D  + SA++   I    L+    V  +   R  G    +    +L+  Y + G +E
Sbjct: 216 GILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMR--GFATHIFVSTSLLNMYAKLGSIE 273

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD-TFS 235
           ++  +F            N+  + N VSWN+MI      G  + A ++F +M     T +
Sbjct: 274 DSYWVF------------NMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPN 321

Query: 236 WNTMIS-----GYIHVLDM-EEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFK 288
             T++S     G +  ++M +E  N   ++    + L   A++  Y++ G+L  A   F 
Sbjct: 322 MYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVF- 380

Query: 289 RMPQKNLVS------WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
                N ++      WN+MI+G   +   + A++L++QM   G   D +T+ S+ +  + 
Sbjct: 381 ---DTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAA 437

Query: 343 IVDLHLGMQIHQMVTKTVIP--DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
              L  G  +H MV K  +    V +NNA+   Y++CG + + R +F+ M+  +++VSW 
Sbjct: 438 SKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRME-ERDIVSWT 496

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
            ++   +      EAL  F  MR     P   TF SVL +CA    +E GRQ    ++ +
Sbjct: 497 TLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQ-VHGLLCK 555

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            G++      ++L+D+  + G + +A  +   +   PD   W A++     H  VE A
Sbjct: 556 AGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS-NPDIVSWTAIISGYAQHGLVEDA 612



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 12/127 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +I  Y K   + +A K+FD++   D+VSW  +ISGY      G +E+A  LF  M     
Sbjct: 568 LIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQ---HGLVEDALQLFRRMELSGI 624

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMP-ARNVV----SWNAMISGFLQNGDVANAI 111
           + + VT   V+   +  G +EE L  F  M     VV     +  +I    + G + +A+
Sbjct: 625 KANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAM 684

Query: 112 EFFDRMP 118
           EF  +MP
Sbjct: 685 EFIRKMP 691


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 208/614 (33%), Positives = 312/614 (50%), Gaps = 100/614 (16%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G L  A ++FD MP +   +WNT+ISGYAK G  E + RL   MP  + VSW A+I G+
Sbjct: 58  TGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGY 117

Query: 102 LQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LVKCG-SRCD 153
            Q G   NAI  F +M          ++S ++S    N  LD   ++   +VK G   C 
Sbjct: 118 NQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSC- 176

Query: 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
                V    +L+  Y + G    A+ +FD++ V            +NI +WN++I  Y 
Sbjct: 177 -----VPVATSLLNMYAKCGDPVIAKVVFDRMTV------------KNISTWNALISLYM 219

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTW- 267
           ++G    A   FE+M +RD  SWN+MISGY       EA  +F KM +     PD  T  
Sbjct: 220 QSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLA 279

Query: 268 ----------------------------------NAMVSGYAQIGNLELA---------- 283
                                             NA++S YA+ G +E+A          
Sbjct: 280 SILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTS 339

Query: 284 ----------LD-------------FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                     LD              F ++  +++V+W +MI G   N  +  A++LF  
Sbjct: 340 NLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRL 399

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGA 379
           M  EG +P+ +T +++LS+SS +  L  G QIH    K      P + NALI MYA+ G 
Sbjct: 400 MVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGN 459

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           I  A+ +F+     K +VSW +MI   A HG   EA+ LF+ M S  + P +IT++ VLS
Sbjct: 460 INVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLS 519

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           AC H GLVE+GR+++  M   + IEP + H+A ++D+ GR G L++A   I+ MP EPD 
Sbjct: 520 ACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDN 579

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
             WG+LL +C++H N +LA+VAAE L+ ++P NS  Y+ L N+Y+  G+W++A + R LM
Sbjct: 580 IAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLM 639

Query: 560 KSNNIKKPTGYSWV 573
           K   ++K  G SW+
Sbjct: 640 KDRGVRKEKGISWI 653



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 162/634 (25%), Positives = 258/634 (40%), Gaps = 157/634 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-DIMPER- 58
           +ISGY K+     +R+L  EMP  D VSW  +I GY      G  + A ++F  ++ ER 
Sbjct: 82  LISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGY---NQFGLFDNAIWMFAKMISERV 138

Query: 59  ------------------------------------DCVTWNT-VISGYAKTGEMEEALR 81
                                                CV   T +++ YAK G+   A  
Sbjct: 139 PPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKV 198

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           +F+ M  +N+ +WNA+IS ++Q+G    A   F++MP RD  S ++++SG  Q G   EA
Sbjct: 199 VFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEA 258

Query: 142 ARV----------------LVKCGSRCDGGEDL-----VRAY-------------NTLIV 167
             +                L    S C   E L     + AY             N LI 
Sbjct: 259 LVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALIS 318

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y + G VE AR +           E N     NI+++ S++  Y K G+V  AREIF +
Sbjct: 319 MYAKSGGVEIARLIV----------EHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNK 368

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW---------------- 267
           + +RD  +W  MI GY+      +A  LF  M    P P++ T                 
Sbjct: 369 LRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHG 428

Query: 268 -------------------NAMVSGYAQIGNLELALDFFKRMP--QKNLVSWNSMIAGCE 306
                              NA+++ YA+ GN+ +A   F  +P  +K +VSW SMI    
Sbjct: 429 KQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALA 487

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDV 364
            +   + AI LF +M   G KPD  T+  +LS  + +  +  G + + M+T+   + P +
Sbjct: 488 QHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTL 547

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
                +I +Y R G + EA +  E M +  + ++W +++  C  H  A   L    + R 
Sbjct: 548 SHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNAD--LAKVAAERL 605

Query: 425 FKVLP----TYITFISVLSACAHAGLVEEGRQ----------------HFKSMVNEYGIE 464
             + P     Y+   +V SAC       + R+                H K+ V+ +G+E
Sbjct: 606 LLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVE 665

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
             I      +     +  + +  + IK M F PD
Sbjct: 666 DVIHPQKDEI-----YKLMAEIWEEIKKMGFIPD 694



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 177/386 (45%), Gaps = 46/386 (11%)

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
           +I ++ L    +  N +++ Y     +  A ++F +MP   T +WN ++SGYA+ GN E+
Sbjct: 35  QIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEV 94

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           +      MP  + VSW ++I G      ++ AI +F +M  E   P + T S++LS  + 
Sbjct: 95  SRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAA 154

Query: 343 IVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLL-------- 393
              L +G +IH  V K  +   VP+  +L+ MYA+CG  V A+++F+ M +         
Sbjct: 155 NQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNAL 214

Query: 394 ----------------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL-PT 430
                                 +++VSWN+MI G +  G+  EAL +F  M +   L P 
Sbjct: 215 ISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPD 274

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA----SLVDIVGRHGRLEDA 486
             T  S+LSACA+   +  G+Q     ++ Y +    E       +L+ +  + G +E A
Sbjct: 275 NFTLASILSACANLEKLNIGKQ-----IHAYILRAETETSGAVGNALISMYAKSGGVEIA 329

Query: 487 MDLIK-GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
             +++       +   + +LL       NV+ A+   E   K+   +   +  +   Y  
Sbjct: 330 RLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAR---EIFNKLRDRDVVAWTAMIVGYVQ 386

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYS 571
            G W+DA E+  LM  N   +P  Y+
Sbjct: 387 NGLWNDALELFRLM-VNEGPEPNSYT 411


>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 199/535 (37%), Positives = 300/535 (56%), Gaps = 55/535 (10%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN-SMPARNVVSWNAMISGFLQNGD 106
           A +LFD +   D    NT+I  YA+  +   ALR +   M AR+V               
Sbjct: 59  ATFLFDHLHHPDAFHCNTIIRAYARKPDFPAALRFYYCKMLARSVPP------------- 105

Query: 107 VANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR---VLVKCGSRCDGGEDLVRAYN 163
                         +  +   L+      G   E  +    +VK G     G DL  A N
Sbjct: 106 --------------NHYTFPLLIKVCTDIGSFREGLKGHARIVKFGF----GSDLF-ARN 146

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
           +LI  Y   GR+  AR +FD+   +C           ++VS+NSMI  Y K G++ +AR+
Sbjct: 147 SLIRMYSVFGRIGNARMVFDE---SC---------WLDLVSYNSMIDGYVKNGEIGAARK 194

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           +F +M +RD  SWN +I+GY+ V D++ A+ LF  +P  D ++WN M+ G A++GN+ LA
Sbjct: 195 VFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARVGNVSLA 254

Query: 284 LDFFKRMPQ--KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK--PDRHTFSSILSM 339
           + FF RMP   +N+VSWNS++A     K+Y   + LF +M VEG +  P+  T  S+L+ 
Sbjct: 255 VKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKM-VEGREAVPNEATLVSVLTA 313

Query: 340 SSGIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            + +  L +GM +H  + +  + PDV +   L+TMYA+CGA+  A+ +F+EM + ++VVS
Sbjct: 314 CANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPV-RSVVS 372

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN+MI G   HG   +ALELF  M      P   TFISVLSAC HAG+V EG  +F  M 
Sbjct: 373 WNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTHAGMVMEGWWYFDLMQ 432

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
             Y IEP++EH+  +VD++ R G +E++ +LI+ +P +   A+WGALL  C  H + EL 
Sbjct: 433 RVYKIEPKVEHYGCMVDLLARAGLVENSEELIRMVPVKAGSAIWGALLSGCSNHLDSELG 492

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           ++ A+  +++EP++  PY+LL NMYA  GRWDD   VRL++K   ++K    S V
Sbjct: 493 EIVAKRFIELEPQDIGPYILLSNMYAAKGRWDDVEHVRLMIKEKGLQKEAASSLV 547



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 214/451 (47%), Gaps = 74/451 (16%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G +  AR +FD     D V++N++I GY K GE+  A ++FN MP R+V+SWN +I+G++
Sbjct: 156 GRIGNARMVFDESCWLDLVSYNSMIDGYVKNGEIGAARKVFNEMPDRDVLSWNCLIAGYV 215

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
             GD+  A E F+ +P RD+ S                                     +
Sbjct: 216 GVGDLDAANELFETIPERDAVS-------------------------------------W 238

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N +I G  + G V  A K FD++P             RN+VSWNS++  +A+  +     
Sbjct: 239 NCMIDGCARVGNVSLAVKFFDRMPAAV----------RNVVSWNSVLALHARVKNYGECL 288

Query: 223 EIFEQMLERDTFSWN--TMISGYIHVLDMEEAS-----NLFVKMPH--PDTLTWNAMVSG 273
            +F +M+E      N  T++S      ++ + S     + F++  +  PD L    +++ 
Sbjct: 289 MLFGKMVEGREAVPNEATLVSVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTM 348

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           YA+ G ++LA   F  MP +++VSWNSMI G   +   + A++LF++M+  G++P+  TF
Sbjct: 349 YAKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATF 408

Query: 334 SSILSMSSGIVDLHLGM--------QIHQMVTKTVIPDVPINNALITMYARCGAIVEARI 385
            S+LS  +     H GM         + Q V K + P V     ++ + AR G +  +  
Sbjct: 409 ISVLSACT-----HAGMVMEGWWYFDLMQRVYK-IEPKVEHYGCMVDLLARAGLVENSEE 462

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +   + +      W A++ GC++H   +E  E+  + R  ++ P  I    +LS    A 
Sbjct: 463 LIRMVPVKAGSAIWGALLSGCSNH-LDSELGEIV-AKRFIELEPQDIGPYILLSNMYAAK 520

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
              +  +H + M+ E G++   E  +SLV +
Sbjct: 521 GRWDDVEHVRLMIKEKGLQK--EAASSLVHL 549



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 182/348 (52%), Gaps = 37/348 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI GYVK  E+  ARK+F+EMP RDV+SWN +I+GY+   G G L+ A  LF+ +PERD 
Sbjct: 179 MIDGYVKNGEIGAARKVFNEMPDRDVLSWNCLIAGYV---GVGDLDAANELFETIPERDA 235

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPA--RNVVSWNAMISGFLQNGDVANAIEFFDRM- 117
           V+WN +I G A+ G +  A++ F+ MPA  RNVVSWN++++   +  +    +  F +M 
Sbjct: 236 VSWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMV 295

Query: 118 PGRDS----ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
            GR++    A+L ++++     G+L     + V    R +  +  V     L+  Y + G
Sbjct: 296 EGREAVPNEATLVSVLTACANLGKLSMG--MWVHSFIRSNNIKPDVLLLTCLLTMYAKCG 353

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----L 229
            ++ A+ +FD++PV            R++VSWNSMIM Y   G    A E+F +M     
Sbjct: 354 AMDLAKGVFDEMPV------------RSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQ 401

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELAL 284
           + +  ++ +++S   H   + E    F  M       P    +  MV   A+ G +E + 
Sbjct: 402 QPNDATFISVLSACTHAGMVMEGWWYFDLMQRVYKIEPKVEHYGCMVDLLARAGLVENSE 461

Query: 285 DFFKRMPQK-NLVSWNSMIAGCETNKDYE-GAI--KLFIQMQVEGEKP 328
           +  + +P K     W ++++GC  + D E G I  K FI+++ +   P
Sbjct: 462 ELIRMVPVKAGSAIWGALLSGCSNHLDSELGEIVAKRFIELEPQDIGP 509



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 127/325 (39%), Gaps = 44/325 (13%)

Query: 245 HVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           H +    A+ LF  + HPD    N ++  YA+  +   AL F+                 
Sbjct: 52  HSVTFPRATFLFDHLHHPDAFHCNTIIRAYARKPDFPAALRFY----------------- 94

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PD 363
                        + +M      P+ +TF  ++ + + I     G++ H  + K     D
Sbjct: 95  -------------YCKMLARSVPPNHYTFPLLIKVCTDIGSFREGLKGHARIVKFGFGSD 141

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           +   N+LI MY+  G I  AR++F+E   L ++VS+N+MI G   +G    A ++F  M 
Sbjct: 142 LFARNSLIRMYSVFGRIGNARMVFDESCWL-DLVSYNSMIDGYVKNGEIGAARKVFNEMP 200

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
              VL            C  AG V  G     + + E   E     +  ++D   R G +
Sbjct: 201 DRDVLSW---------NCLIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARVGNV 251

Query: 484 EDAMDLIKGMPFEPDKAV-WGALLG-ACRVHNNVELAQVAAEALMKVEP-ENSTPYVLLY 540
             A+     MP      V W ++L    RV N  E   +  + +   E   N    V + 
Sbjct: 252 SLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVL 311

Query: 541 NMYADVGRWDDANEVRLLMKSNNIK 565
              A++G+      V   ++SNNIK
Sbjct: 312 TACANLGKLSMGMWVHSFIRSNNIK 336


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 189/523 (36%), Positives = 294/523 (56%), Gaps = 28/523 (5%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----D 121
           V++ YAK   +EEA ++F+ MP R++V WN +ISG+ QNG    A+E   RM       D
Sbjct: 216 VVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPD 275

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           S ++ +++  +   G L    R +     R  G E  V     L+  Y + G V  AR +
Sbjct: 276 SITIVSILPAVADVGSL-RIGRSIHGYSMRA-GFESFVNVSTALVDMYSKCGSVGTARLI 333

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           FD++              + +VSWNSMI  Y + GD  +A EIF++M++      N  + 
Sbjct: 334 FDRMT------------GKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVM 381

Query: 242 GYIHVL----DMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           G +H      D+E+   +   +       D    N+++S Y++   +++A + F+ +  K
Sbjct: 382 GALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHK 441

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
            LVSWN+MI G   N     AI  F +MQ++  KPD  T  S++   + +  L     IH
Sbjct: 442 TLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIH 501

Query: 354 QMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
            +V +T +  +V +  AL+ MYA+CGA+  AR +F+ M   ++V +WNAMI G  +HG  
Sbjct: 502 GLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDE-RHVTTWNAMIDGYGTHGLG 560

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
             ALELF+ M+   + P  +TF+ VLSAC+H+GLVEEG Q+F SM  +YG+EP ++H+ +
Sbjct: 561 KAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGA 620

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           +VD++GR  RL +A D I+ MP EP  +V+GA+LGACR+H NVEL + AA  +  ++P++
Sbjct: 621 MVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDD 680

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
              +VLL N+YA    WD    VR  M+   I+K  G+S V+ 
Sbjct: 681 GGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVEL 723



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 122/462 (26%), Positives = 212/462 (45%), Gaps = 70/462 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +++ Y K R + +A K+FD MP+RD+V WN +ISGY     +GF + A  L   M E   
Sbjct: 216 VVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQ---NGFGKTALELVLRMQEEGK 272

Query: 59  --DCVTWNTVISG-----------------------------------YAKTGEMEEALR 81
             D +T  +++                                     Y+K G +  A  
Sbjct: 273 RPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARL 332

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN----GE 137
           +F+ M  + VVSWN+MI G++QNGD   A+E F +M        +  V G +      G+
Sbjct: 333 IFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGD 392

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           + E  R + K   + + G D V   N+LI  Y +  RV+ A ++F+ +            
Sbjct: 393 V-EQGRFVHKLLDQLELGSD-VSVMNSLISMYSKCKRVDIAAEIFENLQ----------- 439

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
             + +VSWN+MI+ YA+ G +  A + F +M    ++ D+F+  ++I     +  + +A 
Sbjct: 440 -HKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAK 498

Query: 254 ---NLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
               L ++     +     A+V  YA+ G +  A   F  M ++++ +WN+MI G  T+ 
Sbjct: 499 WIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHG 558

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPIN 367
             + A++LF +M+ E  KP+  TF  +LS  S    +  G Q    + K   + P +   
Sbjct: 559 LGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHY 618

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            A++ +  R   + EA    ++M +   +  + AM+G C  H
Sbjct: 619 GAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIH 660



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 225/490 (45%), Gaps = 47/490 (9%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
           ++S + K G + EA R+F  +  +    ++ M+ G+ +N  + +A+ FF RM       +
Sbjct: 115 LVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPV 174

Query: 126 SALVSGLIQ----NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
               + L++    N +L +     + C    +G    V A   ++  Y +   VEEA K+
Sbjct: 175 VYNFTYLLKVCGDNADLRKGKE--IHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKM 232

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWN 237
           FD++P            +R++V WN++I  YA+ G   +A E+  +M E     D+ +  
Sbjct: 233 FDRMP------------ERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIV 280

Query: 238 TMISGY-----------IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
           +++              IH   M      FV +         A+V  Y++ G++  A   
Sbjct: 281 SILPAVADVGSLRIGRSIHGYSMRAGFESFVNVS-------TALVDMYSKCGSVGTARLI 333

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F RM  K +VSWNSMI G   N D   A+++F +M  E  +    T    L   + + D+
Sbjct: 334 FDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDV 393

Query: 347 HLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             G  +H+++ +  +  DV + N+LI+MY++C  +  A  IFE ++  K +VSWNAMI G
Sbjct: 394 EQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQ-HKTLVSWNAMILG 452

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
            A +G   EA++ F  M+   + P   T +SV+ A A   ++ + +     +V    ++ 
Sbjct: 453 YAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKW-IHGLVIRTCLDK 511

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
            +    +LVD+  + G +  A  L   M  E     W A++     H    L + A E  
Sbjct: 512 NVFVATALVDMYAKCGAVHTARKLFDMMD-ERHVTTWNAMIDGYGTHG---LGKAALELF 567

Query: 526 MKVEPENSTP 535
            K++ E   P
Sbjct: 568 EKMKKEVIKP 577



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 160/362 (44%), Gaps = 64/362 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGF---------------- 44
           ++  Y K   +  AR +FD M  + VVSWN MI GY+ +   G                 
Sbjct: 317 LVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMT 376

Query: 45  ----------------LEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEALRLFN 84
                           +E+ R++  ++ +     D    N++IS Y+K   ++ A  +F 
Sbjct: 377 NVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFE 436

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
           ++  + +VSWNAMI G+ QNG +  AI++F +M  +    DS ++ +++  L +   L +
Sbjct: 437 NLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQ 496

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A  +       C      V     L+  Y + G V  ARKLFD +             +R
Sbjct: 497 AKWIHGLVIRTCLDKNVFVA--TALVDMYAKCGAVHTARKLFDMMD------------ER 542

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLF 256
           ++ +WN+MI  Y   G   +A E+FE+M    ++ +  ++  ++S   H   +EE    F
Sbjct: 543 HVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYF 602

Query: 257 VKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGCETNKD 310
             M       P    + AMV    +   L  A DF ++MP +  +S + +M+  C  +K+
Sbjct: 603 GSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKN 662

Query: 311 YE 312
            E
Sbjct: 663 VE 664


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 209/623 (33%), Positives = 322/623 (51%), Gaps = 69/623 (11%)

Query: 4   GYVKRREMAKARKLFDEMPQRDVVSWNVMISGY---------------ISSRG------- 41
            Y K  ++  A +LFD+M QR+  SW V+I+G                + S+G       
Sbjct: 114 AYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFA 173

Query: 42  -SGFLEEARYLFDIMPERDCVTWNTVISG--------------YAKTGEMEEALRLFNSM 86
            SG L+    L D +   + V    VI G              YAK  E+E++ ++FN+M
Sbjct: 174 YSGILQICIGL-DSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTM 232

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAA 142
              NVVSWNAMI+GF  N    +A + F RM G     D+ +   +   +    ++++A 
Sbjct: 233 TEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAK 292

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQR-GRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            V    G   + G D      T ++    + G ++EAR +F+   + C       RF   
Sbjct: 293 EV---SGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITC-------RFN-- 340

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
              WN+MI  Y ++G    A E+F +M + D +  +       + +   +  +L  K+ H
Sbjct: 341 -APWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKV-H 398

Query: 262 PDTL----------TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
              +            NA+ + YA+ G+LE     F RM  ++L+SW S++       ++
Sbjct: 399 ARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEW 458

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNAL 370
           + AI++F  M+ EG  P++ TFSS+L   + +  L  G Q+H ++ K  +  D  I +AL
Sbjct: 459 DKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESAL 518

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           + MYA+CG + +A+ +F  +    + VSW A+I G A HG   +AL+LF+ M    V P 
Sbjct: 519 VDMYAKCGCLGDAKKVFNRIS-NADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPN 577

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            +TF+ VL AC+H GLVEEG Q+FK M   YG+ P +EH+A +VD++ R G L DAM+ I
Sbjct: 578 AVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFI 637

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
             MP EP++ VW  LLGACRVH NVEL ++AA+ ++  + ENS  YVLL N Y + G + 
Sbjct: 638 SRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYK 697

Query: 551 DANEVRLLMKSNNIKKPTGYSWV 573
           D   +R LMK   +KK  G SW+
Sbjct: 698 DGLSLRHLMKEQGVKKEPGCSWI 720



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 127/516 (24%), Positives = 238/516 (46%), Gaps = 39/516 (7%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           GFL ++++          V  N V   Y+K  +++ A RLF+ M  RN  SW  +I+G  
Sbjct: 92  GFLLKSKF----SNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLA 147

Query: 103 QNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
           +NG   +  EFF  M  +    D  + S ++   I    ++    V  +   R       
Sbjct: 148 ENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTF 207

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           V     L+  Y +   +E++ K+F            N   + N+VSWN+MI  +      
Sbjct: 208 VS--TALLNMYAKLQEIEDSYKVF------------NTMTEVNVVSWNAMITGFTSNDLY 253

Query: 219 VSAREIFEQML------ERDTFSWNTMISGYIH-VLDMEEASNLFVKMP-HPDTLTWNAM 270
           + A ++F +M+      +  TF       G +  V   +E S   +++    +TL   A+
Sbjct: 254 LDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTAL 313

Query: 271 VSGYAQIGNLELALDFFKR--MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           +   ++ G+L+ A   F    +  +    WN+MI+G   +   E A++LF +M       
Sbjct: 314 IDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYL 373

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARII 386
           D +T+ S+ +  + +  L LG ++H    K+   +  V I+NA+   YA+CG++ + R +
Sbjct: 374 DHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKV 433

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F  M+  ++++SW +++   +      +A+E+F +MR+  + P   TF SVL +CA+  L
Sbjct: 434 FNRME-DRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCL 492

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +E G+Q    ++ + G++      ++LVD+  + G L DA  +   +    D   W A++
Sbjct: 493 LEYGQQ-VHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAII 550

Query: 507 GACRVHNNVELAQVAAEALMK--VEPENSTPYVLLY 540
                H  V+ A      +++  VEP   T   +L+
Sbjct: 551 AGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLF 586



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 153/335 (45%), Gaps = 40/335 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVV--------SWNVMISGYISSRGSGFLEEARYLF 52
           MISGY++     KA +LF +M Q D+          +N + +    S G      AR + 
Sbjct: 346 MISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKV--HARAIK 403

Query: 53  DIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIE 112
             +        N V + YAK G +E+  ++FN M  R+++SW ++++ + Q  +   AIE
Sbjct: 404 SGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIE 463

Query: 113 FFDRMPGRDSA----SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
            F  M     A    + S+++        L+   +V    G  C  G D+ +   + +V 
Sbjct: 464 IFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVH---GIICKVGLDMDKCIESALVD 520

Query: 169 -YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y + G + +A+K+F++I  N D            VSW ++I  +A+ G V  A ++F +
Sbjct: 521 MYAKCGCLGDAKKVFNRIS-NAD-----------TVSWTAIIAGHAQHGIVDDALQLFRR 568

Query: 228 M----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIG 278
           M    +E +  ++  ++    H   +EE    F  M       P+   +  +V   +++G
Sbjct: 569 MVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVG 628

Query: 279 NLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
           +L  A++F  RMP + N + W +++  C  + + E
Sbjct: 629 HLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVE 663


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 221/707 (31%), Positives = 342/707 (48%), Gaps = 139/707 (19%)

Query: 5    YVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGF-LEEARY 50
            +V+  ++A A++  +    RDVV +N +I+              Y   R  G  +    Y
Sbjct: 329  FVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTY 388

Query: 51   LF----------------------DIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPA 88
            L                       ++    D    N++IS YA+ G++  A  LFN+MP 
Sbjct: 389  LSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPK 448

Query: 89   RNVVSWNAMISGFLQNGDVANAIEFFDRM------PGR-----------DSASLS----- 126
            R+++SWNA+I+G+ +  D   A++ + +M      PGR           +S++ S     
Sbjct: 449  RDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMI 508

Query: 127  ---ALVSGLIQNGELDEA-ARVLVKCGSRCDG--------GEDLVRAYNTLIVGYGQRGR 174
                L SG+  NG L  A   +  +CGS  +           D++ ++N++I G+ Q G 
Sbjct: 509  HEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDII-SWNSMIAGHAQHGS 567

Query: 175  VEEARKLF----------DKIP-----VNCDRGEG------------NVRFKRNIVSWNS 207
             E A KLF          DKI      V C   E                 + ++   N+
Sbjct: 568  YEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNA 627

Query: 208  MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP----- 262
            +I  Y + G +  A E+F  +  R+  SW  MI G+    +  +A  LF +M +      
Sbjct: 628  LINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPV 687

Query: 263  ----------------------------------DTLTWNAMVSGYAQIGNLELALDFFK 288
                                              DT   NA++S Y++ G++  A   F 
Sbjct: 688  KSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFD 747

Query: 289  RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            +MP ++++SWN MIAG   N     A++   QMQ +G   ++ +F SIL+  S    L  
Sbjct: 748  KMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEE 807

Query: 349  GMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
            G ++H ++V + +  DV +  ALI+MYA+CG++ EA+ +F+     KNVV+WNAMI   A
Sbjct: 808  GKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTE-KNVVTWNAMINAYA 866

Query: 408  SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
             HG A++AL+ F  M    + P   TF S+LSAC H+GLV EG + F S+ +++G+ P I
Sbjct: 867  QHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTI 926

Query: 468  EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
            EH+  LV ++GR GR ++A  LI  MPF PD AVW  LLGACR+H NV LA+ AA   +K
Sbjct: 927  EHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALK 986

Query: 528  VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            +   N   YVLL N+YA  GRWDD  ++R +M+   I+K  G SW++
Sbjct: 987  LNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIE 1033



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 157/563 (27%), Positives = 263/563 (46%), Gaps = 78/563 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSGFLEE 47
           +I+ YVK R ++ A ++F +MP+RDV+SWN +IS Y                + +GF+  
Sbjct: 123 LINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPS 182

Query: 48  ARYLFDIMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                 I+                        +RD    N++++ Y K  ++  A ++F+
Sbjct: 183 KITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFS 242

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            +  R+VVS+N M+  + Q   V   I  F +M       D  +   L+        LDE
Sbjct: 243 GIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDE 302

Query: 141 AARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
             R+    V  G   D     +R    L   + + G V  A++  +              
Sbjct: 303 GKRIHKLAVNEGLNSD-----IRVGTALATMFVRCGDVAGAKQALEAFA----------- 346

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF- 256
             R++V +N++I   A+ G    A E + QM   D    N   + Y+ VL+    S    
Sbjct: 347 -DRDVVVYNALIAALAQHGHYEEAFEQYYQM-RSDGVVMNR--TTYLSVLNACSTSKALG 402

Query: 257 ---------VKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
                     ++ H  D    N+++S YA+ G+L  A + F  MP+++L+SWN++IAG  
Sbjct: 403 AGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYA 462

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVP 365
             +D   A+KL+ QMQ EG KP R TF  +LS  +       G  IH+ + ++ I  +  
Sbjct: 463 RREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGH 522

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           + NAL+ MY RCG+I+EA+ +FE  +  ++++SWN+MI G A HG    A +LF  M+  
Sbjct: 523 LANALMNMYRRCGSIMEAQNVFEGTR-ARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKE 581

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            + P  ITF SVL  C +   +E GRQ    ++ E G++  +    +L+++  R G L+D
Sbjct: 582 GLEPDKITFASVLVGCKNPEALELGRQ-IHMLIIESGLQLDVNLGNALINMYIRCGSLQD 640

Query: 486 AMDLIKGMPFEPDKAVWGALLGA 508
           A ++   +    +   W A++G 
Sbjct: 641 AYEVFHSLRHR-NVMSWTAMIGG 662



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 150/323 (46%), Gaps = 39/323 (12%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLF 256
           N  ++  ++    +   +  A+ I  QM+E     D F  N +I+ Y+    + +A  +F
Sbjct: 81  NRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVF 140

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
           +KMP  D ++WN+++S YAQ G        FK+                        A +
Sbjct: 141 LKMPRRDVISWNSLISCYAQQG--------FKKK-----------------------AFQ 169

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYA 375
           LF +MQ  G  P + T+ SIL+      +L  G +IH  + +      P + N+L+ MY 
Sbjct: 170 LFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYG 229

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +C  +  AR +F  +   ++VVS+N M+G  A   +  E + LF  M S  + P  +T+I
Sbjct: 230 KCEDLPSARQVFSGI-YRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYI 288

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           ++L A     +++EG++  K  VNE G+   I    +L  +  R G +  A   ++    
Sbjct: 289 NLLDAFTTPSMLDEGKRIHKLAVNE-GLNSDIRVGTALATMFVRCGDVAGAKQALEAFA- 346

Query: 496 EPDKAVWGALLGACRVHNNVELA 518
           + D  V+ AL+ A   H + E A
Sbjct: 347 DRDVVVYNALIAALAQHGHYEEA 369


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 211/623 (33%), Positives = 321/623 (51%), Gaps = 71/623 (11%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD-----IMPER- 58
           Y K  E   A  +FDEMPQR+V SW VMI G  S+    F +  ++  +     I+P++ 
Sbjct: 111 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVG--STEHGLFFDGFKFFCEMLNSGILPDKF 168

Query: 59  -------DCVTWNTVISG-------------------------YAKTGEMEEALRLFNSM 86
                   C+  +++  G                         YAK G +E++  +FN M
Sbjct: 169 AYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMM 228

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMP-GRDSASLSALVSGLIQNGELDEA--AR 143
              N VSWNAMISG   NG    A + F RM  G  + ++  LVS     G+L +    +
Sbjct: 229 TEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGK 288

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
            +  C S   G E  V     LI  Y + G + +AR +FD   +NC              
Sbjct: 289 EVQNCASEL-GIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVN----------T 337

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASN--LFVKMPH 261
            WN+MI  Y+++G    A E++ QM +    S    +  Y  V +   AS    F ++ H
Sbjct: 338 PWNAMISGYSQSGCSQEALELYVQMCQNGITS---DLYTYCSVFNAIAASKSLQFGRVVH 394

Query: 262 PDTLTW----------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
              L            NA+   Y++ G LE     F RM ++++VSW +++     +   
Sbjct: 395 GMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLG 454

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNAL 370
           E A+  F  M+ EG  P++ TFSS+L   + +  L  G Q+H ++ K  +  +  I +AL
Sbjct: 455 EEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESAL 514

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           I MYA+CG+I EA  +F+++    ++VSW A+I G A HG   +AL+LF+ M    +   
Sbjct: 515 IDMYAKCGSITEAGKVFDKISN-PDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKAN 573

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            +T + VL AC+H G+VEEG  +F+ M + YG+ P +EH+A ++D++GR GRL+DAM+ I
Sbjct: 574 AVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFI 633

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           + MP EP++ VW  LLG CRVH NVEL ++AA  ++ + PE S  YVLL N Y + G ++
Sbjct: 634 RKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYE 693

Query: 551 DANEVRLLMKSNNIKKPTGYSWV 573
           D   +R +MK   +KK  GYSW+
Sbjct: 694 DGLSLRNVMKDQGVKKEPGYSWI 716



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 217/478 (45%), Gaps = 41/478 (8%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V +N     Y+K  E   A  +F+ MP RNV SW  MI G  ++G   +  +FF  M   
Sbjct: 102 VLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNS 161

Query: 121 ----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               D  + SA++   I    L+    V  +   R  G    +    +L+  Y + G +E
Sbjct: 162 GILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMR--GFATHIFVSTSLLNMYAKLGSIE 219

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD-TFS 235
           ++  +F            N+  + N VSWN+MI      G  + A ++F +M     T +
Sbjct: 220 DSYWVF------------NMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPN 267

Query: 236 WNTMIS-----GYIHVLDM-EEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFK 288
             T++S     G +  ++M +E  N   ++    + L   A++  Y++ G+L  A   F 
Sbjct: 268 MYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVF- 326

Query: 289 RMPQKNLVS------WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
                N ++      WN+MI+G   +   + A++L++QM   G   D +T+ S+ +  + 
Sbjct: 327 ---DTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAA 383

Query: 343 IVDLHLGMQIHQMVTKTVIP--DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
              L  G  +H MV K  +    V +NNA+   Y++CG + + R +F+ M+  +++VSW 
Sbjct: 384 SKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRME-ERDIVSWT 442

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
            ++   +      EAL  F  MR     P   TF SVL +CA    +E GRQ    ++ +
Sbjct: 443 TLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQ-VHGLLCK 501

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            G++      ++L+D+  + G + +A  +   +   PD   W A++     H  VE A
Sbjct: 502 AGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS-NPDIVSWTAIISGYAQHGLVEDA 558



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 12/127 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +I  Y K   + +A K+FD++   D+VSW  +ISGY      G +E+A  LF  M     
Sbjct: 514 LIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQ---HGLVEDALQLFRRMELSGI 570

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMP-ARNVV----SWNAMISGFLQNGDVANAI 111
           + + VT   V+   +  G +EE L  F  M     VV     +  +I    + G + +A+
Sbjct: 571 KANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAM 630

Query: 112 EFFDRMP 118
           EF  +MP
Sbjct: 631 EFIRKMP 637


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 198/582 (34%), Positives = 311/582 (53%), Gaps = 58/582 (9%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y K R ++ AR++FD     +V S+N +IS Y       ++E A  LFD MP+ D V++N
Sbjct: 53  YSKCRRLSAARRVFDHTHDCNVFSFNTLISAYAKE---SYVEVAHQLFDEMPQPDSVSYN 109

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
           T+I+ YA+ G+ + A +LF  M                          F D     D  +
Sbjct: 110 TLIAAYARRGDTQPAFQLFLEMRE-----------------------AFLD----MDGFT 142

Query: 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK 184
           LS +++    N  L      L    S   G +  V   N LI  Y + G ++EAR++F  
Sbjct: 143 LSGIITACGINVGLIRQLHAL----SVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHW 198

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMI 240
           +  +           R+ VSWNSM++ Y +  +   A E++ +M  R    D F+  +++
Sbjct: 199 LSED-----------RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 241 SGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLEL-ALDFFKRMPQKNL 295
           + + +V D+        K+     H ++   + ++  Y++ G   L     F  +   +L
Sbjct: 248 TAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDL 307

Query: 296 VSWNSMIAGCETNKDY-EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           V WN+MI+G    +D  + A++ F Q+Q  G +PD  +   ++S  S +     G Q+H 
Sbjct: 308 VLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHG 367

Query: 355 MVTKTVIPD--VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
           +  K  IP   + +NNALI MY++CG + +A+ +F+ M    N VS+N+MI G A HG  
Sbjct: 368 LALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQHGMG 426

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
            ++L LF+ M      PT ITFISVL+ACAH G VE+G+ +F  M  ++GIEP   HF+ 
Sbjct: 427 FQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSC 486

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           ++D++GR G+L +A  LI+ +PF+P    W ALLGACR+H NVELA  AA  L++++P N
Sbjct: 487 MIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLN 546

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + PYV+L N+Y+D GR  DA  VR LM+   +KK  G SW++
Sbjct: 547 AAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIE 588



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 123/468 (26%), Positives = 207/468 (44%), Gaps = 78/468 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG------FLEEARYLFDI 54
           +IS Y K   +  A +LFDEMPQ D VS+N +I+ Y + RG        FLE      D+
Sbjct: 80  LISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAY-ARRGDTQPAFQLFLEMREAFLDM 138

Query: 55  ---------------------MPERDCVT--------WNTVISGYAKTGEMEEALRLFNS 85
                                +     VT         N +I+ Y+K G ++EA R+F+ 
Sbjct: 139 DGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHW 198

Query: 86  MPA-RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGL--IQN--G 136
           +   R+ VSWN+M+  ++Q+ + + A+E +  M  R    D  +L+++++    +Q+  G
Sbjct: 199 LSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLG 258

Query: 137 ELDEAARVLVKCGSRCDG--GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
            L   A+ L+K G   +   G  L+  Y+         G + + RK+FD+I         
Sbjct: 259 GLQFHAK-LIKSGYHQNSHVGSGLIDLYSKC------GGCMLDCRKVFDEIS-------- 303

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQML----ERDTFSWNTMISGYIHVLDM 249
                 ++V WN+MI  Y+   D+   A E F Q+       D  S   +IS   ++   
Sbjct: 304 ----NPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSP 359

Query: 250 EEASN-----LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
            +        L + +P       NA+++ Y++ GNL  A   F  MP+ N VS+NSMIAG
Sbjct: 360 SQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAG 419

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIP 362
              +     ++ LF +M      P   TF S+L+  +    +  G     M+ +   + P
Sbjct: 420 YAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEP 479

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +    + +I +  R G + EA  + E +        W+A++G C  HG
Sbjct: 480 EAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHG 527



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 161/365 (44%), Gaps = 53/365 (14%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N  ++ Y+K   + +AR +F+   + + FS+NT+IS                        
Sbjct: 47  NHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISA----------------------- 83

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
                   YA+   +E+A   F  MPQ + VS+N++IA      D + A +LF++M+   
Sbjct: 84  --------YAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAF 135

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEAR 384
              D  T S I++     +++ L  Q+H +   T +   V + NALIT Y++ G + EAR
Sbjct: 136 LDMDGFTLSGIITACG--INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEAR 193

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            IF  +   ++ VSWN+M+     H   ++ALEL+  M    ++    T  SVL+A  + 
Sbjct: 194 RIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNV 253

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR-LEDAMDLIKGMPFEPDKAVWG 503
             +  G Q F + + + G        + L+D+  + G  + D   +   +   PD  +W 
Sbjct: 254 QDLLGGLQ-FHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEIS-NPDLVLWN 311

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
            ++    ++   +L+  A E   +++     P              DD + V ++   +N
Sbjct: 312 TMISGYSLYE--DLSDEALECFRQLQGVGHRP--------------DDCSLVCVISACSN 355

Query: 564 IKKPT 568
           +  P+
Sbjct: 356 MSSPS 360


>gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 681

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 205/646 (31%), Positives = 326/646 (50%), Gaps = 104/646 (16%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGY 70
           M  A  LFDEMP+R+  SWN MI GY+     G  E +  LFD+MP+++  +WN VISG+
Sbjct: 58  MTDAHNLFDEMPERNCFSWNTMIEGYMRV---GDKERSLKLFDLMPQKNDYSWNVVISGF 114

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---------- 120
           AK GE++ A +LFN MP RN V+WN+MI G+ +NG    A+  F  +             
Sbjct: 115 AKAGELDVAKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTF 174

Query: 121 --------------------------------DSASLSALVSGLIQNGELDEAARVLVKC 148
                                           DS  +S+L++   + G LD A  VL   
Sbjct: 175 VLASVIGACADLGAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVL--- 231

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
               D  +D   + + LI+GY   GR+ +A ++F        R + N  F    V WNS+
Sbjct: 232 -KMMDEVDDF--SLSALIMGYANCGRMSDAVRIF--------RTKSNPCF----VVWNSL 276

Query: 209 IMCYAKAGDVVSAREIFEQM----LERDTFSWNTMIS---------------GYIHVLDM 249
           I  Y    + + A  +  +M    ++ D+ +   ++S               GY+  + +
Sbjct: 277 ISGYVNNHEEMKAFALVNEMKNNRVQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGL 336

Query: 250 --------------------EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKR 289
                                +A  LF ++   DT+  N+M++ Y   G +  A + F+ 
Sbjct: 337 IDSVIVASAFIDAYSKCRNPNDACKLFSELKAYDTVLLNSMITAYCNCGRIRDAKNIFET 396

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
           MP K+L+SWNS+I G   N     A+ +F +M     + DR + +S++S  + I  L LG
Sbjct: 397 MPSKSLISWNSIIVGLAQNAYPLEALDVFGKMNKLDLRMDRFSLASVISACACISSLELG 456

Query: 350 MQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
            Q+      T +  D  ++ +L+  Y +CG I   R +F+ M +  + VSWN+M+ G A+
Sbjct: 457 EQVFARAIITGLESDQAVSTSLVDFYCKCGFIENGRKLFDSM-IKTDEVSWNSMLMGYAT 515

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           +G+  E L LF  M+   + PT ITF  VLSAC H GLVEEGR+ F  M  +Y I+P IE
Sbjct: 516 NGYGLETLTLFNEMKQAGLRPTDITFTGVLSACDHCGLVEEGRKWFNIMKYDYHIDPGIE 575

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528
           H++ +VD+  R G L++A++L++ MPFE D ++W ++L  C  H + +L +  A+ ++++
Sbjct: 576 HYSCMVDLFARAGCLKEALNLVEHMPFEADCSMWSSVLRGCVAHGDKDLGKKVAQQIIQL 635

Query: 529 EPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            PE+S+ YV L  ++A  G W+ +  VR +M    +KK  G+SW D
Sbjct: 636 NPESSSAYVQLSGIFATSGDWESSALVRKIMTEKQVKKHPGFSWAD 681



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 138/482 (28%), Positives = 240/482 (49%), Gaps = 37/482 (7%)

Query: 39  SRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMI 98
           +R  G + +A  LFD MPER+C +WNT+I GY + G+ E +L+LF+ MP +N  SWN +I
Sbjct: 52  ARCGGTMTDAHNLFDEMPERNCFSWNTMIEGYMRVGDKERSLKLFDLMPQKNDYSWNVVI 111

Query: 99  SGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSR-----CD 153
           SGF + G++  A + F+ MP R+  + ++++ G  +NG   EA  +  +  S      C 
Sbjct: 112 SGFAKAGELDVAKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSC- 170

Query: 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
            G+  V A  ++I      G +E  +++  +I ++      +V     ++S  S+I  YA
Sbjct: 171 -GDTFVLA--SVIGACADLGAIEYGKQVHARILMD------DVELDSVLIS--SLINLYA 219

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
           K G + +A  + + M E D FS + +I GY +   M +A  +F    +P  + WN+++SG
Sbjct: 220 KCGHLDTANYVLKMMDEVDDFSLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISG 279

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNS-----MIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           Y        A      M + N V  +S     +++ C +  + + A       Q+ G   
Sbjct: 280 YVNNHEEMKAFALVNEM-KNNRVQVDSSTITVILSACSSTGNAQYA------KQMHGYVC 332

Query: 329 DRHTFSSILSMSSGIVDLHLGMQ----IHQMVTKTVIPDVPINNALITMYARCGAIVEAR 384
                 S++ ++S  +D +   +      ++ ++    D  + N++IT Y  CG I +A+
Sbjct: 333 KVGLIDSVI-VASAFIDAYSKCRNPNDACKLFSELKAYDTVLLNSMITAYCNCGRIRDAK 391

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            IFE M   K+++SWN++I G A + +  EAL++F  M    +     +  SV+SACA  
Sbjct: 392 NIFETMP-SKSLISWNSIIVGLAQNAYPLEALDVFGKMNKLDLRMDRFSLASVISACACI 450

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
             +E G Q F   +   G+E       SLVD   + G +E+   L   M  + D+  W +
Sbjct: 451 SSLELGEQVFARAIIT-GLESDQAVSTSLVDFYCKCGFIENGRKLFDSM-IKTDEVSWNS 508

Query: 505 LL 506
           +L
Sbjct: 509 ML 510



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 136/239 (56%), Gaps = 10/239 (4%)

Query: 206 NSMIMCYAKAGDVVS-AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDT 264
           N ++  YA+ G  ++ A  +F++M ER+ FSWNTMI GY+ V D E +  LF  MP  + 
Sbjct: 45  NRLLQMYARCGGTMTDAHNLFDEMPERNCFSWNTMIEGYMRVGDKERSLKLFDLMPQKND 104

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ-- 322
            +WN ++SG+A+ G L++A   F  MP++N V+WNSMI G   N     A+ LF ++   
Sbjct: 105 YSWNVVISGFAKAGELDVAKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSN 164

Query: 323 -VEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAI 380
            +E    D    +S++   + +  +  G Q+H +++   V  D  + ++LI +YA+CG +
Sbjct: 165 PLEKSCGDTFVLASVIGACADLGAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHL 224

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
             A  + + M  + +  S +A+I G A+ G  ++A+ +F++    K  P ++ + S++S
Sbjct: 225 DTANYVLKMMDEVDD-FSLSALIMGYANCGRMSDAVRIFRT----KSNPCFVVWNSLIS 278



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 20/224 (8%)

Query: 346 LHLGMQIHQMVTKT--VIPDVPINNALITMYARC-GAIVEARIIFEEMKLLKNVVSWNAM 402
           +H G Q+H +  K   +   V + N L+ MYARC G + +A  +F+EM   +N  SWN M
Sbjct: 21  IHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTDAHNLFDEMP-ERNCFSWNTM 79

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I G    G    +L+LF  M          ++  V+S  A AG ++  ++ F  M    G
Sbjct: 80  IEGYMRVGDKERSLKLFDLMPQ----KNDYSWNVVISGFAKAGELDVAKKLFNEMPRRNG 135

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP------DKAVWGALLGACRVHNNVE 516
           +      + S++    R+G   +A+ L K +   P      D  V  +++GAC     +E
Sbjct: 136 VA-----WNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACADLGAIE 190

Query: 517 LA-QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
              QV A  LM     +S     L N+YA  G  D AN V  +M
Sbjct: 191 YGKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVLKMM 234


>gi|413917533|gb|AFW57465.1| hypothetical protein ZEAMMB73_932577 [Zea mays]
          Length = 677

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 199/603 (33%), Positives = 345/603 (57%), Gaps = 40/603 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y +  + A AR +FD+MP+R+ VSWN ++S Y+   G+G    A  LF   P ++ 
Sbjct: 76  LLTAYAEGGDFASARLVFDDMPRRNAVSWNALLSLYL---GAGRPAAAHALFCKTPAKNA 132

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR--NVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           V++  +I+G A+ G + EA  ++  MP R  + V  NAMI G+L+ G++  A+  FD M 
Sbjct: 133 VSYGVIITGLARAGMLREAQAVYGEMPPRLRDPVGSNAMILGYLRAGEIDMALRVFDTMA 192

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
            RD  S S++V GL + G + EA R+      R       V ++ +++ GY + G   E 
Sbjct: 193 ARDVISWSSMVDGLCKYGTVSEARRLFEAMPERN------VVSWTSMVRGYVKCGMYREG 246

Query: 179 RKLF-----DKIPVN----------CDR----GEG--------NVRFKRNIVSWNSMIMC 211
             LF     + + VN          C +    GEG         + F  +I    S+I+ 
Sbjct: 247 LLLFLDMRREGVQVNAITLSVVLDGCAQASLVGEGIQVHCLMTRMGFVTDIFLDGSLIIM 306

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMV 271
           Y++ G +V AR +F  M ++D  SWN++I+GY+    +E+A  LF  MP  D ++W ++V
Sbjct: 307 YSRFGWMVDARRVFAFMKQKDIVSWNSLITGYVQNNMIEDAHVLFKLMPERDAISWTSVV 366

Query: 272 SGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
            G+A  G +  +++ F++MP K+ ++W ++I+    N ++   ++ F QM  EG +P+  
Sbjct: 367 VGFANRGWMRESVELFEQMPVKDDIAWTAVISSFIANGNHVSVVRWFCQMSQEGCRPNTA 426

Query: 332 TFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEM 390
            FS +LS  + +  L+ G+Q H   V    I D  ++ +L+TMYA+CG + EA  +F  +
Sbjct: 427 AFSCLLSALASLAMLNQGLQAHAYAVNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCI 486

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
           +   ++V+ N+MI   A HG A +AL+LF  M+     P ++TF+ +L+ACA AGLV++G
Sbjct: 487 RN-PSLVAINSMISAFAQHGLAEDALKLFNRMQYDGQRPNHVTFLGILTACARAGLVQQG 545

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
             +F+SM + YGI+P  +H+  +V+++G  G L++A+++I  MP +     W ALL +  
Sbjct: 546 YNYFESMRSVYGIQPNPDHYTCMVNLLGHAGFLDEALEMINSMPQKDYPDAWAALLSSSS 605

Query: 511 VHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGY 570
           +H+N++LA++AA+ L++++P ++T Y +L NM++  G   D   V++   SN   K  GY
Sbjct: 606 LHSNLDLAKLAAQRLLEIDPYDTTAYRVLTNMFSSAGLKGDEEMVKVAQLSNMASKRPGY 665

Query: 571 SWV 573
           S +
Sbjct: 666 SLI 668



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 202/405 (49%), Gaps = 55/405 (13%)

Query: 54  IMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEF 113
           ++P R  +  N +++ Y + G +++A +LF+ MP R+V+SW A+++ + + GD A+A   
Sbjct: 35  VLPNRAHL--NALLTSYGRRGRIQDAQQLFDRMPRRDVISWTALLTAYAEGGDFASARLV 92

Query: 114 FDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           FD MP R++ S +AL+S  +  G    A  +  K  ++         +Y  +I G  + G
Sbjct: 93  FDDMPRRNAVSWNALLSLYLGAGRPAAAHALFCKTPAKN------AVSYGVIITGLARAG 146

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
            + EA+ ++ ++P             R+ V  N+MI+ Y +AG++  A  +F+ M  RD 
Sbjct: 147 MLREAQAVYGEMPPRL----------RDPVGSNAMILGYLRAGEIDMALRVFDTMAARDV 196

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
            SW++M+ G      + EA  LF  MP  + ++W +MV GY + G               
Sbjct: 197 ISWSSMVDGLCKYGTVSEARRLFEAMPERNVVSWTSMVRGYVKCGM-------------- 242

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
                            Y   + LF+ M+ EG + +  T S +L   +    +  G+Q+H
Sbjct: 243 -----------------YREGLLLFLDMRREGVQVNAITLSVVLDGCAQASLVGEGIQVH 285

Query: 354 QMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
            ++T+   + D+ ++ +LI MY+R G +V+AR +F  MK  K++VSWN++I G   +   
Sbjct: 286 CLMTRMGFVTDIFLDGSLIIMYSRFGWMVDARRVFAFMK-QKDIVSWNSLITGYVQNNMI 344

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
            +A  LFK M         I++ SV+   A+ G + E  + F+ M
Sbjct: 345 EDAHVLFKLMPERDA----ISWTSVVVGFANRGWMRESVELFEQM 385



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 150/336 (44%), Gaps = 12/336 (3%)

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
           VR   N    N+++  Y + G +  A+++F++M  RD  SW  +++ Y    D   A  +
Sbjct: 33  VRVLPNRAHLNALLTSYGRRGRIQDAQQLFDRMPRRDVISWTALLTAYAEGGDFASARLV 92

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           F  MP  + ++WNA++S Y   G    A   F + P KN VS+  +I G         A 
Sbjct: 93  FDDMPRRNAVSWNALLSLYLGAGRPAAAHALFCKTPAKNAVSYGVIITGLARAGMLREAQ 152

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYA 375
            ++ +M      P       +  + +G +D+ L     ++       DV   ++++    
Sbjct: 153 AVYGEMPPRLRDPVGSNAMILGYLRAGEIDMAL-----RVFDTMAARDVISWSSMVDGLC 207

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           + G + EAR +FE M   +NVVSW +M+ G    G   E L LF  MR   V    IT  
Sbjct: 208 KYGTVSEARRLFEAMP-ERNVVSWTSMVRGYVKCGMYREGLLLFLDMRREGVQVNAITLS 266

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
            VL  CA A LV EG Q    ++   G    I    SL+ +  R G + DA  +   M  
Sbjct: 267 VVLDGCAQASLVGEGIQ-VHCLMTRMGFVTDIFLDGSLIIMYSRFGWMVDARRVFAFMK- 324

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
           + D   W +L+     +N +E A V    L K+ PE
Sbjct: 325 QKDIVSWNSLITGYVQNNMIEDAHV----LFKLMPE 356


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 183/513 (35%), Positives = 288/513 (56%), Gaps = 42/513 (8%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +I  Y K G+  +A ++F+ M  RN+ SWN M+SGF+++G +  A   FD MP RD  
Sbjct: 86  NHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVV 145

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S + +V G  Q+G L EA     +   R  G +    ++  L+    +  +++  ++   
Sbjct: 146 SWNTMVIGYAQDGNLHEALWFFKEL--RRSGIKFNEFSFAGLLTACVKSRQLQLNQQAHG 203

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           ++ V          F  N+V   S+I  YAK G + SA+  F++M  +D   W T+ISGY
Sbjct: 204 QVLV--------AGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGY 255

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
             + DME A  LF +MP  + ++W A+++GY + G+ +LALD F++M             
Sbjct: 256 AKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKM------------- 302

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIP 362
                          I M+V   KP++ TFSS L  S+ I  L  G QIH  M+   V P
Sbjct: 303 ---------------IAMRV---KPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRP 344

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           +  + ++LI MY++ G++  +  +F      ++ V WN MI   A HG   +AL++   M
Sbjct: 345 NAIVTSSLIDMYSKSGSLEASERVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDM 404

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
             F+V P   T + +L+AC+H+GLVEEG + F+SM  ++GI P  EH+A L+D++GR G 
Sbjct: 405 IKFRVHPNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGC 464

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
            ++ M  I+ MPFEPDK +W A+LG CR+H N EL + AAE L+K++PE+S PY+LL ++
Sbjct: 465 FKELMSKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAAEELIKLDPESSAPYILLSSI 524

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           YAD G+W+   ++R +MK   + K    SW++ 
Sbjct: 525 YADHGKWELVEKLRGIMKKRRVNKEKAVSWIEI 557



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 128/313 (40%), Gaps = 45/313 (14%)

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           S+++   T  +   A+     +  +G +      +S+L        L  G  IH+ +  T
Sbjct: 16  SLLSRHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKIT 75

Query: 360 VI--PDVPINNALITMYARCGAIVEARIIFEEMKLL------------------------ 393
               P+  ++N LI MY +CG  ++A  +F++M L                         
Sbjct: 76  GFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVV 135

Query: 394 ------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
                 ++VVSWN M+ G A  G   EAL  FK +R   +     +F  +L+AC  +  +
Sbjct: 136 FDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVKSRQL 195

Query: 448 EEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +  +Q H + +V   G    +    S++D   + G++E A      M  + D  +W  L+
Sbjct: 196 QLNQQAHGQVLVA--GFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVK-DIHIWTTLI 252

Query: 507 GACRVHNNVELAQVAAEALMKVEPE-NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
                  ++E    AA+ L +  PE N   +  L   Y   G  D A ++   M +  + 
Sbjct: 253 SGYAKLGDME----AADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRV- 307

Query: 566 KPTGYSWVDFSPC 578
           KP  ++   FS C
Sbjct: 308 KPEQFT---FSSC 317


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 160/379 (42%), Positives = 243/379 (64%), Gaps = 3/379 (0%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  ++    +++  Y  AG +V AR +F++M ERD F+W TMIS +    DM  A  LF 
Sbjct: 41  FDSHVFVQTALVDFYGNAGKIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFD 100

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           +MP  +T +WNAM+ GY+++ N+E A   F +MP ++++SW +MIA    NK +  A+ +
Sbjct: 101 EMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAV 160

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYAR 376
           F +MQ  G  PD  T ++I+S  + +  L LG +IH    +     DV I +ALI MYA+
Sbjct: 161 FNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAK 220

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG++ ++ ++F +++  KN+  WN++I G A HG+A EAL +F  M+  K+ P  +TFIS
Sbjct: 221 CGSLDKSLVVFFKLRK-KNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFIS 279

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           VL AC HAGLVEEGR+ F SM  ++ I P IEH+  +VD++G+ G LEDA++L++ M  E
Sbjct: 280 VLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRME 339

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
           P+  +WGALLG C++H N+++AQVA      +EP NS  Y LL NMYA+V RW +   +R
Sbjct: 340 PNSVIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIR 399

Query: 557 LLMKSNNIKKPT-GYSWVD 574
             MK   ++K + G SW++
Sbjct: 400 ATMKELGVEKTSPGSSWIE 418



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 169/356 (47%), Gaps = 59/356 (16%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
             ++  Y   G++ EA R+F+ M  R+V +W  MIS   + GD+++A + FD MP R++A
Sbjct: 49  TALVDFYGNAGKIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTA 108

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S                                     +N +I GY +   VE A  LF 
Sbjct: 109 S-------------------------------------WNAMIDGYSRLRNVESAELLFS 131

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTM 239
           ++P             R+I+SW +MI CY++      A  +F +M    ++ D  +  T+
Sbjct: 132 QMP------------NRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATI 179

Query: 240 ISGYIHV--LDMEEASNLF-VKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           IS   H+  LD+ +  +L+ ++M    D    +A++  YA+ G+L+ +L  F ++ +KNL
Sbjct: 180 ISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNL 239

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHLGMQIH 353
             WNS+I G   +   E A+ +F +MQ E  KP+  TF S+L     +G+V+      + 
Sbjct: 240 FCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLS 299

Query: 354 QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
                ++ P++     ++ +  + G + +A  +   M++  N V W A++GGC  H
Sbjct: 300 MSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLH 355



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 163/329 (49%), Gaps = 33/329 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y    ++ +AR++FDEM +RDV +W  MIS  + +R +G +  AR LFD MP R+ 
Sbjct: 51  LVDFYGNAGKIVEARRVFDEMSERDVFAWTTMIS--VHAR-TGDMSSARQLFDEMPVRNT 107

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN +I GY++   +E A  LF+ MP R+++SW  MI+ + QN     A+  F+ M   
Sbjct: 108 ASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTN 167

Query: 121 ----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRV 175
               D  +++ ++S     G LD    + +      + G DL V   + LI  Y + G +
Sbjct: 168 GIDPDEVTMATIISACAHLGALDLGKEIHLYA---MEMGFDLDVYIGSALIDMYAKCGSL 224

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LER 231
           +++  +F K+             K+N+  WNS+I   A  G    A  +F +M    ++ 
Sbjct: 225 DKSLVVFFKLR------------KKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKP 272

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDF 286
           +  ++ +++    H   +EE    F+ M       P+   +  MV    + G LE AL+ 
Sbjct: 273 NGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALEL 332

Query: 287 FKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
            + M  + N V W +++ GC+ +++ + A
Sbjct: 333 VRSMRMEPNSVIWGALLGGCKLHRNLKIA 361


>gi|302760807|ref|XP_002963826.1| hypothetical protein SELMODRAFT_79356 [Selaginella moellendorffii]
 gi|300169094|gb|EFJ35697.1| hypothetical protein SELMODRAFT_79356 [Selaginella moellendorffii]
          Length = 535

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 179/529 (33%), Positives = 293/529 (55%), Gaps = 35/529 (6%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G ++EAR  FD MP +D V+W  ++S YA+ G +E+A  LF S+P +++   NAM+  + 
Sbjct: 14  GNVQEARKFFDSMPLQDSVSWTIMVSAYAQGGHIEQAKNLFESLPWKSLACENAMLQAYS 73

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
            NGD+ NA   FDRM  RD  S + ++    QNG   +A  +  +   +       + ++
Sbjct: 74  LNGDLENAKLVFDRMTKRDVVSWTTMIGAYAQNGYAFDAKSLFDRFERKN------IISW 127

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
             ++  Y Q    + AR++F+++P            + ++ SWN ++  YA  G + SA+
Sbjct: 128 TAMVHAYSQNKSFDLAREMFERMP------------QHDVFSWNILLSAYAHNGHLESAK 175

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
             FE+M  RD  +WN++I+ +     +EEA  LF  MP P+T  WN M+   AQ  +L++
Sbjct: 176 IAFERMPSRDVVAWNSIIAFFSQKGKLEEAKELFHLMPEPNTAAWNVMIQANAQAWHLDV 235

Query: 283 ALDFFKRMPQKNLVSWNSM---------IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           A   F +MP ++++SW ++         + GC+     E A+ +F  M + G  PD  T+
Sbjct: 236 AKGLFDQMPSRDVISWTTLMNSYADMSNLDGCQ-----ESAMDVFRLMDLHGVSPDSVTY 290

Query: 334 SSILSMSSGIVDLHLGMQ-IHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMK 391
            +I    S I +   G   I  +V   ++ D V + NA +TMY R G    A  +F++M 
Sbjct: 291 IAIFDACSRIANAEEGSAFIASIVHPGILQDSVVVGNAALTMYGRSGLAAGAWSVFQQMP 350

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
           + ++ VSWNAM+   A +G    AL++F +M    ++P  ITF++VLSAC+HAGL+   R
Sbjct: 351 V-RDSVSWNAMLTAFARNGHGEAALDVFLAMELEGLVPDIITFVNVLSACSHAGLLHRAR 409

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
            +F S+  +YG+ P  +H+  L D++ R GRL +A +L+  MPFEP+   W ALLGACR 
Sbjct: 410 GYFHSISRDYGLTPIYDHYVCLTDLLARSGRLVEAEELVNSMPFEPNYEAWMALLGACRS 469

Query: 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
           H +V     AA   ++ + +  +PY+LL ++YA+ G  DD   +R  M+
Sbjct: 470 HGDVRRGNRAAGFFVQADVDAESPYILLSHLYAEAGSKDDVLVIRKAMR 518



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 135/456 (29%), Positives = 219/456 (48%), Gaps = 67/456 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+S Y +   + +A+ LF+ +P + +   N M+  Y     +G LE A+ +FD M +RD 
Sbjct: 37  MVSAYAQGGHIEQAKNLFESLPWKSLACENAMLQAY---SLNGDLENAKLVFDRMTKRDV 93

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W T+I  YA+ G   +A  LF+    +N++SW AM+  + QN     A E F+RMP  
Sbjct: 94  VSWTTMIGAYAQNGYAFDAKSLFDRFERKNIISWTAMVHAYSQNKSFDLAREMFERMPQH 153

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  S + L+S    NG L+ A     +  SR     D+V A+N++I  + Q+G++EEA++
Sbjct: 154 DVFSWNILLSAYAHNGHLESAKIAFERMPSR-----DVV-AWNSIIAFFSQKGKLEEAKE 207

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF  +P            + N  +WN MI   A+A  +  A+ +F+QM  RD  SW T++
Sbjct: 208 LFHLMP------------EPNTAAWNVMIQANAQAWHLDVAKGLFDQMPSRDVISWTTLM 255

Query: 241 SGYIHVLDM----EEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDF------ 286
           + Y  + ++    E A ++F  M      PD++T+ A+    ++I N E    F      
Sbjct: 256 NSYADMSNLDGCQESAMDVFRLMDLHGVSPDSVTYIAIFDACSRIANAEEGSAFIASIVH 315

Query: 287 ------------------------------FKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
                                         F++MP ++ VSWN+M+     N   E A+ 
Sbjct: 316 PGILQDSVVVGNAALTMYGRSGLAAGAWSVFQQMPVRDSVSWNAMLTAFARNGHGEAALD 375

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMY 374
           +F+ M++EG  PD  TF ++LS  S    LH        +++   + P       L  + 
Sbjct: 376 VFLAMELEGLVPDIITFVNVLSACSHAGLLHRARGYFHSISRDYGLTPIYDHYVCLTDLL 435

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           AR G +VEA  +   M    N  +W A++G C SHG
Sbjct: 436 ARSGRLVEAEELVNSMPFEPNYEAWMALLGACRSHG 471



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 141/314 (44%), Gaps = 16/314 (5%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           NS +      G+V  AR+ F+ M  +D+ SW  M+S Y     +E+A NLF  +P     
Sbjct: 4   NSALQLQNLCGNVQEARKFFDSMPLQDSVSWTIMVSAYAQGGHIEQAKNLFESLPWKSLA 63

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
             NAM+  Y+  G+LE A   F RM ++++VSW +MI     N     A  LF +     
Sbjct: 64  CENAMLQAYSLNGDLENAKLVFDRMTKRDVVSWTTMIGAYAQNGYAFDAKSLFDRF---- 119

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARI 385
           E+ +  ++++++   S      L     +M  +    DV   N L++ YA  G +  A+I
Sbjct: 120 ERKNIISWTAMVHAYSQNKSFDLA---REMFERMPQHDVFSWNILLSAYAHNGHLESAKI 176

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
            FE M   ++VV+WN++I   +  G   EA ELF  M      P    +  ++ A A A 
Sbjct: 177 AFERMP-SRDVVAWNSIIAFFSQKGKLEEAKELFHLMPE----PNTAAWNVMIQANAQAW 231

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE---PDKAVW 502
            ++  +  F  M +   I        S  D+    G  E AMD+ + M      PD   +
Sbjct: 232 HLDVAKGLFDQMPSRDVIS-WTTLMNSYADMSNLDGCQESAMDVFRLMDLHGVSPDSVTY 290

Query: 503 GALLGACRVHNNVE 516
            A+  AC    N E
Sbjct: 291 IAIFDACSRIANAE 304


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 208/623 (33%), Positives = 322/623 (51%), Gaps = 69/623 (11%)

Query: 4   GYVKRREMAKARKLFDEMPQRDVVSWNVMISGY---------------ISSRG------- 41
            Y K  ++  A +LFD+M QR+  SW V+I+G                + S+G       
Sbjct: 114 AYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFA 173

Query: 42  -SGFLEEARYLFDIMPERDCVTWNTVISG--------------YAKTGEMEEALRLFNSM 86
            SG L+    L D +   + V    VI G              YAK  E+E++ ++FN+M
Sbjct: 174 YSGILQICIGL-DSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTM 232

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAA 142
              NVVSWNAMI+GF  N    +A + F RM G     D+ +   +   +    ++++A 
Sbjct: 233 TEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAK 292

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQR-GRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            V    G   + G D      T ++    + G ++EAR +F+   + C       RF   
Sbjct: 293 EV---SGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITC-------RFN-- 340

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
              WN+MI  Y ++G    A E+F +M + D +  +       + +   +  +L  K+ H
Sbjct: 341 -APWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKV-H 398

Query: 262 PDTL----------TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
              +            NA+ + YA+ G+LE     F RM  ++L+SW S++       ++
Sbjct: 399 ARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEW 458

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNAL 370
           + AI++F  M+ EG  P++ TFSS+L   + +  L  G Q+H ++ K  +  D  I +AL
Sbjct: 459 DKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESAL 518

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           + MYA+CG + +A+ +F  +    + VSW A+I G A HG   +AL+LF+ M    V P 
Sbjct: 519 VDMYAKCGCLGDAKKVFNRIS-NADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPN 577

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            +TF+ VL AC+H GLVEEG Q+FK M   YG+ P +EH+A +VD++ R G L DAM+ I
Sbjct: 578 AVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFI 637

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
             MP EP++ VW  LLGACRVH NVEL ++AA+ ++  + ENS  YVLL N Y + G + 
Sbjct: 638 SRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYK 697

Query: 551 DANEVRLLMKSNNIKKPTGYSWV 573
           D   +R +MK   +KK  G SW+
Sbjct: 698 DGLSLRHVMKEQGVKKEPGCSWI 720



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 127/516 (24%), Positives = 238/516 (46%), Gaps = 39/516 (7%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           GFL ++++          V  N V   Y+K  +++ A RLF+ M  RN  SW  +I+G  
Sbjct: 92  GFLLKSKF----SNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLA 147

Query: 103 QNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
           +NG   +  EFF  M  +    D  + S ++   I    ++    V  +   R       
Sbjct: 148 ENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTF 207

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           V     L+  Y +   +E++ K+F            N   + N+VSWN+MI  +      
Sbjct: 208 VS--TALLNMYAKLQEIEDSYKVF------------NTMTEVNVVSWNAMITGFTSNDLY 253

Query: 219 VSAREIFEQML------ERDTFSWNTMISGYIH-VLDMEEASNLFVKMP-HPDTLTWNAM 270
           + A ++F +M+      +  TF       G +  V   +E S   +++    +TL   A+
Sbjct: 254 LDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTAL 313

Query: 271 VSGYAQIGNLELALDFFKR--MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           +   ++ G+L+ A   F    +  +    WN+MI+G   +   E A++LF +M       
Sbjct: 314 IDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYL 373

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARII 386
           D +T+ S+ +  + +  L LG ++H    K+   +  V I+NA+   YA+CG++ + R +
Sbjct: 374 DHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKV 433

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F  M+  ++++SW +++   +      +A+E+F +MR+  + P   TF SVL +CA+  L
Sbjct: 434 FNRME-DRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCL 492

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +E G+Q    ++ + G++      ++LVD+  + G L DA  +   +    D   W A++
Sbjct: 493 LEYGQQ-VHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAII 550

Query: 507 GACRVHNNVELAQVAAEALMK--VEPENSTPYVLLY 540
                H  V+ A      +++  VEP   T   +L+
Sbjct: 551 AGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLF 586



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 153/335 (45%), Gaps = 40/335 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVV--------SWNVMISGYISSRGSGFLEEARYLF 52
           MISGY++     KA +LF +M Q D+          +N + +    S G      AR + 
Sbjct: 346 MISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKV--HARAIK 403

Query: 53  DIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIE 112
             +        N V + YAK G +E+  ++FN M  R+++SW ++++ + Q  +   AIE
Sbjct: 404 SGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIE 463

Query: 113 FFDRMPGRDSA----SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
            F  M     A    + S+++        L+   +V    G  C  G D+ +   + +V 
Sbjct: 464 IFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVH---GIICKVGLDMDKCIESALVD 520

Query: 169 -YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y + G + +A+K+F++I  N D            VSW ++I  +A+ G V  A ++F +
Sbjct: 521 MYAKCGCLGDAKKVFNRIS-NAD-----------TVSWTAIIAGHAQHGIVDDALQLFRR 568

Query: 228 M----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIG 278
           M    +E +  ++  ++    H   +EE    F  M       P+   +  +V   +++G
Sbjct: 569 MVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVG 628

Query: 279 NLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
           +L  A++F  RMP + N + W +++  C  + + E
Sbjct: 629 HLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVE 663


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 190/523 (36%), Positives = 295/523 (56%), Gaps = 18/523 (3%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
            R+      +I+ ++   +M  A+ +FN +   +V+ +N +I   ++N +   A   F  
Sbjct: 46  HRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFE 105

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY--NTLIVGYGQRGR 174
           M      + +     L++        RV+    ++ +     +  +  N+LI  Y + G 
Sbjct: 106 MQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGL 165

Query: 175 --VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
             V  ARK+F+            V  +R+ VSWNSMI    K G++  AR +F++M ERD
Sbjct: 166 DGVAAARKVFE------------VMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERD 213

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           T SWNT++ GY+   +M  A  LF KMP  + ++W+ MV GY++ G++++A   F +MP 
Sbjct: 214 TVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPV 273

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           KNLV W  MI+G       + AI L+ QM+  G K D  T  SILS  +    L LG ++
Sbjct: 274 KNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRV 333

Query: 353 HQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H  + +T      P++NALI MYA+CG++  A  IF  M + K+VVSWNA+I G A HG 
Sbjct: 334 HASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGM-VRKDVVSWNAIIQGLAMHGH 392

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             +AL+LF  M+    +P  +TF+ VL AC HAG V+EG  +F +M  +YG+ P +EH+ 
Sbjct: 393 GEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYG 452

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            +VD++GR GRL++A  L+  MP EP+  +WG LLGACR+H+   LA+   + L+K E  
Sbjct: 453 CMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELS 512

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +S    +L N+YA  G WD+   +RL MKS +I+KP+G S ++
Sbjct: 513 DSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIE 555



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/292 (34%), Positives = 149/292 (51%), Gaps = 29/292 (9%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGY 70
           +A ARK+F+ M +RD VSWN MI G +     G L EAR LFD MPERD V+WNT++ GY
Sbjct: 168 VAAARKVFEVMAERDTVSWNSMIGGLVKV---GELGEARRLFDEMPERDTVSWNTILDGY 224

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
            K GEM  A  LF  MPARNVVSW+ M+ G+ + GD+  A   FD+MP ++    + ++S
Sbjct: 225 VKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMIS 284

Query: 131 GLIQNGELDEAARV---LVKCGSRCDGG---EDLVRAYNTLIVGYGQRGRVEEARKLFDK 184
           G  + G   +A  +   + + G + D G     L     + ++G G+R      R     
Sbjct: 285 GYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIER----- 339

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI 244
                       RFK +    N++I  YAK G + +A  IF  M+ +D  SWN +I G  
Sbjct: 340 -----------TRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLA 388

Query: 245 HVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
                E+A  LF +M      PD +T+  ++      G ++  L +F  M +
Sbjct: 389 MHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMER 440



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 135/479 (28%), Positives = 216/479 (45%), Gaps = 84/479 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+ +   R+M  A  +F+++   DV+ +N +I  ++  R S  L      F++     C
Sbjct: 55  LIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHV--RNSEPLLAFSVFFEMQDSGVC 112

Query: 61  V---------------TW-----------------------NTVISGYAKTG--EMEEAL 80
                            W                       N++I  Y K G   +  A 
Sbjct: 113 ADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAAR 172

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
           ++F  M  R+ VSWN+MI G ++ G++  A   FD MP RD+ S + ++ G ++ GE++ 
Sbjct: 173 KVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNA 232

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A  +  K  +R       V +++T+++GY + G ++ AR LFDK+PV            +
Sbjct: 233 AFELFEKMPARN------VVSWSTMVLGYSKAGDMDMARILFDKMPV------------K 274

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERD-TFSWNTMISGYIHVLDMEEASNL--FV 257
           N+V W  MI  YA+ G    A  ++ QM E    F   T+IS    +L     S L    
Sbjct: 275 NLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVIS----ILSACAVSGLLGLG 330

Query: 258 KMPHP---------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           K  H           T   NA++  YA+ G+LE AL  F  M +K++VSWN++I G   +
Sbjct: 331 KRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMH 390

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVD--LHLGMQIHQMVTKT-VIPD 363
              E A++LF +M+ EG  PD+ TF  +L   +  G VD  LH     H M     V P+
Sbjct: 391 GHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHY---FHAMERDYGVPPE 447

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           V     ++ +  R G + EA  +   M L  N + W  ++G C  H     A E+F  +
Sbjct: 448 VEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRL 506



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 179/364 (49%), Gaps = 50/364 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI G VK  E+ +AR+LFDEMP+RD VSWN ++ GY+    +G +  A  LF+ MP R+ 
Sbjct: 189 MIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVK---AGEMNAAFELFEKMPARNV 245

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP-- 118
           V+W+T++ GY+K G+M+ A  LF+ MP +N+V W  MISG+ + G   +AI  +++M   
Sbjct: 246 VSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEA 305

Query: 119 ------GRDSASLSAL-VSGLIQNGELDEAA--RVLVKCGSRCDGGEDLVRAYNTLIVGY 169
                 G   + LSA  VSGL+  G+   A+  R   KC +            N LI  Y
Sbjct: 306 GLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVS---------NALIDMY 356

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM- 228
            + G +E A  +F           G VR  +++VSWN++I   A  G    A ++F +M 
Sbjct: 357 AKCGSLENALSIF----------HGMVR--KDVVSWNAIIQGLAMHGHGEKALQLFSRMK 404

Query: 229 ---LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNL 280
                 D  ++  ++    H   ++E  + F  M       P+   +  MV    + G L
Sbjct: 405 GEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRL 464

Query: 281 ELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           + A      MP + N + W +++  C  +     A ++F ++ V+ E  D    S  LSM
Sbjct: 465 KEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRL-VKSELSD----SGNLSM 519

Query: 340 SSGI 343
            S I
Sbjct: 520 LSNI 523



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 147/366 (40%), Gaps = 75/366 (20%)

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
           ++ +  L R++F    +I+ +     M  A N+F ++  PD L +N ++   A + N E 
Sbjct: 39  QVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIR--AHVRNSEP 96

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
            L F                              +F +MQ  G   D  T+  +L   SG
Sbjct: 97  LLAF-----------------------------SVFFEMQDSGVCADNFTYPFLLKACSG 127

Query: 343 IVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCG--AIVEARIIFEEMKLLKNVVSW 399
            V + +   IH  V K     D+ + N+LI  Y +CG   +  AR +FE M   ++ VSW
Sbjct: 128 KVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMA-ERDTVSW 186

Query: 400 NAMIGGCASHGFATEALELFKSMRS-------------------------FKVLPT--YI 432
           N+MIGG    G   EA  LF  M                           F+ +P    +
Sbjct: 187 NSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVV 246

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK- 491
           ++ +++   + AG ++  R  F  M  +  +   I     ++      G  +DA++L   
Sbjct: 247 SWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTI-----MISGYAEKGLAKDAINLYNQ 301

Query: 492 ----GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV-LLYNMYADV 546
               G+ F+    +  ++L AC V   + L +    ++ +   + STP    L +MYA  
Sbjct: 302 MEEAGLKFDDGTVI--SILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKC 359

Query: 547 GRWDDA 552
           G  ++A
Sbjct: 360 GSLENA 365


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 189/558 (33%), Positives = 306/558 (54%), Gaps = 62/558 (11%)

Query: 29  WNVMISGYISSRGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEALRLFN 84
           WN +I  Y         +EA +L  +M E     D  T + V+   ++ G ++E +++  
Sbjct: 95  WNAIIKTYSHGHDP---KEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHG 151

Query: 85  SMP----ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
            +       ++   N +IS +++ G +  A + FDRMP RDS S                
Sbjct: 152 LLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVS---------------- 195

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
                                YN++I GY + GR++ AR +FD IP+           +R
Sbjct: 196 ---------------------YNSMIDGYVKGGRIDLARVVFDCIPLE----------ER 224

Query: 201 NIVSWNSMIMCYAKAGD-VVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
           N++SWNS+I  YA++ D ++ A ++F +M ERD  SWN+MI G +    ME+A  LF +M
Sbjct: 225 NLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRM 284

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
           P+ D ++W  M+ GYA+ G +++A   F  MP++++V++N+M+ G   N     A+ +F 
Sbjct: 285 PNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFY 344

Query: 320 QMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARC 377
            MQ +G    D  T    LS  + +  +  G+ IH+ + +     D  +  ALI MY++C
Sbjct: 345 GMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSKC 404

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G+I  A ++FE +K  K+V  WNA+IGG A HG    A +    M   +V P  ITFI +
Sbjct: 405 GSIENAMMVFENIKE-KSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGL 463

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           L+AC HAGLV+EG   F+ M   + +EP+++H+  +VDI+GR G +E+A + ++ MPFEP
Sbjct: 464 LNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEP 523

Query: 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
           +  +W +LL AC+ H +  + Q  AE LM+++  + + YVL  NMYA +G+W+D  +VR 
Sbjct: 524 NDVIWRSLLSACKTHESFNVGQPVAENLMRLDSPSPSSYVLASNMYAGLGKWNDVRKVRA 583

Query: 558 LMKSNNIKKPTGYSWVDF 575
           +MK  N+KK  G SW++ 
Sbjct: 584 MMKQKNLKKIPGCSWIEL 601



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 200/419 (47%), Gaps = 58/419 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ER 58
           +IS YVK   + +A ++FD MP+RD VS+N MI GY+     G ++ AR +FD +P  ER
Sbjct: 168 LISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVK---GGRIDLARVVFDCIPLEER 224

Query: 59  DCVTWNTVISGYAKTGE-MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           + ++WN++I GYA++ + +  A +LF  MP R+++SWN+MI G ++ G + +A   FDRM
Sbjct: 225 NLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRM 284

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P RD  S + ++ G  +NG +D A  +  +   R     D+V AYN ++ GY Q G   E
Sbjct: 285 PNRDIVSWANMIDGYAKNGRVDIARSLFDEMPER-----DVV-AYNAMMGGYVQNGYCME 338

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           A  +F  +     + +GN  F  +  +    +   A+ G +     I  + +E   FS +
Sbjct: 339 ALGIFYGM-----QSDGN--FLLDNATLLIALSAIAQLGHIDKGVAI-HRFIEEIGFSLD 390

Query: 238 -----TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
                 +I  Y     +E A  +F  +       WNA++ G A  G  ELA DF   M  
Sbjct: 391 GRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEME- 449

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
                                      +M+VE   PD  TF  +L+       +  GM  
Sbjct: 450 ---------------------------RMRVE---PDDITFIGLLNACGHAGLVKEGMMC 479

Query: 353 HQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            +++ +   V P +     ++ +  R G I EA+   EEM    N V W +++  C +H
Sbjct: 480 FELMRRVHKVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTH 538


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 191/516 (37%), Positives = 290/516 (56%), Gaps = 46/516 (8%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N ++  Y++ G  + A ++F+ +   N   W ++I G+++N     A   F +M     +
Sbjct: 39  NKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPIS 98

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
            L+  +S +     L   AR+     +R  GG+         + G+            FD
Sbjct: 99  VLNFTISSV-----LKALARL-----TRFKGGQ--------AVYGFA-----------FD 129

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           ++   C++         +IVSWN MI  Y     V  AR+ F++M ER+  SW +MI GY
Sbjct: 130 EM---CEK---------DIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGY 177

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNL-ELALDFFKRMPQKNLVSWNSMI 302
           +   DM EA  LF  MP  D  +WN MVSGY  IG+    A   F +MP KNLV+W++MI
Sbjct: 178 VKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMI 237

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTV 360
            G   N     A++LF + + +  KPD      I+S  S  GI+D    + IH  V  ++
Sbjct: 238 GGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESI-IHNYVGPSL 296

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
           + D+ +  +LI MYA+CG+I +A  +FE M   K+++ ++ MI   A+HG   +A+ LF 
Sbjct: 297 LSDLRVFTSLIDMYAKCGSIEKALQMFE-MAHPKDLLCYSTMIAALANHGLGRDAIFLFD 355

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M+   + P  +TF+ VL+AC H GLV+EGR++FK M  E+GI+P  +H+A +VD++GR 
Sbjct: 356 KMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRV 415

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G LE+A +LI+ MP  P   VWGALL ACRVH NV+LA+VAA  L K+EP+NS  Y+LL 
Sbjct: 416 GCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLS 475

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           N+YA  GRW    +VR  ++ + ++K  G SW++ S
Sbjct: 476 NIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWIELS 511



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 132/476 (27%), Positives = 218/476 (45%), Gaps = 73/476 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS-----SRGSGFLEEARYLFDIM 55
           +I GYV+ R+  +A  LF +M +  +   N  IS  +      +R  G      + FD M
Sbjct: 72  LIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFDEM 131

Query: 56  PERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
            E+D V+WN +ISGY     ++ A + F+ MP RNVVSW +MI G+++ GD+A A   FD
Sbjct: 132 CEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFD 191

Query: 116 RMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
            MP +D AS + +VSG +  G+           G+RC                       
Sbjct: 192 SMPVKDLASWNVMVSGYMDIGDYTN--------GARC----------------------- 220

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
                LFD++P+            +N+V+W++MI  YA+ G  + A E+FE+  E+D   
Sbjct: 221 -----LFDQMPM------------KNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKP 263

Query: 236 WNTMISGYIHVLD----MEEASNLFVKMPHPDTLT----WNAMVSGYAQIGNLELALDFF 287
             T I G I        ++ A ++      P  L+    + +++  YA+ G++E AL  F
Sbjct: 264 DETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMF 323

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVD 345
           +    K+L+ +++MIA    +     AI LF +MQ    KPD  TF  +L+  +  G+VD
Sbjct: 324 EMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVD 383

Query: 346 LHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
              G +  + +T+   + P       ++ +  R G + EA  +   M +  + V W A++
Sbjct: 384 --EGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALL 441

Query: 404 GGCASHGFATEALELFKSMRSFKVLP----TYITFISVLSACAHAGLVEEGRQHFK 455
             C  H      L    +   FK+ P     YI   ++ +A    G V + R   +
Sbjct: 442 AACRVH--CNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIR 495



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 8/217 (3%)

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           ++  +V     + N L+ +Y+R GA   A  +F+E+    N   W ++I G   +    E
Sbjct: 26  LIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEIT-QPNAYLWTSLIHGYVENRQYDE 84

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           A  LF  MR   +     T  SVL A A     + G+  +    +E   E  I  +  ++
Sbjct: 85  AFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFDEM-CEKDIVSWNMMI 143

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
              G + R++ A      MP E +   W +++       ++  AQV  +++     ++  
Sbjct: 144 SGYGNNDRVDIARKFFDRMP-ERNVVSWTSMICGYVKAGDMAEAQVLFDSM---PVKDLA 199

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
            + ++ + Y D+G  D  N  R L     +K    +S
Sbjct: 200 SWNVMVSGYMDIG--DYTNGARCLFDQMPMKNLVTWS 234


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 206/634 (32%), Positives = 327/634 (51%), Gaps = 78/634 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ER 58
           ++  Y K   +  AR+LF+E+P  D ++   +I+ Y +    G LE  R +F+  P   R
Sbjct: 54  LLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCAL---GNLELGREIFNGTPLYMR 110

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSM----------PARNVVS--------------- 93
           D V +N +I+GYA  G+   AL LF +M             +V+S               
Sbjct: 111 DSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQM 170

Query: 94  ----------------WNAMISGFLQNGD--------VANAIEFFDRMPGRDSASLSALV 129
                            NA++S +++           + +A + FD MP RD  + + ++
Sbjct: 171 HCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMI 230

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           +G ++N +L+ A  V           E+L  A+N +I GY   G  +EA  L  K+    
Sbjct: 231 TGYVRNDDLNGAREVFEAMV------ENLGAAWNAMISGYVHCGCFQEALTLCRKMRF-- 282

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD-----TFSW---NTMIS 241
                 +  + + +++ ++I   A  G     +++   +L+ +     +F     N +I+
Sbjct: 283 ------LGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALIT 336

Query: 242 GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
            Y     ++EA  +F  MP  + +TWNA++SGY   G +E A  FF+ MP KNL++   M
Sbjct: 337 LYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVM 396

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTV 360
           I+G   N   +  +KLF QM+++G +P    F+  L+  S +  L  G Q+H Q+V    
Sbjct: 397 ISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGY 456

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
              + + NA+I+MYA+CG +  A  +F  M  + ++VSWN+MI     HG   +A+ELF 
Sbjct: 457 ESSLSVGNAMISMYAKCGVVEAAESVFVTMPSV-DLVSWNSMIAALGQHGHGVKAIELFD 515

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M    V P  ITF++VL+AC+HAGLVE+GR +F SM+  YGI P  +H+A +VD+  R 
Sbjct: 516 QMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRA 575

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G    A  +I  MP +P   VW ALL  CR+H N++L   AAE L K+ P+N   YVLL 
Sbjct: 576 GMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLS 635

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N+YADVGRW+D  +VR LM+   ++K    SW++
Sbjct: 636 NIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIE 669



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 151/319 (47%), Gaps = 53/319 (16%)

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP--QKN 294
           N ++  Y    ++  A  LF ++P+PD +    +++ Y  +GNLEL  + F   P   ++
Sbjct: 52  NRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV--DLHLGMQI 352
            V +N+MI G   N D   A++LF  M+ +  +PD  TF+S+LS     V  +   G Q+
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCG-QM 170

Query: 353 HQMVTKTVIPDV--PINNALITMYAR--------CGAIVEARIIFEEM------------ 390
           H  V KT +  V   + NAL+++Y +        C A+V AR +F+EM            
Sbjct: 171 HCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMI 230

Query: 391 -----------------KLLKNV-VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
                             +++N+  +WNAMI G    G   EAL L + MR   +    I
Sbjct: 231 TGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDI 290

Query: 433 TFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFAS----LVDIVGRHGRLEDAM 487
           T+ +++SACA+ G  + G+Q H   + NE  + P      S    L+ +  ++ ++++A 
Sbjct: 291 TYTTIISACANVGSFQMGKQMHAYILKNE--LNPNHSFCLSVSNALITLYCKNNKVDEAR 348

Query: 488 DLIKGMPFEPDKAVWGALL 506
            +   MP   +   W A+L
Sbjct: 349 KIFYAMPVR-NIITWNAIL 366


>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1329

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 180/510 (35%), Positives = 285/510 (55%), Gaps = 45/510 (8%)

Query: 58   RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
            ++C   N  I+  +    ++ A+     M   NV  +NA+I GF+       ++EF+ RM
Sbjct: 810  QNCYLMNQFITACSSFNRLDLAVSFMTQMQKPNVFVYNALIKGFVTCSHPIRSLEFYVRM 869

Query: 118  PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
              RDS S S+                 LV+  +   G  + ++A+   I  +G       
Sbjct: 870  L-RDSVSPSSYTYS------------SLVQASAFASGFGESLQAH---IWKFG------- 906

Query: 178  ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
                                F  ++    ++I  Y+ +G +  AR++F++M ERD  +W 
Sbjct: 907  --------------------FGFHVQIQTTLIGFYSASGRIREARKVFDEMPERDDVTWT 946

Query: 238  TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
            TM+S Y  VLDM+ A++L  +MP  +  TWN ++ GY ++GNLELA   F +MP K+++S
Sbjct: 947  TMVSAYRQVLDMDSANSLANQMPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIIS 1006

Query: 298  WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MV 356
            W +MI G   NK Y  AI +F +M  EG  PD  T S+++S  + +  L +G ++H   V
Sbjct: 1007 WTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTV 1066

Query: 357  TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
                + DV I +AL+ MY++CG++  A ++F  +   KN+  WN++I G A+HGFA EAL
Sbjct: 1067 QNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK-KNLFCWNSIIEGLAAHGFAQEAL 1125

Query: 417  ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
            ++F  M    V P  +TF+SV +AC HAGLVEEGR+ ++SM+++Y I   +EH+  +V +
Sbjct: 1126 KMFAKMEMESVKPNTVTFVSVFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHL 1185

Query: 477  VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
              + G + +A++LI  M FEP+  +WGALL  CR+H N+E+A++A   LM +EP NS  Y
Sbjct: 1186 FSKAGLIYEALELIGSMEFEPNAVIWGALLDGCRIHKNLEIAEIAFNKLMILEPMNSGYY 1245

Query: 537  VLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
             LL +MYA+  RW D  E+R  M+   I+K
Sbjct: 1246 FLLVSMYAEQNRWRDVAEIRGRMRELGIEK 1275



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 164/340 (48%), Gaps = 37/340 (10%)

Query: 1    MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
            +I  Y     + +ARK+FDEMP+RD V+W  M+S Y   R    ++ A  L + MPE++ 
Sbjct: 917  LIGFYSASGRIREARKVFDEMPERDDVTWTTMVSAY---RQVLDMDSANSLANQMPEKNE 973

Query: 61   VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
             TWN +I GY + G +E A  LFN MP ++++SW  MI+G+ +N     AI  F +M   
Sbjct: 974  ATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVFYKMMEE 1033

Query: 121  ----DSASLSALVSGLIQNGELD---EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
                D  ++S ++S     G L+   E     V+ G   D     V   + L+  Y + G
Sbjct: 1034 GIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLD-----VYIGSALVDMYSKCG 1088

Query: 174  RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----L 229
             +E A  +F  +P            K+N+  WNS+I   A  G    A ++F +M    +
Sbjct: 1089 SLERALLVFFNLP------------KKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESV 1136

Query: 230  ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN-----AMVSGYAQIGNLELAL 284
            + +T ++ ++ +   H   +EE   ++  M    ++  N      MV  +++ G +  AL
Sbjct: 1137 KPNTVTFVSVFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEAL 1196

Query: 285  DFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
            +    M  + N V W +++ GC  +K+ E A   F ++ +
Sbjct: 1197 ELIGSMEFEPNAVIWGALLDGCRIHKNLEIAEIAFNKLMI 1236


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 179/486 (36%), Positives = 278/486 (57%), Gaps = 22/486 (4%)

Query: 95  NAMISGFLQNGDVANAIEFFDRMP--GRDSASLSALVSGLIQNG--ELDEAARVLVKCGS 150
           N ++  +  N     A+  F  MP   RD+ + S L+  L   G   +  A   + K GS
Sbjct: 176 NTLLRAYALNSLPHAALAVFVDMPLRQRDTFTYSFLIKALATAGVTPVRAAHTHVFKLGS 235

Query: 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
             D         N LI  Y +   + +A+K+FD++              R++VSWN+ + 
Sbjct: 236 VED-----TFVGNALIDAYSKNDGLSDAKKVFDEMTT------------RDVVSWNTAMA 278

Query: 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAM 270
              + G+V +AR +F++M E+DT SWNTM+ GY    + EEA  LF +MP  + ++W+ +
Sbjct: 279 AMVRKGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTV 338

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
           VS Y + G++E+A   F +MP KNLV+W  M++ C        A +LF +M+    + D 
Sbjct: 339 VSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDV 398

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEE 389
               SIL+  +    L LG +IH+ V +  +     + NAL+ M+ +CG +  A  IF+ 
Sbjct: 399 VAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDT 458

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
             + K+ VSWN +IGG A HG   +AL LF  M+     P  +T I+VLSAC H GLVEE
Sbjct: 459 EIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEE 518

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           GR+ F +M  +YGI+P IEH+  +VD++GR G +++A+D+IK MP+EP++ +WG+LL AC
Sbjct: 519 GRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSAC 578

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
           R+H NVE A++AA  L  ++P N+  Y +L N+YA+ G+W D  + R+ MK    +K  G
Sbjct: 579 RLHKNVEYAELAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAG 638

Query: 570 YSWVDF 575
            SW++ 
Sbjct: 639 SSWIEL 644



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 177/356 (49%), Gaps = 55/356 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K   ++ A+K+FDEM  RDVVSWN  ++  +     G ++ AR +FD MPE+D 
Sbjct: 245 LIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRK---GEVDAARSMFDEMPEKDT 301

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT++ GYAK GE EEA  LF  MP RNVVSW+ ++S + + GD+  A   FD+MP +
Sbjct: 302 VSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAK 361

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  + + +VS   Q G + EA R+  +        E  V A  +++    + G +   ++
Sbjct: 362 NLVTWTIMVSACAQKGLVGEAGRLFTEMKEA--AIELDVVAVVSILAACAESGCLALGKR 419

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE-QMLERDTFSWNTM 239
           +         R     +  R+ +  N+++  + K G V  A  IF+ +++E+D+ SWN +
Sbjct: 420 IH--------RHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNII 471

Query: 240 ISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIG----------NLEL--- 282
           I G+      E+A NLF +M     HPD +T   ++S    +G          N+E    
Sbjct: 472 IGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYG 531

Query: 283 -----------------------ALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
                                  A+D  K MP + N V W S+++ C  +K+ E A
Sbjct: 532 IKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLHKNVEYA 587



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 194/409 (47%), Gaps = 31/409 (7%)

Query: 14  ARKLFDEMP--QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYA 71
           A  +F +MP  QRD  +++ +I    ++  +       ++F +    D    N +I  Y+
Sbjct: 191 ALAVFVDMPLRQRDTFTYSFLIKALATAGVTPVRAAHTHVFKLGSVEDTFVGNALIDAYS 250

Query: 72  KTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSG 131
           K   + +A ++F+ M  R+VVSWN  ++  ++ G+V  A   FD MP +D+ S + ++ G
Sbjct: 251 KNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKDTVSWNTMLDG 310

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
             + GE +EA  +  +   R       V +++T++  Y ++G +E AR +FDK+P     
Sbjct: 311 YAKAGEAEEAFELFQRMPGRN------VVSWSTVVSAYCKKGDMEMARVIFDKMPA---- 360

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIH-- 245
                   +N+V+W  M+   A+ G V  A  +F +M    +E D  +  ++++      
Sbjct: 361 --------KNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESG 412

Query: 246 VLDMEEASNLFVKMPH--PDTLTWNAMVSGYAQIGNLELALDFF-KRMPQKNLVSWNSMI 302
            L + +  +  V+       TL  NA++  + + G +  A   F   + +K+ VSWN +I
Sbjct: 413 CLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIII 472

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTV 360
            G   +   E A+ LF QM+ +G  PD  T  ++LS  +  G+V+       +      +
Sbjct: 473 GGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGI 532

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            P++     ++ +  R G I EA  + + M    N V W +++  C  H
Sbjct: 533 KPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLH 581


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 197/583 (33%), Positives = 313/583 (53%), Gaps = 60/583 (10%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y K   +A ARK F ++   +V S+N +I+ Y           A  LFD +PE D V++N
Sbjct: 53  YSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLI---AHQLFDQIPEPDLVSYN 109

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
           T+IS YA  GE   AL LF+ M    +                             D  +
Sbjct: 110 TLISAYADCGETAPALGLFSGMREMGL---------------------------DMDXFT 142

Query: 125 LSALVSGLIQN-GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           LSA+++    + G + +   V V       G +  V   N L+  YG+ G +++A+++F 
Sbjct: 143 LSAVITACCDDVGLIGQLHSVAVS-----SGFDSYVSVNNALLTYYGKNGDLDDAKRVF- 196

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTM 239
                   G G +   R+ VSWNSMI+ Y +  +   A  +F++M+ R    D F+  ++
Sbjct: 197 -------YGMGGI---RDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASV 246

Query: 240 ISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQI-GNLELALDFFKRMPQKN 294
           ++ +  + D+        ++     H ++   + ++  Y++  G +      F+ + + +
Sbjct: 247 LTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPD 306

Query: 295 LVSWNSMIAGCETNKDY-EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           LV WN+M++G   N+++ E A++ F QMQ  G +P+  +F  ++S  S +     G QIH
Sbjct: 307 LVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIH 366

Query: 354 QMVTKTVIPD--VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
            +  K+ IP   + ++NALI MY++CG + +AR +F+ M    N VS N+MI G A HG 
Sbjct: 367 SLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGYAQHGI 425

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             E+L LF+ M   ++ PT ITFISVLSACAH G VEEG  +F  M  ++ IEP  EH++
Sbjct: 426 EMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYS 485

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            ++D++GR G+L +A +LI  MPF P    W +LLGACR H N+ELA  AA  ++++EP 
Sbjct: 486 CMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPS 545

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N+ PYV+L NMYA  GRW++   VR  M+   +KK  G SW++
Sbjct: 546 NAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIE 588



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 113/490 (23%), Positives = 195/490 (39%), Gaps = 122/490 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           +I+ Y K      A +LFD++P+ D+VS+N +IS Y      G    A  LF  M E   
Sbjct: 80  IIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYAD---CGETAPALGLFSGMREMGL 136

Query: 58  -RDCVTWNTVISG---------------------------------YAKTGEMEEALRLF 83
             D  T + VI+                                  Y K G++++A R+F
Sbjct: 137 DMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVF 196

Query: 84  NSMPA-RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVS-------- 130
             M   R+ VSWN+MI  + Q+ + + A+  F  M  R    D  +L+++++        
Sbjct: 197 YGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDL 256

Query: 131 --GLIQNGEL--------DEAARVLVKCGSRCDGG-------------EDLVRAYNTLIV 167
             GL  +G+L              L+   S+C GG              DLV  +NT++ 
Sbjct: 257 SGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLV-LWNTMVS 315

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
           GY Q    EE    F +  + C R    + ++ N  S+  +I   +        ++I   
Sbjct: 316 GYSQN---EE----FLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 228 MLERDTFSW-----NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
            L+ D  S      N +I+ Y    ++++A  LF +M   +T++ N+M++GYAQ G    
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEME 428

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           +L  F+ M ++ +                                P   TF S+LS  + 
Sbjct: 429 SLHLFQWMLERQIA-------------------------------PTSITFISVLSACAH 457

Query: 343 IVDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
              +  G     M+ +   + P+    + +I +  R G + EA  +   M      + W 
Sbjct: 458 TGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWA 517

Query: 401 AMIGGCASHG 410
           +++G C +HG
Sbjct: 518 SLLGACRTHG 527



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 158/373 (42%), Gaps = 58/373 (15%)

Query: 254 NLFVK--MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           +L++K  +P P T   N  +  Y++ G L  A   F+ +   N+ S+N++IA        
Sbjct: 32  SLYIKSFIP-PSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRP 90

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILS-------------MSSGIVDLHLGM-------- 350
             A +LF Q+     +PD  ++++++S             + SG+ ++ L M        
Sbjct: 91  LIAHQLFDQI----PEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAV 146

Query: 351 ------------QIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
                       Q+H +   +     V +NNAL+T Y + G + +A+ +F  M  +++ V
Sbjct: 147 ITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEV 206

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWN+MI     H   ++AL LF+ M    +     T  SVL+A      +  G Q F   
Sbjct: 207 SWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQ-FHGQ 265

Query: 458 VNEYGIEPRIEHFASLVDIVGR-HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE 516
           + + G        + L+D+  +  G + D   + + +  EPD  +W  ++       N E
Sbjct: 266 LIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEIT-EPDLVLWNTMVSG--YSQNEE 322

Query: 517 LAQVAAEALMKVEP----ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
             + A E   +++      N   +V + +  +++       ++  L   ++I  P+    
Sbjct: 323 FLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDI--PSNRIS 380

Query: 573 VD------FSPCG 579
           VD      +S CG
Sbjct: 381 VDNALIAMYSKCG 393


>gi|302760463|ref|XP_002963654.1| hypothetical protein SELMODRAFT_79648 [Selaginella moellendorffii]
 gi|300168922|gb|EFJ35525.1| hypothetical protein SELMODRAFT_79648 [Selaginella moellendorffii]
          Length = 580

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/533 (34%), Positives = 299/533 (56%), Gaps = 26/533 (4%)

Query: 1   MISGY-VKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           MI+ Y +     + AR  F+ MP+R+  +WN +I   ++S  +G LEEAR +FD +PE+ 
Sbjct: 35  MITAYFIPNSSASLARLAFERMPERNPYTWNFLI---VASSRNGHLEEARMVFDKLPEKS 91

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            VTWNT+IS YA+   + EA  LF+S+P ++V S N +++ + Q+G++A A E FD +P 
Sbjct: 92  AVTWNTMISCYAQKQCVSEAKCLFDSLPVKDVFSRNILLTAYAQSGNLAEAKEMFDSIPS 151

Query: 120 RDSASL--SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
            +  S+  + +++   QN +L EA  V  +   R       V ++N +I  Y   G +++
Sbjct: 152 EELTSICWNNILTAYSQNRQLPEAKSVFDRMTERT------VESWNAMITAYVGNGDLDD 205

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           A+ ++D I             ++N ++  SM+  YA+ G    A+ +F++M++ D  SW 
Sbjct: 206 AKLVYDMIT------------EKNSIAGTSMVNAYAQEGRTRQAKLVFDEMVDHDVVSWT 253

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           TM++ Y++   +  A NLF  MP  D L W+ MV  YA  GN+ELA    + MP K+  S
Sbjct: 254 TMLAAYLNNGHITSAENLFALMPARDYLAWSTMVLAYAIKGNIELATKLHEEMPVKDATS 313

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MV 356
           W ++I+G       + A+  F  M +EG +PDR T  S L   +    L  G  I +   
Sbjct: 314 WTALISGHARAGHSKQALAYFKLMDLEGIEPDRITLMSALEACASSTALAEGKTIFEGAA 373

Query: 357 TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
            + +  D  +  AL++M+ +CG + +AR +F  + L  NVVSW  +I   A  G  + A 
Sbjct: 374 ARGLDRDTFVGTALVSMFGKCGRLDQARALFNNLPL-PNVVSWTNIIVAYAQSGERSLAA 432

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
           E+F  M      P ++TF +VL+AC+H GL+E+ R +F  M+ +  I+P +EH+  LVD+
Sbjct: 433 EMFNRMDLQGEQPNWLTFSTVLAACSHGGLLEDARCYFLRMIGDNSIDPVVEHYRCLVDL 492

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           +GR G+L+   DL   MPFE D+  W A+LGAC +H + E     A+ L++++
Sbjct: 493 LGRSGQLDRMEDLANEMPFEGDEVSWTAVLGACSLHGDTERGGRIAKQLLEMD 545


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 197/583 (33%), Positives = 313/583 (53%), Gaps = 60/583 (10%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y K   +A ARK F ++   +V S+N +I+ Y           A  LFD +PE D V++N
Sbjct: 53  YSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLI---AHQLFDQIPEPDLVSYN 109

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
           T+IS YA  GE   AL LF+ M    +                             D  +
Sbjct: 110 TLISAYADCGETAPALGLFSGMREMGL---------------------------DMDGFT 142

Query: 125 LSALVSGLIQN-GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           LSA+++    + G + +   V V       G +  V   N L+  YG+ G +++A+++F 
Sbjct: 143 LSAVITACCDDVGLIGQLHSVAVS-----SGFDSYVSVNNALLTYYGKNGDLDDAKRVF- 196

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTM 239
                   G G +   R+ VSWNSMI+ Y +  +   A  +F++M+ R    D F+  ++
Sbjct: 197 -------YGMGGI---RDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASV 246

Query: 240 ISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQI-GNLELALDFFKRMPQKN 294
           ++ +  + D+        ++     H ++   + ++  Y++  G +      F+ + + +
Sbjct: 247 LTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPD 306

Query: 295 LVSWNSMIAGCETNKDY-EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           LV WN+M++G   N+++ E A++ F QMQ  G +P+  +F  ++S  S +     G QIH
Sbjct: 307 LVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIH 366

Query: 354 QMVTKTVIPD--VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
            +  K+ IP   + ++NALI MY++CG + +AR +F+ M    N VS N+MI G A HG 
Sbjct: 367 SLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGYAQHGI 425

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             E+L LF+ M   ++ PT ITFISVLSACAH G VEEG  +F  M  ++ IEP  EH++
Sbjct: 426 EMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYS 485

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            ++D++GR G+L +A +LI  MPF P    W +LLGACR H N+ELA  AA  ++++EP 
Sbjct: 486 CMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPS 545

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N+ PYV+L NMYA  GRW++   VR  M+   +KK  G SW++
Sbjct: 546 NAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIE 588



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 113/490 (23%), Positives = 195/490 (39%), Gaps = 122/490 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           +I+ Y K      A +LFD++P+ D+VS+N +IS Y      G    A  LF  M E   
Sbjct: 80  IIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYAD---CGETAPALGLFSGMREMGL 136

Query: 58  -RDCVTWNTVISG---------------------------------YAKTGEMEEALRLF 83
             D  T + VI+                                  Y K G++++A R+F
Sbjct: 137 DMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVF 196

Query: 84  NSMPA-RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVS-------- 130
             M   R+ VSWN+MI  + Q+ + + A+  F  M  R    D  +L+++++        
Sbjct: 197 YGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDL 256

Query: 131 --GLIQNGEL--------DEAARVLVKCGSRCDGG-------------EDLVRAYNTLIV 167
             GL  +G+L              L+   S+C GG              DLV  +NT++ 
Sbjct: 257 SGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLV-LWNTMVS 315

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
           GY Q    EE    F +  + C R    + ++ N  S+  +I   +        ++I   
Sbjct: 316 GYSQN---EE----FLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 228 MLERDTFSW-----NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
            L+ D  S      N +I+ Y    ++++A  LF +M   +T++ N+M++GYAQ G    
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEME 428

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           +L  F+ M ++ +                                P   TF S+LS  + 
Sbjct: 429 SLHLFQWMLERQIA-------------------------------PTSITFISVLSACAH 457

Query: 343 IVDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
              +  G     M+ +   + P+    + +I +  R G + EA  +   M      + W 
Sbjct: 458 TGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWA 517

Query: 401 AMIGGCASHG 410
           +++G C +HG
Sbjct: 518 SLLGACRTHG 527



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 158/373 (42%), Gaps = 58/373 (15%)

Query: 254 NLFVK--MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           +L++K  +P P T   N  +  Y++ G L  A   F+ +   N+ S+N++IA        
Sbjct: 32  SLYIKSFIP-PSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRP 90

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILS-------------MSSGIVDLHLGM-------- 350
             A +LF Q+     +PD  ++++++S             + SG+ ++ L M        
Sbjct: 91  LIAHQLFDQI----PEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAV 146

Query: 351 ------------QIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
                       Q+H +   +     V +NNAL+T Y + G + +A+ +F  M  +++ V
Sbjct: 147 ITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEV 206

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWN+MI     H   ++AL LF+ M    +     T  SVL+A      +  G Q F   
Sbjct: 207 SWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQ-FHGQ 265

Query: 458 VNEYGIEPRIEHFASLVDIVGR-HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE 516
           + + G        + L+D+  +  G + D   + + +  EPD  +W  ++       N E
Sbjct: 266 LIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEIT-EPDLVLWNTMVSG--YSQNEE 322

Query: 517 LAQVAAEALMKVEP----ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
             + A E   +++      N   +V + +  +++       ++  L   ++I  P+    
Sbjct: 323 FLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDI--PSNRIS 380

Query: 573 VD------FSPCG 579
           VD      +S CG
Sbjct: 381 VDNALIAMYSKCG 393


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 205/634 (32%), Positives = 327/634 (51%), Gaps = 78/634 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ER 58
           ++  Y K   +  AR+LF+E+P  D ++   +I+ Y +    G LE  R +F+  P   R
Sbjct: 54  LLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCAL---GNLELGREIFNGTPLYMR 110

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSM----------PARNVVS--------------- 93
           D V +N +I+GYA  G+   AL LF +M             +V+S               
Sbjct: 111 DSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQM 170

Query: 94  ----------------WNAMISGFLQNGD--------VANAIEFFDRMPGRDSASLSALV 129
                            NA++S +++           + +A + FD MP RD  + + ++
Sbjct: 171 HCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMI 230

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           +G ++N +L+ A  V           E+L  A+N +I GY   G  +EA  L  K+    
Sbjct: 231 TGYVRNDDLNGAREVFEAMV------ENLGAAWNAMISGYVHCGCFQEALTLCRKMRF-- 282

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD-----TFSW---NTMIS 241
                 +  + + +++ ++I   A  G     +++   +L+ +     +F     N +I+
Sbjct: 283 ------LGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALIT 336

Query: 242 GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
            Y     ++EA  +F  MP  + +TWNA++SGY   G +E A  FF+ MP KNL++   M
Sbjct: 337 LYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVM 396

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTV 360
           I+G   N   +  +KLF QM+++G +P    F+  L+  S +  L  G Q+H Q+V    
Sbjct: 397 ISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGY 456

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
              + + NA+I+MYA+CG +  A  +F  M  + ++VSWN+MI     HG   +A+ELF 
Sbjct: 457 ESSLSVGNAMISMYAKCGVVEAAESVFVTMPSV-DLVSWNSMIAALGQHGHGVKAIELFD 515

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M    V P  ITF++VL+AC+HAGLVE+GR +F SM+  YGI P  +H+A +VD+  R 
Sbjct: 516 QMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRA 575

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G    A  +I  MP +P   VW ALL  CR+H N++L   AAE L K+ P+N   YVLL 
Sbjct: 576 GMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLS 635

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N+YADVGRW++  +VR LM+   ++K    SW++
Sbjct: 636 NIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIE 669



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 151/319 (47%), Gaps = 53/319 (16%)

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP--QKN 294
           N ++  Y    ++  A  LF ++P+PD +    +++ Y  +GNLEL  + F   P   ++
Sbjct: 52  NRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV--DLHLGMQI 352
            V +N+MI G   N D   A++LF  M+ +  +PD  TF+S+LS     V  +   G Q+
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCG-QM 170

Query: 353 HQMVTKTVIPDV--PINNALITMYAR--------CGAIVEARIIFEEM------------ 390
           H  V KT +  V   + NAL+++Y +        C A+V AR +F+EM            
Sbjct: 171 HCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMI 230

Query: 391 -----------------KLLKNV-VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
                             +++N+  +WNAMI G    G   EAL L + MR   +    I
Sbjct: 231 TGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDI 290

Query: 433 TFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFAS----LVDIVGRHGRLEDAM 487
           T+ +++SACA+ G  + G+Q H   + NE  + P      S    L+ +  ++ ++++A 
Sbjct: 291 TYTTIISACANVGSFQMGKQVHAYILKNE--LNPNHSFCLSVSNALITLYCKNNKVDEAR 348

Query: 488 DLIKGMPFEPDKAVWGALL 506
            +   MP   +   W A+L
Sbjct: 349 KIFYAMPVR-NIITWNAIL 366


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 199/630 (31%), Positives = 319/630 (50%), Gaps = 108/630 (17%)

Query: 14  ARKLFDEMP--QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYA 71
           AR+LFDE+P  +R+V +WN ++S +  S   G L +AR +F  MPERD V+W  ++ G  
Sbjct: 84  ARRLFDEIPLARRNVFTWNSLLSMFAKS---GRLADARGVFAEMPERDAVSWTVMVVGLN 140

Query: 72  KTGEMEEALRLFNSMPA--------------------------RNVVSW----------- 94
           + G   EA++    M A                          R V S+           
Sbjct: 141 RAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVP 200

Query: 95  --NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRC 152
             N++++ + + GD   A   F+RMP R  +S +A+VS     G +D A  +      R 
Sbjct: 201 VANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRS 260

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI---------------PVNCDRGEGNVR 197
                 + ++N +I GY Q G   +A KLF ++                ++     GNVR
Sbjct: 261 ------IVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVR 314

Query: 198 FKRNIVSW-------------NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI 244
             + + ++             N++I  YAK+G V +AR I +Q +E D            
Sbjct: 315 IGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDL----------- 363

Query: 245 HVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
                             + +++ A++ GY +IG++E A + F  M  +++V+W +MI G
Sbjct: 364 ------------------NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVG 405

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PD 363
            E N   + AI LF  M   G +P+ +T +++LS+ + +  L  G QIH    ++++   
Sbjct: 406 YEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQS 465

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
             ++NA+ITMYAR G+   AR +F+++   K  ++W +MI   A HG   EA+ LF+ M 
Sbjct: 466 SSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML 525

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
              V P  IT++ VLSAC+HAG V EG++++  + NE+ I P + H+A +VD++ R G  
Sbjct: 526 RAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLF 585

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
            +A + I+ MP EPD   WG+LL ACRVH N ELA++AAE L+ ++P NS  Y  + N+Y
Sbjct: 586 SEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVY 645

Query: 544 ADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +  GRW DA  +    K   ++K TG+SW 
Sbjct: 646 SACGRWSDAARIWKARKEKAVRKETGFSWT 675



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 140/575 (24%), Positives = 232/575 (40%), Gaps = 170/575 (29%)

Query: 139 DEAARVLVKCGSRCDGGED------------LVRAY--NTLIVGYGQR----GRVEEARK 180
           D  AR+L  C +  + G              L  AY  N L+  YG+     G + +AR+
Sbjct: 27  DHYARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARR 86

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD+IP+           +RN+ +WNS++  +AK+G +  AR +F +M ERD  SW  M+
Sbjct: 87  LFDEIPLA----------RRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMV 136

Query: 241 SGYIHVLDMEEASNLFVKM------PHPDTLT---------------------------- 266
            G        EA    + M      P   TLT                            
Sbjct: 137 VGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLG 196

Query: 267 -----WNAMVSGYAQIGNLELALDFFKR-------------------------------M 290
                 N++++ Y + G+ E A   F+R                               M
Sbjct: 197 SCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESM 256

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLG 349
           P +++VSWN+MIAG   N     A+KLF +M  E    PD  T +S+LS  + + ++ +G
Sbjct: 257 PDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIG 316

Query: 350 MQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEE-----------MKLL---- 393
            Q+H  + +T +  +  + NALI+ YA+ G++  AR I ++             LL    
Sbjct: 317 KQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYV 376

Query: 394 -----------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
                            ++VV+W AMI G   +G   EA++LF+SM +    P   T  +
Sbjct: 377 KIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAA 436

Query: 437 VLSACAHAGLVEEGRQ-HFKS------------------------------MVNEYGIEP 465
           VLS CA    ++ G+Q H ++                              M ++     
Sbjct: 437 VLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRK 496

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNVELAQVAA 522
               + S++  + +HG+ E+A+ L + M     EPD+  +  +L AC     V   +   
Sbjct: 497 ETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYY 556

Query: 523 EALM---KVEPENSTPYVLLYNMYADVGRWDDANE 554
           + +    ++ PE S  Y  + ++ A  G + +A E
Sbjct: 557 DQIKNEHQIAPEMS-HYACMVDLLARAGLFSEAQE 590


>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 197/593 (33%), Positives = 328/593 (55%), Gaps = 65/593 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y K   ++ AR+ F+ M  RD VSWN +I+GY      G LE++  LF+ M E   
Sbjct: 226 ILAVYAKCGRLSCARRFFENMDYRDRVSWNSIITGYCQK---GELEKSHQLFEKMQEEGI 282

Query: 61  ----VTWNTVISGYAKTGEMEEALRLFNSMPARNVV----SWNAMISGFLQNGDVANAIE 112
               VTWN +I+ Y+++G+ ++A+ L   M +  +V    +W +MISGF QN   + A+E
Sbjct: 283 EPGLVTWNILINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALE 342

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG-SRCDGGEDLVRAYNTLIVGYGQ 171
            F  M          L++G+  NG       V V  G S C   + L +      V    
Sbjct: 343 LFREM----------LLAGIEPNG-------VTVTSGISACASLKALKKGMELHSVA--- 382

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
                        + + C           +++  NS+I  Y+K+G++  AR +F+ +L++
Sbjct: 383 -------------VKIGC---------VEDLLVGNSLIDMYSKSGELEDARRVFDMILKK 420

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFF 287
           D ++WN+MI GY       +A +LF+KM      P+ +TWNAM+SGY Q G+ + A+D F
Sbjct: 421 DVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLF 480

Query: 288 KRMPQKNLV-----SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
            RM +  L+     SWNS+IAG   N     A+ +F QMQ    +P+  T  SIL   + 
Sbjct: 481 HRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACAN 540

Query: 343 IVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +V      +IH  ++ + +  ++ + N LI  YA+ G IV A+ IF+ +   K+++SWN+
Sbjct: 541 LVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISS-KDIISWNS 599

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           +I G   HG +  AL+LF  M    V P+  TF+S++ A + +G+V++G+Q F SM+ +Y
Sbjct: 600 LIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDY 659

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
            I P +EH ++++D++GR G+L +A++ I+ M  EPD  +W ALL A ++H N+ LA  A
Sbjct: 660 QILPGLEHHSAMIDLLGRSGKLGEAIEFIEDMAIEPDSCIWAALLTASKIHGNIGLAIRA 719

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            E L+++EP N + +  +  MYA  G+++D +++R   K +  K+P G SW++
Sbjct: 720 GECLLELEPSNFSIHQQILQMYALSGKFEDVSKLRKSEKRSETKQPLGCSWIE 772



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 221/468 (47%), Gaps = 54/468 (11%)

Query: 54  IMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEF 113
           ++ E +      ++S YAK G + EA ++F  M  RN+ +W+AMI  + +       ++ 
Sbjct: 113 LLEEMNPFVETKLVSMYAKCGSLGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQH 172

Query: 114 FDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           F  M          +  G++ +  L    ++L  CG+  D                    
Sbjct: 173 FFFM----------MEDGIVPDEFL--LPKILQACGNCGDA------------------- 201

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
              E  KL   + + C           NI   NS++  YAK G +  AR  FE M  RD 
Sbjct: 202 ---ETGKLIHSLVIRCG-------MNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDR 251

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKR 289
            SWN++I+GY    ++E++  LF KM      P  +TWN +++ Y+Q G  + A++  K+
Sbjct: 252 VSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKK 311

Query: 290 MPQKNLV----SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
           M    +V    +W SMI+G   N     A++LF +M + G +P+  T +S +S  + +  
Sbjct: 312 MESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKA 371

Query: 346 LHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           L  GM++H +  K   + D+ + N+LI MY++ G + +AR +F +M L K+V +WN+MIG
Sbjct: 372 LKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVF-DMILKKDVYTWNSMIG 430

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           G    G+  +A +LF  M    V P  +T+ +++S     G  ++    F  M  +  I+
Sbjct: 431 GYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIK 490

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMP---FEPDKAVWGALLGAC 509
                + SL+    ++G    A+ + + M      P+     ++L AC
Sbjct: 491 RDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPAC 538



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/414 (21%), Positives = 176/414 (42%), Gaps = 62/414 (14%)

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI-MCYAKAGDVVSAR-EIFEQM 228
           + GR+ +A    D I     +G  NV+    +    S I    A+ G  + AR  + E+M
Sbjct: 62  KNGRLADAIACLDAIA----QGGSNVKPNTYMQLLQSCIDQGSAELGRKLHARIGLLEEM 117

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
              + F    ++S Y     + EA  +F +M   +   W+AM+  Y++            
Sbjct: 118 ---NPFVETKLVSMYAKCGSLGEARKVFGEMRERNLYAWSAMIGAYSR------------ 162

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
                               + +   ++ F  M  +G  PD      IL       D   
Sbjct: 163 -------------------EQMWREVVQHFFFMMEDGIVPDEFLLPKILQACGNCGDAET 203

Query: 349 GMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G  IH +V +  +  ++ ++N+++ +YA+CG +  AR  FE M   ++ VSWN++I G  
Sbjct: 204 GKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMD-YRDRVSWNSIITGYC 262

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
             G   ++ +LF+ M+   + P  +T+  ++++ + +G  ++  +  K M   + I P +
Sbjct: 263 QKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKM-ESFRIVPDV 321

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGAC----RVHNNVELAQV 520
             + S++    ++ R   A++L + M     EP+     + + AC     +   +EL  V
Sbjct: 322 FTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMELHSV 381

Query: 521 AAE--ALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
           A +   +  +   NS     L +MY+  G  +DA  V  ++   ++     Y+W
Sbjct: 382 AVKIGCVEDLLVGNS-----LIDMYSKSGELEDARRVFDMILKKDV-----YTW 425



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 7/228 (3%)

Query: 348 LGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           LG ++H  +      +  +   L++MYA+CG++ EAR +F EM+  +N+ +W+AMIG  +
Sbjct: 103 LGRKLHARIGLLEEMNPFVETKLVSMYAKCGSLGEARKVFGEMR-ERNLYAWSAMIGAYS 161

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
                 E ++ F  M    ++P       +L AC + G  E G+    S+V   G+   I
Sbjct: 162 REQMWREVVQHFFFMMEDGIVPDEFLLPKILQACGNCGDAETGKL-IHSLVIRCGMNFNI 220

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
               S++ +  + GRL  A    + M +  D+  W +++        +E +    E + +
Sbjct: 221 RVSNSILAVYAKCGRLSCARRFFENMDYR-DRVSWNSIITGYCQKGELEKSHQLFEKMQE 279

Query: 528 --VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
             +EP   T + +L N Y+  G+ DDA E+   M+S  I  P  ++W 
Sbjct: 280 EGIEPGLVT-WNILINSYSQSGKCDDAMELMKKMESFRI-VPDVFTWT 325


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 185/519 (35%), Positives = 286/519 (55%), Gaps = 44/519 (8%)

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           +DC   N  IS  +    M+ A+  +  M   NV  +NAMI GF+Q+     A+E + +M
Sbjct: 12  QDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQM 71

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
              + +  S     LI+             CG        LV   + L       G V  
Sbjct: 72  LRANVSPTSYTFPSLIK------------ACG--------LV---SQLRFAEAVHGHV-- 106

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
            R  FD                 ++    S++  Y+  G +  +  +F++M ERD F+W 
Sbjct: 107 WRNGFDS----------------HVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWT 150

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           TM+SG + V DM  A  LF  MP  +  TWN ++ GYA++  +++A   F +MP ++++S
Sbjct: 151 TMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIIS 210

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           W +MI     NK +  A+ +F +M   G  PD  T ++++S  + +  L LG +IH  + 
Sbjct: 211 WTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIM 270

Query: 358 KTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           +     DV I +ALI MYA+CG++  + ++F +++  KN+  WN++I G A HG+A EAL
Sbjct: 271 QHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLRE-KNLFCWNSVIEGLAVHGYAEEAL 329

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
            +F  M   K+ P  +TF+SVLSAC HAGL+EEGR+ F SM  ++ I P +EH+  +VD+
Sbjct: 330 AMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDL 389

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           + + G LE+A+ LI+ M  EP+  +WGALL  C++H N+E+AQVAA  LM +EP NS  Y
Sbjct: 390 LSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSGYY 449

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNI-KKPTGYSWVD 574
            LL NM A+V RW +A ++RL MK   + K+  G SW++
Sbjct: 450 TLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIE 488



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/422 (22%), Positives = 189/422 (44%), Gaps = 60/422 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           MI G+V+  +  +A +L+ +M + +V   +      I  +  G + + R+   +      
Sbjct: 51  MIKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLI--KACGLVSQLRFAEAVHGHVWR 108

Query: 57  ---ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEF 113
              +       +++  Y+  G +EE++R+F+ MP R+V +W  M+SG ++ GD+++A   
Sbjct: 109 NGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRL 168

Query: 114 FDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           FD MP R+ A+ + L+ G  +  E+D A  +  +  +R     D++ ++ T+I  Y Q  
Sbjct: 169 FDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPAR-----DII-SWTTMINCYSQNK 222

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-- 231
           R  EA  +F+++  +            + V+  ++I   A  G +   +EI   +++   
Sbjct: 223 RFREALGVFNEMAKHG--------ISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGF 274

Query: 232 --DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKR 289
             D +  + +I  Y     ++ +  +F K+   +   WN+++ G A  G  E AL  F +
Sbjct: 275 NLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDK 334

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
           M ++ +                               KP+  TF S+LS  +    +  G
Sbjct: 335 MEREKI-------------------------------KPNGVTFVSVLSACNHAGLIEEG 363

Query: 350 MQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
            +    +T+  ++ P V     ++ + ++ G + EA  +   MKL  N V W A++ GC 
Sbjct: 364 RKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCK 423

Query: 408 SH 409
            H
Sbjct: 424 LH 425



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 139/304 (45%), Gaps = 33/304 (10%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G +EE+  +FD MPERD   W T++SG  + G+M  A RLF+ MP RN+ +WN +I G+ 
Sbjct: 129 GRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYA 188

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCD------ 153
           +  +V  A   F++MP RD  S + +++   QN    EA  V   + K G   D      
Sbjct: 189 RLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMAT 248

Query: 154 --------GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF----KRN 201
                   G  DL +  +  I+ +G    V     L D            + F    ++N
Sbjct: 249 VISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKN 308

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN-----TMISGYIHVLDMEEASNLF 256
           +  WNS+I   A  G    A  +F++M ER+    N     +++S   H   +EE    F
Sbjct: 309 LFCWNSVIEGLAVHGYAEEALAMFDKM-EREKIKPNGVTFVSVLSACNHAGLIEEGRKRF 367

Query: 257 VKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKD 310
             M       P    +  MV   ++ G LE AL   + M  + N V W ++++GC+ +++
Sbjct: 368 ASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRN 427

Query: 311 YEGA 314
            E A
Sbjct: 428 LEIA 431


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 206/620 (33%), Positives = 324/620 (52%), Gaps = 62/620 (10%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP----ERDC 60
           YV    + +AR+LFD+   + VVSWNVMISGY + RG G  +EA  LF +M     E D 
Sbjct: 89  YVHCGSVNEARRLFDKFSNKSVVSWNVMISGY-AHRGLG--QEAFNLFTLMQQEGLEPDK 145

Query: 61  VTWNTVISGYAKTGEM----EEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
            T+ +++S  +    +    E  +R+  +  A N    NA+IS + + G V +A   FD 
Sbjct: 146 FTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDA 205

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           M  RD  S + L     ++G   E+ +         +G       Y  ++   G    +E
Sbjct: 206 MASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQ--EGVRPSRITYMNVLSACGSLAALE 263

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           + +++  +I  +      +VR         ++   Y K G V  ARE+FE +  RD  +W
Sbjct: 264 KGKQIHAQIVES--EHHSDVRVS------TALTKMYIKCGAVKDAREVFECLPNRDVIAW 315

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH----PDTLTW------------------------- 267
           NTMI G +    +EEA  +F +M      PD +T+                         
Sbjct: 316 NTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVK 375

Query: 268 ----------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                     NA+++ Y++ G+++ A   F RMP++++VSW +++ G         +   
Sbjct: 376 DGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFST 435

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYAR 376
           F +M  +G + ++ T+  +L   S  V L  G +IH  V K  +  D+ + NAL++MY +
Sbjct: 436 FKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFK 495

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG++ +A  + E M   ++VV+WN +IGG A +G   EAL+ F+ M+S ++ P   TF++
Sbjct: 496 CGSVEDAIRVSEGMST-RDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVN 554

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           V+SAC    LVEEGR+ F SM  +YGI P  +H+A +VDI+ R G L +A D+I  MPF+
Sbjct: 555 VMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFK 614

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
           P  A+WGALL ACR H NVE+ + AAE  +K+EP+N+  YV L  +YA  G W D  ++R
Sbjct: 615 PSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLR 674

Query: 557 LLMKSNNIKKPTGYSWVDFS 576
            LMK   +KK  G SW++ +
Sbjct: 675 KLMKERGVKKEPGRSWIEVA 694



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 135/489 (27%), Positives = 231/489 (47%), Gaps = 33/489 (6%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR--- 120
           NT++  Y   G + EA RLF+    ++VVSWN MISG+   G    A   F  M      
Sbjct: 83  NTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLE 142

Query: 121 -DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            D  +  +++S       L+    V V+      G  +     N LI  Y + G V +AR
Sbjct: 143 PDKFTFVSILSACSSPAALNWGREVHVRVME--AGLANNATVGNALISMYAKCGSVRDAR 200

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFS 235
           ++FD +              R+ VSW ++   YA++G    + + +  ML+        +
Sbjct: 201 RVFDAMA------------SRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRIT 248

Query: 236 WNTMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           +  ++S    +  +E+   +  ++     H D     A+   Y + G ++ A + F+ +P
Sbjct: 249 YMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP 308

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
            +++++WN+MI G   +   E A  +F +M  E   PDR T+ +ILS  +    L  G +
Sbjct: 309 NRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKE 368

Query: 352 IHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           IH    K  ++ DV   NALI MY++ G++ +AR +F+ M   ++VVSW A++GG A  G
Sbjct: 369 IHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALVGGYADCG 427

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
              E+   FK M    V    IT++ VL AC++   ++ G++   + V + GI   +   
Sbjct: 428 QVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKE-IHAEVVKAGIFADLAVA 486

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
            +L+ +  + G +EDA+ + +GM    D   W  L+G     N   L  +    +MK E 
Sbjct: 487 NALMSMYFKCGSVEDAIRVSEGMSTR-DVVTWNTLIGGL-AQNGRGLEALQKFEVMKSEE 544

Query: 531 --ENSTPYV 537
              N+T +V
Sbjct: 545 MRPNATTFV 553



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 168/354 (47%), Gaps = 45/354 (12%)

Query: 196 VRF--KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEAS 253
           +RF  K N+   N+++  Y   G V  AR +F++   +   SWN MISGY H    +EA 
Sbjct: 71  LRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAF 130

Query: 254 NLFVKMPH-------------------PDTLTW--------------------NAMVSGY 274
           NLF  M                     P  L W                    NA++S Y
Sbjct: 131 NLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMY 190

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
           A+ G++  A   F  M  ++ VSW ++      +   + ++K +  M  EG +P R T+ 
Sbjct: 191 AKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYM 250

Query: 335 SILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLL 393
           ++LS    +  L  G QIH Q+V      DV ++ AL  MY +CGA+ +AR +FE +   
Sbjct: 251 NVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP-N 309

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           ++V++WN MIGG    G   EA  +F  M    V P  +T++++LSACA  G +  G++ 
Sbjct: 310 RDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEI 369

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
               V + G+   +    +L+++  + G ++DA  +   MP + D   W AL+G
Sbjct: 370 HARAVKD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALVG 421



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 150/282 (53%), Gaps = 8/282 (2%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           P+    N ++  Y   G++  A   F +   K++VSWN MI+G       + A  LF  M
Sbjct: 77  PNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLM 136

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAI 380
           Q EG +PD+ TF SILS  S    L+ G ++H  V +  +  +  + NALI+MYA+CG++
Sbjct: 137 QQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSV 196

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
            +AR +F+ M   ++ VSW  + G  A  G+A E+L+ + +M    V P+ IT+++VLSA
Sbjct: 197 RDARRVFDAMA-SRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSA 255

Query: 441 CAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           C     +E+G+Q H + + +E+  + R+    +L  +  + G ++DA ++ + +P   D 
Sbjct: 256 CGSLAALEKGKQIHAQIVESEHHSDVRVS--TALTKMYIKCGAVKDAREVFECLP-NRDV 312

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMK--VEPENSTPYVLL 539
             W  ++G       +E A      ++K  V P+  T   +L
Sbjct: 313 IAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAIL 354



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/465 (24%), Positives = 204/465 (43%), Gaps = 74/465 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           +IS Y K   +  AR++FD M  RD VSW  +   Y     SG+ +E+   +  M     
Sbjct: 186 LISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAE---SGYAQESLKTYHAMLQEGV 242

Query: 56  -PERDCVTWNTVISG-----------------------------------YAKTGEMEEA 79
            P R  +T+  V+S                                    Y K G +++A
Sbjct: 243 RPSR--ITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDA 300

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQN 135
             +F  +P R+V++WN MI G + +G +  A   F RM       D  +  A++S   + 
Sbjct: 301 REVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARP 360

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           G L     +  +     DG    VR  N LI  Y + G +++AR++FD++P         
Sbjct: 361 GGLACGKEIHARAVK--DGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP--------- 409

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEE 251
              KR++VSW +++  YA  G VV +   F++ML    E +  ++  ++    + + ++ 
Sbjct: 410 ---KRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKW 466

Query: 252 ASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
              +  ++       D    NA++S Y + G++E A+   + M  +++V+WN++I G   
Sbjct: 467 GKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQ 526

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVP 365
           N     A++ F  M+ E  +P+  TF +++S       +  G +    + K   ++P   
Sbjct: 527 NGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEK 586

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
               ++ + AR G + EA  +   M    +   W A++  C +HG
Sbjct: 587 HYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHG 631



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 111/283 (39%), Gaps = 56/283 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I+ Y K   M  AR++FD MP+RDVVSW  ++ GY      G + E+   F  M ++  
Sbjct: 388 LINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYAD---CGQVVESFSTFKKMLQQGV 444

Query: 59  -------------------------------------DCVTWNTVISGYAKTGEMEEALR 81
                                                D    N ++S Y K G +E+A+R
Sbjct: 445 EANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIR 504

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG---RDSASLSALVSGLIQNGEL 138
           +   M  R+VV+WN +I G  QNG    A++ F+ M     R +A+    V    +   L
Sbjct: 505 VSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNL 564

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
            E  R       +  G     + Y  ++    + G + EA  +   +P           F
Sbjct: 565 VEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMP-----------F 613

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           K +   W +++      G+V    +  EQ L+ +  +  T +S
Sbjct: 614 KPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVS 656


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 193/599 (32%), Positives = 315/599 (52%), Gaps = 66/599 (11%)

Query: 41  GSGFLEEARYLFDIMP--ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMI 98
           G G   EAR LFD +P   R+  TWN+++S YAK+G + +A  +F  MP R+ VSW  M+
Sbjct: 76  GRGCFHEARRLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMV 135

Query: 99  SGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCD--GGE 156
            G  + G   +A++ F  M G   A    +++ ++ +    EA  +  K  S     G  
Sbjct: 136 VGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLS 195

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG----------EGNVRF-------- 198
             V   N+++  YG+ G  E AR +F+++ V  +            +G +          
Sbjct: 196 SCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENM 255

Query: 199 -KRNIVSWNSMIMCYAKAGDVVSAREIFEQML-----ERDTFS----------------- 235
            +R+IVSWN++I  Y + G    A + F +ML     E D F+                 
Sbjct: 256 EERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMG 315

Query: 236 ------------------WNTMISGYIHVLDMEEASNLFVKMPHPD--TLTWNAMVSGYA 275
                              N +IS Y     +E A  +  K    D   +++ A++ GY 
Sbjct: 316 KQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYV 375

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           ++G+ + A + F  M  +++++W +MI G E N   + A++LF  M   G +P+ HT ++
Sbjct: 376 KLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAA 435

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +LS  + +  L  G QIH    +++    V ++NA+IT+YAR G++  AR +F+++   K
Sbjct: 436 VLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRK 495

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
             V+W +MI   A HG   +A+ LF+ M    V P  +T+I V SAC HAG +++G++++
Sbjct: 496 ETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYY 555

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           + M+NE+GI P + H+A +VD++ R G L +A + I+ MP  PD  VWG+LL ACRV  N
Sbjct: 556 EQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKN 615

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            +LA++AAE L+ ++P+NS  Y  L N+Y+  GRW+DA  +  L K   +KK TG+SW 
Sbjct: 616 ADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWT 674



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 134/520 (25%), Positives = 210/520 (40%), Gaps = 126/520 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           ++S Y K   +A AR +F +MP+RD VSW VM+ G   +R   F +  +   D++ E   
Sbjct: 103 LLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGL--NRAGRFWDAVKTFLDMVGEGLA 160

Query: 58  ----------------------------------RDCV-TWNTVISGYAKTGEMEEALRL 82
                                               CV   N+V+  Y K G+ E A  +
Sbjct: 161 PSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAV 220

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAA 142
           F  M  R+  SWNAM+S +   G +  A+  F+ M  R   S +A+++G  QNG  D A 
Sbjct: 221 FERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMAL 280

Query: 143 R--------------------VLVKCGS-RCDGGEDLVRAY-------------NTLIVG 168
           +                    VL  C + R       + +Y             N LI  
Sbjct: 281 KFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALIST 340

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y + G VE AR++ DK  V             N++S+ +++  Y K GD   ARE+F+ M
Sbjct: 341 YAKSGSVETARRIMDKAVVA----------DLNVISFTALLEGYVKLGDTKQAREVFDVM 390

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW----------------- 267
             RD  +W  MI GY      +EA  LF  M    P P++ T                  
Sbjct: 391 NNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGK 450

Query: 268 ------------------NAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETN 308
                             NA+++ YA+ G++ LA   F ++  +K  V+W SMI     +
Sbjct: 451 QIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQH 510

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPI 366
              E AI LF +M   G KPDR T+  + S  +  G +D         +    ++P++  
Sbjct: 511 GLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSH 570

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
              ++ + AR G + EA    + M +  + V W +++  C
Sbjct: 571 YACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAAC 610


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 219/626 (34%), Positives = 324/626 (51%), Gaps = 70/626 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS----RGSGFLEEARYL----- 51
           +I  Y +   +  AR LFD MP +D V WNVM++GY+ +      +G   E R       
Sbjct: 188 LIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPN 247

Query: 52  ------------FDIMP---------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                        +IM                E D    NT+++ YAK G + +A RLF+
Sbjct: 248 SVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFD 307

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            MP  ++V+WN MISG++QNG +  A   F  M       DS + S+ +  L +   L +
Sbjct: 308 MMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQ 367

Query: 141 AARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
              +   +++ G   D     V   + LI  Y +   VE ARK+FD+            R
Sbjct: 368 GKEIHCYIIRNGVSLD-----VFLKSALIDIYFKCRDVEMARKIFDQ------------R 410

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQML-ERDTFSWNTMIS------GYIHVLDME 250
              +IV   +MI  Y   G   +A EIF  +L ER   +  T+ S      G   +   +
Sbjct: 411 TPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGK 470

Query: 251 EASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           E     +K  H  +    +A++  YA+ G L+LA   F  +  K+ V WNSMI  C  N 
Sbjct: 471 ELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNG 530

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINN 368
             E AI LF QM + G K D  + S+ LS  + +  LH G +IH  + +     D+   +
Sbjct: 531 KPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAES 590

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           ALI MY++CG +  A  +F+ M+  KN VSWN++I    +HG   ++L LF  M    + 
Sbjct: 591 ALIDMYSKCGNLDLACRVFDTMEE-KNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQ 649

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P ++TF++++SAC HAG V+EG  +F+ M  E GI  R+EH+A +VD+ GR GRL +A  
Sbjct: 650 PDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFG 709

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           +I  MPF PD  VWG LLGACR+H NVELA+VA+  L  ++P+NS  YVLL N++A+ G+
Sbjct: 710 MINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQ 769

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVD 574
           W+   ++R LMK   ++K  G SW+D
Sbjct: 770 WESVLKIRSLMKERGVQKVPGCSWID 795



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 135/550 (24%), Positives = 254/550 (46%), Gaps = 75/550 (13%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D    +++I  Y++ G + +A  LF+ MP+++ V WN M++G+++NGD  NA   F  
Sbjct: 179 ELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFME 238

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG-----GEDL-VRAYNTLIVGYG 170
           M   ++   S   + ++       A+ +++  GS+  G     G ++     NTL+  Y 
Sbjct: 239 MRRTETNPNSVTFACVLSVC----ASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYA 294

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
           + G + +AR+LFD +P            K ++V+WN MI  Y + G +  A  +F +M+ 
Sbjct: 295 KCGHLFDARRLFDMMP------------KTDLVTWNGMISGYVQNGFMDEASCLFHEMIS 342

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPHP---------DTLTWNAMVSGYAQIGNLE 281
                 +   S ++ +L  E A+    K  H          D    +A++  Y +  ++E
Sbjct: 343 ARMKPDSITFSSFLPLLS-EGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVE 401

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
           +A   F +    ++V   +MI+G   N     A+++F  +  E  + +  T +S+L   +
Sbjct: 402 MARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACA 461

Query: 342 GIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
           G+  L LG ++H  + K        + +A++ MYA+CG +  A   F  +   K+ V WN
Sbjct: 462 GLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS-DKDAVCWN 520

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG--------RQ 452
           +MI  C+ +G   EA++LF+ M         ++  + LSACA+   +  G        R 
Sbjct: 521 SMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRG 580

Query: 453 HFKS-------MVNEYG--------------IEPRIE-HFASLVDIVGRHGRLEDAMDLI 490
            F+S       +++ Y               +E + E  + S++   G HGRL+D+++L 
Sbjct: 581 AFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLF 640

Query: 491 KGM---PFEPDKAVWGALLGAC----RVHNNVELAQVAAEAL-MKVEPENSTPYVLLYNM 542
            GM     +PD   + A++ AC    +V   +   +   E L +    E+   Y  + ++
Sbjct: 641 HGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEH---YACMVDL 697

Query: 543 YADVGRWDDA 552
           +   GR ++A
Sbjct: 698 FGRAGRLNEA 707



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 211/452 (46%), Gaps = 36/452 (7%)

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN-GEL 138
           LRL+ S P      WN MI GF   G    A+ F+ +M G  +         +I+  G L
Sbjct: 107 LRLWCSEP------WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGL 160

Query: 139 DEAA--RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
           +  A  RV V    +  G E  V   ++LI  Y + G + +AR LFD++P          
Sbjct: 161 NSVALGRV-VHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMP---------- 209

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF 256
              ++ V WN M+  Y K GD  +A  +F +M   +T   +   +  + V   E   N  
Sbjct: 210 --SKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFG 267

Query: 257 VKMP--------HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
            ++           D+   N +++ YA+ G+L  A   F  MP+ +LV+WN MI+G   N
Sbjct: 268 SQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQN 327

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPIN 367
              + A  LF +M     KPD  TFSS L + S    L  G +IH  + +  V  DV + 
Sbjct: 328 GFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLK 387

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           +ALI +Y +C  +  AR IF++ +   ++V   AMI G   +G    ALE+F+ +   ++
Sbjct: 388 SALIDIYFKCRDVEMARKIFDQ-RTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERM 446

Query: 428 LPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
               +T  SVL ACA    +  G++ H   + N +G    +   ++++D+  + GRL+ A
Sbjct: 447 RANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVG--SAIMDMYAKCGRLDLA 504

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
                G+  + D   W +++ +C  +   E A
Sbjct: 505 HQTFIGIS-DKDAVCWNSMITSCSQNGKPEEA 535



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 4/189 (2%)

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARC 377
           +Q  +  +        SIL   +    L  G Q H QM+   +  +  +   L+ MY  C
Sbjct: 35  LQFSIHNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLC 94

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           GA ++A+ IF +++L  +   WN MI G    G    AL  +  M     LP   TF  V
Sbjct: 95  GAFLDAKNIFYQLRLWCS-EPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYV 153

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           + AC     V  GR      +   G E  +   +SL+     +G + DA  L   MP   
Sbjct: 154 IKACGGLNSVALGRV-VHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMP-SK 211

Query: 498 DKAVWGALL 506
           D  +W  +L
Sbjct: 212 DGVLWNVML 220


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 211/656 (32%), Positives = 338/656 (51%), Gaps = 100/656 (15%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           +  ++K  E+++AR+LF++MP ++ VS N+MISGY+ S   G L EAR LFD M ER  V
Sbjct: 59  VGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKS---GNLGEARKLFDGMVERTAV 115

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMP---------------------------------- 87
           TW  +I GY++  + +EA  LF  M                                   
Sbjct: 116 TWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQI 175

Query: 88  ------ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                 +R +V  N ++  + ++  +  A + F  MP  DS S +A+++G  ++G  ++A
Sbjct: 176 IKLGYDSRLIVG-NTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKA 234

Query: 142 ARVLVKCGSR-------------CD--GGEDLVRAY------------------NTLIVG 168
             + V+  +              C   G +D+V                     N L+  
Sbjct: 235 VNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDF 294

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y +   V +ARKLFD++P            +++ VS+N +I  YA  G    A ++F ++
Sbjct: 295 YSKHDSVIDARKLFDEMP------------EQDGVSYNVIISGYAWDGKHKYAFDLFREL 342

Query: 229 ----LERDTFSWNTMISGYIHVLDMEEASNL----FVKMPHPDTLTWNAMVSGYAQIGNL 280
                +R  F + TM+S   + LD E    +     V     + L  N++V  YA+ G  
Sbjct: 343 QFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKF 402

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           E A   F  +  ++ V W +MI+       YE  ++LF +M+      D+ TF+S+L  S
Sbjct: 403 EEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRAS 462

Query: 341 SGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           + I  L LG Q+H  + K+  + +V   +AL+ +YA+CG+I +A   F+EM   +N+VSW
Sbjct: 463 ASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPD-RNIVSW 521

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           NAMI   A +G A   L+ FK M    + P  ++F+ VLSAC+H+GLVEEG  HF SM  
Sbjct: 522 NAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQ 581

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
            Y ++PR EH+AS+VD++ R GR  +A  L+  MP +PD+ +W ++L ACR+H N ELA+
Sbjct: 582 IYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELAR 641

Query: 520 VAAEALMKVEP-ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            AA+ L  +E   ++ PYV + N+YA  G+W++ ++V   M+   +KK   YSWV+
Sbjct: 642 RAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVE 697



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 150/295 (50%), Gaps = 15/295 (5%)

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
           + AR I +   + DT   N  +  ++   ++ +A  LF KMPH +T++ N M+SGY + G
Sbjct: 39  IDAR-IVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSG 97

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
           NL  A   F  M ++  V+W  +I G      ++ A +LF+QMQ  G +PD  TF ++LS
Sbjct: 98  NLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLS 157

Query: 339 MSSGIVDLHLGMQIHQMVTKTVI----PDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
             +G     +G QI Q+ T+ +       + + N L+  Y +   +  A  +F+EM  + 
Sbjct: 158 GCNG---HEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEID 214

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL--VEEGRQ 452
           + VS+NAMI G +  G   +A+ LF  M++  + PT  TF +VL  CA+ GL  +  G+Q
Sbjct: 215 S-VSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQ 271

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
              S V +      +    +L+D   +H  + DA  L   MP E D   +  ++ 
Sbjct: 272 -IHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP-EQDGVSYNVIIS 324



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 163/373 (43%), Gaps = 82/373 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           ++  Y K   +  ARKLFDEMP++D VS+NV+ISGY       +  + +Y FD+  E   
Sbjct: 291 LLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGY------AWDGKHKYAFDLFRELQF 344

Query: 58  -----------------RDCVTW----------------------NTVISGYAKTGEMEE 78
                             + + W                      N+++  YAK G+ EE
Sbjct: 345 TAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEE 404

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQ 134
           A  +F ++  R+ V W AMIS ++Q G     ++ F++M       D A+ ++L+     
Sbjct: 405 AEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASAS 464

Query: 135 NGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
              L    ++   ++K G   +     V + + L+  Y + G +++A + F ++P     
Sbjct: 465 IASLSLGKQLHSFIIKSGFMSN-----VFSGSALLDVYAKCGSIKDAVQTFQEMP----- 514

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVL 247
                   RNIVSWN+MI  YA+ G+  +  + F++M    L+ D+ S+  ++S   H  
Sbjct: 515 -------DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSG 567

Query: 248 DMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSM 301
            +EE    F  M       P    + ++V    + G    A      MP   + + W+S+
Sbjct: 568 LVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSV 627

Query: 302 IAGCETNKDYEGA 314
           +  C  +K+ E A
Sbjct: 628 LNACRIHKNQELA 640


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 197/549 (35%), Positives = 305/549 (55%), Gaps = 64/549 (11%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E++    N ++  Y + G ++EA  +F+++  ++  SWNAMI+G++++    +A+  F  
Sbjct: 60  EQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFRE 119

Query: 117 M------PG--------RDSASLSAL-----VSGLIQNGELDEAARVLVKCGSRCDGGED 157
           M      P         +  ASLSAL     V   I++G L+   RV          G  
Sbjct: 120 MCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRV----------GTA 169

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
           L+R Y       G+ G + EAR++FD +               +I+SW  MI  YA++G+
Sbjct: 170 LLRMY-------GKCGSINEARRIFDNL------------MNHDIISWTVMIGAYAQSGN 210

Query: 218 VVSAREIFEQMLERDTFSWNTMISGYIHVLDM--EEASNLFVKMPHP---------DTLT 266
              A  +  QM E++ F  N +   Y+ +L+    E +  +VK  H          D   
Sbjct: 211 GKEAYRLMLQM-EQEGFKPNAIT--YVSILNACASEGALKWVKRVHRHALDAGLELDVRV 267

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
             A+V  YA+ G+++ A   F RM  +++VSWN MI     +     A  LF+QMQ EG 
Sbjct: 268 GTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGC 327

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARI 385
           KPD   F SIL+  +    L    +IH+    + +  DV +  AL+ MY++ G+I +AR+
Sbjct: 328 KPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARV 387

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F+ MK+ +NVVSWNAMI G A HG   +ALE+F+ M +  V P  +TF++VLSAC+HAG
Sbjct: 388 VFDRMKV-RNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAG 446

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           LV+EGR  + +M   YGIEP + H   +VD++GR GRL +A   I  M  +PD+A WGAL
Sbjct: 447 LVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGAL 506

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           LG+CR + NVEL ++ A+  +K++P+N+  YVLL N+YA+ G+WD  + VR +M+   I+
Sbjct: 507 LGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIR 566

Query: 566 KPTGYSWVD 574
           K  G SW++
Sbjct: 567 KEPGRSWIE 575



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 136/524 (25%), Positives = 234/524 (44%), Gaps = 90/524 (17%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP-------- 56
           Y++   + +AR +FD + ++   SWN MI+GY+  + +   E+A  LF  M         
Sbjct: 73  YIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHA---EDAMRLFREMCHEGVQPNA 129

Query: 57  -------------------------------ERDCVTWNTVISGYAKTGEMEEALRLFNS 85
                                          E D      ++  Y K G + EA R+F++
Sbjct: 130 GTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDN 189

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
           +   +++SW  MI  + Q+G+   A     +M  ++    +A+    I N    E A   
Sbjct: 190 LMNHDIISWTVMIGAYAQSGNGKEAYRLMLQME-QEGFKPNAITYVSILNACASEGALKW 248

Query: 146 VKCGSR--CDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
           VK   R   D G +L VR    L+  Y + G +++AR +FD++ V            R++
Sbjct: 249 VKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKV------------RDV 296

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVK 258
           VSWN MI  +A+ G    A ++F QM     + D   + ++++       +E     +VK
Sbjct: 297 VSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALE-----WVK 351

Query: 259 MPHP---------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
             H          D     A+V  Y++ G+++ A   F RM  +N+VSWN+MI+G   + 
Sbjct: 352 KIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHG 411

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPIN 367
             + A+++F +M   G KPDR TF ++LS  S  G+VD      +       + PDV   
Sbjct: 412 LGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHC 471

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           N ++ +  R G ++EA++  + M +  +  +W A++G C ++G   E  EL    R  K+
Sbjct: 472 NCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYG-NVELGELVAKER-LKL 529

Query: 428 LP----TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI--EP 465
            P    TY+   ++ +      +V   R    +M+ E GI  EP
Sbjct: 530 DPKNAATYVLLSNIYAEAGKWDMVSWVR----TMMRERGIRKEP 569



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 179/379 (47%), Gaps = 46/379 (12%)

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF 256
           R ++N    N+++  Y + G +  AR +F+ ++++   SWN MI+GY+     E+A  LF
Sbjct: 58  RMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLF 117

Query: 257 VKMPHP-------------------DTLTW--------------------NAMVSGYAQI 277
            +M H                      L W                     A++  Y + 
Sbjct: 118 REMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKC 177

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
           G++  A   F  +   +++SW  MI     + + + A +L +QM+ EG KP+  T+ SIL
Sbjct: 178 GSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSIL 237

Query: 338 SMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
           +  +    L    ++H+      +  DV +  AL+ MYA+ G+I +AR++F+ MK +++V
Sbjct: 238 NACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMK-VRDV 296

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
           VSWN MIG  A HG   EA +LF  M++    P  I F+S+L+ACA AG +E  ++  + 
Sbjct: 297 VSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRH 356

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE 516
            ++  G+E  +    +LV +  + G ++DA  +   M    +   W A++     H    
Sbjct: 357 ALDS-GLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMISGLAQHG--- 411

Query: 517 LAQVAAEALMKVEPENSTP 535
           L Q A E   ++      P
Sbjct: 412 LGQDALEVFRRMTAHGVKP 430



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 102/231 (44%), Gaps = 43/231 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG------FLEEA------ 48
           ++  Y K   +  AR +FD M  RDVVSWNVMI G  +  G G      FL+        
Sbjct: 271 LVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMI-GAFAEHGRGHEAYDLFLQMQTEGCKP 329

Query: 49  -------------------------RYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
                                    R+  D   E D      ++  Y+K+G +++A  +F
Sbjct: 330 DAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVF 389

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD 139
           + M  RNVVSWNAMISG  Q+G   +A+E F RM       D  +  A++S     G +D
Sbjct: 390 DRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVD 449

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           E  R      ++  G E  V   N ++   G+ GR+ EA+   D + V+ D
Sbjct: 450 E-GRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPD 499


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 202/629 (32%), Positives = 325/629 (51%), Gaps = 76/629 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +I+ Y++      A ++F +MP RD V++N +ISG+      G  E A  +F+ M     
Sbjct: 184 VITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQC---GHGEHALEIFEEMQFSGL 240

Query: 57  ERDCVTWNTVISG-----------------------------------YAKTGEMEEALR 81
             DCVT +++++                                    Y K G++E AL 
Sbjct: 241 SPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALV 300

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +FNS    NVV WN M+  F Q  D+A + E F +M       +  +   ++       E
Sbjct: 301 IFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTRE 360

Query: 138 LDEAARVL---VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           +D   ++    VK G   D     +     LI  Y + G +E+AR++ + +         
Sbjct: 361 IDLGEQIHSLSVKTGFESD-----MYVSGVLIDMYSKYGWLEKARRVLEMLK-------- 407

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMISGYIHVLDME 250
               ++++VSW SMI  Y +      A   F++M +     D     + ISG   +  M 
Sbjct: 408 ----EKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMR 463

Query: 251 EA----SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           +     + ++V     D   WNA+V+ YA+ G +  A   F+ +  K+ ++WN +++G  
Sbjct: 464 QGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFA 523

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVP 365
            +  +E A+K+F++M   G K +  TF S LS S+ + ++  G QIH  V KT    +  
Sbjct: 524 QSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETE 583

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           + NALI++Y +CG+  +A++ F EM   +N VSWN +I  C+ HG   EAL+LF  M+  
Sbjct: 584 VGNALISLYGKCGSFEDAKMEFSEMSE-RNEVSWNTIITSCSQHGRGLEALDLFDQMKKE 642

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            + P  +TFI VL+AC+H GLVEEG  +FKSM +EYGI PR +H+A ++DI GR G+L+ 
Sbjct: 643 GIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDR 702

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A   I+ MP   D  VW  LL AC+VH N+E+ + AA+ L+++EP +S  YVLL N YA 
Sbjct: 703 AKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAV 762

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             +W + ++VR +M+   ++K  G SW++
Sbjct: 763 TEKWANRDQVRKMMRDRGVRKEPGRSWIE 791



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 153/553 (27%), Positives = 244/553 (44%), Gaps = 105/553 (18%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
           +  N +I  Y+K G +  A R+F  + AR+ VSW AM+SG+ QNG    A+  + +M   
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 118 -----PGRDSASLSALVSG-LIQNGELDEAA-----------------RVLVKCGS---- 150
                P   S+ LS+     L   G L  A                   + ++CGS    
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLA 197

Query: 151 ---RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV-----NC------------- 189
               CD        +NTLI G+ Q G  E A ++F+++       +C             
Sbjct: 198 ERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASL 257

Query: 190 -DRGEG----NVRFKRNIVS----WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            D  +G    +  FK  I S      S++  Y K GDV +A  IF      +   WN M+
Sbjct: 258 GDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLML 317

Query: 241 SGYIHVLDMEEASNLFVKMP----HPDTLTWNAM-------------------------- 270
             +  + D+ ++  LF +M      P+  T+  +                          
Sbjct: 318 VAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFE 377

Query: 271 ----VSG-----YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
               VSG     Y++ G LE A    + + +K++VSW SMIAG   ++  + A+  F +M
Sbjct: 378 SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEM 437

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAI 380
           Q  G  PD    +S +S  +GI  +  G+QIH ++       DV I NAL+ +YARCG I
Sbjct: 438 QKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRI 497

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
            EA   FEE++  K+ ++WN ++ G A  G   EAL++F  M    V     TF+S LSA
Sbjct: 498 REAFSSFEEIE-HKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSA 556

Query: 441 CAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
            A+   +++G+Q H + +   +  E  + +  +L+ + G+ G  EDA      M  E ++
Sbjct: 557 SANLAEIKQGKQIHARVIKTGHSFETEVGN--ALISLYGKCGSFEDAKMEFSEMS-ERNE 613

Query: 500 AVWGALLGACRVH 512
             W  ++ +C  H
Sbjct: 614 VSWNTIITSCSQH 626



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 173/384 (45%), Gaps = 50/384 (13%)

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDME 250
           RG G  R   N+     +I  Y+K G V+ AR +FE++  RD  SW  M+SGY      E
Sbjct: 71  RGLGKYRIVGNL-----LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGE 125

Query: 251 EASNLFVKM------PHPDTLT---------------------------------WNAMV 271
           EA  L+ +M      P P  L+                                  NA++
Sbjct: 126 EALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVI 185

Query: 272 SGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
           + Y + G+  LA   F  MP ++ V++N++I+G       E A+++F +MQ  G  PD  
Sbjct: 186 TLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCV 245

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEM 390
           T SS+L+  + + DL  G Q+H  + K  I  D  +  +L+ +Y +CG +  A +IF   
Sbjct: 246 TISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
               NVV WN M+          ++ ELF  M++  + P   T+  +L  C     ++ G
Sbjct: 306 D-RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG 364

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
            Q   S+  + G E  +     L+D+  ++G LE A  +++ M  E D   W +++    
Sbjct: 365 EQ-IHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAGYV 422

Query: 511 VHNNVELAQVAAEALMK--VEPEN 532
            H   + A  A + + K  + P+N
Sbjct: 423 QHECCKDALAAFKEMQKCGIWPDN 446


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 208/626 (33%), Positives = 320/626 (51%), Gaps = 70/626 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS----RGSGFLEEARYLFDIMP 56
           +I  Y     +  AR++FDE+P RD + WNVM+ GY+ S       G   E R  + ++ 
Sbjct: 153 LIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVN 212

Query: 57  --------------------------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                                           E D    NT+++ Y+K G +  A +LFN
Sbjct: 213 SVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFN 272

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
           +MP  + V+WN +I+G++QNG    A   F+ M       DS + ++ +  ++++G L  
Sbjct: 273 TMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRH 332

Query: 141 AARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
              V   +V+     D     V   + LI  Y + G VE ARK+F +             
Sbjct: 333 CKEVHSYIVRHRVPFD-----VYLKSALIDVYFKGGDVEMARKIFQQ------------N 375

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEAS 253
              ++    +MI  Y   G  + A   F  +++     ++ +  +++     V  ++   
Sbjct: 376 ILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGK 435

Query: 254 NLFV----KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            L      K         +A+   YA+ G L+LA +FF+RM  ++ V WNSMI+    N 
Sbjct: 436 ELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNG 495

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINN 368
             E AI LF QM + G K D  + SS LS ++ +  L+ G ++H  V +     D  + +
Sbjct: 496 KPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVAS 555

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
            LI MY++CG +  A  +F  M   KN VSWN++I    +HG   E L+L+  M    + 
Sbjct: 556 TLIDMYSKCGNLALAWCVFNLMD-GKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIH 614

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P ++TF+ ++SAC HAGLV+EG  +F  M  EYGI  R+EH+A +VD+ GR GR+ +A D
Sbjct: 615 PDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFD 674

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
            IK MPF PD  VWG LLGACR+H NVELA++A+  L++++P+NS  YVLL N++AD G 
Sbjct: 675 TIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGE 734

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVD 574
           W    +VR LMK   ++K  GYSW+D
Sbjct: 735 WASVLKVRSLMKEKGVQKIPGYSWID 760



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 220/479 (45%), Gaps = 44/479 (9%)

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
           C   + V+  Y   G   +A  LF  +  R  + WN MI G    G    A+ F+ +M G
Sbjct: 46  CAPSSRVLGLYVLCGRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLG 105

Query: 120 RDSASLSALVSGLIQN-GELDEAARVLV-KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
            + +        +I+  G L+     +V    +R  G    + A + LI  Y   G + +
Sbjct: 106 SNVSPDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRD 165

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           AR++FD++P+            R+ + WN M+  Y K+GD  +A   F +M  R ++S  
Sbjct: 166 ARRVFDELPL------------RDTILWNVMLRGYVKSGDFDNAIGTFCEM--RTSYSMV 211

Query: 238 TMISGYIHVLDMEEASNLFVKMPHP-----------DTLTWNAMVSGYAQIGNLELALDF 286
             ++ Y  +L +      F                 D    N +V+ Y++ GNL  A   
Sbjct: 212 NSVT-YTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKL 270

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIV 344
           F  MPQ + V+WN +IAG   N   + A  LF  M   G KPD  TF+S L   + SG  
Sbjct: 271 FNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESG-- 328

Query: 345 DLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
            L    ++H  + +  +P DV + +ALI +Y + G +  AR IF++  +L +V    AMI
Sbjct: 329 SLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQ-NILVDVAVCTAMI 387

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
            G   HG   +A+  F+ +    ++   +T  SVL ACA    ++ G++     ++ + +
Sbjct: 388 SGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKE-----LHCHIL 442

Query: 464 EPRIEHF----ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
           + R+E+     +++ D+  + GRL+ A +  + M  + D   W +++ +   +   E+A
Sbjct: 443 KKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMS-DRDSVCWNSMISSFSQNGKPEIA 500


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 207/688 (30%), Positives = 344/688 (50%), Gaps = 130/688 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG-----SGFLEEAR------ 49
           M++GY K   ++ A +LF  MP RDV SWN ++SGY  SR        FL   R      
Sbjct: 97  MLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWP 156

Query: 50  ---YLFDIMPERDCVTWNT-----------------------VISGYAKTGEMEEALRLF 83
               L   M     + W++                       ++  + + G ++ A RLF
Sbjct: 157 NAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLF 216

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
             +    +   N+M++G+++   V +A+E FD MP RD  S + +VS L Q+G + EA  
Sbjct: 217 VRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALD 276

Query: 144 VLVKC---GSRCDG------------------GEDL----------VRAY--NTLIVGYG 170
           ++V     G R D                   G+ L          +  Y  + L+  Y 
Sbjct: 277 MVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYA 336

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-- 228
           + G  +EA+ +F+ +              RN V+W  +I  + + G    + E+F QM  
Sbjct: 337 KSGCFKEAKGVFNSL------------HDRNNVAWTVLISGFLQYGCFTESVELFNQMRA 384

Query: 229 --LERDTFSWNTMISG-----------------------------------YIHVLDMEE 251
             +  D F+  T+ISG                                   Y    +++ 
Sbjct: 385 ELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQS 444

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           A  +F  M   D ++W +M++ Y+Q+GN+  A +FF  M +KN+++WN+M+     +   
Sbjct: 445 AEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAE 504

Query: 312 EGAIKLF-IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV----IPDVPI 366
           E  ++++ + +  E  +PD  T+ ++     G  DL       Q++ +TV    I D  +
Sbjct: 505 EDGLRMYKVMLSEEYVRPDWVTYVTLF---KGCADLGANKLGDQIIGRTVKVGLIIDTSV 561

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            NA+ITMY++CG I+EAR +F+ +  +K++VSWNAMI G + HG   +A+E+F  +    
Sbjct: 562 ANAVITMYSKCGRILEARKVFDFLN-VKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRG 620

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
             P YI++++VLS C+H+GLV+EG+ +F  M   + I P +EHF+ +VD++GR G L +A
Sbjct: 621 AKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEA 680

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
            DLI  MP +P   VWGALL AC++H N ELA++AA+ + +++  +S  Y+L+  +YAD 
Sbjct: 681 KDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADA 740

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           G+ DD+ ++R LM+   IKK  GYSW++
Sbjct: 741 GKSDDSAQIRKLMRDKGIKKNPGYSWME 768



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 114/498 (22%), Positives = 216/498 (43%), Gaps = 69/498 (13%)

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           + L+   +  G L +A R+L+      D     V  +N ++ GY + GR+ +A +LF ++
Sbjct: 63  NTLLHAYLSCGALSDARRLLLM-----DIAHPNVITHNVMLNGYAKLGRLSDAVELFGRM 117

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW--------- 236
           P             R++ SWN+++  Y ++   + + E F  M  R   SW         
Sbjct: 118 PA------------RDVASWNTLMSGYFQSRQYLVSLETFLSM-HRSGDSWPNAFTLACA 164

Query: 237 --------------------------------NTMISGYIHVLDMEEASNLFVKMPHPDT 264
                                             ++  ++    ++ AS LFV++  P  
Sbjct: 165 MKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTM 224

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
              N+M++GY +   ++ AL+ F  MP++++VSWN M++    +     A+ + + MQ +
Sbjct: 225 FCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSK 284

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP--DVPINNALITMYARCGAIVE 382
           G + D  T++S L+  + +  L  G Q+H  V +  +P  D  + +AL+ +YA+ G   E
Sbjct: 285 GVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN-LPHIDPYVASALVELYAKSGCFKE 343

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           A+ +F  +   +N V+W  +I G   +G  TE++ELF  MR+  +        +++S C 
Sbjct: 344 AKGVFNSLH-DRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCC 402

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
               +  GRQ   S+  + G    +    SL+ +  +   L+ A  + + M  E D   W
Sbjct: 403 SRMDLCLGRQ-LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMN-EKDIVSW 460

Query: 503 GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
            +++ A     NV  A+   E    +  +N   +  +   Y   G  +D   +  +M S 
Sbjct: 461 TSMITAYSQVGNVAKAR---EFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSE 517

Query: 563 NIKKPTGYSWVD-FSPCG 579
              +P   ++V  F  C 
Sbjct: 518 EYVRPDWVTYVTLFKGCA 535



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 152/313 (48%), Gaps = 39/313 (12%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFV-KMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
           L    F  NT++  Y+    + +A  L +  + HP+ +T N M++GYA++G L  A++ F
Sbjct: 55  LASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELF 114

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK-PDRHTFSSILSMSSGIVDL 346
            RMP +++ SWN++++G   ++ Y  +++ F+ M   G+  P+  T +  +  S G +  
Sbjct: 115 GRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK-SCGALGW 173

Query: 347 H-LGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMK---------LL-- 393
           H L +Q+  MV K     D  +  AL+ M+ RCGA+  A  +F  +K         +L  
Sbjct: 174 HSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAG 233

Query: 394 -------------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
                              ++VVSWN M+   +  G   EAL++   M+S  V     T+
Sbjct: 234 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 293

Query: 435 ISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
            S L+ACA    +  G+Q H + + N   I+P +   ++LV++  + G  ++A  +   +
Sbjct: 294 TSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA--SALVELYAKSGCFKEAKGVFNSL 351

Query: 494 PFEPDKAVWGALL 506
             + +   W  L+
Sbjct: 352 -HDRNNVAWTVLI 363


>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 575

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 190/535 (35%), Positives = 301/535 (56%), Gaps = 38/535 (7%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF-- 114
           +RD    N ++  YAK G +E A +LF+ MP R V  WN MISG+ + G+   A   F  
Sbjct: 59  DRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHV 118

Query: 115 --DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
             D+   R+  + + +++G  + G L  A     K   R       V ++N ++ GY Q 
Sbjct: 119 MGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERS------VVSWNAMLSGYAQG 172

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           G  EE  +LF+ +        GNV  + +  +W ++I   +  GD   +  I  ++ ++ 
Sbjct: 173 GAPEETIRLFNDM-----LSPGNV--QPDETTWATVISSCSSLGDPCLSESIVRKLDDKV 225

Query: 233 TFSWNTMISGYIHVLDM-------EEASNLFVKM---PHPDTLTWNAMVSGYAQIGNLEL 282
            F  N  +     +LDM       E A  +F ++    +  ++ WNAM+S YA++G+L  
Sbjct: 226 GFRPNYFVK--TALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPS 283

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM--QVEGEKPDRHTFSSILSMS 340
           A   F +MPQ++ VSWNSMIAG   N +   AIKLF +M    +  KPD  T  S+ S  
Sbjct: 284 AKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSAC 343

Query: 341 SGIVDLHLG-MQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
             + +L LG   +  +    +   + + N+LI MY+RCG++ +A +IF+EM   +++VS+
Sbjct: 344 GHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMAT-RDLVSY 402

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N +I G A HG   E++EL   M+   + P  IT+I++L+AC+HAGL++EG++ F+S+  
Sbjct: 403 NTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKF 462

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
                P ++H+A ++D++GR GRLE+AM LI+ MP EP   ++G+LL A  +H  VEL +
Sbjct: 463 -----PDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGE 517

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +AA  L KVEP NS  Y LL N+YA  GRW + ++VR  M+   +KK TG SW++
Sbjct: 518 LAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGLSWLE 572



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 155/509 (30%), Positives = 247/509 (48%), Gaps = 93/509 (18%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE----RDC 60
           Y K   +  ARKLFDEMP R V  WNVMISGY      G  EEA  LF +M +    R+ 
Sbjct: 72  YAKYGPIEFARKLFDEMPDRTVADWNVMISGYWK---CGNEEEASTLFHVMGDQEISRNV 128

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           +TW T+I+G+AK G ++ A   F+ MP R+VVSWNAM+SG+ Q G     I  F+ M   
Sbjct: 129 ITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDM--- 185

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDG--GEDLVRAYN-------------TL 165
                  L  G +Q  E   A  V+  C S  D    E +VR  +              L
Sbjct: 186 -------LSPGNVQPDETTWAT-VISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTAL 237

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           +  + + G +E A K+F+++          V   R+ V WN+MI  YA+ GD+ SA+ +F
Sbjct: 238 LDMHAKCGNLEAAHKIFEQL---------GVYKYRSSVPWNAMISAYARVGDLPSAKHLF 288

Query: 226 EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTLT------------- 266
           ++M +RDT SWN+MI+GY    +  +A  LF +M        PD +T             
Sbjct: 289 DKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGE 348

Query: 267 ----------------------WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
                                 +N++++ Y++ G+++ A+  F+ M  ++LVS+N++I+G
Sbjct: 349 LGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISG 408

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV 364
              +     +I+L  +M+ +G +PDR T+ +IL+  S    L  G ++ + +     PDV
Sbjct: 409 FAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIK---FPDV 465

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL--FKSM 422
                +I M  R G + EA  + + M +  +   + +++   + H    + +EL    + 
Sbjct: 466 DHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIH----KQVELGELAAA 521

Query: 423 RSFKVLPTYITFISVLSAC-AHAGLVEEG 450
           + FKV P      ++LS   A AG  +EG
Sbjct: 522 KLFKVEPHNSGNYALLSNIYASAGRWKEG 550



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 116/479 (24%), Positives = 199/479 (41%), Gaps = 119/479 (24%)

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF  +  +CD        K N  S+ S++M  A +  ++    + +   +RD +  N ++
Sbjct: 18  LFKHMLQHCD-------IKPN-ASFYSVMMKSAGSESMLFLAHVLKSGYDRDHYVRNGIL 69

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY-------------------------- 274
             Y     +E A  LF +MP      WN M+SGY                          
Sbjct: 70  GIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVI 129

Query: 275 ---------AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
                    A+ GNL+ A  +F +MP++++VSWN+M++G       E  I+LF  M   G
Sbjct: 130 TWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPG 189

Query: 326 E-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV--IPDVPINNALITMYARCGAIVE 382
             +PD  T+++++S  S + D  L   I + +   V   P+  +  AL+ M+A+CG +  
Sbjct: 190 NVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEA 249

Query: 383 ARIIFEEMKLLK---------------------------------NVVSWNAMIGGCASH 409
           A  IFE++ + K                                 + VSWN+MI G   +
Sbjct: 250 AHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQN 309

Query: 410 GFATEALELFKSMRSFK--VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
           G + +A++LF+ M S +    P  +T +SV SAC H G +  G     S++    I+  I
Sbjct: 310 GESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAV-SILKVNHIQISI 368

Query: 468 EHFASLVDIVGRHGRLEDAM---------------DLIKGMP------------------ 494
             + SL+++  R G ++DA+                LI G                    
Sbjct: 369 SVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKED 428

Query: 495 -FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
             EPD+  + A+L AC     ++  Q   E++   + ++   Y  + +M    GR ++A
Sbjct: 429 GIEPDRITYIAILTACSHAGLLDEGQRLFESIKFPDVDH---YACMIDMLGRAGRLEEA 484


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 202/629 (32%), Positives = 325/629 (51%), Gaps = 76/629 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +I+ Y++      A ++F +MP RD V++N +ISG+      G  E A  +F+ M     
Sbjct: 184 VITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQC---GHGEHALEIFEEMQFSGL 240

Query: 57  ERDCVTWNTVISG-----------------------------------YAKTGEMEEALR 81
             DCVT +++++                                    Y K G++E AL 
Sbjct: 241 SPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALV 300

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +FNS    NVV WN M+  F Q  D+A + E F +M       +  +   ++       E
Sbjct: 301 IFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTRE 360

Query: 138 LDEAARVL---VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           +D   ++    VK G   D     +     LI  Y + G +E+AR++ + +         
Sbjct: 361 IDLGEQIHSLSVKTGFESD-----MYVSGVLIDMYSKYGWLEKARRVLEMLK-------- 407

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMISGYIHVLDME 250
               ++++VSW SMI  Y +      A   F++M +     D     + ISG   +  M 
Sbjct: 408 ----EKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMR 463

Query: 251 EA----SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           +     + ++V     D   WNA+V+ YA+ G +  A   F+ +  K+ ++WN +++G  
Sbjct: 464 QGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFA 523

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVP 365
            +  +E A+K+F++M   G K +  TF S LS S+ + ++  G QIH  V KT    +  
Sbjct: 524 QSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETE 583

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           + NALI++Y +CG+  +A++ F EM   +N VSWN +I  C+ HG   EAL+LF  M+  
Sbjct: 584 VGNALISLYGKCGSFEDAKMEFSEMSE-RNEVSWNTIITSCSQHGRGLEALDLFDQMKKE 642

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            + P  +TFI VL+AC+H GLVEEG  +FKSM +EYGI PR +H+A ++DI GR G+L+ 
Sbjct: 643 GIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDR 702

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A   I+ MP   D  VW  LL AC+VH N+E+ + AA+ L+++EP +S  YVLL N YA 
Sbjct: 703 AKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAV 762

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             +W + ++VR +M+   ++K  G SW++
Sbjct: 763 TEKWANRDQVRKMMRDRGVRKEPGRSWIE 791



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 153/553 (27%), Positives = 244/553 (44%), Gaps = 105/553 (18%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
           +  N +I  Y+K G +  A R+F  + AR+ VSW AM+SG+ QNG    A+  + +M   
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 118 -----PGRDSASLSALVSG-LIQNGELDEAA-----------------RVLVKCGS---- 150
                P   S+ LS+     L   G L  A                   + ++CGS    
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLA 197

Query: 151 ---RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV-----NC------------- 189
               CD        +NTLI G+ Q G  E A ++F+++       +C             
Sbjct: 198 ERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASL 257

Query: 190 -DRGEG----NVRFKRNIVS----WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            D  +G    +  FK  I S      S++  Y K GDV +A  IF      +   WN M+
Sbjct: 258 GDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLML 317

Query: 241 SGYIHVLDMEEASNLFVKMP----HPDTLTWNAM-------------------------- 270
             +  + D+ ++  LF +M      P+  T+  +                          
Sbjct: 318 VAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFE 377

Query: 271 ----VSG-----YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
               VSG     Y++ G LE A    + + +K++VSW SMIAG   ++  + A+  F +M
Sbjct: 378 SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEM 437

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAI 380
           Q  G  PD    +S +S  +GI  +  G+QIH ++       DV I NAL+ +YARCG I
Sbjct: 438 QKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRI 497

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
            EA   FEE++  K+ ++WN ++ G A  G   EAL++F  M    V     TF+S LSA
Sbjct: 498 REAFSSFEEIE-HKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSA 556

Query: 441 CAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
            A+   +++G+Q H + +   +  E  + +  +L+ + G+ G  EDA      M  E ++
Sbjct: 557 SANLAEIKQGKQIHARVIKTGHSFETEVGN--ALISLYGKCGSFEDAKMEFSEMS-ERNE 613

Query: 500 AVWGALLGACRVH 512
             W  ++ +C  H
Sbjct: 614 VSWNTIITSCSQH 626



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 173/384 (45%), Gaps = 50/384 (13%)

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDME 250
           RG G  R   N+     +I  Y+K G V+ AR +FE++  RD  SW  M+SGY      E
Sbjct: 71  RGLGKYRIVGNL-----LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGE 125

Query: 251 EASNLFVKM------PHPDTLT---------------------------------WNAMV 271
           EA  L+ +M      P P  L+                                  NA++
Sbjct: 126 EALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVI 185

Query: 272 SGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
           + Y + G+  LA   F  MP ++ V++N++I+G       E A+++F +MQ  G  PD  
Sbjct: 186 TLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCV 245

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEM 390
           T SS+L+  + + DL  G Q+H  + K  I  D  +  +L+ +Y +CG +  A +IF   
Sbjct: 246 TISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
               NVV WN M+          ++ ELF  M++  + P   T+  +L  C     ++ G
Sbjct: 306 D-RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG 364

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
            Q   S+  + G E  +     L+D+  ++G LE A  +++ M  E D   W +++    
Sbjct: 365 EQ-IHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAGYV 422

Query: 511 VHNNVELAQVAAEALMK--VEPEN 532
            H   + A  A + + K  + P+N
Sbjct: 423 QHECCKDALAAFKEMQKCGIWPDN 446


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 213/735 (28%), Positives = 344/735 (46%), Gaps = 177/735 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K   +  +R+LFD+MP+RD+ +WN ++  Y  +     LE+A  LF  MPER+ 
Sbjct: 46  LIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASE---LEDAHVLFAEMPERNI 102

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR------------------------------- 89
           V+WNT+IS   + G  ++AL ++  M                                  
Sbjct: 103 VSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASVLSACGALVDVECGRRCHGI 162

Query: 90  --------NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                   N+   NA++  + +   + +AI+ F  +P  +  S +A++ GL  + +++EA
Sbjct: 163 SIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEA 222

Query: 142 ARVL-----------------------------------------------VKCGSRCDG 154
            R+                                                V C +   G
Sbjct: 223 FRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHG 282

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA- 213
            E  +   N+L+  Y + G ++ A  +F  +P            + ++VSWN MI  Y  
Sbjct: 283 FESDLHLNNSLLDMYAKNGNMDSAEMIFVNMP------------EVSVVSWNVMIAGYGQ 330

Query: 214 ----------------------------------KAGDVVSAREIFEQMLERDTFSWNTM 239
                                             K+GD+ + R++F+ M      SWNT+
Sbjct: 331 KSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTI 390

Query: 240 ISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSG---------------------- 273
           +SGY    + +EA  LF +M     HPD  T   ++S                       
Sbjct: 391 LSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVF 450

Query: 274 -------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                        Y++ G +E+A   F R+ + ++V WNSM+AG   N   + A   F +
Sbjct: 451 RTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKK 510

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGA 379
           M+ +G  P + +++++LS  + +  L  G Q+H Q+  +  + D  + +ALI MY++CG 
Sbjct: 511 MREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGD 570

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           +  AR +F +M L KN V+WN MI G A +G   EA+ L++ M      P  ITF++VL+
Sbjct: 571 VDAARWVF-DMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLT 629

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           AC+H+GLV+ G + F SM  E+G+EP ++H+  ++D +GR GRL +A  LI  MP + D 
Sbjct: 630 ACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDP 689

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
            +W  LL +CRV+ +V LA+ AAE L  ++P+NS PYVLL N+Y+ +GRWDDA  VR LM
Sbjct: 690 IIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELM 749

Query: 560 KSNNIKKPTGYSWVD 574
             N + K  GYSW++
Sbjct: 750 SYNQVVKDPGYSWIE 764



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 170/373 (45%), Gaps = 23/373 (6%)

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
           AG ++ A  +    L  DTF  N +I  Y     ++ +  LF +MP  D  TWNA++  Y
Sbjct: 23  AGKLIHAH-MLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAY 81

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
            +   LE A   F  MP++N+VSWN++I+    N   + A+ ++ +M  EG  P   T +
Sbjct: 82  CKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLA 141

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLL 393
           S+LS    +VD+  G + H +  K  +  ++ + NAL+ MYA+C  I +A   F ++   
Sbjct: 142 SVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVP-E 200

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR-- 451
            N VS+ AM+GG A      EA  LF+ M   ++    ++  SVL  C+  G  E G   
Sbjct: 201 PNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHD 260

Query: 452 -----------QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
                      Q    +  ++G E  +    SL+D+  ++G ++ A  +   MP E    
Sbjct: 261 SNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMP-EVSVV 319

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY-NMYADVGRWDDANEVRLLM 559
            W  ++     +     +  A E L +++     P  + Y NM     +  D    R + 
Sbjct: 320 SWNVMIAG---YGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMF 376

Query: 560 KSNNIKKPTGYSW 572
             + +  P+  SW
Sbjct: 377 --DGMSSPSLSSW 387


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 223/711 (31%), Positives = 344/711 (48%), Gaps = 139/711 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGF--- 44
           +++  V+  ++  A++ F     RDVV +N +I+              Y   R  G    
Sbjct: 270 LVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALN 329

Query: 45  ----------------LEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEALRLFN 84
                           LE  + +   + E     D    N +IS YA+ G++ +A  LF 
Sbjct: 330 RTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFY 389

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDS--------ASLSA--- 127
           +MP R+++SWNA+I+G+ +  D   A+  + +M      PGR +        A+ SA   
Sbjct: 390 TMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYAD 449

Query: 128 --------LVSGLIQNGELDEA-ARVLVKCGSRCDG--------GEDLVRAYNTLIVGYG 170
                   L SG+  NG L  A   +  +CGS  +           D++ ++N++I G+ 
Sbjct: 450 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVI-SWNSMIAGHA 508

Query: 171 QRGRVEEARKLFDKI------PVN---------CDRGE---------GNVR---FKRNIV 203
           Q G  E A KLF ++      P N         C   E         G +     + ++ 
Sbjct: 509 QHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVN 568

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP- 262
             N++I  Y + G +  AR +F  +  RD  SW  MI G     +  +A  LF +M +  
Sbjct: 569 LGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEG 628

Query: 263 --------------------------------------DTLTWNAMVSGYAQIGNLELAL 284
                                                 DT   NA++S Y++ G++  A 
Sbjct: 629 FRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAR 688

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
           + F +MP +++VSWN +IAG   N   + A++   QMQ +   P++ +F S+L+  S   
Sbjct: 689 EVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFS 748

Query: 345 DLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
            L  G ++H ++V + +  DV +  ALI+MYA+CG+  EA+ +F+ + + KNVV+WNAMI
Sbjct: 749 ALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNI-IEKNVVTWNAMI 807

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
              A HG A++AL  F  M    + P   TF S+LSAC HAGLV EG Q F SM +EYG+
Sbjct: 808 NAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGV 867

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE 523
            P IEH+  LV ++GR  R ++A  LI  MPF PD AVW  LLGACR+H N+ LA+ AA 
Sbjct: 868 LPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAAN 927

Query: 524 ALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             +K+   N   Y+LL N+YA  GRWDD  ++R +M+   I+K  G SW++
Sbjct: 928 NALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIE 978



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 166/567 (29%), Positives = 275/567 (48%), Gaps = 84/567 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +I+ YVK R +  A ++F EMP+RDV+SWN +IS Y      GF ++A  LF+ M     
Sbjct: 68  LINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQ---GFKKKAFQLFEEMQNAGF 124

Query: 57  -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                                              +RD    N+++S Y K G++  A +
Sbjct: 125 IPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQ 184

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F  +  R+VVS+N M+  + Q   V   +  F +M       D  +   L+        
Sbjct: 185 VFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSM 244

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           LDE  R+    V+ G   D     +R    L+    + G V+ A++ F        +G  
Sbjct: 245 LDEGKRIHKLTVEEGLNSD-----IRVGTALVTMCVRCGDVDSAKQAF--------KGTA 291

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASN 254
           +    R++V +N++I   A+ G  V A E + +M   D  + N   + Y+ +L+    S 
Sbjct: 292 D----RDVVVYNALIAALAQHGHNVEAFEQYYRM-RSDGVALNR--TTYLSILNACSTSK 344

Query: 255 LFV--KMPHP---------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                K+ H          D    NA++S YA+ G+L  A + F  MP+++L+SWN++IA
Sbjct: 345 ALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIA 404

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-P 362
           G    +D   A++L+ QMQ EG KP R TF  +LS  +       G  IH+ + ++ I  
Sbjct: 405 GYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKS 464

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           +  + NAL+ MY RCG+++EA+ +FE  +  ++V+SWN+MI G A HG    A +LF+ M
Sbjct: 465 NGHLANALMNMYRRCGSLMEAQNVFEGTQ-ARDVISWNSMIAGHAQHGSYETAYKLFQEM 523

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
           ++ ++ P  ITF SVLS C +   +E G+Q     + E G++  +    +L+++  R G 
Sbjct: 524 QNEELEPDNITFASVLSGCKNPEALELGKQ-IHGRITESGLQLDVNLGNALINMYIRCGS 582

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGAC 509
           L+DA ++   +    D   W A++G C
Sbjct: 583 LQDARNVFHSLQHR-DVMSWTAMIGGC 608



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 142/520 (27%), Positives = 250/520 (48%), Gaps = 56/520 (10%)

Query: 44  FLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMIS 99
            L EA+ +   M E     D    N +I+ Y K   + +A ++F  MP R+V+SWN++IS
Sbjct: 42  LLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLIS 101

Query: 100 GFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LVKCGSRC 152
            + Q G    A + F+ M       +  +  ++++      EL+   ++   ++K G + 
Sbjct: 102 CYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQR 161

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
           D      R  N+L+  YG+ G +  AR++F  I              R++VS+N+M+  Y
Sbjct: 162 D-----PRVQNSLLSMYGKCGDLPRARQVFAGIS------------PRDVVSYNTMLGLY 204

Query: 213 AKAGDVVSAREIFEQMLER-------------DTFSWNTMIS--GYIHVLDMEEASNLFV 257
           A+   V     +F QM                D F+  +M+     IH L +EE  N   
Sbjct: 205 AQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLN--- 261

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                D     A+V+   + G+++ A   FK    +++V +N++IA    +     A + 
Sbjct: 262 ----SDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQ 317

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYAR 376
           + +M+ +G   +R T+ SIL+  S    L  G  IH  +++     DV I NALI+MYAR
Sbjct: 318 YYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYAR 377

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG + +AR +F  M   ++++SWNA+I G A      EA+ L+K M+S  V P  +TF+ 
Sbjct: 378 CGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLH 436

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           +LSACA++    +G+   + ++   GI+       +L+++  R G L +A ++ +G    
Sbjct: 437 LLSACANSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR 495

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALM--KVEPENST 534
            D   W +++     H + E A    + +   ++EP+N T
Sbjct: 496 -DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNIT 534


>gi|302761102|ref|XP_002963973.1| hypothetical protein SELMODRAFT_81279 [Selaginella moellendorffii]
 gi|300167702|gb|EFJ34306.1| hypothetical protein SELMODRAFT_81279 [Selaginella moellendorffii]
          Length = 640

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 189/572 (33%), Positives = 306/572 (53%), Gaps = 39/572 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR---DVVSWNVMISGYISSRGSGFLEEARYLFDIMPE 57
           M++ Y     + +A++ F  MP +   D V+ N++I  +      G + EA+ LFD  P+
Sbjct: 83  MLAAYAHNGHLDEAKRFFAAMPDKNRSDPVACNILIGVHSQC---GEIGEAKRLFDQAPD 139

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           R  V++NT+I  +A++G +  A  +F+SMP R++VSWN++IS   ++G V    E FDR 
Sbjct: 140 RTVVSYNTLIQAFARSGHLIYAKWMFHSMPERSIVSWNSIISACGEHGLVQETKEIFDRA 199

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P R+  S +A++     +G L +A+ +      R       V ++  +IVGY   G +E 
Sbjct: 200 PQRNVISWNAMIQAYSSSGHLGDASALFQTMRERS------VISWTVMIVGYAHSGELES 253

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           A   FD++P            +R + +WN++I  + ++ ++ +A  +F+ M ER T SWN
Sbjct: 254 ASAAFDRMP------------ERGVAAWNAIISAHGQSKNLTAAERLFDSMPERSTVSWN 301

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
            M+       +++ A  LF ++P  D ++WN  V  +A++G+++ A+  F +MPQ N +S
Sbjct: 302 AMLQLLADSGEIDRAKELFARVPRRDVISWNTAVKLHAELGDVDGAMGLFHKMPQWNSIS 361

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL----HLGMQ-- 351
           WN +   C +    E +  L+  M V G +      S+ +S ++ +  L    HL     
Sbjct: 362 WNILFHACGS---VEESKHLYDTMPVHGIESWTTMLSTSVSETTILTVLAHNGHLSAARE 418

Query: 352 -IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
             H M   T++       A++  YA+ G + EA+ +F+ M    + VSWNAM+   A +G
Sbjct: 419 CFHSMAETTIVA----QTAMLAAYAQNGHVKEAKELFDSMPR-TSFVSWNAMVTAYAQNG 473

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
              EALELF SM      P  +TF S+L A +H G+ + G  +F SMV +Y + P  +HF
Sbjct: 474 HPREALELFHSMVLHGERPDEMTFSSILLASSHNGMADRGWSYFASMVPDYCVRPVRDHF 533

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
             +VD  GR GRL +AM+L + MPFE D  VW +LLGACR   +VE     A  L + +P
Sbjct: 534 YCMVDAFGRAGRLAEAMELAERMPFEADVVVWRSLLGACRTSRDVETGAFVAHKLFEADP 593

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
            +S  Y +L  MYA  G  D+  +V  LM+ N
Sbjct: 594 GDSVAYTILAGMYATAGMKDEEAKVMKLMEQN 625



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 93/230 (40%), Gaps = 51/230 (22%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
            ++ AR+ F  M +  +V+   M++ Y  +   G ++EA+ LFD MP    V+WN +++ 
Sbjct: 412 HLSAARECFHSMAETTIVAQTAMLAAYAQN---GHVKEAKELFDSMPRTSFVSWNAMVTA 468

Query: 70  YAKTGEMEEALRLFNSM------------------------------------------P 87
           YA+ G   EAL LF+SM                                          P
Sbjct: 469 YAQNGHPREALELFHSMVLHGERPDEMTFSSILLASSHNGMADRGWSYFASMVPDYCVRP 528

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-DSASLSALVSGLIQNGELDEAARVLV 146
            R+   +  M+  F + G +A A+E  +RMP   D     +L+     + +++  A V  
Sbjct: 529 VRD--HFYCMVDAFGRAGRLAEAMELAERMPFEADVVVWRSLLGACRTSRDVETGAFVAH 586

Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
           K     D G+ +  AY  L   Y   G  +E  K+   +  NCD     V
Sbjct: 587 KL-FEADPGDSV--AYTILAGMYATAGMKDEEAKVMKLMEQNCDNKNHQV 633


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 207/688 (30%), Positives = 344/688 (50%), Gaps = 130/688 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG-----SGFLEEAR------ 49
           M++GY K   ++ A +LF  MP RDV SWN ++SGY  SR        FL   R      
Sbjct: 77  MLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWP 136

Query: 50  ---YLFDIMPERDCVTWNT-----------------------VISGYAKTGEMEEALRLF 83
               L   M     + W++                       ++  + + G ++ A RLF
Sbjct: 137 NAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLF 196

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
             +    +   N+M++G+++   V +A+E FD MP RD  S + +VS L Q+G + EA  
Sbjct: 197 VRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALD 256

Query: 144 VLVKC---GSRCDG------------------GEDL----------VRAY--NTLIVGYG 170
           ++V     G R D                   G+ L          +  Y  + L+  Y 
Sbjct: 257 MVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYA 316

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-- 228
           + G  +EA+ +F+ +              RN V+W  +I  + + G    + E+F QM  
Sbjct: 317 KSGCFKEAKGVFNSL------------HDRNNVAWTVLISGFLQYGCFTESVELFNQMRA 364

Query: 229 --LERDTFSWNTMISG-----------------------------------YIHVLDMEE 251
             +  D F+  T+ISG                                   Y    +++ 
Sbjct: 365 ELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQS 424

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           A  +F  M   D ++W +M++ Y+Q+GN+  A +FF  M +KN+++WN+M+     +   
Sbjct: 425 AEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAE 484

Query: 312 EGAIKLF-IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV----IPDVPI 366
           E  ++++ + +  E  +PD  T+ ++     G  DL       Q++ +TV    I D  +
Sbjct: 485 EDGLRMYKVMLSEEYVRPDWVTYVTLF---KGCADLGANKLGDQIIGRTVKVGLIIDTSV 541

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            NA+ITMY++CG I+EAR +F+ +  +K++VSWNAMI G + HG   +A+E+F  +    
Sbjct: 542 ANAVITMYSKCGRILEARKVFDFLN-VKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRG 600

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
             P YI++++VLS C+H+GLV+EG+ +F  M   + I P +EHF+ +VD++GR G L +A
Sbjct: 601 AKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEA 660

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
            DLI  MP +P   VWGALL AC++H N ELA++AA+ + +++  +S  Y+L+  +YAD 
Sbjct: 661 KDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADA 720

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           G+ DD+ ++R LM+   IKK  GYSW++
Sbjct: 721 GKSDDSAQIRKLMRDKGIKKNPGYSWME 748



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 114/498 (22%), Positives = 216/498 (43%), Gaps = 69/498 (13%)

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           + L+   +  G L +A R+L+      D     V  +N ++ GY + GR+ +A +LF ++
Sbjct: 43  NTLLHAYLSCGALSDARRLLLM-----DIAHPNVITHNVMLNGYAKLGRLSDAVELFGRM 97

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW--------- 236
           P             R++ SWN+++  Y ++   + + E F  M  R   SW         
Sbjct: 98  PA------------RDVASWNTLMSGYFQSRQYLVSLETFLSM-HRSGDSWPNAFTLACA 144

Query: 237 --------------------------------NTMISGYIHVLDMEEASNLFVKMPHPDT 264
                                             ++  ++    ++ AS LFV++  P  
Sbjct: 145 MKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTM 204

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
              N+M++GY +   ++ AL+ F  MP++++VSWN M++    +     A+ + + MQ +
Sbjct: 205 FCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSK 264

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP--DVPINNALITMYARCGAIVE 382
           G + D  T++S L+  + +  L  G Q+H  V +  +P  D  + +AL+ +YA+ G   E
Sbjct: 265 GVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN-LPHIDPYVASALVELYAKSGCFKE 323

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           A+ +F  +   +N V+W  +I G   +G  TE++ELF  MR+  +        +++S C 
Sbjct: 324 AKGVFNSLH-DRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCC 382

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
               +  GRQ   S+  + G    +    SL+ +  +   L+ A  + + M  E D   W
Sbjct: 383 SRMDLCLGRQ-LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMN-EKDIVSW 440

Query: 503 GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
            +++ A     NV  A+   E    +  +N   +  +   Y   G  +D   +  +M S 
Sbjct: 441 TSMITAYSQVGNVAKAR---EFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSE 497

Query: 563 NIKKPTGYSWVD-FSPCG 579
              +P   ++V  F  C 
Sbjct: 498 EYVRPDWVTYVTLFKGCA 515



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 152/313 (48%), Gaps = 39/313 (12%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFV-KMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
           L    F  NT++  Y+    + +A  L +  + HP+ +T N M++GYA++G L  A++ F
Sbjct: 35  LASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELF 94

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK-PDRHTFSSILSMSSGIVDL 346
            RMP +++ SWN++++G   ++ Y  +++ F+ M   G+  P+  T +  +  S G +  
Sbjct: 95  GRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK-SCGALGW 153

Query: 347 H-LGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMK---------LL-- 393
           H L +Q+  MV K     D  +  AL+ M+ RCGA+  A  +F  +K         +L  
Sbjct: 154 HSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAG 213

Query: 394 -------------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
                              ++VVSWN M+   +  G   EAL++   M+S  V     T+
Sbjct: 214 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 273

Query: 435 ISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
            S L+ACA    +  G+Q H + + N   I+P +   ++LV++  + G  ++A  +   +
Sbjct: 274 TSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA--SALVELYAKSGCFKEAKGVFNSL 331

Query: 494 PFEPDKAVWGALL 506
             + +   W  L+
Sbjct: 332 -HDRNNVAWTVLI 343


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 193/609 (31%), Positives = 329/609 (54%), Gaps = 60/609 (9%)

Query: 14  ARKLFDEMPQRDVVSWNVMI---------------------SG------------YISSR 40
           A KLFDEMP+RD ++WN ++                     SG             + S 
Sbjct: 42  ANKLFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSN 101

Query: 41  GSGFLEEAR---YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM 97
             GF E  +   Y+  +  E +    N++I  Y++ G++E + ++FNSM  RN+ SWN++
Sbjct: 102 KEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSI 161

Query: 98  ISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCD 153
           +S + + G V +AI   D M       D  + ++L+SG    G   +A  VL +   +  
Sbjct: 162 LSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRM--QIA 219

Query: 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
           G +    + ++L+    + G ++  + +   I  N        +   ++    ++I  Y 
Sbjct: 220 GLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRN--------QLWYDVYVETTLIDMYI 271

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNA 269
           K G +  AR +F+ M  ++  +WN+++SG  +   +++A  L ++M      PD +TWN+
Sbjct: 272 KTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNS 331

Query: 270 MVSGYAQIGNLELALDFFKRMPQK----NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           + SGYA +G  E ALD   +M +K    N+VSW ++ +GC  N ++  A+K+FI+MQ EG
Sbjct: 332 LASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEG 391

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEAR 384
             P+  T S++L +   +  LH G ++H   + K +I D  +  AL+ MY + G +  A 
Sbjct: 392 VGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAI 451

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            IF  +K  K++ SWN M+ G A  G   E +  F  M    + P  ITF SVLS C ++
Sbjct: 452 EIFWGIKN-KSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNS 510

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           GLV+EG ++F  M + YGI P IEH + +VD++GR G L++A D I+ M  +PD  +WGA
Sbjct: 511 GLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGA 570

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
            L +C++H ++ELA++A + L  +EP NS  Y+++ N+Y+++ RW+D   +R LM++N +
Sbjct: 571 FLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRV 630

Query: 565 KKPTGYSWV 573
           +    +SW+
Sbjct: 631 RVQDLWSWI 639



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 203/487 (41%), Gaps = 100/487 (20%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           Y +   +  A +LF+ MP R+ ++WN ++   L++G+   A+E F  M    + +  + +
Sbjct: 33  YGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTM 92

Query: 130 SGLIQ---NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
             L+Q   N E     R +     R  G E  V   N+LIV Y + G++E +RK+F+ + 
Sbjct: 93  VKLLQVCSNKEGFAEGRQIHGYVLRL-GLESNVSMCNSLIVMYSRNGKLELSRKVFNSMK 151

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG 242
                        RN+ SWNS++  Y K G V  A  + ++M    L+ D  +WN+++SG
Sbjct: 152 ------------DRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSG 199

Query: 243 Y---------IHVL----------DMEEASNLFVKMPHPDTLTWNAMVSG---------- 273
           Y         I VL               S+L   +  P  L     + G          
Sbjct: 200 YASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYD 259

Query: 274 ----------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
                     Y + G L  A   F  M  KN+V+WNS+++G       + A  L I+M+ 
Sbjct: 260 VYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEK 319

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEA 383
           EG KPD  T+                                  N+L + YA  G   +A
Sbjct: 320 EGIKPDAITW----------------------------------NSLASGYATLGKPEKA 345

Query: 384 RIIFEEMK---LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
             +  +MK   +  NVVSW A+  GC+ +G    AL++F  M+   V P   T  ++L  
Sbjct: 346 LDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKI 405

Query: 441 CAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
                L+  G++ H   +      +  +    +LVD+ G+ G L+ A+++  G+      
Sbjct: 406 LGCLSLLHSGKEVHGFCLRKNLICDAYVA--TALVDMYGKSGDLQSAIEIFWGIK-NKSL 462

Query: 500 AVWGALL 506
           A W  +L
Sbjct: 463 ASWNCML 469



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 165/350 (47%), Gaps = 49/350 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I  Y+K   +  AR +FD M  +++V+WN ++SG      +  L++A  L   M +   
Sbjct: 266 LIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGL---SYACLLKDAEALMIRMEKEGI 322

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMP----ARNVVSWNAMISGFLQNGDVANAIE 112
             D +TWN++ SGYA  G+ E+AL +   M     A NVVSW A+ SG  +NG+  NA++
Sbjct: 323 KPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALK 382

Query: 113 FFDRMP----GRDSASLSALVS-----GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN 163
            F +M     G ++A++S L+       L+ +G+  E     ++    CD          
Sbjct: 383 VFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGK--EVHGFCLRKNLICDA-----YVAT 435

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG----DVV 219
            L+  YG+ G ++ A ++F  I              +++ SWN M+M YA  G     + 
Sbjct: 436 ALVDMYGKSGDLQSAIEIFWGIK------------NKSLASWNCMLMGYAMFGRGEEGIA 483

Query: 220 SAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGY 274
           +   + E  +E D  ++ +++S   +   ++E    F  M       P     + MV   
Sbjct: 484 AFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLL 543

Query: 275 AQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
            + G L+ A DF + M  K +   W + ++ C+ ++D E A   + ++QV
Sbjct: 544 GRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQV 593



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 113/227 (49%), Gaps = 3/227 (1%)

Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
           + + DT   +A +  Y +  +L  A   F  MP+++ ++WN ++     + ++E A++LF
Sbjct: 18  LDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELF 77

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARC 377
            +MQ  G K    T   +L + S       G QIH  V +  +  +V + N+LI MY+R 
Sbjct: 78  REMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRN 137

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G +  +R +F  MK  +N+ SWN+++      G+  +A+ L   M    + P  +T+ S+
Sbjct: 138 GKLELSRKVFNSMK-DRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSL 196

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
           LS  A  GL ++     K M    G++P     +SL+  V   G L+
Sbjct: 197 LSGYASKGLSKDAIAVLKRM-QIAGLKPSTSSISSLLQAVAEPGHLK 242


>gi|302819822|ref|XP_002991580.1| hypothetical protein SELMODRAFT_478 [Selaginella moellendorffii]
 gi|300140613|gb|EFJ07334.1| hypothetical protein SELMODRAFT_478 [Selaginella moellendorffii]
          Length = 560

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 178/544 (32%), Positives = 294/544 (54%), Gaps = 29/544 (5%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  Y +   +  ++ +FD +P+RD VSW  ++S    +  +G L E   +FD MP+R  
Sbjct: 39  MVVAYAENDALEISKVMFDRIPERDPVSWTALLS---VNATNGHLVEVINIFDRMPKRSW 95

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
             W T++S Y+  G++E     F +MP R  VSWNA++  + Q G + +A EFFDRMP  
Sbjct: 96  RCWQTMLSAYSDHGDLENTKLTFATMPYRGSVSWNALLGAYAQTGHLESAKEFFDRMPQC 155

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D+ S + +     Q G + E+         R     DLV ++N+++  Y +R  +++AR+
Sbjct: 156 DTVSWTIVSEAYAQRGHIQESRWFFDNVPDR-----DLV-SWNSIMSAYARRALIDDARR 209

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +F+ I             + N+ SWN+MI  Y + G    AR +F +M  ++  SWNT++
Sbjct: 210 VFEGI------------LRPNVFSWNTMIAAYTQNGHFDEARRVFGEMPRKNVVSWNTLL 257

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNL---ELALDFFKRMPQKNLVS 297
           + Y     + EA  +F +MP  D ++WN++V+ YAQ G++     A + F  M +++L+S
Sbjct: 258 AAYSERGMLCEAKEMFDRMPQKDVISWNSLVTAYAQNGHILRVAAAREIFDTMRERDLIS 317

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WN+MIA    + D E  I LF  M + GE PD  T  ++L   +    L  G  IH  + 
Sbjct: 318 WNTMIAAYAQSGDGEEGIHLFRIMDLYGEAPDSITLIAVLDACTAARSLERGKTIHAAIR 377

Query: 358 KTVIPDVPIN----NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
                D+  +     AL+ MY   G +  A   F+ ++  ++V +W A+I   A +G   
Sbjct: 378 AGTRLDLTTHLLVLTALVNMYGNLGCVELAMEAFQGIQR-RDVTAWTAVIVAHARNGHGG 436

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
            ALELF+      + P  + F+S+L+AC+HAGL+  GR  F ++  +Y +   +EH+  +
Sbjct: 437 AALELFREFGLEGMQPDAVAFLSILTACSHAGLLYSGRDFFVALHGDYNVGVTLEHYRCV 496

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           +D++GR G+LE A ++I+GMPF+ D   W  LLGAC+   +    Q  AEA   ++P  +
Sbjct: 497 IDMLGRLGQLELAEEVIRGMPFKADFVSWVTLLGACKTQGDAHRGQRVAEAASSLDPGVA 556

Query: 534 TPYV 537
           +PYV
Sbjct: 557 SPYV 560



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 168/405 (41%), Gaps = 65/405 (16%)

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP 262
           VSW +MI  Y +AG  V A  +FE + ER T +  +M+  Y     +E +  +F ++P  
Sbjct: 3   VSWGAMIKAYTQAGHFVEAVRMFEIVPERSTVAMTSMVVAYAENDALEISKVMFDRIPER 62

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM- 321
           D ++W A++S  A  G+L   ++ F RMP+++   W +M++    + D E     F  M 
Sbjct: 63  DPVSWTALLSVNATNGHLVEVINIFDRMPKRSWRCWQTMLSAYSDHGDLENTKLTFATMP 122

Query: 322 ------------------QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363
                              +E  K          ++S  IV      + H   ++    +
Sbjct: 123 YRGSVSWNALLGAYAQTGHLESAKEFFDRMPQCDTVSWTIVSEAYAQRGHIQESRWFFDN 182

Query: 364 VPIN-----NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
           VP       N++++ YAR   I +AR +FE + L  NV SWN MI     +G   EA  +
Sbjct: 183 VPDRDLVSWNSIMSAYARRALIDDARRVFEGI-LRPNVFSWNTMIAAYTQNGHFDEARRV 241

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF-----------KSMVNEYGIEPRI 467
           F  M    V    +++ ++L+A +  G++ E ++ F            S+V  Y     I
Sbjct: 242 FGEMPRKNV----VSWNTLLAAYSERGMLCEAKEMFDRMPQKDVISWNSLVTAYAQNGHI 297

Query: 468 EHFASLVDIV------------------GRHGRLEDAMDLIKGMPF---EPDKAVWGALL 506
              A+  +I                    + G  E+ + L + M      PD     A+L
Sbjct: 298 LRVAAAREIFDTMRERDLISWNTMIAAYAQSGDGEEGIHLFRIMDLYGEAPDSITLIAVL 357

Query: 507 GACRVHNNVELAQVAAEALMKVEPENSTPYVL----LYNMYADVG 547
            AC    ++E  +    A+      + T ++L    L NMY ++G
Sbjct: 358 DACTAARSLERGKTIHAAIRAGTRLDLTTHLLVLTALVNMYGNLG 402



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 124/282 (43%), Gaps = 28/282 (9%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           D  SW  MI  Y       EA  +F  +P   T+   +MV  YA+   LE++   F R+P
Sbjct: 1   DDVSWGAMIKAYTQAGHFVEAVRMFEIVPERSTVAMTSMVVAYAENDALEISKVMFDRIP 60

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           +++ VSW ++++   TN      I +F +M     K     + ++LS  S   DL     
Sbjct: 61  ERDPVSWTALLSVNATNGHLVEVINIFDRM----PKRSWRCWQTMLSAYSDHGDLE---- 112

Query: 352 IHQMVTKTVIPDVPIN-----NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
                TK     +P       NAL+  YA+ G +  A+  F+ M    + VSW  +    
Sbjct: 113 ----NTKLTFATMPYRGSVSWNALLGAYAQTGHLESAKEFFDRMPQC-DTVSWTIVSEAY 167

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
           A  G   E+   F ++    +    +++ S++SA A   L+++ R+ F+ +     + P 
Sbjct: 168 AQRGHIQESRWFFDNVPDRDL----VSWNSIMSAYARRALIDDARRVFEGI-----LRPN 218

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           +  + +++    ++G  ++A  +   MP   +   W  LL A
Sbjct: 219 VFSWNTMIAAYTQNGHFDEARRVFGEMP-RKNVVSWNTLLAA 259


>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 632

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 190/535 (35%), Positives = 301/535 (56%), Gaps = 38/535 (7%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF-- 114
           +RD    N ++  YAK G +E A +LF+ MP R V  WN MISG+ + G+   A   F  
Sbjct: 116 DRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHV 175

Query: 115 --DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
             D+   R+  + + +++G  + G L  A     K   R       V ++N ++ GY Q 
Sbjct: 176 MGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERS------VVSWNAMLSGYAQG 229

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           G  EE  +LF+ +        GNV  + +  +W ++I   +  GD   +  I  ++ ++ 
Sbjct: 230 GAPEETIRLFNDM-----LSPGNV--QPDETTWATVISSCSSLGDPCLSESIVRKLDDKV 282

Query: 233 TFSWNTMISGYIHVLDM-------EEASNLFVKM---PHPDTLTWNAMVSGYAQIGNLEL 282
            F  N  +   +  LDM       E A  +F ++    +  ++ WNAM+S YA++G+L  
Sbjct: 283 GFRPNYFVKTAL--LDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPS 340

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM--QVEGEKPDRHTFSSILSMS 340
           A   F +MPQ++ VSWNSMIAG   N +   AIKLF +M    +  KPD  T  S+ S  
Sbjct: 341 AKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSAC 400

Query: 341 SGIVDLHLG-MQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
             + +L LG   +  +    +   + + N+LI MY+RCG++ +A +IF+EM   +++VS+
Sbjct: 401 GHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMAT-RDLVSY 459

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N +I G A HG   E++EL   M+   + P  IT+I++L+AC+HAGL++EG++ F+S+  
Sbjct: 460 NTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKF 519

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
                P ++H+A ++D++GR GRLE+AM LI+ MP EP   ++G+LL A  +H  VEL +
Sbjct: 520 -----PDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGE 574

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +AA  L KVEP NS  Y LL N+YA  GRW + ++VR  M+   +KK TG SW++
Sbjct: 575 LAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGLSWLE 629



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 150/499 (30%), Positives = 247/499 (49%), Gaps = 73/499 (14%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE----RDC 60
           Y K   +  ARKLFDEMP R V  WNVMISGY      G  EEA  LF +M +    R+ 
Sbjct: 129 YAKYGPIEFARKLFDEMPDRTVADWNVMISGYWK---CGNEEEASTLFHVMGDQEISRNV 185

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--P 118
           +TW T+I+G+AK G ++ A   F+ MP R+VVSWNAM+SG+ Q G     I  F+ M  P
Sbjct: 186 ITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSP 245

Query: 119 GR---DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
           G    D  + + ++S     G+   +  ++ K   +  G          L+  + + G +
Sbjct: 246 GNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKV-GFRPNYFVKTALLDMHAKCGNL 304

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
           E A K+F+++          V   R+ V WN+MI  YA+ GD+ SA+ +F++M +RDT S
Sbjct: 305 EAAHKIFEQL---------GVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVS 355

Query: 236 WNTMISGYIHVLDMEEASNLFVKM------PHPDTLT----------------------- 266
           WN+MI+GY    +  +A  LF +M        PD +T                       
Sbjct: 356 WNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSI 415

Query: 267 ------------WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
                       +N++++ Y++ G+++ A+  F+ M  ++LVS+N++I+G   +     +
Sbjct: 416 LKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMES 475

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMY 374
           I+L  +M+ +G +PDR T+ +IL+  S    L  G ++ + +     PDV     +I M 
Sbjct: 476 IELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIK---FPDVDHYACMIDML 532

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL--FKSMRSFKVLPTYI 432
            R G + EA  + + M +  +   + +++   + H    + +EL    + + FKV P   
Sbjct: 533 GRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIH----KQVELGELAAAKLFKVEPHNS 588

Query: 433 TFISVLSAC-AHAGLVEEG 450
              ++LS   A AG  +EG
Sbjct: 589 GNYALLSNIYASAGRWKEG 607



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 119/502 (23%), Positives = 208/502 (41%), Gaps = 120/502 (23%)

Query: 159 VRAYNTLIVGYGQRGRVEEA-RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
           VR +  ++  Y Q G   +    LF  +  +CD        K N  S+ S++M  A +  
Sbjct: 52  VRVFTFMLKYYSQIGVHSQVFVSLFKHMLQHCD-------IKPN-ASFYSVMMKSAGSES 103

Query: 218 VVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY--- 274
           ++    + +   +RD +  N ++  Y     +E A  LF +MP      WN M+SGY   
Sbjct: 104 MLFLAHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKC 163

Query: 275 --------------------------------AQIGNLELALDFFKRMPQKNLVSWNSMI 302
                                           A+ GNL+ A  +F +MP++++VSWN+M+
Sbjct: 164 GNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAML 223

Query: 303 AGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV- 360
           +G       E  I+LF  M   G  +PD  T+++++S  S + D  L   I + +   V 
Sbjct: 224 SGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVG 283

Query: 361 -IPDVPINNALITMYARCGAIVEARIIFEEMKLLK------------------------- 394
             P+  +  AL+ M+A+CG +  A  IFE++ + K                         
Sbjct: 284 FRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKH 343

Query: 395 --------NVVSWNAMIGGCASHGFATEALELFKSMRSFK--VLPTYITFISVLSACAHA 444
                   + VSWN+MI G   +G + +A++LF+ M S +    P  +T +SV SAC H 
Sbjct: 344 LFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHL 403

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP---------- 494
           G +  G     S++    I+  I  + SL+++  R G ++DA+ + + M           
Sbjct: 404 GELGLGNWAV-SILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTL 462

Query: 495 ------------------------FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
                                    EPD+  + A+L AC     ++  Q   E++   + 
Sbjct: 463 ISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKFPDV 522

Query: 531 ENSTPYVLLYNMYADVGRWDDA 552
           ++   Y  + +M    GR ++A
Sbjct: 523 DH---YACMIDMLGRAGRLEEA 541



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 128/310 (41%), Gaps = 15/310 (4%)

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIG-NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           ++F    HPD   +  M+  Y+QIG + ++ +  FK M Q   +  N+            
Sbjct: 42  HIFHAATHPDVRVFTFMLKYYSQIGVHSQVFVSLFKHMLQHCDIKPNASFYSVMMKSAGS 101

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALIT 372
            ++     +   G   D +  + IL + +    +    ++   +    + D    N +I+
Sbjct: 102 ESMLFLAHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADW---NVMIS 158

Query: 373 MYARCGAIVEARIIFEEM---KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
            Y +CG   EA  +F  M   ++ +NV++W  MI G A  G    A   F  M    V  
Sbjct: 159 GYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSV-- 216

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
             +++ ++LS  A  G  EE  + F  M++   ++P    +A+++      G    +  +
Sbjct: 217 --VSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESI 274

Query: 490 IKGMP----FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           ++ +     F P+  V  ALL       N+E A    E L   +  +S P+  + + YA 
Sbjct: 275 VRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYAR 334

Query: 546 VGRWDDANEV 555
           VG    A  +
Sbjct: 335 VGDLPSAKHL 344


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 208/619 (33%), Positives = 328/619 (52%), Gaps = 63/619 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MIS  V+R  + +ARKLFDEMPQ + +SW  +ISG++     G + E+ + F+  P ++ 
Sbjct: 93  MISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMK---YGRVRESMWYFERNPFQNV 149

Query: 61  VTWNTVISGYAKTGEMEEALRLF----------NSMPARNVVSW---------------- 94
           V+W   ISGY + G   EA++LF          N +   +VV                  
Sbjct: 150 VSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGL 209

Query: 95  -------------NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                        N++I+  L+ G++  A E FDRM  +D  S +A++   ++  EL EA
Sbjct: 210 IVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEA 269

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            R+  +   R +       +++ +I  Y Q G  EE+ +LF ++       EG   FK N
Sbjct: 270 RRIFDEMPQRNE------VSWSAMIARYCQSGYPEESLRLFCRMI-----QEG---FKPN 315

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFV 257
           I  ++S++   A    + +   I   +     E+D F  +++I  Y    + ++   LF 
Sbjct: 316 ISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFD 375

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
            +   + ++WNAMV GY+  G++E A   F  MP +N VSW+++IAG    + ++   ++
Sbjct: 376 TILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEV 435

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYAR 376
           F +M + GE P++ TFSS+L   +    L  G  +H  + K  I  D  +  AL  MYA+
Sbjct: 436 FNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAK 495

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-RSFKVLPTYITFI 435
            G I  ++ +F  M   KN VSW AMI G A  G A E+L LF+ M ++  + P  + F+
Sbjct: 496 SGDIESSKKVFNRMP-KKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFL 554

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           +VL AC+H+GLV++G  +F SM   YG++P+  HF  +VD++ R GRL +A + I  MPF
Sbjct: 555 AVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPF 614

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           +P+   W ALL  C+ + N ELA+  A  L ++  +N   YVLL N+YA  GRW D  +V
Sbjct: 615 QPETNAWAALLSGCKTYKNEELAERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKV 674

Query: 556 RLLMKSNNIKKPTGYSWVD 574
           R LMK+  +KK  G SWV+
Sbjct: 675 RKLMKAKGLKKSGGCSWVE 693



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/515 (27%), Positives = 235/515 (45%), Gaps = 103/515 (20%)

Query: 36  YISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWN 95
           Y++ R S   ++    FD     D V  N +IS   + G ++EA +LF+ MP  N +SW 
Sbjct: 66  YLNYRKSAEADQISKDFDGF---DLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWT 122

Query: 96  AMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGG 155
           A+ISGF++ G V  ++ +F+R P ++  S +A +SG +QNG   EA ++ +K        
Sbjct: 123 ALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKL------- 175

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC----DRGEG--------NVRFKRNIV 203
                              V+  +  F  +   C    D G G           ++ ++ 
Sbjct: 176 ---------------LESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLA 220

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPD 263
             NS+I    + G++  ARE+F++M E+D  SW  ++  Y+ + ++ EA  +F +MP  +
Sbjct: 221 VSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRN 280

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
            ++W+AM++ Y Q G  E +L  F RM Q                               
Sbjct: 281 EVSWSAMIARYCQSGYPEESLRLFCRMIQ------------------------------- 309

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVE 382
           EG KP+   FSSILS  + +  L  GM IH  VTK     DV ++++LI MY +CG   +
Sbjct: 310 EGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKD 369

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA--------------------------- 415
            R +F+ + L KN+VSWNAM+GG + +G   EA                           
Sbjct: 370 GRFLFDTI-LEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQ 428

Query: 416 ----LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
                E+F  M     +P   TF S+L ACA    +++G+     +V + GI+       
Sbjct: 429 FDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIV-KLGIQCDTYVGT 487

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +L D+  + G +E +  +   MP + ++  W A++
Sbjct: 488 ALTDMYAKSGDIESSKKVFNRMP-KKNEVSWTAMI 521



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 181/381 (47%), Gaps = 43/381 (11%)

Query: 208 MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW 267
           M + Y K+ +     + F+     D    N MIS  +   +++EA  LF +MP  + ++W
Sbjct: 65  MYLNYRKSAEADQISKDFDGF---DLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISW 121

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
            A++SG+ + G +  ++ +F+R P +N+VSW + I+G   N     A+KLFI++     K
Sbjct: 122 TALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVK 181

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIV----- 381
           P++ TF+S++   + + D  LGM +  ++ KT    D+ ++N+LIT+  R G I      
Sbjct: 182 PNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREV 241

Query: 382 --------------------------EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
                                     EAR IF+EM   +N VSW+AMI      G+  E+
Sbjct: 242 FDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMP-QRNEVSWSAMIARYCQSGYPEES 300

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L LF  M      P    F S+LSA A    ++ G  +    V + G E  +   +SL+D
Sbjct: 301 LRLFCRMIQEGFKPNISCFSSILSALASVEALQAG-MNIHGHVTKIGFEKDVFVSSSLID 359

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP-ENST 534
           +  + G  +D   L   +  E +   W A++G   ++ ++E     A+ L  + P  N+ 
Sbjct: 360 MYCKCGETKDGRFLFDTI-LEKNMVSWNAMVGGYSLNGHME----EAKYLFNIMPVRNNV 414

Query: 535 PYVLLYNMYADVGRWDDANEV 555
            +  +   + D  ++D+  EV
Sbjct: 415 SWSAIIAGHLDCEQFDEMFEV 435


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 190/624 (30%), Positives = 332/624 (53%), Gaps = 68/624 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSR------- 40
           +I  Y +  ++ KARK+F+EMP RDVVSWN +ISG             Y   R       
Sbjct: 156 LIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPD 215

Query: 41  ------------GSGFLEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEALRLFN 84
                       G G +EE   +  ++ +    +D +  N ++S Y K   + +  R+F+
Sbjct: 216 SYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFD 275

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---DSASLSALVSGLIQNGELDEA 141
            M  R+ VSWN MI G+ Q G    +I+ F  M  +   D  ++++++      G+L+  
Sbjct: 276 KMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFG 335

Query: 142 ARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
             V   ++  G  CD       A N LI  Y + G +  ++++F  +             
Sbjct: 336 KYVHDYMITSGYECD-----TTASNILINMYAKCGNLLASQEVFSGMKC----------- 379

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQM---LERDTFSWNTMISGYIHVLDMEEASNL 255
            ++ VSWNSMI  Y + G    A ++F+ M   ++ D+ ++  ++S    + D+     L
Sbjct: 380 -KDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKEL 438

Query: 256 FVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
              +     + + +  N +V  YA+ G +  +L  F+ M  +++++WN++IA C  ++D 
Sbjct: 439 HCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDC 498

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNAL 370
              +++  +M+ EG  PD  T  SIL + S +     G +IH  + K  +  DVP+ N L
Sbjct: 499 NLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVL 558

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           I MY++CG++  +  +F+ MK  K+VV+W A+I  C  +G   +A+  F  M +  ++P 
Sbjct: 559 IEMYSKCGSLRNSFQVFKLMKT-KDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPD 617

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
           ++ F++++ AC+H+GLVEEG  +F  M  +Y IEPRIEH+A +VD++ R   L+ A D I
Sbjct: 618 HVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFI 677

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
             MP +PD ++WGALL ACR+  + E+A+  +E ++++ P+++  YVL+ N+YA +G+WD
Sbjct: 678 LSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWD 737

Query: 551 DANEVRLLMKSNNIKKPTGYSWVD 574
               +R  +K+  +KK  G SW++
Sbjct: 738 QVRSIRKSIKARGLKKDPGCSWME 761



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 145/561 (25%), Positives = 247/561 (44%), Gaps = 101/561 (18%)

Query: 56  PERDCVTWNTVISGYAKTGEMEEALRLFN------------SMPA--------------- 88
           P  +   WN++I      G   EAL L++            + P+               
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 89  ------------RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG 136
                        ++   NA+I  + +  D+  A + F+ MP RD  S ++L+SG   NG
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA---RKLFDKIPVNCDRGE 193
             +EA  +  +   R  G        ++++   G  G VEE      L +KI +      
Sbjct: 196 YWNEALEIYYR--FRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGI------ 247

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEAS 253
                K++++  N ++  Y K   ++  R IF++M+ RD  SWNTMI GY  V   EE+ 
Sbjct: 248 -----KKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESI 302

Query: 254 NLFVKMPH---PDTLTW-----------------------------------NAMVSGYA 275
            LF++M +   PD LT                                    N +++ YA
Sbjct: 303 KLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYA 362

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           + GNL  + + F  M  K+ VSWNSMI     N  ++ A+KLF  M+ +  KPD  T+  
Sbjct: 363 KCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVM 421

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +LSMS+ + DLHLG ++H  + K     ++ ++N L+ MYA+CG + ++  +FE MK  +
Sbjct: 422 LLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMK-AR 480

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           ++++WN +I  C         L +   MR+  V P   T +S+L  C+      +G++  
Sbjct: 481 DIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE-I 539

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
              + + G+E  +     L+++  + G L ++  + K M    D   W AL+ AC ++  
Sbjct: 540 HGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK-TKDVVTWTALISACGMYGE 598

Query: 515 VELAQVAAEALMKVEPENSTP 535
               + A  A  ++E     P
Sbjct: 599 ---GKKAVRAFGEMEAAGIVP 616



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 133/485 (27%), Positives = 232/485 (47%), Gaps = 38/485 (7%)

Query: 66  VISGYAKTGEMEEALRLFN-SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GR 120
           +I+ YA   +   +  +F  + P+ NV  WN++I     NG  + A+  +          
Sbjct: 54  LIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQP 113

Query: 121 DSASLSALVSGLIQNGELD-EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           D+ +  ++++     G LD E A+ +         G DL    N LI  Y +   +++AR
Sbjct: 114 DTYTFPSVINACA--GLLDFEMAKSIHDRVLDMGFGSDLYIG-NALIDMYCRFNDLDKAR 170

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFS 235
           K+F+++P+            R++VSWNS+I  Y   G    A EI+ +     +  D+++
Sbjct: 171 KVFEEMPL------------RDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYT 218

Query: 236 WNTMISGYIHVLDMEEAS---NLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
            ++++     +  +EE      L  K+    D +  N ++S Y +   L      F +M 
Sbjct: 219 MSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMV 278

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
            ++ VSWN+MI G      YE +IKLF++M V   KPD  T +SIL     + DL  G  
Sbjct: 279 LRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKY 337

Query: 352 IHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +H  M+T     D   +N LI MYA+CG ++ ++ +F  MK  K+ VSWN+MI     +G
Sbjct: 338 VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMK-CKDSVSWNSMINVYIQNG 396

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
              EA++LFK M++  V P  +T++ +LS     G +  G++     + + G    I   
Sbjct: 397 SFDEAMKLFKMMKT-DVKPDSVTYVMLLSMSTQLGDLHLGKE-LHCDLAKMGFNSNIVVS 454

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
            +LVD+  + G + D++ + + M    D   W  ++ +C VH+  E   +    + ++  
Sbjct: 455 NTLVDMYAKCGEMGDSLKVFENMK-ARDIITWNTIIASC-VHS--EDCNLGLRMISRMRT 510

Query: 531 ENSTP 535
           E  TP
Sbjct: 511 EGVTP 515



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 183/358 (51%), Gaps = 17/358 (4%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLF 256
           N+  WNS+I      G    A  ++ +     L+ DT+++ ++I+    +LD E A ++ 
Sbjct: 79  NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138

Query: 257 VKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
            ++       D    NA++  Y +  +L+ A   F+ MP +++VSWNS+I+G   N  + 
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 198

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALI 371
            A++++ + +  G  PD +T SS+L    G+  +  G  IH ++ K  I  DV +NN L+
Sbjct: 199 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLL 258

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-RSFKVLPT 430
           +MY +   +++ R IF++M +L++ VSWN MI G +  G   E+++LF  M   FK  P 
Sbjct: 259 SMYCKFNGLIDGRRIFDKM-VLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFK--PD 315

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            +T  S+L AC H G +E G+     M+   G E        L+++  + G L  + ++ 
Sbjct: 316 LLTITSILQACGHLGDLEFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVF 374

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE-NSTPYVLLYNMYADVG 547
            GM  + D   W +++    + N      +    +MK + + +S  YV+L +M   +G
Sbjct: 375 SGMKCK-DSVSWNSMINV-YIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLG 430


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 201/627 (32%), Positives = 334/627 (53%), Gaps = 70/627 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY-------------ISSRGSGF--- 44
           ++S Y K  +M  A K+F+ + +R+ V WN MI GY             +  + SG+   
Sbjct: 368 LVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNID 427

Query: 45  ----------------LEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEALRLFN 84
                           LE       I+ ++    +    N ++  YAK G +E+A ++F 
Sbjct: 428 DFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFE 487

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDE 140
            M  R+ VSWN +I G++Q+ + + A + F RM       D A L++ +        L +
Sbjct: 488 HMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQ 547

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +V   C S   G + ++   ++LI  Y + G +E+ARK+F  +P            + 
Sbjct: 548 GKQV--HCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMP------------EW 593

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           ++VS N++I  Y++  ++  A  +F++ML +         +  +      E+  L  +  
Sbjct: 594 SVVSMNALIAGYSQ-NNLEEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQF- 651

Query: 261 HPDTLTWNAMVSG-YAQIGNLELALDFFKRMPQ-----------KNLVSWNSMIAGCETN 308
           H   + W     G Y  I  L L ++  +RM +           K++V W  M++G   N
Sbjct: 652 HGQIIKWGFSSEGEYLGISLLGLYMNS-RRMAEACALFSELSSPKSIVLWTGMMSGHSQN 710

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPIN 367
             YE A+K + +M+ +G  PD+ TF ++L + S +  L  G  IH ++       D   +
Sbjct: 711 GFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTS 770

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           N LI MYA+CG +  +  +F+EM+   NVVSWN++I G A +G+A +AL++F SMR   +
Sbjct: 771 NTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHI 830

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
           +P  ITF+ VL+AC+HAG V +GR+ F+ M+ +YGIE R++H A +VD++GR G L++A 
Sbjct: 831 MPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEAD 890

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
           D I+    +PD  +W +LLGACR+H +    ++AAE L+++EP+NS+ YVLL N+YA  G
Sbjct: 891 DFIEAQNLKPDARLWSSLLGACRIHGDDMRGEIAAERLIELEPQNSSAYVLLSNIYASQG 950

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVD 574
           RW++AN +R  M+   +KK  GYSW+D
Sbjct: 951 RWEEANALRKAMRDRGVKKVPGYSWID 977



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 180/712 (25%), Positives = 300/712 (42%), Gaps = 147/712 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           ++  Y K   +  A+++FD +   + V W  + SGY+    +G  EEA  +F+ M     
Sbjct: 201 LVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVK---AGLPEEAVIVFERMRGEGH 257

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
             D + + TVI+ Y   G++++A  LF  MP+ +VV+WN MISG  + G    AIE+F  
Sbjct: 258 RPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLN 317

Query: 117 MPGRD----SASLSALVS--GLIQNGELD-----EAARV-----------LVKCGSRCDG 154
           M         ++L +++S  G++ N +L      EA ++           LV   S+C+ 
Sbjct: 318 MRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEK 377

Query: 155 GEDLVRAY-----------NTLIVGYGQRGRVEEARKLF-------------------DK 184
            E   + +           N +I GY   G   +  +LF                     
Sbjct: 378 MEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLST 437

Query: 185 IPVNCDRGEGNV--------RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
             V+ D   G+         +  +N+   N+++  YAK G +  AR+IFE M +RD  SW
Sbjct: 438 CAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSW 497

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH----------PDTL--------------------- 265
           NT+I GY+   +  EA +LF++M              TL                     
Sbjct: 498 NTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVK 557

Query: 266 --------TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                   T ++++  Y++ G +E A   F  MP+ ++VS N++IAG   N + E A+ L
Sbjct: 558 CGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQN-NLEEAVVL 616

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP--INNALITMYA 375
           F +M  +G  P   TF++I+        L LG Q H  + K         +  +L+ +Y 
Sbjct: 617 FQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYM 676

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
               + EA  +F E+   K++V W  M+ G + +GF  EAL+ +K MR    LP   TF+
Sbjct: 677 NSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFV 736

Query: 436 SVLSACAHAGLVEEGRQ------HFKSMVNEYGIEPRIEHFA------------------ 471
           +VL  C+    + EGR       H    ++E      I+ +A                  
Sbjct: 737 TVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRR 796

Query: 472 -------SLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNVELAQVA 521
                  SL++   ++G  EDA+ +   M      PD+  +  +L AC     V   +  
Sbjct: 797 SNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKI 856

Query: 522 AEALM-KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
            E ++ +   E    +V    M   +GRW    E    +++ N+ KP    W
Sbjct: 857 FEMMIGQYGIEARVDHVAC--MVDLLGRWGYLQEADDFIEAQNL-KPDARLW 905



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 157/557 (28%), Positives = 265/557 (47%), Gaps = 57/557 (10%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-FLEEARYLFD--IMPERDCV 61
           Y K  +++ A K F+ + ++DV +WN M+S Y S    G  L     LF+  I P +   
Sbjct: 105 YAKCAQVSYAEKQFNSL-EKDVTAWNSMLSMYSSIGQPGKVLRSFVSLFENLIFPNK--F 161

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPA----RNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           T++ V+S  A+   +E   ++  SM      RN     A++  + +   + +A   FD +
Sbjct: 162 TFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGI 221

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
              ++   + L SG ++ G  +EA  V  +   R +G      A+ T+I  Y   G++++
Sbjct: 222 VDPNTVCWTCLFSGYVKAGLPEEAVIVFERM--RGEGHRPDHLAFVTVINTYISLGKLKD 279

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           AR LF ++P              ++V+WN MI  + K G  + A E F  M +    S  
Sbjct: 280 ARLLFGEMP------------SPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTR 327

Query: 238 TMIS------GYIHVLDMEE-----------ASNLFVKMPHPDTLTWNAMVSGYAQIGNL 280
           + +       G +  LD+             ASN++V          +++VS Y++   +
Sbjct: 328 STLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVG---------SSLVSMYSKCEKM 378

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           E A   F+ + ++N V WN+MI G   N +    ++LF+ M+  G   D  TF+S+LS  
Sbjct: 379 EAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTC 438

Query: 341 SGIVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           +   DL +G Q H  ++ K +  ++ + NAL+ MYA+CGA+ +AR IFE M    N VSW
Sbjct: 439 AVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDN-VSW 497

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N +IGG       +EA +LF  M S  ++       S L AC +   + +G+Q    +  
Sbjct: 498 NTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQ-VHCLSV 556

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
           + G++  +   +SL+D+  + G +EDA  +   MP E       AL+ A    NN+E A 
Sbjct: 557 KCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMP-EWSVVSMNALI-AGYSQNNLEEAV 614

Query: 520 VAAEALMK--VEPENST 534
           V  + ++   V P   T
Sbjct: 615 VLFQEMLTKGVNPSEIT 631



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 137/515 (26%), Positives = 232/515 (45%), Gaps = 84/515 (16%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++ K+RK+FDEMP R  ++  +  + +  S   G   E R              N ++  
Sbjct: 57  KLFKSRKVFDEMPHRLALALRIGKAVHSKSLILGIDSEGRL------------GNAIVDL 104

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSA 123
           YAK  ++  A + FNS+  ++V +WN+M+S +   G     +  F  +      P + + 
Sbjct: 105 YAKCAQVSYAEKQFNSLE-KDVTAWNSMLSMYSSIGQPGKVLRSFVSLFENLIFPNKFTF 163

Query: 124 SLSALVSGLIQNGELDEAARV-LVKCG----SRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
           S+    S    N E        ++K G    S C G          L+  Y +  R+ +A
Sbjct: 164 SIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGA---------LVDMYAKCDRLGDA 214

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTF 234
           +++FD I               N V W  +   Y KAG    A  +FE+M       D  
Sbjct: 215 QRVFDGI------------VDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHL 262

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
           ++ T+I+ YI +  +++A  LF +MP PD + WN M+SG+ +                  
Sbjct: 263 AFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGK------------------ 304

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
                    GCE       AI+ F+ M+    K  R T  S+LS    + +L LG+ +H 
Sbjct: 305 --------RGCEIV-----AIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHA 351

Query: 355 MVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
              K  +  ++ + ++L++MY++C  +  A  +FE ++  +N V WNAMI G A +G + 
Sbjct: 352 EAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALE-ERNDVLWNAMIRGYAHNGESH 410

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           + +ELF  M+S        TF S+LS CA +  +E G Q F S++ +  +   +    +L
Sbjct: 411 KVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQ-FHSIIIKKKLTKNLFVGNAL 469

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           VD+  + G LEDA  + + M  + D   W  ++G 
Sbjct: 470 VDMYAKCGALEDARQIFEHMC-DRDNVSWNTIIGG 503


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 195/612 (31%), Positives = 307/612 (50%), Gaps = 79/612 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++S + K   +A AR +F EMP+RD VSW VM+ G   +R   F E  + L D+  +   
Sbjct: 104 LLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGL--NRAGRFGEAIKTLLDMTADGFT 161

Query: 59  -----------------------------------DCV-TWNTVISGYAKTGEMEEALRL 82
                                               CV   N+V++ Y K G+ E A  +
Sbjct: 162 PTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTV 221

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAA 142
           F  MP R+V SWNAM+S     G +  A   F+ MPGR   S +A+++G  QNG   +A 
Sbjct: 222 FERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKAL 281

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
           ++  +         D      +++      G V   +++   I               N 
Sbjct: 282 KLFSRMLHESSMAPDEF-TITSVLSACANLGNVRIGKQVHAYIL--------RTEMAYNS 332

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP 262
              N++I  YAK+G V +AR I +Q +E D                              
Sbjct: 333 QVTNALISTYAKSGSVENARRIMDQSMETDL----------------------------- 363

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           + +++ A++ GY +IG++E A + F  M  +++V+W +MI G E N   + AI LF  M 
Sbjct: 364 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 423

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIV 381
             G +P+ +T +++LS+ + +  L  G QIH    ++++     ++NA+ITMYAR G+  
Sbjct: 424 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFP 483

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
            AR +F+++   K  ++W +MI   A HG   EA+ LF+ M    V P  IT++ VLSAC
Sbjct: 484 WARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 543

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
           +HAG V EG++++  + NE+ I P + H+A +VD++ R G   +A + I+ MP EPD   
Sbjct: 544 SHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIA 603

Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
           WG+LL ACRVH N ELA++AAE L+ ++P NS  Y  + N+Y+  GRW DA  +    K 
Sbjct: 604 WGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKE 663

Query: 562 NNIKKPTGYSWV 573
             ++K TG+SW 
Sbjct: 664 KAVRKETGFSWT 675



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 140/575 (24%), Positives = 232/575 (40%), Gaps = 170/575 (29%)

Query: 139 DEAARVLVKCGSRCDGGED------------LVRAY--NTLIVGYGQR----GRVEEARK 180
           D  AR+L  C +  + G              L  AY  N L+  YG+     G + +AR+
Sbjct: 27  DHYARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARR 86

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LFD+IP+           +RN+ +WNS++  +AK+G +  AR +F +M ERD  SW  M+
Sbjct: 87  LFDEIPLA----------RRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMV 136

Query: 241 SGYIHVLDMEEASNLFVKM------PHPDTLT---------------------------- 266
            G        EA    + M      P   TLT                            
Sbjct: 137 VGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLG 196

Query: 267 -----WNAMVSGYAQIGNLELALDFFKR-------------------------------M 290
                 N++++ Y + G+ E A   F+R                               M
Sbjct: 197 SCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESM 256

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLG 349
           P +++VSWN+MIAG   N     A+KLF +M  E    PD  T +S+LS  + + ++ +G
Sbjct: 257 PGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIG 316

Query: 350 MQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEE-----------MKLL---- 393
            Q+H  + +T +  +  + NALI+ YA+ G++  AR I ++             LL    
Sbjct: 317 KQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYV 376

Query: 394 -----------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
                            ++VV+W AMI G   +G   EA++LF+SM +    P   T  +
Sbjct: 377 KIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAA 436

Query: 437 VLSACAHAGLVEEGRQ-HFKS------------------------------MVNEYGIEP 465
           VLS CA    ++ G+Q H ++                              M ++     
Sbjct: 437 VLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRK 496

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNVELAQVAA 522
               + S++  + +HG+ E+A+ L + M     EPD+  +  +L AC     V   +   
Sbjct: 497 ETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYY 556

Query: 523 EAL---MKVEPENSTPYVLLYNMYADVGRWDDANE 554
           + +    ++ PE S  Y  + ++ A  G + +A E
Sbjct: 557 DQIKNEHQIAPEMS-HYACMVDLLARAGLFSEAQE 590


>gi|356551872|ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Glycine max]
          Length = 945

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 204/657 (31%), Positives = 341/657 (51%), Gaps = 88/657 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           ++S Y K   + +ARK+FDEM +R++ +W+ MI     SR   + E     +D+M     
Sbjct: 124 LVSMYAKCGHLDEARKVFDEMRERNLFTWSAMIGA--CSRDLKWEEVVELFYDMMQHGVL 181

Query: 58  ----------------RDCVTW-------------------NTVISGYAKTGEMEEALRL 82
                           RD  T                    N++++ YAK GEM  A ++
Sbjct: 182 PDDFLLPKVLKACGKFRDIETGRLIHSLVIRGGMCSSLHVNNSILAVYAKCGEMSCAEKI 241

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVSGLIQNG 136
           F  M  RN VSWN +I+G+ Q G++  A ++FD M      PG    + + L++   Q G
Sbjct: 242 FRRMDERNCVSWNVIITGYCQRGEIEQAQKYFDAMQEEGMEPGL--VTWNILIASYSQLG 299

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF-DKIPVNCDRGEGN 195
             D A  ++ K  S   G    V  + ++I G+ Q+GR+ EA  L  D + V  +     
Sbjct: 300 HCDIAMDLMRKMESF--GITPDVYTWTSMISGFTQKGRINEAFDLLRDMLIVGVEPNSIT 357

Query: 196 VRFKR--------------------------NIVSWNSMIMCYAKAGDVVSAREIFEQML 229
           +                              +I+  NS+I  YAK GD+ +A+ IF+ ML
Sbjct: 358 IASAASACASVKSLSMGSEIHSIAVKTSMVDDILIGNSLIDMYAKGGDLEAAQSIFDVML 417

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALD 285
           ERD +SWN++I GY       +A  LF+KM      P+ +TWN M++G+ Q G+ + AL+
Sbjct: 418 ERDVYSWNSIIGGYCQAGFCGKAHELFMKMQESDSPPNVVTWNVMITGFMQNGDEDEALN 477

Query: 286 FFKRMPQK-----NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
            F R+ +      N+ SWNS+I+G   N+  + A+++F QMQ     P+  T  +IL   
Sbjct: 478 LFLRIEKDGKIKPNVASWNSLISGFLQNRQKDKALQIFRQMQFSNMAPNLVTVLTILPAC 537

Query: 341 SGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           + +V      +IH   T+  ++ ++ ++N  I  YA+ G I+ +R +F+ +   K+++SW
Sbjct: 538 TNLVAAKKVKEIHCCATRRNLVSELSVSNTFIDSYAKSGNIMYSRKVFDGLSP-KDIISW 596

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N+++ G   HG +  AL+LF  MR   + P+ +T  S++SA +HA +V+EG+  F ++  
Sbjct: 597 NSLLSGYVLHGCSESALDLFDQMRKDGLHPSRVTLTSIISAYSHAEMVDEGKHAFSNISE 656

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
           EY I   +EH++++V ++GR G+L  A++ I+ MP EP+ +VW ALL ACR+H N  +A 
Sbjct: 657 EYQIRLDLEHYSAMVYLLGRSGKLAKALEFIQNMPVEPNSSVWAALLTACRIHKNFGMAI 716

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
            A E +++++PEN     LL   Y+  G+  +A ++  L K   +K P G SW++ +
Sbjct: 717 FAGEHMLELDPENIITQHLLSQAYSVCGKSWEAQKMTKLEKEKFVKMPVGQSWIEMN 773



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 119/485 (24%), Positives = 190/485 (39%), Gaps = 92/485 (18%)

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
           L  NG L EA  +L     +  G +     +  L+     +  +   R+L  +I      
Sbjct: 59  LCANGSLSEAVAILDSLAQQ--GSKVRPITFMNLLQACIDKDCILVGRELHTRI------ 110

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEE 251
             G VR K N      ++  YAK G +  AR++F++M ER+ F+W+ MI      L  EE
Sbjct: 111 --GLVR-KVNPFVETKLVSMYAKCGHLDEARKVFDEMRERNLFTWSAMIGACSRDLKWEE 167

Query: 252 ASNLFVKMPH----PDTLTW-----------------------------------NAMVS 272
              LF  M      PD                                       N++++
Sbjct: 168 VVELFYDMMQHGVLPDDFLLPKVLKACGKFRDIETGRLIHSLVIRGGMCSSLHVNNSILA 227

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
            YA+ G +  A   F+RM ++N VSWN +I G     + E A K F  MQ EG +P   T
Sbjct: 228 VYAKCGEMSCAEKIFRRMDERNCVSWNVIITGYCQRGEIEQAQKYFDAMQEEGMEPGLVT 287

Query: 333 FSSILSMSSGIVDLHLGMQI-HQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
           ++ +++  S +    + M +  +M +  + PDV                           
Sbjct: 288 WNILIASYSQLGHCDIAMDLMRKMESFGITPDV--------------------------- 320

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
                 +W +MI G    G   EA +L + M    V P  IT  S  SACA    +  G 
Sbjct: 321 -----YTWTSMISGFTQKGRINEAFDLLRDMLIVGVEPNSITIASAASACASVKSLSMGS 375

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
           +   S+  +  +   I    SL+D+  + G LE A  +   M  E D   W +++G    
Sbjct: 376 E-IHSIAVKTSMVDDILIGNSLIDMYAKGGDLEAAQSIFDVM-LERDVYSWNSIIGG--- 430

Query: 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNM----YADVGRWDDANEVRLLMKSNNIKKP 567
           +        A E  MK++  +S P V+ +N+    +   G  D+A  + L ++ +   KP
Sbjct: 431 YCQAGFCGKAHELFMKMQESDSPPNVVTWNVMITGFMQNGDEDEALNLFLRIEKDGKIKP 490

Query: 568 TGYSW 572
              SW
Sbjct: 491 NVASW 495



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 123/270 (45%), Gaps = 11/270 (4%)

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPIN 367
           N     A+ +   +  +G K    TF ++L        + +G ++H  +      +  + 
Sbjct: 62  NGSLSEAVAILDSLAQQGSKVRPITFMNLLQACIDKDCILVGRELHTRIGLVRKVNPFVE 121

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
             L++MYA+CG + EAR +F+EM+  +N+ +W+AMIG C+      E +ELF  M    V
Sbjct: 122 TKLVSMYAKCGHLDEARKVFDEMR-ERNLFTWSAMIGACSRDLKWEEVVELFYDMMQHGV 180

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
           LP       VL AC     +E GR    S+V   G+   +    S++ +  + G +  A 
Sbjct: 181 LPDDFLLPKVLKACGKFRDIETGRL-IHSLVIRGGMCSSLHVNNSILAVYAKCGEMSCAE 239

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM----Y 543
            + + M  E +   W  ++        +E AQ   +A+   + E   P ++ +N+    Y
Sbjct: 240 KIFRRMD-ERNCVSWNVIITGYCQRGEIEQAQKYFDAM---QEEGMEPGLVTWNILIASY 295

Query: 544 ADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           + +G  D A ++   M+S  I  P  Y+W 
Sbjct: 296 SQLGHCDIAMDLMRKMESFGI-TPDVYTWT 324


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 206/623 (33%), Positives = 337/623 (54%), Gaps = 66/623 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y+K   +    ++FDEM  ++VVSW  +++GY   R +G  E+A  LF  M     
Sbjct: 133 LVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGY---RQNGLNEQALKLFSQMQLEGI 189

Query: 57  ERDCVTWNTVISGYAKTGEMEEALR----------------------------------- 81
           + +  T+  V+ G A  G +E+ ++                                   
Sbjct: 190 KPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKA 249

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM---PGRDSASLSALVSGLIQNGEL 138
           +F+SM  RN VSWN+MI+GF+ NG    A E F RM     + + ++ A V  L  N + 
Sbjct: 250 VFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKE 309

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
              A+ L  C    +G +  +     L+V Y +   +++A KLF      C      +  
Sbjct: 310 MSFAKQL-HCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLF------C-----MMHG 357

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASN 254
            +N+VSW ++I  Y + G    A  +F QM    +  + F+++T+++    V    +   
Sbjct: 358 VQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAV-SPSQIHA 416

Query: 255 LFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
           L VK  + ++ +   A+   Y++IG+   A   F+ + +K++V+W++M++G     D EG
Sbjct: 417 LVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEG 476

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSG-IVDLHLGMQIHQMVTKTVIPD-VPINNALI 371
           A+K+F+Q+  EG +P+  TFSS+L+  +     +  G Q H    K+   + + +++AL+
Sbjct: 477 AVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALV 536

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
           TMYA+ G I  A  +F+  ++ +++VSWN+MI G A HG   ++L++F+ MRS  +    
Sbjct: 537 TMYAKRGNIESANEVFKR-QVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDG 595

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           ITFI V+SAC HAGLV EG+++F  MV +Y I P +EH++ +VD+  R G LE AMDLI 
Sbjct: 596 ITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLIN 655

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
            MPF     +W  LL ACRVH NV+L ++AAE L+ ++P++S  YVLL N+YA  G W +
Sbjct: 656 KMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQE 715

Query: 552 ANEVRLLMKSNNIKKPTGYSWVD 574
             +VR LM    +KK  GYSW++
Sbjct: 716 RAKVRKLMDMKKVKKEAGYSWIE 738



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 131/474 (27%), Positives = 234/474 (49%), Gaps = 46/474 (9%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D     +++  Y KT  +E+  R+F+ M  +NVVSW ++++G+ QNG    A++ F +M 
Sbjct: 126 DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQ 185

Query: 119 ----GRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
                 +  + +A++ GL  +G +++  +V   ++K      G +  +   N+++  Y +
Sbjct: 186 LEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIK-----SGLDSTIFVGNSMVNMYSK 240

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--- 228
              V +A+ +FD +              RN VSWNSMI  +   G  + A E+F +M   
Sbjct: 241 SLMVSDAKAVFDSME------------NRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLE 288

Query: 229 ---LERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLE 281
              L +  F+  T+I    ++ +M  A  L  ++       D     A++  Y++   ++
Sbjct: 289 GVKLTQTIFA--TVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEID 346

Query: 282 LALDFFKRMPQ-KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
            A   F  M   +N+VSW ++I+G   N   + A+ LF QM+ EG +P+  T+S+IL+ +
Sbjct: 347 DAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTAN 406

Query: 341 SGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           + +       QIH +V KT   + P +  AL   Y++ G   EA  IFE +   K++V+W
Sbjct: 407 AAVSP----SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELID-EKDIVAW 461

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH-AGLVEEGRQHFKSMV 458
           +AM+ G A  G    A+++F  +    V P   TF SVL+ACA     VE+G+Q F S  
Sbjct: 462 SAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQ-FHSCS 520

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
            + G    +   ++LV +  + G +E A ++ K    + D   W +++     H
Sbjct: 521 IKSGFSNALCVSSALVTMYAKRGNIESANEVFK-RQVDRDLVSWNSMISGYAQH 573



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 177/402 (44%), Gaps = 59/402 (14%)

Query: 181 LFDKI---PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           LFD+I    V+C   +    F  ++    S++  Y K   V     +F++M  ++  SW 
Sbjct: 105 LFDRIVGKQVHCQCIKCG--FVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWT 162

Query: 238 TMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALD-------- 285
           ++++GY      E+A  LF +M      P+  T+ A++ G A  G +E  +         
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS 222

Query: 286 ---------------------------FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
                                       F  M  +N VSWNSMIAG  TN     A +LF
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELF 282

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARC 377
            +M++EG K  +  F++++ + + I ++    Q+H Q++      D+ I  AL+  Y++C
Sbjct: 283 YRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKC 342

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
             I +A  +F  M  ++NVVSW A+I G   +G    A+ LF  MR   V P + T+ ++
Sbjct: 343 SEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTI 402

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           L+A A    V   + H   +   Y   P +    +L D   + G   +A  + + +  E 
Sbjct: 403 LTANA---AVSPSQIHALVVKTNYENSPSVG--TALSDSYSKIGDANEAAKIFELID-EK 456

Query: 498 DKAVWGALLGACRVHNNVELA-----QVAAEALMKVEPENST 534
           D   W A+L       ++E A     Q+A E    VEP   T
Sbjct: 457 DIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEG---VEPNEFT 495



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 123/246 (50%), Gaps = 7/246 (2%)

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F   PQ+ L   N ++     N   + A+ LF+ ++  G   D  + S +L +   + D
Sbjct: 48  LFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFD 107

Query: 346 LHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
             +G Q+H Q +    + DV +  +L+ MY +  ++ +   +F+EM+ +KNVVSW +++ 
Sbjct: 108 RIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMR-VKNVVSWTSLLA 166

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           G   +G   +AL+LF  M+   + P   TF +VL   A  G VE+G Q   +MV + G++
Sbjct: 167 GYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSGLD 225

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV-WGALLGACRVHNNVELAQVAAE 523
             I    S+V++  +   + DA  +   M  E   AV W +++ A  V N ++L      
Sbjct: 226 STIFVGNSMVNMYSKSLMVSDAKAVFDSM--ENRNAVSWNSMI-AGFVTNGLDLEAFELF 282

Query: 524 ALMKVE 529
             M++E
Sbjct: 283 YRMRLE 288



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 23/220 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +++ Y KR  +  A ++F     RD+VSWN MISGY +  G G  +++  +F+ M     
Sbjct: 535 LVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGY-AQHGCG--KKSLKIFEEMRSKNL 591

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
           E D +T+  VIS     G + E  R F+ M         +  ++ M+  + + G +  A+
Sbjct: 592 ELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAM 651

Query: 112 EFFDRMPGRDSASL------SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTL 165
           +  ++MP    A++      +  V   +Q GEL  AA  L+    +      L+      
Sbjct: 652 DLINKMPFPAGATIWRTLLAACRVHLNVQLGEL--AAEKLISLQPQDSAAYVLLSNIYAT 709

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
              + +R +V   RKL D   V  + G   +  K    S+
Sbjct: 710 AGNWQERAKV---RKLMDMKKVKKEAGYSWIEVKNKTFSF 746


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 161/415 (38%), Positives = 255/415 (61%), Gaps = 13/415 (3%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N LI  Y +   + +A+K+FD++              R++VSWN+ +    + G+V +AR
Sbjct: 168 NALIDAYSKNQGLSDAKKVFDEMTT------------RDVVSWNTAMAAMVRQGEVDAAR 215

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
            +F++M E+DT SWNTM+ GY    + E+A  LF +MP  + ++W+ +VS Y + G++E+
Sbjct: 216 SMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEM 275

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F +MP KNLV+W  M++ C      E A +LF +M     + D     SIL+  + 
Sbjct: 276 ARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAE 335

Query: 343 IVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
              L LG +IH+ V +  +     + NAL+ M+ +CG +  A  IF+   + K++VSWN 
Sbjct: 336 SGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNI 395

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           +IGG A HG   +ALELF  M+     P  +T I+VLSAC H GLVEEGR+ F +M  +Y
Sbjct: 396 IIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDY 455

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           GI+P+IEH+  +VD++GR G +++A+D+IK MP+EP++ +WG+LL ACR+H NVE A++A
Sbjct: 456 GIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELA 515

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
              L  ++P ++  Y +L N+YA+ G+W D  + R+ MK    +K  G SW++ +
Sbjct: 516 VNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELN 570



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 180/357 (50%), Gaps = 57/357 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K + ++ A+K+FDEM  RDVVSWN  ++  +     G ++ AR +FD MPE+D 
Sbjct: 170 LIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQ---GEVDAARSMFDEMPEKDT 226

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT++ GYAK GE E+A  LF  MP RNVVSW+ ++S + + GD+  A   FD+MP +
Sbjct: 227 VSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAK 286

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEEAR 179
           +  + + +VS   Q G ++EA R+  +     D   +L V A  +++    + G +   +
Sbjct: 287 NLVTWTIMVSACAQKGLVEEAGRLFTEM---MDAAIELDVIAVVSILAACAESGSLALGK 343

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE-QMLERDTFSWNT 238
           ++         R     +  R+ +  N+++  + K G V  A  IF+ +++E+D  SWN 
Sbjct: 344 RIH--------RHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNI 395

Query: 239 MISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIG----------NLEL-- 282
           +I G+      E+A  LF +M     HPD +T   ++S    +G          N+E   
Sbjct: 396 IIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDY 455

Query: 283 ------------------------ALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
                                   A+D  KRMP + N V W S+++ C  +K+ E A
Sbjct: 456 GIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYA 512



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 188/410 (45%), Gaps = 33/410 (8%)

Query: 14  ARKLFDEMP--QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYA 71
           A  +F ++P  QR   +++ +I    ++  +       ++  +    D    N +I  Y+
Sbjct: 116 ALAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYS 175

Query: 72  KTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSG 131
           K   + +A ++F+ M  R+VVSWN  ++  ++ G+V  A   FD MP +D+ S + ++ G
Sbjct: 176 KNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDG 235

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
             + GE ++A  +  +   R       V +++T++  Y ++G +E AR +FDK+P     
Sbjct: 236 YAKAGEAEKAFELFQRMPGRN------VVSWSTVVSAYCKKGDMEMARVIFDKMPA---- 285

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEE 251
                   +N+V+W  M+   A+ G V  A  +F +M++      + +    I     E 
Sbjct: 286 --------KNLVTWTIMVSACAQKGLVEEAGRLFTEMMDA-AIELDVIAVVSILAACAES 336

Query: 252 ASNLFVKMPH---------PDTLTWNAMVSGYAQIGNLELALDFF-KRMPQKNLVSWNSM 301
            S    K  H           TL  NA++  + + G +  A   F   + +K+LVSWN +
Sbjct: 337 GSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNII 396

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKT 359
           I G   +   E A++LF QM+ +G  PD  T  ++LS  +  G+V+       +      
Sbjct: 397 IGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYG 456

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           + P +     ++ +  R G I EA  + + M    N V W +++  C  H
Sbjct: 457 IKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLH 506


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 209/745 (28%), Positives = 353/745 (47%), Gaps = 175/745 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-D 59
           +I  YVK   +  A K+F+EMPQRD+VSWN M+ G     G+G +E A+ +F+ MP   D
Sbjct: 65  LIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFG---CAGAGRMELAQAVFNSMPHHGD 121

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMP-------------------------------- 87
            V+WN++ISGY + G++++++ +F  M                                 
Sbjct: 122 VVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHG 181

Query: 88  -------ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGEL-- 138
                    +VV+ +A++  + +   + ++++ F  +P ++  S SA ++G +QN +L  
Sbjct: 182 IAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLR 241

Query: 139 -----------------DEAARVLVKCG-------------------------------- 149
                               A V   C                                 
Sbjct: 242 GLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLD 301

Query: 150 --SRCDGGEDLVR-----------AYNTLIVGYGQRGRVEEARKLFDKIPVNC------- 189
             ++CD   D  +           +YN +I+GY +  +  +A KLF ++  N        
Sbjct: 302 MYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVS 361

Query: 190 ------------DRGEG--------NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
                          EG              NI   N+++  Y K G +V A  +F++M 
Sbjct: 362 LSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEME 421

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTW------------------ 267
            RD  SWN +I+         +  + F  M      PD  T+                  
Sbjct: 422 IRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGME 481

Query: 268 -----------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
                            +A+V  Y++ G +E A     R+ ++ +VSWN++I+G    K 
Sbjct: 482 VHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKK 541

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNA 369
            E + + F  M   G +PD  T++++L   + +  + LG QIH QM+   ++ DV I + 
Sbjct: 542 SEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITST 601

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           L+ MY++CG + ++ ++F +    ++ V+WNAMI G A HG   EALELF+ M    + P
Sbjct: 602 LVDMYSKCGNMHDSLLMFRKAP-KRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKP 660

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
            + TF+SVL AC+H G  ++G  +F+ M + Y +EP++EH++ +VDI+GR G++E+A+ L
Sbjct: 661 NHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRL 720

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
           I+ MPFE D  +W  LL  C++  NVE+A+ AA +L+K++PE+S+ Y LL N+YAD G W
Sbjct: 721 IQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMW 780

Query: 550 DDANEVRLLMKSNNIKKPTGYSWVD 574
              +++R  M+S+N+KK  G SW++
Sbjct: 781 QQVSKIRQTMRSHNLKKEPGCSWIE 805



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 159/577 (27%), Positives = 277/577 (48%), Gaps = 56/577 (9%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +I  Y+       LE A  +F+ MP+RD V+WNT++ G A  G ME A  +FNSMP  
Sbjct: 63  NCLIQMYVKCCA---LEYAYKVFEEMPQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHH 119

Query: 90  -NVVSWNAMISGFLQNGDVANAIEFFDRMPGRD--------SASLSALVSGLIQNGELD- 139
            +VVSWN++ISG+LQNGD+  +I  F +M  RD        + ++S  +  L+++  L  
Sbjct: 120 GDVVSWNSLISGYLQNGDIQKSIAVFLKM--RDLGVMFDHTTLAVSLKICSLLEDQVLGI 177

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           +   + V+ G   D     V   + L+  Y +   +E++  +F ++P             
Sbjct: 178 QIHGIAVQMGFDYD-----VVTGSALVDMYAKCNSLEDSLDVFSELP------------D 220

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
           +N +SW++ I    +   ++   ++F++M  +      +  +          AS L  ++
Sbjct: 221 KNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQL 280

Query: 260 P--------HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
                      D +   A +  YA+  N+  A   F  +P  NL S+N+MI G   N+  
Sbjct: 281 HCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQG 340

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNAL 370
             A KLF+Q+Q      D  + S  LS ++ I     G+Q+H +  K+ +  ++ + NA+
Sbjct: 341 FQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAI 400

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           + MY +CGA+VEA  +F+EM+ +++ VSWNA+I  C  +    + L  F +M   K+ P 
Sbjct: 401 LDMYGKCGALVEASGLFDEME-IRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPD 459

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
             T+ SVL ACA       G +    ++   G+  ++   ++LVD+  + G +E+A  + 
Sbjct: 460 EFTYGSVLKACAGQRAFSNGMEVHGRIIKS-GMGLKMFVGSALVDMYSKCGMMEEAEKIH 518

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL--MKVEPENSTPYVLLYNMYAD--- 545
             +  E     W A++    +    E +Q     +  M VEP+N T Y  + +  A+   
Sbjct: 519 YRLE-EQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFT-YATVLDTCANLAT 576

Query: 546 --VGRWDDANEVRLLMKSNNIKKPTGYSWVD-FSPCG 579
             +G+   A  ++L + S+     T    VD +S CG
Sbjct: 577 VGLGKQIHAQMIKLELLSDVYITST---LVDMYSKCG 610



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 140/300 (46%), Gaps = 37/300 (12%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F   +   N +I  Y K   +  A ++FE+M +RD  SWNTM+ G      ME A  +F 
Sbjct: 55  FTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFGCAGAGRMELAQAVFN 114

Query: 258 KMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
            MPH  D ++WN+++SGY Q                               N D + +I 
Sbjct: 115 SMPHHGDVVSWNSLISGYLQ-------------------------------NGDIQKSIA 143

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYA 375
           +F++M+  G   D  T +  L + S + D  LG+QIH +  +     DV   +AL+ MYA
Sbjct: 144 VFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYA 203

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +C ++ ++  +F E+   KN +SW+A I GC  +      L+LFK M+   +  +  T+ 
Sbjct: 204 KCNSLEDSLDVFSELP-DKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYA 262

Query: 436 SVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           SV  +CA       G Q H  ++  ++G +  +    + +D+  +   + DA  L   +P
Sbjct: 263 SVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVG--TATLDMYAKCDNMSDAYKLFSLLP 320



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 42/216 (19%)

Query: 330 RHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFE 388
           R TFS I    S    L  G + H  M+     P V + N LI MY +C A+  A  +FE
Sbjct: 24  RKTFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFE 83

Query: 389 EMKLLKNVVSWNAMIGGCA--------------------------------SHGFATEAL 416
           EM   +++VSWN M+ GCA                                 +G   +++
Sbjct: 84  EMP-QRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSI 142

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEE---GRQHFKSMVNEYGIEPRIEHFASL 473
            +F  MR   V+  + T    L  C+   L+E+   G Q    +  + G +  +   ++L
Sbjct: 143 AVFLKMRDLGVMFDHTTLAVSLKICS---LLEDQVLGIQ-IHGIAVQMGFDYDVVTGSAL 198

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           VD+  +   LED++D+   +P + +   W A +  C
Sbjct: 199 VDMYAKCNSLEDSLDVFSELP-DKNWISWSAAIAGC 233


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 211/612 (34%), Positives = 319/612 (52%), Gaps = 65/612 (10%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSG----FLEEAR--------YLF--------- 52
           A KLFDEMP +D V+WN MI+GY+ S   G    FL+  +        Y F         
Sbjct: 55  ACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWEFLKSMKRRGFQADGYTFGSILKGVAH 114

Query: 53  ---------------DIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM 97
                           I  E+     + ++  YAK   +E+A  +F  MP RN VSWNA+
Sbjct: 115 ACRHDLGQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSWNAL 174

Query: 98  ISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCD 153
           I GF+Q GD   A    D M       +  + + L++ L  +G+      + + C     
Sbjct: 175 IDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTFAPLLTLL--DGDKFYKLTMQLHCKIIKH 232

Query: 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
           G E      N  +  Y + G +E+A+++FD          G V   R++V+WNSM++ Y 
Sbjct: 233 GLEFYNALCNATLTAYSECGLLEDAKRVFD----------GAVG-TRDLVTWNSMLVAYL 281

Query: 214 KAGDVVSAREIFEQM----LERDTFSWNTMISGYI---HVLDMEEASNLFVKMPHPDTLT 266
                  A  +F +M     E D +++  +IS      H    +    L +K    +++T
Sbjct: 282 VHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKSFHALVIKRGLEESVT 341

Query: 267 -WNAMVSGYAQIGN--LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
             NA+++ Y ++ N  +E AL+ F  M  K+ VSWNS++ G       E A+KLF  M+ 
Sbjct: 342 ICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRS 401

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVE 382
             E+ D + +S++L   S +  L LG QIH +  KT    +  + ++LI MY++CG I +
Sbjct: 402 SLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIED 461

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           A   FE+    ++ ++WN+++   A HG    AL+LF  MR  +V   ++TF++VL+AC+
Sbjct: 462 AWKCFEDTTK-ESSITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAVLTACS 520

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
           H GLVE+GR   KSM ++YGI PR+EH+A  VD+ GR G LE+A  LI  MPF+P+  V 
Sbjct: 521 HVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGYLEEAKALIDSMPFQPNAMVL 580

Query: 503 GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
             LLGACR   N+ELA   A  L++VEPE    YV+L NMY  + RWDD   V  LM+  
Sbjct: 581 KTLLGACRACGNIELAAQVASQLLEVEPEEHCTYVILSNMYGHLKRWDDKASVTRLMRER 640

Query: 563 NIKKPTGYSWVD 574
            +KK  G+SW++
Sbjct: 641 KVKKVPGWSWIE 652



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 130/478 (27%), Positives = 237/478 (49%), Gaps = 45/478 (9%)

Query: 64  NTVISGYAK--TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR- 120
           N ++  Y+K  +G++  A +LF+ MP ++ V+WN MI+G++++G++  A EF   M  R 
Sbjct: 38  NNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWEFLKSMKRRG 97

Query: 121 ---DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
              D  +  +++ G+      D   +V   +VK G      E  V A + L+  Y +  R
Sbjct: 98  FQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGY-----EQSVYAGSALLDMYAKCER 152

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
           VE+A  +F  +PV            RN VSWN++I  + + GD  +A  + + M +    
Sbjct: 153 VEDAYDVFQGMPV------------RNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVR 200

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPHPDTLT---------WNAMVSGYAQIGNLELALD 285
             +   +  + +LD ++   L +++ H   +           NA ++ Y++ G LE A  
Sbjct: 201 VEDGTFAPLLTLLDGDKFYKLTMQL-HCKIIKHGLEFYNALCNATLTAYSECGLLEDAKR 259

Query: 286 FFK-RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
            F   +  ++LV+WNSM+     +   E A  LF++MQ  G +PD +T++ ++S      
Sbjct: 260 VFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAA 319

Query: 345 DLHLGMQIHQMVTKTVIPD-VPINNALITMYARCG--AIVEARIIFEEMKLLKNVVSWNA 401
             + G   H +V K  + + V I NALITMY +    ++  A  +F  MK  K+ VSWN+
Sbjct: 320 HKNYGKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMK-SKDRVSWNS 378

Query: 402 MIGGCASHGFATEALELFKSMR-SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           ++ G +  GF+ +AL+LF  MR S + +  Y  + +VL +C+   +++ G+Q    +  +
Sbjct: 379 ILTGFSQMGFSEDALKLFGHMRSSLEEIDDY-AYSAVLRSCSDLAILQLGQQ-IHLLTVK 436

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            G +      +SL+ +  + G +EDA    +    E     W +++ A   H   ++A
Sbjct: 437 TGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKES-SITWNSIMFAYAQHGQGDVA 493


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 226/718 (31%), Positives = 338/718 (47%), Gaps = 151/718 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           ++ GY K   +  AR+LFD MP R++VSW   IS Y      G  ++A  LF   P    
Sbjct: 71  LLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQH---GREDDALLLFAAFPSAGA 127

Query: 58  -----------------RDCV-------------------------TWNTVISGYAKTGE 75
                            R C                              +++ YAK G 
Sbjct: 128 ASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGR 187

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS--------ASLSA 127
           ++ A+ +F+++PARN V+W A+I+G+ Q G    A+E F RM G D         AS ++
Sbjct: 188 IDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRM-GLDGVRPDRFVLASAAS 246

Query: 128 LVSGL--IQNG------------ELDEAA-RVLVKCGSRC----------DGGEDL-VRA 161
             SGL  ++ G            E D +    L+    +C          D  E+  + +
Sbjct: 247 ACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVS 306

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIP--------------VNCDRGEGNVRFKRNIVSW-- 205
           + T+I GY Q     EA  +F ++               +N       +   R + +   
Sbjct: 307 WTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVI 366

Query: 206 -----------NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASN 254
                      N++I  YAK   +  AR +FE + E D  S+N MI GY  + D+  A  
Sbjct: 367 KADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVE 426

Query: 255 LFVKMPH----PDTLTWNAMVSGYAQIGNLELA-------------LDF----------- 286
           +F KM +    P  LT+ +++   +   +LEL+             LD            
Sbjct: 427 IFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYS 486

Query: 287 -----------FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
                      F  M  +++V WN+MI G   N+  E A+KLF +++V G  P+  TF +
Sbjct: 487 KFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVA 546

Query: 336 ILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +++++S +  +  G Q H Q++      D  I+NALI MYA+CG I E R++FE   L K
Sbjct: 547 LVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFES-TLGK 605

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           +V+ WN+MI   A HG A EAL +F  M    V P Y+TF+SVLSACAHAGLV+EG  HF
Sbjct: 606 DVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEGLHHF 665

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
            SM  +Y +EP  EH+AS+V++ GR G+L  A + I+ MP EP   +W +LL AC +  N
Sbjct: 666 NSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIWRSLLSACHLFGN 725

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
           VE+ + A E  +  +P +S P VL+ N+YA  G W DA ++R  M    + K  GYSW
Sbjct: 726 VEIGRYATEMALLADPADSGPSVLMSNIYASKGLWADAQKLRQGMDCAGVVKEPGYSW 783



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/465 (29%), Positives = 223/465 (47%), Gaps = 32/465 (6%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D    N ++ GY+K G + +A RLF+SMP+RN+VSW + IS + Q+G   +A+  F   P
Sbjct: 64  DLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFP 123

Query: 119 GRDSASLSA------LVSGLIQNGELDEAARVLVKC-GSRCDGGEDLVRAYNTLIVG-YG 170
              +AS         L++  ++      AAR   +  G     G D      T +V  Y 
Sbjct: 124 SAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYA 183

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-- 228
           + GR++ A  +FD +P             RN V+W ++I  Y++AG    A E+F +M  
Sbjct: 184 KAGRIDAAMSVFDALPA------------RNPVTWTAVITGYSQAGQAGVALELFGRMGL 231

Query: 229 --LERDTFSWNTMISGYIHVLDMEEASNL----FVKMPHPDTLTWNAMVSGYAQIGNLEL 282
             +  D F   +  S    +  +E    +    +      D    NA++  Y +   L L
Sbjct: 232 DGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLL 291

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F  M  +NLVSW +MIAG   N     A+ +F Q+   G +PD    +SIL+    
Sbjct: 292 ARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGS 351

Query: 343 IVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  +  G Q+H  V K  +  D  + NALI MYA+C  + EAR +FE +    + +S+NA
Sbjct: 352 LAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALA-EDDAISYNA 410

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI G A  G  T A+E+F  MR   + P+ +TF+S+L   +    +E  +Q    ++ + 
Sbjct: 411 MIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQ-IHGLIVKS 469

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           G    +   ++L+D+  +   ++DA  L+  +    D  +W A++
Sbjct: 470 GTSLDLYAGSALIDVYSKFSLVDDA-KLVFSLMQNRDMVIWNAMI 513



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 111/243 (45%), Gaps = 17/243 (6%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           PD    N ++ GY+++G L  A   F  MP +NLVSW S I+    +   + A+ LF   
Sbjct: 63  PDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAF 122

Query: 322 ------QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMY 374
                   +GE P+    +S L   +       G Q+H +  K  +  +V +  AL+ +Y
Sbjct: 123 PSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLY 182

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           A+ G I  A  +F+ +   +N V+W A+I G +  G A  ALELF  M    V P     
Sbjct: 183 AKAGRIDAAMSVFDALP-ARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVL 241

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS----LVDIVGRHGRLEDAMDLI 490
            S  SAC+  G VE GRQ     ++ Y      E  AS    L+D+  +  RL  A  L 
Sbjct: 242 ASAASACSGLGFVEGGRQ-----IHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLF 296

Query: 491 KGM 493
             M
Sbjct: 297 DSM 299


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 210/611 (34%), Positives = 332/611 (54%), Gaps = 78/611 (12%)

Query: 23  QRDVVSWNVMISGYISSRGSGFLEEARYLFDIM-----PERDCVT-------------WN 64
           +RD+VSW+ +IS Y ++  +   E     FD++     P   C T               
Sbjct: 4   KRDLVSWSALISCYANNEKA--FEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLG 61

Query: 65  TVISGY----------------------AKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
            +I G+                         G++E A ++F+ MP RNVV+W  MI+ F 
Sbjct: 62  KIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQ 121

Query: 103 QNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAAR---VLVKCGSRCDG- 154
           Q G   +A++ F  M       D  +LS +VS   + G L    +   +++K G   D  
Sbjct: 122 QLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVC 181

Query: 155 -GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
            G  LV  Y   +      G V++ARK+FD++PV+            N++SW ++I  Y 
Sbjct: 182 VGCSLVDMYAKCVAD----GSVDDARKVFDRMPVH------------NVMSWTAIITGYV 225

Query: 214 KAGDV-VSAREIFEQMLE----RDTFSWNTMISGYIHVLDM---EEASNLFVKMPHPD-T 264
           ++G     A E+F +M++     + F++++++    ++ D+   E+   L VKM      
Sbjct: 226 QSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASIN 285

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
              N+++S Y++ GN+E A   F  + +KNLVS+N+++     + + E A +LF +++  
Sbjct: 286 CVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGA 345

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEA 383
           G   +  TF+S+LS +S I  +  G QIH  + K+    ++ I NALI+MY+RCG I  A
Sbjct: 346 GTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAA 405

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
             +F EM    NV+SW +MI G A HGFAT ALE F  M    V P  +T+I+VLSAC+H
Sbjct: 406 FQVFNEMGD-GNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSH 464

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
            GL+ EG +HFKSM  E+GI PR+EH+A +VD++GR G LE+AM+L+  MPF+ D  V  
Sbjct: 465 VGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLR 524

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
             LGACRVH N++L + AAE +++ +P +   Y+LL N++A  G+W++  E+R  MK  N
Sbjct: 525 TFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERN 584

Query: 564 IKKPTGYSWVD 574
           + K  G SW++
Sbjct: 585 LTKEAGCSWIE 595



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 213/471 (45%), Gaps = 81/471 (17%)

Query: 1   MISGYVKRR-EMAKARKLFDEMPQRDVVSWNVMI---------------------SGYIS 38
           +I  +VK   ++  A K+FD MP R+VV+W +MI                     SGY+ 
Sbjct: 84  LIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVP 143

Query: 39  SRGS-----------GFLEEARYLFDIMPER----DCVTWNTVISGYAKT---GEMEEAL 80
            R +           G L   R    ++ +     D     +++  YAK    G +++A 
Sbjct: 144 DRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDAR 203

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDV-ANAIEFFDRM-PGR---DSASLSALVSGL--- 132
           ++F+ MP  NV+SW A+I+G++Q+G     AIE F  M  G+   +  + S+++      
Sbjct: 204 KVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANL 263

Query: 133 --IQNGELDEAARVLVKCGS-RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
             I  GE   A  V ++  S  C G        N+LI  Y + G +E ARK FD      
Sbjct: 264 SDIWLGEQVYALVVKMRLASINCVG--------NSLISMYSRCGNMENARKAFD------ 309

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIH 245
                 V F++N+VS+N+++  YAK+ +   A E+F ++    T    F++ +++SG   
Sbjct: 310 ------VLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASS 363

Query: 246 VLDM---EEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           +  +   E+  +  +K      L   NA++S Y++ GN+E A   F  M   N++SW SM
Sbjct: 364 IGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSM 423

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKT 359
           I G   +     A++ F +M   G  P+  T+ ++LS  S  G++   L       V   
Sbjct: 424 ITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHG 483

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           ++P +     ++ +  R G + EA  +   M    + +     +G C  HG
Sbjct: 484 IVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHG 534



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/440 (22%), Positives = 196/440 (44%), Gaps = 78/440 (17%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRG------------------------SGFLEEAR 49
           ARK+FD MP  +V+SW  +I+GY+ S G                        S  L+   
Sbjct: 202 ARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACA 261

Query: 50  YLFDI--------------MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWN 95
            L DI              +   +CV  N++IS Y++ G ME A + F+ +  +N+VS+N
Sbjct: 262 NLSDIWLGEQVYALVVKMRLASINCVG-NSLISMYSRCGNMENARKAFDVLFEKNLVSYN 320

Query: 96  AMISGFLQNGDVANAIEFFDRMPGRDSA----SLSALVSGLIQNGELDEAARV---LVKC 148
            +++ + ++ +   A E F+ + G  +     + ++L+SG    G + +  ++   ++K 
Sbjct: 321 TIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS 380

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
           G + +     +   N LI  Y + G +E A ++F+++      G+GNV      +SW SM
Sbjct: 381 GFKSN-----LHICNALISMYSRCGNIEAAFQVFNEM------GDGNV------ISWTSM 423

Query: 209 IMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLF--VKMPH- 261
           I  +AK G    A E F +MLE     +  ++  ++S   HV  + E    F  +K+ H 
Sbjct: 424 ITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHG 483

Query: 262 --PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYE-GAIKL 317
             P    +  +V    + G+LE A++    MP K + +   + +  C  + + + G    
Sbjct: 484 IVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAA 543

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSG----IVDLHLGMQIHQMVTKTVIPDVPINNALITM 373
            + ++ +   P  +   S L  S+G    + ++   M+   +  +     + + N +   
Sbjct: 544 EMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKF 603

Query: 374 YARCGAIVEARIIFEEMKLL 393
           Y    +  +A+ I++E+  L
Sbjct: 604 YVGDTSHPQAQEIYDELDQL 623


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 210/641 (32%), Positives = 325/641 (50%), Gaps = 86/641 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--R 58
           +I+ Y K   +  ARKLFD++P+ D+V+   ++S Y S   SG ++ A+ LF+  P   R
Sbjct: 46  LINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSS---SGNVKLAQQLFNATPLTIR 102

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV----SWNAMISGFLQNGDVANAIEFF 114
           D V++N +I+ Y+   +   AL LF  M     +    ++++++S      D     +  
Sbjct: 103 DTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQML 162

Query: 115 D---------RMPGRDSASLSALV----SGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
                      +P   +A LS  V    S L+++ +L  +AR   K        +    +
Sbjct: 163 HCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASAR---KVFDETPKNQIYEPS 219

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           + T+I GY +   +  AR+L D +    D            V+WN+MI  Y + G    A
Sbjct: 220 WTTMIAGYVRNDDLVAARELLDGLTYPID------------VAWNAMISGYVRRGLYEEA 267

Query: 222 REIFEQM----LERDTFSWNTMIS-------------------GYI----------HVLD 248
            + F +M    ++ D +++ ++IS                   GYI           VL 
Sbjct: 268 FDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLS 327

Query: 249 --------------MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
                         M EA  +F KMP  D ++WNA++SGY     +E A   F  MP++N
Sbjct: 328 VNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERN 387

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           +++W  MI+G   N   E  +KLF QM+ EG +P  + F+  ++  S +  L  G QIH 
Sbjct: 388 VLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHS 447

Query: 355 MVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
            V +      +   NALITMY+RCG +  A  +F  M  + +V SWNAMI   A HG   
Sbjct: 448 QVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSV-SWNAMIAALAQHGHGV 506

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           +A+ELF+ M    +LP  ITF+++L+AC HAGL++EGR +F +M   YGI P  +H+A L
Sbjct: 507 KAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARL 566

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           +D++ R G    A  +IK MPFE    +W ALL  CR+H N+EL   AA+ L+++ P   
Sbjct: 567 IDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQD 626

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             Y++L NMYA +G+WD+   VRLLM+   +KK  G SWV+
Sbjct: 627 GTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVE 667



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 124/489 (25%), Positives = 199/489 (40%), Gaps = 139/489 (28%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N LI  Y +   +  ARKLFDKIP            K +IV+  +++  Y+ +G+V  A+
Sbjct: 44  NRLINIYCKSSNITYARKLFDKIP------------KPDIVARTTLLSAYSSSGNVKLAQ 91

Query: 223 EIFEQ--MLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQ 276
           ++F    +  RDT S+N MI+ Y H  D   A NLFV+M      PD  T+++++S  + 
Sbjct: 92  QLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSL 151

Query: 277 IGNLEL---------------------------------------------ALDFFKRMP 291
           I + E                                              A   F   P
Sbjct: 152 IADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETP 211

Query: 292 QKNLV--SWNSMIAGCETNKD-------------------------------YEGAIKLF 318
           +  +   SW +MIAG   N D                               YE A   F
Sbjct: 212 KNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTF 271

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM-----QIHQMVTKTVIPD-----VPINN 368
            +M   G + D +T++S++S + G  +  +GM     Q+H  + +TV+       + +NN
Sbjct: 272 RRMHSMGIQEDEYTYTSLIS-ACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNN 330

Query: 369 ALITMYARCGAIVEARIIFEEMKLL------------------------------KNVVS 398
           ALIT Y +   ++EAR +F++M +                               +NV++
Sbjct: 331 ALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLT 390

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           W  MI G A +GF  E L+LF  M+S  + P    F   ++AC+  G ++ G+Q   S V
Sbjct: 391 WTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQ-IHSQV 449

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
              G +  +    +L+ +  R G +E A  +   MP+  D   W A++ A   H +   A
Sbjct: 450 IRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPY-VDSVSWNAMIAALAQHGHGVKA 508

Query: 519 QVAAEALMK 527
               E +MK
Sbjct: 509 IELFEQMMK 517



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 172/404 (42%), Gaps = 61/404 (15%)

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
            I     + +TF  N +I+ Y    ++  A  LF K+P PD +    ++S Y+  GN++L
Sbjct: 30  HILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKL 89

Query: 283 ALDFFKRMPQ--KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           A   F   P   ++ VS+N+MI       D   A+ LF+QM+  G  PD  TFSS+LS  
Sbjct: 90  AQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSAL 149

Query: 341 SGIVDLHLGMQ-IHQMVTKTVIPDVP-INNALITMYARCGA---------IVEARIIFEE 389
           S I D     Q +H  V K     +P + NAL++ Y  C +         +  AR +F+E
Sbjct: 150 SLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDE 209

Query: 390 M---------------------------KLLKNV-----VSWNAMIGGCASHGFATEALE 417
                                       +LL  +     V+WNAMI G    G   EA +
Sbjct: 210 TPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFD 269

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHA----GLVEEGRQHFKSMVNEYGIEPRIEHFA-- 471
            F+ M S  +     T+ S++SAC       G+   GRQ     +    +EP   HF   
Sbjct: 270 TFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQ-VHGYILRTVVEPS-HHFVLS 327

Query: 472 ---SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528
              +L+    ++ R+ +A  +   MP   D   W A+L     + N +  + A     ++
Sbjct: 328 VNNALITFYTKYDRMIEARRVFDKMPVR-DIISWNAVLSG---YVNAQRIEEANSIFSEM 383

Query: 529 EPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
              N   + ++ +  A  G  ++  ++   MKS  + +P  Y++
Sbjct: 384 PERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGL-EPCDYAF 426


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 161/415 (38%), Positives = 255/415 (61%), Gaps = 13/415 (3%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N LI  Y +   + +A+K+FD++              R++VSWN+ +    + G+V +AR
Sbjct: 240 NALIDAYSKNQGLSDAKKVFDEMTT------------RDVVSWNTAMAAMVRQGEVDAAR 287

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
            +F++M E+DT SWNTM+ GY    + E+A  LF +MP  + ++W+ +VS Y + G++E+
Sbjct: 288 SMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEM 347

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F +MP KNLV+W  M++ C      E A +LF +M     + D     SIL+  + 
Sbjct: 348 ARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAE 407

Query: 343 IVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
              L LG +IH+ V +  +     + NAL+ M+ +CG +  A  IF+   + K++VSWN 
Sbjct: 408 SGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNI 467

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           +IGG A HG   +ALELF  M+     P  +T I+VLSAC H GLVEEGR+ F +M  +Y
Sbjct: 468 IIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDY 527

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           GI+P+IEH+  +VD++GR G +++A+D+IK MP+EP++ +WG+LL ACR+H NVE A++A
Sbjct: 528 GIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELA 587

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
              L  ++P ++  Y +L N+YA+ G+W D  + R+ MK    +K  G SW++ +
Sbjct: 588 VNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELN 642



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 180/357 (50%), Gaps = 57/357 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K + ++ A+K+FDEM  RDVVSWN  ++  +     G ++ AR +FD MPE+D 
Sbjct: 242 LIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQ---GEVDAARSMFDEMPEKDT 298

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT++ GYAK GE E+A  LF  MP RNVVSW+ ++S + + GD+  A   FD+MP +
Sbjct: 299 VSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAK 358

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEEAR 179
           +  + + +VS   Q G ++EA R+  +     D   +L V A  +++    + G +   +
Sbjct: 359 NLVTWTIMVSACAQKGLVEEAGRLFTE---MMDAAIELDVIAVVSILAACAESGSLALGK 415

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE-QMLERDTFSWNT 238
           ++         R     +  R+ +  N+++  + K G V  A  IF+ +++E+D  SWN 
Sbjct: 416 RIH--------RHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNI 467

Query: 239 MISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIG----------NLEL-- 282
           +I G+      E+A  LF +M     HPD +T   ++S    +G          N+E   
Sbjct: 468 IIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDY 527

Query: 283 ------------------------ALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
                                   A+D  KRMP + N V W S+++ C  +K+ E A
Sbjct: 528 GIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYA 584



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 191/414 (46%), Gaps = 41/414 (9%)

Query: 14  ARKLFDEMP--QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYA 71
           A  +F ++P  QR   +++ +I    ++  +       ++  +    D    N +I  Y+
Sbjct: 188 ALAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYS 247

Query: 72  KTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSG 131
           K   + +A ++F+ M  R+VVSWN  ++  ++ G+V  A   FD MP +D+ S + ++ G
Sbjct: 248 KNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDG 307

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
             + GE ++A  +  +   R       V +++T++  Y ++G +E AR +FDK+P     
Sbjct: 308 YAKAGEAEKAFELFQRMPGRN------VVSWSTVVSAYCKKGDMEMARVIFDKMPA---- 357

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVL 247
                   +N+V+W  M+   A+ G V  A  +F +M+    E D  +  ++++      
Sbjct: 358 --------KNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAAC---- 405

Query: 248 DMEEASNLFVKMPH---------PDTLTWNAMVSGYAQIGNLELALDFF-KRMPQKNLVS 297
             E  S    K  H           TL  NA++  + + G +  A   F   + +K+LVS
Sbjct: 406 -AESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVS 464

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQM 355
           WN +I G   +   E A++LF QM+ +G  PD  T  ++LS  +  G+V+       +  
Sbjct: 465 WNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANME 524

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
               + P +     ++ +  R G I EA  + + M    N V W +++  C  H
Sbjct: 525 TDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLH 578


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 197/624 (31%), Positives = 334/624 (53%), Gaps = 66/624 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG------------------- 41
           ++  Y+K   +   R +F+ MP+R+VV+W  +++GY+  R                    
Sbjct: 141 LVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPN 200

Query: 42  -------------SGFLEEARYLFDIMPERDC----VTWNTVISGYAKTGEMEEALRLFN 84
                         G ++  R +     +  C       N++I+ Y+K G +EEA  +F 
Sbjct: 201 PFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFR 260

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFD-------RMPGRDSASLSALVSGLIQNGE 137
            M  R++VSWN +++G L N     A++ F        ++     +++  L + L Q   
Sbjct: 261 QMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLAL 320

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
             +    ++K G   DG          ++  Y + G +++A  +F  +P +         
Sbjct: 321 ARQLHSCVLKHGFHSDGN-----VMTAIMDAYSKCGELDDAFNIFLLMPGS--------- 366

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEEAS 253
             +N+VSW +MI    +  D+  A  +F +M E +     F+++T+++  I +L  +  +
Sbjct: 367 --QNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHA 424

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
            +             A+++ Y+++GN E AL  FK +  K++V+W++M++      D +G
Sbjct: 425 QIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDG 484

Query: 314 AIKLFIQMQVEGEKPDRHTFSS-ILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALI 371
           A  +FI+M ++G KP+  T SS I + +S    +  G Q H +  K    D + + +AL+
Sbjct: 485 ATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALV 544

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
           TMYAR G+I  ARI+FE  +  +++VSWN+MI G A HG++ EAL+ F+ M +  +    
Sbjct: 545 TMYARKGSIDSARIVFER-QTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDG 603

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
            TF++V+  C HAGLV+EG+Q+F SMV ++ I P +EH++ +VD+  R G+L++ M+LI+
Sbjct: 604 ATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIE 663

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
           GMPF     VW  LLGACRVH NVEL ++AA+ L+ +EP++S  YVLL N+YA  GRW +
Sbjct: 664 GMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKE 723

Query: 552 ANEVRLLMKSNNIKKPTGYSWVDF 575
            +EVR LM S  +KK  G SW+  
Sbjct: 724 RDEVRKLMDSKKVKKEAGCSWIQI 747



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 143/277 (51%), Gaps = 10/277 (3%)

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
            A+V  Y + G +E     F+ MP++N+V+W S++ G    +     + LF +M+ EG  
Sbjct: 139 TALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVW 198

Query: 328 PDRHTFSSILS--MSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEAR 384
           P+  TF+S+LS   S G VD  LG ++H Q V       V + N+LI MY++CG + EA+
Sbjct: 199 PNPFTFTSVLSAVASQGAVD--LGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAK 256

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F +M+  +++VSWN ++ G   +    EAL+LF   R+     +  T+ +V+  CA+ 
Sbjct: 257 AVFRQME-TRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANL 315

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
             +   RQ   S V ++G         +++D   + G L+DA ++   MP   +   W A
Sbjct: 316 KQLALARQ-LHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTA 374

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
           ++G C  + ++ L   AA    ++  +N  P    Y+
Sbjct: 375 MIGGCIQNADIPL---AAALFSRMREDNVKPNEFTYS 408



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 191/454 (42%), Gaps = 85/454 (18%)

Query: 110 AIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG-GEDLVRAYNTLIVG 168
           A +  D MP RD+A+ S+                 +V  G R  G GE L    +    G
Sbjct: 48  ARQALDGMPSRDAAAGSS------------SNPVAIVDYGRRGKGRGEALDHFVDVHRCG 95

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEG--------NVRFKRNIVS-WNSMIMCYAKAGDVV 219
             Q   V    K+   IP   DR  G           F R  V    +++  Y K G V 
Sbjct: 96  RVQGAAVSRVLKVCGLIP---DRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVE 152

Query: 220 SAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTLT------- 266
             R +FE M +R+  +W ++++GY+      +   LF +M      P+P T T       
Sbjct: 153 DGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVA 212

Query: 267 --------------------------WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
                                      N++++ Y++ G +E A   F++M  +++VSWN+
Sbjct: 213 SQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNT 272

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           ++AG   N+    A++LF   +    K  + T+S+++ + + +  L L  Q+H  V K  
Sbjct: 273 LMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHG 332

Query: 361 I-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              D  +  A++  Y++CG + +A  IF  M   +NVVSW AMIGGC  +     A  LF
Sbjct: 333 FHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALF 392

Query: 420 KSMRSFKVLPTYITFISVLSAC-------AHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
             MR   V P   T+ +VL+A         HA +++   QH  S+              +
Sbjct: 393 SRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVGT------------A 440

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           L+    + G  E+A+ + K M    D   W A+L
Sbjct: 441 LLASYSKLGNTEEALSIFK-MIDHKDVVAWSAML 473



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 7/177 (3%)

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKTVI--PDVPINNALITMYARCGAIVEARIIFEEMK 391
           S +L +   I D   G Q+H +  K      +V +  AL+ MY +CG + + R++FE M 
Sbjct: 103 SRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMP 162

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             +NVV+W +++ G       ++ + LF  MR+  V P   TF SVLSA A  G V+ GR
Sbjct: 163 -KRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGR 221

Query: 452 Q-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           + H +S+  ++G    +    SL+++  + G +E+A  + + M    D   W  L+ 
Sbjct: 222 RVHAQSV--KFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETR-DMVSWNTLMA 275


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 196/595 (32%), Positives = 324/595 (54%), Gaps = 39/595 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS-GFLEEAR----YLFDIM 55
           +ISG+ +     +A  +FDEM    +   +V I+  +++  + G L + +    YL    
Sbjct: 215 LISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAG 274

Query: 56  PERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
              D +   +++  Y K+G++EEAL++F+S    NVV WN M+  + Q  D+A + + F 
Sbjct: 275 MSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFY 334

Query: 116 RMPGR----DSASLSALVSGLIQNGEL---DEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           RM       +  +   ++      GE+   ++   + +K G + D     +     LI  
Sbjct: 335 RMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSD-----MYVSGVLIDM 389

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y + G +++A+++ D I             ++++VSW SMI  Y +      A E F++M
Sbjct: 390 YSKYGWLDKAQRILDMIE------------EKDVVSWTSMIAGYVQHEFCKEALETFKEM 437

Query: 229 ----LERDTFSWNTMISGYIHVLDMEEASNL----FVKMPHPDTLTWNAMVSGYAQIGNL 280
               +  D     + IS    +  + + S +    +V     D   WN +V  YA+ G  
Sbjct: 438 QACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGIS 497

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           + A   F+ +  K  ++WN +I+G   +  YE A+K+F++M   G K +  TF S +S S
Sbjct: 498 KEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISAS 557

Query: 341 SGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           + + D+  G QIH  V KT    +  I+NALI++Y +CG+I +A++ F EM   +N VSW
Sbjct: 558 ANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTK-RNEVSW 616

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N +I  C+ HG   EAL+LF  M+   + P+ +TF+ VL+AC+H GLVEEG  +FKSM N
Sbjct: 617 NTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSN 676

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
           E+GI PR +H+A +VDI+GR G+L+ A   ++ MP   D  VW  LL AC+VH N+E+ +
Sbjct: 677 EHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGE 736

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            AA+ L+++EP +S  YVLL N YA  G+W   +++R +MK   ++K  G SW++
Sbjct: 737 FAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIE 791



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 157/569 (27%), Positives = 262/569 (46%), Gaps = 82/569 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K+  + +AR++F+E+  RD VSW  ++SGY     +G  EEA  L+  M     
Sbjct: 83  LIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQ---NGLGEEAVRLYREMHRSGV 139

Query: 61  V---------------------------------------TWNTVISGYAKTGEMEEALR 81
           V                                         N +IS Y +      A R
Sbjct: 140 VPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADR 199

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGE 137
           +F  M   + V++N +ISG  Q G    A+  FD M       DS ++++L++     G+
Sbjct: 200 VFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGD 259

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           L +  ++   L+K G   D   +      +L+  Y + G +EEA ++FD    + DR   
Sbjct: 260 LRKGKQLHSYLLKAGMSLDYIME-----GSLLDLYVKSGDIEEALQIFD----SGDR--- 307

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDM- 249
                 N+V WN M++ Y +  D+  + +IF +ML      + F++  M+    H  ++ 
Sbjct: 308 -----TNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIG 362

Query: 250 --EEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
             E+  +L +K     D      ++  Y++ G L+ A      + +K++VSW SMIAG  
Sbjct: 363 LGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYV 422

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-TKTVIPDVP 365
            ++  + A++ F +MQ  G  PD    +S +S  +GI  +H G QIH  V       DV 
Sbjct: 423 QHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVS 482

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           I N L+ +YARCG   EA   FE ++  K  ++WN +I G A  G   EAL++F  M   
Sbjct: 483 IWNGLVYLYARCGISKEAFSSFEAIE-HKEGITWNGLISGFAQSGLYEEALKVFMKMDQA 541

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
                  TF+S +SA A+   +++G+Q H + +   Y  E  I +  +L+ + G+ G +E
Sbjct: 542 GAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISN--ALISLYGKCGSIE 599

Query: 485 DA-MDLIKGMPFEPDKAVWGALLGACRVH 512
           DA MD  +    + ++  W  ++  C  H
Sbjct: 600 DAKMDFFEMT--KRNEVSWNTIITCCSQH 626



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 163/372 (43%), Gaps = 51/372 (13%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------ 259
           N +I  YAK G V  AR +FE++  RD  SW  ++SGY      EEA  L+ +M      
Sbjct: 81  NLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVV 140

Query: 260 PHP---------------------------------DTLTWNAMVSGYAQIGNLELALDF 286
           P P                                 +T   NA++S Y +  +  LA   
Sbjct: 141 PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRV 200

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F  M   + V++N++I+G       + A+ +F +MQ+ G  PD  T +S+L+  S + DL
Sbjct: 201 FCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDL 260

Query: 347 HLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             G Q+H  + K  +  D  +  +L+ +Y + G I EA  IF+      NVV WN M+  
Sbjct: 261 RKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGD-RTNVVLWNLMLVA 319

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
                   ++ ++F  M +  V P   T+  +L  C H G +  G Q   S+  + G + 
Sbjct: 320 YGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQ-IHSLTIKNGFQS 378

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
            +     L+D+  ++G L+ A  ++  M  E D   W +++     H   E  + A E  
Sbjct: 379 DMYVSGVLIDMYSKYGWLDKAQRILD-MIEEKDVVSWTSMIAGYVQH---EFCKEALETF 434

Query: 526 MKVE-----PEN 532
            +++     P+N
Sbjct: 435 KEMQACGIWPDN 446



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           I N LI +YA+ G +  AR +FEE+ +  N VSW A++ G A +G   EA+ L++ M   
Sbjct: 79  IGNLLIDLYAKKGFVRRARRVFEELSVRDN-VSWVAVLSGYAQNGLGEEAVRLYREMHRS 137

Query: 426 KVLPTYITFISVLSACAHAGLVEEGR 451
            V+PT     S+LSAC    L + GR
Sbjct: 138 GVVPTPYVLSSILSACTKTELFQLGR 163


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 183/510 (35%), Positives = 282/510 (55%), Gaps = 25/510 (4%)

Query: 72  KTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---DSASLSAL 128
           K  ++  A  +F+ +  R+++ WN +I  +++N    + I  F  +      D+ +L  +
Sbjct: 59  KINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLPDNFTLPCV 118

Query: 129 VSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           + G  + G + E  ++    +K G   D     V    +L+  Y + G ++ ARK+FD +
Sbjct: 119 IKGCARLGVVQEGKQIHGLALKIGFGSD-----VFVQGSLVNMYSKCGEIDCARKVFDGM 173

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
                         +++V WNS+I  YA+ G++  A ++FE+M ERD FSW  ++ G   
Sbjct: 174 ------------IDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSK 221

Query: 246 VLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
              +E A  LF +MP  + ++WNAM++GY + G+ + AL+ F +MP  +LV+WN MIAG 
Sbjct: 222 CGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGY 281

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DV 364
           E N  +  A+K+F  M   G +P   T  S+LS  SG+  L  G  IH  + K     D 
Sbjct: 282 ELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDG 341

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            +  +LI MYA+CG I  A  +F  ++  K V  W A+I G   HG A  AL LF  M  
Sbjct: 342 ILGTSLIEMYAKCGCIESALTVFRAIQK-KKVGHWTAIIVGLGIHGMANHALALFLEMCK 400

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
             + P  I FI VL+AC HAGLV++GRQ+F  M+NEY IEP +EH+  LVDI+ R G LE
Sbjct: 401 TGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLE 460

Query: 485 DAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
           +A + I+ MP  P+K +W +LLG  R H  +++ + AA+ +++V PE    Y+LL NMYA
Sbjct: 461 EAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYA 520

Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             G W+  + VR +M     +K  G S V+
Sbjct: 521 ASGMWEKVSHVREMMYKRGFRKDPGCSSVE 550



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 138/554 (24%), Positives = 235/554 (42%), Gaps = 136/554 (24%)

Query: 7   KRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS------------------------ 42
           K  ++  AR +FD + +R ++ WN +I  Y+ ++ S                        
Sbjct: 59  KINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLPDNFTLPCV 118

Query: 43  -------GFLEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNV 91
                  G ++E + +  +  +     D     ++++ Y+K GE++ A ++F+ M  ++V
Sbjct: 119 IKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDV 178

Query: 92  VSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSR 151
           V WN++I G+ + G++  A++ F+ MP RD+ S + LV GL                 S+
Sbjct: 179 VLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGL-----------------SK 221

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
           C                    G+VE ARKLFD++P             RN+VSWN+MI  
Sbjct: 222 C--------------------GKVESARKLFDQMPC------------RNLVSWNAMING 249

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTL 265
           Y K+GD  SA E+F QM   D  +WN MI+GY       +A  +F  M      P   TL
Sbjct: 250 YMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATL 309

Query: 266 T----------------W-----------------NAMVSGYAQIGNLELALDFFKRMPQ 292
                            W                  +++  YA+ G +E AL  F+ + +
Sbjct: 310 VSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQK 369

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGM 350
           K +  W ++I G   +     A+ LF++M   G KP+   F  +L+    +G+VD   G 
Sbjct: 370 KKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVD--DGR 427

Query: 351 QIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           Q   M+     + P +     L+ +  R G + EA+   E M +  N V W +++GG  +
Sbjct: 428 QYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRN 487

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE---- 464
           HG     +  + + R  +V P  I    +LS    A  + E   H + M+ + G      
Sbjct: 488 HGKID--IGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPG 545

Query: 465 -PRIEHFASLVDIV 477
              +EH  +L + +
Sbjct: 546 CSSVEHKGTLHEFI 559



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 156/298 (52%), Gaps = 25/298 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y K  E+  ARK+FD M  +DVV WN +I GY      G ++ A  LF+ MPERD 
Sbjct: 153 LVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARC---GEIDIALQLFEEMPERDA 209

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +W  ++ G +K G++E A +LF+ MP RN+VSWNAMI+G++++GD  +A+E F +MP  
Sbjct: 210 FSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIW 269

Query: 121 DSASLSALVSGLIQNGELDEAAR---VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           D  + + +++G   NG+  +A +   +++K GSR      LV   +  + G    G+   
Sbjct: 270 DLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSR-PSHATLVSVLSA-VSGLAVLGK--- 324

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
            R +   +  N         F+ + +   S+I  YAK G + SA  +F  + ++    W 
Sbjct: 325 GRWIHSYMEKN--------GFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWT 376

Query: 238 TMISGY-IHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRM 290
            +I G  IH +    A  LF++M      P+ + +  +++     G ++    +F  M
Sbjct: 377 AIIVGLGIHGM-ANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMM 433



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 121/300 (40%), Gaps = 54/300 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------ISSR-- 40
           MI+GY+K  +   A +LF +MP  D+V+WN+MI+GY                  + SR  
Sbjct: 246 MINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPS 305

Query: 41  ------------GSGFLEEARYLFDIMP----ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                       G   L + R++   M     E D +   ++I  YAK G +E AL +F 
Sbjct: 306 HATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFR 365

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI---QNGELDEA 141
           ++  + V  W A+I G   +G   +A+  F  M        + +  G++    +  L + 
Sbjct: 366 AIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDD 425

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            R            E  +  Y  L+    + G +EEA+   + +P++            N
Sbjct: 426 GRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPIS-----------PN 474

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
            V W S++      G +    +I E   +R        I  YI + +M  AS ++ K+ H
Sbjct: 475 KVIWMSLLGGSRNHGKI----DIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSH 530


>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 216/632 (34%), Positives = 328/632 (51%), Gaps = 79/632 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSGFLEE 47
           +++GY K +E+  A  LFDEMP RD VSWN MI+G+I+              R  GF E 
Sbjct: 39  ILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGF-EL 97

Query: 48  ARYLFDIMPE------------------------RDCVTWNTVISGYAKTGEMEEALRLF 83
            RY F  M +                         +    + ++  YAK  ++E+A   F
Sbjct: 98  DRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSF 157

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD 139
            S+   N VSWNAMI+G+ Q GD   A    D M       D  + + L+  L+ + +  
Sbjct: 158 LSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLP-LLDDADFC 216

Query: 140 EAARVLVKCGSRCDGGEDLVRAY-NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
                L   G     G +LV    N LI  Y + G +++A+++FD               
Sbjct: 217 NLTSQLH--GKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAG----------- 263

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIF----EQMLERDTFSWNTMISGYIHVLDMEEASN 254
            R++V+WNS++  Y        A ++     E   E D +S+ ++IS   +    E  SN
Sbjct: 264 IRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFN----ENISN 319

Query: 255 -------LFVKMPHPDTL-TWNAMVSGY--AQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
                  L +K     ++   NA++S Y  +  G+++ AL  F+ +  K+ VSWNS++ G
Sbjct: 320 NGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTG 379

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PD 363
                  E A+K F+ M+      D ++FS++L   S +    LG QIH +  K  +  +
Sbjct: 380 LSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESN 439

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNV-VSWNAMIGGCASHGFATEALELFKSM 422
             ++++LI MY++CG I +AR  FEE    KN  ++WNA++ G A HG    AL+LF  M
Sbjct: 440 EFVSSSLIFMYSKCGIIEDARRSFEEAS--KNSSITWNALMFGYAQHGQCNVALDLFFLM 497

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
              KV   +ITF++VL+AC+H GLVE+G +  + M ++YG+ PR+EH+A  VD+ GR GR
Sbjct: 498 EXKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGR 557

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           LE+A  LI+ MPF+PD  VW   LGACR   N+ELA   A  L+++EPE    YVLL NM
Sbjct: 558 LEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNM 617

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           Y ++ RWD+  +V+ LMK   +KK  G+SW++
Sbjct: 618 YGNLMRWDEKAKVKRLMKERGVKKVPGWSWIE 649



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 118/260 (45%), Gaps = 9/260 (3%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D  T N +++GY +   L  A   F  MP ++ VSWN+MIAG     + E +  +   M+
Sbjct: 32  DVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMR 91

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIV 381
             G + DR+TF S+L   +     HLG Q+H ++ K     +V   +AL+ MYA+C  + 
Sbjct: 92  SCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLE 151

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS--FKVLP-TYITFISVL 438
           +A + F  +    N VSWNAMI G A  G    A  L   M     KV   TY   + +L
Sbjct: 152 DAYLSFLSIS-KHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLL 210

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
                  L  +        + ++G+E       +L+    + G L+DA  +        D
Sbjct: 211 DDADFCNLTSQ----LHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRD 266

Query: 499 KAVWGALLGACRVHNNVELA 518
              W +LL A  + +  +LA
Sbjct: 267 LVTWNSLLAAYLLRSQEDLA 286



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 3/135 (2%)

Query: 353 HQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H +  K   I DV   N ++  Y +C  +  A ++F+EM  +++ VSWN MI G  + G 
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMP-MRDSVSWNTMIAGHINCGN 79

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
              + ++ + MRS        TF S+L   A AG+   G+Q   S++ + G    +   +
Sbjct: 80  LEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQ-VHSIIIKMGYAENVYAGS 138

Query: 472 SLVDIVGRHGRLEDA 486
           +L+D+  +  +LEDA
Sbjct: 139 ALLDMYAKCEKLEDA 153


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 205/622 (32%), Positives = 323/622 (51%), Gaps = 70/622 (11%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------IMP-- 56
           Y K   +  +R+LF  + +R+VVSWN + S Y+ S   G   EA  LF       IMP  
Sbjct: 127 YAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCG---EAVGLFKEMVRSGIMPNE 183

Query: 57  -------------------------------ERDCVTWNTVISGYAKTGEMEEALRLFNS 85
                                          + D  + N ++  Y+K GE+E A+ +F  
Sbjct: 184 FSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQD 243

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA----SLSALVSGLIQNGELDEA 141
           +   +VVSWNA+I+G + +     A+   D M G  +     +LS+ +      G   E 
Sbjct: 244 IAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMG-FKEL 302

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            R L     + D   DL  A   L+  Y +   +++AR+ +D +P            K++
Sbjct: 303 GRQLHSSLIKMDAHSDLFAAVG-LVDMYSKCEMMDDARRAYDSMP------------KKD 349

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP- 260
           I++WN++I  Y++ GD + A  +F +M   D     T +S  +  +   +A  +  ++  
Sbjct: 350 IIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHT 409

Query: 261 -------HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
                  + D    N+++  Y +  +++ A   F+    ++LV++ SMI       D E 
Sbjct: 410 ISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEE 469

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALIT 372
           A+KL++QMQ    KPD    SS+L+  + +     G Q+H    K   + D+  +N+L+ 
Sbjct: 470 ALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVN 529

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MYA+CG+I +A   F E+   + +VSW+AMIGG A HG   EAL LF  M    V P +I
Sbjct: 530 MYAKCGSIEDADRAFSEIPN-RGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHI 588

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           T +SVL AC HAGLV EG+Q+F+ M   +GI+P  EH+A ++D++GR G+L +A++L+  
Sbjct: 589 TLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNS 648

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
           +PFE D  VWGALLGA R+H N+EL Q AA+ L  +EPE S  +VLL N+YA  G W++ 
Sbjct: 649 IPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENV 708

Query: 553 NEVRLLMKSNNIKKPTGYSWVD 574
            +VR  MK + +KK  G SW++
Sbjct: 709 AKVRKFMKDSKVKKEPGMSWIE 730



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 147/592 (24%), Positives = 253/592 (42%), Gaps = 124/592 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +++ Y K R    ARKL DE  + DVVSW+ ++SGY+ +   GF+EEA  +F+ M     
Sbjct: 22  LVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN---GFVEEALLVFNEMCLLGV 78

Query: 57  -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                                              E D    NT++  YAK G ++++ R
Sbjct: 79  KCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRR 138

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR------MPGRDSASLSALVSGLIQN 135
           LF  +  RNVVSWNA+ S ++Q+     A+  F        MP   S S+       +Q 
Sbjct: 139 LFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQE 198

Query: 136 GELDEAAR-VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP-------- 186
           G+L      +++K G   D       + N L+  Y + G +E A  +F  I         
Sbjct: 199 GDLGRKIHGLMLKMGLDLDQ-----FSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWN 253

Query: 187 --------VNCD----------RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
                    +C+          +G G    + N+ + +S +   A  G     R++   +
Sbjct: 254 AIIAGCVLHDCNDLALMLLDEMKGSGT---RPNMFTLSSALKACAAMGFKELGRQLHSSL 310

Query: 229 LERDT----FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
           ++ D     F+   ++  Y     M++A   +  MP  D + WNA++SGY+Q G      
Sbjct: 311 IKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCG------ 364

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
                                    D+  A+ LF +M  E    ++ T S++L   + + 
Sbjct: 365 -------------------------DHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQ 399

Query: 345 DLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
            + +  QIH +  K+ +  D  + N+L+  Y +C  I EA  IFEE +  +++V++ +MI
Sbjct: 400 AIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEE-RTWEDLVAYTSMI 458

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYG 462
              + +G   EAL+L+  M+   + P      S+L+ACA+    E+G+Q H  ++  ++G
Sbjct: 459 TAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAI--KFG 516

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
               I    SLV++  + G +EDA      +P       W A++G    H +
Sbjct: 517 FMCDIFASNSLVNMYAKCGSIEDADRAFSEIP-NRGIVSWSAMIGGYAQHGH 567



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 144/578 (24%), Positives = 257/578 (44%), Gaps = 98/578 (16%)

Query: 24  RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
           RD    N +++ Y   R  G+   AR L D   E D V+W++++SGY + G +EEAL +F
Sbjct: 14  RDPSLRNHLVTLYSKCRRFGY---ARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVF 70

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
           N M    V          L+   +   +    ++ G       A+V+G   +G +     
Sbjct: 71  NEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGM------AVVTGFESDGFV----- 119

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
                              NTL+V Y + G ++++R+LF  I             +RN+V
Sbjct: 120 ------------------ANTLVVMYAKCGLLDDSRRLFGGI------------VERNVV 149

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME---EASNLF 256
           SWN++  CY ++     A  +F++M+      + FS + +++    + + +   +   L 
Sbjct: 150 SWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLM 209

Query: 257 VKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           +KM    D  + NA+V  Y++ G +E A+  F+ +   ++VSWN++IAGC  +   + A+
Sbjct: 210 LKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLAL 269

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMY 374
            L  +M+  G +P+  T SS L   + +    LG Q+H  + K     D+     L+ MY
Sbjct: 270 MLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMY 329

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           ++C  + +AR  ++ M   K++++WNA+I G +  G   +A+ LF  M S  +     T 
Sbjct: 330 SKCEMMDDARRAYDSMP-KKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTL 388

Query: 435 ISVLSACAHAGLVEEGRQ-H--------------FKSMVNEYGIEPRIEH---------- 469
            +VL + A    ++  +Q H                S+++ YG    I+           
Sbjct: 389 STVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTW 448

Query: 470 -----FASLVDIVGRHGRLEDAMDLIKGMP---FEPDKAVWGALLGACRVHNNVELA-QV 520
                + S++    ++G  E+A+ L   M     +PD  +  +LL AC   +  E   Q+
Sbjct: 449 EDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQL 508

Query: 521 AAEA-----LMKVEPENSTPYVLLYNMYADVGRWDDAN 553
              A     +  +   NS     L NMYA  G  +DA+
Sbjct: 509 HVHAIKFGFMCDIFASNS-----LVNMYAKCGSIEDAD 541


>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 216/632 (34%), Positives = 328/632 (51%), Gaps = 79/632 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSGFLEE 47
           +++GY K +E+  A  LFDEMP RD VSWN MI+G+I+              R  GF E 
Sbjct: 39  ILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGF-EL 97

Query: 48  ARYLFDIMPE------------------------RDCVTWNTVISGYAKTGEMEEALRLF 83
            RY F  M +                         +    + ++  YAK  ++E+A   F
Sbjct: 98  DRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSF 157

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD 139
            S+   N VSWNAMI+G+ Q GD   A    D M       D  + + L+  L+ + +  
Sbjct: 158 LSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLP-LLDDADFC 216

Query: 140 EAARVLVKCGSRCDGGEDLVRAY-NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
                L   G     G +LV    N LI  Y + G +++A+++FD               
Sbjct: 217 NLTSQLH--GKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAG----------- 263

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIF----EQMLERDTFSWNTMISGYIHVLDMEEASN 254
            R++V+WNS++  Y        A ++     E   E D +S+ ++IS   +    E  SN
Sbjct: 264 IRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFN----ENISN 319

Query: 255 -------LFVKMPHPDTL-TWNAMVSGY--AQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
                  L +K     ++   NA++S Y  +  G+++ AL  F+ +  K+ VSWNS++ G
Sbjct: 320 NGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTG 379

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PD 363
                  E A+K F+ M+      D ++FS++L   S +    LG QIH +  K  +  +
Sbjct: 380 LSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESN 439

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNV-VSWNAMIGGCASHGFATEALELFKSM 422
             ++++LI MY++CG I +AR  FEE    KN  ++WNA++ G A HG    AL+LF  M
Sbjct: 440 EFVSSSLIFMYSKCGIIEDARRSFEEAS--KNSSITWNALMFGYAQHGQCNVALDLFFLM 497

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
              KV   +ITF++VL+AC+H GLVE+G +  + M ++YG+ PR+EH+A  VD+ GR GR
Sbjct: 498 EEKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGR 557

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           LE+A  LI+ MPF+PD  VW   LGACR   N+ELA   A  L+++EPE    YVLL NM
Sbjct: 558 LEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNM 617

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           Y ++ RWD+  +V+ LMK   +KK  G+SW++
Sbjct: 618 YGNLMRWDEKAKVKRLMKERGVKKVPGWSWIE 649



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 118/260 (45%), Gaps = 9/260 (3%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D  T N +++GY +   L  A   F  MP ++ VSWN+MIAG     + E +  +   M+
Sbjct: 32  DVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMR 91

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIV 381
             G + DR+TF S+L   +     HLG Q+H ++ K     +V   +AL+ MYA+C  + 
Sbjct: 92  SCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLE 151

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS--FKVLP-TYITFISVL 438
           +A + F  +    N VSWNAMI G A  G    A  L   M     KV   TY   + +L
Sbjct: 152 DAYLSFLSIS-KHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLL 210

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
                  L  +        + ++G+E       +L+    + G L+DA  +        D
Sbjct: 211 DDADFCNLTSQ----LHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRD 266

Query: 499 KAVWGALLGACRVHNNVELA 518
              W +LL A  + +  +LA
Sbjct: 267 LVTWNSLLAAYLLRSQEDLA 286



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 3/135 (2%)

Query: 353 HQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H +  K   I DV   N ++  Y +C  +  A ++F+EM  +++ VSWN MI G  + G 
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMP-MRDSVSWNTMIAGHINCGN 79

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
              + ++ + MRS        TF S+L   A AG+   G+Q   S++ + G    +   +
Sbjct: 80  LEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQ-VHSIIIKMGYAENVYAGS 138

Query: 472 SLVDIVGRHGRLEDA 486
           +L+D+  +  +LEDA
Sbjct: 139 ALLDMYAKCEKLEDA 153


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 201/626 (32%), Positives = 332/626 (53%), Gaps = 71/626 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ER 58
           +I  Y K  E+  AR+LFDE+ + D ++   M+SGY +S   G +  AR +F+  P   R
Sbjct: 55  LIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCAS---GDITLARGVFEKAPVCMR 111

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNV----VSWNAMISGF------------- 101
           D V +N +I+G++   +   A+ LF  M          ++ ++++G              
Sbjct: 112 DTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQF 171

Query: 102 ----LQNG-----DVANAI------------------EFFDRMPGRDSASLSALVSGLIQ 134
               L++G      V+NA+                  + FD +  +D  S + +++G ++
Sbjct: 172 HAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVK 231

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVR--AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           NG  D    +L       +G +D ++  AYN +I GY  RG  +EA ++  ++  +    
Sbjct: 232 NGYFDLGEELL-------EGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSS---- 280

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW---NTMISGYIHVLDM 249
                 + +  ++ S+I   A AG +   +++   +L R+ FS+   N+++S Y      
Sbjct: 281 ----GIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKF 336

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           +EA  +F KMP  D ++WNA++SGY   G++  A   FK M +KN++SW  MI+G   N 
Sbjct: 337 DEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENG 396

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINN 368
             E  +KLF  M+ EG +P  + FS  +   + +     G Q H Q++       +   N
Sbjct: 397 FGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGN 456

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           ALITMYA+CG + EAR +F  M  L +V SWNA+I     HG   EA+++++ M    + 
Sbjct: 457 ALITMYAKCGVVEEARQVFRTMPCLDSV-SWNALIAALGQHGHGAEAVDVYEEMLKKGIR 515

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P  IT ++VL+AC+HAGLV++GR++F SM   Y I P  +H+A L+D++ R G+  DA  
Sbjct: 516 PDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAES 575

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           +I+ +PF+P   +W ALL  CRVH N+EL  +AA+ L  + PE+   Y+LL NM+A  G+
Sbjct: 576 VIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQ 635

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVD 574
           W++   VR LM+   +KK    SW++
Sbjct: 636 WEEVARVRKLMRDRGVKKEVACSWIE 661



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 228/493 (46%), Gaps = 37/493 (7%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--GRD 121
           N +I  Y K+ E+  A +LF+ +   + ++   M+SG+  +GD+  A   F++ P   RD
Sbjct: 53  NRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRD 112

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           +   +A+++G   N   D  + + + C  + +G +     + +++ G       E+    
Sbjct: 113 TVMYNAMITGFSHNN--DGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQ 170

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD----VVSAREIFEQMLERDTFSWN 237
           F    +    G G +      VS N+++  Y+K       + SAR++F+++LE+D  SW 
Sbjct: 171 FHAAALK--SGAGYI----TSVS-NALVSVYSKCASSPSLLHSARKVFDEILEKDERSWT 223

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNL- 295
           TM++GY+     +    L   M     L  +NAM+SGY   G  + AL+  +RM    + 
Sbjct: 224 TMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIE 283

Query: 296 ---VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM-- 350
               ++ S+I  C T      A  L +  QV      R  FS      + +V L+     
Sbjct: 284 LDEFTYPSVIRACAT------AGLLQLGKQVHAYVLRREDFS--FHFDNSLVSLYYKCGK 335

Query: 351 --QIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
             +   +  K    D+   NAL++ Y   G I EA++IF+EMK  KN++SW  MI G A 
Sbjct: 336 FDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMK-EKNILSWMIMISGLAE 394

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           +GF  E L+LF  M+     P    F   + +CA  G    G+Q+   ++ + G +  + 
Sbjct: 395 NGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL-KIGFDSSLS 453

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH-NNVELAQVAAEALMK 527
              +L+ +  + G +E+A  + + MP   D   W AL+ A   H +  E   V  E L K
Sbjct: 454 AGNALITMYAKCGVVEEARQVFRTMPC-LDSVSWNALIAALGQHGHGAEAVDVYEEMLKK 512

Query: 528 -VEPENSTPYVLL 539
            + P+  T   +L
Sbjct: 513 GIRPDRITLLTVL 525


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 187/512 (36%), Positives = 281/512 (54%), Gaps = 50/512 (9%)

Query: 68  SGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSA 127
           S  A +G M  A +LF  +   +   WN MI G  Q+    NAI  + +M          
Sbjct: 55  SSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQME--------- 105

Query: 128 LVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV 187
             +G ++  +      VL  C   C            + +G+G  GRV            
Sbjct: 106 --NGCVRPDKF-TFPFVLKACTRLC-----------WVKMGFGVHGRVFR---------- 141

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL 247
                   + F+ N    N++I  +A  GD+  AR +F+   +RD  +W+ + +GY    
Sbjct: 142 --------LGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRG 193

Query: 248 DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG--- 304
           ++  A  LF +MP  D ++WN M++GYA+ G +E A   F  +P++++V+WN+MIAG   
Sbjct: 194 ELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVL 253

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD- 363
           C +N+    A+++F +M+  GE PD  T  S+LS  + + DL  G +IH  +++    D 
Sbjct: 254 CGSNQQ---ALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDL 310

Query: 364 -VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
            V + NALI MYA+CG+IV A  +F+ M+  K+V +WN+++GG A HG A +++ LF  M
Sbjct: 311 SVLLGNALIDMYAKCGSIVRALEVFQGMRE-KDVSTWNSVLGGLAFHGHAEKSIHLFTEM 369

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
           R  K+ P  ITF+ VL AC+HAG VEEGRQ+F  M +EY IEP I H+  +VD++GR G 
Sbjct: 370 RKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGL 429

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           L +A D I  M  EP+  VW  LLGACR+H NVEL + A   L+K+  + S  YVLL N+
Sbjct: 430 LNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNI 489

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           YA  G WD   +VR LM  + ++K  G S ++
Sbjct: 490 YASRGEWDGVEKVRKLMDDSGVRKEAGCSLIE 521



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 192/423 (45%), Gaps = 48/423 (11%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRG------------SGFLEEARYLFDIMPER 58
           MA A +LF  + + D   WN MI G   S              +G +   ++ F  +  +
Sbjct: 63  MAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL-K 121

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
            C     V  G+   G      R+F      N    N +I      GD+A A   FD   
Sbjct: 122 ACTRLCWVKMGFGVHG------RVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSA 175

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
            RD  + SAL +G  + GEL  A ++  +   +     DLV ++N +I GY +RG +E A
Sbjct: 176 KRDVVAWSALTAGYARRGELGVARQLFDEMPVK-----DLV-SWNVMITGYAKRGEMESA 229

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTF 234
           RKLFD++P            KR++V+WN+MI  Y   G    A E+FE+M       D  
Sbjct: 230 RKLFDEVP------------KRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEV 277

Query: 235 SWNTMISGYIHVLDMEEASNLFV---KMPHPD--TLTWNAMVSGYAQIGNLELALDFFKR 289
           +  +++S    + D++    +     +M   D   L  NA++  YA+ G++  AL+ F+ 
Sbjct: 278 TMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQG 337

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
           M +K++ +WNS++ G   +   E +I LF +M+    +PD  TF  +L   S    +  G
Sbjct: 338 MREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEG 397

Query: 350 MQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
            Q   ++     + P++     ++ +  R G + EA    + MK+  N + W  ++G C 
Sbjct: 398 RQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACR 457

Query: 408 SHG 410
            HG
Sbjct: 458 IHG 460



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 158/318 (49%), Gaps = 32/318 (10%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++A AR LFD   +RDVV+W+ + +GY + RG   L  AR LFD MP +D V+WN +I+G
Sbjct: 163 DLAVARALFDGSAKRDVVAWSALTAGY-ARRGE--LGVARQLFDEMPVKDLVSWNVMITG 219

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASL 125
           YAK GEME A +LF+ +P R+VV+WNAMI+G++  G    A+E F+ M       D  ++
Sbjct: 220 YAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTM 279

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDK 184
            +L+S     G+LD   R  + C     G  DL V   N LI  Y + G +  A ++F  
Sbjct: 280 LSLLSACTDLGDLDAGQR--IHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQG 337

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMI 240
           +             ++++ +WNS++   A  G    +  +F +M    +  D  ++  ++
Sbjct: 338 MR------------EKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVL 385

Query: 241 SGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKN 294
               H   +EE    F  M       P+   +  MV    + G L  A DF   M  + N
Sbjct: 386 VACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPN 445

Query: 295 LVSWNSMIAGCETNKDYE 312
            + W +++  C  + + E
Sbjct: 446 AIVWRTLLGACRIHGNVE 463



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 151/291 (51%), Gaps = 25/291 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----SSRGSGFLEEARYLFDIMP 56
           MI+GY KR EM  ARKLFDE+P+RDVV+WN MI+GY+    + +     EE R + ++  
Sbjct: 216 MITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPD 275

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRL---FNSMPARN--VVSWNAMISGFLQNGDVANAI 111
           E   VT  +++S     G+++   R+    + M  R+  V+  NA+I  + + G +  A+
Sbjct: 276 E---VTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRAL 332

Query: 112 EFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
           E F  M  +D ++ ++++ GL  +G  +++  +  +        +++   +  ++V    
Sbjct: 333 EVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEIT--FVGVLVACSH 390

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LE 230
            GRVEE R+ FD +     R E N+  + NI  +  M+    +AG +  A +  + M +E
Sbjct: 391 AGRVEEGRQYFDLM-----RDEYNI--EPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIE 443

Query: 231 RDTFSWNTMISG-YIH-VLDMEEASNL-FVKMPHPDTLTWNAMVSGYAQIG 278
            +   W T++    IH  +++   +N+  +KM H ++  +  + + YA  G
Sbjct: 444 PNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRG 494


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 187/512 (36%), Positives = 281/512 (54%), Gaps = 50/512 (9%)

Query: 68  SGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSA 127
           S  A +G M  A +LF  +   +   WN MI G  Q+    NAI  + +M          
Sbjct: 20  SSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQME--------- 70

Query: 128 LVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV 187
             +G ++  +      VL  C   C            + +G+G  GRV            
Sbjct: 71  --NGCVRPDKF-TFPFVLKACTRLC-----------WVKMGFGVHGRVFR---------- 106

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL 247
                   + F+ N    N++I  +A  GD+  AR +F+   +RD  +W+ + +GY    
Sbjct: 107 --------LGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRG 158

Query: 248 DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG--- 304
           ++  A  LF +MP  D ++WN M++GYA+ G +E A   F  +P++++V+WN+MIAG   
Sbjct: 159 ELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVL 218

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD- 363
           C +N+    A+++F +M+  GE PD  T  S+LS  + + DL  G +IH  +++    D 
Sbjct: 219 CGSNQQ---ALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDL 275

Query: 364 -VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
            V + NALI MYA+CG+IV A  +F+ M+  K+V +WN+++GG A HG A +++ LF  M
Sbjct: 276 SVLLGNALIDMYAKCGSIVRALEVFQGMRE-KDVSTWNSVLGGLAFHGHAEKSIHLFTEM 334

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
           R  K+ P  ITF+ VL AC+HAG VEEGRQ+F  M +EY IEP I H+  +VD++GR G 
Sbjct: 335 RKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGL 394

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           L +A D I  M  EP+  VW  LLGACR+H NVEL + A   L+K+  + S  YVLL N+
Sbjct: 395 LNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNI 454

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           YA  G WD   +VR LM  + ++K  G S ++
Sbjct: 455 YASRGEWDGVEKVRKLMDDSGVRKEAGCSLIE 486



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 192/423 (45%), Gaps = 48/423 (11%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRG------------SGFLEEARYLFDIMPER 58
           MA A +LF  + + D   WN MI G   S              +G +   ++ F  +  +
Sbjct: 28  MAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL-K 86

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
            C     V  G+   G      R+F      N    N +I      GD+A A   FD   
Sbjct: 87  ACTRLCWVKMGFGVHG------RVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSA 140

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
            RD  + SAL +G  + GEL  A ++  +   +     DLV ++N +I GY +RG +E A
Sbjct: 141 KRDVVAWSALTAGYARRGELGVARQLFDEMPVK-----DLV-SWNVMITGYAKRGEMESA 194

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTF 234
           RKLFD++P            KR++V+WN+MI  Y   G    A E+FE+M       D  
Sbjct: 195 RKLFDEVP------------KRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEV 242

Query: 235 SWNTMISGYIHVLDMEEASNLFV---KMPHPD--TLTWNAMVSGYAQIGNLELALDFFKR 289
           +  +++S    + D++    +     +M   D   L  NA++  YA+ G++  AL+ F+ 
Sbjct: 243 TMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQG 302

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
           M +K++ +WNS++ G   +   E +I LF +M+    +PD  TF  +L   S    +  G
Sbjct: 303 MREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEG 362

Query: 350 MQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
            Q   ++     + P++     ++ +  R G + EA    + MK+  N + W  ++G C 
Sbjct: 363 RQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACR 422

Query: 408 SHG 410
            HG
Sbjct: 423 IHG 425



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 158/318 (49%), Gaps = 32/318 (10%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++A AR LFD   +RDVV+W+ + +GY + RG   L  AR LFD MP +D V+WN +I+G
Sbjct: 128 DLAVARALFDGSAKRDVVAWSALTAGY-ARRGE--LGVARQLFDEMPVKDLVSWNVMITG 184

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASL 125
           YAK GEME A +LF+ +P R+VV+WNAMI+G++  G    A+E F+ M       D  ++
Sbjct: 185 YAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTM 244

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDK 184
            +L+S     G+LD   R  + C     G  DL V   N LI  Y + G +  A ++F  
Sbjct: 245 LSLLSACTDLGDLDAGQR--IHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQG 302

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMI 240
           +             ++++ +WNS++   A  G    +  +F +M    +  D  ++  ++
Sbjct: 303 MR------------EKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVL 350

Query: 241 SGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKN 294
               H   +EE    F  M       P+   +  MV    + G L  A DF   M  + N
Sbjct: 351 VACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPN 410

Query: 295 LVSWNSMIAGCETNKDYE 312
            + W +++  C  + + E
Sbjct: 411 AIVWRTLLGACRIHGNVE 428



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 151/291 (51%), Gaps = 25/291 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----SSRGSGFLEEARYLFDIMP 56
           MI+GY KR EM  ARKLFDE+P+RDVV+WN MI+GY+    + +     EE R + ++  
Sbjct: 181 MITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPD 240

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRL---FNSMPARN--VVSWNAMISGFLQNGDVANAI 111
           E   VT  +++S     G+++   R+    + M  R+  V+  NA+I  + + G +  A+
Sbjct: 241 E---VTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRAL 297

Query: 112 EFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
           E F  M  +D ++ ++++ GL  +G  +++  +  +        +++   +  ++V    
Sbjct: 298 EVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEIT--FVGVLVACSH 355

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LE 230
            GRVEE R+ FD +     R E N+  + NI  +  M+    +AG +  A +  + M +E
Sbjct: 356 AGRVEEGRQYFDLM-----RDEYNI--EPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIE 408

Query: 231 RDTFSWNTMISG-YIH-VLDMEEASNL-FVKMPHPDTLTWNAMVSGYAQIG 278
            +   W T++    IH  +++   +N+  +KM H ++  +  + + YA  G
Sbjct: 409 PNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRG 459


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 186/526 (35%), Positives = 297/526 (56%), Gaps = 26/526 (4%)

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           T  +++  Y + G + EA ++F+ M  R+V +WNAM+SG  +N   A A+  F RM G  
Sbjct: 105 TSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEG 164

Query: 122 SASLSALVSGLIQNGEL--DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            A  +  VS ++    L  D+   +++   +   G +  +   N LI  YG+ G +EEA+
Sbjct: 165 VAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQ 224

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFS 235
            +F  +              R++V+WNS+I    + G   +A ++F+ M    +  D  +
Sbjct: 225 CVFHGMEC------------RDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLT 272

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
             ++ S      D   A +L   +        D +  NA+V  YA++ N+E A   F  M
Sbjct: 273 LVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSM 332

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV-EGEKPDRHTFSSILSMSSGIVDLHLG 349
           P ++ VSWN++I G   N     A++ +  MQ  EG K  + TF S+L   S +  L  G
Sbjct: 333 PVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQG 392

Query: 350 MQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           M++H +  K  +  DV +   LI +YA+CG + EA ++FE+M   ++   WNA+I G   
Sbjct: 393 MRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPR-RSTGPWNAIISGLGV 451

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           HG   EAL LF  M+   + P ++TF+S+L+AC+HAGLV++GR  F  M   Y I P  +
Sbjct: 452 HGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAK 511

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528
           H+A + D++GR G+L++A + I+ MP +PD AVWGALLGACR+H NVE+ +VA++ L ++
Sbjct: 512 HYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFEL 571

Query: 529 EPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +PEN   YVL+ NMYA VG+WD  +EVR L++  N++K  G+S ++
Sbjct: 572 DPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIE 617



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 213/461 (46%), Gaps = 64/461 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSR-------------GSGFLEE 47
           ++  Y++   +++A K+FDEM +RDV +WN M+SG   +              G G   +
Sbjct: 109 LVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGD 168

Query: 48  ARYLFDIMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
              +  ++P                       +++    N +I  Y K G +EEA  +F+
Sbjct: 169 TVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFH 228

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            M  R++V+WN++ISG  Q G  A A++ F  M G     D  +L +L S + Q G+   
Sbjct: 229 GMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRS 288

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A  +      R    +D++ A N ++  Y +   +E A+++FD +PV            +
Sbjct: 289 AKSLHCYVMRRGWDVDDII-AGNAIVDMYAKLSNIEAAQRMFDSMPV------------Q 335

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-----SWNTMISGYIHVLDMEEA--- 252
           + VSWN++I  Y + G    A E +  M + +       ++ +++  Y H+  +++    
Sbjct: 336 DSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRM 395

Query: 253 SNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
             L +K+  + D      ++  YA+ G L  A+  F++MP+++   WN++I+G   +   
Sbjct: 396 HALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHG 455

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINNA 369
             A+ LF +MQ EG KPD  TF S+L+  S  G+VD          VT  ++P       
Sbjct: 456 AEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYAC 515

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +  M  R G + EA    + M +  +   W A++G C  HG
Sbjct: 516 MADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHG 556



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 194/406 (47%), Gaps = 34/406 (8%)

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
           LI+    + +A  L  C  R       V    +L+  Y + GR+ EA K+FD++      
Sbjct: 76  LIRAAPSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMS----- 130

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVL 247
                  +R++ +WN+M+    +      A  +F +M+      DT + ++++   + + 
Sbjct: 131 -------ERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLG 183

Query: 248 DMEEASNLFV-KMPH---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
           D   A  + V  + H    +    NA++  Y ++G LE A   F  M  ++LV+WNS+I+
Sbjct: 184 DQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIIS 243

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV--I 361
           GCE       A+K+F  M+  G  PD  T  S+ S  +   D      +H  V +    +
Sbjct: 244 GCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDV 303

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
            D+   NA++ MYA+   I  A+ +F+ M  +++ VSWN +I G   +G A EA+E +  
Sbjct: 304 DDIIAGNAIVDMYAKLSNIEAAQRMFDSMP-VQDSVSWNTLITGYMQNGLANEAVERYGH 362

Query: 422 MRSFKVLPTYI-TFISVLSACAHAGLVEEG-RQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           M+  + L     TF+SVL A +H G +++G R H  S+  + G+   +     L+D+  +
Sbjct: 363 MQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSI--KIGLNVDVYVGTCLIDLYAK 420

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
            G+L +AM L + MP       W A++    VH +       AEAL
Sbjct: 421 CGKLAEAMLLFEKMP-RRSTGPWNAIISGLGVHGH------GAEAL 459



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 151/367 (41%), Gaps = 72/367 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGFLEE 47
           +I  Y K   + +A+ +F  M  RD+V+WN +ISG             +   RGSG   +
Sbjct: 210 LIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPD 269

Query: 48  ARYLFDIMPE------------------------RDCVTWNTVISGYAKTGEMEEALRLF 83
              L  +                            D +  N ++  YAK   +E A R+F
Sbjct: 270 VLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMF 329

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-----SASLSALVSGLIQNGEL 138
           +SMP ++ VSWN +I+G++QNG    A+E +  M   +       +  +++      G L
Sbjct: 330 DSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGAL 389

Query: 139 DEAAR---VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
            +  R   + +K G   D     V     LI  Y + G++ EA  LF+K+P         
Sbjct: 390 QQGMRMHALSIKIGLNVD-----VYVGTCLIDLYAKCGKLAEAMLLFEKMP--------- 435

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEE 251
              +R+   WN++I      G    A  +F +M    ++ D  ++ ++++   H   +++
Sbjct: 436 ---RRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQ 492

Query: 252 ASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGC 305
             + F  M       P    +  M     + G L+ A +F + MP K +   W +++  C
Sbjct: 493 GRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGAC 552

Query: 306 ETNKDYE 312
             + + E
Sbjct: 553 RIHGNVE 559


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 172/432 (39%), Positives = 259/432 (59%), Gaps = 19/432 (4%)

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
           +VK G  CD         N+LI  Y     +  A++LF            ++   R++VS
Sbjct: 26  VVKSGFECDS-----YIVNSLIHLYANGKDLGAAKQLF------------SLCSDRDVVS 68

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDT 264
           WN+MI  Y K G++   R +F++M+ RD  SWNT+I+GY  V  ++EA  LF +MP  + 
Sbjct: 69  WNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLFDEMPERNL 128

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
           ++WN+M+SG+ + GN+E A   F  MP +++VSWNSM+A          A+ LF QM+  
Sbjct: 129 VSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAV 188

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEA 383
           G KP   T  S+LS  + +  L  G+ +H  +    I  +  +  AL+ MYA+CG I  A
Sbjct: 189 GVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLA 248

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
             +F  M+  K+V++WN +I G A HG   EA +LFK M+   V P  ITF+++LSAC+H
Sbjct: 249 TQVFNAMES-KDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSH 307

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           AG+V+EG++    M + YGIEP++EH+  ++D++ R G LE+AM+LI  MP EP+ +  G
Sbjct: 308 AGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALG 367

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
           ALLG CR+H N EL ++  + L+ ++P +S  Y+LL N+YA   +WDDA +VR LMK N 
Sbjct: 368 ALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNG 427

Query: 564 IKKPTGYSWVDF 575
           I K  G S ++ 
Sbjct: 428 ISKVPGVSVIEL 439



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 199/405 (49%), Gaps = 33/405 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y   +++  A++LF     RDVVSWN MI GY+     G +   R +FD M  RD 
Sbjct: 41  LIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKR---GEMGHTRMVFDRMVCRDV 97

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++WNT+I+GYA  G+++EA RLF+ MP RN+VSWN+M+SGF++ G+V  A   F  MP R
Sbjct: 98  ISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCR 157

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  S +++++   Q G+ +EA  +  +   R  G +       +L+      G +++   
Sbjct: 158 DVVSWNSMLACYAQCGKPNEALALFDQ--MRAVGVKPTEATVVSLLSACAHLGALDKGLH 215

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           L   I  N        R + N +   +++  YAK G +  A ++F  M  +D  +WNT+I
Sbjct: 216 LHTYINDN--------RIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTII 267

Query: 241 SGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP----- 291
           +G      ++EA  LF +M      P+ +T+ AM+S  +  G ++        M      
Sbjct: 268 AGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGI 327

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           +  +  ++ +I         E A++L   M +E   P+     ++L    G   +H   +
Sbjct: 328 EPKVEHYDCVIDLLARAGLLEEAMELIGTMPME---PNPSALGALL----GGCRIHGNFE 380

Query: 352 IHQMVTKTVIPDVPINNA----LITMYARCGAIVEARIIFEEMKL 392
           + +MV K +I   P ++     L  +YA      +AR +   MK+
Sbjct: 381 LGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKV 425



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 195/366 (53%), Gaps = 32/366 (8%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D    N++I  YA   ++  A +LF+    R+VVSWNAMI G+++ G++ +    FDR
Sbjct: 32  ECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDR 91

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           M  RD  S + +++G    G++DEA R+  +   R     +LV ++N+++ G+ + G VE
Sbjct: 92  MVCRDVISWNTIINGYAIVGKIDEAKRLFDEMPER-----NLV-SWNSMLSGFVKCGNVE 145

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERD 232
           EA  LF ++P             R++VSWNSM+ CYA+ G    A  +F+QM    ++  
Sbjct: 146 EAFGLFSEMPC------------RDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPT 193

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFK 288
             +  +++S   H+  +++  +L   +       +++   A+V  YA+ G + LA   F 
Sbjct: 194 EATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFN 253

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDL 346
            M  K++++WN++IAG   +   + A +LF +M+    +P+  TF ++LS  S  G+VD 
Sbjct: 254 AMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVD- 312

Query: 347 HLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
             G ++   ++ +  + P V   + +I + AR G + EA  +   M +  N  +  A++G
Sbjct: 313 -EGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLG 371

Query: 405 GCASHG 410
           GC  HG
Sbjct: 372 GCRIHG 377


>gi|302760949|ref|XP_002963897.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
 gi|300169165|gb|EFJ35768.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
          Length = 714

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 187/597 (31%), Positives = 297/597 (49%), Gaps = 58/597 (9%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGY 70
           +A A   FD +      S NVM++ Y  +   G+L+ A   FD  P +D V+WN ++SGY
Sbjct: 8   VADAVICFDSIRNPTAFSHNVMVAAYAQN---GYLDLAARTFDRTPNKDVVSWNGMLSGY 64

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
           A+ G   +A   F+ MP +N VS+N +IS F + G++A A   F+ M  RD+A+ + L++
Sbjct: 65  ARYGSFRDAKLFFDEMPYKNTVSYNTLISAFARQGNLAEARNLFNSMKIRDAATWNVLIA 124

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           G  Q      A  +  +   R       V  +NT+I GY Q G ++ A +LF  +P    
Sbjct: 125 GYTQRCLCTHAREIFDRAPVRN------VVTWNTMIGGYAQAGHLDNATELFGLMP---- 174

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDME 250
                   + N V WN++I    +   +  A E+F+ +  RD  SW  MI G +H  D+ 
Sbjct: 175 --------QWNEVCWNALISGMGRNRRLPDALELFQALPFRDMVSWIAMIQGCVHSGDLH 226

Query: 251 EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN---------------- 294
            A +LF +MP  D + W A+V+ +A  G L+ A D F  +P K+                
Sbjct: 227 RAWDLFKRMPLTDVVIWTAIVTAFAHSGFLQEARDLFDAIPIKDAAAVNAMIAAYGLHGE 286

Query: 295 ----------------LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
                           ++SWN+++A    N     A+ +F  M +EG  PD  +F S L 
Sbjct: 287 IARAKDLFDSAGDLRDVISWNALLAAFSQNGHARQALGIFAGMDLEGIHPDGISFVSALD 346

Query: 339 MSSGIVDLHLGMQIHQMV----TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
             + +  L  G  +H+ +       +  +  +  AL+  YA+CG + EAR +F+ M    
Sbjct: 347 ACTILTALREGKLLHEELLLASQGEIFVEASLATALVNFYAKCGRLDEARSLFDAMAFCD 406

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
            ++  N+M+G  A  G A EA +LF+      + P  +TF+S++SAC+HAGL++ G ++F
Sbjct: 407 AIL-LNSMLGAYAQSGRAGEAADLFQRAILSGIHPDAVTFVSMVSACSHAGLLDLGHRYF 465

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
            S+V ++ + P   H+  +VD++ R G L D  DL+  MPF+P+   W +LL  CR H +
Sbjct: 466 LSLVGDFALAPHAAHYTCMVDLLARTGHLMDGEDLLDAMPFQPEYTAWKSLLAGCRTHGD 525

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           V      A       P  S+PYVLL  +Y   G+  D   VR  M +  ++KP G S
Sbjct: 526 VGRGARLARRATNANPVCSSPYVLLSRLYDAAGKHGDGISVRKAMDARRLRKPAGLS 582



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 219/445 (49%), Gaps = 36/445 (8%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           Y + G + +A+  F+S+      S N M++ + QNG +  A   FDR P +D  S + ++
Sbjct: 2   YGRCGCVADAVICFDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTPNKDVVSWNGML 61

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           SG  + G   +A     +   +         +YNTLI  + ++G + EAR LF+ + +  
Sbjct: 62  SGYARYGSFRDAKLFFDEMPYKN------TVSYNTLISAFARQGNLAEARNLFNSMKI-- 113

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
                     R+  +WN +I  Y +      AREIF++   R+  +WNTMI GY     +
Sbjct: 114 ----------RDAATWNVLIAGYTQRCLCTHAREIFDRAPVRNVVTWNTMIGGYAQAGHL 163

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           + A+ LF  MP  + + WNA++SG  +   L  AL+ F+ +P +++VSW +MI GC  + 
Sbjct: 164 DNATELFGLMPQWNEVCWNALISGMGRNRRLPDALELFQALPFRDMVSWIAMIQGCVHSG 223

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHLGMQIHQMVTKTVIPDVPIN 367
           D   A  LF +M +     D   +++I++    SG +      +   +     I D    
Sbjct: 224 DLHRAWDLFKRMPLT----DVVIWTAIVTAFAHSGFL-----QEARDLFDAIPIKDAAAV 274

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           NA+I  Y   G I  A+ +F+    L++V+SWNA++   + +G A +AL +F  M    +
Sbjct: 275 NAMIAAYGLHGEIARAKDLFDSAGDLRDVISWNALLAAFSQNGHARQALGIFAGMDLEGI 334

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMV----NEYGIEPRIEHFASLVDIVGRHGRL 483
            P  I+F+S L AC     + EG+   + ++     E  +E  +    +LV+   + GRL
Sbjct: 335 HPDGISFVSALDACTILTALREGKLLHEELLLASQGEIFVEASLA--TALVNFYAKCGRL 392

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGA 508
           ++A  L   M F  D  +  ++LGA
Sbjct: 393 DEARSLFDAMAF-CDAILLNSMLGA 416



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 168/411 (40%), Gaps = 81/411 (19%)

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMV 271
           Y + G V  A   F+ +     FS N M++ Y     ++ A+  F + P+ D ++WN M+
Sbjct: 2   YGRCGCVADAVICFDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTPNKDVVSWNGML 61

Query: 272 SGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
           SGYA+ G+   A  FF  MP KN VS+N++I+      +   A  LF  M++     D  
Sbjct: 62  SGYARYGSFRDAKLFFDEMPYKNTVSYNTLISAFARQGNLAEARNLFNSMKIR----DAA 117

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
           T++ ++   +G     L     ++  +  + +V   N +I  YA+ G +  A  +F  M 
Sbjct: 118 TWNVLI---AGYTQRCLCTHAREIFDRAPVRNVVTWNTMIGGYAQAGHLDNATELFGLMP 174

Query: 392 L------------------------------LKNVVSWNAMIGGCASHGFATEALELFKS 421
                                           +++VSW AMI GC   G    A +LFK 
Sbjct: 175 QWNEVCWNALISGMGRNRRLPDALELFQALPFRDMVSWIAMIQGCVHSGDLHRAWDLFKR 234

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM-----------VNEYGIEPRIEHF 470
           M     L   + + ++++A AH+G ++E R  F ++           +  YG+   I   
Sbjct: 235 M----PLTDVVIWTAIVTAFAHSGFLQEARDLFDAIPIKDAAAVNAMIAAYGLHGEIARA 290

Query: 471 ASLVDIVG----------------RHGRLEDAMDLIKGMPFE---PDKAVWGALLGACRV 511
             L D  G                ++G    A+ +  GM  E   PD   + + L AC +
Sbjct: 291 KDLFDSAGDLRDVISWNALLAAFSQNGHARQALGIFAGMDLEGIHPDGISFVSALDACTI 350

Query: 512 HNNVELAQVAAEALMK-------VEPENSTPYVLLYNMYADVGRWDDANEV 555
              +   ++  E L+        VE   +T  V   N YA  GR D+A  +
Sbjct: 351 LTALREGKLLHEELLLASQGEIFVEASLATALV---NFYAKCGRLDEARSL 398



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 18/193 (9%)

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-- 430
           MY RCG + +A I F+ ++      S N M+   A +G+    L+L  + R+F   P   
Sbjct: 1   MYGRCGCVADAVICFDSIR-NPTAFSHNVMVAAYAQNGY----LDL--AARTFDRTPNKD 53

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            +++  +LS  A  G   + +  F  M  +  +      + +L+    R G L +A +L 
Sbjct: 54  VVSWNGMLSGYARYGSFRDAKLFFDEMPYKNTVS-----YNTLISAFARQGNLAEARNLF 108

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
             M    D A W  L+     +    L   A E   +    N   +  +   YA  G  D
Sbjct: 109 NSMKIR-DAATWNVLIAG---YTQRCLCTHAREIFDRAPVRNVVTWNTMIGGYAQAGHLD 164

Query: 551 DANEVRLLMKSNN 563
           +A E+  LM   N
Sbjct: 165 NATELFGLMPQWN 177


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 192/594 (32%), Positives = 311/594 (52%), Gaps = 65/594 (10%)

Query: 30   NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
            N ++S Y      G L +AR +FD +P  +  ++N ++S +A+ G   +A  LF+++P  
Sbjct: 799  NTLVSAYARL---GRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDP 855

Query: 90   NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
            +  S+NA+I+   Q+   A+A+ F   M   D    +   +  +     ++ +R  V+  
Sbjct: 856  DQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVH 915

Query: 150  SRCDGGEDLVRAY--NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
            +           Y  + L+  Y +    EEAR++F+ +P            +RNIVSWNS
Sbjct: 916  ALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMP------------ERNIVSWNS 963

Query: 208  MIMCYAKAGDVVSA-----------------------------------REIFEQMLERD 232
            +I CY + G V  A                                   R++  ++++ D
Sbjct: 964  LITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSD 1023

Query: 233  TFS-----WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
             F       N ++  Y        A  +F +M     ++  ++++GYA+  N+E A   F
Sbjct: 1024 RFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVF 1083

Query: 288  KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
             +M +KN+++WN +IA    N + E A++LF++++ E   P  +T+ ++L+    + DL 
Sbjct: 1084 SQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQ 1143

Query: 348  LGMQIHQMVTKTVI-------PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            LG Q H  V K           DV + N+L+ MY + G+I +   +FE M    NV SWN
Sbjct: 1144 LGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNV-SWN 1202

Query: 401  AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
            AMI G A +G A +AL LF+ M   K  P  +T I VLSAC H+GLVEEGR++F+SM  +
Sbjct: 1203 AMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTED 1262

Query: 461  YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
            +GI P  +H+  ++D++GR G L++  +LIK M  EPD  +W +LLG+CR+H NVE+ + 
Sbjct: 1263 HGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEW 1322

Query: 521  AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            AA  L +++P NS PYVLL NMYA++G+W D   VR  MK   + K  G SW++
Sbjct: 1323 AAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIE 1376



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 172/616 (27%), Positives = 273/616 (44%), Gaps = 113/616 (18%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMIS-----GYISSRGSGF--------------------- 44
           +A AR+LFD MP RD  SWN +I+     G+ S   S F                     
Sbjct: 101 VADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSC 160

Query: 45  ------LEEARYLFDIMPERD----CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
                 L  AR L   + +RD     +    ++  Y     + +A R F+ +   N +SW
Sbjct: 161 CAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISW 220

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI----QNGELDEAARVLVKCGS 150
           N ++  +   G    A++ F RM       L   VS  +     N  L+E          
Sbjct: 221 NVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEG--------- 271

Query: 151 RC-------DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
           RC        G E  V   ++++  Y + G ++ A+ LF+  P+            +++V
Sbjct: 272 RCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPM------------KDMV 319

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP- 262
              S++   A  G +  A+ +FE M ER+  SWN M++GYI  +D+  A  LF +M    
Sbjct: 320 MSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQET 379

Query: 263 ---DTLTW-----------------------------------NAMVSGYAQIGNLELA- 283
              D +T                                    NA+V  Y++ G L  A 
Sbjct: 380 REFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAE 439

Query: 284 -LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
            L  F+   +++  SWNS+I+G E +   E A+    +MQ E   P++ TFSS L+  + 
Sbjct: 440 RLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSE-VTPNQSTFSSALAACAN 498

Query: 343 IVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           I  L  GMQIH  M+ K    D  + + LI MY +C     +  IFE  +  ++V+ WN+
Sbjct: 499 IFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEA-RPSRDVILWNS 557

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI GCA  G     L+LF  M+   +    +TF+  L +C   G V  GR +F  M++E 
Sbjct: 558 MIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMDE- 616

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
            I PRIEH+  +++++G+HG + +  D ++ MPFEP  A+W  +   CR + N +L + A
Sbjct: 617 SIIPRIEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERA 676

Query: 522 AEALMKVEPENSTPYV 537
           A+ +    P     +V
Sbjct: 677 AKCINDSNPLTPVQFV 692



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 140/516 (27%), Positives = 229/516 (44%), Gaps = 101/516 (19%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G + +AR LFD+MP RD  +WN +I+  ++ G   EAL LF++M +  +   +A ++  L
Sbjct: 99  GSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVL 158

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
                                                  A  L  CG+R   G    R +
Sbjct: 159 SC------------------------------------CAECLDLCGARQLHGHIAKRDF 182

Query: 163 NT-LIVG------YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
            + +I+G      YG    + +AR+ FD I             + N +SWN ++  Y  A
Sbjct: 183 QSNVILGTALVDVYGNCFLLADARRAFDDI------------LEPNAISWNVIVRRYHLA 230

Query: 216 GDVVSAREIFEQMLERDTFSWNTMIS-------------------------GYIH----- 245
           G    A ++F +ML          +S                         GY H     
Sbjct: 231 GMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVR 290

Query: 246 --VLD-------MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
             V+D       M+ A +LF   P  D +   ++VSG A  G +  A   F+ M ++NLV
Sbjct: 291 SSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLV 350

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SWN+M+ G   + D  GA+ LF QM+ E  + D  T  S+LS  +GI+D+  G ++H   
Sbjct: 351 SWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFA 410

Query: 357 TKTVIPDVPI-NNALITMYARCGAIVEA-RIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
            K      PI  NAL+ MY++CG +  A R++  EM   ++  SWN++I G   H  +  
Sbjct: 411 IKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEA 470

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE-YGIEPRIEHFASL 473
           AL     M+S +V P   TF S L+ACA+  L+++G Q    M+ + Y I+  +   + L
Sbjct: 471 ALYALTKMQS-EVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILR--SVL 527

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           +D+  +  + + ++ + +  P   D  +W +++  C
Sbjct: 528 IDMYCKCRQFDYSIRIFEARP-SRDVILWNSMIFGC 562



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 177/350 (50%), Gaps = 8/350 (2%)

Query: 232  DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
            +TF  NT++S Y  +  + +A  +F ++PHP+T ++NA++S +A++G    A   F  +P
Sbjct: 794  ETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIP 853

Query: 292  QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
              +  S+N++IA    +     A+     M  +    + ++F+S LS  +   D   G+Q
Sbjct: 854  DPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQ 913

Query: 352  IHQMVTKTV-IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            +H +V+K+    DV I +AL+ MYA+C    EAR +FE M   +N+VSWN++I     +G
Sbjct: 914  VHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMP-ERNIVSWNSLITCYEQNG 972

Query: 411  FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
               EAL LF SM     +P  +T  SV+SACA      EGRQ    +V        +   
Sbjct: 973  PVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLS 1032

Query: 471  ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
             +LVD+  + GR   A  +   M      +    + G  R   NVE AQ+    +++   
Sbjct: 1033 NALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYAR-SANVEDAQMVFSQMVE--- 1088

Query: 531  ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD-FSPCG 579
            +N   + +L   YA  G  ++A  + + +K  ++  PT Y++ +  + CG
Sbjct: 1089 KNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESV-WPTHYTYGNVLNACG 1137



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 175/414 (42%), Gaps = 50/414 (12%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y K   M  A+ LF+  P +D+V    ++SG  S    G + +A+ +F+ M ER+ V+WN
Sbjct: 297 YAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLAS---CGRIADAKRVFEGMKERNLVSWN 353

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
            +++GY ++ ++  AL LF  M  +    ++A+  G                       S
Sbjct: 354 AMLTGYIRSMDLTGALLLFQQM-RQETREFDAITLG-----------------------S 389

Query: 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK 184
           + +  +G++  G+ +E     +KCG        +++  N L+  Y + G +  A +L   
Sbjct: 390 VLSACTGILDIGKGEEVHAFAIKCGFF---SSPILK--NALVRMYSKCGCLRSAERLL-- 442

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE-----RDTFSWNTM 239
                      +  +R+  SWNS+I  Y +     +A     +M       + TFS    
Sbjct: 443 --------LFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSEVTPNQSTFSSALA 494

Query: 240 ISGYIHVLD--MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
               I +L   M+  + +  K    D +  + ++  Y +    + ++  F+  P ++++ 
Sbjct: 495 ACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVIL 554

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MV 356
           WNSMI GC  +   E  + LF +MQ +G K D  TF   L        + LG      M+
Sbjct: 555 WNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMM 614

Query: 357 TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            +++IP +     +I +  + G +VE     E M        W  +   C  +G
Sbjct: 615 DESIIPRIEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYG 668



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 3/234 (1%)

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
           T  +N  +   A  G++  A + F  MP ++  SWN++I           A+ LF  M  
Sbjct: 85  TFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNS 144

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVE 382
            G +P   T +S+LS  +  +DL    Q+H  + K     +V +  AL+ +Y  C  + +
Sbjct: 145 LGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLAD 204

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           AR  F+++ L  N +SWN ++      G    A+++F  M S  V P   T    + AC 
Sbjct: 205 ARRAFDDI-LEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACR 263

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
               +EEGR    + V  +G E  +   +S+VD+  + G ++ A  L    P +
Sbjct: 264 DNNALEEGRC-IHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMK 316



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 142/320 (44%), Gaps = 48/320 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           ++SG      +A A+++F+ M +R++VSWN M++GYI S     L  A  LF  M     
Sbjct: 324 IVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMD---LTGALLLFQQMRQETR 380

Query: 57  ERDCVTWNTVIS---GYAKTGEMEE----ALRL-FNSMPARNVVSWNAMISGFLQNGDVA 108
           E D +T  +V+S   G    G+ EE    A++  F S P    +  NA++  + + G + 
Sbjct: 381 EFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSP----ILKNALVRMYSKCGCLR 436

Query: 109 NA--IEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGED-----LVRA 161
           +A  +  F+    RDS S ++L+SG  ++   + A   L K  S     +      L   
Sbjct: 437 SAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSEVTPNQSTFSSALAAC 496

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
            N  ++  G +      RK ++                 + +  + +I  Y K      +
Sbjct: 497 ANIFLLKQGMQIHAYMIRKGYEI----------------DDILRSVLIDMYCKCRQFDYS 540

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTW-NAMVSGYAQ 276
             IFE    RD   WN+MI G  +    E   +LF +M       D++T+  A+VS  ++
Sbjct: 541 IRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISE 600

Query: 277 IGNLELALDFFKRMPQKNLV 296
            G++ L   +F  M  ++++
Sbjct: 601 -GHVRLGRSYFTLMMDESII 619


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 191/624 (30%), Positives = 333/624 (53%), Gaps = 68/624 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMI-----SGY------ISSR--------- 40
           +I  Y +  ++ KARK+F+EMP RDVVSWN +I     +GY      I  R         
Sbjct: 215 LIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPD 274

Query: 41  ------------GSGFLEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEALRLFN 84
                       G G +EE   +  ++ +    +D +  N ++S Y K   + +  R+F+
Sbjct: 275 SYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFD 334

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---DSASLSALVSGLIQNGELDEA 141
            M  R+ VSWN MI G+ Q G    +I+ F  M  +   D  ++++++      G+L+  
Sbjct: 335 KMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFG 394

Query: 142 ARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
             V   ++  G  CD       A N LI  Y + G +  ++++F  +             
Sbjct: 395 KYVHDYMITSGYECD-----TTASNILINMYAKCGNLLASQEVFSGMKC----------- 438

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQM---LERDTFSWNTMISGYIHVLDMEEASNL 255
            ++ VSWNSMI  Y + G    A ++F+ M   ++ D+ ++  ++S    + D+     L
Sbjct: 439 -KDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKEL 497

Query: 256 FVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
              +     + + +  N +V  YA+ G +  +L  F+ M  +++++WN++IA C  ++D 
Sbjct: 498 HCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDC 557

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNAL 370
              +++  +M+ EG  PD  T  SIL + S +     G +IH  + K  +  DVP+ N L
Sbjct: 558 NLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVL 617

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           I MY++CG++  +  +F+ MK  K+VV+W A+I  C  +G   +A+  F  M +  ++P 
Sbjct: 618 IEMYSKCGSLRNSFQVFKLMKT-KDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPD 676

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
           ++ F++++ AC+H+GLVEEG  +F  M  +Y IEPRIEH+A +VD++ R   L+ A D I
Sbjct: 677 HVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFI 736

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
             MP +PD ++WGALL ACR+  + E+AQ  +E ++++ P+++  YVL+ N+YA +G+WD
Sbjct: 737 LSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWD 796

Query: 551 DANEVRLLMKSNNIKKPTGYSWVD 574
               +R  +K+  +KK  G SW++
Sbjct: 797 QVRSIRKSIKARGLKKDPGCSWME 820



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 144/561 (25%), Positives = 246/561 (43%), Gaps = 101/561 (18%)

Query: 56  PERDCVTWNTVISGYAKTGEMEEALRLFN------------SMPA--------------- 88
           P  +   WN++I      G   EAL L++            + P+               
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 89  ------------RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG 136
                        ++   NA+I  + +  D+  A + F+ MP RD  S ++L+SG   NG
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 254

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA---RKLFDKIPVNCDRGE 193
             +EA  +  +   R  G        ++++   G  G VEE      L +KI +      
Sbjct: 255 YWNEALEIYYR--FRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGI------ 306

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEAS 253
                K++++  N ++  Y K   ++  R IF++M+ RD  SWNTMI GY  V   EE+ 
Sbjct: 307 -----KKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESI 361

Query: 254 NLFVKMPH---PDTLTW-----------------------------------NAMVSGYA 275
            LF++M +   PD LT                                    N +++ YA
Sbjct: 362 KLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYA 421

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           + GNL  + + F  M  K+ VSWNSMI     N  ++ A+KLF  M+ +  KPD  T+  
Sbjct: 422 KCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVM 480

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +LSMS+ + DL LG ++H  + K     ++ ++N L+ MYA+CG + ++  +FE MK  +
Sbjct: 481 LLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMK-AR 539

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           ++++WN +I  C         L +   MR+  V P   T +S+L  C+      +G++  
Sbjct: 540 DIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE-I 598

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
              + + G+E  +     L+++  + G L ++  + K M    D   W AL+ AC ++  
Sbjct: 599 HGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK-TKDVVTWTALISACGMYGE 657

Query: 515 VELAQVAAEALMKVEPENSTP 535
               + A  A  ++E     P
Sbjct: 658 ---GKKAVRAFGEMEAAGIVP 675



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 133/485 (27%), Positives = 232/485 (47%), Gaps = 38/485 (7%)

Query: 66  VISGYAKTGEMEEALRLFN-SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GR 120
           +I+ YA   +   +  +F  + P+ NV  WN++I     NG  + A+  +          
Sbjct: 113 LIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQP 172

Query: 121 DSASLSALVSGLIQNGELD-EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           D+ +  ++++     G LD E A+ +         G DL    N LI  Y +   +++AR
Sbjct: 173 DTYTFPSVINACA--GLLDFEMAKSIHDRVLXMGFGSDLYIG-NALIDMYCRFNDLDKAR 229

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFS 235
           K+F+++P+            R++VSWNS+I  Y   G    A EI+ +     +  D+++
Sbjct: 230 KVFEEMPL------------RDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYT 277

Query: 236 WNTMISGYIHVLDMEEAS---NLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
            ++++     +  +EE      L  K+    D +  N ++S Y +   L      F +M 
Sbjct: 278 MSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMV 337

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
            ++ VSWN+MI G      YE +IKLF++M V   KPD  T +SIL     + DL  G  
Sbjct: 338 LRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKY 396

Query: 352 IHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +H  M+T     D   +N LI MYA+CG ++ ++ +F  MK  K+ VSWN+MI     +G
Sbjct: 397 VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMK-CKDSVSWNSMINVYIQNG 455

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
              EA++LFK M++  V P  +T++ +LS     G +  G++     + + G    I   
Sbjct: 456 SFDEAMKLFKMMKT-DVKPDSVTYVMLLSMSTQLGDLXLGKE-LHCDLAKMGFNSNIVVS 513

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
            +LVD+  + G + D++ + + M    D   W  ++ +C VH+  E   +    + ++  
Sbjct: 514 NTLVDMYAKCGEMGDSLKVFENMK-ARDIITWNTIIASC-VHS--EDCNLGLRMISRMRT 569

Query: 531 ENSTP 535
           E  TP
Sbjct: 570 EGVTP 574



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 183/358 (51%), Gaps = 17/358 (4%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLF 256
           N+  WNS+I      G    A  ++ +     L+ DT+++ ++I+    +LD E A ++ 
Sbjct: 138 NVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 197

Query: 257 VKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
            ++       D    NA++  Y +  +L+ A   F+ MP +++VSWNS+I+G   N  + 
Sbjct: 198 DRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 257

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALI 371
            A++++ + +  G  PD +T SS+L    G+  +  G  IH ++ K  I  DV +NN L+
Sbjct: 258 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLL 317

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-RSFKVLPT 430
           +MY +   +++ R IF++M +L++ VSWN MI G +  G   E+++LF  M   FK  P 
Sbjct: 318 SMYCKFNGLIDGRRIFDKM-VLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFK--PD 374

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            +T  S+L AC H G +E G+     M+   G E        L+++  + G L  + ++ 
Sbjct: 375 LLTITSILQACGHLGDLEFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVF 433

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE-NSTPYVLLYNMYADVG 547
            GM  + D   W +++    + N      +    +MK + + +S  YV+L +M   +G
Sbjct: 434 SGMKCK-DSVSWNSMINV-YIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLG 489


>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 488

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 173/407 (42%), Positives = 244/407 (59%), Gaps = 13/407 (3%)

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           G   +ARK+FD++ V            R++  WN MI+ Y   GDV  A+++F  M +RD
Sbjct: 90  GMASDARKVFDEMCV------------RSVEVWNRMILRYTSTGDVSGAQKLFNTMEDRD 137

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           T SWNTMISGYI V ++ +A  LF KMP  + ++W +M+S YA+ G+L  A  FF +MPQ
Sbjct: 138 TVSWNTMISGYIKVGEVMKARELFEKMPEKNVVSWTSMISAYAKAGDLATARMFFNKMPQ 197

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           +N+VSWNSMI+    + D++ A+ LF QM  EG  PD +TF S+ S  S + +L LG +I
Sbjct: 198 RNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVSVFSACSHLGNLMLGTKI 257

Query: 353 HQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
           H  +       V    ALI MYA+CG I  A  +F ++   K+V  WN M+   A HG A
Sbjct: 258 HYAIDDFSQLGVIAATALIEMYAKCGDINRAFNLFIKIG-KKDVFFWNVMLKSLALHGQA 316

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
            +AL+LF  M+   + P   TF+  L AC+H G+VEEG+  F  M  EY I PRIEHF  
Sbjct: 317 QDALKLFSLMQKQGLKPNDFTFLGALFACSHGGMVEEGQTIFDMMEKEYKIRPRIEHFGC 376

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           +VD++ R+GRLE+A+D++  MPFE D A+WGALLG C++  + + A    E   K+  + 
Sbjct: 377 IVDLLSRNGRLEEALDVVDKMPFEADVAIWGALLGGCKLRGDFKRAGEIVERARKLRSKE 436

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFSPCG 579
              +V   NMYA V +W +A   R  M++ NI K TG S V ++P G
Sbjct: 437 GGIHVSFSNMYASVEQWAEAVNAREKMENENILKKTGQSSVIYAPNG 483



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 162/328 (49%), Gaps = 32/328 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI  Y    +++ A+KLF+ M  RD VSWN MISGYI     G + +AR LF+ MPE++ 
Sbjct: 113 MILRYTSTGDVSGAQKLFNTMEDRDTVSWNTMISGYIKV---GEVMKARELFEKMPEKNV 169

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W ++IS YAK G++  A   FN MP RNVVSWN+MIS ++Q+GD   A++ F++M   
Sbjct: 170 VSWTSMISAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSE 229

Query: 121 ----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               D  +  ++ S     G L    ++          G   V A   LI  Y + G + 
Sbjct: 230 GITPDGYTFVSVFSACSHLGNLMLGTKIHYAIDDFSQLG---VIAATALIEMYAKCGDIN 286

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF----EQMLERD 232
            A  LF KI             K+++  WN M+   A  G    A ++F    +Q L+ +
Sbjct: 287 RAFNLFIKIG------------KKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPN 334

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFF 287
            F++   +    H   +EE   +F  M       P    +  +V   ++ G LE ALD  
Sbjct: 335 DFTFLGALFACSHGGMVEEGQTIFDMMEKEYKIRPRIEHFGCIVDLLSRNGRLEEALDVV 394

Query: 288 KRMP-QKNLVSWNSMIAGCETNKDYEGA 314
            +MP + ++  W +++ GC+   D++ A
Sbjct: 395 DKMPFEADVAIWGALLGGCKLRGDFKRA 422



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 177/365 (48%), Gaps = 27/365 (7%)

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
           A  G   +A ++F+ M  R+V  WN MI  +   GDV+ A + F+ M  RD+ S + ++S
Sbjct: 87  AADGMASDARKVFDEMCVRSVEVWNRMILRYTSTGDVSGAQKLFNTMEDRDTVSWNTMIS 146

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           G I+ GE+ +A  +  K        E  V ++ ++I  Y + G +  AR  F+K+P    
Sbjct: 147 GYIKVGEVMKARELFEKM------PEKNVVSWTSMISAYAKAGDLATARMFFNKMP---- 196

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHV 246
                   +RN+VSWNSMI  Y + GD   A ++F QML      D +++ ++ S   H+
Sbjct: 197 --------QRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVSVFSACSHL 248

Query: 247 LDMEEASNLFVKMPHPDTL---TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
            ++   + +   +     L      A++  YA+ G++  A + F ++ +K++  WN M+ 
Sbjct: 249 GNLMLGTKIHYAIDDFSQLGVIAATALIEMYAKCGDINRAFNLFIKIGKKDVFFWNVMLK 308

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVI 361
               +   + A+KLF  MQ +G KP+  TF   L   S    +  G  I  M+ K   + 
Sbjct: 309 SLALHGQAQDALKLFSLMQKQGLKPNDFTFLGALFACSHGGMVEEGQTIFDMMEKEYKIR 368

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
           P +     ++ + +R G + EA  + ++M    +V  W A++GGC   G    A E+ + 
Sbjct: 369 PRIEHFGCIVDLLSRNGRLEEALDVVDKMPFEADVAIWGALLGGCKLRGDFKRAGEIVER 428

Query: 422 MRSFK 426
            R  +
Sbjct: 429 ARKLR 433



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 112/292 (38%), Gaps = 54/292 (18%)

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           MI G   N     ++ L+  +   G KP   T+  +L   + +     G ++H  + KT 
Sbjct: 1   MIRGYAFNGPAHQSVSLYGDLLQRGLKPHSFTYPFVLKSCADLGWFWDGKKVHCRILKTG 60

Query: 361 IP-DVPINNALITMY-----------ARCGAIVEARIIFEEM------------------ 390
              +  +++AL  +Y           A  G   +AR +F+EM                  
Sbjct: 61  FSLNSSVSDALFHLYVNFSKFTGPKDAADGMASDARKVFDEMCVRSVEVWNRMILRYTST 120

Query: 391 -------KLL-----KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
                  KL      ++ VSWN MI G    G   +A ELF+ M    V    +++ S++
Sbjct: 121 GDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELFEKMPEKNV----VSWTSMI 176

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE-- 496
           SA A AG +   R  F  M      +  +  + S++    +HG  ++A+DL   M  E  
Sbjct: 177 SAYAKAGDLATARMFFNKMP-----QRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGI 231

Query: 497 -PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
            PD   + ++  AC    N+ L      A+             L  MYA  G
Sbjct: 232 TPDGYTFVSVFSACSHLGNLMLGTKIHYAIDDFSQLGVIAATALIEMYAKCG 283


>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial [Vitis vinifera]
          Length = 694

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 208/621 (33%), Positives = 322/621 (51%), Gaps = 68/621 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +IS YVK R ++ AR LFD     D VS N+M++GY+ S   G L+ AR+LF+ MP + C
Sbjct: 93  LISFYVKCRLISNARSLFDTCSVLDPVSCNIMLAGYVKS---GSLDNARHLFEKMPIKGC 149

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNV----VSWNAMISGFLQNGDVANAIEFFDR 116
           V++ T++ G A+     EA+ +F  M    V    V+  ++IS +   G + N       
Sbjct: 150 VSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHAL 209

Query: 117 MPGRDSASLSALVSGLIQNGELDEA---ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
                  +L+ + + L+    +  +   ARVL       +  E  V  +N ++ GY + G
Sbjct: 210 SFKLGLEALNIVATNLVHMYCVCSSLGNARVLFD-----EIPERNVVTWNVMLNGYSKSG 264

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
            V+ AR LF++IP             +++VSW ++I  Y +   +  A  ++  ML    
Sbjct: 265 LVDLARDLFERIPA------------KDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGV 312

Query: 234 ---------------------------------------FSWNTMISGYIHVLDMEEASN 254
                                                  F   T+I  Y    ++  A  
Sbjct: 313 GPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFL 372

Query: 255 LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
            F         +WNA++SG+ + G +E A   F  MP++++ SW+SMI+G   N+  + A
Sbjct: 373 QFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLA 432

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITM 373
           ++LF +M   G +P+  T  S+ S  + +  L  G   H+ +    IP +  +N ALI M
Sbjct: 433 LQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDM 492

Query: 374 YARCGAIVEARIIFEEMK-LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           YA+CG+I  A  +F E++  + +V  WNA+I G A HG A  +L+LF  ++  ++ P  I
Sbjct: 493 YAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSI 552

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TFI VLSAC HAGLV+ G ++FK M N Y IEP I+H+  ++D++GR GRL++A ++I+ 
Sbjct: 553 TFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRK 612

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
           MP + D  +WG LL ACR H NVE+ + AAE L K++  +    VLL N+YAD GRWDDA
Sbjct: 613 MPMKADVVIWGTLLAACRTHGNVEIGERAAENLAKLDISHGAGRVLLSNIYADAGRWDDA 672

Query: 553 NEVRLLMKSNNIKKPTGYSWV 573
             VR  M+S  +KK  G S V
Sbjct: 673 FLVRRAMQSQRMKKSPGCSGV 693



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 126/497 (25%), Positives = 226/497 (45%), Gaps = 65/497 (13%)

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           +F S    N+   N++IS +++   ++NA   FD     D  S + +++G +++G LD A
Sbjct: 78  VFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDTCSVLDPVSCNIMLAGYVKSGSLDNA 137

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +  K   +         +Y T+++G  Q     EA  +F  +     R  G +    N
Sbjct: 138 RHLFEKMPIKG------CVSYTTMVMGLAQNNCWLEAIGVFKDM-----RFAGVIP---N 183

Query: 202 IVSWNSMIMCYAKAGDVVSAREI----FEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
            V+  S+I  Y+  G +++ R +    F+  LE        ++  Y     +  A  LF 
Sbjct: 184 EVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCSSLGNARVLFD 243

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           ++P  + +TWN M++GY++ G ++LA D F+R+P K++VSW ++I G    +    A+++
Sbjct: 244 EIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRM 303

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT------VIPDVPIN---- 367
           +  M   G  P+      ++S     + +  G Q H ++ +T       I    I+    
Sbjct: 304 YRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAA 363

Query: 368 ----------------------NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
                                 NALI+ + R G I +AR +F+EM   ++V SW++MI G
Sbjct: 364 CGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMP-ERDVFSWSSMISG 422

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR-QHFKSMVNEYGIE 464
            + +     AL+LF  M +  V P  IT +SV SA A  G + EGR  H   + N   + 
Sbjct: 423 YSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLN 482

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV-----WGALLGACRVHN--NVEL 517
             +   A+L+D+  + G +  A+ L     +E    V     W A++    +H   NV L
Sbjct: 483 DNLN--AALIDMYAKCGSITIALQLF----YEIQDRVSSVSPWNAIICGLAMHGHANVSL 536

Query: 518 AQVAAEALMKVEPENST 534
              +    ++++P + T
Sbjct: 537 KLFSQLQRVRIKPNSIT 553



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 114/265 (43%), Gaps = 43/265 (16%)

Query: 325 GEKPDRH-----TFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARC- 377
           G K  +H     T  S L   S ++ L  G QIH +V K+ ++ ++ + N+LI+ Y +C 
Sbjct: 42  GNKDTQHSDYELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCR 101

Query: 378 ------------------------------GAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
                                         G++  AR +FE+M  +K  VS+  M+ G A
Sbjct: 102 LISNARSLFDTCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMP-IKGCVSYTTMVMGLA 160

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
            +    EA+ +FK MR   V+P  +T  SV+SA +H G +   R    ++  + G+E   
Sbjct: 161 QNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRM-LHALSFKLGLEALN 219

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
               +LV +      L +A  L   +P E +   W  +L     ++   L  +A +   +
Sbjct: 220 IVATNLVHMYCVCSSLGNARVLFDEIP-ERNVVTWNVMLNG---YSKSGLVDLARDLFER 275

Query: 528 VEPENSTPYVLLYNMYADVGRWDDA 552
           +  ++   +  + + Y  + R  +A
Sbjct: 276 IPAKDVVSWGTIIDGYVQIERLGEA 300


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 224/731 (30%), Positives = 356/731 (48%), Gaps = 157/731 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS------------------ 42
           MI+GY K  +M KA   F+ MP RDVVSWN M+SGY+ +  S                  
Sbjct: 120 MINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFD 179

Query: 43  -----------GFLEEARYLFDIMP-------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                       FLE+      I         + D V  + ++  YAK     E+LR+F 
Sbjct: 180 GRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQ 239

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG--------------RDSASLSAL-V 129
            +P +N VSW+A+I+G +QN  ++ A++FF  M                R  A+LS L +
Sbjct: 240 GIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRL 299

Query: 130 SGLIQNGEL--DEAARVLVKCGS-----RCDGGEDLV-----------RAYNTLIVGYGQ 171
            G +    L  D AA  +V+  +     +CD  +D             ++YN +I GY Q
Sbjct: 300 GGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQ 359

Query: 172 RGRVEEARKLF----------DKIPVN-----CDRGEG------------NVRFKRNIVS 204
                +A  LF          D+I ++     C   +G                  ++  
Sbjct: 360 EEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCV 419

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP---- 260
            N+ I  Y K   +  A  +F++M  RD  SWN +I+ +       E   LFV M     
Sbjct: 420 ANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRI 479

Query: 261 HPDTLTWNAMVSG----------------------------------YAQIGNLELALD- 285
            PD  T+ +++                                    Y++ G +E A   
Sbjct: 480 EPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKI 539

Query: 286 ---FFKR------------MPQKNL----VSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
              FF+R            M  K L    VSWNS+I+G    +  E A  LF +M   G 
Sbjct: 540 HSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGI 599

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARI 385
            PD+ T++++L   + +    LG QIH Q++ K +  DV I + L+ MY++CG + ++R+
Sbjct: 600 TPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRL 659

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +FE+  L ++ V+WNAMI G A HG   EA++LF+ M    + P ++TFIS+L ACAH G
Sbjct: 660 MFEK-SLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMG 718

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           L+++G ++F  M  +YG++P++ H++++VDI+G+ G+++ A++LI+ MPFE D  +W  L
Sbjct: 719 LIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTL 778

Query: 506 LGACRVH-NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           LG C +H NNVE+A+ A  AL++++P++S+ Y LL N+YAD G W+  +++R  M+   +
Sbjct: 779 LGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKL 838

Query: 565 KKPTGYSWVDF 575
           KK  G SWV+ 
Sbjct: 839 KKEPGCSWVEL 849



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 136/473 (28%), Positives = 226/473 (47%), Gaps = 39/473 (8%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N ++  Y +SR       A  +FD MP RD V+WN +I+GY+K+ +M +A   FN MP R
Sbjct: 87  NCLLQVYTNSRD---FVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVR 143

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRM-------PGRDSASLSALVSGLIQNGELDEAA 142
           +VVSWN+M+SG+LQNG+   +IE F  M        GR  A +  + S L       +  
Sbjct: 144 DVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIH 203

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
            ++V+ G   D     V A + L+  Y +  R  E+ ++F  IP            ++N 
Sbjct: 204 GIVVRVGCDTD-----VVAASALLDMYAKGKRFVESLRVFQGIP------------EKNS 246

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH----VLDMEEASNLFVK 258
           VSW+++I    +   +  A + F++M + +     ++ +  +     + ++     L   
Sbjct: 247 VSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAH 306

Query: 259 MPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
                   D +   A +  YA+  N++ A   F      N  S+N+MI G    +    A
Sbjct: 307 ALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKA 366

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITM 373
           + LF ++   G   D  + S +    + +  L  G+QI+ +  K+ +  DV + NA I M
Sbjct: 367 LLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDM 426

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           Y +C A+ EA  +F+EM+  ++ VSWNA+I     +G   E L LF SM   ++ P   T
Sbjct: 427 YGKCQALAEAFRVFDEMR-RRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFT 485

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           F S+L AC   G +  G +   S+V   G+        SL+D+  + G +E+A
Sbjct: 486 FGSILKACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEA 536



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 143/260 (55%), Gaps = 5/260 (1%)

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           TF  N ++  Y +  D   AS +F KMP  D ++WN M++GY++  ++  A  FF  MP 
Sbjct: 83  TFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPV 142

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           +++VSWNSM++G   N +   +I++F+ M  EG + D  TF+ IL + S + D  LGMQI
Sbjct: 143 RDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQI 202

Query: 353 HQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H +V +     DV   +AL+ MYA+    VE+  +F+ +   KN VSW+A+I GC  +  
Sbjct: 203 HGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIP-EKNSVSWSAIIAGCVQNNL 261

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHF 470
            + AL+ FK M+      +   + SVL +CA    +  G Q H  ++ +++  +  +   
Sbjct: 262 LSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVR-- 319

Query: 471 ASLVDIVGRHGRLEDAMDLI 490
            + +D+  +   ++DA  L 
Sbjct: 320 TATLDMYAKCDNMQDAQILF 339


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 176/447 (39%), Positives = 263/447 (58%), Gaps = 33/447 (7%)

Query: 162 YNTLIVGY-------GQRGRV-EEARKLFDKIP----------VNCDRGEGNVR------ 197
           YN L+ GY       G+R R+  +AR LFD+IP          ++C    G+VR      
Sbjct: 46  YNRLLAGYARAARPGGRRDRLLADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLF 105

Query: 198 -----FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
                  RN+ SWN+M+   +++G V  AR +F  M  R++ SWN M+S + H  DM  A
Sbjct: 106 AAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAA 165

Query: 253 SNLFVKMPHPD-TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
              F   P  +  + W AMVSGY   G++E A+ FF+ MP ++LVSWN+++AG   N   
Sbjct: 166 EECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRA 225

Query: 312 EGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNA 369
           E A+ +F  M  + + +P+  T SS+L   S +  L  G Q+HQ  TK  +   V    +
Sbjct: 226 EDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTS 285

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           L++MY +CG +  A  +F EM++ ++V++WNAMI G A HG   EA+ELF+ M+S  V P
Sbjct: 286 LVSMYCKCGDLDGACKLFSEMRI-RDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEP 344

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
            +ITF++VL+AC H G+ + G Q F+ M   YGIE R++H++ +VD++ R G LE A+ L
Sbjct: 345 NWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSL 404

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
           I+ MPF+P  + +G LL A RV+ N+E A+ AA  L++  P+N+  YV L N+YA   +W
Sbjct: 405 IRSMPFQPHPSAYGTLLNASRVYKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQW 464

Query: 550 DDANEVRLLMKSNNIKKPTGYSWVDFS 576
            D + VR  MK N + K  GYSWV+ +
Sbjct: 465 ADVSRVRRWMKDNAVVKTPGYSWVEIN 491



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/324 (32%), Positives = 169/324 (52%), Gaps = 44/324 (13%)

Query: 4   GYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--RDCV 61
           G  + R +A AR LFD +P+ D VS+N ++S + ++   G +  AR LF  MP   R+  
Sbjct: 60  GGRRDRLLADARHLFDRIPRPDAVSYNTLLSCHFAA---GDVRGARDLFAAMPATARNVT 116

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           +WNT++SG +++G + EA  +F +MPARN +SWNAM+S F   GD+  A E F+  P ++
Sbjct: 117 SWNTMLSGLSRSGAVGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKE 176

Query: 122 SASL-SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +A L +A+VSG + +G +++A +       R      LV ++N ++ GY +  R E+A  
Sbjct: 177 NAVLWTAMVSGYMDSGHVEKAMQFFEAMPVR-----SLV-SWNAVVAGYVKNSRAEDALW 230

Query: 181 LFDKIPVNCD------------RGEGNVR---FKRNIVSW-------------NSMIMCY 212
           +F  +  + D             G  N+    F R +  W              S++  Y
Sbjct: 231 VFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMY 290

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWN 268
            K GD+  A ++F +M  RD  +WN MISGY H  D  EA  LF KM      P+ +T+ 
Sbjct: 291 CKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFV 350

Query: 269 AMVSGYAQIGNLELALDFFKRMPQ 292
           A+++     G  +  +  F+RM +
Sbjct: 351 AVLTACIHTGMCDFGMQCFERMQE 374



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 113/427 (26%), Positives = 211/427 (49%), Gaps = 43/427 (10%)

Query: 1   MISGYVKRREMAKARK---LFDEMPQRDVVS-WNVMISGYISSRGSG-----FLEEARYL 51
           + +  ++R ++A A +   +    PQR   + +N +++GY  +   G      L +AR+L
Sbjct: 14  LATAAIRRGDLAGAAEPEAVASTTPQRKTTADYNRLLAGYARAARPGGRRDRLLADARHL 73

Query: 52  FDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP--ARNVVSWNAMISGFLQNGDVAN 109
           FD +P  D V++NT++S +   G++  A  LF +MP  ARNV SWN M+SG  ++G V  
Sbjct: 74  FDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGE 133

Query: 110 AIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
           A   F  MP R+S S +A+VS     G++  A     +C       E+ V  +  ++ GY
Sbjct: 134 ARAVFLAMPARNSISWNAMVSCFAHAGDMCAAE----ECFEDAPDKENAV-LWTAMVSGY 188

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
              G VE+A + F+ +PV            R++VSWN+++  Y K      A  +F+ M+
Sbjct: 189 MDSGHVEKAMQFFEAMPV------------RSLVSWNAVVAGYVKNSRAEDALWVFKTMV 236

Query: 230 E-------RDTFSWNTMISGYIHVLDM-EEASNLFVKMPHPDTLT-WNAMVSGYAQIGNL 280
                     T S   +    +  L    +      K+P    +T   ++VS Y + G+L
Sbjct: 237 RDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDL 296

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS-- 338
           + A   F  M  +++++WN+MI+G   + D   AI+LF +M+ +G +P+  TF ++L+  
Sbjct: 297 DGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTAC 356

Query: 339 MSSGIVDLHLGMQIHQMVTKTVIPDVPINN--ALITMYARCGAIVEARIIFEEMKLLKNV 396
           + +G+ D   GMQ  + + +    +  +++   ++ +  R G++  A  +   M    + 
Sbjct: 357 IHTGMCD--FGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHP 414

Query: 397 VSWNAMI 403
            ++  ++
Sbjct: 415 SAYGTLL 421


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 212/744 (28%), Positives = 348/744 (46%), Gaps = 174/744 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K   M  A K+FD MP RDV+SWN MI GY      GF   A+ LFD MPERD 
Sbjct: 47  LVQFYCKSSNMNYAFKVFDRMPHRDVISWNTMIFGYAEIGNMGF---AQSLFDTMPERDV 103

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPA-------------------------------- 88
           V+WN+++S Y   G   +++ +F  M +                                
Sbjct: 104 VSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCL 163

Query: 89  -------RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                   +VV+ +A++  + +   +  A   F  MP R+    SA+++G +QN    E 
Sbjct: 164 AIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEG 223

Query: 142 -------------------ARVLVKCG--------------------------------- 149
                              A V   C                                  
Sbjct: 224 LKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDM 283

Query: 150 -SRCDGGEDLVRAYNTL-----------IVGYGQRGRVEEARKL----------FDKIPV 187
            ++CD   D  + +NTL           IVGY ++ +  +A ++          FD+I +
Sbjct: 284 YAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISL 343

Query: 188 N-----CDRGEGNVR------------FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
           +     C   +G++                NI   N+++  Y K G +V A  IF+ M  
Sbjct: 344 SGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMER 403

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW------------------- 267
           RD  SWN +I+ +    ++ +  +LFV M      PD  T+                   
Sbjct: 404 RDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEI 463

Query: 268 ----------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
                           +A+V  Y + G L  A     R+ +K  VSWNS+I+G  + K  
Sbjct: 464 HGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQS 523

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNAL 370
           E A + F QM   G  PD  T++++L + + +  + LG QIH  + K  +  DV I + L
Sbjct: 524 ENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTL 583

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           + MY++CG + ++R++FE+    ++ V+W+AMI   A HG   +A++LF+ M+   V P 
Sbjct: 584 VDMYSKCGNMQDSRLMFEKTP-KRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPN 642

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
           +  FISVL ACAH G V++G  +F+ M + YG++P +EH++ +VD++GR  ++ +A+ LI
Sbjct: 643 HTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLI 702

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           + M FE D  +W  LL  C++  NVE+A+ A  +L++++P++S+ YVLL N+YA+VG W 
Sbjct: 703 ESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGMWG 762

Query: 551 DANEVRLLMKSNNIKKPTGYSWVD 574
           +  ++R +MK+  +KK  G SW++
Sbjct: 763 EVAKIRSIMKNCKLKKEPGCSWIE 786



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 152/581 (26%), Positives = 268/581 (46%), Gaps = 65/581 (11%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N ++  Y  S    +   A  +FD MP RD ++WNT+I GYA+ G M  A  LF++MP R
Sbjct: 45  NCLVQFYCKSSNMNY---AFKVFDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPER 101

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDEAARVL 145
           +VVSWN+++S +L NG    +IE F RM       D A+ S ++     +G  D    + 
Sbjct: 102 DVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKAC--SGIEDYGLGLQ 159

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
           V C +   G E+ V   + L+  Y +  +++ A ++F ++P            +RN+V W
Sbjct: 160 VHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMP------------ERNLVCW 207

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLE-------------------RDTFSWNTMISGYIHV 246
           +++I  Y +    +   ++F+ ML+                      F   T + G  H 
Sbjct: 208 SAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHG--HA 265

Query: 247 LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           L  + A          D++   A +  YA+   +  A   F  +P     S+N++I G  
Sbjct: 266 LKSDFAY---------DSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYA 316

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL-GMQIHQMVTKTVIP-DV 364
                  A+++F  +Q      D  + S  L+  S ++  HL G+Q+H +  K  +  ++
Sbjct: 317 RQDQGLKALEIFQSLQRTYLSFDEISLSGALTACS-VIKGHLEGIQLHGLAVKCGLGFNI 375

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            + N ++ MY +CGA+VEA  IF++M+  ++ VSWNA+I     +    + L LF SM  
Sbjct: 376 CVANTILDMYGKCGALVEACTIFDDME-RRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLR 434

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
             + P   T+ SV+ ACA    +  G + H + + +  G++  +   ++LVD+ G+ G L
Sbjct: 435 STMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVG--SALVDMYGKCGML 492

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL--MKVEPENSTPYVLLYN 541
            +A + I     E     W +++         E AQ     +  M V P+N T Y  + +
Sbjct: 493 MEA-EKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFT-YATVLD 550

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPT--GYSWVD-FSPCG 579
           + A++   +   ++   +   N+        + VD +S CG
Sbjct: 551 VCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCG 591



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 127/282 (45%), Gaps = 36/282 (12%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG----------------- 304
           P     N +V  Y +  N+  A   F RMP ++++SWN+MI G                 
Sbjct: 39  PTIYVANCLVQFYCKSSNMNYAFKVFDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTM 98

Query: 305 -------------CET-NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
                        C   N     +I++F++M+      D  TFS +L   SGI D  LG+
Sbjct: 99  PERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGL 158

Query: 351 QIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           Q+H +  +     DV   +AL+ MY++C  +  A  IF EM   +N+V W+A+I G   +
Sbjct: 159 QVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMP-ERNLVCWSAVIAGYVQN 217

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIE 468
               E L+LFK M    +  +  T+ SV  +CA     + G Q H  ++ +++  +  I 
Sbjct: 218 DRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIG 277

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
              + +D+  +  R+ DA  +   +P  P ++    ++G  R
Sbjct: 278 --TATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYAR 317



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 37/212 (17%)

Query: 330 RHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFE 388
           + TFS IL   S +  L+ G Q H QM+  + +P + + N L+  Y +   +  A  +F+
Sbjct: 6   KFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFD 65

Query: 389 EMKLLKNVVSWNAMIGGCA---SHGFAT----------------------------EALE 417
            M   ++V+SWN MI G A   + GFA                             +++E
Sbjct: 66  RMP-HRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIE 124

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDI 476
           +F  MRS K+   Y TF  VL AC  +G+ + G       +  + G E  +   ++LVD+
Sbjct: 125 IFVRMRSLKIPHDYATFSVVLKAC--SGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDM 182

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
             +  +L+ A  + + MP E +   W A++  
Sbjct: 183 YSKCKKLDGAFRIFREMP-ERNLVCWSAVIAG 213


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 224/731 (30%), Positives = 356/731 (48%), Gaps = 157/731 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS------------------ 42
           MI+GY K  +M KA   F+ MP RDVVSWN M+SGY+ +  S                  
Sbjct: 78  MINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFD 137

Query: 43  -----------GFLEEARYLFDIMP-------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                       FLE+      I         + D V  + ++  YAK     E+LR+F 
Sbjct: 138 GRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQ 197

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG--------------RDSASLSAL-V 129
            +P +N VSW+A+I+G +QN  ++ A++FF  M                R  A+LS L +
Sbjct: 198 GIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRL 257

Query: 130 SGLIQNGEL--DEAARVLVKCGS-----RCDGGEDLV-----------RAYNTLIVGYGQ 171
            G +    L  D AA  +V+  +     +CD  +D             ++YN +I GY Q
Sbjct: 258 GGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQ 317

Query: 172 RGRVEEARKLF----------DKIPVN-----CDRGEG------------NVRFKRNIVS 204
                +A  LF          D+I ++     C   +G                  ++  
Sbjct: 318 EEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCV 377

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP---- 260
            N+ I  Y K   +  A  +F++M  RD  SWN +I+ +       E   LFV M     
Sbjct: 378 ANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRI 437

Query: 261 HPDTLTWNAMVSG----------------------------------YAQIGNLELALD- 285
            PD  T+ +++                                    Y++ G +E A   
Sbjct: 438 EPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKI 497

Query: 286 ---FFKR------------MPQKNL----VSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
              FF+R            M  K L    VSWNS+I+G    +  E A  LF +M   G 
Sbjct: 498 HSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGI 557

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARI 385
            PD+ T++++L   + +    LG QIH Q++ K +  DV I + L+ MY++CG + ++R+
Sbjct: 558 TPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRL 617

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +FE+  L ++ V+WNAMI G A HG   EA++LF+ M    + P ++TFIS+L ACAH G
Sbjct: 618 MFEK-SLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMG 676

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           L+++G ++F  M  +YG++P++ H++++VDI+G+ G+++ A++LI+ MPFE D  +W  L
Sbjct: 677 LIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTL 736

Query: 506 LGACRVH-NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           LG C +H NNVE+A+ A  AL++++P++S+ Y LL N+YAD G W+  +++R  M+   +
Sbjct: 737 LGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKL 796

Query: 565 KKPTGYSWVDF 575
           KK  G SWV+ 
Sbjct: 797 KKEPGCSWVEL 807



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 136/473 (28%), Positives = 226/473 (47%), Gaps = 39/473 (8%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N ++  Y +SR       A  +FD MP RD V+WN +I+GY+K+ +M +A   FN MP R
Sbjct: 45  NCLLQVYTNSRD---FVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVR 101

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRM-------PGRDSASLSALVSGLIQNGELDEAA 142
           +VVSWN+M+SG+LQNG+   +IE F  M        GR  A +  + S L       +  
Sbjct: 102 DVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIH 161

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
            ++V+ G   D     V A + L+  Y +  R  E+ ++F  IP            ++N 
Sbjct: 162 GIVVRVGCDTD-----VVAASALLDMYAKGKRFVESLRVFQGIP------------EKNS 204

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH----VLDMEEASNLFVK 258
           VSW+++I    +   +  A + F++M + +     ++ +  +     + ++     L   
Sbjct: 205 VSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAH 264

Query: 259 MPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
                   D +   A +  YA+  N++ A   F      N  S+N+MI G    +    A
Sbjct: 265 ALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKA 324

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITM 373
           + LF ++   G   D  + S +    + +  L  G+QI+ +  K+ +  DV + NA I M
Sbjct: 325 LLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDM 384

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           Y +C A+ EA  +F+EM+  ++ VSWNA+I     +G   E L LF SM   ++ P   T
Sbjct: 385 YGKCQALAEAFRVFDEMR-RRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFT 443

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           F S+L AC   G +  G +   S+V   G+        SL+D+  + G +E+A
Sbjct: 444 FGSILKACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEA 494



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 143/260 (55%), Gaps = 5/260 (1%)

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           TF  N ++  Y +  D   AS +F KMP  D ++WN M++GY++  ++  A  FF  MP 
Sbjct: 41  TFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPV 100

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           +++VSWNSM++G   N +   +I++F+ M  EG + D  TF+ IL + S + D  LGMQI
Sbjct: 101 RDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQI 160

Query: 353 HQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H +V +     DV   +AL+ MYA+    VE+  +F+ +   KN VSW+A+I GC  +  
Sbjct: 161 HGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIP-EKNSVSWSAIIAGCVQNNL 219

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHF 470
            + AL+ FK M+      +   + SVL +CA    +  G Q H  ++ +++  +  +   
Sbjct: 220 LSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVR-- 277

Query: 471 ASLVDIVGRHGRLEDAMDLI 490
            + +D+  +   ++DA  L 
Sbjct: 278 TATLDMYAKCDNMQDAQILF 297


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 181/504 (35%), Positives = 286/504 (56%), Gaps = 20/504 (3%)

Query: 77  EEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG 136
           +EALR+++ M A  V + +   +  L+  + + A+E   R+   +   L    S  +QN 
Sbjct: 56  KEALRVYSRMKALMVEANSFTFTFLLKCFETSQALED-GRVIHGEILKLGFGSSVFVQNS 114

Query: 137 ELDEAARVLVKCGSRCDGGEDL----VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
            L   A      GS     E++    V ++N++I  Y  RG ++ A  L DK+P      
Sbjct: 115 LLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMP------ 168

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
                 +RNIV+WNS++   +KAG++  A  +FEQM  R+  SWN+MISGY+ + D+  A
Sbjct: 169 ------ERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAA 222

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
            ++F +MP    ++W AM+SGYA  G+L+ A + F  MP KN+VSWN+MI+G   N +++
Sbjct: 223 QSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFD 282

Query: 313 GAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNAL 370
            A+ +F  M + GE +PD+ T  SILS  + +  L  G  I+  + K  +   +P+ NAL
Sbjct: 283 QALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNAL 342

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           I M+A+CG +  A+ +F  M   + +++W  M+ G A +G   EA+ LF  M      P 
Sbjct: 343 IDMFAKCGDVENAKEVFHHMSK-RCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPD 401

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            + FI+VLSAC H GLVEEG++ F  MV E+GI+PRIEH+  +VD++GR G+LE+A+   
Sbjct: 402 DVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFT 461

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
             M  +P+  +W  LL  C++H N +L +   E +M  EP N +   L+ N+ A  GRW+
Sbjct: 462 ARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASFGRWE 521

Query: 551 DANEVRLLMKSNNIKKPTGYSWVD 574
           D    R+ M+   ++K  G S + 
Sbjct: 522 DVLSFRVAMRQQRMEKVPGCSSIQ 545



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 123/406 (30%), Positives = 197/406 (48%), Gaps = 53/406 (13%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGY 70
           +  A ++F+EMP+RDV+SWN MIS Y++    G ++ A  L D MPER+ VTWN+V+ G 
Sbjct: 126 LGSAYRVFEEMPERDVISWNSMISAYMTR---GEIQSAIGLLDKMPERNIVTWNSVVCGL 182

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
           +K G ME A  +F  MP RN VSWN+MISG+++ GDV  A   F +MP +   S +A++S
Sbjct: 183 SKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMIS 242

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN-- 188
           G   NG+L  A  +      +       V ++N +I GY      ++A  +F  + +N  
Sbjct: 243 GYATNGDLKSAENIFNHMPVKN------VVSWNAMISGYVHNHEFDQALCVFHHMLINGE 296

Query: 189 CDRGEG---------------------NVRFKRN-----IVSWNSMIMCYAKAGDVVSAR 222
           C   +                      N   K+N     I   N++I  +AK GDV +A+
Sbjct: 297 CRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAK 356

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIG 278
           E+F  M +R   +W TM+SG        EA NLF KM      PD + + A++S     G
Sbjct: 357 EVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGG 416

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEKPDRHTF 333
            +E     F +M Q+  +       GC  +        E A++   +M +   KP+   +
Sbjct: 417 LVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHL---KPNAVIW 473

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGA 379
           +++L        +H    + + VT+ ++   P N + +T+ +   A
Sbjct: 474 ATLLF----CCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSA 515



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 182/414 (43%), Gaps = 66/414 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISGYV+  ++  A+ +F +MP++ VVSW  MISGY +   +G L+ A  +F+ MP ++ 
Sbjct: 209 MISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYAT---NGDLKSAENIFNHMPVKNV 265

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM-------PAR----NVVSWNAMISGFLQNGDVAN 109
           V+WN +ISGY    E ++AL +F+ M       P +    +++S  A + G L++G   N
Sbjct: 266 VSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHL-GSLEHGKWIN 324

Query: 110 AIEFFDRMPGRDSASL-SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           +  +  +     S  L +AL+    + G+++ A  V      RC      +  + T++ G
Sbjct: 325 S--YIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRC------IITWTTMVSG 376

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
               G+  EA  LFDK+   C  G      K + V + +++      G V   + +F+QM
Sbjct: 377 LAVNGKCREAINLFDKM---CLEGT-----KPDDVIFIAVLSACTHGGLVEEGKRVFDQM 428

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
           ++   F     I  Y                          MV    + G LE A+ F  
Sbjct: 429 VQE--FGIKPRIEHY------------------------GCMVDLLGRAGKLEEAVRFTA 462

Query: 289 RMPQK-NLVSWNSMIAGCET--NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG--- 342
           RM  K N V W +++  C+   N D   ++   I M  E   P   T  S LS S G   
Sbjct: 463 RMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKI-MDQEPSNPSYLTLVSNLSASFGRWE 521

Query: 343 -IVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
            ++   + M+  +M        + + N +    A+    V+ + I+  +   KN
Sbjct: 522 DVLSFRVAMRQQRMEKVPGCSSIQVGNRVHEFLAKDTRHVQRKEIYRALSHYKN 575


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 189/533 (35%), Positives = 298/533 (55%), Gaps = 43/533 (8%)

Query: 44  FLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQ 103
           FL  A+ +F  +       +N++I   + +    EAL L+++M               LQ
Sbjct: 144 FLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTM---------------LQ 188

Query: 104 NGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN 163
           +G   + + +   +   + +S++    GL+ +  +       VK G  CD         +
Sbjct: 189 SGLKPDHMTYPFVIKACNESSVTWF--GLLVHTHV-------VKSGFECDS-----YIVS 234

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
           +LI  Y     +  A++LF            N+   R++VSWN+MI  Y K  ++  AR 
Sbjct: 235 SLIHLYANGKDLGAAKQLF------------NLCSARDVVSWNAMIDGYVKHVEMGHARM 282

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           +F++M+ RD  SWNTMI+GY  V  ++EA  LF +MP  + ++WN+M++G+ + GN+E A
Sbjct: 283 VFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDA 342

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F  MP +++VSWNSM+A          A+ LF QM+  G KP   T  S+LS  + +
Sbjct: 343 FGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHL 402

Query: 344 VDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             L  G+ +H  +    I  +  +  AL+ MYA+CG I  A  +F  M+  K+V++WN +
Sbjct: 403 GALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES-KDVLAWNTI 461

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I G A HG   EA +LFK M+   V P  ITF+++LSAC+HAG+V+EG++    M + YG
Sbjct: 462 IAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYG 521

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           IEP++EH+  ++D++ R G LE+AM+LI  MP EP+ +  GALLG CR+H N EL ++  
Sbjct: 522 IEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVG 581

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           + L+ ++P +S  Y+LL N+YA   +WDDA +VR LMK N I K  G S ++ 
Sbjct: 582 KRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIEL 634



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 200/405 (49%), Gaps = 33/405 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y   +++  A++LF+    RDVVSWN MI GY+     G    AR +FD M  RD 
Sbjct: 236 LIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMG---HARMVFDRMVCRDV 292

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++WNT+I+GYA  G+++EA RLF+ MP RN+VSWN+M++GF++ G+V +A   F  MP R
Sbjct: 293 ISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCR 352

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  S +++++   Q G+ +EA  +  +   R  G +       +L+      G +++   
Sbjct: 353 DVVSWNSMLACYAQCGKPNEALALFDQ--MRAVGVKPTEATVVSLLSACAHLGALDKGLH 410

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           L   I  N        R + N +   +++  YAK G +  A ++F  M  +D  +WNT+I
Sbjct: 411 LHTYINDN--------RIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTII 462

Query: 241 SGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           +G     +++EA  LF +M      P+ +T+ A++S  +  G ++        M     +
Sbjct: 463 AGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGI 522

Query: 297 SWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
                  GC  +        E A++L   M +E   P+     ++L    G   +H   +
Sbjct: 523 EPKVEHYGCVIDLLARAGFLEEAMELIGTMPME---PNPSALGALL----GGCRIHGNFE 575

Query: 352 IHQMVTKTVIPDVPINNA----LITMYARCGAIVEARIIFEEMKL 392
           + +MV K +I   P ++     L  +YA      +AR +   MK+
Sbjct: 576 LGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKV 620



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 132/307 (42%), Gaps = 20/307 (6%)

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           L  A   F  +       +NS+I    ++K    A+ L+  M   G KPD  T+  ++  
Sbjct: 145 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA 204

Query: 340 SSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            +       G+ +H  V K+    D  I ++LI +YA    +  A+ +F  +   ++VVS
Sbjct: 205 CNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLF-NLCSARDVVS 263

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WNAMI G   H     A  +F  M    V    I++ ++++  A  G ++E ++ F  M 
Sbjct: 264 WNAMIDGYVKHVEMGHARMVFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFDEMP 319

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH---NNV 515
                E  +  + S++    + G +EDA  L   MP   D   W ++L AC       N 
Sbjct: 320 -----ERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCR-DVVSWNSML-ACYAQCGKPNE 372

Query: 516 ELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK--KPTGYSWV 573
            LA       + V+P  +T  V L +  A +G  D    +   +  N I+     G + V
Sbjct: 373 ALALFDQMRAVGVKPTEAT-VVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALV 431

Query: 574 D-FSPCG 579
           D ++ CG
Sbjct: 432 DMYAKCG 438


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 213/710 (30%), Positives = 349/710 (49%), Gaps = 137/710 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----------------------- 37
           +I  Y K+  + +AR++F+++  RD VSW  M+SGY                        
Sbjct: 83  LIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPT 142

Query: 38  ---------SSRGSGFLEEARYLF-DIMPERDC---VTWNTVISGYAKTGEMEEALRLFN 84
                    +   +   E+ R +   +  +  C   V  N +I+ Y + G +  A R+F+
Sbjct: 143 PYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFS 202

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFD--RMPG--RDSASLSALVSGLIQNGELDE 140
            MP  + V++N +IS   Q G+  +A+E F+  R+ G   D  ++++L++     G+L++
Sbjct: 203 EMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNK 262

Query: 141 AARV----------------------LVKCGSRCD-------GGEDLVRAYNTLIVGYGQ 171
             ++                       VKCG   +       G    V  +N ++V YGQ
Sbjct: 263 GKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQ 322

Query: 172 RGRVEEARKLFDKIPVNCDR----------------GEGNVRFKRNIVSWNS-------- 207
              + ++  LF ++     R                GE N+  + +++S  +        
Sbjct: 323 ISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYV 382

Query: 208 ---MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA------------ 252
              +I  Y+K G +  AR I E +  +D  SW +MI+GY+     +EA            
Sbjct: 383 SGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGI 442

Query: 253 ---------------------------SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
                                      S ++V     D   WNA+V+ YA+ G  + A  
Sbjct: 443 WPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFS 502

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F+ +  K+ ++WN M++G   +  YE A+++FI+M   G K +  TF S +S S+ + D
Sbjct: 503 LFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLAD 562

Query: 346 LHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           +  G QIH  V KT    +  + NALI++Y +CG+I +A++ F EM   +N VSWN +I 
Sbjct: 563 IKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSE-RNHVSWNTIIT 621

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
            C+ HG+  EAL+LF  M+   + P  +TFI VL+AC+H GLVEEG  +FKSM +E+GI 
Sbjct: 622 SCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIH 681

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           PR +H+A +VDI+GR G+L+ A   ++ MP   +  VW  LL ACRVH N+E+ ++AA+ 
Sbjct: 682 PRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKY 741

Query: 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           L+++EP +S  YVLL N YA  G+W   + VR +MK   ++K  G SW++
Sbjct: 742 LLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIE 791



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 144/467 (30%), Positives = 236/467 (50%), Gaps = 42/467 (8%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM- 117
           D +  N +I  YAK G ++ A R+F  + AR+ VSW AM+SG+ +NG    A+  + +M 
Sbjct: 76  DRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMH 135

Query: 118 -------PGRDSASLSALV-SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
                  P   S+ LSA   + L + G L  A   + K GS C   E +V   N LI  Y
Sbjct: 136 CSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQ--VYKQGS-CS--ETVVG--NALIALY 188

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM- 228
            + G +  A ++F ++P  CDR           V++N++I  +A+ G+  SA EIFE+M 
Sbjct: 189 LRFGSLSLAERVFSEMPY-CDR-----------VTFNTLISRHAQCGNGESALEIFEEMR 236

Query: 229 ---LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLE 281
                 D  +  ++++    + D+ +   L   +      PD +   +++  Y + G + 
Sbjct: 237 LSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIV 296

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            AL+ FK   + N+V WN M+       D   +  LF QM   G +P+  T+  +L   +
Sbjct: 297 EALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCT 356

Query: 342 GIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
              +++LG QIH +  KT    D+ ++  LI MY++ G + +AR I E ++  K+VVSW 
Sbjct: 357 YAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLE-AKDVVSWT 415

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVN 459
           +MI G   H F  EALE FK M+ F + P  I   S +SACA    + +G+Q H +  V+
Sbjct: 416 SMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVS 475

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            Y  +  I  + +LV++  R GR ++A  L + +  + DK  W  ++
Sbjct: 476 GYSADVSI--WNALVNLYARCGRSKEAFSLFEAIEHK-DKITWNGMV 519



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 171/367 (46%), Gaps = 52/367 (14%)

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246
           + C  GE       + ++ N +I  YAK G V  AR +FEQ+  RD  SW  M+SGY   
Sbjct: 69  ITCGLGE-------DRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARN 121

Query: 247 LDMEEASNLFVKM------PHP---------------------------------DTLTW 267
              EEA  L+ +M      P P                                 +T+  
Sbjct: 122 GLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVG 181

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           NA+++ Y + G+L LA   F  MP  + V++N++I+      + E A+++F +M++ G  
Sbjct: 182 NALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWT 241

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARII 386
           PD  T +S+L+  + I DL+ G Q+H  + K  + PD  I  +L+ +Y +CG IVEA  I
Sbjct: 242 PDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEI 301

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+      NVV WN M+          ++ +LF  M +  V P   T+  +L  C +AG 
Sbjct: 302 FKSGD-RTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGE 360

Query: 447 VEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           +  G Q H  S+  + G E  +     L+D+  ++G L+ A  +++ +    D   W ++
Sbjct: 361 INLGEQIHLLSI--KTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLE-AKDVVSWTSM 417

Query: 506 LGACRVH 512
           +     H
Sbjct: 418 IAGYVQH 424


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 212/712 (29%), Positives = 347/712 (48%), Gaps = 141/712 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           +I GY     M  A+ LFD MP+RDVVSWN ++S Y                        
Sbjct: 78  LIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHD 137

Query: 37  -------------ISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
                        I   G G L+       +  E D VT + ++  Y+K  ++++A R+F
Sbjct: 138 YATFAVILKACSGIEDYGLG-LQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVF 196

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG--------------RDSASLSALV 129
             MP RN+V W+A+I+G++QN      ++ F  M                R  A LSA  
Sbjct: 197 REMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFK 256

Query: 130 SGLIQNGEL---DEAARVLVKCGS-----RCDGGEDLVRAYNTL-----------IVGYG 170
            G   +G     D A   ++   +     +C+   D  + +NTL           IVGY 
Sbjct: 257 LGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYA 316

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRF----------KR------------------NI 202
           ++ +  +A  +F  +  N + G   +            KR                  NI
Sbjct: 317 RQDQGLKALDIFQSLQRN-NLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNI 375

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP-- 260
              N+++  Y K G ++ A  IFE+M  RD  SWN +I+ +    ++ +  +LFV M   
Sbjct: 376 CVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRS 435

Query: 261 --HPDTLTW-----------------------------------NAMVSGYAQIGNLELA 283
              PD  T+                                   +A+V  Y + G L  A
Sbjct: 436 TMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEA 495

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
                R+ +K  VSWNS+I+G  + K  E A + F QM   G  PD +T++++L + + +
Sbjct: 496 EKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANM 555

Query: 344 VDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             + LG QIH  + K  +  DV I + L+ MY++CG + ++R++FE+    ++ V+W+AM
Sbjct: 556 ATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPK-RDYVTWSAM 614

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I   A HG   +A+ LF+ M+   V P +  FISVL ACAH G V++G  +F+ M++ YG
Sbjct: 615 ICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYG 674

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           ++P++EH++ +VD++GR G++ +A+ LI+ MPFE D  +W  LL  C++  NVE+A+ A 
Sbjct: 675 LDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAF 734

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            +L++++P++S+ YVLL N+YA VG W +  ++R +MK+  +KK  G SW++
Sbjct: 735 NSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIE 786



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 166/634 (26%), Positives = 291/634 (45%), Gaps = 104/634 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K  +M  A K+FD MPQRDV+SWN +I GY      GF   A+ LFD MPERD 
Sbjct: 47  LLQFYCKSSKMNYAFKVFDRMPQRDVISWNTLIFGYAGIGNMGF---AQSLFDSMPERDV 103

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPA-------------------------------- 88
           V+WN+++S Y   G   +++ +F  M +                                
Sbjct: 104 VSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCL 163

Query: 89  -------RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                   +VV+ +A++  + +   + +A   F  MP R+    SA+++G +QN    E 
Sbjct: 164 AIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEG 223

Query: 142 ARV---LVKCG------------SRCDG-----------GEDLVR--AYNTLIVG----- 168
            ++   ++K G              C G           G  L    AY+++I       
Sbjct: 224 LKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDM 283

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y +  R+ +A K+F+ +P N  R            S+N++I+ YA+    + A +IF Q 
Sbjct: 284 YAKCERMFDAWKVFNTLP-NPPRQ-----------SYNAIIVGYARQDQGLKALDIF-QS 330

Query: 229 LERDTFSWNTM-ISGYIHV-------LDMEEASNLFVKMPHP-DTLTWNAMVSGYAQIGN 279
           L+R+   ++ + +SG +         L+  +   L VK     +    N ++  Y + G 
Sbjct: 331 LQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGA 390

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           L  A   F+ M +++ VSWN++IA  E N++    + LF+ M     +PD  T+ S++  
Sbjct: 391 LMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKA 450

Query: 340 SSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            +G   L+ G +IH  + K+ +  D  + +AL+ MY +CG ++EA  I   ++  K  VS
Sbjct: 451 CAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLE-EKTTVS 509

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN++I G +S   +  A   F  M    ++P   T+ +VL  CA+   +E G+Q   + +
Sbjct: 510 WNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQ-IHAQI 568

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            +  +   +   ++LVD+  + G ++D+  + +  P + D   W A++ A   H   E A
Sbjct: 569 LKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAP-KRDYVTWSAMICAYAYHGLGEKA 627

Query: 519 QVAAE--ALMKVEPENSTPYVLLYNMYADVGRWD 550
               E   L+ V+P N T ++ +    A +G  D
Sbjct: 628 INLFEEMQLLNVKP-NHTIFISVLRACAHMGYVD 660



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 157/583 (26%), Positives = 271/583 (46%), Gaps = 69/583 (11%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N ++  Y  S    +   A  +FD MP+RD ++WNT+I GYA  G M  A  LF+SMP R
Sbjct: 45  NCLLQFYCKSSKMNY---AFKVFDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPER 101

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDEAARVL 145
           +VVSWN+++S +L NG    +IE F RM       D A+ + ++     +G  D    + 
Sbjct: 102 DVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILKAC--SGIEDYGLGLQ 159

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
           V C +   G E+ V   + L+  Y +  ++++A ++F ++P            +RN+V W
Sbjct: 160 VHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMP------------ERNLVCW 207

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLE-------------------RDTFSWNTMISGYIHV 246
           +++I  Y +    +   ++F+ ML+                      F   T + G  H 
Sbjct: 208 SAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHG--HA 265

Query: 247 LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           L  + A          D++   A +  YA+   +  A   F  +P     S+N++I G  
Sbjct: 266 LKSDFAY---------DSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYA 316

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL-GMQIHQMVTKTVIP-DV 364
                  A+ +F  +Q      D  + S  L+  S ++  HL G+Q+H +  K  +  ++
Sbjct: 317 RQDQGLKALDIFQSLQRNNLGFDEISLSGALTACS-VIKRHLEGIQLHGLAVKCGLGFNI 375

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            + N ++ MY +CGA++EA +IFEEM+  ++ VSWNA+I     +    + L LF SM  
Sbjct: 376 CVANTILDMYGKCGALMEACLIFEEME-RRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLR 434

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
             + P   T+ SV+ ACA    +  G + H + + +  G++  +   ++LVD+ G+ G L
Sbjct: 435 STMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVG--SALVDMYGKCGML 492

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL--MKVEPENSTPYVLL-- 539
            +A + I     E     W +++         E AQ     +  M + P+N T   +L  
Sbjct: 493 MEA-EKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDV 551

Query: 540 -YNMYA-DVGRWDDANEVRLLMKSNNIKKPTGYSWVD-FSPCG 579
             NM   ++G+   A  ++L + S+     T    VD +S CG
Sbjct: 552 CANMATIELGKQIHAQILKLQLHSDVYIAST---LVDMYSKCG 591



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 37/210 (17%)

Query: 332 TFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM 390
           TFS IL   S +  L+ G Q+H QM+    +P + + N L+  Y +   +  A  +F+ M
Sbjct: 8   TFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRM 67

Query: 391 KLLKNVVSWNAMI---GGCASHGFAT----------------------------EALELF 419
              ++V+SWN +I    G  + GFA                             +++E+F
Sbjct: 68  P-QRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVG 478
             MRS K+   Y TF  +L AC  +G+ + G       +  + G E  +   ++LVD+  
Sbjct: 127 VRMRSLKIPHDYATFAVILKAC--SGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYS 184

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           +  +L+DA  + + MP E +   W A++  
Sbjct: 185 KCKKLDDAFRVFREMP-ERNLVCWSAVIAG 213


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 197/628 (31%), Positives = 332/628 (52%), Gaps = 71/628 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           ++   VK   +  AR+LFD+M QRD +SW  +ISGY++   +    EA  LF  M     
Sbjct: 7   VLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNT---TEALSLFSKMWVEPG 63

Query: 56  ----------PERDC-----VTWNTVISGYA--------------------KTGEMEEAL 80
                       + C     V++   + GY+                    K G+++E  
Sbjct: 64  LHMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGC 123

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNG 136
            +F  MP RNVVSW A+I+G ++ G    A+ +F  M     G D+ + S+ +     +G
Sbjct: 124 IVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSG 183

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            L+    +   C +   G   +    NTL   Y + G+++   +LF+ +           
Sbjct: 184 ALNYGREI--HCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMT---------- 231

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEEA 252
             +R++VSW ++IM   + G   +A + F +M E D     F++  +ISG   +  +E  
Sbjct: 232 --QRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWG 289

Query: 253 SNL---FVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             L    ++    D+L+  N++++ Y++   L+LA   F+ + +++++SW++MI+G    
Sbjct: 290 EQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQG 349

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPIN 367
              E A      M+ EG +P+   F+S+LS+   +  L  G Q+H  V    +  +  + 
Sbjct: 350 GCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQ 409

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           +ALI MY++CG+I EA  IF+E +   N+VSW AMI G A HG++ EA++LFK +    +
Sbjct: 410 SALINMYSKCGSIKEASKIFDEAEY-NNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGL 468

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
            P  +TFI+VL+AC+HAGLV+ G  +F S+   + I P  +H+  ++D++ R GRL DA 
Sbjct: 469 RPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAE 528

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
            +I+ MPF+ D  VW  LL ACR+H +V+  + AAE +++++P  +  ++ L NMYA  G
Sbjct: 529 SMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKG 588

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           +W +A EVR +MKS  + K  G+SW+ F
Sbjct: 589 KWKEAAEVRKMMKSKGVVKEPGWSWIKF 616



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 25/223 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           +I+ Y K   + +A K+FDE    ++VSW  MI+GY      G+ +EA  LF  +P+   
Sbjct: 412 LINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAE---HGYSQEAIDLFKKLPKVGL 468

Query: 58  -RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
             D VT+  V++  +  G ++     FNS+   + +      +  MI    + G + +A 
Sbjct: 469 RPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAE 528

Query: 112 EFFDRMP-GRDSASLSALVSGLIQNGELD---EAARVLVKCGSRCDGGEDLVRAYNTLIV 167
                MP  RD    S L+     +G++D    AA  +++    C         + TL  
Sbjct: 529 SMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNC------AVTHITLAN 582

Query: 168 GYGQRGRVEEA---RKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
            Y  +G+ +EA   RK+     V  + G   ++FK  + ++ S
Sbjct: 583 MYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKDRVSAFVS 625


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 206/621 (33%), Positives = 333/621 (53%), Gaps = 68/621 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-----------FLEEAR 49
           +++ Y    +++ +   F  + ++++ SWN M+S Y+  RG              L   R
Sbjct: 89  LVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVR-RGRYRDSMDCVTELLSLSGVR 147

Query: 50  YLFDIMP------------------------ERDCVTWNTVISGYAKTGEMEEALRLFNS 85
             F   P                        E D     ++I  Y++ G +E A ++F  
Sbjct: 148 PDFYTFPPVLKACLSLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVD 207

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEA 141
           MP R+V SWNAMISGF QNG+VA A+   DRM       D+ ++S+++    Q+   D  
Sbjct: 208 MPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSN--DVV 265

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             VLV       G E  V   N LI  Y + GR+++A+++FD + V            R+
Sbjct: 266 GGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEV------------RD 313

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLD--MEEASNL 255
           +VSWNS+I  Y +  D V+A   F++ML      D  +  ++ S +  + D  +  A + 
Sbjct: 314 LVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHG 373

Query: 256 FV---KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           FV   +    D +  NA+V+ YA++G+++ A   F+++P ++++SWN++I G   N    
Sbjct: 374 FVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLAS 433

Query: 313 GAIKLFIQMQVEGEK--PDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNA 369
            AI  +  M+ EG    P++ T+ SIL   S +  L  GM+IH +++   +  DV +   
Sbjct: 434 EAIDAYNMME-EGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATC 492

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           LI MY +CG + +A  +F E+   +  V WNA+I     HG   +AL+LFK MR+  V  
Sbjct: 493 LIDMYGKCGRLEDAMSLFYEIPQ-ETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKA 551

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
            +ITF+S+LSAC+H+GLV+E +  F +M  EY I+P ++H+  +VD+ GR G LE A +L
Sbjct: 552 DHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNL 611

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
           +  MP + D ++WG LL ACR+H N EL   A++ L++V+ EN   YVLL N+YA+VG+W
Sbjct: 612 VSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKW 671

Query: 550 DDANEVRLLMKSNNIKKPTGY 570
           + A +VR L +   ++K  G+
Sbjct: 672 EGAVKVRSLARDRGLRKTPGW 692



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 134/474 (28%), Positives = 239/474 (50%), Gaps = 30/474 (6%)

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           +D V    +++ YA  G++  +   F  +  +N+ SWN+M+S +++ G   ++++    +
Sbjct: 81  QDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTEL 140

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
                          +    L  A    + C     G E  V    +LI  Y + G VE 
Sbjct: 141 LSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEV 200

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDT 233
           A K+F  +PV            R++ SWN+MI  + + G+V  A  + ++M    ++ DT
Sbjct: 201 AHKVFVDMPV------------RDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDT 248

Query: 234 FSWNTMISGYIHVLDMEEA--SNLFVKMPH---PDTLTWNAMVSGYAQIGNLELALDFFK 288
            + ++M+       D+      +L+V + H    D    NA+++ Y++ G L+ A   F 
Sbjct: 249 VTVSSMLPICAQSNDVVGGVLVHLYV-IKHGLESDVFVSNALINMYSKFGRLQDAQRVFD 307

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            M  ++LVSWNS+IA  E N D   A+  F +M   G +PD  T  S+ S+   + D  +
Sbjct: 308 GMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRI 367

Query: 349 GMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           G  +H  V +   +  D+ I NAL+ MYA+ G+I  AR +FE++   ++V+SWN +I G 
Sbjct: 368 GRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLP-SRDVISWNTLITGY 426

Query: 407 ASHGFATEALELFKSMRSFK-VLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIE 464
           A +G A+EA++ +  M   + ++P   T++S+L A +H G +++G + H + + N   ++
Sbjct: 427 AQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLD 486

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
             +     L+D+ G+ GRLEDAM L   +P E     W A++ +  +H + E A
Sbjct: 487 VFVA--TCLIDMYGKCGRLEDAMSLFYEIPQET-SVPWNAIISSLGIHGHGEKA 537


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 212/712 (29%), Positives = 346/712 (48%), Gaps = 143/712 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           MI GY     M  A+ LFD MP+RDVVSWN M+S Y+ +   GF  ++  +F  M     
Sbjct: 110 MIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQN---GFHRKSIEIFTKMRLLEI 166

Query: 57  -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                                              + D VT   ++  Y+   +++ A  
Sbjct: 167 QHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFN 226

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--------------PGRDSASLSA 127
           +F  MP RN V W+A+I+G+++N      ++ +  M                R  A LSA
Sbjct: 227 IFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSA 286

Query: 128 LVSG-------LIQNGELDE-AARVLVKCGSRCDGGEDLVRAYNT-----------LIVG 168
              G       L  N   D       +   ++CD   D  + +NT           LIVG
Sbjct: 287 FELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVG 346

Query: 169 YGQRGRVEEARKLF----------DKIPVN-----CDRGEGNVR------------FKRN 201
           Y ++ +V EA ++F          D+I ++     C   +G +                N
Sbjct: 347 YARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFN 406

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP- 260
           I   N+++  YAK G ++ A  IF+ M  +D  SWN +I+ +     +EE   LFV M  
Sbjct: 407 ICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLR 466

Query: 261 ---HPDTLTW-----------------------------------NAMVSGYAQIGNLEL 282
               PD  T+                                   +A++  Y + G L  
Sbjct: 467 STMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVE 526

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A    +R+ ++  VSWNS+I+G  + K  E A+  F +M   G  PD  T++++L + + 
Sbjct: 527 AEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICAN 586

Query: 343 IVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  + LG QIH  + K  +  DV I + ++ MY++CG + ++RI+FE+    ++ V+W+A
Sbjct: 587 LATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPK-RDYVTWSA 645

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI   A HG   +A++LF+ M+   V P +  FISVL ACAH G V++G  +F+ M + Y
Sbjct: 646 MICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHY 705

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           G++P++EH++ +VD++GR G++ +A++LI+ MPFE D  +W  LLG CR+  NVE+A+ A
Sbjct: 706 GLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKA 765

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           A +L++++P++S+ YVLL N+YA  G W +  ++R  MK+  +KK  G SW+
Sbjct: 766 ANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWI 817



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 167/620 (26%), Positives = 278/620 (44%), Gaps = 110/620 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K   +  A  +FD+MPQRDV+SWN MI GY    G G +E A++LFD MPERD 
Sbjct: 79  LLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGY---AGVGNMEFAQFLFDSMPERDV 135

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPA-------------------------------- 88
           V+WN+++S Y + G   +++ +F  M                                  
Sbjct: 136 VSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCL 195

Query: 89  -------RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                   +VV+  A++  +     + +A   F  MP R+S   SA+++G ++N    E 
Sbjct: 196 AIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEG 255

Query: 142 ARV---------------LVKCGSRCDG-------------------GEDLVRAYNTLIV 167
            ++                      C G                   G D +    TL +
Sbjct: 256 LKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDM 315

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y +  R+ +ARK+F+  P N  R            S N++I+ YA+   V+ A EIF  
Sbjct: 316 -YAKCDRMVDARKVFNTFP-NPTRQ-----------SHNALIVGYARQDQVLEALEIFRS 362

Query: 228 M----LERDTFSWN------TMISGYIHVLDMEEASNLFVKMPHP-DTLTWNAMVSGYAQ 276
           +    L+ D  S +      + I GY+  + +     L VK     +    N ++  YA+
Sbjct: 363 LQKSYLDFDEISLSGALTACSAIKGYLEGIQLH---GLAVKCGLDFNICVANTILDMYAK 419

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            G L  A   F  M  K+ VSWN++IA  E N+  E  + LF+ M     +PD +TF S+
Sbjct: 420 CGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSV 479

Query: 337 LSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           +   +G   L+ GM++H  V K+ +  D  + +A+I MY +CG +VEA  I E ++  + 
Sbjct: 480 VKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLE-ERT 538

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
            VSWN++I G +S      AL  F  M    V+P   T+ +VL  CA+   VE G+Q   
Sbjct: 539 TVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQ-IH 597

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
             + +  +   +   +++VD+  + G ++D+  + +  P + D   W A++ A   H   
Sbjct: 598 GQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAP-KRDYVTWSAMICAYAYHG-- 654

Query: 516 ELAQVAAEALMKVEPENSTP 535
            L + A +   +++ +N  P
Sbjct: 655 -LGEDAIKLFEEMQLQNVKP 673



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 146/556 (26%), Positives = 249/556 (44%), Gaps = 64/556 (11%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L  A  +FD MP+RD ++WNT+I GYA  G ME A  LF+SMP R+VVSWN+M+S +LQN
Sbjct: 89  LNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQN 148

Query: 105 GDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR 160
           G    +IE F +M       D A+ + ++      G  D    + V C +   G +  V 
Sbjct: 149 GFHRKSIEIFTKMRLLEIQHDYATFAVVLKAC--TGIEDYGLGLQVHCLAIQMGFDSDVV 206

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
               L+  Y    +++ A  +F ++P            +RN V W+++I  Y +      
Sbjct: 207 TGTALVDMYSTCKKLDHAFNIFCEMP------------ERNSVCWSAVIAGYVRNDRFTE 254

Query: 221 AREIFEQMLE------RDTFSWNTMISGYIHVLDMEEASNLFVKMPH--PDTLTWNAMVS 272
             ++++ ML+      + TF+        +   ++    + +    +   D +   A + 
Sbjct: 255 GLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLD 314

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
            YA+   +  A   F   P     S N++I G         A+++F  +Q      D  +
Sbjct: 315 MYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEIS 374

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMK 391
            S  L+  S I     G+Q+H +  K  +  ++ + N ++ MYA+CGA++EA +IF++M+
Sbjct: 375 LSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDME 434

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
            +K+ VSWNA+I     +    E L LF SM    + P   TF SV+ ACA    +  G 
Sbjct: 435 -IKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGM 493

Query: 452 Q-HFKSMVNEYGIE-----PRIEHFAS---LVDIVGRHGRLEDAM-----DLIKGMPFE- 496
           + H + + +  G++       I+ +     LV+    H RLE+        +I G   E 
Sbjct: 494 EVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEK 553

Query: 497 ------------------PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV- 537
                             PD   +  +L  C     VEL +     ++K++  +S  Y+ 
Sbjct: 554 QGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQL-HSDVYIA 612

Query: 538 -LLYNMYADVGRWDDA 552
             + +MY+  G   D+
Sbjct: 613 STIVDMYSKCGNMQDS 628



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 143/275 (52%), Gaps = 6/275 (2%)

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           F  N ++  Y   L++  A N+F KMP  D ++WN M+ GYA +GN+E A   F  MP++
Sbjct: 74  FVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPER 133

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           ++VSWNSM++    N  +  +I++F +M++   + D  TF+ +L   +GI D  LG+Q+H
Sbjct: 134 DVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVH 193

Query: 354 QMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
            +  +     DV    AL+ MY+ C  +  A  IF EM   +N V W+A+I G   +   
Sbjct: 194 CLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMP-ERNSVCWSAVIAGYVRNDRF 252

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFA 471
           TE L+L+K M    +  +  TF S   +CA     E G Q H  ++   +G +  +    
Sbjct: 253 TEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVG--T 310

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           + +D+  +  R+ DA  +    P  P +    AL+
Sbjct: 311 ATLDMYAKCDRMVDARKVFNTFP-NPTRQSHNALI 344



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 37/209 (17%)

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARC------------- 377
           TFS I    S +  ++ G Q H  +T T  +P V ++N L+  Y +C             
Sbjct: 40  TFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99

Query: 378 ------------------GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
                             G +  A+ +F+ M   ++VVSWN+M+     +GF  +++E+F
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMP-ERDVVSWNSMLSCYLQNGFHRKSIEIF 158

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVG 478
             MR  ++   Y TF  VL AC   G+ + G       +  + G +  +    +LVD+  
Sbjct: 159 TKMRLLEIQHDYATFAVVLKAC--TGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYS 216

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
              +L+ A ++   MP E +   W A++ 
Sbjct: 217 TCKKLDHAFNIFCEMP-ERNSVCWSAVIA 244


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 194/520 (37%), Positives = 287/520 (55%), Gaps = 29/520 (5%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS- 124
           +IS ++   +M  A   FN +   NV  +N MI     N   + A   F  M  RD    
Sbjct: 58  LISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQ-RDGHYA 116

Query: 125 -------LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR--V 175
                  L  + +G +    ++     + K G   D     V   N+LI  Y + G   +
Sbjct: 117 DNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSD-----VFVPNSLIDSYSKCGSCGI 171

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
             A+KLF  +             +R++VSWNSMI   AK G    AR++F++M E+D  S
Sbjct: 172 SAAKKLFVSMGA-----------RRDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGIS 220

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           WNTM+ GY+ V  M++A  LF +MP  + ++W+ MV GY + G++E+A   F +MP KNL
Sbjct: 221 WNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNL 280

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           VSW  +++G         AI LF QM+    K D  T  SIL+  +    L LG +IH  
Sbjct: 281 VSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHAS 340

Query: 356 VTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           +          I+NAL+ MYA+CG +  A  +F ++K  K+VVSWNAM+ G A HG   +
Sbjct: 341 IKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKN-KDVVSWNAMLQGLAMHGHGVK 399

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           ALELFK M+     P  +T I VL AC HAGL+++G ++F +M  +Y + P +EH+  +V
Sbjct: 400 ALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMV 459

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D++GR GRLE+A+ LI+ MP  P+  +WG LLGACR+HN VELA+   + L+++EP +S 
Sbjct: 460 DLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNAVELAREVLDHLVELEPTDSG 519

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            + +L N+YA  G W+     RL M+S   KKP+G S ++
Sbjct: 520 NFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSGASSIE 559



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 176/349 (50%), Gaps = 34/349 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISG  K     +ARK+FDEMP++D +SWN M+ GY+     G +++A  LFD MPER+ 
Sbjct: 193 MISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVK---VGKMDDAFKLFDEMPERNV 249

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W+T++ GY K G+ME A  LF+ MP +N+VSW  ++SGF + G    AI  FD+M   
Sbjct: 250 VSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKA 309

Query: 121 ----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               D+ ++ ++++   ++G L    +  +    + +  +      N L+  Y + GR+ 
Sbjct: 310 CLKLDNGTVMSILAACAESGLLGLGEK--IHASIKNNNFKCTTEISNALVDMYAKCGRLN 367

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            A  +F+ I              +++VSWN+M+   A  G  V A E+F++M E + FS 
Sbjct: 368 IAYDVFNDIK------------NKDVVSWNAMLQGLAMHGHGVKALELFKRMKE-EGFSP 414

Query: 237 N--TMI---SGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDF 286
           N  TMI       H   +++    F  M       P+   +  MV    + G LE A+  
Sbjct: 415 NKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRL 474

Query: 287 FKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
            + MP   N + W +++  C  +   E A ++   + VE E  D   FS
Sbjct: 475 IRNMPMAPNAIIWGTLLGACRMHNAVELAREVLDHL-VELEPTDSGNFS 522



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 197/425 (46%), Gaps = 61/425 (14%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIM-PERDCVTWNTVISGYAKTGEMEEALRLF 83
           DV   N +I  Y S  GS  +  A+ LF  M   RD V+WN++ISG AK G  EEA ++F
Sbjct: 152 DVFVPNSLIDSY-SKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVF 210

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
           + MP ++ +SWN M+ G+++ G + +A + FD MP R+  S S +V G  + G+++ A  
Sbjct: 211 DEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARM 270

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
           +  K   +     +LV ++  ++ G+ ++G   EA  LFD++   C         K +  
Sbjct: 271 LFDKMPVK-----NLV-SWTIIVSGFAEKGLAREAISLFDQMEKAC--------LKLDNG 316

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG-----YIHVLDMEEASNLFVK 258
           +  S++   A++G ++   E     ++ + F   T IS      Y     +  A ++F  
Sbjct: 317 TVMSILAACAESG-LLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFND 375

Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
           + + D ++WNAM+ G A  G+   AL+ FKRM +                          
Sbjct: 376 IKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKE-------------------------- 409

Query: 319 IQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTK--TVIPDVPINNALITMY 374
                EG  P++ T   +L   +  G++D   G++    + +  T++P+V     ++ + 
Sbjct: 410 -----EGFSPNKVTMIGVLCACTHAGLID--DGIRYFSTMERDYTLVPEVEHYGCMVDLL 462

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
            R G + EA  +   M +  N + W  ++G C  H     A E+   +   +  PT    
Sbjct: 463 GRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNAVELAREVLDHLVELE--PTDSGN 520

Query: 435 ISVLS 439
            S+LS
Sbjct: 521 FSMLS 525



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 144/332 (43%), Gaps = 56/332 (16%)

Query: 220 SAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279
           S R++ EQ L       N      +H   ++  SNL     H D      ++S ++    
Sbjct: 15  STRKLLEQKLSDLHKCTNLNQVKQLHAQILK--SNL-----HVDLFVVPKLISAFSLCRQ 67

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           + LA + F ++   N+  +N+MI     N     A   F  MQ +G   D  TF  +L +
Sbjct: 68  MLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKV 127

Query: 340 SSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGA--IVEARIIFEEMKLLKNV 396
            +G V L +   +H  + K   + DV + N+LI  Y++CG+  I  A+ +F  M   ++V
Sbjct: 128 CTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDV 187

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
           VSWN+MI G A  G                                   L EE R+ F  
Sbjct: 188 VSWNSMISGLAKGG-----------------------------------LYEEARKVFDE 212

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL-LGACRVHNNV 515
           M  + GI      + +++D   + G+++DA  L   MP E +   W  + LG C+   ++
Sbjct: 213 MPEKDGIS-----WNTMLDGYVKVGKMDDAFKLFDEMP-ERNVVSWSTMVLGYCKA-GDM 265

Query: 516 ELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
           E+A++  +   K+  +N   + ++ + +A+ G
Sbjct: 266 EMARMLFD---KMPVKNLVSWTIIVSGFAEKG 294


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 207/614 (33%), Positives = 314/614 (51%), Gaps = 72/614 (11%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGF---LEEARYLFDIMPERDCVTWNTVISG- 69
           A  LFDEM  RD V+WN MISGY++S   G    L ++   F +MP  D  T+ +++ G 
Sbjct: 55  ACNLFDEMSHRDTVTWNTMISGYVNSGSLGSAWELYKSMKSFGLMP--DAYTFGSILKGV 112

Query: 70  ----------------------------------YAKTGEMEEALRLFNSMPARNVVSWN 95
                                             YAK   + +A  +F  +P RN VSWN
Sbjct: 113 ACACRLDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWN 172

Query: 96  AMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LVKC 148
           A+I+GF+  GD   A      M       D  + S L++ L +        ++   ++K 
Sbjct: 173 ALIAGFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKH 232

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
           G + D         N  I  Y Q G +E+A ++FD          G V   R++V+WNSM
Sbjct: 233 GVQFDN-----TVCNATITSYSQCGSLEDAERVFD----------GAVG-SRDLVTWNSM 276

Query: 209 IMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDT 264
           +  +       +A ++F  M     E D +++ T+IS   H  + +    L +K      
Sbjct: 277 LAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSHKDNGKSLHGLVIKRGLEQL 336

Query: 265 L-TWNAMVSGY--AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           +   NA+++ Y  +   ++E AL+ F  M  K+ VSWNS++ G       E A+KLF+ M
Sbjct: 337 VPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALKLFVHM 396

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAI 380
           +      D + FS++L   S +  L LG QIH +  K+       + ++LI MY++CG I
Sbjct: 397 RFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMI 456

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
            +AR  FE+     + ++WN+++   A HG    AL LF  MR  KV   +ITF++ L+A
Sbjct: 457 EDARKSFEKTAK-DSSITWNSIMFAYAQHGQGDVALGLFFQMRDKKVKMDHITFVAALTA 515

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C+H GLVE+GR   KSM ++YGI PR+EH+A  VD+ GR G L++A  LI+ MPF+PD  
Sbjct: 516 CSHIGLVEQGRYLLKSMASDYGISPRMEHYACAVDLFGRAGYLDEAKALIESMPFDPDAM 575

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
           VW  LLGACR   ++ELA   A  L+++EPE    YV+L NMY  + RWD+   +  LM+
Sbjct: 576 VWKTLLGACRACGDIELAAQVASHLLELEPEEHCTYVILSNMYGHLKRWDEKACMARLMR 635

Query: 561 SNNIKKPTGYSWVD 574
              +KK  G+SW++
Sbjct: 636 ERKVKKVPGWSWIE 649



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 124/265 (46%), Gaps = 15/265 (5%)

Query: 262 PDTLTWNAMVSGYAQI--GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
            D    N ++S Y +   G L  A + F  M  ++ V+WN+MI+G   +     A +L+ 
Sbjct: 32  ADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSGSLGSAWELYK 91

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCG 378
            M+  G  PD +TF SIL   +    L +G Q+H ++ K    + V   +AL+ MYA+C 
Sbjct: 92  SMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKCE 151

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
            + +A ++F+ +   +N VSWNA+I G    G    A  L + M    V     TF  +L
Sbjct: 152 RVRDAFMVFKCIP-RRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLL 210

Query: 439 SACAHAGLVEEGRQHFKSM-----VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           +      L++E + +  +M     + ++G++       + +    + G LEDA  +  G 
Sbjct: 211 T------LLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVFDGA 264

Query: 494 PFEPDKAVWGALLGACRVHNNVELA 518
               D   W ++L A   H+  E A
Sbjct: 265 VGSRDLVTWNSMLAAFLAHDRKETA 289


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 210/629 (33%), Positives = 344/629 (54%), Gaps = 77/629 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-------D 53
           +++ Y    +++ +R  FD++PQ+DV +WN MIS Y+    +G   EA   F       +
Sbjct: 157 LVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH---NGHFHEAIGCFYQLLLVSE 213

Query: 54  IMPE--------RDCVT-----------------WNTVISG-----YAKTGEMEEALRLF 83
           I P+        + C T                 WN  ++      Y++ G    A  LF
Sbjct: 214 IRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 273

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFD--RMPG--RDSASLSALVSGLIQNGELD 139
           + MP R++ SWNAMISG +QNG+ A A++  D  R+ G   +  ++ +++    Q G++ 
Sbjct: 274 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIS 333

Query: 140 EAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            A  +   ++K G   D     +   N LI  Y + G +E+ARK F ++           
Sbjct: 334 TAMLIHLYVIKHGLEFD-----LFVSNALINMYAKFGNLEDARKAFQQM----------- 377

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA 252
            F  ++VSWNS+I  Y +  D V+A   F +M     + D  +  ++ S      D + +
Sbjct: 378 -FITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNS 436

Query: 253 SNL--FVKMP---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
            ++  F+        D +  NA+V  YA++G L+ A   F+ +P K+++SWN++I G   
Sbjct: 437 RSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQ 496

Query: 308 NKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVP 365
           N     AI+++  M+   E  P++ T+ SIL   + +  L  GM+IH  V KT +  DV 
Sbjct: 497 NGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVF 556

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           +   LI +Y +CG +V+A  +F ++   ++ V+WNA+I     HG A + L+LF  M   
Sbjct: 557 VATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDE 615

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            V P ++TF+S+LSAC+H+G VEEG+  F+ M  EYGI+P ++H+  +VD++GR G LE 
Sbjct: 616 GVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEM 674

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A D IK MP +PD ++WGALLGACR+H N+EL + A++ L +V+ +N   YVLL N+YA+
Sbjct: 675 AYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYAN 734

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           VG+W+  ++VR L +   +KK  G+S ++
Sbjct: 735 VGKWEGVDKVRSLARERGLKKTPGWSTIE 763


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 184/586 (31%), Positives = 312/586 (53%), Gaps = 88/586 (15%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR--- 120
           N ++  Y+K G+++E  +LF  M  R+V+SWN MIS ++  G    A++ FD M      
Sbjct: 172 NNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVL 231

Query: 121 -DSASLSALVSGLIQNGELDEAARVLV----------------------KCG-------- 149
            D  ++ +LVS   +  +L+   R+ +                      KCG        
Sbjct: 232 PDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGL 291

Query: 150 -SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
            SRCD  E  V  + TL+ GY +  ++++AR+LFDK+             +R++VSW +M
Sbjct: 292 LSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMN------------ERSLVSWTTM 339

Query: 209 IMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLD---------------- 248
           +  Y + G    + E+F+QM    +  D  +  T++S  +H+ D                
Sbjct: 340 MSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGM 399

Query: 249 -------------------MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKR 289
                              ++EA   F ++P     +WN+M+ G+ + G ++ A DFF +
Sbjct: 400 LVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNK 459

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
           +P+K++VSWN+M+     +  +  + ++F +MQ    KPD+ T  S+LS  + +  L+ G
Sbjct: 460 IPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHG 519

Query: 350 MQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           + ++  + K  I  D  +  ALI MY +CG +  A  IF ++ + KNV  W AM+   A 
Sbjct: 520 IWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQI-IEKNVFVWTAMMAAYAM 578

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
            G A EA++L+  M    V P ++TFI++L+AC+H GLV+EG ++F  + + Y I P I 
Sbjct: 579 EGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIH 638

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528
           H+  +VD++GR G LE+ +  I+ MP EPD ++W +L+ ACR H+NVELA+ A + L+++
Sbjct: 639 HYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEI 698

Query: 529 EPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +P N+  +VLL N+YAD GRWDD ++VR  +    + K  G++ ++
Sbjct: 699 DPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIE 744



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 129/508 (25%), Positives = 219/508 (43%), Gaps = 103/508 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           MIS YV +    +A  LFDEM    V+   + +   +S+                     
Sbjct: 205 MISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNK 264

Query: 40  ---RGS------------GFLEEARYLFDIMPER--DCVTWNTVISGYAKTGEMEEALRL 82
              RGS            G ++EA  L     E   D V W T++SGY K+ ++++A +L
Sbjct: 265 LWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQL 324

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGEL 138
           F+ M  R++VSW  M+SG++Q G    ++E F +M       D  +L  ++S  +   + 
Sbjct: 325 FDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDF 384

Query: 139 DEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           D    V   +V  G   DG        N L+  Y + G+++EA + F+++P         
Sbjct: 385 DLGRSVHAFIVTYGMLVDGFLG-----NALLDLYAKCGKLDEALRTFEQLPC-------- 431

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
               ++  SWNSM+  + ++G V  AR+ F ++ E+D  SWNTM++ Y+      E+  +
Sbjct: 432 ----KSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEI 487

Query: 256 FVKMP----HPDTLT------------------W-----------------NAMVSGYAQ 276
           F KM      PD  T                  W                  A++  Y +
Sbjct: 488 FCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGK 547

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            G +E+A + F ++ +KN+  W +M+A          AI L+++M+  G KPD  TF ++
Sbjct: 548 CGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIAL 607

Query: 337 LSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           L+  S  G+VD              +IP +     ++ +  R G + E     E M +  
Sbjct: 608 LAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEP 667

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSM 422
           +V  W++++  C SH     A + FK +
Sbjct: 668 DVSIWSSLMRACRSHHNVELAEQAFKQL 695



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 131/510 (25%), Positives = 233/510 (45%), Gaps = 63/510 (12%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV----SWNAMISG 100
           L+ A  +     E + + WNT++    K G  +E L  +  M  + V+    +++ +I  
Sbjct: 83  LDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHA 142

Query: 101 FLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
             +N DV    E   R+     GR+ +  + L+    + G+L E  ++  K   R     
Sbjct: 143 CCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHR----- 197

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D++ ++NT+I  Y  +G   EA  LFD++ V+     G +  +  +V   S++   AK  
Sbjct: 198 DVI-SWNTMISCYVLKGMYREALDLFDEMLVS-----GVLPDEITMV---SLVSTCAKLK 248

Query: 217 DVVSAREIFEQMLERDTFS----WNTMISGYIHVLDMEEASNLFVKMPHP--DTLTWNAM 270
           D+   + +   +++   +      N ++  Y     M+EA  L  +      D + W  +
Sbjct: 249 DLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTL 308

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
           VSGY +   ++ A   F +M +++LVSW +M++G      Y  +++LF QM+ E   PD 
Sbjct: 309 VSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDE 368

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEE 389
               ++LS    + D  LG  +H  +VT  ++ D  + NAL+ +YA+CG + EA   FE+
Sbjct: 369 VALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQ 428

Query: 390 MKLL------------------------------KNVVSWNAMIGGCASHGFATEALELF 419
           +                                 K++VSWN M+     H    E+ E+F
Sbjct: 429 LPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIF 488

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGR-QHFKSMVNEYGIEPRIEHFASLVDIVG 478
             M+S  V P   T IS+LS+CA  G +  G   +     NE GI+  +    +L+D+ G
Sbjct: 489 CKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLG--TALIDMYG 546

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           + G +E A ++   +  E +  VW A++ A
Sbjct: 547 KCGCVEMAYEIFTQI-IEKNVFVWTAMMAA 575



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 137/295 (46%), Gaps = 17/295 (5%)

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA----IKLFIQMQVEGEKPDRHT 332
           + NL+ A        +   + WN+++     NK  EG     ++ +  M  +G   D  T
Sbjct: 80  VNNLDCAHQILSYSHEPESIIWNTLLE----NKLKEGCPQEVLECYYHMVTQGVLLDIST 135

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMK 391
           F  ++       D+ LG ++H  + K     +  +NN L+ +Y++CG + E   +FE+M 
Sbjct: 136 FHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMT 195

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG- 450
             ++V+SWN MI      G   EAL+LF  M    VLP  IT +S++S CA    +E G 
Sbjct: 196 -HRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGK 254

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI-KGMPFEPDKAVWGALLGAC 509
           R H   + N+  I   +     LVD+  + G++++A  L+ +    E D  +W  L+   
Sbjct: 255 RLHLYIVDNKLWIRGSL--LNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGY 312

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
              N ++ A+   +   K+   +   +  + + Y   G + ++ E+   M+  N+
Sbjct: 313 VKSNKIDKAR---QLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENV 364


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 202/629 (32%), Positives = 324/629 (51%), Gaps = 76/629 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +I+ Y++      A ++F +MP RD V++N +ISG+      G  E A  +F+ M     
Sbjct: 184 VITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQC---GHGEHALEIFEEMQFSGL 240

Query: 57  ERDCVTWNTVISG-----------------------------------YAKTGEMEEALR 81
             DCVT +++++                                    Y K G++E AL 
Sbjct: 241 SPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALV 300

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +FNS    NVV WN M+  F Q  D+A + E F +M       +  +   ++       E
Sbjct: 301 IFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTRE 360

Query: 138 LDEAARVL---VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           +D   ++    VK G   D     +     LI  Y + G +E+AR++ + +         
Sbjct: 361 IDLGEQIHSLSVKTGFESD-----MYVSGVLIDMYSKYGWLEKARRVLEMLK-------- 407

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMISGYIHVLDME 250
               ++++VSW SMI  Y +      A   F++M +     D     + ISG   +  M 
Sbjct: 408 ----EKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMR 463

Query: 251 EA----SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           +     + ++V     D   WNA+V+ YA+ G +  A   F+ M  K+ ++ N +++G  
Sbjct: 464 QGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFA 523

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVP 365
            +  +E A+K+F++M   G K +  TF S LS S+ + ++  G QIH  V KT    +  
Sbjct: 524 QSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETE 583

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           + NALI++Y +CG+  +A++ F EM   +N VSWN +I  C+ HG   EAL+LF  M+  
Sbjct: 584 VGNALISLYGKCGSFEDAKMEFSEMSE-RNEVSWNTIITSCSQHGRGLEALDLFDQMKKE 642

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            + P  +TFI VL+AC+H GLVEEG  +FKSM +EYGI PR +H+A ++DI GR G+L+ 
Sbjct: 643 GIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDR 702

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A   I+ MP   D  VW  LL AC+VH N+E+ + AA+ L+++EP +S  YVLL N YA 
Sbjct: 703 AKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAV 762

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             +W + ++VR +M+   ++K  G SW++
Sbjct: 763 TEKWANRDQVRKMMRDRGVRKEPGRSWIE 791



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 154/553 (27%), Positives = 244/553 (44%), Gaps = 105/553 (18%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
           +  N +I  Y+K G +  A R+F  + AR+ VSW AM+SG+ QNG    A+  + +M   
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 118 -----PGRDSASLSALVSG-LIQNGELDEAA-----------------RVLVKCGS---- 150
                P   S+ LS+     L   G L  A                   + ++CGS    
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLA 197

Query: 151 ---RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV-----NC------------- 189
               CD        +NTLI G+ Q G  E A ++F+++       +C             
Sbjct: 198 ERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASL 257

Query: 190 -DRGEG----NVRFKRNIVS----WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            D  +G    +  FK  I S      S++  Y K GDV +A  IF      +   WN M+
Sbjct: 258 GDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLML 317

Query: 241 SGYIHVLDMEEASNLFVKMP----HPDTLTWNAM-------------------------- 270
             +  + D+ ++  LF +M      P+  T+  +                          
Sbjct: 318 VAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFE 377

Query: 271 ----VSG-----YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
               VSG     Y++ G LE A    + + +K++VSW SMIAG   ++  + A+  F +M
Sbjct: 378 SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEM 437

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAI 380
           Q  G  PD    +S +S  +GI  +  G+QIH ++       DV I NAL+ +YARCG I
Sbjct: 438 QKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRI 497

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
            EA   FEEM+ LK+ ++ N ++ G A  G   EAL++F  M    V     TF+S LSA
Sbjct: 498 REAFSSFEEME-LKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSA 556

Query: 441 CAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
            A+   +++G+Q H + +   +  E  + +  +L+ + G+ G  EDA      M  E ++
Sbjct: 557 SANLAEIKQGKQIHARVIKTGHSFETEVGN--ALISLYGKCGSFEDAKMEFSEMS-ERNE 613

Query: 500 AVWGALLGACRVH 512
             W  ++ +C  H
Sbjct: 614 VSWNTIITSCSQH 626



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 173/384 (45%), Gaps = 50/384 (13%)

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDME 250
           RG G  R   N+     +I  Y+K G V+ AR +FE++  RD  SW  M+SGY      E
Sbjct: 71  RGLGKYRIVGNL-----LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGE 125

Query: 251 EASNLFVKM------PHPDTLT---------------------------------WNAMV 271
           EA  L+ +M      P P  L+                                  NA++
Sbjct: 126 EALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVI 185

Query: 272 SGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
           + Y + G+  LA   F  MP ++ V++N++I+G       E A+++F +MQ  G  PD  
Sbjct: 186 TLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCV 245

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEM 390
           T SS+L+  + + DL  G Q+H  + K  I  D  +  +L+ +Y +CG +  A +IF   
Sbjct: 246 TISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
               NVV WN M+          ++ ELF  M++  + P   T+  +L  C     ++ G
Sbjct: 306 D-RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG 364

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
            Q   S+  + G E  +     L+D+  ++G LE A  +++ M  E D   W +++    
Sbjct: 365 EQ-IHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAGYV 422

Query: 511 VHNNVELAQVAAEALMK--VEPEN 532
            H   + A  A + + K  + P+N
Sbjct: 423 QHECCKDALAAFKEMQKCGIWPDN 446


>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 542

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 183/514 (35%), Positives = 280/514 (54%), Gaps = 52/514 (10%)

Query: 67  ISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DS 122
           +S    +G M+ A +LF  +   ++  WN MI G  Q    A A+  + +M  R    D 
Sbjct: 54  VSAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDK 113

Query: 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
            + S                 VL  C              + + +G+G  G+V ++    
Sbjct: 114 FTFSF----------------VLKACTK-----------LSWVKLGFGIHGKVLKSG--- 143

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
                          F+ N    N++I  +A  GD+ +AR +F+   +R+   W+ + +G
Sbjct: 144 ---------------FQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAG 188

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
           Y     ++ A  LF +MP  D ++WN M++ YA+ G +E A   F  +P+K++V+WN+MI
Sbjct: 189 YARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMI 248

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP 362
           AG   ++  + A+++F  M+  G++PD  T  SILS S+ + DL +G +IH+ +      
Sbjct: 249 AGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCG 308

Query: 363 D--VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
           D  V ++NALI MYA+CG+I  A  +F+ M+  K+  SWN++IGG A HG A E++ LF+
Sbjct: 309 DLSVLLSNALIDMYAKCGSIGNALEVFQGMRK-KDTSSWNSIIGGLALHGHAEESINLFQ 367

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M   K+ P  ITF++VL AC+HAG V EGR +F  M N + IEP I+H+  +VDI+GR 
Sbjct: 368 EMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRA 427

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G L +A D I  M  EP+  +W  LLGACRVH +VEL + A E L+K+  + S  YVLL 
Sbjct: 428 GLLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRKDESGDYVLLS 487

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N+YA  G WD   +VR LM    +KK  G+S +D
Sbjct: 488 NIYASQGEWDGVQKVRKLMDDGGVKKKVGHSLID 521



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 159/317 (50%), Gaps = 30/317 (9%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++A AR LFD   +R+VV W+ + +GY + RG   L+ AR LFD MP +D V+WN +I+ 
Sbjct: 163 DLATARALFDASAKREVVPWSALTAGY-ARRGK--LDVARQLFDEMPMKDLVSWNVMITA 219

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASL 125
           YAK GEME+A +LF+ +P ++VV+WNAMI+G++ +     A+E FD M       D  ++
Sbjct: 220 YAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTM 279

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
            +++S     G+L+   ++       C G   ++ + N LI  Y + G +  A ++F  +
Sbjct: 280 LSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLS-NALIDMYAKCGSIGNALEVFQGM 338

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMIS 241
                        K++  SWNS+I   A  G    +  +F++ML    + +  ++  ++ 
Sbjct: 339 R------------KKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLV 386

Query: 242 GYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNL 295
              H   + E    F  M +     P+   +  MV    + G L  A DF   M  + N 
Sbjct: 387 ACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNA 446

Query: 296 VSWNSMIAGCETNKDYE 312
           + W +++  C  + D E
Sbjct: 447 IIWRTLLGACRVHGDVE 463



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 164/330 (49%), Gaps = 31/330 (9%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G L  AR LFD   +R+ V W+ + +GYA+ G+++ A +LF+ MP +++VSWN MI+ + 
Sbjct: 162 GDLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAYA 221

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLI---QNGELDEAARVLVKCGSRCDGGEDLV 159
           ++G++  A + FD +P +D  + +A+++G +    N E  E    +   G R D    L 
Sbjct: 222 KHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTML- 280

Query: 160 RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVV 219
               +++      G +E  +K+   I   C    G++    +++  N++I  YAK G + 
Sbjct: 281 ----SILSASADLGDLEIGKKIHRSIFDMC---CGDL----SVLLSNALIDMYAKCGSIG 329

Query: 220 SAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYA 275
           +A E+F+ M ++DT SWN++I G       EE+ NLF +M      P+ +T+ A++   +
Sbjct: 330 NALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACS 389

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ-------MQVEGEKP 328
             G +     +F  M     +  N    GC    D  G   L I+       M++E   P
Sbjct: 390 HAGKVREGRMYFNLMKNVFKIEPNIKHYGCMV--DILGRAGLLIEAFDFIDTMEIE---P 444

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           +   + ++L       D+ LG + ++ + K
Sbjct: 445 NAIIWRTLLGACRVHGDVELGRRANEQLLK 474



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 137/289 (47%), Gaps = 69/289 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           + +GY +R ++  AR+LFDEMP +D+VSWNVMI+ Y      G +E+AR LFD +P++D 
Sbjct: 185 LTAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAYAK---HGEMEKARKLFDEVPKKDV 241

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMP--------------------------------- 87
           VTWN +I+GY  +   +EAL +F++M                                  
Sbjct: 242 VTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRS 301

Query: 88  -------ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
                    +V+  NA+I  + + G + NA+E F  M  +D++S ++++ GL  +G  +E
Sbjct: 302 IFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEE 361

Query: 141 AARVLVKCGSRCDGGEDLVR--------AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           +  +           ++++R         +  ++V     G+V E R  F+ +       
Sbjct: 362 SINLF----------QEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLM------- 404

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LERDTFSWNTMI 240
           +   + + NI  +  M+    +AG ++ A +  + M +E +   W T++
Sbjct: 405 KNVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLL 453


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 210/684 (30%), Positives = 334/684 (48%), Gaps = 127/684 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K   ++ A+K+F+ +  RD VSW  MISG      +G+ EEA  LF  +    C
Sbjct: 205 LIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGL---SQNGYEEEAMLLFCQIVLSAC 261

Query: 61  V-------------------------TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWN 95
                                       N +++ Y+++G +  A ++F+ M  R+ VS+N
Sbjct: 262 TKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYN 321

Query: 96  AMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDEAARV---LVKC 148
           ++ISG  Q G +  A+  F +M       D  ++++L+S     G L    +     +K 
Sbjct: 322 SLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKA 381

Query: 149 GSRCD---GGEDL--------VRAYNTLIVGYGQRGRVEEARKLFDKIPV---------- 187
           G   D    G  L        ++  +   + YGQ   + ++ ++F ++ +          
Sbjct: 382 GMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTY 441

Query: 188 -----NC------DRGEG------NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
                 C      D GE          F+ N+   + +I  YAK G +  A +IF ++ E
Sbjct: 442 PSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKE 501

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMP------------------------------ 260
            D  SW  MI+GY       EA NLF +M                               
Sbjct: 502 NDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQI 561

Query: 261 --------HPDTLTW-NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
                   + D L+  NA+VS YA+ G +  A   F ++  K+ VSWNS+++G   +  +
Sbjct: 562 HAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYF 621

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNAL 370
           E A+ +F QM   G + +  TF S +S ++ I ++ +G QIH M+ KT    +  ++NAL
Sbjct: 622 EEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNAL 681

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           IT+YA+CG I +              +SWN+MI G + HG   EAL+LF+ M+   VLP 
Sbjct: 682 ITLYAKCGTIDD--------------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPN 727

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
           ++TF+ VLSAC+H GLV+EG  +F+SM   + + P+ EH+A +VD++GR G L  A   +
Sbjct: 728 HVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFV 787

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           + MP +PD  VW  LL AC VH N+++ + AA  L+++EP++S  YVL+ NMYA  G+WD
Sbjct: 788 EEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWD 847

Query: 551 DANEVRLLMKSNNIKKPTGYSWVD 574
             +  R +MK   +KK  G SWV+
Sbjct: 848 CRDRTRQMMKDRGVKKEPGRSWVE 871



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 154/600 (25%), Positives = 255/600 (42%), Gaps = 124/600 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSR-------------------- 40
           +I  Y+   ++  A  +FDEMP R +  WN + + +I+ R                    
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 41  ----------GSGFLEEARYLFDIMP-------ERDCVTWNTVISGYAKTGEMEEALRLF 83
                      SG     R++  I         E      N +I  Y K G +  A ++F
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 84  NSMPARNVVSWNAMISGFLQNG--------------DVANAIEFFD---RMPG------- 119
            ++ AR+ VSW AMISG  QNG                   +EFF+   ++ G       
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGF 282

Query: 120 -RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
             ++   +ALV+   ++G L  A ++       C    D V +YN+LI G  Q+G +  A
Sbjct: 283 SSETYVCNALVTLYSRSGNLSSAEQIF-----HCMSQRDRV-SYNSLISGLAQQGYINRA 336

Query: 179 RKLFDKIPVNCDRGEG---------------------------NVRFKRNIVSWNSMIMC 211
             LF K+ ++C + +                                  +IV   S++  
Sbjct: 337 LALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDL 396

Query: 212 YAKAGDVVSARE----------------IFEQM----LERDTFSWNTMISGYIHVLDMEE 251
           Y K  D+ +A E                IF QM    +  + F++ +++     +   + 
Sbjct: 397 YVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDL 456

Query: 252 ASNLFVKMPHPDTLTWNAMVSG-----YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
              +  ++       +N  VS      YA+ G L+ AL  F+R+ + ++VSW +MIAG  
Sbjct: 457 GEQIHTQVLKTG-FQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYT 515

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVP 365
            +  +  A+ LF +MQ +G K D   F+S +S  +GI  L  G QIH Q        D+ 
Sbjct: 516 QHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLS 575

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           I NAL+++YARCG + EA   F+++   K+ VSWN+++ G A  G+  EAL +F  M   
Sbjct: 576 IGNALVSLYARCGKVREAYAAFDQI-YAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKA 634

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            +     TF S +SA A+   V  G+Q    M+ + G +   E   +L+ +  + G ++D
Sbjct: 635 GLEINSFTFGSAVSAAANIANVRIGKQ-IHGMIRKTGYDSETEVSNALITLYAKCGTIDD 693



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 140/520 (26%), Positives = 227/520 (43%), Gaps = 89/520 (17%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM-------- 117
           +I  Y   G++  A+ +F+ MP R++  WN + + F+    +      F RM        
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 118 ------------------------------PGRDSASL--SALVSGLIQNGELDEAARVL 145
                                          G +S++   + L+    +NG L  A +V 
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN-CDRGE---------GN 195
               +R     D V ++  +I G  Q G  EEA  LF +I ++ C + E         G 
Sbjct: 223 ENLKAR-----DSV-SWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGL 276

Query: 196 VR---FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
           V    F       N+++  Y+++G++ SA +IF  M +RD  S+N++ISG      +  A
Sbjct: 277 VLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRA 336

Query: 253 SNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV-------SWNSM 301
             LF KM      PD +T  +++S  A +G L     F     +  +        S   +
Sbjct: 337 LALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDL 396

Query: 302 IAGCETNK-------------DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
              C   K             +   + ++F QMQ+EG  P++ T+ SIL   + +    L
Sbjct: 397 YVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDL 456

Query: 349 GMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G QIH  V KT    +V +++ LI MYA+ G +  A  IF  +K   +VVSW AMI G  
Sbjct: 457 GEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK-ENDVVSWTAMIAGYT 515

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPR 466
            H   TEAL LFK M+   +    I F S +SACA    +++GRQ H +S ++ Y  +  
Sbjct: 516 QHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLS 575

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           I +  +LV +  R G++ +A      + +  D   W +L+
Sbjct: 576 IGN--ALVSLYARCGKVREAYAAFDQI-YAKDNVSWNSLV 612


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 219/710 (30%), Positives = 337/710 (47%), Gaps = 137/710 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS-SRGSG----FLEEAR------ 49
           +++ Y K      A K+F E+P+RDVVSW  +I+G+++   GSG    F E  R      
Sbjct: 169 LVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEAN 228

Query: 50  ------------------YLFDIMPE-------RDCVTWNTVISGYAKTGEMEEALRLFN 84
                             +   +  E        D    + ++  YAK GEM  A R+F 
Sbjct: 229 EFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFL 288

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNG---- 136
            MP +N VSWNA+++GF Q GD    +  F RM G +      +LS ++ G   +G    
Sbjct: 289 CMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRA 348

Query: 137 -------------ELDEAARVLV-----KCGSRCDGGEDLVR-------AYNTLIVGYGQ 171
                        ELDE     +     KCG   D  +  VR       +++ +I    Q
Sbjct: 349 GQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQ 408

Query: 172 RGRVEEARKLFDK------IP--------VNCDRGEGNVRFKRNI-------------VS 204
           +G+  EA ++F +      IP        V+     G++ +  +I               
Sbjct: 409 KGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTV 468

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP---- 260
            N+++  Y K G V     +FE    RD  SWN ++SG+      +    +F +M     
Sbjct: 469 CNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGF 528

Query: 261 HPDTLTW-----------------------------------NAMVSGYAQIGNLELALD 285
           +P+  T+                                    A+V  YA+   LE A  
Sbjct: 529 NPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAET 588

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F R+ +++L +W  ++AG   +   E A+K FIQMQ EG KP+  T +S LS  S I  
Sbjct: 589 IFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIAT 648

Query: 346 LHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           L  G Q+H M  K     D+ + +AL+ MYA+CG + +A ++F+ + + ++ VSWN +I 
Sbjct: 649 LDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL-VSRDTVSWNTIIC 707

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           G + HG   +AL+ F++M     +P  +TFI VLSAC+H GL+EEG++HF S+   YGI 
Sbjct: 708 GYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGIT 767

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           P IEH+A +VDI+GR G+  +    I+ M    +  +W  +LGAC++H N+E  + AA  
Sbjct: 768 PTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMK 827

Query: 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           L ++EPE  + Y+LL NM+A  G WDD   VR LM +  +KK  G SWV+
Sbjct: 828 LFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVE 877



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 142/574 (24%), Positives = 247/574 (43%), Gaps = 115/574 (20%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D   WN++++ YAK G    A ++F  +P R+VVSW A+I+GF+  G  + A+  F  M 
Sbjct: 162 DSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMR 221

Query: 119 --------------------------GR----------DSASL---SALVSGLIQNGELD 139
                                     G+          D + L   SALV    + GE+ 
Sbjct: 222 REGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMV 281

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP---VNCDR----- 191
            A RV +     C   ++ V ++N L+ G+ Q G  E+   LF ++    +N  +     
Sbjct: 282 LAERVFL-----CMPKQNAV-SWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLST 335

Query: 192 ------GEGNVRFKRNIVSWNSMIMC-------------YAKAGDVVSAREIFEQMLERD 232
                   GN+R  + + S    I C             Y+K G    A ++F ++ + D
Sbjct: 336 VLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPD 395

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHP------------------------------ 262
             SW+ +I+         EA+ +F +M H                               
Sbjct: 396 VVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHA 455

Query: 263 ---------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
                    D    NA+V+ Y +IG+++     F+    ++L+SWN++++G   N+  + 
Sbjct: 456 CVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDT 515

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALIT 372
            +++F QM  EG  P+ +TF SIL   S + D+ LG Q+H Q+V  ++  +  +  AL+ 
Sbjct: 516 GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVD 575

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MYA+   + +A  IF  + + +++ +W  ++ G A  G   +A++ F  M+   V P   
Sbjct: 576 MYAKNRFLEDAETIFNRL-IKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEF 634

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           T  S LS C+    ++ GRQ   SM  + G    +   ++LVD+  + G +EDA  +  G
Sbjct: 635 TLASSLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDG 693

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALM 526
           +    D   W  ++     H     A  A EA++
Sbjct: 694 L-VSRDTVSWNTIICGYSQHGQGGKALKAFEAML 726



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 134/249 (53%), Gaps = 8/249 (3%)

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
           +PD+  WN++V+ YA+ G+   A   F  +P++++VSW ++I G        GA+ LF +
Sbjct: 160 NPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCE 219

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV-IPDVPINNALITMYARCGA 379
           M+ EG + +  T+++ L   S  +DL  G Q+H    K     D+ + +AL+ +YA+CG 
Sbjct: 220 MRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGE 279

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           +V A  +F  M   +N VSWNA++ G A  G A + L LF  M   ++  +  T  +VL 
Sbjct: 280 MVLAERVFLCMP-KQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLK 338

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS--LVDIVGRHGRLEDAMDLIKGMPFEP 497
            CA++G +  G Q   S+    G E  ++ F S  LVD+  + G   DA+ +   +  +P
Sbjct: 339 GCANSGNLRAG-QIVHSLAIRIGCE--LDEFISCCLVDMYSKCGLAGDALKVFVRIE-DP 394

Query: 498 DKAVWGALL 506
           D   W A++
Sbjct: 395 DVVSWSAII 403


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 201/624 (32%), Positives = 328/624 (52%), Gaps = 67/624 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ER 58
           +I  Y K  E+  AR+LFDE+ + D ++   M+SGY +   SG +  AR +F+  P   R
Sbjct: 55  LIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCA---SGDIALARSVFEETPVSMR 111

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNV----VSWNAMISGF------------- 101
           D V +N +I+G++   +   A+ LF  M          ++ ++++G              
Sbjct: 112 DTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQF 171

Query: 102 ----LQNG-----DVANAI------------------EFFDRMPGRDSASLSALVSGLIQ 134
               L++G      V+NA+                  + FD +P +D  S + +++G ++
Sbjct: 172 HAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVK 231

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           NG  D    +L       D    LV AYN +I GY   G  +EA ++  ++         
Sbjct: 232 NGCFDLGKELL----KGMDENMKLV-AYNAMISGYVNCGLYQEALEMVRRMV-------- 278

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW---NTMISGYIHVLDMEE 251
           +   + +  ++ S+I   A A  +   +++   +L R+ FS+   N++++ Y       E
Sbjct: 279 SSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDNSLVTLYYKCGKFNE 338

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           A  +F KMP  D ++WNA++SGY   G++  A   FK M +KN++SW  MI+G   N   
Sbjct: 339 ARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFG 398

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNAL 370
           E  +KLF  M+ EG +P  + FS  +   + +     G Q H Q+V       +   NAL
Sbjct: 399 EEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNAL 458

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           ITMYA+CG + EA+ +F  M  L + VSWNA+I     HG   EA+++++ M    + P 
Sbjct: 459 ITMYAKCGVVEEAQQVFRTMPCLDS-VSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPD 517

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            ITF++VL+AC+HAGLV++GR++F SM   Y I P  +H+A L+D++ R G+  +A  +I
Sbjct: 518 RITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESII 577

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           + +PF+P   +W ALL  CRVH N+EL  +AA+ L  + PE+   Y+LL NMYA  G+W+
Sbjct: 578 ESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWE 637

Query: 551 DANEVRLLMKSNNIKKPTGYSWVD 574
           +   VR LM+   +KK    SW++
Sbjct: 638 EVARVRKLMRDRGVKKEVACSWIE 661



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 226/490 (46%), Gaps = 31/490 (6%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--GRD 121
           N +I  Y K+ E++ A +LF+ +   + ++   M+SG+  +GD+A A   F+  P   RD
Sbjct: 53  NRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRD 112

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           +   +A+++G   N   D  + + + C  + +G +     Y +++ G      V++ ++ 
Sbjct: 113 TVMYNAMITGFSHNN--DGYSAINLFCKMKHEGFKPDDFTYASVLAGLAL--VVDDEKQC 168

Query: 182 FDKIPVNCDRGEGNVRFKRN-IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
                     G G V    N +VS  S   C +    + SAR++F+ + E+D  SW TM+
Sbjct: 169 VQFHAAALKSGAGYVTSVSNALVSVYS--RCASSPSLLHSARKVFDDIPEKDERSWTTMM 226

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNL---- 295
           +GY+     +    L   M     L  +NAM+SGY   G  + AL+  +RM    +    
Sbjct: 227 TGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDE 286

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM----Q 351
            ++ S+I  C        A  L +  QV      R  FS      + +V L+       +
Sbjct: 287 FTYPSVIRACAN------ARLLQLGKQVHAYVLRREDFS--FHFDNSLVTLYYKCGKFNE 338

Query: 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
              +  K    D+   NAL++ Y   G I EA++IF+EMK  KN++SW  MI G A +GF
Sbjct: 339 ARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMK-EKNILSWMIMISGLAENGF 397

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             E L+LF  M+     P    F   + +CA  G    G+Q F + + + G +  +    
Sbjct: 398 GEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQ-FHAQLVKIGFDSSLSAGN 456

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH-NNVELAQVAAEALMK-VE 529
           +L+ +  + G +E+A  + + MP   D   W AL+ A   H + VE   V  E L K + 
Sbjct: 457 ALITMYAKCGVVEEAQQVFRTMPC-LDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIR 515

Query: 530 PENSTPYVLL 539
           P+  T   +L
Sbjct: 516 PDRITFLTVL 525


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 215/653 (32%), Positives = 317/653 (48%), Gaps = 124/653 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           +I+ Y K   +  A  +FD +P ++ V+W  +I+GY                        
Sbjct: 155 LINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPD 214

Query: 37  ---ISSRGS-----GFLEEAR----YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
              ++S  S     GFLE  R    Y + I  E D    N +I  Y K   +  A +LF+
Sbjct: 215 RFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFD 274

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG---ELDEA 141
            M  RN+VSW  MI+G++QN   A A+  F ++                Q G   ++   
Sbjct: 275 CMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLS---------------QEGWQPDVFAC 319

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
           A +L  CGS                +    +GR   A      I  N +  E        
Sbjct: 320 ASILNSCGS----------------LAAIWQGRQVHAHA----IKANLESDE-------- 351

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
               NS+I  YAK   +  AR +FE + E D  S+N MI GY  + D+  A ++F KM +
Sbjct: 352 -YVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRY 410

Query: 262 ----PDTLTW-----------------------------------NAMVSGYAQIGNLEL 282
               P  LT+                                   ++++  Y++   +E 
Sbjct: 411 CSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVED 470

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F  M  +++V WN+MI G   N+  E A+KLF Q+QV G  P+  TF ++++++S 
Sbjct: 471 AKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVAST 530

Query: 343 IVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +V +  G Q H Q++      D  ++NALI MYA+CG I E R++FE   L K+V+ WN+
Sbjct: 531 LVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFES-TLGKDVICWNS 589

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI   A HG A EAL +F+ M    V P Y+TF+ VLSACAHAGLV+EG +HF  M  +Y
Sbjct: 590 MISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKY 649

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
            IEP  EH+AS+V++ GR G+L  A + I+ MP EP  AVW +LL AC +  NVE+ + A
Sbjct: 650 AIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFGNVEIGRYA 709

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            E  +  +P +S P VL+ N+YA  G W DA ++R  M    + K  GYSW++
Sbjct: 710 TEMALLADPADSGPSVLMSNIYASRGLWSDAQKLRQGMDCAGVVKEPGYSWIE 762



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 216/466 (46%), Gaps = 38/466 (8%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEF---FD 115
           D    N ++  Y+K G + +A RLF+ MP +N+VSW + IS   Q+G   +A+     F 
Sbjct: 45  DLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQ 104

Query: 116 RMPGRDSASLSALVSGLIQNGEL------DEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
           R  G ++ +   L S L    +        +   V V+ G   DG    V     LI  Y
Sbjct: 105 RASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIG--LDGN---VYVGTALINLY 159

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM- 228
            + G ++ A  +FD +PV            +N V+W ++I  Y++ G    A E+F +M 
Sbjct: 160 AKVGCIDAAMLVFDALPV------------KNPVTWTAVITGYSQIGQGGVALELFGKMG 207

Query: 229 ---LERDTFSWNTMISGYIHVLDMEEASNL----FVKMPHPDTLTWNAMVSGYAQIGNLE 281
              +  D F   + +S    +  +E         +      D    NA++  Y +   L 
Sbjct: 208 LDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLS 267

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
           LA   F  M  +NLVSW +MIAG   N     A+ +F Q+  EG +PD    +SIL+   
Sbjct: 268 LARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCG 327

Query: 342 GIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +  +  G Q+H    K  +  D  + N+LI MYA+C  + EAR +FE +    + +S+N
Sbjct: 328 SLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALA-EDDAISYN 386

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           AMI G +  G    A+++F  MR   + P+ +TF+S+L   +    +E  +Q    ++ +
Sbjct: 387 AMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQ-IHGLIVK 445

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            G    +   +SL+D+  +   +EDA  +   M    D  +W A++
Sbjct: 446 SGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLM-HNRDMVIWNAMI 490



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 116/244 (47%), Gaps = 23/244 (9%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA-----GCETNKDYEGAIK 316
           PD    N ++  Y+++G +  A   F RMP KNLVSW S I+     GCE     E A+ 
Sbjct: 44  PDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE-----EDAVA 98

Query: 317 LFIQMQVE--GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITM 373
           LF   Q    GE P+    +S L   +    +  G Q+H +  +  +  +V +  ALI +
Sbjct: 99  LFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINL 158

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           YA+ G I  A ++F+ +  +KN V+W A+I G +  G    ALELF  M    V P    
Sbjct: 159 YAKVGCIDAAMLVFDALP-VKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFV 217

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS----LVDIVGRHGRLEDAMDL 489
             S +SAC+  G +E GRQ      + Y     +E  AS    L+D+  +  RL  A  L
Sbjct: 218 LASAVSACSALGFLEGGRQ-----THGYAYRIAVETDASVINALIDLYCKCSRLSLARKL 272

Query: 490 IKGM 493
              M
Sbjct: 273 FDCM 276



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 5/153 (3%)

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
           V    +PD+ + N L+  Y++ G + +AR +F+ M   KN+VSW + I   A HG   +A
Sbjct: 38  VVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMP-HKNLVSWGSAISMHAQHGCEEDA 96

Query: 416 LELFKSMR--SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           + LF + +  S    P      S L ACA +  V  G+Q    +    G++  +    +L
Sbjct: 97  VALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQ-VHGVAVRIGLDGNVYVGTAL 155

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +++  + G ++ AM +   +P + +   W A++
Sbjct: 156 INLYAKVGCIDAAMLVFDALPVK-NPVTWTAVI 187


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 215/712 (30%), Positives = 337/712 (47%), Gaps = 163/712 (22%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           A + F  +P+ +V S+N  IS    +   G L  AR L   MP+R+ V+WNTVI+  A++
Sbjct: 64  ALRAFRALPRPNVYSYNAAISAACRA---GDLAAARDLLGRMPDRNAVSWNTVIAAVARS 120

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISG------------------------------FLQ 103
               EAL ++  M    +   N  ++                               F++
Sbjct: 121 DSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVE 180

Query: 104 NG---------DVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR----------- 143
           NG          VA+A+  FD M   +  S +A++ GL Q+G +D+A R           
Sbjct: 181 NGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIR 240

Query: 144 --------VLVKCGSRCDGGEDLVRA---------------------------------- 161
                   VL  C   C G  ++ RA                                  
Sbjct: 241 VDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGM 300

Query: 162 -------------------YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
                              +N L+ GYGQ G  E A ++ D +  +         F+ N 
Sbjct: 301 KMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQES--------GFEPNE 352

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH- 261
           V++++M+    KA DV SAR +F+++ +    +WNT++SGY      ++   LF +M H 
Sbjct: 353 VTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQ 412

Query: 262 ---PDTLTWNAMVSGYAQIGNLEL-----------------------------------A 283
              PD  T   ++S  +++G LEL                                   A
Sbjct: 413 NVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIA 472

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F  M ++++V WNSMI+G   +   E A   F QM+  G  P   +++S+++  + +
Sbjct: 473 QIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARL 532

Query: 344 VDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             +  G QIH  V K     +V + ++LI MYA+CG + +AR+ F  M ++KN+V+WN M
Sbjct: 533 SSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCM-IVKNIVAWNEM 591

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I G A +GF  +A+ELF+ M + K  P  +TFI+VL+ C+H+GLV+E   +F SM + YG
Sbjct: 592 IHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAIAYFNSMESNYG 651

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           I P +EH+  L+D +GR GR  + + +I  MP++ D  +W  LL AC VH+N EL + AA
Sbjct: 652 IRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAILWEVLLAACVVHHNAELGEFAA 711

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + L +++P+N +PYVLL N+YA +GR  DA+ VR LM S  + K  GYSWV+
Sbjct: 712 KHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVN 763



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 141/538 (26%), Positives = 237/538 (44%), Gaps = 118/538 (21%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D    N ++  Y+ +G    ALR F ++P  NV S+NA IS   + GD+A A +   RMP
Sbjct: 44  DTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAARDLLGRMP 103

Query: 119 GRDSASLSALVSGLIQNGELDEA-------------------ARVLVKCGS--------R 151
            R++ S + +++ + ++    EA                   A VL  CG+        R
Sbjct: 104 DRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRR 163

Query: 152 C---------DGGE-----------------DLVR-----------AYNTLIVGYGQRGR 174
           C         DG +                 D VR           ++  ++ G  Q G 
Sbjct: 164 CHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGA 223

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI---------- 224
           V++A +LF ++          +R     VS        A AGD   AR I          
Sbjct: 224 VDDALRLFARM------SRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALV 277

Query: 225 FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
             +  + D    N++I  Y   + M+EA  +F  M     ++WN +V+GY Q+G  E AL
Sbjct: 278 VRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERAL 337

Query: 285 D-----------------------------------FFKRMPQKNLVSWNSMIAGCETNK 309
           +                                    F ++ + ++ +WN++++G    +
Sbjct: 338 EVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEE 397

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINN 368
            ++  I+LF +MQ +  +PDR T + ILS  S +  L LG Q+H    K ++  D+ + +
Sbjct: 398 LHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVAS 457

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
            LI MY++CG +  A+IIF  M   ++VV WN+MI G A H    EA + FK MR   + 
Sbjct: 458 GLIDMYSKCGQVGIAQIIFNMMT-ERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMF 516

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           PT  ++ S++++CA    + +GRQ   + V + G +  +   +SL+D+  + G ++DA
Sbjct: 517 PTESSYASMINSCARLSSIPQGRQ-IHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDA 573



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 158/353 (44%), Gaps = 16/353 (4%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
           L  DTF  N ++  Y        A   F  +P P+  ++NA +S   + G+L  A D   
Sbjct: 41  LAADTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAARDLLG 100

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
           RMP +N VSWN++IA    +     A++++  M  EG  P   T +S+LS    +  L  
Sbjct: 101 RMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDD 160

Query: 349 GMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G + H +  K  +  +  + N L+ MY +CG++ +A  +F+ M    N VS+ AM+GG A
Sbjct: 161 GRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMS-SPNEVSFTAMMGGLA 219

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAH--AGLVEEGR-----QHFKSMVNE 460
             G   +AL LF  M    +    +   SVL ACA   AG     R     Q   ++V  
Sbjct: 220 QSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVR 279

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
            G +       SL+D+  +  ++++AM + + M        W  L+     +  +   + 
Sbjct: 280 KGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMS-SVSIVSWNILVTG---YGQLGCYER 335

Query: 521 AAEALMKVEPENSTPYVLLY-NMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
           A E L  ++     P  + Y NM A   +  D    R +   + I KP+  +W
Sbjct: 336 ALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMF--DKISKPSVTTW 386


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 205/623 (32%), Positives = 342/623 (54%), Gaps = 65/623 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           +++ Y    +++ +R  FD++ ++DV +WN MIS Y+ +                     
Sbjct: 114 LVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQA 173

Query: 40  ---------RGSGFLEEAR----YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSM 86
                    +    L + R    ++F +  + D     ++I  Y++ G +  A  LF+ M
Sbjct: 174 DFYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDM 233

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEAA 142
           P R++ SWNAMISG +QNG+ A A++  D M       DS ++++++    Q G++  A 
Sbjct: 234 PFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTAT 293

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
             L+       G E  +   N LI  Y + G + +A+K+F ++            F R++
Sbjct: 294 --LIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQM------------FLRDV 339

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVK 258
           VSWNS+I  Y +  D V+AR  F +M    LE D  +  ++ S      D + + ++   
Sbjct: 340 VSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGF 399

Query: 259 MPHPDTL-----TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
           +     L       NA++  YA++G ++ A   F  +P K++VSWN++I+G   N     
Sbjct: 400 IMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASE 459

Query: 314 AIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALI 371
           AI+++  M+   E K ++ T+ SIL+  + +  L  GM+IH  + KT +  DV +   LI
Sbjct: 460 AIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLI 519

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            +Y +CG +V+A  +F ++   ++ V WNA+I     HG   +AL+LF+ M+   V P +
Sbjct: 520 DLYGKCGRLVDAMCLFYQVPR-ESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDH 578

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           +TFIS+LSAC+H+GLV+EG+  F  M  EYGI+P ++H+  +VD++GR G LE A D IK
Sbjct: 579 VTFISLLSACSHSGLVDEGKWFFHLM-QEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIK 637

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
            MP  PD ++WGALLGACR+H N+EL + A++ L +V+ EN   YVLL N+YA+VG+W+ 
Sbjct: 638 DMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEG 697

Query: 552 ANEVRLLMKSNNIKKPTGYSWVD 574
            ++VR L +   +KK  G+S ++
Sbjct: 698 VDKVRSLARERGLKKTPGWSSIE 720


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 168/439 (38%), Positives = 260/439 (59%), Gaps = 26/439 (5%)

Query: 162 YNTLIVGYGQR---GRVEEARKLFDKIP----------VNCDRGEGNVRFK--------- 199
           YN L+ GY +    GR+ +AR+LFD IP          ++C    G++            
Sbjct: 41  YNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPV 100

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
           R++ SWN+M+   +K G +  A  +F  M  R+  SWN M++      DM  A NLF   
Sbjct: 101 RDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNA 160

Query: 260 PH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
           P   D + W AMVSGY   GN++ A+++F+ MP +NLVSWN+++AG   N     A+++F
Sbjct: 161 PEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVF 220

Query: 319 IQMQVEG-EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYAR 376
             M  +   +P+  T SS+L   S +  L  G Q+HQ   K  +   + +  +L++MY +
Sbjct: 221 KTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCK 280

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG + +A  +F+EM   K++V+WNAMI G A HG   +A++LF+ M+   V+P +IT ++
Sbjct: 281 CGDLDDACKLFDEMHT-KDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLA 339

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           VL+AC H GL + G Q F++M   Y IEP+++H++ +VD++ R G LE A+++I  MPFE
Sbjct: 340 VLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFE 399

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
           P  + +G LL ACRV+ N+E A+ AA  L++ +P+N+  YV L N+YA   RWDD + VR
Sbjct: 400 PHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVR 459

Query: 557 LLMKSNNIKKPTGYSWVDF 575
             MK N + K  GYSW++ 
Sbjct: 460 RWMKDNAVVKTPGYSWMEI 478



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 206/410 (50%), Gaps = 32/410 (7%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++A A + F     +   ++N +++GY  + G G L +AR LFD +P  D V++NT++S 
Sbjct: 22  DLAGAEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSC 81

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           +   G+++ A R+F++MP R+V SWN M+SG  +NG +  A   F  MP R++ S +A+V
Sbjct: 82  HFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMV 141

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           +    +G++  A  +      + D        +  ++ GY   G V++A + F  +PV  
Sbjct: 142 AARASSGDMGAAENLFRNAPEKTDA-----ILWTAMVSGYMDTGNVQKAMEYFRAMPV-- 194

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN--TMISGYIHVL 247
                     RN+VSWN+++  Y K      A  +F+ M+E      N  T+ S  +   
Sbjct: 195 ----------RNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCS 244

Query: 248 DM------EEASNLFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           ++       +     +K+P   ++T   +++S Y + G+L+ A   F  M  K++V+WN+
Sbjct: 245 NLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNA 304

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHLGMQIHQMVTK 358
           MI+G   +     AIKLF +M+ EG  PD  T  ++L+  + +G+ D   G+Q  + + +
Sbjct: 305 MISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCD--FGIQCFETMQE 362

Query: 359 T--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
              + P V   + ++ +  R G +  A  +   M    +  ++  ++  C
Sbjct: 363 AYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTAC 412



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 166/335 (49%), Gaps = 43/335 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-D 59
           M+SG  K   + +A  +F  MP R+ VSWN M++   S   SG +  A  LF   PE+ D
Sbjct: 109 MVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARAS---SGDMGAAENLFRNAPEKTD 165

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF----- 114
            + W  ++SGY  TG +++A+  F +MP RN+VSWNA+++G+++N    +A+  F     
Sbjct: 166 AILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVE 225

Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
           D +   + ++LS+++ G      L    +V   C     G    +    +L+  Y + G 
Sbjct: 226 DAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRS--ITVGTSLLSMYCKCGD 283

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
           +++A KLFD++              ++IV+WN+MI  YA+ G    A ++FE+M +    
Sbjct: 284 LDDACKLFDEM------------HTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVV 331

Query: 235 -SWNTM---ISGYIHV----------LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNL 280
             W T+   ++  IH             M+EA N+  ++ H     ++ MV    + G L
Sbjct: 332 PDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDH-----YSCMVDLLCRAGLL 386

Query: 281 ELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
           E A++    MP + +  ++ +++  C   K+ E A
Sbjct: 387 ERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFA 421


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 193/608 (31%), Positives = 303/608 (49%), Gaps = 79/608 (12%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER------ 58
           + K   +A AR +F EMP+RD VSW VM+ G   +R   F E  + L D+  +       
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGL--NRAGRFGEAIKTLLDMTADGFTPTQF 59

Query: 59  -------------------------------DCV-TWNTVISGYAKTGEMEEALRLFNSM 86
                                           CV   N+V++ Y K G+ E A  +F  M
Sbjct: 60  TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLV 146
           P R+V SWNAM+S     G +  A   F+ MP R   S +A+++G  QNG   +A ++  
Sbjct: 120 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFS 179

Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
           +         D      +++      G V   +++   I               N    N
Sbjct: 180 RMLHESSMAPDEF-TITSVLSACANLGNVRIGKQVHAYIL--------RTEMAYNSQVTN 230

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT 266
           ++I  YAK+G V +AR I +Q +E D                              + ++
Sbjct: 231 ALISTYAKSGSVENARRIMDQSMETDL-----------------------------NVIS 261

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
           + A++ GY +IG++E A + F  M  +++V+W +MI G E N   + AI LF  M   G 
Sbjct: 262 FTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGP 321

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARI 385
           +P+ +T +++LS+ + +  L  G QIH    ++++     ++NA+ITMYAR G+   AR 
Sbjct: 322 EPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARR 381

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F+++   K  ++W +MI   A HG   EA+ LF+ M    V P  IT++ VLSAC+HAG
Sbjct: 382 MFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAG 441

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
            V EG++++  + NE+ I P + H+A +VD++ R G   +A + I+ MP EPD   WG+L
Sbjct: 442 FVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSL 501

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           L ACRVH N ELA++AAE L+ ++P NS  Y  + N+Y+  GRW DA  +    K   ++
Sbjct: 502 LSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVR 561

Query: 566 KPTGYSWV 573
           K TG+SW 
Sbjct: 562 KETGFSWT 569



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 176/399 (44%), Gaps = 99/399 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           M+S       M  A  LF+ MP R +VSWN MI+GY     +G   +A  LF  M     
Sbjct: 130 MVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGY---NQNGLDAKALKLFSRMLHESS 186

Query: 56  --PERDCVT---------------------------------WNTVISGYAKTGEMEEAL 80
             P+   +T                                  N +IS YAK+G +E A 
Sbjct: 187 MAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENAR 246

Query: 81  RLFN-SMPAR-NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGEL 138
           R+ + SM    NV+S+ A++ G+++ GD+ +A E F  M  RD  + +A++ G  QNG  
Sbjct: 247 RIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRN 306

Query: 139 DEAA---RVLVKCG------------SRC------DGGEDL----VRAY--------NTL 165
           DEA    R ++ CG            S C      D G+ +    +R+         N +
Sbjct: 307 DEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAI 366

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           I  Y + G    AR++FD++   C        +++  ++W SMI+  A+ G    A  +F
Sbjct: 367 ITMYARSGSFPWARRMFDQV---C--------WRKETITWTSMIVALAQHGQGEEAVGLF 415

Query: 226 EQML----ERDTFSWNTMISGYIHVLDMEEASNLF--VKMPH---PDTLTWNAMVSGYAQ 276
           E+ML    E D  ++  ++S   H   + E    +  +K  H   P+   +  MV   A+
Sbjct: 416 EEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLAR 475

Query: 277 IGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
            G    A +F +RMP + + ++W S+++ C  +K+ E A
Sbjct: 476 AGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELA 514



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 137/557 (24%), Positives = 227/557 (40%), Gaps = 112/557 (20%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y K  +   A  +F+ MP R V SWN M+S    +   G ++ A  LF+ MP+R  V+WN
Sbjct: 103 YGKCGDSETATTVFERMPVRSVSSWNAMVS---LNTHLGRMDLAESLFESMPDRSIVSWN 159

Query: 65  TVISGYAKTGEMEEALRLFNSMP------------------------------------- 87
            +I+GY + G   +AL+LF+ M                                      
Sbjct: 160 AMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILR 219

Query: 88  ---ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD--SASLSALVSGLIQNGELDEAA 142
              A N    NA+IS + ++G V NA    D+    D    S +AL+ G ++ G+++ A 
Sbjct: 220 TEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAR 279

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
            +     +R     D+V A+  +IVGY Q GR +EA  LF  + + C   E N      +
Sbjct: 280 EMFGVMNNR-----DVV-AWTAMIVGYEQNGRNDEAIDLFRSM-ITCG-PEPNSYTLAAV 331

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP-H 261
           +S  + + C    G  +  R I   +LE+ +   N +I+ Y        A  +F ++   
Sbjct: 332 LSVCASLACL-DYGKQIHCRAI-RSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWR 389

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            +T+TW +M+   AQ G  E A+  F+ M          + AG E               
Sbjct: 390 KETITWTSMIVALAQHGQGEEAVGLFEEM----------LRAGVE--------------- 424

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGA 379
                 PDR T+  +LS  S    ++ G + +  +     + P++     ++ + AR G 
Sbjct: 425 ------PDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGL 478

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP----TYITFI 435
             EA+     M +  + ++W +++  C  H  A E  EL  + +   + P     Y    
Sbjct: 479 FSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNA-ELAEL-AAEKLLSIDPNNSGAYSAIA 536

Query: 436 SVLSAC---AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL--- 489
           +V SAC   + A  + + R+  K++  E G      H  S + + G    +    D    
Sbjct: 537 NVYSACGRWSDAARIWKARKE-KAVRKETGFS--WTHIRSKIHVFGADDVVHPQRDAVYA 593

Query: 490 --------IKGMPFEPD 498
                   IKG  F PD
Sbjct: 594 MAARMWEEIKGAGFVPD 610



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 142/314 (45%), Gaps = 41/314 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           ++ GYVK  +M  AR++F  M  RDVV+W  MI GY     +G  +EA  LF  M    P
Sbjct: 265 LLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY---EQNGRNDEAIDLFRSMITCGP 321

Query: 57  ERDCVTWNTVISGYAKTGEMEEA----LRLFNSMPARNVVSWNAMISGFLQNGDVANAIE 112
           E +  T   V+S  A    ++       R   S+  ++    NA+I+ + ++G    A  
Sbjct: 322 EPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARR 381

Query: 113 FFDRMPGR-DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA--------YN 163
            FD++  R ++ + ++++  L Q+G+ +EA  +           E+++RA        Y 
Sbjct: 382 MFDQVCWRKETITWTSMIVALAQHGQGEEAVGLF----------EEMLRAGVEPDRITYV 431

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
            ++      G V E ++ +D+I       +   +    +  +  M+   A+AG    A+E
Sbjct: 432 GVLSACSHAGFVNEGKRYYDQI-------KNEHQIAPEMSHYACMVDLLARAGLFSEAQE 484

Query: 224 IFEQM-LERDTFSWNTMISG---YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279
              +M +E D  +W +++S    + +    E A+   + +   ++  ++A+ + Y+  G 
Sbjct: 485 FIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGR 544

Query: 280 LELALDFFKRMPQK 293
              A   +K   +K
Sbjct: 545 WSDAARIWKARKEK 558



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 13/164 (7%)

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           M+A+ G + +AR +F EM   ++ VSW  M+ G    G   EA++    M +    PT  
Sbjct: 1   MFAKSGRLADARGVFAEMP-ERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQF 59

Query: 433 TFISVLSACA--HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
           T  +VLS+CA   AG V  GR+   S V + G+   +    S++++ G+ G  E A  + 
Sbjct: 60  TLTNVLSSCAVTQAGAV--GRK-VHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVF 116

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQV-AAEALMKVEPENS 533
           + MP     + W A+     V  N  L ++  AE+L +  P+ S
Sbjct: 117 ERMPVRSVSS-WNAM-----VSLNTHLGRMDLAESLFESMPDRS 154


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 213/615 (34%), Positives = 316/615 (51%), Gaps = 96/615 (15%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G L +AR  FD MP RDCV WN ++ GY K G++  A+RLF +M         A ++ F
Sbjct: 189 AGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACF 248

Query: 102 L-------------------------QNGDVANAI--------------EFFDRMPGRDS 122
           L                         Q   VAN +                F+ +P  D 
Sbjct: 249 LSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDL 308

Query: 123 ASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            + + ++SG +QNG LDEA  +   +++ G+R D    LV    +L+        +++ +
Sbjct: 309 VTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDS-VTLV----SLLPALTDLNGLKQGK 363

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           ++   I  NC      V     +VS  +++  Y K  DV +AR +++     D    +T+
Sbjct: 364 EVHGYIIRNC------VHMDAFLVS--ALVDIYFKCRDVRTARNLYDAARAIDVVIGSTV 415

Query: 240 ISGYIHVLDMEEASNLFVKMPH----PDTLTW---------------------------- 267
           ISGY+     E+A  +F  +      P+ +T                             
Sbjct: 416 ISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAY 475

Query: 268 -------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                  +A++  YA+ G L+L+   F +M  K+ V+WNSMI+    N + + A+ LF Q
Sbjct: 476 EGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQ 535

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGA 379
           M +EG K +  T SS LS  + +  ++ G +IH ++ K  I  D+   +ALI MYA+CG 
Sbjct: 536 MCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGN 595

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           +  A  +FE M   KN VSWN++I    +HG   E++     M+     P ++TF++++S
Sbjct: 596 MELALRVFEFMPD-KNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALIS 654

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           ACAHAGLVEEG Q F+ M  EY I PR+EHFA +VD+  R GRL+ A+  I  MPF+PD 
Sbjct: 655 ACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDA 714

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
            +WGALL ACRVH NVELA +A++ L K++P NS  YVL+ N+ A  GRWD  ++VR LM
Sbjct: 715 GIWGALLHACRVHRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLM 774

Query: 560 KSNNIKKPTGYSWVD 574
           K N I K  GYSWVD
Sbjct: 775 KDNKILKIPGYSWVD 789



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 214/458 (46%), Gaps = 37/458 (8%)

Query: 70  YAKTGEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGR 120
           Y       +A+ +F+++P   A + + WN +I GF   G  + A+ F+ +M      P  
Sbjct: 80  YVLARRFRDAVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSP 139

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D+ +L  +V      G +      LV   +R  G    V   + LI  Y   G + +AR 
Sbjct: 140 DAHTLPYVVKSCAALGAVSLGR--LVHRTARATGLASDVYVGSALIKMYSDAGLLRDARD 197

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            FD +P             R+ V WN M+  Y KAGDV  A  +F  M           +
Sbjct: 198 AFDGMP------------WRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATL 245

Query: 241 SGYIHVLDME-------EASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           + ++ V   E       +  +L VK     +    N ++S YA+   L+ A   F+ +P+
Sbjct: 246 ACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPR 305

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
            +LV+WN MI+GC  N   + A+ LF  M   G +PD  T  S+L   + +  L  G ++
Sbjct: 306 DDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEV 365

Query: 353 HQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H  + +  +  D  + +AL+ +Y +C  +  AR +++  + + +VV  + +I G   +G 
Sbjct: 366 HGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAI-DVVIGSTVISGYVLNGM 424

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHF 470
           + +AL++F+ +    + P  +T  SVL ACA    +  G++ H   + N Y  +  +E  
Sbjct: 425 SEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVE-- 482

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           ++L+D+  + GRL+ +  +   M  + D+  W +++ +
Sbjct: 483 SALMDMYAKCGRLDLSHYIFSKMSLK-DEVTWNSMISS 519



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 138/546 (25%), Positives = 220/546 (40%), Gaps = 137/546 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSG---- 43
           +I  Y     +  AR  FD MP RD V WNVM+ GYI +             R SG    
Sbjct: 182 LIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPN 241

Query: 44  ------FLEEARYLFDIMP-------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                 FL       D++              E++    NT++S YAK   +++A RLF 
Sbjct: 242 FATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFE 301

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDE 140
            +P  ++V+WN MISG +QNG +  A+  F  M       DS +L +L+  L     L +
Sbjct: 302 LLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQ 361

Query: 141 AARV------------------LVKCGSRCDGGE------DLVRAYN-----TLIVGYGQ 171
              V                  LV    +C          D  RA +     T+I GY  
Sbjct: 362 GKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVL 421

Query: 172 RGRVEEARKLFDKIPVNCDRG------------------------EGNV---RFKRNIVS 204
            G  E+A ++F  +   C +                          G V    ++     
Sbjct: 422 NGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYV 481

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF-------- 256
            ++++  YAK G +  +  IF +M  +D  +WN+MIS +    + +EA +LF        
Sbjct: 482 ESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGI 541

Query: 257 ------------------------------VKMP-HPDTLTWNAMVSGYAQIGNLELALD 285
                                         +K P   D    +A++  YA+ GN+ELAL 
Sbjct: 542 KYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALR 601

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F+ MP KN VSWNS+I+    +   + ++    +MQ EG KPD  TF +++S  +    
Sbjct: 602 VFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGL 661

Query: 346 LHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           +  G+Q+ Q +TK   + P +     ++ +Y+R G + +A     +M    +   W A++
Sbjct: 662 VEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALL 721

Query: 404 GGCASH 409
             C  H
Sbjct: 722 HACRVH 727


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 179/502 (35%), Positives = 293/502 (58%), Gaps = 29/502 (5%)

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA----SLSALVSGLIQNGE 137
           +FN + + + V WN  I G+ +N  V+  +  F RM   D+     +  +L+    +   
Sbjct: 79  VFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCG 138

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           + E        V+CG    GG+  V    +LI  YG+ G +  ARK+FD++      GE 
Sbjct: 139 VKEGVAFHGSAVRCGV---GGDVFV--MTSLIDLYGKCGEILCARKVFDEM------GE- 186

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASN 254
                RN+VSW +MI  YA   D+V AR++F++M E++  SWN +ISGY+   D+  A  
Sbjct: 187 -----RNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARK 241

Query: 255 LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
           +F +MPH + +++  M+ GYA+ G++  A   F+  P++++V+W+++I+G   N     A
Sbjct: 242 MFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEA 301

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP---INNALI 371
           +K+F++M     KPD     S++S  S +  L L   +   V K+ I DV    +  ALI
Sbjct: 302 VKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSI-DVHRAHVIAALI 360

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            M A+CG++  A  +FEEM   ++++S+ +M+ G + HG   +A+ LF  M +  + P  
Sbjct: 361 DMNAKCGSMDRATKLFEEMPK-RDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDD 419

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           + F  +L+AC+ AGLV+EG  +F+SM  +Y I P  +H+A +VD++GR GRL++A +L+K
Sbjct: 420 VAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLK 479

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
            MP EP    WGALLGAC++H ++EL +V A+ L ++EP+N+  YVLL N+YA   +W D
Sbjct: 480 SMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLD 539

Query: 552 ANEVRLLMKSNNIKKPTGYSWV 573
            + +R  M+   I+K  G SW+
Sbjct: 540 VSLLRNKMRERGIRKIPGCSWI 561



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 173/295 (58%), Gaps = 18/295 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K  E+  ARK+FDEM +R+VVSW  MI+GY S      L EAR LFD MPE++ 
Sbjct: 164 LIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSD---LVEARKLFDEMPEKNA 220

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN +ISGY K G++  A ++F+ MP RNVVS+  MI G+ ++GD+A+A   F+  P R
Sbjct: 221 VSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPER 280

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  + SAL+SG +QNG+ +EA ++ ++  SR    ++ +    +L+    Q G +E A+ 
Sbjct: 281 DVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMV--SLMSACSQMGSLELAKW 338

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           + D +     R       + ++++  ++I   AK G +  A ++FE+M +RD  S+ +M+
Sbjct: 339 VDDYV-----RKSSIDVHRAHVIA--ALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMM 391

Query: 241 SGY-IHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
            G  IH     +A +LF +M +    PD + +  +++  ++ G ++    +F+ M
Sbjct: 392 QGLSIHGCG-PQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESM 445



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 181/362 (50%), Gaps = 29/362 (8%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D     ++I  Y K GE+  A ++F+ M  RNVVSW AMI+G+    D+  A + FD MP
Sbjct: 157 DVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP 216

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
            +++ S +A++SG ++ G+L  A ++  +   R       V ++ T+I GY + G +  A
Sbjct: 217 EKNAVSWNAIISGYVKCGDLRSARKMFDEMPHR------NVVSFTTMIDGYAKSGDMASA 270

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTF 234
           R +F++ P            +R++V+W+++I  Y + G    A +IF +M  R    D F
Sbjct: 271 RFVFEEAP------------ERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEF 318

Query: 235 SWNTMISGYIHVLDMEEAS--NLFVKMPHPDTLTWN---AMVSGYAQIGNLELALDFFKR 289
              +++S    +  +E A   + +V+    D    +   A++   A+ G+++ A   F+ 
Sbjct: 319 IMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEE 378

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLH 347
           MP+++L+S+ SM+ G   +     A+ LF +M  EG  PD   F+ IL+  S  G+VD  
Sbjct: 379 MPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEG 438

Query: 348 LGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
                      +++P       ++ +  R G + EA  + + M +  +  +W A++G C 
Sbjct: 439 CYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACK 498

Query: 408 SH 409
            H
Sbjct: 499 LH 500



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 123/276 (44%), Gaps = 13/276 (4%)

Query: 233 TFSWNTMISGYIHVLDMEEA-SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           T S +T++        +E+  + +  K  H D    +  ++    + N       F  + 
Sbjct: 25  TSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVS 84

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
             + V WN+ I G   N      + LFI+M+     PD+ T+ S++   S +  +  G+ 
Sbjct: 85  SPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVA 144

Query: 352 IHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            H    +  V  DV +  +LI +Y +CG I+ AR +F+EM   +NVVSW AMI G AS  
Sbjct: 145 FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMG-ERNVVSWTAMIAGYASFS 203

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
              EA +LF  M         +++ +++S     G +   R+ F  M +       +  F
Sbjct: 204 DLVEARKLFDEMPE----KNAVSWNAIISGYVKCGDLRSARKMFDEMPHR-----NVVSF 254

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            +++D   + G +  A  + +  P E D   W AL+
Sbjct: 255 TTMIDGYAKSGDMASARFVFEEAP-ERDVVAWSALI 289


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 206/635 (32%), Positives = 328/635 (51%), Gaps = 85/635 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI-------------SSRGSGFLEE 47
           +ISGY K  E+  A K+F E  QRD VSWN MI+G++             S +  GF  +
Sbjct: 40  IISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVD 99

Query: 48  ARYLFDIMPERDCVTW-----------------------NTVISGYAKTGEMEEALRLFN 84
                 I+    CV +                       + ++  YAK   +E+A  +F 
Sbjct: 100 GYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFK 159

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
           S+  RN V+WNA+ISG+ Q GD   A    D M       D  + + L++ L        
Sbjct: 160 SINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKL 219

Query: 141 AARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
             +V   +VK G   D         N +I  Y + G +E+A ++FD          G + 
Sbjct: 220 TTQVHAKIVKHGLASD-----TTVCNAIITAYSECGSIEDAERVFD----------GAIE 264

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG----------- 242
             R++V+WNSM+  Y        A ++F +M     E D +++ ++IS            
Sbjct: 265 -TRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGK 323

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY--AQIGNLELALDFFKRMPQKNLVSWNS 300
            +H L ++      V +        N++++ Y  +   +++ AL+ F+ +  K+ VSWNS
Sbjct: 324 SLHGLVIKRGLEFLVPIS-------NSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNS 376

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           ++ G   +   E A+K F  M+ +    D + FS++L   S +  L LG Q+H +V K+ 
Sbjct: 377 ILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSG 436

Query: 361 I-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
             P+  + ++LI MY++CG I +AR  F+      + ++WN++I G A HG    AL+LF
Sbjct: 437 FEPNGFVASSLIFMYSKCGVIEDARKSFDATP-KDSSIAWNSLIFGYAQHGRGKIALDLF 495

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M+  +V   +ITF++VL+AC+H GLVEEG    KSM ++YGI PR+EH+A ++D++GR
Sbjct: 496 FLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGR 555

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRL++A  LI+ MPFEPD  VW  LLGACR   ++ELA   A  L+++EPE    YVLL
Sbjct: 556 AGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLL 615

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            +M+  + RW++   ++ LMK   +KK  G+SW++
Sbjct: 616 SSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIE 650



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 193/431 (44%), Gaps = 78/431 (18%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA-------- 252
           +I + N++I  YAK G++  A ++F +  +RD  SWNTMI+G++++ + E A        
Sbjct: 33  SIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMK 92

Query: 253 ------------------------------SNLFVKMPHP-DTLTWNAMVSGYAQIGNLE 281
                                          ++ VKM +  +    +A++  YA+   +E
Sbjct: 93  RYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVE 152

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A + FK +  +N V+WN++I+G     D   A  L   M++EG + D  TF+ +L++  
Sbjct: 153 DAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLD 212

Query: 342 GIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
                 L  Q+H ++V   +  D  + NA+IT Y+ CG+I +A  +F+     +++V+WN
Sbjct: 213 DPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWN 272

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC---AHAG--------LVEE 449
           +M+     +    EA +LF  M+     P   T+ SV+SA    +H G        +++ 
Sbjct: 273 SMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKR 332

Query: 450 G----------------RQHFKSMVNEYGIEPRIEH-----FASLVDIVGRHGRLEDAMD 488
           G                + H KSM     I   +E+     + S++    + G  EDA+ 
Sbjct: 333 GLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALK 392

Query: 489 LIKGMPFE---PDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENSTPYVLLYNMY 543
             + M  +    D   + A+L +C     ++L Q     ++K   EP       L++ MY
Sbjct: 393 FFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIF-MY 451

Query: 544 ADVGRWDDANE 554
           +  G  +DA +
Sbjct: 452 SKCGVIEDARK 462


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 224/731 (30%), Positives = 357/731 (48%), Gaps = 157/731 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS---------------RGSGF- 44
           MI+GY K   M KA   F+ MP RDVVSWN M+SGY+ +                G+ F 
Sbjct: 78  MINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFD 137

Query: 45  -------------LEEARYLFDIMP-------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                        LE+      I         + D V  + ++  YAK     E+LR+F 
Sbjct: 138 GRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQ 197

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG--------------RDSASLSAL-V 129
            +P +N VSW+A+I+G +QN  ++ A++FF  M                R  A+LS L +
Sbjct: 198 GIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRL 257

Query: 130 SGLIQNGEL--DEAARVLVKCGS-----RCDGGEDLV-----------RAYNTLIVGYGQ 171
            G +    L  D AA  +V+  +     +CD  +D             ++YN +I GY Q
Sbjct: 258 GGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQ 317

Query: 172 RGRVEEARKLF----------DKIPVN-----CDRGEG------------NVRFKRNIVS 204
                +A  LF          D+I ++     C   +G                  ++  
Sbjct: 318 EEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCV 377

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP---- 260
            N+ I  Y K   +  A  +F++M  RD  SWN +I+ +       E   LFV M     
Sbjct: 378 ANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRI 437

Query: 261 HPDTLTWNAMVSG----------------------------------YAQIGNLELALD- 285
            PD  T+ +++                                    Y++ G +E A   
Sbjct: 438 EPDEFTFGSVLKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKI 497

Query: 286 ---FFKR------------MPQKNL----VSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
              FF+R            M  K L    VSWNS+I+G    +  E A  LF +M   G 
Sbjct: 498 HSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGI 557

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARI 385
            PD+ T++++L   + +    LG QIH Q++ K +  DV I++ L+ MY++CG + ++R+
Sbjct: 558 TPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRL 617

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +FE+  L ++ V+WNAMI G A HG   EA++LF+ M    + P ++TFIS+L ACAH G
Sbjct: 618 MFEK-SLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMG 676

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           L+++G ++F  M  +YG++P++ H++++VDI+G+ G+++ A++LI+ MPFE D  +W  L
Sbjct: 677 LIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTL 736

Query: 506 LGACRVH-NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           LG C +H NNVE+A+ A  AL++++P++S+ Y LL N+YAD G W+  +++R  M+   +
Sbjct: 737 LGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKL 796

Query: 565 KKPTGYSWVDF 575
           KK  G SWV+ 
Sbjct: 797 KKEPGCSWVEL 807



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 139/473 (29%), Positives = 226/473 (47%), Gaps = 39/473 (8%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N ++  Y +SR       A  +FD MP RD V+WN +I+GYAK+  M +A   FN MP R
Sbjct: 45  NCLLQVYTNSRD---FVSASMVFDRMPLRDVVSWNKMINGYAKSNNMVKASFFFNMMPVR 101

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRM-------PGRDSASLSALVSGLIQNGELDEAA 142
           +VVSWN+M+SG+LQNG+   +IE F  M        GR  A +  + S L       +  
Sbjct: 102 DVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQIH 161

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
            V+V+ G   D     V A + L+  Y +  R  E+ ++F  IP            ++N 
Sbjct: 162 GVVVRVGCDTD-----VVAASALLDMYAKGKRFVESLRVFQGIP------------EKNS 204

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH----VLDMEEASNLFVK 258
           VSW+++I    +   +  A + F++M + +     ++ +  +     + ++     L   
Sbjct: 205 VSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAH 264

Query: 259 MPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
                   D +   A +  YA+  N++ A   F +    N  S+N+MI G    +    A
Sbjct: 265 ALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKA 324

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITM 373
           + LF ++   G   D  + S +    + +  L  G+QI+ +  K+ +  DV + NA I M
Sbjct: 325 LLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDM 384

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           Y +C A+ EA  +F+EM+  ++ VSWNA+I     +G   E L LF SM   ++ P   T
Sbjct: 385 YGKCQALAEAFRVFDEMR-RRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFT 443

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           F SVL AC   G +  G +   S+V   G+        SL+D+  + G +E+A
Sbjct: 444 FGSVLKACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEA 494



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 158/302 (52%), Gaps = 14/302 (4%)

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDME 250
           N+RF R     N  + C AK G +   ++    M+       TF  N ++  Y +  D  
Sbjct: 4   NLRFLR----MNRAVEC-AKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFV 58

Query: 251 EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
            AS +F +MP  D ++WN M++GYA+  N+  A  FF  MP +++VSWNSM++G   N +
Sbjct: 59  SASMVFDRMPLRDVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGE 118

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNA 369
              +I++F+ M   G + D  TF+ IL + S + D  LGMQIH +V +     DV   +A
Sbjct: 119 TLKSIEVFVDMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASA 178

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           L+ MYA+    VE+  +F+ +   KN VSW+A+I GC  +   + AL+ FK M+      
Sbjct: 179 LLDMYAKGKRFVESLRVFQGIP-EKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGV 237

Query: 430 TYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           +   + SVL +CA    +  G Q H  ++ +++  +  +    + +D+  +   ++DA  
Sbjct: 238 SQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVR--TATLDMYAKCDNMQDAQI 295

Query: 489 LI 490
           L 
Sbjct: 296 LF 297


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 170/421 (40%), Positives = 260/421 (61%), Gaps = 22/421 (5%)

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           V  +N ++ GY +     +A+ LFD +P            +RN+++W +M+  YAK  D+
Sbjct: 74  VADWNAMVSGYWKWESEGQAQWLFDVMP------------ERNVITWTAMVTGYAKVKDL 121

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM--PHPDTLTWNAMVSGYAQ 276
            +AR  F+ M ER   SWN M+SGY      EEA  LF +M   + +++TWNAM+S Y +
Sbjct: 122 EAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMR 181

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSS 335
           +G+L+ A   F  MP +N+V+WNSMIAG   N     AI+LF +M   +   PD  T  S
Sbjct: 182 VGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVS 241

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           ++S    +  L LG  + + +T+  I   +  +NA+I MY+RCG++ +A+ +F+EM   +
Sbjct: 242 VISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMAT-R 300

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           +VVS+N +I G A+HG   EA+ L  +M+   + P  +TFI VL+AC+HAGL+EEGR+ F
Sbjct: 301 DVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVF 360

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           +S+      +P I+H+A +VD++GR G LEDA   ++ MP EP   V+G+LL A R+H  
Sbjct: 361 ESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQ 415

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           VEL ++AA  L ++EP+NS  ++LL N+YA  GRW D   +R  MK   +KK TG+SWV+
Sbjct: 416 VELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVE 475

Query: 575 F 575
           +
Sbjct: 476 Y 476



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 127/423 (30%), Positives = 210/423 (49%), Gaps = 31/423 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+SGY K     +A+ LFD MP+R+V++W  M++GY   +    LE AR  FD MPER  
Sbjct: 80  MVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKD---LEAARRYFDCMPERSV 136

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM--PARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           V+WN ++SGYA+ G  EEALRLF+ M    RN V+WNAMIS +++ GD+ +A + F+ MP
Sbjct: 137 VSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMP 196

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
           GR+  + +++++G  QNG+   A  +  +  +      D V    ++I   G  G +E  
Sbjct: 197 GRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMV-SVISACGHLGALELG 255

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT 238
             +   +  N        + K +I   N+MI  Y++ G +  A+ +F++M  RD  S+NT
Sbjct: 256 NWVVRFLTEN--------QIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNT 307

Query: 239 MISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
           +ISG+       EA NL   M      PD +T+  +++  +  G LE     F+ +    
Sbjct: 308 LISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPA 367

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           +  +  M+       + E A +   +M +E   P    + S+L+ S     +H  +++ +
Sbjct: 368 IDHYACMVDLLGRVGELEDAKRTMERMPME---PHAGVYGSLLNASR----IHKQVELGE 420

Query: 355 MVTKTVIPDVPINNA----LITMYARCGAIVEARIIFEEMKL--LKNVVSWNAMIGGCAS 408
           +    +    P N+     L  +YA  G   +   I E MK   +K    W+ +  G   
Sbjct: 421 LAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKL 480

Query: 409 HGF 411
           H F
Sbjct: 481 HKF 483



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/268 (33%), Positives = 135/268 (50%), Gaps = 39/268 (14%)

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
           M  R    WN M+SGY       +A  LF  MP  + +TW AMV+GYA++ +LE A  +F
Sbjct: 69  MYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYF 128

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
             MP++++VSWN+M++G   N   E A++LF +M                          
Sbjct: 129 DCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEM-------------------------- 162

Query: 348 LGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           LG   + +            NA+I+ Y R G +  AR +F  M   +NVV+WN+MI G A
Sbjct: 163 LGAYRNSVTW----------NAMISAYMRVGDLDSARKLFNTMP-GRNVVTWNSMIAGYA 211

Query: 408 SHGFATEALELFKSMRSFKVL-PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
            +G +  A+ELFK M + K L P  +T +SV+SAC H G +E G    +  + E  I+  
Sbjct: 212 QNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVR-FLTENQIKLS 270

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           I    +++ +  R G +EDA  + + M 
Sbjct: 271 ISGHNAMIFMYSRCGSMEDAKRVFQEMA 298


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 210/713 (29%), Positives = 338/713 (47%), Gaps = 143/713 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
           +++ Y K R  A AR +  +MP RDVVSW  +I G ++    GF  ++ YLF       I
Sbjct: 153 LVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAE---GFANDSIYLFQEMQNEGI 209

Query: 55  MPER---------------------------------DCVTWNTVISGYAKTGEMEEALR 81
           MP                                   D    + ++  YAK GE+E A +
Sbjct: 210 MPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASK 269

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNGE 137
           +F  MP +N V+WN +++G+ Q GDV   ++ F  M   D      +L+ ++ G   +  
Sbjct: 270 MFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKN 329

Query: 138 LDEAA---RVLVKCG---------------SRCDGGEDLVRAYNT-----------LIVG 168
           L +      +++KCG               S+C    D +  + T           LI  
Sbjct: 330 LKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITC 389

Query: 169 YGQRGRVEEARKLF------DKIP--------VNCDRGEGNVRFKRNIVS--W------- 205
             Q+G+ EE+ KLF      D +P        ++     GN+++ ++I +  W       
Sbjct: 390 LDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETD 449

Query: 206 ----NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG-------------YIHVLD 248
               N+++  Y K G V    +++E M++RD  SWN  +SG             + H+L+
Sbjct: 450 VAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLE 509

Query: 249 MEEASNLFV-----------------KMPHP---------DTLTWNAMVSGYAQIGNLEL 282
                N++                  +  H          +     A++  YA+   LE 
Sbjct: 510 EGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLED 569

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F R+  ++L +W  +I         E A+  F QMQ EG KP+  T +  LS  S 
Sbjct: 570 ADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSS 629

Query: 343 IVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  L  G Q+H MV K+  + D+ + +AL+ MYA+CG + EA  +FE + + ++ ++WN 
Sbjct: 630 LASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNT 688

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           +I G A +G   +AL  F+ M    + P  +TF  +LSAC+H GLVEEG++HF SM  ++
Sbjct: 689 IICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDF 748

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           GI P ++H A +VDI+GR G+ ++  D I+ M    +  +W  +LGA ++HNN+ L + A
Sbjct: 749 GISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKA 808

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A  L +++PE  + Y+LL N++A  GRWDD   VR LM S  +KK  G SWV+
Sbjct: 809 ANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVE 861



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 212/453 (46%), Gaps = 53/453 (11%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D   W ++++ YAK      A  +   MP R+VVSW A+I G +  G   ++I  F  M 
Sbjct: 146 DSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQ 205

Query: 119 GRDSASLSALVSGLIQNG-ELDEAARVLVKCGSRCDGGEDLVRAYN-----TLIVG---- 168
                       G++ N   L    +    C +   G +   +A+       L VG    
Sbjct: 206 NE----------GIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALV 255

Query: 169 --YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
             Y + G +E A K+F  +P            ++N V+WN ++  YA+ GDV    ++F 
Sbjct: 256 DLYAKCGEIELASKMFIGMP------------EQNDVTWNVLLNGYAQRGDVTGVLKLFC 303

Query: 227 QMLERDT----FSWNTMISGYIHVLDMEEAS---NLFVKMPHP-DTLTWNAMVSGYAQIG 278
            M+E D     F+  T++ G  +  ++++     +L +K  +  +      +V  Y++ G
Sbjct: 304 SMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCG 363

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
               A+  FK + + ++V W+++I   +     E +IKLF  M++    P+++T  S+LS
Sbjct: 364 LAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLS 423

Query: 339 MSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
            ++   +L  G  IH  V K     DV ++NAL+TMY + G + +   ++E M + ++++
Sbjct: 424 AATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLI 482

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWNA + G    G     L +F  M     +P   TFIS+L +C+    V  GRQ     
Sbjct: 483 SWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQ----- 537

Query: 458 VNEYGIEPRIEH----FASLVDIVGRHGRLEDA 486
           V+ + I+ +++       +L+D+  +   LEDA
Sbjct: 538 VHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDA 570



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 128/247 (51%), Gaps = 4/247 (1%)

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
           +PD+  W ++V+ YA+      A     +MP +++VSW ++I G         +I LF +
Sbjct: 144 NPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQE 203

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGA 379
           MQ EG  P+  T ++ L   S  + L LG Q+H    K  ++ D+ + +AL+ +YA+CG 
Sbjct: 204 MQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGE 263

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           I  A  +F  M   +N V+WN ++ G A  G  T  L+LF SM    V     T  +VL 
Sbjct: 264 IELASKMFIGMP-EQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLK 322

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
            CA++  +++G Q   S++ + G E        LVD+  + G   DA+ + K +  +PD 
Sbjct: 323 GCANSKNLKQG-QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDI 380

Query: 500 AVWGALL 506
            VW AL+
Sbjct: 381 VVWSALI 387



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 4/175 (2%)

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMK 391
           +SS+L   +    L +   IH ++ K VI PD  +  +L+ +YA+C     AR++  +M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             ++VVSW A+I G  + GFA +++ LF+ M++  ++P   T  + L AC+    ++ G+
Sbjct: 175 -DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGK 233

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           Q   +   + G+   +   ++LVD+  + G +E A  +  GMP E +   W  LL
Sbjct: 234 Q-MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLL 286


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 211/652 (32%), Positives = 313/652 (48%), Gaps = 118/652 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----------------------- 37
           +I+ Y K   M +A  +F  +P R  V+WN +I+GY                        
Sbjct: 161 LINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPD 220

Query: 38  ---------SSRGSGFLEEAR----YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
                    +    GFLE  R    Y +    E D    N +I  Y K   +  A +LF+
Sbjct: 221 RFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFD 280

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            M  RN+VSW  MISG++QN   A AI  F  M                           
Sbjct: 281 CMEYRNLVSWTTMISGYMQNSFNAEAITMFWNM--------------------------- 313

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
             + G + DG      A  +++   G    + + R++   + +  D  E +   K     
Sbjct: 314 -TQAGWQPDG-----FACTSILNSCGSLAAIWQGRQIHAHV-IKADL-EADEYVK----- 360

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP---- 260
            N++I  YAK   +  AR +F+ + E D  S+N MI GY    D+ EA N+F +M     
Sbjct: 361 -NALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSL 419

Query: 261 HPDTLTW-----------------------------------NAMVSGYAQIGNLELALD 285
            P  LT+                                   +A++  Y++   +  A  
Sbjct: 420 RPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKT 479

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F  +  K++V WNSMI G   N+  E AIKLF Q+ + G  P+  TF ++++++S +  
Sbjct: 480 VFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLAS 539

Query: 346 LHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           +  G Q H  + K  + + P ++NALI MYA+CG I E R++FE     ++V+ WN+MI 
Sbjct: 540 MFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFES-TCGEDVICWNSMIT 598

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
             A HG A EAL++F+ M   +V P Y+TF+ VLSACAHAG V EG  HF SM + Y IE
Sbjct: 599 TYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNYDIE 658

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           P IEH+AS+V++ GR G+L  A + I+ MP +P  AVW +LL AC +  N E+ + AAE 
Sbjct: 659 PGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAEIGRYAAEM 718

Query: 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
            +  +P +S PYVLL N+YA  G W D + +R  M S+   K TG SW++ +
Sbjct: 719 ALLADPTDSGPYVLLSNIYASKGLWADVHNLRQQMDSSGTVKETGCSWIEVT 770



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 165/633 (26%), Positives = 281/633 (44%), Gaps = 98/633 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++ GY     +  AR LFD MP R++VSW  +IS Y      G  + A  LF    +  C
Sbjct: 59  LLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQ---HGRDDCAISLFVAFQKASC 115

Query: 61  VTWN----------------------------------------TVISGYAKTGEMEEAL 80
              N                                         +I+ YAK G M+EA+
Sbjct: 116 EVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAM 175

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNG 136
            +F+++P R  V+WN +I+G+ Q G    A+E FDRM       D   L++ VS     G
Sbjct: 176 LVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALG 235

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            L E  R +     R    E      N LI  Y +  R+  ARKLFD +           
Sbjct: 236 FL-EGGRQIHGYAYR-SATETDTSVINVLIDLYCKCSRLSAARKLFDCMEY--------- 284

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISG---------- 242
              RN+VSW +MI  Y +      A  +F  M +     D F+  ++++           
Sbjct: 285 ---RNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQG 341

Query: 243 ---YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
              + HV+  +  ++ +VK         NA++  YA+  +L  A   F  + + + +S+N
Sbjct: 342 RQIHAHVIKADLEADEYVK---------NALIDMYAKCEHLTEARAVFDALAEDDAISYN 392

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           +MI G   N+D   A+ +F +M+    +P   TF S+L +SS  + + L  QIH ++ K+
Sbjct: 393 AMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKS 452

Query: 360 VIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
               D+   +ALI +Y++C  + +A+ +F  M   K++V WN+MI G A +    EA++L
Sbjct: 453 GTSLDLYAASALIDVYSKCSLVNDAKTVF-NMLHYKDMVIWNSMIFGHAQNEQGEEAIKL 511

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  +    + P   TF+++++  +    +  G+Q F + + + G++       +L+D+  
Sbjct: 512 FNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQ-FHAWIIKAGVDNDPHVSNALIDMYA 570

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA----QVAAEALMKVEPENST 534
           + G +++   L +    E D   W +++     H + E A    ++  EA  +VEP N  
Sbjct: 571 KCGFIKEGRMLFESTCGE-DVICWNSMITTYAQHGHAEEALQVFRLMGEA--EVEP-NYV 626

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
            +V + +  A  G   +       MKSN   +P
Sbjct: 627 TFVGVLSACAHAGFVGEGLNHFNSMKSNYDIEP 659



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 219/474 (46%), Gaps = 55/474 (11%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D    N ++ GY+  G + +A  LF+ MP RN+VSW ++IS + Q+              
Sbjct: 52  DLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQH-------------- 97

Query: 119 GRDSASLSALVSGLIQNGELDEA---ARVLVKC--------GSRCDG---GEDL---VRA 161
           GRD  ++S  V+    + E+      A VL  C        G +  G     DL   V  
Sbjct: 98  GRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYV 157

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
              LI  Y + G ++EA  +F  +PV            R  V+WN++I  YA+ G    A
Sbjct: 158 GTALINLYAKLGCMDEAMLVFHALPV------------RTPVTWNTVITGYAQIGCGGVA 205

Query: 222 REIFEQM----LERDTFSWNTMISGYIHVLDMEEASNL----FVKMPHPDTLTWNAMVSG 273
            E+F++M    +  D F   + +S    +  +E    +    +      DT   N ++  
Sbjct: 206 LELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDL 265

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           Y +   L  A   F  M  +NLVSW +MI+G   N     AI +F  M   G +PD    
Sbjct: 266 YCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFAC 325

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKL 392
           +SIL+    +  +  G QIH  V K  +  D  + NALI MYA+C  + EAR +F+ +  
Sbjct: 326 TSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALA- 384

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
             + +S+NAMI G + +    EA+ +F+ MR F + P+ +TF+S+L   +    +E  +Q
Sbjct: 385 EDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQ 444

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
               ++ + G    +   ++L+D+  +   + DA  +   + ++ D  +W +++
Sbjct: 445 -IHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYK-DMVIWNSMI 496


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 210/713 (29%), Positives = 338/713 (47%), Gaps = 143/713 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
           +++ Y K R  A AR +  +MP RDVVSW  +I G ++    GF  ++ YLF       I
Sbjct: 153 LVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAE---GFANDSIYLFQEMQNEGI 209

Query: 55  MPER---------------------------------DCVTWNTVISGYAKTGEMEEALR 81
           MP                                   D    + ++  YAK GE+E A +
Sbjct: 210 MPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASK 269

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA----SLSALVSGLIQNGE 137
           +F  MP +N V+WN +++G+ Q GDV   ++ F  M   D      +L+ ++ G   +  
Sbjct: 270 MFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKN 329

Query: 138 LDEAA---RVLVKCG---------------SRCDGGEDLVRAYNT-----------LIVG 168
           L +      +++KCG               S+C    D +  + T           LI  
Sbjct: 330 LKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITC 389

Query: 169 YGQRGRVEEARKLF------DKIP--------VNCDRGEGNVRFKRNIVS--W------- 205
             Q+G+ EE+ KLF      D +P        ++     GN+++ ++I +  W       
Sbjct: 390 LDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETD 449

Query: 206 ----NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG-------------YIHVLD 248
               N+++  Y K G V    +++E M++RD  SWN  +SG             + H+L+
Sbjct: 450 VAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLE 509

Query: 249 MEEASNLFV-----------------KMPHP---------DTLTWNAMVSGYAQIGNLEL 282
                N++                  +  H          +     A++  YA+   LE 
Sbjct: 510 EGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLED 569

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F R+  ++L +W  +I         E A+  F QMQ EG KP+  T +  LS  S 
Sbjct: 570 ADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSS 629

Query: 343 IVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  L  G Q+H MV K+  + D+ + +AL+ MYA+CG + EA  +FE + + ++ ++WN 
Sbjct: 630 LASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNT 688

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           +I G A +G   +AL  F+ M    + P  +TF  +LSAC+H GLVEEG++HF SM  ++
Sbjct: 689 IICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDF 748

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           GI P ++H A +VDI+GR G+ ++  D I+ M    +  +W  +LGA ++HNN+ L + A
Sbjct: 749 GISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKA 808

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A  L +++PE  + Y+LL N++A  GRWDD   VR LM S  +KK  G SWV+
Sbjct: 809 ANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVE 861



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 212/453 (46%), Gaps = 53/453 (11%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D   W ++++ YAK      A  +   MP R+VVSW A+I G +  G   ++I  F  M 
Sbjct: 146 DSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQ 205

Query: 119 GRDSASLSALVSGLIQNG-ELDEAARVLVKCGSRCDGGEDLVRAYN-----TLIVG---- 168
                       G++ N   L    +    C +   G +   +A+       L VG    
Sbjct: 206 NE----------GIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALV 255

Query: 169 --YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
             Y + G +E A K+F  +P            ++N V+WN ++  YA+ GDV    ++F 
Sbjct: 256 DLYAKCGEIELASKMFIGMP------------EQNDVTWNVLLNGYAQRGDVTGVLKLFC 303

Query: 227 QMLERDT----FSWNTMISGYIHVLDMEEAS---NLFVKMPHP-DTLTWNAMVSGYAQIG 278
            M+E D     F+  T++ G  +  ++++     +L +K  +  +      +V  Y++ G
Sbjct: 304 SMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCG 363

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
               A+  FK + + ++V W+++I   +     E +IKLF  M++    P+++T  S+LS
Sbjct: 364 LAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLS 423

Query: 339 MSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
            ++   +L  G  IH  V K     DV ++NAL+TMY + G + +   ++E M + ++++
Sbjct: 424 AATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLI 482

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWNA + G    G     L +F  M     +P   TFIS+L +C+    V  GRQ     
Sbjct: 483 SWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQ----- 537

Query: 458 VNEYGIEPRIEH----FASLVDIVGRHGRLEDA 486
           V+ + I+ +++       +L+D+  +   LEDA
Sbjct: 538 VHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDA 570



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 128/247 (51%), Gaps = 4/247 (1%)

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
           +PD+  W ++V+ YA+      A     +MP +++VSW ++I G         +I LF +
Sbjct: 144 NPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQE 203

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGA 379
           MQ EG  P+  T ++ L   S  + L LG Q+H    K  ++ D+ + +AL+ +YA+CG 
Sbjct: 204 MQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGE 263

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           I  A  +F  M   +N V+WN ++ G A  G  T  L+LF SM    V     T  +VL 
Sbjct: 264 IELASKMFIGMP-EQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLK 322

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
            CA++  +++G Q   S++ + G E        LVD+  + G   DA+ + K +  +PD 
Sbjct: 323 GCANSKNLKQG-QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDI 380

Query: 500 AVWGALL 506
            VW AL+
Sbjct: 381 VVWSALI 387



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 4/175 (2%)

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMK 391
           +SS+L   +    L +   IH ++ K VI PD  +  +L+ +YA+C     AR++  +M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             ++VVSW A+I G  + GFA +++ LF+ M++  ++P   T  + L AC+    ++ G+
Sbjct: 175 -DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGK 233

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           Q   +   + G+   +   ++LVD+  + G +E A  +  GMP E +   W  LL
Sbjct: 234 Q-MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLL 286


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 200/634 (31%), Positives = 325/634 (51%), Gaps = 87/634 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           ++  Y K  +   AR++FDE+PQ+ V SW V++ G   +  +GF  +    F      DI
Sbjct: 104 LVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLMVG---ATENGFYRDGIDYFVEILGCDI 160

Query: 55  MPE--------RDCVTWNTVISG-------------------------YAKTGEMEEALR 81
           +P+        + C+  ++++ G                         YAK G + ++ +
Sbjct: 161 VPDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCK 220

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNGE 137
           +FNS+  RN VSWNAMISGF+ NG  A A   F RM G +     A   ++   + Q G+
Sbjct: 221 VFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGD 280

Query: 138 LDEAA---RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           +++     R+  + G + +     +     LI  + + G V E+  +F      C     
Sbjct: 281 VEKGRYINRIAFEIGMQSN-----IHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVN-- 333

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDME 250
                   + WN+MI  +  +G    A  +F +M    ++RD +++ + ++    +  +E
Sbjct: 334 --------LPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLE 385

Query: 251 EASNLFVKMPHPDTLTW----------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
                +VK  H   + W          NA++  YA+ G L+     F    + N +SW +
Sbjct: 386 -----YVKQLHG--MIWKSGSIGVSLCNALMDAYAKCGELDAMRKLFDTWEESNQISWTT 438

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           ++     + ++E A+ +F QM+  G +P++ TFS +L+  + +  L  G Q+H +  KT 
Sbjct: 439 LVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKTG 498

Query: 361 IP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              D  + + LI MYA+CG++ +A  +FE +K   +V+SW AMI G A HG A +ALELF
Sbjct: 499 FARDKCVESVLIDMYAKCGSVRDAIKVFESLK-DPDVISWTAMISGYAQHGMAKDALELF 557

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           + M      P   TF+ +L AC+H GLV+EG ++F  M   YG+ P IEH+A +VDI+GR
Sbjct: 558 RKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVPEIEHYACVVDILGR 617

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRL +A   I  MP EPD+ VW  LLGACRVH N++LA++AA+ ++   P++    VLL
Sbjct: 618 VGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQLAKIAAQKVLSYNPDDFAALVLL 677

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            N Y + G  +    VR +MKS  ++K TG SW+
Sbjct: 678 SNTYREAGNIEGGLNVRNMMKSQAMRKETGMSWI 711



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 131/525 (24%), Positives = 232/525 (44%), Gaps = 73/525 (13%)

Query: 52  FDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAI 111
           F ++ +   V  N ++  Y+K  +   A ++F+ +P ++V SW  ++ G  +NG   + I
Sbjct: 90  FQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLMVGATENGFYRDGI 149

Query: 112 EFFDRMPG----RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV 167
           ++F  + G     D  +LSA +   I    +     V  +  +R       V   NT ++
Sbjct: 150 DYFVEILGCDIVPDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFV---NTSLL 206

Query: 168 G-YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
           G Y + GR+ ++ K+F+ +              RN VSWN+MI  +   G    A   F 
Sbjct: 207 GMYAKLGRIGDSCKVFNSLE------------NRNQVSWNAMISGFVSNGLYAEAYNSFL 254

Query: 227 QMLE---RDTFSWNTMISGYIHVL-DMEEA-------------SNLFVKMPHPD------ 263
           +ML    R   +    +S  I  L D+E+              SN+ V     D      
Sbjct: 255 RMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCG 314

Query: 264 --TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
             T +W+  VS ++  G           +P      WN+MI+G   +   E A+ LF++M
Sbjct: 315 CVTESWSVFVSNFSGCG---------VNLP------WNAMISGFTISGHGEEAMLLFLRM 359

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIV 381
                K D +T+ S L+  + +  L    Q+H M+ K+    V + NAL+  YA+CG + 
Sbjct: 360 CQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGVSLCNALMDAYAKCGELD 419

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
             R +F+  +   N +SW  ++   +      +AL +F  MR     P  +TF  VL++C
Sbjct: 420 AMRKLFDTWE-ESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASC 478

Query: 442 AHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           A    +E G+Q H  +    +  +  +E  + L+D+  + G + DA+ + + +  +PD  
Sbjct: 479 ASLCSLEYGQQVHSLTCKTGFARDKCVE--SVLIDMYAKCGSVRDAIKVFESLK-DPDVI 535

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVE-----PENSTPYVLLY 540
            W A++     H    +A+ A E   K+E     P ++T   LL+
Sbjct: 536 SWTAMISGYAQHG---MAKDALELFRKMELVLPNPNSATFLCLLF 577



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 137/313 (43%), Gaps = 70/313 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSGF--- 44
           ++  Y K  E+   RKLFD   + + +SW  +++ Y  S             R  GF   
Sbjct: 408 LMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPN 467

Query: 45  ----------------LEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEALRLFN 84
                           LE  + +  +  +    RD    + +I  YAK G + +A+++F 
Sbjct: 468 QVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFE 527

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDE 140
           S+   +V+SW AMISG+ Q+G   +A+E F +M    P  +SA+   L+      G +DE
Sbjct: 528 SLKDPDVISWTAMISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDE 587

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD---------- 190
             R       R  G    +  Y  ++   G+ GR+ EA K   K+P+  D          
Sbjct: 588 GLRYFHLMEER-YGLVPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGA 646

Query: 191 -RGEGNVRFKR----NIVSWN-----SMIM---CYAKAGDV---VSAREIFE-QMLERDT 233
            R  GN++  +     ++S+N     ++++    Y +AG++   ++ R + + Q + ++T
Sbjct: 647 CRVHGNIQLAKIAAQKVLSYNPDDFAALVLLSNTYREAGNIEGGLNVRNMMKSQAMRKET 706

Query: 234 -FSWNTMISGYIH 245
             SW   I G IH
Sbjct: 707 GMSW-ICIGGKIH 718


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 187/500 (37%), Positives = 277/500 (55%), Gaps = 47/500 (9%)

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGEL 138
           AL++F+S+P  NV  WN +I G L+N  +  AI F+ RM                    +
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-------------------I 126

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG-NVR 197
           D                      Y TL         V+E R++   +      G G +V 
Sbjct: 127 DARPNKFT---------------YPTLFKACSVAQAVQEGRQIHGHV---VKHGIGSDVH 168

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
            K      ++ I  YA  G +  AR++F    E D   WNTMI GY+    +E A  LF 
Sbjct: 169 IK------SAGIQMYASFGRLEDARKMFYSG-ESDVVCWNTMIDGYLKCGVLEAAKGLFA 221

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           +MP  +  +WN M++G A+ GNL  A   F  M +++ +SW+SM+ G  +   Y+ A+++
Sbjct: 222 QMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEI 281

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYAR 376
           F QMQ E  +P R   SS+L+  S I  +  G  +H  + +  I  D  +  AL+ MYA+
Sbjct: 282 FQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAK 341

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG +     +FEEMK  + + +WNAMIGG A HG A +ALELF  ++  ++ P  IT + 
Sbjct: 342 CGRLDMGWEVFEEMKE-REIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVG 400

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           VL+ACAHAG V++G + F++M   YG++P +EH+  +VD++GR G   +A DLI  MP +
Sbjct: 401 VLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMK 460

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
           P+ AVWGALLGACR+H N +LA+   + L+++EP+NS  YVLL N+YA VGR+DD +++R
Sbjct: 461 PNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIR 520

Query: 557 LLMKSNNIKKPTGYSWVDFS 576
            LMK+  IK   G S VD +
Sbjct: 521 KLMKNRGIKTVPGVSIVDLN 540



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 164/377 (43%), Gaps = 56/377 (14%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G LE+AR +F    E D V WNT+I GY K G +E A  LF  MP +N+ SWN MI+G  
Sbjct: 181 GRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA 239

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
           + G++ +A + FD M  RD  S S++V G I  G   EA  +  +               
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQM-------------- 285

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNC------DRGEG-NVRFKRNIVSWN-----SMIM 210
                   QR      R +   +   C      D+G   +   KRN +  +     +++ 
Sbjct: 286 --------QREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLD 337

Query: 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT 266
            YAK G +    E+FE+M ER+ F+WN MI G       E+A  LF K+      P+ +T
Sbjct: 338 MYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGIT 397

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ----MQ 322
              +++  A  G ++  L  F+ M +   V       GC    D  G   LF +    + 
Sbjct: 398 LVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMV--DLLGRSGLFSEAEDLIN 455

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA----LITMYARCG 378
               KP+   + ++L    G   +H    + + V K ++   P N+     L  +YA+ G
Sbjct: 456 SMPMKPNAAVWGALL----GACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVG 511

Query: 379 AIVEARIIFEEMKLLKN 395
              +   I    KL+KN
Sbjct: 512 RFDDVSKI---RKLMKN 525



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 148/326 (45%), Gaps = 61/326 (18%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           I  Y     +  ARK+F    + DVV WN MI GY+     G LE A+ LF  MP ++  
Sbjct: 174 IQMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLK---CGVLEAAKGLFAQMPVKNIG 229

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM---- 117
           +WN +I+G AK G + +A +LF+ M  R+ +SW++M+ G++  G    A+E F +M    
Sbjct: 230 SWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREE 289

Query: 118 --PGRDSASLSALVSGLIQNGELDEAARV----------------------LVKCGSRCD 153
             PGR    LS++++     G +D+   V                        KCG R D
Sbjct: 290 TRPGR--FILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCG-RLD 346

Query: 154 GG--------EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
            G        E  +  +N +I G    GR E+A +LF K+       EG  R K N ++ 
Sbjct: 347 MGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQ------EG--RMKPNGITL 398

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM-------EEASNLFVK 258
             ++   A AG V     IF+ M  R+ +  +  +  Y  ++D+        EA +L   
Sbjct: 399 VGVLTACAHAGFVDKGLRIFQTM--REFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINS 456

Query: 259 MP-HPDTLTWNAMVSGYAQIGNLELA 283
           MP  P+   W A++      GN +LA
Sbjct: 457 MPMKPNAAVWGALLGACRIHGNFDLA 482



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 132/320 (41%), Gaps = 68/320 (21%)

Query: 263 DTLTWNAMVSGYA--QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
           D     A++  YA     N + AL  F  +P  N+  WN +I GC  N     AI  + +
Sbjct: 64  DHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGR 123

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYA---- 375
           M ++  +P++ T+ ++    S    +  G QIH  V K  I  DV I +A I MYA    
Sbjct: 124 MVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGR 182

Query: 376 --------------------------RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA-- 407
                                     +CG +  A+ +F +M  +KN+ SWN MI G A  
Sbjct: 183 LEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMP-VKNIGSWNVMINGLAKG 241

Query: 408 -----------------------------SHGFATEALELFKSMRSFKVLPTYITFISVL 438
                                        S G   EALE+F+ M+  +  P      SVL
Sbjct: 242 GNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVL 301

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           +AC++ G +++GR    + +    I+       +L+D+  + GRL+   ++ + M  E +
Sbjct: 302 AACSNIGAIDQGRW-VHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMK-ERE 359

Query: 499 KAVWGALLGACRVHNNVELA 518
              W A++G   +H   E A
Sbjct: 360 IFTWNAMIGGLAIHGRAEDA 379



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 113/273 (41%), Gaps = 58/273 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           MI+G  K   +  ARKLFDEM +RD +SW+ M+ GYIS   +G  +EA  +F  M     
Sbjct: 234 MINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYIS---AGRYKEALEIFQQMQREET 290

Query: 56  -PER---------------------------------DCVTWNTVISGYAKTGEMEEALR 81
            P R                                 D V    ++  YAK G ++    
Sbjct: 291 RPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWE 350

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP-GR---DSASLSALVSGLIQNGE 137
           +F  M  R + +WNAMI G   +G   +A+E F ++  GR   +  +L  +++     G 
Sbjct: 351 VFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGF 410

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           +D+  R+  +      G +  +  Y  ++   G+ G   EA  L + +P+          
Sbjct: 411 VDKGLRIF-QTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPM---------- 459

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
            K N   W +++      G+   A  + + +LE
Sbjct: 460 -KPNAAVWGALLGACRIHGNFDLAERVGKILLE 491


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 212/653 (32%), Positives = 329/653 (50%), Gaps = 105/653 (16%)

Query: 7   KRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTV 66
           K  ++  ARKLFD+MPQ+D  SWN MIS Y++    G L EAR LFD    +  +TW+++
Sbjct: 77  KSGQVNDARKLFDKMPQKDEYSWNTMISSYVN---VGRLVEARELFDGCSCKSSITWSSI 133

Query: 67  ISGYAKTGEMEEALRLFNSM-------------------PARNVVSWNAMISGF-LQNGD 106
           ISGY K G   EA  LF SM                    +  ++    MI GF ++NG 
Sbjct: 134 ISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGF 193

Query: 107 VANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166
             N       +         +    L +  E D    VL                +  ++
Sbjct: 194 EGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVL----------------WTAMV 237

Query: 167 VGYGQRGRVEEARKLFDKIP---VNCDR------------------GEG------NVRFK 199
            GY Q G   +A + F  +    V C++                  GE          F 
Sbjct: 238 TGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFG 297

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
            N+   ++++  YAK GD+ +A+ + E M + D  SWN+++ G++     EEA  LF  M
Sbjct: 298 SNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNM 357

Query: 260 P-----------------------HPDT--------------LTWNAMVSGYAQIGNLEL 282
                                   +P +              L  NA+V  YA+ G+++ 
Sbjct: 358 HGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDC 417

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F++M +K+++SW S++ G   N  +E ++K+F  M+V G  PD+   +SILS  + 
Sbjct: 418 AYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAE 477

Query: 343 IVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  L  G Q+H    K+ +     + N+L+ MYA+CG + +A  IF  M+ +K+V++W A
Sbjct: 478 LTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQ-VKDVITWTA 536

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           +I G A +G    +L+ + +M S    P +ITFI +L AC+HAGLV+EGR++F+ M   Y
Sbjct: 537 IIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVY 596

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           GI+P  EH+A ++D+ GR G+L++A  L+  M  +PD  VW +LL ACRVH N+ELA+ A
Sbjct: 597 GIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERA 656

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A  L ++EP N+ PYV+L NMY+   +W+D  ++R LMKS  I K  G SW++
Sbjct: 657 ATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLE 709



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 135/492 (27%), Positives = 230/492 (46%), Gaps = 71/492 (14%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD-------- 115
           N +++  +K+G++ +A +LF+ MP ++  SWN MIS ++  G +  A E FD        
Sbjct: 69  NQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSI 128

Query: 116 -------------------------RMPGRDSA--SLSALVS-----GLIQNGELDEAAR 143
                                    R+ G  ++  +L +++      GLIQ GE+     
Sbjct: 129 TWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHG-- 186

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
            +VK     +G E  V     L+  Y +   V EA  LF  +  +          ++N V
Sbjct: 187 FVVK-----NGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFD----------RKNHV 231

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDM---EEASNLF 256
            W +M+  YA+ GD   A E F  M    +E + +++ T+++    VL     E+     
Sbjct: 232 LWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFI 291

Query: 257 VKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           VK     +    +A+V  YA+ G+L+ A +  + M   ++VSWNS++ G   +   E A+
Sbjct: 292 VKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEAL 351

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMY 374
           +LF  M     K D +TF S+L+    +V       +H ++ KT   +   ++NAL+ MY
Sbjct: 352 RLFKNMHGRNMKIDDYTFPSVLNCC--VVGSINPKSVHGLIIKTGFENYKLVSNALVDMY 409

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           A+ G +  A  +FE+M L K+V+SW +++ G A +    E+L++F  MR   V P     
Sbjct: 410 AKTGDMDCAYTVFEKM-LEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIV 468

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
            S+LSACA   L+E G+Q     +   G+      + SLV +  + G L+DA  +   M 
Sbjct: 469 ASILSACAELTLLEFGKQVHLDFIKS-GLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQ 527

Query: 495 FEPDKAVWGALL 506
            + D   W A++
Sbjct: 528 VK-DVITWTAII 538



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 152/308 (49%), Gaps = 35/308 (11%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           +I   N ++   +K+G V  AR++F++M ++D +SWNTMIS Y++V  + EA  LF    
Sbjct: 64  SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCS 123

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
              ++TW++++SGY +                           GC+       A  LF  
Sbjct: 124 CKSSITWSSIISGYCKF--------------------------GCKVE-----AFDLFRS 152

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGA 379
           M++EG K  + T  S+L + S +  +  G  IH  V K     +V +   L+ MYA+C  
Sbjct: 153 MRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKC 212

Query: 380 IVEARIIFEEMKL-LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
           + EA  +F+ ++   KN V W AM+ G A +G   +A+E F+ M +  V     TF ++L
Sbjct: 213 VSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTIL 272

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           +AC+   L     +     + + G    +   ++LVD+  + G L++A ++++ M  + D
Sbjct: 273 TACSSV-LARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETME-DDD 330

Query: 499 KAVWGALL 506
              W +L+
Sbjct: 331 VVSWNSLM 338



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 109/233 (46%), Gaps = 47/233 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           ++  Y K  +M  A  +F++M ++DV+SW  +++GY  +      EE+  +F  M     
Sbjct: 405 LVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSH---EESLKIFCDMRVTGV 461

Query: 56  -PERDCV---------------------------------TWNTVISGYAKTGEMEEALR 81
            P++  V                                  +N++++ YAK G +++A  
Sbjct: 462 NPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADA 521

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F SM  ++V++W A+I G+ QNG   N+++F+D M       D  +   L+      G 
Sbjct: 522 IFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGL 581

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           +DE  +   +  ++  G +     Y  +I  +G+ G+++EA++L D++ V  D
Sbjct: 582 VDEGRKYFQQM-NKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPD 633


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 186/576 (32%), Positives = 310/576 (53%), Gaps = 66/576 (11%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDV 107
           AR +FD MP+R+  +WNT++S Y+K   + E  R+F++MP R++VSWN++IS +   G +
Sbjct: 63  ARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFL 122

Query: 108 ANAIEFFDRMPGRDSASLS--ALVSGLI---QNGELDEAARV---LVKCGSRCDGGEDLV 159
             +++ ++ M      +L+  AL + LI   + G +    +V   +VK G      +  V
Sbjct: 123 LQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGF-----QSYV 177

Query: 160 RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVV 219
              + L+  Y + G V  AR+ FD++P            ++N+V +N++I    +   + 
Sbjct: 178 FVGSPLVDMYSKTGLVFCARQAFDEMP------------EKNVVMYNTLIAGLMRCSRIE 225

Query: 220 SAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP------------------- 260
            +R++F  M E+D+ SW  MI+G+       EA +LF +M                    
Sbjct: 226 DSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACG 285

Query: 261 --------------------HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
                                 +    +A+V  Y +  +++ A   F++M  KN+VSW +
Sbjct: 286 GVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTA 345

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKT 359
           M+ G   N   E A+K+F  MQ  G +PD  T  S++S  + +  L  G Q H + +   
Sbjct: 346 MLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSG 405

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
           +I  + ++NAL+T+Y +CG+I ++  +F EM  +  V SW A++ G A  G A E L LF
Sbjct: 406 LISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEV-SWTALVSGYAQFGKANETLRLF 464

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           +SM +    P  +TFI VLSAC+ AGLV++G Q F+SM+ E+ I P  +H+  ++D+  R
Sbjct: 465 ESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSR 524

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRLE+A   I  MPF PD   W +LL +CR H N+E+ + AAE+L+K+EP N+  Y+LL
Sbjct: 525 AGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILL 584

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
            ++YA  G+W++   +R  M+   ++K  G SW+ +
Sbjct: 585 SSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKY 620



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/448 (28%), Positives = 226/448 (50%), Gaps = 48/448 (10%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N ++S YAK   +  A R+F+ MP RN+ SWN ++S + +   +      F  MP RD  
Sbjct: 48  NNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMV 107

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR-AYNTLIVGYGQRGRVEEARKLF 182
           S ++L+S     G L ++ +         +G  +L R A +T+++   ++G V    ++ 
Sbjct: 108 SWNSLISAYAGRGFLLQSVKAYNL--MLYNGPFNLNRIALSTMLILASKQGCVHLGLQVH 165

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
             +            F+  +   + ++  Y+K G V  AR+ F++M E++   +NT+I+G
Sbjct: 166 GHVV--------KFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAG 217

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
            +    +E++  LF  M   D+++W AM++G+ Q G    A+D F+ M  +NL       
Sbjct: 218 LMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENL------- 270

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP 362
                                   + D++TF S+L+   G++ L  G Q+H  + +T   
Sbjct: 271 ------------------------EMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQ 306

Query: 363 D-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
           D + + +AL+ MY +C +I  A  +F +M   KNVVSW AM+ G   +G++ EA+++F  
Sbjct: 307 DNIFVGSALVDMYCKCKSIKSAETVFRKMN-CKNVVSWTAMLVGYGQNGYSEEAVKIFCD 365

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRH 480
           M++  + P   T  SV+S+CA+   +EEG Q H +++V+  G+   I    +LV + G+ 
Sbjct: 366 MQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVS--GLISFITVSNALVTLYGKC 423

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           G +ED+  L   M +  D+  W AL+  
Sbjct: 424 GSIEDSHRLFSEMSY-VDEVSWTALVSG 450



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 144/308 (46%), Gaps = 36/308 (11%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           + F  N ++S Y     +  A  +F +MP  +  +WN ++S Y+++  L      F  MP
Sbjct: 43  EIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMP 102

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGM 350
            +++VSWNS+I+          ++K +  M   G    +R   S++L ++S    +HLG+
Sbjct: 103 TRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGL 162

Query: 351 QIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEM------------------- 390
           Q+H  V K      V + + L+ MY++ G +  AR  F+EM                   
Sbjct: 163 QVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCS 222

Query: 391 ------KLL-----KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
                 +L      K+ +SW AMI G   +G   EA++LF+ MR   +     TF SVL+
Sbjct: 223 RIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLT 282

Query: 440 ACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           AC     ++EG+Q H   +  +Y  +  I   ++LVD+  +   ++ A  + + M  + +
Sbjct: 283 ACGGVMALQEGKQVHAYIIRTDY--QDNIFVGSALVDMYCKCKSIKSAETVFRKMNCK-N 339

Query: 499 KAVWGALL 506
              W A+L
Sbjct: 340 VVSWTAML 347


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 203/619 (32%), Positives = 314/619 (50%), Gaps = 64/619 (10%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG--------------------- 43
           Y K      AR LFD +P R VVSWN + S Y+ S   G                     
Sbjct: 55  YAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSL 114

Query: 44  --------FLEEA-------RYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPA 88
                    LE++        YL  +  + D  + N ++  YAK G +E+A  +F+ +  
Sbjct: 115 SSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAK 174

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-SASLSALVSGL--IQNGELDEAARVL 145
            ++VSWNA+I+G + +     A+E    M       ++  L S L       L E  R L
Sbjct: 175 PDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQL 234

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
                + D G D       LI  Y +   +++AR +F  +P            +R++++W
Sbjct: 235 HSSLIKMDMGSDSFLGVG-LIDMYSKCNSMDDARLVFKLMP------------ERDMIAW 281

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP--- 262
           N++I  +++  +   A  +F  M         T +S  +  +   +A N   +  H    
Sbjct: 282 NAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQA-NYMCRQIHALSL 340

Query: 263 ------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
                 D    N+++  Y + G++E A   F+  P  +LV + S++     +   E A++
Sbjct: 341 KSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALR 400

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYA 375
           L+++MQ  G KPD    SS+L+  + +     G Q+H  + K   + D+   N+L+ MYA
Sbjct: 401 LYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYA 460

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +CG+I +A   F  + + + +VSW+AMIGG A HG+  EAL+LFK M    V P +IT +
Sbjct: 461 KCGSIEDASCAFSRIPV-RGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLV 519

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           SVL AC HAGLV E + +F SM   +GIEP  EH+A ++D++GR G+LE AM+L+  MPF
Sbjct: 520 SVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPF 579

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           + +  VWGALLGA R+H N++L + AAE L+ +EPE S  +VLL N+YA VG WD    V
Sbjct: 580 QANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARV 639

Query: 556 RLLMKSNNIKKPTGYSWVD 574
           R LMK   +KK  G SW++
Sbjct: 640 RRLMKDGKVKKEPGMSWLE 658



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 131/503 (26%), Positives = 238/503 (47%), Gaps = 47/503 (9%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           + D    N+++  YAK G   +A  LF+++P R+VVSWNA+ S ++ +     A+  F  
Sbjct: 42  DSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHD 101

Query: 117 M------PGRDS-ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
           M      P   S +S+  + +GL  + +  +    L+K G   D       + N L+  Y
Sbjct: 102 MVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDA-----FSANALVDMY 156

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS-----AREI 224
            + G +E+A  +FD+I             K +IVSWN++I     AG V+      A E+
Sbjct: 157 AKVGILEDASSVFDEIA------------KPDIVSWNAII-----AGCVLHEYHHRALEL 199

Query: 225 FEQM----LERDTFSWNTMISGYIHVLDMEEASNL---FVKMPH-PDTLTWNAMVSGYAQ 276
             +M    +  + F+ ++ +     +   E    L    +KM    D+     ++  Y++
Sbjct: 200 LREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSK 259

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
             +++ A   FK MP++++++WN++I+G   N++ E A  LF  M  EG   ++ T S++
Sbjct: 260 CNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTV 319

Query: 337 LSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           L   + +   ++  QIH +  K+    D  + N+LI  Y +CG + +A  +FEE  ++ +
Sbjct: 320 LKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIV-D 378

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           +V + +++   A  G   EAL L+  M+   + P      S+L+ACA     E+G+Q   
Sbjct: 379 LVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQ-VH 437

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
             + ++G    I    SLV++  + G +EDA      +P       W A++G    H   
Sbjct: 438 VHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVR-GIVSWSAMIGGLAQHGYG 496

Query: 516 ELAQVAAEALMKVE-PENSTPYV 537
           + A    + ++KV  P N    V
Sbjct: 497 KEALQLFKQMLKVGVPPNHITLV 519



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 204/467 (43%), Gaps = 80/467 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----------------------- 37
           ++  Y K   +  A  +FDE+ + D+VSWN +I+G +                       
Sbjct: 152 LVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPN 211

Query: 38  ---------SSRGSGFLEEARYLFDIMPERDCVTWN----TVISGYAKTGEMEEALRLFN 84
                    +  G    E  R L   + + D  + +     +I  Y+K   M++A  +F 
Sbjct: 212 MFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFK 271

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSAL---VSGLIQNGE 137
            MP R++++WNA+ISG  QN +   A   F  M     G +  +LS +   ++ L  N  
Sbjct: 272 LMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYM 331

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
             +   + +K G   D         N+LI  YG+ G VE+A ++F++ P+          
Sbjct: 332 CRQIHALSLKSGFEFDN-----YVVNSLIDTYGKCGHVEDATRVFEESPI---------- 376

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEAS 253
              ++V + S++  YA+ G    A  ++ +M +R    D+F  +++++    +   E+  
Sbjct: 377 --VDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGK 434

Query: 254 NLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            + V +       D    N++V+ YA+ G++E A   F R+P + +VSW++MI G   + 
Sbjct: 435 QVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHG 494

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM---QIHQMVTKTVIPDV-P 365
             + A++LF QM   G  P+  T  S+L   +     H G+     H   +  ++  + P
Sbjct: 495 YGKEALQLFKQMLKVGVPPNHITLVSVLCACN-----HAGLVAEAKHYFNSMKILFGIEP 549

Query: 366 INN---ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           +      +I +  R G +  A  +  +M    N + W A++G    H
Sbjct: 550 MQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIH 596



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 172/402 (42%), Gaps = 77/402 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +I  Y K   M  AR +F  MP+RD+++WN +ISG+  +      EEA  LF +M     
Sbjct: 253 LIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEED---EEAASLFPLMHTEGI 309

Query: 57  -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                                              E D    N++I  Y K G +E+A R
Sbjct: 310 GFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATR 369

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F   P  ++V + ++++ + Q+G    A+  +  M  R    DS   S+L++       
Sbjct: 370 VFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSA 429

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
            ++  +V   ++K G   D     + A N+L+  Y + G +E+A   F +IPV       
Sbjct: 430 YEQGKQVHVHILKFGFMSD-----IFAGNSLVNMYAKCGSIEDASCAFSRIPV------- 477

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMISGYIHVLDME 250
                R IVSW++MI   A+ G    A ++F+QML+     +  +  +++    H   + 
Sbjct: 478 -----RGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVA 532

Query: 251 EASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAG 304
           EA + F  M       P    +  M+    + G LE A++   +MP Q N + W +++  
Sbjct: 533 EAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGA 592

Query: 305 CETNKDYE-GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
              +K+ + G     + + +E EK   H   + +  S G+ D
Sbjct: 593 ARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWD 634



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 7/216 (3%)

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGA 379
           M + G K +   F S+L   +   DL LG Q+H +V  T    D  + N+L+ +YA+CG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
             +AR +F+ +   ++VVSWNA+           EA+ LF  M    + P   +  S+++
Sbjct: 61  FGDARSLFDAIP-DRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMIN 119

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
            C       +GR+    ++ + G +       +LVD+  + G LEDA  +   +  +PD 
Sbjct: 120 VCTGLEDSVQGRKIHGYLI-KLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPDI 177

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
             W A++  C +H   E    A E L ++      P
Sbjct: 178 VSWNAIIAGCVLH---EYHHRALELLREMNKSGMCP 210


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 213/644 (33%), Positives = 311/644 (48%), Gaps = 124/644 (19%)

Query: 13  KARKLFDEM----PQRDVVSWNVMISGYI------------------------------- 37
           +AR++FDE      +R+ VSWN MIS Y+                               
Sbjct: 153 EARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVV 212

Query: 38  -SSRGSGFLEEARYLFDIMP----ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV 92
            +  GS  LE  R +   +     E+D  T N ++  Y+K G++E A  +F  MPA +VV
Sbjct: 213 NACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVV 272

Query: 93  SWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRC 152
           SWNA ISG + +G    A+E   +M            SGL+ N  +   + VL  C    
Sbjct: 273 SWNAFISGCVTHGHDHRALELLLQMKS----------SGLVPN--VFTLSSVLKACAG-- 318

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
                   A+N   +G    G + +A   FD+                       ++  Y
Sbjct: 319 ------AGAFN---LGRQIHGFMVKAVADFDEFVAV------------------GLVDMY 351

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----------- 261
           AK G +  AR++F+ M  RD   WN +ISG  H     E  +LF +M             
Sbjct: 352 AKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTT 411

Query: 262 ------------------------------PDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
                                          D+   N ++  Y + G L+ A+  FK   
Sbjct: 412 LASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESR 471

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
             +++S  +M+         E AIKLF+QM  +G +PD    SS+L+  + +     G Q
Sbjct: 472 SDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQ 531

Query: 352 IH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +H  ++ +    DV   NAL+  YA+CG+I +A + F  +   + +VSW+AMIGG A HG
Sbjct: 532 VHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPE-RGIVSWSAMIGGLAQHG 590

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
               AL+LF  M    V P +IT  SVLSAC HAGLV++ +++F+SM   +GI+   EH+
Sbjct: 591 HGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHY 650

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
           A ++DI+GR G+LEDAM+L+  MPF+ + AVWGALLGA RVH + EL ++AAE L  +EP
Sbjct: 651 ACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEP 710

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           E S  +VLL N YA  G WD+  +VR LMK +N+KK    SWV+
Sbjct: 711 EKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVE 754



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 150/548 (27%), Positives = 246/548 (44%), Gaps = 81/548 (14%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +++ Y++      A  +F+ +P    VSW+++++ +  NG   +A+  F  M GR   
Sbjct: 41  NHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGR--- 97

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL------------VRAYNTLIVGYGQ 171
                  G+  N   + A  V++KC      G  +            V   N L+  YG 
Sbjct: 98  -------GVPCN---EFALPVVLKCAPDVRFGAQVHALAVATRLVHDVFVANALVAVYGG 147

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML-- 229
            G V+EAR++FD+           V  +RN VSWN+MI  Y K      A  +F +M+  
Sbjct: 148 FGMVDEARRMFDEYV--------GVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWS 199

Query: 230 -ER-DTFSWNTMISGYIHVLDME---EASNLFVKMPH-PDTLTWNAMVSGYAQIGNLELA 283
            ER + F ++ +++      D+E   +     V+  +  D  T NA+V  Y+++G++E+A
Sbjct: 200 GERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMA 259

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F++MP  ++VSWN+ I+GC T+     A++L +QM+  G  P+  T SS+L   +G 
Sbjct: 260 ATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGA 319

Query: 344 VDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
              +LG QIH  + K V   D  +   L+ MYA+ G + +AR +F+ M   ++++ WNA+
Sbjct: 320 GAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMP-RRDLILWNAL 378

Query: 403 IGGCASHGFATEALELFKSMRS--FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           I GC+  G   E L LF  MR     +     T  SVL + A +  +   RQ   ++  +
Sbjct: 379 ISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQ-VHALAEK 437

Query: 461 YGIEPRIEHFASLVDIVGRHGRL-------------------------------EDAMDL 489
            G+         L+D   + G+L                               EDA+ L
Sbjct: 438 IGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKL 497

Query: 490 IKGM---PFEPDKAVWGALLGACRVHNNVELA-QVAAEALMKVEPENSTPYVLLYNMYAD 545
              M     EPD  V  +LL AC   +  E   QV A  + +    +      L   YA 
Sbjct: 498 FVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAK 557

Query: 546 VGRWDDAN 553
            G  +DA+
Sbjct: 558 CGSIEDAD 565



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 139/578 (24%), Positives = 245/578 (42%), Gaps = 93/578 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +++ Y + R  + AR +FDE+P    VSW+ +++ Y     +G   +A   F  M  R  
Sbjct: 43  LLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAY---SNNGMPRDALLAFRAMRGRGV 99

Query: 59  ----------------------------------DCVTWNTVISGYAKTGEMEEALRLFN 84
                                             D    N +++ Y   G ++EA R+F+
Sbjct: 100 PCNEFALPVVLKCAPDVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFD 159

Query: 85  SMPA----RNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNG 136
                   RN VSWN MIS +++N    +AI  F  M       +    S +V+    + 
Sbjct: 160 EYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSR 219

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
           +L EA R +     R    +D+  A N L+  Y + G +E A  +F+K+P          
Sbjct: 220 DL-EAGRQVHGAVVRTGYEKDVFTA-NALVDMYSKLGDIEMAATVFEKMPAA-------- 269

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG---------- 242
               ++VSWN+ I      G    A E+  QM    L  + F+ ++++            
Sbjct: 270 ----DVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLG 325

Query: 243 -YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
             IH   ++  ++        D      +V  YA+ G L+ A   F  MP+++L+ WN++
Sbjct: 326 RQIHGFMVKAVADF-------DEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNAL 378

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPD--RHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           I+GC  +  +   + LF +M+ EG   D  R T +S+L  ++    +    Q+H +  K 
Sbjct: 379 ISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKI 438

Query: 360 -VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
            ++ D  + N LI  Y +CG +  A  +F+E +   +++S   M+   +      +A++L
Sbjct: 439 GLLSDSHVINGLIDSYWKCGQLDYAIKVFKESR-SDDIISSTTMMTALSQCDHGEDAIKL 497

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA--SLVDI 476
           F  M    + P      S+L+AC      E+G+Q    ++     +   + FA  +LV  
Sbjct: 498 FVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKR---QFTSDVFAGNALVYA 554

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
             + G +EDA     G+P E     W A++G    H +
Sbjct: 555 YAKCGSIEDADMAFSGLP-ERGIVSWSAMIGGLAQHGH 591



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 17/184 (9%)

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
           T  S L+       L  G  +H  + K+ +     +N L+T+Y+RC     AR +F+E+ 
Sbjct: 6   TIGSALARFGTSRSLFAGAHLHSHLLKSGLL-AGFSNHLLTLYSRCRLPSAARAVFDEIP 64

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
              + VSW++++   +++G   +AL  F++MR  + +P     + V+  CA         
Sbjct: 65  DPCH-VSWSSLVTAYSNNGMPRDALLAFRAMRG-RGVPCNEFALPVVLKCA-------PD 115

Query: 452 QHFKSMVNEYGIEPRIEHFA----SLVDIVGRHGRLEDA---MDLIKGMPFEPDKAVWGA 504
             F + V+   +  R+ H      +LV + G  G +++A    D   G+  E +   W  
Sbjct: 116 VRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNT 175

Query: 505 LLGA 508
           ++ A
Sbjct: 176 MISA 179


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 185/521 (35%), Positives = 282/521 (54%), Gaps = 45/521 (8%)

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           +DC   +  IS       +   +  F  M   NV  +NAMI GF+  G    A++ +  M
Sbjct: 166 QDCFLVHQFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHM 225

Query: 118 PGRDSA-SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               +    S   S L++             C   C              V  GQ     
Sbjct: 226 LEESNVLPTSYTFSSLVK------------ACTFMC-------------AVELGQM---- 256

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
                     V+C   +    F+ ++    +++  Y+K   +  AR++F++M ERD F+W
Sbjct: 257 ----------VHCHIWKKG--FESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAW 304

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
             M+S    V DM+ A  LF +MP  +T TWN M+ GYA++GN+E A   F +MP K+++
Sbjct: 305 TAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDII 364

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SW +MI     NK Y+ A+ ++ +M++ G  PD  T S++ S  + I  L LG +IH  V
Sbjct: 365 SWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYV 424

Query: 357 -TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            ++ +  DV I +AL+ MYA+CG++  + +IF ++   KN+  WNA+I G A HG+A +A
Sbjct: 425 MSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTD-KNLYCWNAVIEGLAVHGYAEKA 483

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L +F  M   K++P  +TFIS+LSAC HAGLV+EGR  F SM  +Y I P I H+  +VD
Sbjct: 484 LRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVD 543

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++ + G L +A++LIK M FEP+  +WGALL  C++H N E+A+ A E LM +EP NS  
Sbjct: 544 MLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGH 603

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNI-KKPTGYSWVDF 575
           Y LL +MYA+   W +   +R +MK   + KK  G SW++ 
Sbjct: 604 YNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIEL 644



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 159/332 (47%), Gaps = 39/332 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K   +++ARK+FDEM +RD  +W  M+S        G ++ AR LF+ MPER+ 
Sbjct: 276 LVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSALARV---GDMDSARKLFEEMPERNT 332

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            TWNT+I GYA+ G +E A  LFN MP ++++SW  MI+ + QN    +A+  +  M   
Sbjct: 333 ATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLN 392

Query: 121 ----DSASLSALVSGLIQNGELD---EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
               D  ++S + S     G L+   E    ++  G   D     V   + L+  Y + G
Sbjct: 393 GIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLD-----VYIGSALVDMYAKCG 447

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
            ++ +  +F K+              +N+  WN++I   A  G    A  +F  ++ER+ 
Sbjct: 448 SLDLSLLIFFKLT------------DKNLYCWNAVIEGLAVHGYAEKALRMF-AIMEREK 494

Query: 234 FSWN-----TMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELA 283
              N     +++S   H   ++E  + F+ M       PD   +  MV   ++ G L  A
Sbjct: 495 IMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEA 554

Query: 284 LDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
           L+  K M  + N + W +++ GC+ + + E A
Sbjct: 555 LELIKSMEFEPNSIIWGALLNGCKLHGNCEIA 586


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 185/523 (35%), Positives = 295/523 (56%), Gaps = 35/523 (6%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSAS 124
           YAK     +A R+F+ MP R+ V+WNA+++G+ +NG    A+E   RM        DS +
Sbjct: 104 YAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSIT 163

Query: 125 LSALV---SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           L +++   +         EA    ++ G      E+LV     ++  Y + G +  AR +
Sbjct: 164 LVSVLPACANARALAACREAHAFAIRSGL-----EELVNVATAILDAYCKCGDIRAARVV 218

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI- 240
           FD +P             +N VSWN+MI  YA+ GD   A  +F +M+E      +  + 
Sbjct: 219 FDWMPT------------KNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVL 266

Query: 241 -----SGYIHVLDME-EASNLFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQK 293
                 G +  LD       L V++     ++  NA+++ Y++   ++LA   F  + ++
Sbjct: 267 AALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRR 326

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
             VSWN+MI GC  N   E A++LF +MQ+E  KPD  T  S++   + I D      IH
Sbjct: 327 TQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIH 386

Query: 354 QMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
               +  +  DV +  ALI MYA+CG +  ARI+F   +  ++V++WNAMI G  SHGF 
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARE-RHVITWNAMIHGYGSHGFG 445

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
             A+ELF+ M+S  ++P   TF+SVLSAC+HAGLV+EGR++F SM  +YG+EP +EH+ +
Sbjct: 446 KAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGT 505

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           +VD++GR G+L++A   I+ MP +P  +V+GA+LGAC++H NVELA+ +A+ + ++ P+ 
Sbjct: 506 MVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQE 565

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
              +VLL N+YA+   W D   VR  M+ N ++K  G+S +  
Sbjct: 566 GVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQL 608



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 206/460 (44%), Gaps = 73/460 (15%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------RGSGFLEEARY 50
           Y K R  A AR++FD MP RD V+WN +++GY  +                 G   ++  
Sbjct: 104 YAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSIT 163

Query: 51  LFDIMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSMP 87
           L  ++P                       E        ++  Y K G++  A  +F+ MP
Sbjct: 164 LVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMP 223

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRDSASLSALVSGLIQNGE---LDEAA 142
            +N VSWNAMI G+ QNGD   A+  F+RM   G D   +S L + L   GE   LDE  
Sbjct: 224 TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVL-AALQACGELGCLDEGM 282

Query: 143 RV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           RV   LV+ G   +     V   N LI  Y +  RV+ A  +FD++             +
Sbjct: 283 RVHELLVRIGLDSN-----VSVMNALITMYSKCKRVDLASHVFDELD------------R 325

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA--- 252
           R  VSWN+MI+  A+ G    A  +F +M    ++ D+F+  ++I     + D  +A   
Sbjct: 326 RTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWI 385

Query: 253 SNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
               +++    D     A++  YA+ G + +A   F    ++++++WN+MI G  ++   
Sbjct: 386 HGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFG 445

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINNA 369
           + A++LF +M+  G  P+  TF S+LS  S  G+VD              + P +     
Sbjct: 446 KAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGT 505

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           ++ +  R G + EA    ++M +   +  + AM+G C  H
Sbjct: 506 MVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLH 545



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 149/311 (47%), Gaps = 17/311 (5%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           + L   A+ + YA+      A   F RMP ++ V+WN+++AG   N     A+++ ++MQ
Sbjct: 93  EALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQ 152

Query: 323 -VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAI 380
             EGE+PD  T  S+L   +    L    + H    ++ + + V +  A++  Y +CG I
Sbjct: 153 EEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDI 212

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
             AR++F+ M   KN VSWNAMI G A +G + EAL LF  M    V  T ++ ++ L A
Sbjct: 213 RAARVVFDWMP-TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQA 271

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C   G ++EG +  + +V   G++  +    +L+ +  +  R++ A  +   +     + 
Sbjct: 272 CGELGCLDEGMRVHELLV-RIGLDSNVSVMNALITMYSKCKRVDLASHVFDELD-RRTQV 329

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTP----YVLLYNMYADV-----GRWDD 551
            W A++  C  +     ++ A     +++ EN  P     V +    AD+      RW  
Sbjct: 330 SWNAMILGCAQNG---CSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIH 386

Query: 552 ANEVRLLMKSN 562
              +RL +  +
Sbjct: 387 GYSIRLHLDQD 397



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 155/367 (42%), Gaps = 70/367 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++  Y K  ++  AR +FD MP ++ VSWN MI GY     +G   EA  LF+ M E   
Sbjct: 202 ILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ---NGDSREALALFNRMVEEGV 258

Query: 59  -------------------------------------DCVTWNTVISGYAKTGEMEEALR 81
                                                +    N +I+ Y+K   ++ A  
Sbjct: 259 DVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASH 318

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGE 137
           +F+ +  R  VSWNAMI G  QNG   +A+  F RM       DS +L +++  L    +
Sbjct: 319 VFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISD 378

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
             + AR +     R    +D V     LI  Y + GRV  AR LF            N  
Sbjct: 379 PLQ-ARWIHGYSIRLHLDQD-VYVLTALIDMYAKCGRVNIARILF------------NSA 424

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
            +R++++WN+MI  Y   G   +A E+FE+M    +  +  ++ +++S   H   ++E  
Sbjct: 425 RERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGR 484

Query: 254 NLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCET 307
             F  M       P    +  MV    + G L+ A  F ++MP    L  + +M+  C+ 
Sbjct: 485 EYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKL 544

Query: 308 NKDYEGA 314
           +K+ E A
Sbjct: 545 HKNVELA 551



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 3/131 (2%)

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINN 368
           D   A+  F+ M   G  P   TF+S+L + +   DL  G  +H Q+  + +  +     
Sbjct: 39  DLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAAT 98

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK-V 427
           AL  MYA+C    +AR +F+ M  +++ V+WNA++ G A +G A  A+E+   M+  +  
Sbjct: 99  ALANMYAKCRRPADARRVFDRMP-VRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGE 157

Query: 428 LPTYITFISVL 438
            P  IT +SVL
Sbjct: 158 RPDSITLVSVL 168



 Score = 45.4 bits (106), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 16/164 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K   +  AR LF+   +R V++WN MI GY S    GF + A  LF+ M     
Sbjct: 404 LIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGS---HGFGKAAVELFEEMKSIGI 460

Query: 61  V----TWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
           V    T+ +V+S  +  G ++E    F SM         +  +  M+    + G +  A 
Sbjct: 461 VPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAW 520

Query: 112 EFFDRMPGRDSASLSALVSG---LIQNGEL-DEAARVLVKCGSR 151
            F  +MP     S+   + G   L +N EL +E+A+ + + G +
Sbjct: 521 AFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQ 564


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 212/693 (30%), Positives = 346/693 (49%), Gaps = 140/693 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSR-------------------- 40
           M++GY K+  ++ A +LFD MP+RDV SWN ++SGY  +R                    
Sbjct: 77  MMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLP 136

Query: 41  -------------GSGFLEEARYL------FDIMPERDCVTWNTVISGYAKTGEMEEALR 81
                          G  E A  L      FD   + D  T   ++  + + G ++ A R
Sbjct: 137 NAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVET--ALVDMFVRCGYVDFASR 194

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           LF+ +    +   N+M++G+ +   + +AIE+F+ M  RD  S + +++ L Q+G + EA
Sbjct: 195 LFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREA 254

Query: 142 ARVLV---KCGSRCDG------------------GEDL----VRAY--------NTLIVG 168
             ++V   + G R D                   G+ L    +R+         + LI  
Sbjct: 255 LGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIEL 314

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI------MCYAKAGDVVSAR 222
           Y + G  +EA+++F+ +              RN VSW  +I       C++K      + 
Sbjct: 315 YAKCGSFKEAKRVFNSLQ------------DRNSVSWTVLIGGSLQYECFSK------SV 356

Query: 223 EIFEQM----LERDTFSWNTMISGYIHVLD------------------------------ 248
           E+F QM    +  D F+  T+ISG  + +D                              
Sbjct: 357 ELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLY 416

Query: 249 -----MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                ++ A  +F  M   D ++W +M++ Y+QIGN+  A +FF  M  +N ++WN+M+ 
Sbjct: 417 AKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLG 476

Query: 304 GCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQ-IHQMVTKTVI 361
               +   E  +K++  M  + +  PD  T+ ++    + I    LG Q I   V   +I
Sbjct: 477 AYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLI 536

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
            +V + NA ITMY++CG I EA+ +F+ +   K+VVSWNAMI G + HG   +A + F  
Sbjct: 537 LNVSVANAAITMYSKCGRISEAQKLFDLLN-GKDVVSWNAMITGYSQHGMGKQAAKTFDD 595

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M S    P YI++++VLS C+H+GLV+EG+ +F  M   +GI P +EHF+ +VD++GR G
Sbjct: 596 MLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAG 655

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
            L +A DLI  MP +P   VWGALL AC++H N ELA++AA+ + +++  +S  Y+LL  
Sbjct: 656 HLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAK 715

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +Y+D G+ DD+ +VR LM+   IKK  GYSW++
Sbjct: 716 IYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWME 748



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 154/618 (24%), Positives = 259/618 (41%), Gaps = 111/618 (17%)

Query: 8   RREMAKARKLFDEMPQRDVVS----WNVMISGYISSRGSGFLEEARYLFDI-MPERDCVT 62
           R  +A AR L   +    + S     N ++  Y S    G L +AR L    + E + +T
Sbjct: 17  RGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSC---GALSDARRLLRADIKEPNVIT 73

Query: 63  WNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS 122
            N +++GYAK G + +A  LF+ MP R+V SWN ++SG+ Q     + +E F  M     
Sbjct: 74  HNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGD 133

Query: 123 ASLSALVSGLIQN--GELD--EAARVLVKCGSRCD--GGEDLVRAYNTLIVGYGQRGRVE 176
           +  +A     +    G L   E A  L+    + D  G  D+  A   + V   + G V+
Sbjct: 134 SLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFV---RCGYVD 190

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            A +LF +I             +  I   NSM+  YAK   +  A E FE M ERD  SW
Sbjct: 191 FASRLFSQIE------------RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSW 238

Query: 237 NTMISGYIHVLDMEEASNLFVKM------------------------------------- 259
           N MI+       + EA  L V+M                                     
Sbjct: 239 NMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIR 298

Query: 260 --PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
             P  D    +A++  YA+ G+ + A   F  +  +N VSW  +I G    + +  +++L
Sbjct: 299 SLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVEL 358

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYAR 376
           F QM+ E    D+   ++++S     +DL LG Q+H +  K+     + ++N+LI++YA+
Sbjct: 359 FNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAK 418

Query: 377 CGAIVEARIIFEEMKL------------------------------LKNVVSWNAMIGGC 406
           CG +  A  +F  M                                 +N ++WNAM+G  
Sbjct: 419 CGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAY 478

Query: 407 ASHGFATEALELFKSMRSFK-VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
             HG   + L+++ +M S K V P ++T++++   CA  G  + G Q     V   G+  
Sbjct: 479 IQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKA-GLIL 537

Query: 466 RIEHFASLVDIVGRHGRLEDA---MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
            +    + + +  + GR+ +A    DL+ G     D   W A++     H    + + AA
Sbjct: 538 NVSVANAAITMYSKCGRISEAQKLFDLLNG----KDVVSWNAMITGYSQHG---MGKQAA 590

Query: 523 EALMKVEPENSTPYVLLY 540
           +    +  + + P  + Y
Sbjct: 591 KTFDDMLSKGAKPDYISY 608



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 225/496 (45%), Gaps = 65/496 (13%)

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           + L+      G L +A R+L     R D  E  V  +N ++ GY ++G + +A +LFD++
Sbjct: 43  NTLLHAYFSCGALSDARRLL-----RADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRM 97

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMI--------------------------------MCYA 213
           P            +R++ SWN+++                                 C  
Sbjct: 98  P------------RRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVM 145

Query: 214 KAGDVVSAREIFEQMLER--------DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           K+   +  RE+  Q+L          D      ++  ++    ++ AS LF ++  P   
Sbjct: 146 KSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIF 205

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
             N+M++GYA++  ++ A+++F+ M ++++VSWN MIA    +     A+ L ++M  +G
Sbjct: 206 CRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKG 265

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEAR 384
            + D  T++S L+  + +  L  G Q+H  V +++    P + +ALI +YA+CG+  EA+
Sbjct: 266 VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAK 325

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F  ++  +N VSW  +IGG   +   ++++ELF  MR+  +        +++S C + 
Sbjct: 326 RVFNSLQ-DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNR 384

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
             +  GRQ   S+  + G    I    SL+ +  + G L++A  +   M  E D   W +
Sbjct: 385 MDLCLGRQ-LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS-ERDIVSWTS 442

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           ++ A     N+  A+   E    ++  N+  +  +   Y   G  +D  ++   M S   
Sbjct: 443 MITAYSQIGNIIKAR---EFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKD 499

Query: 565 KKPTGYSWVD-FSPCG 579
             P   ++V  F  C 
Sbjct: 500 VTPDWVTYVTLFRGCA 515


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 212/693 (30%), Positives = 346/693 (49%), Gaps = 140/693 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSR-------------------- 40
           M++GY K+  ++ A +LFD MP+RDV SWN ++SGY  +R                    
Sbjct: 77  MMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLP 136

Query: 41  -------------GSGFLEEARYL------FDIMPERDCVTWNTVISGYAKTGEMEEALR 81
                          G  E A  L      FD   + D  T   ++  + + G ++ A R
Sbjct: 137 NAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVET--ALVDMFVRCGYVDFASR 194

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           LF+ +    +   N+M++G+ +   + +AIE+F+ M  RD  S + +++ L Q+G + EA
Sbjct: 195 LFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREA 254

Query: 142 ARVLV---KCGSRCDG------------------GEDL----VRAY--------NTLIVG 168
             ++V   + G R D                   G+ L    +R+         + LI  
Sbjct: 255 LGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIEL 314

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI------MCYAKAGDVVSAR 222
           Y + G  +EA+++F+ +              RN VSW  +I       C++K      + 
Sbjct: 315 YAKCGSFKEAKRVFNSLQ------------DRNSVSWTVLIGGSLQYECFSK------SV 356

Query: 223 EIFEQM----LERDTFSWNTMISGYIHVLD------------------------------ 248
           E+F QM    +  D F+  T+ISG  + +D                              
Sbjct: 357 ELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLY 416

Query: 249 -----MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                ++ A  +F  M   D ++W +M++ Y+QIGN+  A +FF  M  +N ++WN+M+ 
Sbjct: 417 AKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLG 476

Query: 304 GCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQ-IHQMVTKTVI 361
               +   E  +K++  M  + +  PD  T+ ++    + I    LG Q I   V   +I
Sbjct: 477 AYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLI 536

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
            +V + NA ITMY++CG I EA+ +F+ +   K+VVSWNAMI G + HG   +A + F  
Sbjct: 537 LNVSVANAAITMYSKCGRISEAQKLFDLLN-GKDVVSWNAMITGYSQHGMGKQAAKTFDD 595

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M S    P YI++++VLS C+H+GLV+EG+ +F  M   +GI P +EHF+ +VD++GR G
Sbjct: 596 MLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAG 655

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
            L +A DLI  MP +P   VWGALL AC++H N ELA++AA+ + +++  +S  Y+LL  
Sbjct: 656 HLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAK 715

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +Y+D G+ DD+ +VR LM+   IKK  GYSW++
Sbjct: 716 IYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWME 748



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 154/618 (24%), Positives = 260/618 (42%), Gaps = 111/618 (17%)

Query: 8   RREMAKARKLFDEMPQRDVVS----WNVMISGYISSRGSGFLEEARYLFDI-MPERDCVT 62
           R  +A AR L   +    + S     N ++  Y+S    G L +AR L    + E + +T
Sbjct: 17  RGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSC---GALSDARRLLRADIKEPNVIT 73

Query: 63  WNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS 122
            N +++GYAK G + +A  LF+ MP R+V SWN ++SG+ Q     + +E F  M     
Sbjct: 74  HNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGD 133

Query: 123 ASLSALVSGLIQN--GELD--EAARVLVKCGSRCD--GGEDLVRAYNTLIVGYGQRGRVE 176
           +  +A     +    G L   E A  L+    + D  G  D+  A   + V   + G V+
Sbjct: 134 SLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFV---RCGYVD 190

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            A +LF +I             +  I   NSM+  YAK   +  A E FE M ERD  SW
Sbjct: 191 FASRLFSQIE------------RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSW 238

Query: 237 NTMISGYIHVLDMEEASNLFVKM------------------------------------- 259
           N MI+       + EA  L V+M                                     
Sbjct: 239 NMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIR 298

Query: 260 --PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
             P  D    +A++  YA+ G+ + A   F  +  +N VSW  +I G    + +  +++L
Sbjct: 299 SLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVEL 358

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYAR 376
           F QM+ E    D+   ++++S     +DL LG Q+H +  K+     + ++N+LI++YA+
Sbjct: 359 FNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAK 418

Query: 377 CGAIVEARIIFEEMK------------------------------LLKNVVSWNAMIGGC 406
           CG +  A  +F  M                                 +N ++WNAM+G  
Sbjct: 419 CGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAY 478

Query: 407 ASHGFATEALELFKSMRSFK-VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
             HG   + L+++ +M S K V P ++T++++   CA  G  + G Q     V   G+  
Sbjct: 479 IQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKA-GLIL 537

Query: 466 RIEHFASLVDIVGRHGRLEDA---MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
            +    + + +  + GR+ +A    DL+ G     D   W A++     H    + + AA
Sbjct: 538 NVSVANAAITMYSKCGRISEAQKLFDLLNG----KDVVSWNAMITGYSQHG---MGKQAA 590

Query: 523 EALMKVEPENSTPYVLLY 540
           +    +  + + P  + Y
Sbjct: 591 KTFDDMLSKGAKPDYISY 608



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 225/496 (45%), Gaps = 65/496 (13%)

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           + L+   +  G L +A R+L     R D  E  V  +N ++ GY ++G + +A +LFD++
Sbjct: 43  NTLLHAYLSCGALSDARRLL-----RADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRM 97

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMI--------------------------------MCYA 213
           P            +R++ SWN+++                                 C  
Sbjct: 98  P------------RRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVM 145

Query: 214 KAGDVVSAREIFEQMLER--------DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           K+   +  RE+  Q+L          D      ++  ++    ++ AS LF ++  P   
Sbjct: 146 KSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIF 205

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
             N+M++GYA++  ++ A+++F+ M ++++VSWN MIA    +     A+ L ++M  +G
Sbjct: 206 CRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKG 265

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEAR 384
            + D  T++S L+  + +  L  G Q+H  V +++    P + +ALI +YA+CG+  EA+
Sbjct: 266 VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAK 325

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F  ++  +N VSW  +IGG   +   ++++ELF  MR+  +        +++S C + 
Sbjct: 326 RVFNSLQ-DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNR 384

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
             +  GRQ   S+  + G    I    SL+ +  + G L++A  +   M  E D   W +
Sbjct: 385 MDLCLGRQ-LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS-ERDIVSWTS 442

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           ++ A     N+  A+   E    +   N+  +  +   Y   G  +D  ++   M S   
Sbjct: 443 MITAYSQIGNIIKAR---EFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKD 499

Query: 565 KKPTGYSWVD-FSPCG 579
             P   ++V  F  C 
Sbjct: 500 VTPDWVTYVTLFRGCA 515


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 187/500 (37%), Positives = 276/500 (55%), Gaps = 47/500 (9%)

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGEL 138
           AL++F+S+P  NV  WN +I G L+N  +  AI F+ RM                    +
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-------------------I 126

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG-NVR 197
           D                      Y TL         V+E R++   +      G G +V 
Sbjct: 127 DARPNKFT---------------YPTLFKACSVAQAVQEGRQIHGHV---VKHGIGSDVH 168

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
            K      ++ I  YA  G +  AR++F    E D   WNTMI GY+    +E A  LF 
Sbjct: 169 IK------SAGIHMYASFGRLEDARKMFYSG-ESDVVCWNTMIDGYLKCGVLEAAKGLFA 221

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           +MP  +  +WN M++G A+ GNL  A   F  M +++ +SW+SM+ G  +   Y+ A+++
Sbjct: 222 QMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEI 281

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYAR 376
           F QMQ E  +P R   SS+L+  S I  +  G  +H  + +  I  D  +  AL+ MYA+
Sbjct: 282 FQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAK 341

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG +     +FEEMK  + + +WNAMIGG A HG A +ALELF  ++  ++ P  IT + 
Sbjct: 342 CGRLDMGWEVFEEMKE-REIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVG 400

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           VL+ACAHAG V++G + F++M   YG++P +EH+  +VD++GR G   +A DLI  MP +
Sbjct: 401 VLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMK 460

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
           P+ AVWGALLGACR+H N +LA+   + L+++EP+NS  YVLL N+YA VGR+DD +++R
Sbjct: 461 PNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIR 520

Query: 557 LLMKSNNIKKPTGYSWVDFS 576
            LMK   IK   G S VD +
Sbjct: 521 KLMKDRGIKTVPGVSIVDLN 540



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 162/373 (43%), Gaps = 53/373 (14%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G LE+AR +F    E D V WNT+I GY K G +E A  LF  MP +N+ SWN MI+G  
Sbjct: 181 GRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA 239

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
           + G++ +A + FD M  RD  S S++V G I  G   EA  +  +               
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQM-------------- 285

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNC------DRGEG-NVRFKRNIVSWN-----SMIM 210
                   QR      R +   +   C      D+G   +   KRN +  +     +++ 
Sbjct: 286 --------QREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLD 337

Query: 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT 266
            YAK G +    E+FE+M ER+ F+WN MI G       E+A  LF K+      P+ +T
Sbjct: 338 MYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGIT 397

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ----MQ 322
              +++  A  G ++  L  F+ M +   V       GC    D  G   LF +    + 
Sbjct: 398 LVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMV--DLLGRSGLFSEAEDLIN 455

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA----LITMYARCG 378
               KP+   + ++L    G   +H    + + V K ++   P N+     L  +YA+ G
Sbjct: 456 SMPMKPNAAVWGALL----GACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVG 511

Query: 379 AIVEARIIFEEMK 391
              +   I + MK
Sbjct: 512 RFDDVSKIRKLMK 524



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 148/326 (45%), Gaps = 61/326 (18%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           I  Y     +  ARK+F    + DVV WN MI GY+     G LE A+ LF  MP ++  
Sbjct: 174 IHMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLK---CGVLEAAKGLFAQMPVKNIG 229

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM---- 117
           +WN +I+G AK G + +A +LF+ M  R+ +SW++M+ G++  G    A+E F +M    
Sbjct: 230 SWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREE 289

Query: 118 --PGRDSASLSALVSGLIQNGELDEAARV----------------------LVKCGSRCD 153
             PGR    LS++++     G +D+   V                        KCG R D
Sbjct: 290 TRPGR--FILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCG-RLD 346

Query: 154 GG--------EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
            G        E  +  +N +I G    GR E+A +LF K+       EG  R K N ++ 
Sbjct: 347 MGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQ------EG--RMKPNGITL 398

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM-------EEASNLFVK 258
             ++   A AG V     IF+ M  R+ +  +  +  Y  ++D+        EA +L   
Sbjct: 399 VGVLTACAHAGFVDKGLRIFQTM--REFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINS 456

Query: 259 MP-HPDTLTWNAMVSGYAQIGNLELA 283
           MP  P+   W A++      GN +LA
Sbjct: 457 MPMKPNAAVWGALLGACRIHGNFDLA 482



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 132/320 (41%), Gaps = 68/320 (21%)

Query: 263 DTLTWNAMVSGYA--QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
           D     A++  YA     N + AL  F  +P  N+  WN +I GC  N     AI  + +
Sbjct: 64  DHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGR 123

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYA---- 375
           M ++  +P++ T+ ++    S    +  G QIH  V K  I  DV I +A I MYA    
Sbjct: 124 MVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGR 182

Query: 376 --------------------------RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA-- 407
                                     +CG +  A+ +F +M  +KN+ SWN MI G A  
Sbjct: 183 LEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMP-VKNIGSWNVMINGLAKG 241

Query: 408 -----------------------------SHGFATEALELFKSMRSFKVLPTYITFISVL 438
                                        S G   EALE+F+ M+  +  P      SVL
Sbjct: 242 GNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVL 301

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           +AC++ G +++GR    + +    I+       +L+D+  + GRL+   ++ + M  E +
Sbjct: 302 AACSNIGAIDQGRW-VHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMK-ERE 359

Query: 499 KAVWGALLGACRVHNNVELA 518
              W A++G   +H   E A
Sbjct: 360 IFTWNAMIGGLAIHGRAEDA 379



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 113/273 (41%), Gaps = 58/273 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           MI+G  K   +  ARKLFDEM +RD +SW+ M+ GYIS   +G  +EA  +F  M     
Sbjct: 234 MINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYIS---AGRYKEALEIFQQMQREET 290

Query: 56  -PER---------------------------------DCVTWNTVISGYAKTGEMEEALR 81
            P R                                 D V    ++  YAK G ++    
Sbjct: 291 RPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWE 350

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP-GR---DSASLSALVSGLIQNGE 137
           +F  M  R + +WNAMI G   +G   +A+E F ++  GR   +  +L  +++     G 
Sbjct: 351 VFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGF 410

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           +D+  R+  +      G +  +  Y  ++   G+ G   EA  L + +P+          
Sbjct: 411 VDKGLRIF-QTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPM---------- 459

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
            K N   W +++      G+   A  + + +LE
Sbjct: 460 -KPNAAVWGALLGACRIHGNFDLAERVGKILLE 491


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 207/629 (32%), Positives = 330/629 (52%), Gaps = 84/629 (13%)

Query: 5    YVKRREMAKARKLFDE-MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE------ 57
            YV    + + R++FD  +    V  WN+M+S Y      G   E+ YLF  M +      
Sbjct: 496  YVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKI---GDYRESIYLFKKMQKLGITGN 552

Query: 58   -----------------------RDCV------TWNTV----ISGYAKTGEMEEALRLFN 84
                                     CV      ++NTV    I+ Y K+GE++ A +LF+
Sbjct: 553  SYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFD 612

Query: 85   SMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDE 140
             +  R+VVSWN+MISG + NG   +A+EFF +M     G D A+L   V+     G L  
Sbjct: 613  ELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLS- 671

Query: 141  AARVLVKCGSR-CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
              R L   G + C   E  V   NTL+  Y + G + +A + F+K+             +
Sbjct: 672  LGRALHGQGVKACFSRE--VMFNNTLLDMYSKCGNLNDAIQAFEKMG------------Q 717

Query: 200  RNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYI---------HV 246
            + +VSW S+I  Y + G    A  +F +M  +    D +S  +++              V
Sbjct: 718  KTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDV 777

Query: 247  LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
             +    +N+ + +P       NA++  YA+ G++E A   F ++P K++VSWN+MI G  
Sbjct: 778  HNYIRKNNMALCLP-----VSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYS 832

Query: 307  TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVP 365
             N     A+KLF +MQ E  +PD  T + +L     +  L +G  IH  + +     ++ 
Sbjct: 833  KNSLPNEALKLFAEMQKE-SRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELH 891

Query: 366  INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
            + NALI MY +CG++V AR++F+ M   K++++W  MI GC  HG   EA+  F+ MR  
Sbjct: 892  VANALIDMYVKCGSLVHARLLFD-MIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIA 950

Query: 426  KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
             + P  ITF S+L AC+H+GL+ EG   F SM++E  +EP++EH+A +VD++ R G L  
Sbjct: 951  GIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSK 1010

Query: 486  AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
            A +LI+ MP +PD  +WGALL  CR+H++VELA+  AE + ++EP+N+  YVLL N+YA+
Sbjct: 1011 AYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAE 1070

Query: 546  VGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
              +W++  ++R  +    +KK  G SW++
Sbjct: 1071 AEKWEEVKKLRERIGKRGLKKSPGCSWIE 1099



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 6/206 (2%)

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV 364
           CE   D   A++L ++M  + E  D + +SSIL + +    L  G  +H +++   IP  
Sbjct: 429 CEVG-DLRNAVEL-LRMSQKSE-LDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIE 485

Query: 365 PINNA-LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
            +  A L+ MY  CGA+ E R IF+ +     V  WN M+   A  G   E++ LFK M+
Sbjct: 486 GVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQ 545

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
              +     TF  +L   A  G V E ++     V + G         SL+    + G +
Sbjct: 546 KLGITGNSYTFSCILKCFATLGRVGECKR-IHGCVYKLGFGSYNTVVNSLIATYFKSGEV 604

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGAC 509
           + A  L   +  + D   W +++  C
Sbjct: 605 DSAHKLFDELG-DRDVVSWNSMISGC 629


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 185/523 (35%), Positives = 295/523 (56%), Gaps = 35/523 (6%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSAS 124
           YAK     +A R+F+ MP R+ V+WNA+++G+ +NG    A+E   RM        DS +
Sbjct: 104 YAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSIT 163

Query: 125 LSALV---SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           L +++   +         EA    ++ G      E+LV     ++  Y + G +  AR +
Sbjct: 164 LVSVLPACANARALAACREAHAFAIRSGL-----EELVNVATAILDAYCKCGDIRAARVV 218

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI- 240
           FD +P             +N VSWN+MI  YA+ GD   A  +F +M+E      +  + 
Sbjct: 219 FDWMPT------------KNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVL 266

Query: 241 -----SGYIHVLDME-EASNLFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQK 293
                 G +  LD       L V++     ++  NA+++ Y++   ++LA   F  + ++
Sbjct: 267 AALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRR 326

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
             VSWN+MI GC  N   E A++LF +MQ+E  KPD  T  S++   + I D      IH
Sbjct: 327 TQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIH 386

Query: 354 QMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
               +  +  DV +  ALI MYA+CG +  ARI+F   +  ++V++WNAMI G  SHGF 
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARE-RHVITWNAMIHGYGSHGFG 445

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
             A+ELF+ M+S  ++P   TF+SVLSAC+HAGLV+EGR++F SM  +YG+EP +EH+ +
Sbjct: 446 KAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGT 505

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           +VD++GR G+L++A   I+ MP +P  +V+GA+LGAC++H NVELA+ +A+ + ++ P+ 
Sbjct: 506 MVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQE 565

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
              +VLL N+YA+   W D   VR  M+ N ++K  G+S +  
Sbjct: 566 GVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQL 608



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 206/460 (44%), Gaps = 73/460 (15%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------RGSGFLEEARY 50
           Y K R  A AR++FD MP RD V+WN +++GY  +                 G   ++  
Sbjct: 104 YAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSIT 163

Query: 51  LFDIMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSMP 87
           L  ++P                       E        ++  Y K G++  A  +F+ MP
Sbjct: 164 LVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMP 223

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRDSASLSALVSGLIQNGE---LDEAA 142
            +N VSWNAMI G+ QNGD   A+  F+RM   G D   +S L + L   GE   LDE  
Sbjct: 224 TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVL-AALQACGELGCLDEGM 282

Query: 143 RV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           RV   LV+ G   +     V   N LI  Y +  RV+ A  +FD++             +
Sbjct: 283 RVHELLVRIGLDSN-----VSVMNALITMYSKCKRVDLASHVFDELD------------R 325

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA--- 252
           R  VSWN+MI+  A+ G    A  +F +M    ++ D+F+  ++I     + D  +A   
Sbjct: 326 RTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWI 385

Query: 253 SNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
               +++    D     A++  YA+ G + +A   F    ++++++WN+MI G  ++   
Sbjct: 386 HGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFG 445

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINNA 369
           + A++LF +M+  G  P+  TF S+LS  S  G+VD              + P +     
Sbjct: 446 KAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGT 505

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           ++ +  R G + EA    ++M +   +  + AM+G C  H
Sbjct: 506 MVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLH 545



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 149/311 (47%), Gaps = 17/311 (5%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           + L   A+ + YA+      A   F RMP ++ V+WN+++AG   N     A+++ ++MQ
Sbjct: 93  EALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQ 152

Query: 323 -VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAI 380
             EGE+PD  T  S+L   +    L    + H    ++ + + V +  A++  Y +CG I
Sbjct: 153 EEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDI 212

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
             AR++F+ M   KN VSWNAMI G A +G + EAL LF  M    V  T ++ ++ L A
Sbjct: 213 RAARVVFDWMP-TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQA 271

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C   G ++EG +  + +V   G++  +    +L+ +  +  R++ A  +   +     + 
Sbjct: 272 CGELGCLDEGMRVHELLV-RIGLDSNVSVMNALITMYSKCKRVDLASHVFDELD-RRTQV 329

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTP----YVLLYNMYADV-----GRWDD 551
            W A++  C  +     ++ A     +++ EN  P     V +    AD+      RW  
Sbjct: 330 SWNAMILGCAQNG---CSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIH 386

Query: 552 ANEVRLLMKSN 562
              +RL +  +
Sbjct: 387 GYSIRLHLDQD 397



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 157/364 (43%), Gaps = 64/364 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS------------------ 42
           ++  Y K  ++  AR +FD MP ++ VSWN MI GY  +  S                  
Sbjct: 202 ILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVT 261

Query: 43  --------------GFLEEARYLFDIMP----ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                         G L+E   + +++     + +    N +I+ Y+K   ++ A  +F+
Sbjct: 262 DVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFD 321

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDE 140
            +  R  VSWNAMI G  QNG   +A+  F RM       DS +L +++  L    +  +
Sbjct: 322 ELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQ 381

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
            AR +     R    +D V     LI  Y + GRV  AR LF            N   +R
Sbjct: 382 -ARWIHGYSIRLHLDQD-VYVLTALIDMYAKCGRVNIARILF------------NSARER 427

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLF 256
           ++++WN+MI  Y   G   +A E+FE+M    +  +  ++ +++S   H   ++E    F
Sbjct: 428 HVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYF 487

Query: 257 VKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKD 310
             M       P    +  MV    + G L+ A  F ++MP    L  + +M+  C+ +K+
Sbjct: 488 TSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKN 547

Query: 311 YEGA 314
            E A
Sbjct: 548 VELA 551



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 3/131 (2%)

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINN 368
           D   A+  F+ M   G  P   TF+S+L + +   DL  G  +H Q+  + +  +     
Sbjct: 39  DLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAAT 98

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK-V 427
           AL  MYA+C    +AR +F+ M  +++ V+WNA++ G A +G A  A+E+   M+  +  
Sbjct: 99  ALANMYAKCRRPADARRVFDRMP-VRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGE 157

Query: 428 LPTYITFISVL 438
            P  IT +SVL
Sbjct: 158 RPDSITLVSVL 168



 Score = 45.8 bits (107), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 16/164 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K   +  AR LF+   +R V++WN MI GY S    GF + A  LF+ M     
Sbjct: 404 LIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGS---HGFGKAAVELFEEMKSIGI 460

Query: 61  V----TWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
           V    T+ +V+S  +  G ++E    F SM         +  +  M+    + G +  A 
Sbjct: 461 VPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAW 520

Query: 112 EFFDRMPGRDSASLSALVSG---LIQNGEL-DEAARVLVKCGSR 151
            F  +MP     S+   + G   L +N EL +E+A+ + + G +
Sbjct: 521 AFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQ 564


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 216/655 (32%), Positives = 321/655 (49%), Gaps = 128/655 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSG---- 43
           +I  Y     +  AR++FD M +RD V WNVM+ GY+ +             R SG    
Sbjct: 188 LIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPN 247

Query: 44  FLEEARYLFDIMPERDCVT-------------------WNTVISGYAKTGEMEEALRLFN 84
           F   A +L     E D ++                    NT++S YAK   +EEA RLF 
Sbjct: 248 FATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFG 307

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQ-NGELD 139
            MP  ++V+WN MISG +QNG V +A+  F  M       DS +L++L+  L + NG   
Sbjct: 308 LMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNG--- 364

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
                                               ++ +++   I  NC          
Sbjct: 365 -----------------------------------FKQGKEIHGYIVRNCAH-------- 381

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF--- 256
            ++   ++++  Y K  DV  A+ +F+     D    +TMISGY+     E A  +F   
Sbjct: 382 VDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYL 441

Query: 257 -----------VKMPHPDTLTWNAMVSG-------------------------YAQIGNL 280
                      V    P   +  AM  G                         Y++ G L
Sbjct: 442 LALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRL 501

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           +L+   F +M  K+ V+WNSMI+    N + E A+ LF QM +EG K +  T SSILS  
Sbjct: 502 DLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSAC 561

Query: 341 SGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           +G+  ++ G +IH ++ K  I  D+   +ALI MY +CG +  A  +FE M   KN VSW
Sbjct: 562 AGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMP-EKNEVSW 620

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N++I    +HG   E+++L   M+       ++TF++++SACAHAG V+EG + F+ M  
Sbjct: 621 NSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTE 680

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
           EY IEP++EH + +VD+  R G+L+ AM  I  MPF+PD  +WGALL ACRVH NVELA+
Sbjct: 681 EYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELAE 740

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +A++ L K++P N   YVL+ N+ A  GRWD  +++R LMK   ++K  GYSWVD
Sbjct: 741 IASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQKIPGYSWVD 795



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 126/473 (26%), Positives = 231/473 (48%), Gaps = 30/473 (6%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD- 115
           +RD    + +I  YA  G ++ A  +F+ M  R+ V WN M+ G+++ GDVA+A+  F  
Sbjct: 179 DRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRV 238

Query: 116 -RMPGRDS--ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
            R  G D   A+L+  +S  +   E D  + V +   +   G E  V   NTL+  Y + 
Sbjct: 239 MRASGCDPNFATLACFLS--VCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKC 296

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM---- 228
             +EEA +LF  +P            + ++V+WN MI    + G V  A  +F  M    
Sbjct: 297 QCLEEAWRLFGLMP------------RDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSG 344

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLELAL 284
           L+ D+ +  +++     +   ++   +   +     H D    +A+V  Y +  ++ +A 
Sbjct: 345 LQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQ 404

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
           + F      ++V  ++MI+G   N+  E A+K+F  +   G KP+    +S L   + + 
Sbjct: 405 NVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMA 464

Query: 345 DLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
            + +G ++H  V K        + +AL+ MY++CG +  +  +F +M   K+ V+WN+MI
Sbjct: 465 AMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMS-AKDEVTWNSMI 523

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
              A +G   EAL+LF+ M    V    +T  S+LSACA    +  G++    ++ +  I
Sbjct: 524 SSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKE-IHGIIIKGPI 582

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE 516
              +   ++L+D+ G+ G LE A+ + + MP E ++  W +++ A   H  V+
Sbjct: 583 RADLFAESALIDMYGKCGNLELALRVFEHMP-EKNEVSWNSIISAYGAHGLVK 634



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 214/462 (46%), Gaps = 37/462 (8%)

Query: 66  VISGYAKTGEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRM----- 117
           ++  Y       +A+ +F+S+P   A   + WN +I GF   G    A+ F+ +M     
Sbjct: 82  LVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPS 141

Query: 118 -PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            P  D  +L  +V      G L      LV   +R  G +  +   + LI  Y   G ++
Sbjct: 142 SPRPDGHTLPYVVKSCAALGALHLGR--LVHRTTRALGLDRDMYVGSALIKMYADAGLLD 199

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            AR++FD +             +R+ V WN M+  Y KAGDV SA  +F  M        
Sbjct: 200 GAREVFDGMD------------ERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPN 247

Query: 237 NTMISGYIHVLDME-------EASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFK 288
              ++ ++ V   E       +   L VK    P+    N +VS YA+   LE A   F 
Sbjct: 248 FATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFG 307

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            MP+ +LV+WN MI+GC  N   + A++LF  MQ  G +PD  T +S+L   + +     
Sbjct: 308 LMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQ 367

Query: 349 GMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G +IH  + +     DV + +AL+ +Y +C  +  A+ +F+  K + +VV  + MI G  
Sbjct: 368 GKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSI-DVVIGSTMISGYV 426

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPR 466
            +  +  A+++F+ + +  + P  +   S L ACA    +  G++ H   + N Y  E R
Sbjct: 427 LNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAY--EGR 484

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
               ++L+D+  + GRL+ +  +   M  + D+  W +++ +
Sbjct: 485 CYVESALMDMYSKCGRLDLSHYMFSKMSAK-DEVTWNSMISS 525


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 208/627 (33%), Positives = 307/627 (48%), Gaps = 117/627 (18%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAM 97
           G L++A+ +   MPERD VTWN+VI+  A  G + EAL     M +      NVVSW+A+
Sbjct: 209 GSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAV 268

Query: 98  ISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG--SRCDGG 155
           I GF QNG    AIE   RM           V GL+ N +    A VL  C    R D G
Sbjct: 269 IGGFAQNGYDEEAIEMLFRMQ----------VEGLVPNAQ--TLAGVLPACARLQRLDLG 316

Query: 156 EDL-------------------------------------------VRAYNTLIVGYGQR 172
           + L                                           V + NT+IVGY + 
Sbjct: 317 KQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCES 376

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK------------------ 214
           G V +A++LFD + V        +  +R ++SWNS+I  Y +                  
Sbjct: 377 GDVSKAKELFDCMDV--------LGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEE 428

Query: 215 ---------------AGDVVSAR---EIFEQM----LERDTFSWNTMISGYIHVLDMEEA 252
                            D +S R   EI  Q     L+ DTF    ++  Y    D+  A
Sbjct: 429 GIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAA 488

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP----QKNLVSWNSMIAGCETN 308
              F ++   D  TWNA++SGY +   +E      ++M       N+ +WNS++AG   N
Sbjct: 489 QVAFDEVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVEN 548

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPIN 367
           +  +  ++LF +MQ+   +PD +T   IL   S +  L  G Q H    K     DV I 
Sbjct: 549 RQLDLTMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIG 608

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
            AL+ MYA+CG++  A++ ++ +    N+VS NAM+  CA HG   E + LF++M +   
Sbjct: 609 AALVDMYAKCGSLKYAQLAYDRISN-PNLVSHNAMLTACAMHGHGEEGISLFQTMLALGF 667

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
           +P ++TF+SVLS+C H G VE G + F  ++  Y ++P ++H+ S+VD++ R G+L +A 
Sbjct: 668 IPDHVTFLSVLSSCVHVGSVETGCEFF-DLMGYYNVKPTLKHYTSMVDLLSRSGQLHEAY 726

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
           +LIK MP E D  +WGALLG C  H N+EL ++AAE L+++EP NS  YVLL N++A   
Sbjct: 727 ELIKKMPVECDSVLWGALLGGCVTHGNIELGEIAAERLIELEPNNSGNYVLLANLHAYAR 786

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVD 574
           RW D   VR +MK   + K  G SW++
Sbjct: 787 RWTDLARVRGMMKDRGMHKSPGCSWIE 813



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 149/612 (24%), Positives = 266/612 (43%), Gaps = 100/612 (16%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP--------------- 87
           G L++A +LF+ MP R+  +W  ++S Y   G  EEA  LF  +                
Sbjct: 108 GLLKDADFLFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLVF 167

Query: 88  ------------------------ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
                                     N+   NA+I  + + G + +A +   +MP RDS 
Sbjct: 168 KACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPERDSV 227

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           + +++++    NG + EA   L K  S  D     V +++ +I G+ Q G  EEA ++  
Sbjct: 228 TWNSVITACAANGMVYEALEFLEKMKS-LDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLF 286

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS----WNTM 239
           ++ V     EG V    N  +   ++   A+   +   +++   +   D  S     N +
Sbjct: 287 RMQV-----EGLV---PNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNAL 338

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP----QKNL 295
           +  Y    DM  A+ +F+K    + L+ N M+ GY + G++  A + F  M     ++ L
Sbjct: 339 VDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGL 398

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQV-EGEKPDRHTFSSILSMSSGIVDLHLGMQIH- 353
           +SWNS+I+G   N  ++ A  +F  M + EG +PD  T  S+L+  +  + L  G +IH 
Sbjct: 399 ISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHA 458

Query: 354 QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK---------------------- 391
           Q + K +  D  +  AL+ MY++C  +  A++ F+E+                       
Sbjct: 459 QAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDVPTWNALISGYTRSNQIER 518

Query: 392 ---LLK---------NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
              LL+         N+ +WN+++ G   +      ++LF  M+  K+ P   T   +L 
Sbjct: 519 IQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILP 578

Query: 440 ACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           AC+    +E G+Q H  S+   Y  +  I   A+LVD+  + G L+ A  L       P+
Sbjct: 579 ACSRLATLERGKQAHAHSIKCGYDTDVHIG--AALVDMYAKCGSLKYA-QLAYDRISNPN 635

Query: 499 KAVWGALLGACRVHNNVELAQVAAEALMKVE--PENSTPYVLLYNMYADVGRWDDANEVR 556
                A+L AC +H + E      + ++ +   P++ T ++ + +    VG  +   E  
Sbjct: 636 LVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVT-FLSVLSSCVHVGSVETGCEFF 694

Query: 557 LLMKSNNIKKPT 568
            LM   N+ KPT
Sbjct: 695 DLMGYYNV-KPT 705



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 205/469 (43%), Gaps = 86/469 (18%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           YA+ G +++A  LF +MP RN+ SW A++S +L +G    A   F  +   D   L   V
Sbjct: 104 YARCGLLKDADFLFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQ-FDGVELDFFV 162

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
             L+                  C G                  G VE  R+L   +    
Sbjct: 163 FPLVFKA---------------CSG-----------------LGSVELGRQLHGLVI--- 187

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
                  RF  NI   N++I  Y K G +  A+++  +M ERD+ +WN++I+       +
Sbjct: 188 -----KFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMV 242

Query: 250 EEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
            EA     KM       P+ ++W+A++ G+AQ G  E A                     
Sbjct: 243 YEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEA--------------------- 281

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPD 363
                     I++  +MQVEG  P+  T + +L   + +  L LG Q+H  +T+   I +
Sbjct: 282 ----------IEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISN 331

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
             + NAL+ +Y RCG +  A  IF +   +KNV+S N MI G    G  ++A ELF  M 
Sbjct: 332 PVVVNALVDVYRRCGDMGGAAKIFLKFS-VKNVLSCNTMIVGYCESGDVSKAKELFDCMD 390

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV-----DIVG 478
              +    I++ S++S      + +E    F++M+ E GIEP      S++      I  
Sbjct: 391 VLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISL 450

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
           R G+   A  ++KG+  + D  V GAL+       ++  AQVA + +M+
Sbjct: 451 RQGKEIHAQAIVKGL--QSDTFVGGALVEMYSKCQDLTAAQVAFDEVME 497



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 117/217 (53%), Gaps = 4/217 (1%)

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           ++  YA+ G L+ A   F+ MP +NL SW ++++    +  +E A  LF  +Q +G + D
Sbjct: 100 LLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELD 159

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFE 388
              F  +    SG+  + LG Q+H +V K     ++ ++NALI MY +CG++ +A+ +  
Sbjct: 160 FFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLV 219

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV-LPTYITFISVLSACAHAGLV 447
           +M   ++ V+WN++I  CA++G   EALE  + M+S    +P  +++ +V+   A  G  
Sbjct: 220 KMP-ERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYD 278

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
           EE  +    M  E G+ P  +  A ++    R  RL+
Sbjct: 279 EEAIEMLFRMQVE-GLVPNAQTLAGVLPACARLQRLD 314



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 94/190 (49%), Gaps = 10/190 (5%)

Query: 348 LGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           LG Q+H    KT    D  I+  L+ MYARCG + +A  +FE M  ++N+ SW A++   
Sbjct: 77  LGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETMP-MRNLHSWKAILSVY 135

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
             HG   EA  LF+ ++   V   +  F  V  AC+  G VE GRQ    +V ++     
Sbjct: 136 LDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQ-LHGLVIKFRFCLN 194

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM 526
           I    +L+D+ G+ G L+DA  ++  MP E D   W +++ AC  +  V       EAL 
Sbjct: 195 IYVSNALIDMYGKCGSLDDAKKVLVKMP-ERDSVTWNSVITACAANGMV------YEALE 247

Query: 527 KVEPENSTPY 536
            +E   S  Y
Sbjct: 248 FLEKMKSLDY 257


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 154/381 (40%), Positives = 241/381 (63%), Gaps = 3/381 (0%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  ++    ++I  Y+  GDV  +R +F+ M ERD F+W TMIS ++   DM  A  LF 
Sbjct: 107 FDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFD 166

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           +MP  +  TWNAM+ GY ++GN E A   F +MP ++++SW +M+     NK Y+  I L
Sbjct: 167 EMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIAL 226

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYAR 376
           F  +  +G  PD  T ++++S  + +  L LG ++H  +V +    DV I ++LI MYA+
Sbjct: 227 FHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAK 286

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG+I  A ++F +++  KN+  WN +I G A+HG+  EAL +F  M   ++ P  +TFIS
Sbjct: 287 CGSIDMALLVFYKLQT-KNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFIS 345

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           +L+AC HAG +EEGR+ F SMV +Y I P++EH+  +VD++ + G LEDA+++I+ M  E
Sbjct: 346 ILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVE 405

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
           P+  +WGALL  C++H N+E+A +A + LM +EP NS  Y LL NMYA+  RW++  ++R
Sbjct: 406 PNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIR 465

Query: 557 LLMKSNNI-KKPTGYSWVDFS 576
             MK   + K+  G SWV+ +
Sbjct: 466 TTMKDLGVEKRCPGSSWVEIN 486



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 156/331 (47%), Gaps = 37/331 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y    ++  +R++FD+MP+RDV +W  MIS ++     G +  A  LFD MPE++ 
Sbjct: 117 LIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRD---GDMASAGRLFDEMPEKNV 173

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF----DR 116
            TWN +I GY K G  E A  LFN MPAR+++SW  M++ + +N      I  F    D+
Sbjct: 174 ATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDK 233

Query: 117 MPGRDSASLSALVSGLIQNGEL---DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
               D  +++ ++S     G L    E    LV  G   D     V   ++LI  Y + G
Sbjct: 234 GMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLD-----VYIGSSLIDMYAKCG 288

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----L 229
            ++ A  +F K+              +N+  WN +I   A  G V  A  +F +M    +
Sbjct: 289 SIDMALLVFYKLQT------------KNLFCWNCIIDGLATHGYVEEALRMFGEMERKRI 336

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELAL 284
             +  ++ ++++   H   +EE    F+ M       P    +  MV   ++ G LE AL
Sbjct: 337 RPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDAL 396

Query: 285 DFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
           +  + M  + N   W +++ GC+ +K+ E A
Sbjct: 397 EMIRNMTVEPNSFIWGALLNGCKLHKNLEIA 427



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 169/356 (47%), Gaps = 59/356 (16%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
            T+I  Y+  G++  + R+F+ MP R+V +W  MIS  +++GD+A+A   FD MP ++ A
Sbjct: 115 TTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVA 174

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           +                                     +N +I GYG+ G  E A  LF+
Sbjct: 175 T-------------------------------------WNAMIDGYGKLGNAESAEFLFN 197

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTM 239
           ++P             R+I+SW +M+ CY++         +F  ++++    D  +  T+
Sbjct: 198 QMPA------------RDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTV 245

Query: 240 ISGYIHV--LDMEEASNLFVKMPHPDTLTW--NAMVSGYAQIGNLELALDFFKRMPQKNL 295
           IS   H+  L + +  +L++ +   D   +  ++++  YA+ G++++AL  F ++  KNL
Sbjct: 246 ISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNL 305

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ-IHQ 354
             WN +I G  T+   E A+++F +M+ +  +P+  TF SIL+  +    +  G +    
Sbjct: 306 FCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMS 365

Query: 355 MVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           MV    I P V     ++ + ++ G + +A  +   M +  N   W A++ GC  H
Sbjct: 366 MVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLH 421



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 129/320 (40%), Gaps = 68/320 (21%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D    N  +S  + +  + LA   F  +   N++ +N++I GC      E A+  ++ M 
Sbjct: 9   DCFLVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHML 68

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-------------------------- 356
                P  ++FSS++   + +VD   G  +H  V                          
Sbjct: 69  RNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVG 128

Query: 357 -TKTVIPDVPINN-----ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            ++ V  D+P  +      +I+ + R G +  A  +F+EM   KNV +WNAMI G    G
Sbjct: 129 GSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMP-EKNVATWNAMIDGYGKLG 187

Query: 411 FATEALELFKSM------------------RSFK-------------VLPTYITFISVLS 439
            A  A  LF  M                  + +K             ++P  +T  +V+S
Sbjct: 188 NAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVIS 247

Query: 440 ACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           ACAH G +  G++ H   ++  + ++  I   +SL+D+  + G ++ A+ +   +    +
Sbjct: 248 ACAHLGALALGKEVHLYLVLQGFDLDVYIG--SSLIDMYAKCGSIDMALLVFYKLQ-TKN 304

Query: 499 KAVWGALLGACRVHNNVELA 518
              W  ++     H  VE A
Sbjct: 305 LFCWNCIIDGLATHGYVEEA 324


>gi|326530660|dbj|BAK01128.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 613

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 184/509 (36%), Positives = 277/509 (54%), Gaps = 65/509 (12%)

Query: 72  KTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSG 131
           ++G +   LRL NS+ AR           +L +G  A+A   F  +P  D+ +       
Sbjct: 128 RSGHLPADLRLANSLLAR-----------YLAHGSHASARRLFADVPRPDAVT------- 169

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
                                         +NTL+    + G +  AR LFD++PV    
Sbjct: 170 ------------------------------WNTLLRACLRSGLLPSARHLFDQMPV---- 195

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEE 251
                   R++VS+NSM+  +A AGD+  AR++F+ M ERD  SWN+M++G+    DMEE
Sbjct: 196 --------RDLVSYNSMLSGHAAAGDMDGARQLFDGMPERDVVSWNSMLAGHTRCGDMEE 247

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           A  +F  MP  D ++WN+M+ GYAQ G++  A   F  MP+++ VSWN ++A     K++
Sbjct: 248 ARRMFDAMPERDVVSWNSMLDGYAQAGDVLAARAVFDGMPRRSTVSWNVVLALYARVKNW 307

Query: 312 EGAIKLFIQMQVEGEK-PDRHTFSSILSMSSGIVDLHLGMQIHQMVTK---TVIPDVPIN 367
              ++LF  M   G   P+  TF S+L+    + DL  G ++H +V +   T++PDV + 
Sbjct: 308 RECLRLFDAMMAVGAAVPNEKTFVSVLTACGSLGDLERGKRVHDLVRQRWETLVPDVLLL 367

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
            AL+TMYA+CG +  AR+IF+ M   ++V SWN+MI G   HG + +ALELF  M     
Sbjct: 368 TALLTMYAKCGVMEAARVIFDSMGE-RSVPSWNSMIIGYGLHGQSEKALELFLEMERTGP 426

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
            P   TF+ VLS+CAH GLV EG   F  MV  YG+EP+ EHF  ++D++GR G L D+ 
Sbjct: 427 RPNETTFVCVLSSCAHGGLVLEGWWCFDRMVRLYGVEPKAEHFGCMMDLLGRAGLLTDSD 486

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
            L++ +  +   A+WGA++ A R  N   L +   + L+++ P+   PYVLL N+YA  G
Sbjct: 487 TLVQNLQEKASPALWGAMVSASRAQNGSRLGEFVGKKLIEMRPKEVGPYVLLSNIYAGEG 546

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           RW+D  +VR +MK N  +K  G S V  S
Sbjct: 547 RWNDVEKVREMMKGNGAEKDVGLSLVGSS 575



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 189/385 (49%), Gaps = 64/385 (16%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N++++ Y   G    A RLF  +P  + V+WN ++   L++G + +A   FD+MP RD  
Sbjct: 140 NSLLARYLAHGSHASARRLFADVPRPDAVTWNTLLRACLRSGLLPSARHLFDQMPVRDLV 199

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDG-GEDLVRAYNTLIVGYGQRGRVEEARKLF 182
           S ++++SG    G++D A ++        DG  E  V ++N+++ G+ + G +EEAR++F
Sbjct: 200 SYNSMLSGHAAAGDMDGARQLF-------DGMPERDVVSWNSMLAGHTRCGDMEEARRMF 252

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
           D +P            +R++VSWNSM+  YA+AGDV++AR +F+ M  R T SWN +++ 
Sbjct: 253 DAMP------------ERDVVSWNSMLDGYAQAGDVLAARAVFDGMPRRSTVSWNVVLAL 300

Query: 243 YIHVLDMEEASNLFVKM-------PH---------------------------------- 261
           Y  V +  E   LF  M       P+                                  
Sbjct: 301 YARVKNWRECLRLFDAMMAVGAAVPNEKTFVSVLTACGSLGDLERGKRVHDLVRQRWETL 360

Query: 262 -PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
            PD L   A+++ YA+ G +E A   F  M ++++ SWNSMI G   +   E A++LF++
Sbjct: 361 VPDVLLLTALLTMYAKCGVMEAARVIFDSMGERSVPSWNSMIIGYGLHGQSEKALELFLE 420

Query: 321 MQVEGEKPDRHTFSSIL-SMSSGIVDLHLGMQIHQMVT-KTVIPDVPINNALITMYARCG 378
           M+  G +P+  TF  +L S + G + L       +MV    V P       ++ +  R G
Sbjct: 421 MERTGPRPNETTFVCVLSSCAHGGLVLEGWWCFDRMVRLYGVEPKAEHFGCMMDLLGRAG 480

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMI 403
            + ++  + + ++   +   W AM+
Sbjct: 481 LLTDSDTLVQNLQEKASPALWGAMV 505



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 161/312 (51%), Gaps = 43/312 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y+     A AR+LF ++P+ D V+WN ++   + S   G L  AR+LFD MP RD 
Sbjct: 142 LLARYLAHGSHASARRLFADVPRPDAVTWNTLLRACLRS---GLLPSARHLFDQMPVRDL 198

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V++N+++SG+A  G+M+ A +LF+ MP R+VVSWN+M++G  + GD+  A   FD MP R
Sbjct: 199 VSYNSMLSGHAAAGDMDGARQLFDGMPERDVVSWNSMLAGHTRCGDMEEARRMFDAMPER 258

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  S ++++ G  Q G++  A  V      R         ++N ++  Y +     E  +
Sbjct: 259 DVVSWNSMLDGYAQAGDVLAARAVFDGMPRRS------TVSWNVVLALYARVKNWRECLR 312

Query: 181 LFD------------KIPVNCDRGEGNV----RFKR--------------NIVSWNSMIM 210
           LFD            K  V+     G++    R KR              +++   +++ 
Sbjct: 313 LFDAMMAVGAAVPNEKTFVSVLTACGSLGDLERGKRVHDLVRQRWETLVPDVLLLTALLT 372

Query: 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLT 266
            YAK G + +AR IF+ M ER   SWN+MI GY      E+A  LF++M    P P+  T
Sbjct: 373 MYAKCGVMEAARVIFDSMGERSVPSWNSMIIGYGLHGQSEKALELFLEMERTGPRPNETT 432

Query: 267 WNAMVSGYAQIG 278
           +  ++S  A  G
Sbjct: 433 FVCVLSSCAHGG 444


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 196/625 (31%), Positives = 338/625 (54%), Gaps = 67/625 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----------------SSRGSGF 44
           +I+ YV   +++ +R  FD + ++++ SWN +IS Y+                S  G G 
Sbjct: 60  LINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGH 119

Query: 45  LEEARY---------------------LFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
           L    Y                     +F +  E D     +++  Y++ G ++ A ++F
Sbjct: 120 LRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVF 179

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD 139
             MP ++V SWNAMISGF QNG+ A A+   +RM G     D+ ++++++    Q+ ++ 
Sbjct: 180 VDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVI 239

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
               VL+       G +  V   N LI  Y + GR+++A+ +FD++ V            
Sbjct: 240 NG--VLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEV------------ 285

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNL 255
           R++VSWNS+I  Y +  D  +A   F+ M    +  D  +  ++ S +  + D   + ++
Sbjct: 286 RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSI 345

Query: 256 --FV---KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
             FV   +    D +  NA+V+ YA++G +  A   F ++P+K+ +SWN+++ G   N  
Sbjct: 346 LGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGL 405

Query: 311 YEGAIKLFIQMQ-VEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINN 368
              AI  +  M+      P++ T+ SI+   S +  L  GM+IH +++  ++  DV +  
Sbjct: 406 ASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVAT 465

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
            LI +Y +CG + +A  +F E+      V WNA+I     HG   EAL+LFK M + +V 
Sbjct: 466 CLIDLYGKCGRLEDAMSLFYEIPR-DTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVK 524

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
             +ITF+S+LSAC+H+GLV+EG++ F  M  EYGI+P ++H+  +VD++GR G LE A +
Sbjct: 525 ADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYE 584

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           L++ MP +PD ++WGALL AC+++ N EL  +A++ L++V+ EN   YVLL N+YA+  +
Sbjct: 585 LVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEK 644

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWV 573
           W+   +VR L +   ++K  G+S V
Sbjct: 645 WEGVIKVRSLARDRGLRKTPGWSSV 669



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 162/348 (46%), Gaps = 43/348 (12%)

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL---- 255
           +NIV    +I  Y   GD+  +R  F+ + +++ FSWN++IS Y+      EA N     
Sbjct: 52  QNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQL 111

Query: 256 ------------FVKMP------------------------HPDTLTWNAMVSGYAQIGN 279
                       F   P                          D     ++V  Y++ G 
Sbjct: 112 FSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGV 171

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           L++A   F  MP K++ SWN+MI+G   N +  GA+ +  +M+ EG K D  T +SIL +
Sbjct: 172 LDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPV 231

Query: 340 SSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            +   D+  G+ IH  V K  +  DV ++NALI MY++ G + +A+++F++M+ ++++VS
Sbjct: 232 CAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQME-VRDLVS 290

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN++I     +   + AL  FK M+   + P  +T +S+ S  +        R     ++
Sbjct: 291 WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVI 350

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
               ++  +    +LV++  + G +  A  +   +P   D   W  L+
Sbjct: 351 RREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP-RKDTISWNTLV 397


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 196/625 (31%), Positives = 338/625 (54%), Gaps = 67/625 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----------------SSRGSGF 44
           +I+ YV   +++ +R  FD + ++++ SWN +IS Y+                S  G G 
Sbjct: 60  LINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGH 119

Query: 45  LEEARY---------------------LFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
           L    Y                     +F +  E D     +++  Y++ G ++ A ++F
Sbjct: 120 LRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVF 179

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD 139
             MP ++V SWNAMISGF QNG+ A A+   +RM G     D+ ++++++    Q+ ++ 
Sbjct: 180 VDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVI 239

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
               VL+       G +  V   N LI  Y + GR+++A+ +FD++ V            
Sbjct: 240 NG--VLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEV------------ 285

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNL 255
           R++VSWNS+I  Y +  D  +A   F+ M    +  D  +  ++ S +  + D   + ++
Sbjct: 286 RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSI 345

Query: 256 --FV---KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
             FV   +    D +  NA+V+ YA++G +  A   F ++P+K+ +SWN+++ G   N  
Sbjct: 346 LGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGL 405

Query: 311 YEGAIKLFIQMQ-VEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINN 368
              AI  +  M+      P++ T+ SI+   S +  L  GM+IH +++  ++  DV +  
Sbjct: 406 ASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVAT 465

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
            LI +Y +CG + +A  +F E+      V WNA+I     HG   EAL+LFK M + +V 
Sbjct: 466 CLIDLYGKCGRLEDAMSLFYEIPR-DTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVK 524

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
             +ITF+S+LSAC+H+GLV+EG++ F  M  EYGI+P ++H+  +VD++GR G LE A +
Sbjct: 525 ADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYE 584

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           L++ MP +PD ++WGALL AC+++ N EL  +A++ L++V+ EN   YVLL N+YA+  +
Sbjct: 585 LVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEK 644

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWV 573
           W+   +VR L +   ++K  G+S V
Sbjct: 645 WEGVIKVRSLARDRGLRKTPGWSSV 669



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 162/348 (46%), Gaps = 43/348 (12%)

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL---- 255
           +NIV    +I  Y   GD+  +R  F+ + +++ FSWN++IS Y+      EA N     
Sbjct: 52  QNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQL 111

Query: 256 ------------FVKMP------------------------HPDTLTWNAMVSGYAQIGN 279
                       F   P                          D     ++V  Y++ G 
Sbjct: 112 FSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGV 171

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           L++A   F  MP K++ SWN+MI+G   N +  GA+ +  +M+ EG K D  T +SIL +
Sbjct: 172 LDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPV 231

Query: 340 SSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            +   D+  G+ IH  V K  +  DV ++NALI MY++ G + +A+++F++M+ ++++VS
Sbjct: 232 CAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQME-VRDLVS 290

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN++I     +   + AL  FK M+   + P  +T +S+ S  +        R     ++
Sbjct: 291 WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVI 350

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
               ++  +    +LV++  + G +  A  +   +P   D   W  L+
Sbjct: 351 RREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP-RKDTISWNTLV 397


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 221/700 (31%), Positives = 332/700 (47%), Gaps = 144/700 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           +I+ Y K R    ARKL DE  + D+VSW+ +ISGY  +                     
Sbjct: 97  LINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCN 156

Query: 40  --RGSGFLEEARYLFDIMP-------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
               S  L+    + D+               E D    NT++  YAK  E  ++ RLF+
Sbjct: 157 EFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFD 216

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALV---SGLIQNGE 137
            +P RNVVSWNA+ S ++Q      A+  F  M       +  SLS++V   +GL  +  
Sbjct: 217 EIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSR 276

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
                  L+K G   D       + N L+  Y + G + +A  +F+KI            
Sbjct: 277 GKIIHGYLIKLGYDWDP-----FSANALVDMYAKVGDLADAISVFEKIK----------- 320

Query: 198 FKRNIVSWNSMIM-C------------------------------------------YAK 214
            + +IVSWN++I  C                                          Y+K
Sbjct: 321 -QPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSK 379

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP-------------- 260
              +  AR  F  + E+D  +WN +ISGY    +  EA +LFV+M               
Sbjct: 380 CDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTI 439

Query: 261 -------------------------HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
                                    H D    N+++  Y +  ++E A   F+     +L
Sbjct: 440 LKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDL 499

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           VS+ SMI         E A+KLF++MQ    KPDR   SS+L+  + +     G Q+H  
Sbjct: 500 VSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVH 559

Query: 356 VTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           + K   + D+   N+L+ MYA+CG+I +A   F E+   + +VSW+AMIGG A HG   +
Sbjct: 560 ILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTE-RGIVSWSAMIGGLAQHGHGRQ 618

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           AL+LF  M    V P +IT +SVL AC HAGLV E + +F+SM   +G +P  EH+A ++
Sbjct: 619 ALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMI 678

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D++GR G++ +A++L+  MPFE + +VWGALLGA R+H +VEL + AAE L  +EPE S 
Sbjct: 679 DLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSG 738

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            +VLL N+YA  G+W++  EVR LM+ + +KK  G SW++
Sbjct: 739 THVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIE 778



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 137/538 (25%), Positives = 244/538 (45%), Gaps = 93/538 (17%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +I+ Y+K      A +L +     ++VSW+A+ISG+ QNG    A+  F  M      
Sbjct: 95  NHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVK 154

Query: 124 SLSALVSGLIQNGELDEAARV--LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
                 S +++   + +  R+   V       G E  V   NTL+V Y +     ++++L
Sbjct: 155 CNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRL 214

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWN 237
           FD+IP            +RN+VSWN++  CY +      A  +F +M    ++ + FS +
Sbjct: 215 FDEIP------------ERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLS 262

Query: 238 TMISGYIHVLDMEEAS---NLFVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           +M++    + D           +K+ +  D  + NA+V  YA++G+L  A+  F+++ Q 
Sbjct: 263 SMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQP 322

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           ++VSWN++IAGC  ++ +E A++L  QM+       R   SS++ M              
Sbjct: 323 DIVSWNAVIAGCVLHEHHEQALELLGQMK-------RQLHSSLMKMD------------- 362

Query: 354 QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
                 +  D+ ++  L+ MY++C  + +AR+ F  +   K++++WNA+I G + +    
Sbjct: 363 ------MESDLFVSVGLVDMYSKCDLLEDARMAFNLLP-EKDLIAWNAIISGYSQYWEDM 415

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-H--------------FKSMV 458
           EAL LF  M    +     T  ++L + A   +V   RQ H                S++
Sbjct: 416 EALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLI 475

Query: 459 NEYGIEPRIE---------------HFASLVDIVGRHGRLEDAMDL---IKGMPFEPDKA 500
           + YG    +E                F S++    ++G+ E+A+ L   ++ M  +PD+ 
Sbjct: 476 DSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRF 535

Query: 501 VWGALLGACRVHNNVELAQVAAEALMK------VEPENSTPYVLLYNMYADVGRWDDA 552
           V  +LL AC   +  E  +     ++K      +   NS     L NMYA  G  DDA
Sbjct: 536 VCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNS-----LVNMYAKCGSIDDA 588



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 5/188 (2%)

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARII 386
           P   ++S +LS       L  G+QIH  +TK+ + D P I N LI +Y++C     AR +
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
            +E     ++VSW+A+I G A +G    AL  F  M    V     TF SVL AC+    
Sbjct: 114 VDESS-EPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKD 172

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +  G+Q    +V   G E  +    +LV +  +     D+  L   +P E +   W AL 
Sbjct: 173 LRIGKQ-VHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIP-ERNVVSWNALF 230

Query: 507 GACRVHNN 514
            +C V  +
Sbjct: 231 -SCYVQXD 237


>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
          Length = 580

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 194/566 (34%), Positives = 298/566 (52%), Gaps = 81/566 (14%)

Query: 48  ARYLFDIMPER---DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           A+Y+  ++      D  +W   I    + G+ +EA  L+  M       W    + F  +
Sbjct: 55  AQYVHSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQ-----RWGLCPTTFALS 109

Query: 105 GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT 164
             +        RM G         + G +Q            K G  C G  D +     
Sbjct: 110 SALKACARIAYRMGGIS-------IHGQVQ------------KFGFSCGG--DGIYVETA 148

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           L+  Y + G +E ARK+FD++             +RN+VSWNSM+  Y K+GD+V A+ +
Sbjct: 149 LVDFYCKLGDMEIARKMFDEMA------------ERNVVSWNSMLAGYLKSGDLVVAQRV 196

Query: 225 FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
           F+++ ++D  SWN+MISGY    DME+AS+LF +MP  +  +WNAM+SG+ + G+++ A 
Sbjct: 197 FDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSAR 256

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE------------------ 326
            FF  MPQKN VSW +MI+G     D + A +LF Q  V G+                  
Sbjct: 257 SFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQ--VGGKDLLLFNAMIACYAQNSRP 314

Query: 327 -----------------KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINN 368
                            +PD  T +S++S  S + DL  G  I   + +  I  D  +  
Sbjct: 315 NEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLAT 374

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           AL+ +YA+CG+I +A  +F  ++  K++V++ AMI GC  +G A +A++LF  M   ++ 
Sbjct: 375 ALLDLYAKCGSIDKAYELFHGLRK-KDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 433

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P  ITFI +L+A  HAGLVEEG + F SM  +Y + P ++H+  +VD+ GR GRL++A++
Sbjct: 434 PNSITFIGLLTAYNHAGLVEEGYRCFTSM-KKYNLVPSVDHYGIMVDLFGRAGRLQEALE 492

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           LIK MP +P   VWGALL ACR+HNNVE  ++AA+   ++EP+ +    LL N+YA   R
Sbjct: 493 LIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGER 552

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVD 574
           WDD   +R + K     K  G SW++
Sbjct: 553 WDDVKRLRKVTKEKGFSKIPGCSWME 578



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 126/408 (30%), Positives = 196/408 (48%), Gaps = 82/408 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K  +M  ARK+FDEM +R+VVSWN M++GY+ S   G L  A+ +FD +P++D 
Sbjct: 149 LVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKS---GDLVVAQRVFDEIPQKDV 205

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++WN++ISGYA+ G+ME+A  LF  MP RN  SWNAMISG ++ GD+ +A  FFD MP +
Sbjct: 206 ISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQK 265

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           ++ S   ++SG  + G++D A  +  +      GG+DL+  +N +I  Y Q  R  EA  
Sbjct: 266 NNVSWMTMISGYSKCGDVDSACELFDQV-----GGKDLL-LFNAMIACYAQNSRPNEALN 319

Query: 181 LFDKI---PVNCDRGE-------------GNVRFKRNIVSW-------------NSMIMC 211
           LF+ +    VN    E             G++RF   I S+              +++  
Sbjct: 320 LFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDL 379

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISG----------------------------- 242
           YAK G +  A E+F  + ++D  ++  MI G                             
Sbjct: 380 YAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITF 439

Query: 243 ------YIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMP- 291
                 Y H   +EE    F  M      P    +  MV  + + G L+ AL+  K MP 
Sbjct: 440 IGLLTAYNHAGLVEEGYRCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPM 499

Query: 292 QKNLVSWNSMIAGCETNKDYE-GAIKLFIQMQVEGEKPDRHTFSSILS 338
           Q +   W +++  C  + + E G I      ++E   PD   + S+LS
Sbjct: 500 QPHAGVWGALLLACRLHNNVEFGEIAAQHCFELE---PDTTGYRSLLS 544


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 221/715 (30%), Positives = 343/715 (47%), Gaps = 147/715 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           +I  Y K   +  ARK+FD +  +D VSW  MISG+     +G+ EEA +LF       I
Sbjct: 153 LIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGF---SQNGYEEEAIHLFCEMHTAGI 209

Query: 55  MPERDCVTWNTVISGYAK-----TGEMEEAL----------------------------- 80
            P      +++V+SG  K      GE   AL                             
Sbjct: 210 FPTP--YVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSA 267

Query: 81  -RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQN 135
            ++F+ M +++ VS+N++ISG  Q G    A+E F +M       D  ++++L+S    N
Sbjct: 268 EKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASN 327

Query: 136 GELDEAARV---LVKCGSRCD------------GGEDLVRAY--------------NTLI 166
           G L +  ++   ++K G   D               D+  A+              N ++
Sbjct: 328 GALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVML 387

Query: 167 VGYGQRGRVEEARKLFDKIPV---------------NC------DRGEG------NVRFK 199
           V +G+   + E+ ++F ++ +                C      D GE          F+
Sbjct: 388 VAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQ 447

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
            N+   + +I  YAK G + +A  I   + E D  SW  +ISGY       EA   F +M
Sbjct: 448 FNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEM 507

Query: 260 PH---------------------------------------PDTLTWNAMVSGYAQIGNL 280
            +                                        D    NA+VS YA+ G +
Sbjct: 508 LNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRI 567

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           + A   F+++  K+ +SWN +I+G   +   E A+K+F QM     +    TF S +S +
Sbjct: 568 KEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAA 627

Query: 341 SGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           + I ++  G QIH M+ K     D+ ++NALIT YA+CG+I +AR  F EM   KN VSW
Sbjct: 628 ANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPE-KNDVSW 686

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           NAMI G + HG+  EA+ LF+ M+    +P ++TF+ VLSAC+H GLV +G  +F+SM  
Sbjct: 687 NAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSK 746

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
           E+G+ P+  H+A +VD++ R G L  A   I+ MP EPD  +W  LL AC VH NVE+ +
Sbjct: 747 EHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGE 806

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            AA+ L+++EPE+S  YVLL NMYA  G+WD  ++ R +M++  +KK  G SW++
Sbjct: 807 FAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIE 861



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 147/548 (26%), Positives = 256/548 (46%), Gaps = 81/548 (14%)

Query: 16  KLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC----VTWNTVI---S 68
           K+F++MP R V SW+ +ISG++  + S  + +   LF  M E +     +++ +V+   S
Sbjct: 66  KVFEDMPNRSVRSWDKIISGFMEKKMSNRVLD---LFSCMIEENVSPTEISFASVLRACS 122

Query: 69  GY---AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
           G+    +  E   A  + + +    ++S N +I  + +NG + +A + FD +  +DS S 
Sbjct: 123 GHRIGIRYAEQIHARIICHGLLCSPIIS-NPLIGLYAKNGLIISARKVFDNLCTKDSVSW 181

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
            A++SG  QNG  +EA  +   C     G       +++++ G  +        KLFD  
Sbjct: 182 VAMISGFSQNGYEEEAIHLF--CEMHTAGIFPTPYVFSSVLSGCTK-------IKLFD-- 230

Query: 186 PVNCDRGEGNVRFKRNIVSW--NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
            V         ++  ++ ++  N+++  Y++  + VSA ++F +M  +D  S+N++ISG 
Sbjct: 231 -VGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGL 289

Query: 244 IHVLDMEEASNLFVKMPH----PDTLTWNAMVSG-------------------------- 273
                 + A  LF KM      PD +T  +++S                           
Sbjct: 290 AQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDM 349

Query: 274 ---------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
                    Y    +++ A + F     +N+V WN M+       +   + ++F QMQ++
Sbjct: 350 IVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIK 409

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEA 383
           G  P++ T+ SIL   + +  L LG QIH  V KT    +V + + LI MYA+ G +  A
Sbjct: 410 GLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTA 469

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
            +I   +    +VVSW A+I G A H    EAL+ FK M +  +    I F S +SACA 
Sbjct: 470 HVILRTLT-EDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAG 528

Query: 444 AGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE----PD 498
              + +GRQ H +S V+ Y  +  I +  +LV +  R GR+++A      + FE     D
Sbjct: 529 IQALNQGRQIHAQSYVSGYSEDLSIGN--ALVSLYARCGRIKEAY-----LEFEKIDAKD 581

Query: 499 KAVWGALL 506
              W  L+
Sbjct: 582 SISWNGLI 589



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 222/496 (44%), Gaps = 89/496 (17%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V  N ++  Y   G+++  +++F  MP R+V SW+ +ISGF++            +M  R
Sbjct: 46  VLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEK-----------KMSNR 94

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
                S ++   +   E+  A+ VL  C                     G R  +  A +
Sbjct: 95  VLDLFSCMIEENVSPTEISFAS-VLRACS--------------------GHRIGIRYAEQ 133

Query: 181 LFDKIPVN---CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           +  +I  +   C            I+S N +I  YAK G ++SAR++F+ +  +D+ SW 
Sbjct: 134 IHARIICHGLLCSP----------IIS-NPLIGLYAKNGLIISARKVFDNLCTKDSVSWV 182

Query: 238 TMISGYIHVLDMEEASNLFVKM------PHP----------------------------- 262
            MISG+      EEA +LF +M      P P                             
Sbjct: 183 AMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKY 242

Query: 263 ----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
               +T   NA+V+ Y+++ N   A   F +M  K+ VS+NS+I+G       +GA++LF
Sbjct: 243 GSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELF 302

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARC 377
            +M+ +  KPD  T +S+LS  +    L  G Q+H  V K  I  D+ +  AL+ +Y  C
Sbjct: 303 TKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNC 362

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
             I  A  +F   +  +NVV WN M+         +E+  +F+ M+   ++P   T+ S+
Sbjct: 363 SDIKTAHEMFLTAQ-TENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSI 421

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           L  C   G ++ G Q   + V + G +  +   + L+D+  +HG+L+ A  +++ +  E 
Sbjct: 422 LRTCTSVGALDLGEQ-IHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT-ED 479

Query: 498 DKAVWGALLGACRVHN 513
           D   W AL+     HN
Sbjct: 480 DVVSWTALISGYAQHN 495


>gi|255559140|ref|XP_002520592.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540252|gb|EEF41825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 525

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 177/503 (35%), Positives = 284/503 (56%), Gaps = 88/503 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---E 57
           MI+GY+   ++ +A +LF +MP+RD+ SW +MI+ Y  +   G LE+A+ L + +P   +
Sbjct: 43  MIAGYLHNNKVDEAYELFVKMPRRDLFSWTLMITCYTQN---GMLEKAKQLLNSLPCNYK 99

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           +D   WN +ISGY++ G  ++A RLFN MP +N+VSWN+M++G+ QNG ++ A++ F  M
Sbjct: 100 KDAACWNAMISGYSREGRYDDAKRLFNEMPVKNIVSWNSMLAGYTQNGQMSLALQLFHEM 159

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
             RD  S + +V G ++ G+LD A     K        E  + ++ T++ G+ ++G++ E
Sbjct: 160 LERDVVSWNLMVDGFVELGDLDSAWEFFKKV------PEPNIVSWVTMLYGFARKGKLLE 213

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           AR+LFD++P             +N+VSWN+MI  Y ++  +  A ++FE+M +RD+ SW 
Sbjct: 214 ARRLFDQMP------------SKNVVSWNAMISAYVQSRQIDEAEKLFEEMPKRDSVSWT 261

Query: 238 TMISGYIHVLDMEEASNLFVKMPH-------------------------------PDTLT 266
           TMI+GY+    ++EA     K+P+                               PD + 
Sbjct: 262 TMINGYVRAGKLDEARKTLSKLPYKNIAAQTAMISGYIKYNKIDEARQIFNEIGTPDMVC 321

Query: 267 WNAMVSGYAQ-------------------------------IGNLELALDFFKRMPQKNL 295
           +N M++GY Q                               +G +E AL  FK M ++NL
Sbjct: 322 FNTMLAGYTQCGRVDEAIHLFEQMVKKDIVSWNTMVAAYAQVGQMERALKVFKEMGERNL 381

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           VSWNS+I+G   +  Y  A+  F+ MQ EG+KPD+ TF+  LS  + +  L +G Q+H +
Sbjct: 382 VSWNSLISGFMLHGMYLDALWCFVLMQHEGKKPDQSTFACALSSCAIVAALQVGRQLHHL 441

Query: 356 VTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           V K+  I D+ + NALITMYA+CG I+EA+++F+ +    +VVSWN++IGG A +G   E
Sbjct: 442 VIKSGYINDLFVCNALITMYAKCGKILEAKLVFKGI-CNADVVSWNSLIGGYALNGCGEE 500

Query: 415 ALELFKSMRSFKVLPTYITFISV 437
           AL LF+ M+   V+P  +TFI V
Sbjct: 501 ALTLFEEMKLAGVVPDQVTFIGV 523



 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 163/509 (32%), Positives = 260/509 (51%), Gaps = 75/509 (14%)

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
           M +R+ VT+N++IS YAK G + +A  LF+ MP RN+VSWN MI+G+L N  V  A E F
Sbjct: 1   MSQRNTVTYNSMISAYAKNGRVIDARVLFDKMPCRNLVSWNTMIAGYLHNNKVDEAYELF 60

Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAARVL--VKCGSRCDGGEDLVRAYNTLIVGYGQR 172
            +MP RD  S + +++   QNG L++A ++L  + C  + D        +N +I GY + 
Sbjct: 61  VKMPRRDLFSWTLMITCYTQNGMLEKAKQLLNSLPCNYKKDAA-----CWNAMISGYSRE 115

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           GR ++A++LF+++PV            +NIVSWNSM+  Y + G +  A ++F +MLERD
Sbjct: 116 GRYDDAKRLFNEMPV------------KNIVSWNSMLAGYTQNGQMSLALQLFHEMLERD 163

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
             SWN M+ G++ + D++ A   F K+P P+ ++W  M+ G+A+ G L  A   F +MP 
Sbjct: 164 VVSWNLMVDGFVELGDLDSAWEFFKKVPEPNIVSWVTMLYGFARKGKLLEARRLFDQMPS 223

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQM--------------QVEGEKPD--RHTFSSI 336
           KN+VSWN+MI+    ++  + A KLF +M               V   K D  R T S +
Sbjct: 224 KNVVSWNAMISAYVQSRQIDEAEKLFEEMPKRDSVSWTTMINGYVRAGKLDEARKTLSKL 283

Query: 337 --------LSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFE 388
                    +M SG +  +   +  Q+  +   PD+   N ++  Y +CG + EA  +FE
Sbjct: 284 PYKNIAAQTAMISGYIKYNKIDEARQIFNEIGTPDMVCFNTMLAGYTQCGRVDEAIHLFE 343

Query: 389 EM-------------------------KLLK-----NVVSWNAMIGGCASHGFATEALEL 418
           +M                         K+ K     N+VSWN++I G   HG   +AL  
Sbjct: 344 QMVKKDIVSWNTMVAAYAQVGQMERALKVFKEMGERNLVSWNSLISGFMLHGMYLDALWC 403

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  M+     P   TF   LS+CA    ++ GRQ    +V + G    +    +L+ +  
Sbjct: 404 FVLMQHEGKKPDQSTFACALSSCAIVAALQVGRQ-LHHLVIKSGYINDLFVCNALITMYA 462

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           + G++ +A  + KG+    D   W +L+G
Sbjct: 463 KCGKILEAKLVFKGIC-NADVVSWNSLIG 490


>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 189/562 (33%), Positives = 295/562 (52%), Gaps = 62/562 (11%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEAL 80
           D   WN +I  +   +     ++A  LF +M E     D  + + V+   ++ G ++  L
Sbjct: 89  DPFLWNAVIKSHSHGKDP---KQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGL 145

Query: 81  RLFNSMPARNVVS----WNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG 136
           ++   +    + S     N +I  +L+ G +  A + FDRMP RDS S            
Sbjct: 146 QIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVS------------ 193

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
                                    +N++I GY +RG +E AR+LFD +P          
Sbjct: 194 -------------------------FNSMIDGYVKRGLIESARELFDLMP---------- 218

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
           R  +N++SWNS+I  YA+  D V  A  +F +M E+D  SWN+MI GY+    +E+A +L
Sbjct: 219 REVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDL 278

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           F  MP  D +TW  M+ GYA++G +  A   F +MP +++VS+NSM+AG   NK +  A+
Sbjct: 279 FDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYHMEAL 338

Query: 316 KLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITM 373
           ++F  M+ E    PD  T   +LS  + +  L   M +H  +V K       +  ALI M
Sbjct: 339 EIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDM 398

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           Y++CG+I  A ++FE ++  K++  WNAMIGG A HG    A ++   +    + P  IT
Sbjct: 399 YSKCGSIQHAMLVFEGIEN-KSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDIT 457

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           F+ VL+AC+H+GLV+EG   F+ M  ++ IEPR++H+  +VDI+ R G +E A +LI+ M
Sbjct: 458 FVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIQEM 517

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           P EP+  +W   L AC  H   E  ++  + L+     N + YVLL NMYA  G+W D  
Sbjct: 518 PIEPNDVIWRTFLTACNHHKEFETGELVGKHLILQAGYNPSSYVLLSNMYASFGKWKDVR 577

Query: 554 EVRLLMKSNNIKKPTGYSWVDF 575
            +R +MK   I+K  G SW++ 
Sbjct: 578 RIRTMMKERKIEKIPGCSWIEL 599



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 174/359 (48%), Gaps = 62/359 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQ--RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           MI GYVKR  +  AR+LFD MP+  ++++SWN +ISGY  ++ S  ++ A  LF  MPE+
Sbjct: 197 MIDGYVKRGLIESARELFDLMPREVKNLISWNSIISGY--AQTSDGVDIASNLFAEMPEK 254

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D ++WN++I GY K G +E+A  LF++MP R+VV+W  MI G+ + G V  A   FD+MP
Sbjct: 255 DLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMP 314

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV---GYGQRGRV 175
            RD  S +++++G +QN    EA  +     S  +    L     TL++      Q GR+
Sbjct: 315 HRDVVSYNSMMAGYVQNKYHMEALEIF----SDMEKESHLSPDETTLVIVLSAIAQLGRL 370

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
            +A  +   I        G +          ++I  Y+K G +  A  +FE +  +    
Sbjct: 371 SKAMDMHLYIVEKQFFLGGKLGV--------ALIDMYSKCGSIQHAMLVFEGIENKSIDH 422

Query: 236 WNTMISGY-IHVLDMEEASNLFVKMPH----PDTLT------------------------ 266
           WN MI G  IH L  E A ++ +++      PD +T                        
Sbjct: 423 WNAMIGGLAIHGLG-ESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELM 481

Query: 267 ------------WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
                       +  MV   ++ G++ELA +  + MP + N V W + +  C  +K++E
Sbjct: 482 RRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHHKEFE 540


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 187/587 (31%), Positives = 317/587 (54%), Gaps = 48/587 (8%)

Query: 21  MPQRDVVSWNVMISGYISS----------------RGSGFLEEARYLFDIMPERDCVTWN 64
           + QRD+++  ++ + Y  S                   G L  A+  F +    +  ++N
Sbjct: 20  IAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLTQYPNVFSYN 79

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GR 120
           T+I+ YAK   +  A R+F+ +P  ++VS+N +I+ +   G+    +  F+ +     G 
Sbjct: 80  TLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGL 139

Query: 121 DSASLSALVSGLIQN-GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           D  +LS +++    + G + +    +V CG  C    +     N ++  Y ++G + EAR
Sbjct: 140 DGFTLSGVITACGDDVGLVRQLHCFVVVCGHDCYASVN-----NAVLACYSRKGFLSEAR 194

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFS 235
           ++F ++      GEG     R+ VSWN+MI+   +  + + A  +F +M+ R    D F+
Sbjct: 195 RVFREM------GEGG---GRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFT 245

Query: 236 WNTMISGYIHVLDM---EEASNLFVKMP-HPDTLTWNAMVSGYAQI-GNLELALDFFKRM 290
             ++++ +  V D+    +   + +K   H ++   + ++  Y++  G++      F+ +
Sbjct: 246 MASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEI 305

Query: 291 PQKNLVSWNSMIAGCETNKDY-EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
              +LV WN+MI+G    +D  E  +  F +MQ  G +PD  +F  + S  S +    LG
Sbjct: 306 TAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLG 365

Query: 350 MQIHQMVTKTVIP--DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
            Q+H +  K+ +P   V +NNAL+ MY++CG + +AR +F+ M    N VS N+MI G A
Sbjct: 366 KQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPE-HNTVSLNSMIAGYA 424

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
            HG   E+L LF+ M    + P  ITFI+VLSAC H G VEEG+++F  M   + IEP  
Sbjct: 425 QHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEA 484

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
           EH++ ++D++GR G+L++A  +I+ MPF P    W  LLGACR H NVELA  AA   ++
Sbjct: 485 EHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLR 544

Query: 528 VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +EP N+ PYV+L NMYA   RW++A  V+ LM+   +KK  G SW++
Sbjct: 545 LEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIE 591



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 126/517 (24%), Positives = 201/517 (38%), Gaps = 133/517 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG----FLEEARYL----- 51
           +I+ Y K   +  AR++FDE+PQ D+VS+N +I+ Y      G      EE R L     
Sbjct: 81  LINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLD 140

Query: 52  -----------------------FDIMPERDCVTW--NTVISGYAKTGEMEEALRLFNSM 86
                                  F ++   DC     N V++ Y++ G + EA R+F  M
Sbjct: 141 GFTLSGVITACGDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREM 200

Query: 87  ---PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD 139
                R+ VSWNAMI    Q+ +   A+  F  M  R    D  +++++++         
Sbjct: 201 GEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFT------ 254

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
                   C     GG    R ++ +++  G  G              N   G G     
Sbjct: 255 --------CVKDLVGG----RQFHGMMIKSGFHG--------------NSHVGSG----- 283

Query: 200 RNIVSWNSMIMCYAK-AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEE------- 251
                   +I  Y+K AG +V  R++FE++   D   WNTMISG+    D+ E       
Sbjct: 284 --------LIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFR 335

Query: 252 --------------------ASNLF--------------VKMPHPDTLTWNAMVSGYAQI 277
                                SNL                 +P+      NA+V+ Y++ 
Sbjct: 336 EMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKC 395

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
           GN+  A   F  MP+ N VS NSMIAG   +     +++LF  M  +   P+  TF ++L
Sbjct: 396 GNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVL 455

Query: 338 SMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           S       +  G +   M+ +   + P+    + +I +  R G + EA  I E M     
Sbjct: 456 SACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPG 515

Query: 396 VVSWNAMIGGCASHG---FATEALELFKSMRSFKVLP 429
            + W  ++G C  HG    A +A   F  +  +   P
Sbjct: 516 SIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAP 552



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEE 389
            TF ++L       DL  G  +H +  K++I P   ++N    +Y++CG++  A+  F  
Sbjct: 10  QTFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSF-H 68

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +    NV S+N +I   A H     A  +F  +      P  +++ ++++A A  G
Sbjct: 69  LTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQ----PDIVSYNTLIAAYADRG 120


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 205/667 (30%), Positives = 332/667 (49%), Gaps = 114/667 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS------------------ 42
           M++GY K+  ++ A +LFD MP+RDV SWN ++S      GS                  
Sbjct: 93  MMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLG 152

Query: 43  ------------------------GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEE 78
                                   G+++ A  LF  +        N++++GYAK   ++ 
Sbjct: 153 LFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDH 212

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQ 134
           A+  F  M  R+VVSWN MI+   Q+G V  A+     M  +    DS + ++ ++   +
Sbjct: 213 AIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACAR 272

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
              L    ++  K        +  V +   LI  Y + G  +EA+++F+ +         
Sbjct: 273 LFSLGWGKQLHAKVIRSLPQIDPYVAS--ALIELYAKCGSFKEAKRVFNSLQ-------- 322

Query: 195 NVRFKRNIVSWNSMI------MCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYI 244
                RN VSW  +I       C++K      + E+F QM    +  D F+  T+ISG  
Sbjct: 323 ----DRNSVSWTVLIGGSLQYECFSK------SVELFNQMRAELMAIDQFALATLISGCF 372

Query: 245 HVLD-----------------------------------MEEASNLFVKMPHPDTLTWNA 269
           + +D                                   ++ A  +F  M   D ++W +
Sbjct: 373 NRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTS 432

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KP 328
           M++ Y+QIGN+  A +FF  M  +N ++WN+M+     +   E  +K++  M  + +  P
Sbjct: 433 MITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTP 492

Query: 329 DRHTFSSILSMSSGIVDLHLGMQ-IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIF 387
           D  T+ ++    + I    LG Q I   V   +I +V + NA ITMY++CG I EA+ +F
Sbjct: 493 DWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLF 552

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
           + +   K+VVSWNAMI G + HG   +A + F  M S    P YI++++VLS C+H+GLV
Sbjct: 553 DLLN-GKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLV 611

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           +EG+ +F  M   +GI P +EHF+ +VD++GR G L +A DLI  MP +P   VWGALL 
Sbjct: 612 QEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLS 671

Query: 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
           AC++H N ELA++AA+ + +++  +S  Y+LL  +Y+D G+ DD+ +VR LM+   IKK 
Sbjct: 672 ACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKN 731

Query: 568 TGYSWVD 574
            GYSW++
Sbjct: 732 PGYSWME 738



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 137/595 (23%), Positives = 261/595 (43%), Gaps = 91/595 (15%)

Query: 8   RREMAKARKLFDEMPQRDVVS----WNVMISGYISSRGSGFLEEARYLFDI-MPERDCVT 62
           R  +A AR L   +    + S     N ++  Y+S    G L +AR L    + E + +T
Sbjct: 33  RGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSC---GALSDARRLLRADIKEPNVIT 89

Query: 63  WNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMIS------GFLQNGDVANAIEFFDR 116
            N +++GYAK G + +A  LF+ MP R+V SWN ++S      G   +       E   +
Sbjct: 90  HNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQ 149

Query: 117 MPGR--------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           + G         D    +ALV   ++ G +D A+R+  +           +   N+++ G
Sbjct: 150 LLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQI------ERPTIFCRNSMLAG 203

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y +   ++ A + F+ +             +R++VSWN MI   +++G V  A  +  +M
Sbjct: 204 YAKLYGIDHAIEYFEDMA------------ERDVVSWNMMIAALSQSGRVREALGLVVEM 251

Query: 229 LER----DTFSWNTMISGYIHVLDMEEASNLFVK----MPHPDTLTWNAMVSGYAQIGNL 280
             +    D+ ++ + ++    +  +     L  K    +P  D    +A++  YA+ G+ 
Sbjct: 252 HRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSF 311

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           + A   F  +  +N VSW  +I G    + +  +++LF QM+ E    D+   ++++S  
Sbjct: 312 KEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 371

Query: 341 SGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMK-------- 391
              +DL LG Q+H +  K+     + ++N+LI++YA+CG +  A  +F  M         
Sbjct: 372 FNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWT 431

Query: 392 ----------------------LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK-VL 428
                                   +N ++WNAM+G    HG   + L+++ +M S K V 
Sbjct: 432 SMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVT 491

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA-- 486
           P ++T++++   CA  G  + G Q     V   G+   +    + + +  + GR+ +A  
Sbjct: 492 PDWVTYVTLFRGCADIGANKLGDQIIGHTVKA-GLILNVSVANAAITMYSKCGRISEAQK 550

Query: 487 -MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
             DL+ G     D   W A++     H    + + AA+    +  + + P  + Y
Sbjct: 551 LFDLLNG----KDVVSWNAMITGYSQHG---MGKQAAKTFDDMLSKGAKPDYISY 598



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 130/526 (24%), Positives = 249/526 (47%), Gaps = 53/526 (10%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           +A T  + +ALR   S  +R  ++    + G L    +A+A+ F            + L+
Sbjct: 17  HAVTQALADALR---SCGSRGALAGARALHGRLVTVGLASAV-FLQ----------NTLL 62

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
              +  G L +A R+L     R D  E  V  +N ++ GY ++G + +A +LFD++P   
Sbjct: 63  HAYLSCGALSDARRLL-----RADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMP--- 114

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAK-AGDVVSA-----REIFEQMLER--------DTFS 235
                    +R++ SWN+++   ++ AG  +S      RE+  Q+L          D   
Sbjct: 115 ---------RRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDV 165

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
              ++  ++    ++ AS LF ++  P     N+M++GYA++  ++ A+++F+ M ++++
Sbjct: 166 ETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDV 225

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           VSWN MIA    +     A+ L ++M  +G + D  T++S L+  + +  L  G Q+H  
Sbjct: 226 VSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAK 285

Query: 356 VTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           V +++    P + +ALI +YA+CG+  EA+ +F  ++  +N VSW  +IGG   +   ++
Sbjct: 286 VIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ-DRNSVSWTVLIGGSLQYECFSK 344

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           ++ELF  MR+  +        +++S C +   +  GRQ   S+  + G    I    SL+
Sbjct: 345 SVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ-LHSLCLKSGHNRAIVVSNSLI 403

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
            +  + G L++A  +   M  E D   W +++ A     N+  A+   E    +   N+ 
Sbjct: 404 SLYAKCGDLQNAEFVFSSMS-ERDIVSWTSMITAYSQIGNIIKAR---EFFDGMATRNAI 459

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD-FSPCG 579
            +  +   Y   G  +D  ++   M S     P   ++V  F  C 
Sbjct: 460 TWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCA 505


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 199/621 (32%), Positives = 332/621 (53%), Gaps = 62/621 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           ++  Y+K   +   R++FDEM +R+VVSW  +++GY  +   G++ E   LF       +
Sbjct: 134 LVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWE---LFCQMQYEGV 190

Query: 55  MPERDCVT---------------------------------WNTVISGYAKTGEMEEALR 81
           +P R  V+                                 +N++IS Y++ G + +A  
Sbjct: 191 LPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARD 250

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN-GELDE 140
           +F+ M  R+ V+WN+MI+G+++NG      E F++M            + +I++   L E
Sbjct: 251 VFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRE 310

Query: 141 AARV-LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
            A V L++C +   G          L+V   +   +++A  LF  +       EG     
Sbjct: 311 LALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLME------EG----- 359

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNL 255
           +N+VSW +MI    + G    A  +F QM    ++ + F+++ +++ +  V   E  + +
Sbjct: 360 KNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEV 419

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
                   +    A++  Y ++GN   A+  F+ +  K+L++W++M+AG     + E A 
Sbjct: 420 IKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAA 479

Query: 316 KLFIQMQVEGEKPDRHTFSSIL-SMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITM 373
           KLF Q+  EG KP+  TFSS++ + +S       G Q H    K  + + + +++AL+TM
Sbjct: 480 KLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTM 539

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           YA+ G I  A  +F+  K  +++VSWN+MI G + HG A +ALE+F  M+   +    +T
Sbjct: 540 YAKRGNIDSAHEVFKRQK-ERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVT 598

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           FI V++AC HAGLVE+G+++F SM+N++ I P ++H++ ++D+  R G LE AM +I  M
Sbjct: 599 FIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEM 658

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           PF P   VW  LLGA RVH NVEL ++AAE L+ ++PE+S  YVLL NMYA  G W +  
Sbjct: 659 PFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERT 718

Query: 554 EVRLLMKSNNIKKPTGYSWVD 574
            VR LM    +KK  GYSW++
Sbjct: 719 NVRKLMDKRKVKKEPGYSWIE 739



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 234/478 (48%), Gaps = 54/478 (11%)

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------P 118
           +++  Y KT  + +  R+F+ M  RNVVSW ++++G+  NG      E F +M      P
Sbjct: 133 SLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLP 192

Query: 119 GRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
            R   ++S +++ L+  G +    +V   +VK      G E+ +  +N+LI  Y + G +
Sbjct: 193 NR--YTVSTVIAALVNEGVVGIGLQVHAMVVK-----HGFEEAIPVFNSLISLYSRLGML 245

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LER 231
            +AR +FDK+ +            R+ V+WNSMI  Y + G  +   EIF +M    ++ 
Sbjct: 246 RDARDVFDKMEI------------RDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKP 293

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFF 287
              ++ ++I     + ++     +  K        D +   A++   ++   ++ AL  F
Sbjct: 294 THMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLF 353

Query: 288 KRMPQ-KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
             M + KN+VSW +MI+GC  N   + A+ LF QM+ EG KP+  T+S+IL++   +   
Sbjct: 354 SLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPV--- 410

Query: 347 HLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
               ++H  V KT       +  AL+  Y + G  ++A  +FE ++  K++++W+AM+ G
Sbjct: 411 -FVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIE-AKDLMAWSAMLAG 468

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH-AGLVEEGRQHFKSMVNEYGIE 464
            A  G   EA +LF  +    + P   TF SV++ACA      E+G+Q      + Y I+
Sbjct: 469 YAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQ-----FHAYAIK 523

Query: 465 PRIEHF----ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            R+ +     ++LV +  + G ++ A ++ K    E D   W +++     H   + A
Sbjct: 524 MRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQK-ERDLVSWNSMISGYSQHGQAKKA 580



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 132/259 (50%), Gaps = 8/259 (3%)

Query: 281 ELALDFFKRMPQK--NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
            +A + F ++P +   L   N ++     +K  + A+ LF+ +     +PD  T S + +
Sbjct: 42  HIAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFN 101

Query: 339 MSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
           + +G +D  LG Q+H Q V   ++  V +  +L+ MY +   + + R +F+EM   +NVV
Sbjct: 102 ICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMG-ERNVV 160

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SW +++ G + +G      ELF  M+   VLP   T  +V++A  + G+V  G Q   +M
Sbjct: 161 SWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQ-VHAM 219

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL-GACRVHNNVE 516
           V ++G E  I  F SL+ +  R G L DA D+   M    D   W +++ G  R   ++E
Sbjct: 220 VVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIR-DWVTWNSMIAGYVRNGQDLE 278

Query: 517 LAQVAAE-ALMKVEPENST 534
           + ++  +  L  V+P + T
Sbjct: 279 VFEIFNKMQLAGVKPTHMT 297



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 25/221 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +++ Y KR  +  A ++F    +RD+VSWN MISGY S  G    ++A  +FD M +R  
Sbjct: 536 LVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGY-SQHGQA--KKALEVFDEMQKRNM 592

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
             D VT+  VI+     G +E+  + FNSM   + ++     ++ MI  + + G +  A+
Sbjct: 593 DVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAM 652

Query: 112 EFFDRMPGRDSASLSALVSG---LIQNGELDE-AARVLVKCGSRCDGGEDLVRAYNTLIV 167
              + MP    A++   + G   + +N EL E AA  L+         ED   AY  L  
Sbjct: 653 GIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQP-----EDSA-AYVLLSN 706

Query: 168 GYGQRGRVEE---ARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
            Y   G  +E    RKL DK  V  + G   +  K    S+
Sbjct: 707 MYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSF 747


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 184/521 (35%), Positives = 281/521 (53%), Gaps = 45/521 (8%)

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           +DC   +  IS       +   +  F  M   NV  +NAMI GF+  G    A++ +  M
Sbjct: 69  QDCFLVHQFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHM 128

Query: 118 PGRDSA-SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               +    S   S L++             C   C              V  GQ     
Sbjct: 129 LEESNVLPTSYTFSSLVK------------ACTFMC-------------AVELGQM---- 159

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
                     V+C   +    F+ ++    +++  Y+K   +  AR++F++M ERD F+W
Sbjct: 160 ----------VHCHIWKKG--FESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAW 207

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
             M+S    V DM+ A  LF +MP  +T TWN M+ GY ++GN+E A   F +MP K+++
Sbjct: 208 TAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDII 267

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SW +MI     NK Y+ A+ ++ +M++ G  PD  T S++ S  + I  L LG +IH  V
Sbjct: 268 SWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYV 327

Query: 357 -TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            ++ +  DV I +AL+ MYA+CG++  + +IF ++   KN+  WNA+I G A HG+A +A
Sbjct: 328 MSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTD-KNLYCWNAVIEGLAVHGYAEKA 386

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L +F  M   K++P  +TFIS+LSAC HAGLV+EGR  F SM  +Y I P I H+  +VD
Sbjct: 387 LRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVD 446

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++ + G L +A++LIK M FEP+  +WGALL  C++H N E+A+ A E LM +EP NS  
Sbjct: 447 MLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGH 506

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNI-KKPTGYSWVDF 575
           Y LL +MYA+   W +   +R +MK   + KK  G SW++ 
Sbjct: 507 YNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIEL 547



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 158/332 (47%), Gaps = 39/332 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K   +++ARK+FDEM +RD  +W  M+S        G ++ AR LF+ MPER+ 
Sbjct: 179 LVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSALARV---GDMDSARKLFEEMPERNT 235

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            TWNT+I GY + G +E A  LFN MP ++++SW  MI+ + QN    +A+  +  M   
Sbjct: 236 ATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLN 295

Query: 121 ----DSASLSALVSGLIQNGELD---EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
               D  ++S + S     G L+   E    ++  G   D     V   + L+  Y + G
Sbjct: 296 GIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLD-----VYIGSALVDMYAKCG 350

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
            ++ +  +F K+              +N+  WN++I   A  G    A  +F  ++ER+ 
Sbjct: 351 SLDLSLLIFFKLT------------DKNLYCWNAVIEGLAVHGYAEKALRMF-AIMEREK 397

Query: 234 FSWN-----TMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELA 283
              N     +++S   H   ++E  + F+ M       PD   +  MV   ++ G L  A
Sbjct: 398 IMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEA 457

Query: 284 LDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
           L+  K M  + N + W +++ GC+ + + E A
Sbjct: 458 LELIKSMEFEPNSIIWGALLNGCKLHGNCEIA 489


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 213/712 (29%), Positives = 333/712 (46%), Gaps = 163/712 (22%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           A + F  +P  +V S+N  IS    +   G L  AR L   MP+R+ V+WNTVI+  A++
Sbjct: 64  ALRAFRALPHPNVYSYNAAISAACRA---GDLAAARDLLGRMPDRNAVSWNTVIAAVARS 120

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISG------------------------------FLQ 103
           G   EAL ++  M    +   N  ++                               F++
Sbjct: 121 GSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVE 180

Query: 104 NG---------DVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR----------- 143
           NG          VA+A+  FD MP  +  S +A++ GL Q G +D+A R           
Sbjct: 181 NGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIR 240

Query: 144 --------VLVKCGSRCDGGEDLVRA---------------------------------- 161
                   VL  C   C G  ++ RA                                  
Sbjct: 241 VDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGM 300

Query: 162 -------------------YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
                              +N LI GYGQ G  E A ++ + +  +         F+ N 
Sbjct: 301 KMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQES--------GFEPNE 352

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH- 261
           V++++M+    KA DV SAR +F+++ +    +WNT++SGY      +E  +LF +M H 
Sbjct: 353 VTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQ 412

Query: 262 ---PDTLTWNAMVSGYAQIGNLEL-----------------------------------A 283
              PD  T   ++S  +++GN EL                                   A
Sbjct: 413 NVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIA 472

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
           L  F  M ++++V WNSMI+G   +   E A     QM+  G  P   +++S++++ + +
Sbjct: 473 LIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARL 532

Query: 344 VDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             +  G Q+H  V K     +V +  +LI MYA+ G + +AR+ F  M ++KN+V+WN M
Sbjct: 533 SSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCM-IVKNLVAWNEM 591

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I G A +GF  +A+ELF+ M + K  P  +TFI+VL+ C+H+GLV+E    F SM + YG
Sbjct: 592 IHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYG 651

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           I P +EH+  L+D + R  R  +   +I  MP++ D  +W  LL AC VH+N EL + +A
Sbjct: 652 ITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAACVVHHNAELGEFSA 711

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + L +++P+N +PYVLL N+YA +GR  DA+ VR LM S  + K  GYSWV+
Sbjct: 712 KHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVN 763



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/546 (24%), Positives = 234/546 (42%), Gaps = 134/546 (24%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D    N ++  Y+ +G    ALR F ++P  NV S+NA IS   + GD+A A +   RMP
Sbjct: 44  DTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRAGDLAAARDLLGRMP 103

Query: 119 GRDSASLSALVSGLIQNGELDEA-------------------ARVLVKCGS--------R 151
            R++ S + +++ + ++G   EA                   A VL  CG+        R
Sbjct: 104 DRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRR 163

Query: 152 CDG--------GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
           C G        G   V   N L+  Y + G V +A +LFD +P              N V
Sbjct: 164 CHGLAVKVGLDGHQFVE--NGLLGMYTKCGSVADAVRLFDGMP------------SPNEV 209

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQM----------------------------------- 228
           S+ +M+   A+ G V  A  +F +M                                   
Sbjct: 210 SFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQL 269

Query: 229 ------------LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQ 276
                          D    N+++  Y   + M+EA  +F  +     ++WN +++GY Q
Sbjct: 270 AQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQ 329

Query: 277 IGNLELALD-----------------------------------FFKRMPQKNLVSWNSM 301
           +G  E A++                                    F ++P+ ++ +WN++
Sbjct: 330 LGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTL 389

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
           ++G    + ++  I LF +MQ +  +PDR T + ILS  S + +  LG Q+H    + ++
Sbjct: 390 LSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLL 449

Query: 362 P-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
             D+ + + LI +Y++CG +  A IIF  M   ++VV WN+MI G A H  + EA +  K
Sbjct: 450 HNDMFVASGLIDIYSKCGQVGIALIIF-NMMTERDVVCWNSMISGLAIHSLSEEAFDFLK 508

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            MR   + PT  ++ S+++ CA    + +GRQ    ++ + G +  +    SL+D+  + 
Sbjct: 509 QMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKD-GYDQNVYVGCSLIDMYAKS 567

Query: 481 GRLEDA 486
           G ++DA
Sbjct: 568 GNMDDA 573



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 150/323 (46%), Gaps = 43/323 (13%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
           L  DTF  N ++  Y        A   F  +PHP+  ++NA +S   + G+L  A D   
Sbjct: 41  LAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRAGDLAAARDLLG 100

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
           RMP +N VSWN++IA    +     A++++  M  EG  P   T +S+LS    +  L  
Sbjct: 101 RMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDD 160

Query: 349 GMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G + H +  K  +     + N L+ MY +CG++ +A  +F+ M    N VS+ AM+GG A
Sbjct: 161 GRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMP-SPNEVSFTAMMGGLA 219

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACA-------------------HAGLVE 448
             G   +AL LF  M    +    +   SVL ACA                   HA +V 
Sbjct: 220 QGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVR 279

Query: 449 EG---RQHF-KSMVNEYG----IEPRIEHFASL--VDIV---------GRHGRLEDAMDL 489
           +G    QH   S+V+ Y     ++  I+ F SL  V IV         G+ G  E AM++
Sbjct: 280 KGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEV 339

Query: 490 IKGMP---FEPDKAVWGALLGAC 509
           ++ M    FEP++  +  +L +C
Sbjct: 340 LEFMQESGFEPNEVTYSNMLASC 362


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 200/619 (32%), Positives = 327/619 (52%), Gaps = 64/619 (10%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS-------------------------- 38
           Y K  E   +++LFDE+P+R+VVSWN + S Y+                           
Sbjct: 202 YAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSL 261

Query: 39  ----SRGSGFLEEAR------YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPA 88
               +  +G  + +R      YL  +  + D  + N ++  YAK G++ +A+ +F  +  
Sbjct: 262 SSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQ 321

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV 144
            ++VSWNA+I+G + +     A+E   +M       +  +LS+ +      G L E  R 
Sbjct: 322 PDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMG-LKELGRQ 380

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
           L     + D   DL  +   L+  Y +   +E+AR  F+ +P            ++++++
Sbjct: 381 LHSSLMKMDMESDLFVSVG-LVDMYSKCDLLEDARMAFNLLP------------EKDLIA 427

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDT-FSWNTM------ISGYIHVLDMEEASNLFV 257
           WN++I  Y++  + + A  +F +M +    F+  T+       +G   V    +   L V
Sbjct: 428 WNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSV 487

Query: 258 KMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
           K   H D    N+++  Y +  ++E A   F+     +LVS+ SMI         E A+K
Sbjct: 488 KSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALK 547

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYA 375
           LF++MQ    KPDR   SS+L+  + +     G Q+H  + K   + D+   N+L+ MYA
Sbjct: 548 LFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYA 607

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +CG+I +A   F E+   + +VSW+AMIGG A HG   +AL+LF  M    V P +IT +
Sbjct: 608 KCGSIDDAGRAFSELTE-RGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLV 666

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           SVL AC HAGLV E + +F+SM   +G +P  EH+A ++D++GR G++ +A++L+  MPF
Sbjct: 667 SVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPF 726

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           E + +VWGALLGA R+H +VEL + AAE L  +EPE S  +VLL N+YA  G+W++  EV
Sbjct: 727 EANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEV 786

Query: 556 RLLMKSNNIKKPTGYSWVD 574
           R LM+ + +KK  G SW++
Sbjct: 787 RRLMRDSKVKKEPGMSWIE 805



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 145/539 (26%), Positives = 255/539 (47%), Gaps = 68/539 (12%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +I+ Y+K      A +L +     ++VSW+A+ISG+ QNG    A+  F  M      
Sbjct: 95  NHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVK 154

Query: 124 SLSALVSGLIQNGELDEAARV--LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
                 S +++   + +  R+   V       G E  V   NTL+V Y +     ++++L
Sbjct: 155 CNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRL 214

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWN 237
           FD+IP            +RN+VSWN++  CY +      A  +F +M    ++ + FS +
Sbjct: 215 FDEIP------------ERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLS 262

Query: 238 TMISGYIHVLDMEEAS---NLFVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           +M++    + D           +K+ +  D  + NA+V  YA++G+L  A+  F+++ Q 
Sbjct: 263 SMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQP 322

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           ++VSWN++IAGC  ++ +E A++L  QM+  G  P+  T SS L   +G+    LG Q+H
Sbjct: 323 DIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLH 382

Query: 354 QMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
             + K  +  D+ ++  L+ MY++C  + +AR+ F  +   K++++WNA+I G + +   
Sbjct: 383 SSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLP-EKDLIAWNAIISGYSQYWED 441

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-H--------------FKSM 457
            EAL LF  M    +     T  ++L + A   +V   RQ H                S+
Sbjct: 442 MEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSL 501

Query: 458 VNEYGIEPRIE---------------HFASLVDIVGRHGRLEDAMDL---IKGMPFEPDK 499
           ++ YG    +E                F S++    ++G+ E+A+ L   ++ M  +PD+
Sbjct: 502 IDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDR 561

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMK------VEPENSTPYVLLYNMYADVGRWDDA 552
            V  +LL AC   +  E  +     ++K      +   NS     L NMYA  G  DDA
Sbjct: 562 FVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNS-----LVNMYAKCGSIDDA 615



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 153/590 (25%), Positives = 257/590 (43%), Gaps = 120/590 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           +I+ Y K R    ARKL DE  + D+VSW+ +ISGY  +                     
Sbjct: 97  LINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCN 156

Query: 40  --RGSGFLEEARYLFDIMP-------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
               S  L+    + D+               E D    NT++  YAK  E  ++ RLF+
Sbjct: 157 EFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFD 216

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            +P RNVVSWNA+ S ++Q      A+  F  M          ++SG+  N E   ++ V
Sbjct: 217 EIPERNVVSWNALFSCYVQIDFCGEAVGLFYEM----------VLSGIKPN-EFSLSSMV 265

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
                + C G  D  R    +I GY  +                       + +  +  S
Sbjct: 266 -----NACTGLRDSSRG--KIIHGYLIK-----------------------LGYDWDPFS 295

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH--- 261
            N+++  YAK GD+  A  +FE++ + D  SWN +I+G +     E+A  L  +M     
Sbjct: 296 ANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGI 355

Query: 262 -PDTLTWNAMVSGYAQIGNLELALDF---------------------------------- 286
            P+  T ++ +   A +G  EL                                      
Sbjct: 356 CPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARM 415

Query: 287 -FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F  +P+K+L++WN++I+G     +   A+ LF++M  EG   ++ T S+IL  ++G+  
Sbjct: 416 AFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQV 475

Query: 346 LHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           +H+  Q+H +  K+    D+ + N+LI  Y +C  + +A  IFEE   + ++VS+ +MI 
Sbjct: 476 VHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECT-IGDLVSFTSMIT 534

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
             A +G   EAL+LF  M+  ++ P      S+L+ACA+    E+G+Q     + +YG  
Sbjct: 535 AYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQ-LHVHILKYGFV 593

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
             I    SLV++  + G ++DA      +  E     W A++G    H +
Sbjct: 594 LDIFAGNSLVNMYAKCGSIDDAGRAFSELT-ERGIVSWSAMIGGLAQHGH 642



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 5/186 (2%)

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARII 386
           P   ++S +LS       L  G+QIH  +TK+ + D P I N LI +Y++C     AR +
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
            +E     ++VSW+A+I G A +G    AL  F  M    V     TF SVL AC+    
Sbjct: 114 VDESS-EPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKD 172

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +  G+Q    +V   G E  +    +LV +  +     D+  L   +P E +   W AL 
Sbjct: 173 LRIGKQ-VHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIP-ERNVVSWNALF 230

Query: 507 GACRVH 512
            +C V 
Sbjct: 231 -SCYVQ 235


>gi|414884999|tpg|DAA61013.1| TPA: hypothetical protein ZEAMMB73_343744 [Zea mays]
          Length = 557

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 175/452 (38%), Positives = 267/452 (59%), Gaps = 23/452 (5%)

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           ++L+S  + +G    A R+L     R D        +NTL+  + + G +  AR+LFD++
Sbjct: 125 NSLLSLYLSHGSTASARRLLADI-PRPD-----TVTWNTLLRSFLRMGLLPAARRLFDEM 178

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
           P            +R++V++NSM+  YA  GD+ +ARE+F+ M ERD  +WN+M++GY  
Sbjct: 179 P------------ERDLVTYNSMLSGYAAEGDIANARELFDGMPERDVVTWNSMLAGYAQ 226

Query: 246 VLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
             DME A  LF  MP  D ++WN+M+ GYAQ G++E+    F  MP+++ VSWN ++A  
Sbjct: 227 RGDMESAKRLFDVMPVRDVVSWNSMLDGYAQTGDIEMTRMVFDGMPRRSTVSWNVVLALY 286

Query: 306 ETNKDYEGAIKLF-IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT---VI 361
              KD+   + LF   M V G KP+  TF S+L+    + DL  G  +H +V ++   ++
Sbjct: 287 AKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLERGRWVHHLVHESWERLL 346

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
           PDV +  A++TMYA+CG +  A+ IF+ M   ++V SWN+MI G   HG++ +ALELF  
Sbjct: 347 PDVLLLTAMMTMYAKCGVMGTAKEIFDLMTE-RSVASWNSMIIGYGLHGYSEKALELFME 405

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M      P   TFI +LS+CAH GLV EG   F  MV  Y IEP+ EHF  ++D++GR G
Sbjct: 406 MEKNGPQPNETTFICILSSCAHGGLVLEGWWCFDRMVRFYNIEPKAEHFGCMMDLLGRAG 465

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
            L D+ +LI  +  +   A+WGAL+ A R  ++ +L +     L++++P   + YVLL N
Sbjct: 466 LLRDSENLINNLQAKVSPALWGALISASRTQDSSKLGEFIGTKLIEMKPTEFSSYVLLSN 525

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +YA  GRWDD  +VR +MK   ++K  G S V
Sbjct: 526 IYATEGRWDDVEKVRKVMKEKVVEKDVGMSLV 557



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 160/313 (51%), Gaps = 45/313 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++S Y+     A AR+L  ++P+ D V+WN ++  ++     G L  AR LFD MPERD 
Sbjct: 127 LLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRM---GLLPAARRLFDEMPERDL 183

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           VT+N+++SGYA  G++  A  LF+ MP R+VV+WN+M++G+ Q GD+ +A   FD MP R
Sbjct: 184 VTYNSMLSGYAAEGDIANARELFDGMPERDVVTWNSMLAGYAQRGDMESAKRLFDVMPVR 243

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  S ++++ G  Q G+++    V      R         ++N ++  Y +     E   
Sbjct: 244 DVVSWNSMLDGYAQTGDIEMTRMVFDGMPRRS------TVSWNVVLALYAKVKDWHECLN 297

Query: 181 LFDKIPV----------------------NCDRG--------EGNVRFKRNIVSWNSMIM 210
           LFD +                        + +RG        E   R   +++   +M+ 
Sbjct: 298 LFDAMMAVGGSKPNEKTFVSVLTACGHLGDLERGRWVHHLVHESWERLLPDVLLLTAMMT 357

Query: 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISGY-IHVLDMEEASNLFVKM----PHPDTL 265
            YAK G + +A+EIF+ M ER   SWN+MI GY +H    E+A  LF++M    P P+  
Sbjct: 358 MYAKCGVMGTAKEIFDLMTERSVASWNSMIIGYGLHGYS-EKALELFMEMEKNGPQPNET 416

Query: 266 TWNAMVSGYAQIG 278
           T+  ++S  A  G
Sbjct: 417 TFICILSSCAHGG 429



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 202/446 (45%), Gaps = 70/446 (15%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N+++S Y   G    A RL   +P  + V+WN ++  FL+ G +  A   FD MP RD  
Sbjct: 125 NSLLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGLLPAARRLFDEMPERDLV 184

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDG-GEDLVRAYNTLIVGYGQRGRVEEARKLF 182
           + ++++SG    G++  A  +        DG  E  V  +N+++ GY QRG +E A++LF
Sbjct: 185 TYNSMLSGYAAEGDIANARELF-------DGMPERDVVTWNSMLAGYAQRGDMESAKRLF 237

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
           D +PV            R++VSWNSM+  YA+ GD+   R +F+ M  R T SWN +++ 
Sbjct: 238 DVMPV------------RDVVSWNSMLDGYAQTGDIEMTRMVFDGMPRRSTVSWNVVLAL 285

Query: 243 YIHVLDMEEASNLFVKM-------PH---------------------------------- 261
           Y  V D  E  NLF  M       P+                                  
Sbjct: 286 YAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLERGRWVHHLVHESWERL 345

Query: 262 -PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
            PD L   AM++ YA+ G +  A + F  M ++++ SWNSMI G   +   E A++LF++
Sbjct: 346 LPDVLLLTAMMTMYAKCGVMGTAKEIFDLMTERSVASWNSMIIGYGLHGYSEKALELFME 405

Query: 321 MQVEGEKPDRHTFSSIL-SMSSGIVDLHLGMQIHQMVT-KTVIPDVPINNALITMYARCG 378
           M+  G +P+  TF  IL S + G + L       +MV    + P       ++ +  R G
Sbjct: 406 MEKNGPQPNETTFICILSSCAHGGLVLEGWWCFDRMVRFYNIEPKAEHFGCMMDLLGRAG 465

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT----YITF 434
            + ++  +   ++   +   W A+I   AS    +  L  F   +  ++ PT    Y+  
Sbjct: 466 LLRDSENLINNLQAKVSPALWGALIS--ASRTQDSSKLGEFIGTKLIEMKPTEFSSYVLL 523

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNE 460
            ++ +       VE+ R+  K  V E
Sbjct: 524 SNIYATEGRWDDVEKVRKVMKEKVVE 549


>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
          Length = 614

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 190/563 (33%), Positives = 299/563 (53%), Gaps = 62/563 (11%)

Query: 24  RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEA 79
           +D   WN++I  +  S G      A   F +M E     D  +++ V+   ++ G ++  
Sbjct: 85  KDPFLWNLVIKSH--SHGVD-PRRALLWFCLMLENGISVDKFSFSLVLKACSRLGFLKGG 141

Query: 80  LRLFNSMPARNVVS----WNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN 135
           +++   +    + S     N +I  +L+ G +  A + FDRMP RDS S           
Sbjct: 142 MQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVS----------- 190

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
                                     YN++I GY + G +E AR+LFD +P         
Sbjct: 191 --------------------------YNSMIDGYIKCGLIESARELFDLMP--------- 215

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDTFSWNTMISGYIHVLDMEEASN 254
            R  +N++SWNSMI  YA+  D V+ A ++F +M E+D  SWN++I GY+    ME+A +
Sbjct: 216 -REMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIYGYVKHGRMEDAKD 274

Query: 255 LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
           LF  MP  D +TW  M+ GYA++G +  A   F +MP +++V++NSM+AG   N+ +  A
Sbjct: 275 LFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHHMEA 334

Query: 315 IKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALIT 372
           +++F  M+ E    PD  T   +LS  + +  L   M +H  +V K       +  ALI 
Sbjct: 335 LEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVALID 394

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY++CG+I +A  +FE ++  K++  WNAMIGG A HG    A  +   +    + P YI
Sbjct: 395 MYSKCGSIQQAMCVFEGIEN-KSIDHWNAMIGGLAIHGLGESAFNILLEIERRSIEPDYI 453

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TF+ VL+AC+H+GLV+EG   F+ M  ++ IEPR++H+  +VD++ R G +E A +LI+ 
Sbjct: 454 TFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLSRCGSIELAKNLIEE 513

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
           MP EP+  +W   L AC  H   E+ ++ A+ L+     N + YVLL NMYA  GRW D 
Sbjct: 514 MPIEPNDVIWRTFLTACNHHKEFEIGELVAKHLILQAGYNPSSYVLLSNMYASFGRWKDV 573

Query: 553 NEVRLLMKSNNIKKPTGYSWVDF 575
             VR +MK   ++K  G SW++ 
Sbjct: 574 RNVRTMMKERKLQKVPGCSWIEL 596



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 208/423 (49%), Gaps = 66/423 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--R 58
           +I  Y+K   +  AR++FD MPQRD VS+N MI GYI     G +E AR LFD+MP   +
Sbjct: 163 LIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYIK---CGLIESARELFDLMPREMK 219

Query: 59  DCVTWNTVISGYAKTGE-MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           + ++WN++ISGYA+T + +  A +LF  MP ++++SWN++I G++++G + +A + F  M
Sbjct: 220 NLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIYGYVKHGRMEDAKDLFHVM 279

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P RD  + + ++ G                                     Y + G V +
Sbjct: 280 PRRDVVTWATMIDG-------------------------------------YAKLGFVHK 302

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-----LERD 232
           A+ LFD++P             R++V++NSM+  Y +    + A EIF  M     L  D
Sbjct: 303 AKTLFDQMP------------HRDVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPD 350

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN----AMVSGYAQIGNLELALDFFK 288
             +   ++S    +  + +A ++ + +             A++  Y++ G+++ A+  F+
Sbjct: 351 ETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQQAMCVFE 410

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            +  K++  WN+MI G   +   E A  + ++++    +PD  TF  +L+  S    +  
Sbjct: 411 GIENKSIDHWNAMIGGLAIHGLGESAFNILLEIERRSIEPDYITFVGVLNACSHSGLVKE 470

Query: 349 GMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           G+   +++ +   + P +     ++ + +RCG+I  A+ + EEM +  N V W   +  C
Sbjct: 471 GLLCFELMRRKHKIEPRLQHYGCMVDLLSRCGSIELAKNLIEEMPIEPNDVIWRTFLTAC 530

Query: 407 ASH 409
             H
Sbjct: 531 NHH 533



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 117/260 (45%), Gaps = 22/260 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           MI GY K   + KA+ LFD+MP RDVV++N M++GY+ +R      EA  +F  M +   
Sbjct: 290 MIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHH---MEALEIFSDMEKESH 346

Query: 59  ---DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWN----AMISGFLQNGDVANAI 111
              D  T   V+S  A+ G++ +A+ +   +  +          A+I  + + G +  A+
Sbjct: 347 LTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQQAM 406

Query: 112 EFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
             F+ +  +     +A++ GL  +G  + A  +L++   R    E     +  ++     
Sbjct: 407 CVFEGIENKSIDHWNAMIGGLAIHGLGESAFNILLEIERR--SIEPDYITFVGVLNACSH 464

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LE 230
            G V+E    F+ +           + +  +  +  M+   ++ G +  A+ + E+M +E
Sbjct: 465 SGLVKEGLLCFELM-------RRKHKIEPRLQHYGCMVDLLSRCGSIELAKNLIEEMPIE 517

Query: 231 RDTFSWNTMISGYIHVLDME 250
            +   W T ++   H  + E
Sbjct: 518 PNDVIWRTFLTACNHHKEFE 537


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 190/546 (34%), Positives = 287/546 (52%), Gaps = 70/546 (12%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +I+ Y+         +AR + D MP++D +TW T++ GY + G++  A  +F  +  +
Sbjct: 204 NALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGK 263

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
             V WNAMISG++Q+G  A+A E F RM              + +   LDE     V   
Sbjct: 264 FDVVWNAMISGYVQSGMCADAFELFRRM--------------VSEKVPLDEFTFTSVL-- 307

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
           S C      V   +     +GQ  R++        +PVN                 N+++
Sbjct: 308 SACANAGFFVHGKSV----HGQIIRLQPNFVPEAALPVN-----------------NALV 346

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA 269
             Y+K G +V A+ IF+ M  +D  SWNT++SGYI    +++A  +F  MP+ + L+W  
Sbjct: 347 TLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMV 406

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           MVSGY   G L                               E A+KLF QM+ E  KP 
Sbjct: 407 MVSGYVH-GGLS------------------------------EDALKLFNQMRAEDVKPC 435

Query: 330 RHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFE 388
            +T++  ++    +  L  G Q+H  +V           NAL+TMYA+CGA+ +AR++F 
Sbjct: 436 DYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFL 495

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
            M  L + VSWNAMI     HG   EALELF  M +  + P  I+F+++L+AC HAGLV+
Sbjct: 496 VMPNLDS-VSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVD 554

Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           EG  +F+SM  ++GI P  +H+A L+D++GR GR+ +A DLIK MPFEP  ++W A+L  
Sbjct: 555 EGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSG 614

Query: 509 CRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPT 568
           CR + ++E    AA+ L ++ P++   Y+LL N Y+  GRW DA  VR LM+   +KK  
Sbjct: 615 CRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEP 674

Query: 569 GYSWVD 574
           G SW++
Sbjct: 675 GCSWIE 680



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 183/435 (42%), Gaps = 94/435 (21%)

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
           A  +L+  +   GR+ +A   FD +P            +R+ V  N+M+  +A+A     
Sbjct: 96  AATSLVAAHAAAGRLRDAAAFFDAVPPA----------RRDTVLHNAMMSAFARASLAAP 145

Query: 221 AREIFEQM-----LERDTFSWNTMIS--GYIHVL-------------------------- 247
           A  +F  +     L  D +S+  +IS  G +H L                          
Sbjct: 146 AVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNA 205

Query: 248 --------DMEEAS----NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
                   D  EAS     +  +MP  D LTW  MV GY + G++  A   F+ +  K  
Sbjct: 206 LIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFD 265

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           V WN+MI+G   +     A +LF +M  E    D  TF+S+LS  +       G  +H  
Sbjct: 266 VVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQ 325

Query: 356 VTK---TVIPD--VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA--------- 401
           + +     +P+  +P+NNAL+T+Y++ G IV A+ IF+ M  LK+VVSWN          
Sbjct: 326 IIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMN-LKDVVSWNTILSGYIDSG 384

Query: 402 ----------------------MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
                                 M+ G    G + +AL+LF  MR+  V P   T+   ++
Sbjct: 385 CLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIA 444

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           AC   G ++ GRQ    +V + G E       +L+ +  + G + DA  +   MP   D 
Sbjct: 445 ACGELGALKHGRQLHAHLV-QCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMP-NLDS 502

Query: 500 AVWGALLGACRVHNN 514
             W A++ A   H +
Sbjct: 503 VSWNAMISALGQHGH 517



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 117/482 (24%), Positives = 202/482 (41%), Gaps = 107/482 (22%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           ARK+ DEMP +D ++W  M+ GY+     G +  AR +F+ +  +  V WN +ISGY ++
Sbjct: 222 ARKVLDEMPDKDDLTWTTMVVGYVR---RGDVNAARSVFEEVDGKFDVVWNAMISGYVQS 278

Query: 74  GEMEEALRLF-------------------------------------------NSMPARN 90
           G   +A  LF                                           N +P   
Sbjct: 279 GMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAA 338

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGS 150
           +   NA+++ + + G +  A   FD M  +D  S + ++SG I +G LD+A  V      
Sbjct: 339 LPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPY 398

Query: 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
           + D       ++  ++ GY   G  E+A KLF+++     R E     K    ++   I 
Sbjct: 399 KND------LSWMVMVSGYVHGGLSEDALKLFNQM-----RAED---VKPCDYTYAGAIA 444

Query: 211 CYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT 266
              + G +   R++   ++    E    + N +++ Y     + +A  +F+ MP+ D+++
Sbjct: 445 ACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVS 504

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
           WNAM+S   Q G+                        G E       A++LF QM  EG 
Sbjct: 505 WNAMISALGQHGH------------------------GRE-------ALELFDQMVAEGI 533

Query: 327 KPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVE 382
            PDR +F +IL+    +G+VD   G    + + +   + P       LI +  R G I E
Sbjct: 534 DPDRISFLTILTACNHAGLVD--EGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGE 591

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP----TYITFISVL 438
           AR + + M        W A++ GC ++G        + + + F+++P    TYI   +  
Sbjct: 592 ARDLIKTMPFEPTPSIWEAILSGCRTNG--DMEFGAYAADQLFRMIPQHDGTYILLSNTY 649

Query: 439 SA 440
           SA
Sbjct: 650 SA 651



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 170/393 (43%), Gaps = 91/393 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           M+ GYV+R ++  AR +F+E+  +  V WN MISGY+ S                     
Sbjct: 240 MVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLD 299

Query: 40  -----------RGSGFLEEARYLF--------DIMPERDCVTWNTVISGYAKTGEMEEAL 80
                        +GF    + +         + +PE      N +++ Y+K G++  A 
Sbjct: 300 EFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAK 359

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
           R+F++M  ++VVSWN ++SG++ +G +  A+E F  MP ++  S   +VSG +  G  ++
Sbjct: 360 RIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSED 419

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A ++  +   R +  +     Y   I   G+ G ++  R+L   + V C        F+ 
Sbjct: 420 ALKLFNQ--MRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHL-VQCG-------FEA 469

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           +  + N+++  YAK G V  AR +F  M   D+ SWN MIS         EA  LF +M 
Sbjct: 470 SNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMV 529

Query: 261 ----HPDTLTWNAMVSG-----------------------------YAQI-------GNL 280
                PD +++  +++                              YA++       G +
Sbjct: 530 AEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRI 589

Query: 281 ELALDFFKRMPQKNLVS-WNSMIAGCETNKDYE 312
             A D  K MP +   S W ++++GC TN D E
Sbjct: 590 GEARDLIKTMPFEPTPSIWEAILSGCRTNGDME 622



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 179/414 (43%), Gaps = 52/414 (12%)

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL--DMEEASNLFVKMPHPDTLTWNA 269
           + +A   + AR +   +L   +    T+   +++ L  D+   + LF   P P  +   +
Sbjct: 40  FLRALRCLHARLLTADLLHAPSHPHLTLRLIHLYTLSPDLATPAALFRSDPDPGPVAATS 99

Query: 270 MVSGYAQIGNLELALDFFKRMP--QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE- 326
           +V+ +A  G L  A  FF  +P  +++ V  N+M++          A+ +F  +   G  
Sbjct: 100 LVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSL 159

Query: 327 KPDRHTFSSILSMSSGIVDLHLG--MQIHQMVTKTVIPDV-PINNALITMYARC------ 377
           +PD ++F++++S    + +L      Q+H  V K+    V  ++NALI +Y +C      
Sbjct: 160 RPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEAS 219

Query: 378 ----------------------------GAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
                                       G +  AR +FEE+    +VV WNAMI G    
Sbjct: 220 WDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVV-WNAMISGYVQS 278

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN---EYGIEPR 466
           G   +A ELF+ M S KV     TF SVLSACA+AG    G+     ++     +  E  
Sbjct: 279 GMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAA 338

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM 526
           +    +LV +  + G++  A  +   M  + D   W  +L     + +      A E   
Sbjct: 339 LPVNNALVTLYSKGGKIVIAKRIFDTMNLK-DVVSWNTILSG---YIDSGCLDKAVEVFK 394

Query: 527 KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD-FSPCG 579
            +  +N   ++++ + Y   G  +DA ++   M++ ++ KP  Y++    + CG
Sbjct: 395 VMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDV-KPCDYTYAGAIAACG 447


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 190/546 (34%), Positives = 286/546 (52%), Gaps = 70/546 (12%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +I+ Y+         +AR + D MP++D +TW T++ GY + G++  A  +F  +  +
Sbjct: 202 NALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGK 261

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
             V WNAMISG++Q+G  A+A E F RM              + +   LDE     V   
Sbjct: 262 FDVVWNAMISGYVQSGMCADAFELFRRM--------------VSEKVPLDEFTFTSVL-- 305

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
           S C      V   +     +GQ  R++        +PVN                 N+++
Sbjct: 306 SACANAGFFVHGKSV----HGQIIRLQPNFVPEAALPVN-----------------NALV 344

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA 269
             Y+K G +V A+ IF+ M  +D  SWNT++SGYI    +++A  +F  MP+ + L+W  
Sbjct: 345 TLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMV 404

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           MVSGY   G  E AL                               KLF QM+ E  KP 
Sbjct: 405 MVSGYVHGGLSEDAL-------------------------------KLFNQMRAEDVKPC 433

Query: 330 RHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFE 388
            +T++  ++    +  L  G Q+H  +V           NAL+TMYA+CGA+ +AR++F 
Sbjct: 434 DYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFL 493

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
            M  L + VSWNAMI     HG   EALELF  M +  + P  I+F+++L+AC HAGLV+
Sbjct: 494 VMPNLDS-VSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVD 552

Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           EG  +F+SM  ++GI P  +H+A L+D++GR GR+ +A DLIK MPFEP  ++W A+L  
Sbjct: 553 EGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSG 612

Query: 509 CRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPT 568
           CR + ++E    AA+ L ++ P++   Y+LL N Y+  GRW DA  VR LM+   +KK  
Sbjct: 613 CRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEP 672

Query: 569 GYSWVD 574
           G SW++
Sbjct: 673 GCSWIE 678



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 181/433 (41%), Gaps = 94/433 (21%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
            +L+      GR+ +A   FD +P            +R+ V  N+M+  +A+A     A 
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAVPPA----------RRDTVLHNAMMSAFARASLAAPAV 145

Query: 223 EIFEQM-----LERDTFSWNTMIS--GYIHVL---------------------------- 247
            +F  +     L  D +S+  +IS  G +H L                            
Sbjct: 146 SVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALI 205

Query: 248 ------DMEEAS----NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
                 D  EAS     +  +MP  D LTW  MV GY + G++  A   F+ +  K  V 
Sbjct: 206 ALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVV 265

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WN+MI+G   +     A +LF +M  E    D  TF+S+LS  +       G  +H  + 
Sbjct: 266 WNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQII 325

Query: 358 K---TVIPD--VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA----------- 401
           +     +P+  +P+NNAL+T+Y++ G IV A+ IF+ M  LK+VVSWN            
Sbjct: 326 RLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMN-LKDVVSWNTILSGYIDSGCL 384

Query: 402 --------------------MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
                               M+ G    G + +AL+LF  MR+  V P   T+   ++AC
Sbjct: 385 DKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAAC 444

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
              G ++ GRQ    +V + G E       +L+ +  + G + DA  +   MP   D   
Sbjct: 445 GELGALKHGRQLHAHLV-QCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMP-NLDSVS 502

Query: 502 WGALLGACRVHNN 514
           W A++ A   H +
Sbjct: 503 WNAMISALGQHGH 515



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 117/482 (24%), Positives = 202/482 (41%), Gaps = 107/482 (22%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           ARK+ DEMP +D ++W  M+ GY+     G +  AR +F+ +  +  V WN +ISGY ++
Sbjct: 220 ARKVLDEMPDKDDLTWTTMVVGYVR---RGDVNAARSVFEEVDGKFDVVWNAMISGYVQS 276

Query: 74  GEMEEALRLF-------------------------------------------NSMPARN 90
           G   +A  LF                                           N +P   
Sbjct: 277 GMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAA 336

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGS 150
           +   NA+++ + + G +  A   FD M  +D  S + ++SG I +G LD+A  V      
Sbjct: 337 LPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPY 396

Query: 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
           + D       ++  ++ GY   G  E+A KLF+++     R E     K    ++   I 
Sbjct: 397 KND------LSWMVMVSGYVHGGLSEDALKLFNQM-----RAE---DVKPCDYTYAGAIA 442

Query: 211 CYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT 266
              + G +   R++   ++    E    + N +++ Y     + +A  +F+ MP+ D+++
Sbjct: 443 ACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVS 502

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
           WNAM+S   Q G+                        G E       A++LF QM  EG 
Sbjct: 503 WNAMISALGQHGH------------------------GRE-------ALELFDQMVAEGI 531

Query: 327 KPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVE 382
            PDR +F +IL+    +G+VD   G    + + +   + P       LI +  R G I E
Sbjct: 532 DPDRISFLTILTACNHAGLVD--EGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGE 589

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP----TYITFISVL 438
           AR + + M        W A++ GC ++G        + + + F+++P    TYI   +  
Sbjct: 590 ARDLIKTMPFEPTPSIWEAILSGCRTNG--DMEFGAYAADQLFRMIPQHDGTYILLSNTY 647

Query: 439 SA 440
           SA
Sbjct: 648 SA 649



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 170/393 (43%), Gaps = 91/393 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           M+ GYV+R ++  AR +F+E+  +  V WN MISGY+ S                     
Sbjct: 238 MVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLD 297

Query: 40  -----------RGSGFLEEARYLF--------DIMPERDCVTWNTVISGYAKTGEMEEAL 80
                        +GF    + +         + +PE      N +++ Y+K G++  A 
Sbjct: 298 EFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAK 357

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
           R+F++M  ++VVSWN ++SG++ +G +  A+E F  MP ++  S   +VSG +  G  ++
Sbjct: 358 RIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSED 417

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A ++  +   R +  +     Y   I   G+ G ++  R+L   + V C        F+ 
Sbjct: 418 ALKLFNQM--RAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHL-VQCG-------FEA 467

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           +  + N+++  YAK G V  AR +F  M   D+ SWN MIS         EA  LF +M 
Sbjct: 468 SNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMV 527

Query: 261 ----HPDTLTWNAMVSG-----------------------------YAQI-------GNL 280
                PD +++  +++                              YA++       G +
Sbjct: 528 AEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRI 587

Query: 281 ELALDFFKRMPQKNLVS-WNSMIAGCETNKDYE 312
             A D  K MP +   S W ++++GC TN D E
Sbjct: 588 GEARDLIKTMPFEPTPSIWEAILSGCRTNGDME 620


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 200/552 (36%), Positives = 290/552 (52%), Gaps = 66/552 (11%)

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLS 126
           A +G++  A  +FN +   N   WN MI G+        A  FF  M       DS S  
Sbjct: 202 AHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFV 261

Query: 127 ALVSGLIQNGELDEAARVLV---KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
             +    Q   + E   V     K G  C   E LVR  N LI  Y +RG ++ AR++FD
Sbjct: 262 FALKACQQFETVFEGESVYCVVWKMGFDC---ELLVR--NGLIHFYAERGLLKNARQVFD 316

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML-------------- 229
           +               +++V+W +MI  YA       A E+FE ML              
Sbjct: 317 ESS------------DKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAV 364

Query: 230 ------------------------ERDTFSW-NTMISGYIHVLDMEEASNLFVKMPHPDT 264
                                    R + S  N ++  Y+    + +A  LF +M   D 
Sbjct: 365 VSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDV 424

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
            +W +MV+GYA+ G+LE A  FF + P+KN V W++MIAG   N   + ++KLF +M   
Sbjct: 425 YSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMER 484

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIP-DVPINNALITMYARCGAIVE 382
           G  P  HT  S+LS    +  L+LG  IHQ  V   +IP  V + NA++ MYA+CG+I  
Sbjct: 485 GVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDA 544

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           A  +F  M   +N++SWN MI G A++G A +A+ +F  MR+    P  ITF+S+L+AC+
Sbjct: 545 ATEVFSTMPE-RNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACS 603

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
           H GL+ EGR++F +M  +YGI+P   H+A +VD++GR G LE+A  LI  MP +P +A W
Sbjct: 604 HGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAW 663

Query: 503 GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
           GALL ACR+H NVELA+++A  L++++PE+S  YVLL N  A+  +W D   VR LMK  
Sbjct: 664 GALLNACRMHGNVELARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDK 723

Query: 563 NIKKPTGYSWVD 574
            +KK  GYS ++
Sbjct: 724 GVKKIPGYSLIE 735



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/486 (25%), Positives = 207/486 (42%), Gaps = 102/486 (20%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGF-LEEARYLFDIMPERD--------- 59
           ++  A  +F+ + Q +   WN MI GY ++R   F      Y+F +  E D         
Sbjct: 206 DLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALK 265

Query: 60  ---------------CVTW-----------NTVISGYAKTGEMEEALRLFNSMPARNVVS 93
                          CV W           N +I  YA+ G ++ A ++F+    ++VV+
Sbjct: 266 ACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVT 325

Query: 94  WNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDEAARVLVKC- 148
           W  MI G+  +     A+E F+ M       +  +L A+VS     G L+   RV  K  
Sbjct: 326 WTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVE 385

Query: 149 --GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
               RC      +  +N L+  Y +   + +AR+LFD++              +++ SW 
Sbjct: 386 EKNMRCS-----LSLHNALLDMYVKCDCLVDARELFDRMAT------------KDVYSWT 428

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------P 260
           SM+  YAK GD+ SAR  F+Q   ++   W+ MI+GY      +E+  LF +M      P
Sbjct: 429 SMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVP 488

Query: 261 HPDTLT----------------W------------------NAMVSGYAQIGNLELALDF 286
              TL                 W                  NA+V  YA+ G+++ A + 
Sbjct: 489 IEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEV 548

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F  MP++NL+SWN+MIAG   N   + AI +F QM+  G +P+  TF S+L+  S    +
Sbjct: 549 FSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLI 608

Query: 347 HLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
             G +    + +   + P+      ++ +  R G + EA  +   M +     +W A++ 
Sbjct: 609 SEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLN 668

Query: 405 GCASHG 410
            C  HG
Sbjct: 669 ACRMHG 674



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 165/397 (41%), Gaps = 98/397 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           +I  Y +R  +  AR++FDE   +DVV+W  MI GY +   S   EEA  +F++M     
Sbjct: 298 LIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCS---EEAMEVFELMLLSHV 354

Query: 57  ERDCVTWNTVISGYAKTGEME-----------------------------------EALR 81
           E + VT   V+S  +  G +E                                   +A  
Sbjct: 355 EPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARE 414

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           LF+ M  ++V SW +M++G+ + GD+ +A  FFD+ P +++   SA+++G  QN +  E+
Sbjct: 415 LFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKES 474

Query: 142 AR-------------------VLVKCGS-RCDGGEDLVRAY--------------NTLIV 167
            +                   VL  CG   C    D +  Y              N ++ 
Sbjct: 475 LKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVD 534

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y + G ++ A ++F  +P            +RN++SWN+MI  YA  G    A  +F+Q
Sbjct: 535 MYAKCGSIDAATEVFSTMP------------ERNLISWNTMIAGYAANGRAKQAINVFDQ 582

Query: 228 M----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIG 278
           M     E +  ++ ++++   H   + E    F  M       P+   +  MV    + G
Sbjct: 583 MRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTG 642

Query: 279 NLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
            LE A      MP Q    +W +++  C  + + E A
Sbjct: 643 LLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELA 679


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 190/592 (32%), Positives = 316/592 (53%), Gaps = 33/592 (5%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS-GFLEEAR----YLFDIM 55
           +ISG+ +      A ++FDEM    +    V ++  +++  S G L++ +    YL    
Sbjct: 216 LISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAG 275

Query: 56  PERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
              D +T  +++  Y K G++E A  +FN     NVV WN M+  + Q  D+A + E F 
Sbjct: 276 MSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFG 335

Query: 116 RMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
           +M       +  +   ++      G+++   ++     S  +G E  +     LI  Y +
Sbjct: 336 QMQATGIHPNQFTYPCILRTCTCTGQIELGEQI--HSLSIKNGFESDMYVSGVLIDMYSK 393

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE- 230
            G +++ARK+ + +             KR++VSW SMI  Y +      A   F++M + 
Sbjct: 394 YGCLDKARKILEMLE------------KRDVVSWTSMIAGYVQHDFCEEALATFKEMQDC 441

Query: 231 ---RDTFSWNTMISGYIHVLDMEEA----SNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
               D     +  S    +  M +     + ++V     D   WN +V+ YA+ G  E A
Sbjct: 442 GVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEA 501

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F+ +  K+ ++WN +I+G   ++ Y+ A+ +F++M   G K +  TF S +S  + +
Sbjct: 502 FSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANL 561

Query: 344 VDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
            D+  G Q+H    KT    +  + NALI++Y +CG+I +A++IF EM L +N VSWN +
Sbjct: 562 ADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSL-RNEVSWNTI 620

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I  C+ HG   EAL+LF  M+   + P  +TFI VL+AC+H GLVEEG  +FKSM N YG
Sbjct: 621 ITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYG 680

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           + P  +H+A +VDI+GR G+L+ A   +  MP   +  +W  LL AC+VH N+E+ ++AA
Sbjct: 681 LNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAA 740

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + L+++EP +S  YVLL N YA  G+W + ++VR +MK   I+K  G SW++
Sbjct: 741 KHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIE 792



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 222/462 (48%), Gaps = 42/462 (9%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------ 117
           N +I  YAK G + +A ++F  + +R+ VSW AM+SG+ Q+G    A   + +M      
Sbjct: 82  NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVI 141

Query: 118 --PGRDSASLSALVSG-LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
             P   S+ LSA   G L   G +  A    V   + C   E  V   N LI  Y   G 
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQ---VYKQAFCS--ETFVG--NALIALYLGFGS 194

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LE 230
            + A ++F  + + CDR           V++N++I  +A+ G    A +IF++M    L 
Sbjct: 195 FKLAERVFCDM-LFCDR-----------VTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDF 286
            D  +  ++++    V D+++   L   +       D +T  +++  Y + G++E A D 
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F    + N+V WN M+       D   + ++F QMQ  G  P++ T+  IL   +    +
Sbjct: 303 FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQI 362

Query: 347 HLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
            LG QIH +  K     D+ ++  LI MY++ G + +AR I E ++  ++VVSW +MI G
Sbjct: 363 ELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLE-KRDVVSWTSMIAG 421

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIE 464
              H F  EAL  FK M+   V P  I   S  SACA    + +G Q H +  V+ Y  +
Sbjct: 422 YVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             I  + +LV++  R GR E+A  L + +  + D+  W  L+
Sbjct: 482 ISI--WNTLVNLYARCGRSEEAFSLFREIEHK-DEITWNGLI 520



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 161/353 (45%), Gaps = 43/353 (12%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------ 259
           N +I  YAK G V  AR++F+++  RD  SW  M+SGY      +EA  L+ +M      
Sbjct: 82  NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVI 141

Query: 260 PHP---------------------------------DTLTWNAMVSGYAQIGNLELALDF 286
           P P                                 +T   NA+++ Y   G+ +LA   
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERV 201

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F  M   + V++N++I+G       E A+++F +MQ+ G +PD  T +S+L+  + + DL
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261

Query: 347 HLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             G Q+H  + K  +  D     +L+ +Y +CG I  A  IF  +    NVV WN M+  
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF-NLGDRTNVVLWNLMLVA 320

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
                   ++ E+F  M++  + P   T+  +L  C   G +E G Q   S+  + G E 
Sbjct: 321 YGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQ-IHSLSIKNGFES 379

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            +     L+D+  ++G L+ A  +++ M  + D   W +++     H+  E A
Sbjct: 380 DMYVSGVLIDMYSKYGCLDKARKILE-MLEKRDVVSWTSMIAGYVQHDFCEEA 431


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 206/655 (31%), Positives = 327/655 (49%), Gaps = 98/655 (14%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           +  +++R ++  ARKLFDEMP ++V+S N MI GY+    SG L  AR LFD M +R  V
Sbjct: 49  VQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLK---SGNLSTARSLFDSMVQRSVV 105

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVV----SWNAMISGFLQ----------NGDV 107
           TW  +I GYA+     EA  LF  M    +V    +   ++SGF +          +G V
Sbjct: 106 TWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHV 165

Query: 108 AN-------------------------AIEFFDRMPGRDSASLSALVSGLIQNGELDEAA 142
                                      A   F  M  +D+ + +AL++G  + G   +A 
Sbjct: 166 VKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAI 225

Query: 143 RVLVK------------------CGSRCDG---GEDL------------VRAYNTLIVGY 169
            +  K                   G + D    G+ +            V   N L+  Y
Sbjct: 226 NLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFY 285

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM- 228
            +  R+ EARKLF ++P            + + +S+N +I C A  G V  + E+F ++ 
Sbjct: 286 SKHDRIVEARKLFYEMP------------EVDGISYNVLITCCAWNGRVEESLELFRELQ 333

Query: 229 ---LERDTFSWNTMISGYIHVLDMEEA----SNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
               +R  F + T++S   + L++E      S   V     + L  N++V  YA+     
Sbjct: 334 FTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFG 393

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A   F  +  ++ V W ++I+G      +E  +KLF++M       D  T++SIL   +
Sbjct: 394 EANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACA 453

Query: 342 GIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +  L LG Q+H  + ++  + +V   +AL+ MYA+CG+I EA  +F+EM  ++N VSWN
Sbjct: 454 NLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMP-VRNSVSWN 512

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           A+I   A +G    AL  F+ M    + P  ++F+S+L AC+H GLVEEG Q+F SM   
Sbjct: 513 ALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQV 572

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           Y +EPR EH+AS+VD++ R GR ++A  L+  MPFEPD+ +W ++L +CR+H N ELA  
Sbjct: 573 YKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIK 632

Query: 521 AAEALMKVEP-ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           AA+ L  ++   ++ PYV + N+YA  G WD   +V+  ++   I+K   YSWV+
Sbjct: 633 AADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVE 687



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 215/489 (43%), Gaps = 82/489 (16%)

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
           N   +N  +   LQ GD+  A + FD MP ++  S + ++ G +++G L  A  +     
Sbjct: 41  NTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMV 100

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG----------------- 192
            R       V  +  LI GY Q  R  EA  LF  +   C  G                 
Sbjct: 101 QRS------VVTWTMLIGGYAQHNRFLEAFNLFADM---CRHGMVPDHITLATLLSGFTE 151

Query: 193 ----------EGN---VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
                      G+   V +   ++  NS++  Y K   +  A  +F+ M E+D  ++N +
Sbjct: 152 FESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNAL 211

Query: 240 ISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELA------------ 283
           ++GY       +A NLF KM      P   T+ A+++   Q+ ++E              
Sbjct: 212 LTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNF 271

Query: 284 ----------LDFFKR-------------MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                     LDF+ +             MP+ + +S+N +I  C  N   E +++LF +
Sbjct: 272 VWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRE 331

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGA 379
           +Q       +  F+++LS+++  ++L +G QIH Q +    I +V + N+L+ MYA+C  
Sbjct: 332 LQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDK 391

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
             EA  IF ++   ++ V W A+I G    G   + L+LF  M   K+     T+ S+L 
Sbjct: 392 FGEANRIFADLA-HQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILR 450

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           ACA+   +  G+Q   S +   G    +   ++LVD+  + G +++A+ + + MP   + 
Sbjct: 451 ACANLASLTLGKQ-LHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVR-NS 508

Query: 500 AVWGALLGA 508
             W AL+ A
Sbjct: 509 VSWNALISA 517



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 142/291 (48%), Gaps = 8/291 (2%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           +T  +N  +  ++   D+  A  LF +MPH + ++ N M+ GY + GNL  A   F  M 
Sbjct: 41  NTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMV 100

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           Q+++V+W  +I G   +  +  A  LF  M   G  PD  T +++LS  +    ++   Q
Sbjct: 101 QRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQ 160

Query: 352 IHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +H  V K      + + N+L+  Y +  ++  A  +F+ M   K+ V++NA++ G +  G
Sbjct: 161 VHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMA-EKDNVTFNALLTGYSKEG 219

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
           F  +A+ LF  M+     P+  TF +VL+A      +E G+Q   S V +      +   
Sbjct: 220 FNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQ-VHSFVVKCNFVWNVFVA 278

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC----RVHNNVEL 517
            +L+D   +H R+ +A  L   MP E D   +  L+  C    RV  ++EL
Sbjct: 279 NALLDFYSKHDRIVEARKLFYEMP-EVDGISYNVLITCCAWNGRVEESLEL 328


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 190/529 (35%), Positives = 292/529 (55%), Gaps = 38/529 (7%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMP--ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR- 120
           NT++  YAK G +   L LFN+ P  + NVV+W  +I+   ++     A+ FF+RM    
Sbjct: 136 NTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTG 195

Query: 121 ---DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
              +  + SA++        L E  ++       C   +  V     L+  Y + G +  
Sbjct: 196 IYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVAT--ALLDMYAKCGSMLL 253

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER--DTFS 235
           A  +FD++P             RN+VSWNSMI+ + K      A  +F ++L    D  S
Sbjct: 254 AENVFDEMP------------HRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLGPDQVS 301

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTL---------TWNAMVSGYAQIGNLELALDF 286
            ++++S    +++++     F K  H   +           N++V  Y + G  E A   
Sbjct: 302 ISSVLSACAGLVELD-----FGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKL 356

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F     +++V+WN MI GC   +++E A   F  M  EG +PD  ++SS+   S+ I  L
Sbjct: 357 FCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAAL 416

Query: 347 HLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             G  IH  V KT  + +  I+++L+TMY +CG++++A  +F E K   NVV W AMI  
Sbjct: 417 TQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKE-HNVVCWTAMITV 475

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
              HG A EA++LF+ M +  V+P YITF+SVLSAC+H G +++G ++F SM N + I+P
Sbjct: 476 FHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKP 535

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
            +EH+A +VD++GR GRLE+A   I+ MPFEPD  VWGALLGAC  H NVE+ +  AE L
Sbjct: 536 GLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERL 595

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            K+EP+N   Y+LL N+Y   G  ++A+EVR LM  N ++K +G SW+D
Sbjct: 596 FKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWID 644



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 170/400 (42%), Gaps = 75/400 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-FLEEARYLFDIMPERD 59
           ++  Y K   M  A  +FDEMP R++VSWN MI G++ ++  G  +   R +  + P++ 
Sbjct: 241 LLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLGPDQV 300

Query: 60  CVTW---------------------------------NTVISGYAKTGEMEEALRLFNSM 86
            ++                                  N+++  Y K G  E+A +LF   
Sbjct: 301 SISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGG 360

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAA 142
             R+VV+WN MI G  +  +   A  +F  M       D AS S+L         L +  
Sbjct: 361 GDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGT 420

Query: 143 RV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
            +   ++K G   +      R  ++L+  YG+ G + +A ++F +              +
Sbjct: 421 MIHSHVLKTGHVKNS-----RISSSLVTMYGKCGSMLDAYQVFRETK------------E 463

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNL 255
            N+V W +MI  + + G    A ++FE+ML      +  ++ +++S   H   +++    
Sbjct: 464 HNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKY 523

Query: 256 FVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNK 309
           F  M +     P    +  MV    ++G LE A  F + MP + + + W +++  C  + 
Sbjct: 524 FNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHA 583

Query: 310 DYEG----AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
           + E     A +LF   ++E + P  +   S + +  G+++
Sbjct: 584 NVEMGREVAERLF---KLEPDNPGNYMLLSNIYIRHGMLE 620



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 15/190 (7%)

Query: 315 IKLFIQMQVEGEKPDRHTFSSI------LSMSSGIVDLHLGMQIH-QMVTKTVIPDVPIN 367
           ++LF   Q     P  H FSS+      L+ ++ +  L    QIH Q+VT      +   
Sbjct: 78  LQLFTSYQ--SGVPKFHQFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANI 135

Query: 368 NALITMYARCGAIVEARIIFEEM-KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
           N L+ +YA+CG+I    ++F        NVV+W  +I   +      +AL  F  MR+  
Sbjct: 136 NTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTG 195

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI--EPRIEHFASLVDIVGRHGRLE 484
           + P + TF ++L ACAHA L+ EG+Q   ++++++    +P +    +L+D+  + G + 
Sbjct: 196 IYPNHFTFSAILPACAHAALLSEGQQ-IHALIHKHCFLNDPFVA--TALLDMYAKCGSML 252

Query: 485 DAMDLIKGMP 494
            A ++   MP
Sbjct: 253 LAENVFDEMP 262


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 196/603 (32%), Positives = 315/603 (52%), Gaps = 78/603 (12%)

Query: 43  GFLEEARYLFDIMP--ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISG 100
           G   EAR LFD +P   R+  TWN+++S YAK+G + +A  +F  MP R+ VSW  MI G
Sbjct: 262 GCFREARCLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVG 321

Query: 101 FLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV-------LVKCG-SRC 152
             ++G   +A++ F  M     A     ++ ++ +    EA  V       +VK G S C
Sbjct: 322 LNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSC 381

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC--------------DRGEGNVRF 198
                 V   N+++  YG+ G  E AR +F+++ V                 R E  V  
Sbjct: 382 ------VPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSM 435

Query: 199 -----KRNIVSWNSMIMCYAKAGDVVSAREIFEQML-----ERDTFS------------- 235
                +R+IVSWN++I  Y + G    A + F +ML     E D F+             
Sbjct: 436 FENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRM 495

Query: 236 ----------------------WNTMISGYIHVLDMEEASNLFVKMPHPD--TLTWNAMV 271
                                  N +IS Y     +E A  +  +    D   +++ A++
Sbjct: 496 LKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALL 555

Query: 272 SGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
            GY ++G+ + A + F  M  +++++W +MI G   N   + A++LF  M + G +P+ H
Sbjct: 556 EGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSH 615

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEM 390
           T +++LS  + +  L  G QIH    +++    V ++NA+IT+YAR G++  AR +F+++
Sbjct: 616 TLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQI 675

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
              K  ++W +MI   A HG   +A+ LF+ M    V P +IT++ VLSACAHAG V++G
Sbjct: 676 CWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKG 735

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
           +++++ M NE+GI P++ H+A +VD+  R G L +A + I+ MP  PD  VWG+LL ACR
Sbjct: 736 KRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACR 795

Query: 511 VHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGY 570
           V  N +LA++AA  L+ ++P NS  Y  L N+Y+  GRW+DA  +  L K   +KK TG+
Sbjct: 796 VRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGF 855

Query: 571 SWV 573
           SW 
Sbjct: 856 SWT 858



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 130/522 (24%), Positives = 209/522 (40%), Gaps = 130/522 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           ++S Y K   +  A  +F EMP RD VSW +MI G   +R   F +  +   D++ E   
Sbjct: 287 LLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGL--NRSGRFWDAVKTFLDMVSEGFA 344

Query: 58  ----------------------------------RDCV-TWNTVISGYAKTGEMEEALRL 82
                                               CV   N+V+  Y K G+ E A  +
Sbjct: 345 PSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAV 404

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG------ 136
           F  M  R+V SWN M+S +   G +  A+  F+ M  R   S + +++G  QNG      
Sbjct: 405 FERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMAL 464

Query: 137 ----------ELDEAARVLVKCGSRCDGGEDL-----VRAY-------------NTLIVG 168
                      ++  A  +    S C     L     + +Y             N LI  
Sbjct: 465 KFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALIST 524

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y + G VE AR++ D+  V             N++S+ +++  Y K GD   AREIF+ M
Sbjct: 525 YAKSGSVETARRIMDQAVVA----------DLNVISFTALLEGYVKLGDTKQAREIFDIM 574

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW----------------- 267
             RD  +W  MI GY      +EA  LF  M    P P++ T                  
Sbjct: 575 NNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGK 634

Query: 268 ------------------NAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETN 308
                             NA+++ YA+ G++ LA   F ++  +K  ++W SMI     +
Sbjct: 635 QIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQH 694

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKT--VIPDV 364
              E A+ LF +M   G KPD  T+  +LS    +G VD   G + ++ +     ++P +
Sbjct: 695 GLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVD--KGKRYYEQMQNEHGIVPQM 752

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
                ++ ++AR G + EA    + M +  + V W +++  C
Sbjct: 753 SHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAAC 794



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 131/503 (26%), Positives = 208/503 (41%), Gaps = 126/503 (25%)

Query: 158 LVRAY--NTLIVGYGQ----RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
           LV  Y  N L+  Y      RG   EAR LFD IP            +RN  +WNS++  
Sbjct: 241 LVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYA----------RRNAFTWNSLLSL 290

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTL 265
           YAK+G +  A  +F +M +RD  SW  MI G        +A   F+ M      P   TL
Sbjct: 291 YAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTL 350

Query: 266 T---------------------------------WNAMVSGYAQIGNLELALDFFKRMP- 291
           T                                  N+++  Y + G+ E A   F+RM  
Sbjct: 351 TNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQV 410

Query: 292 ------------------------------QKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
                                         ++++VSWN++IAG   N     A+K F +M
Sbjct: 411 RSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRM 470

Query: 322 -QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGA 379
                 +PD  T +S+LS  + +  L +G Q+H  + +T +P    I NALI+ YA+ G+
Sbjct: 471 LSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGS 530

Query: 380 IVEARIIFEE-----------MKLL---------------------KNVVSWNAMIGGCA 407
           +  AR I ++             LL                     ++V++W AMI G  
Sbjct: 531 VETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYH 590

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPR 466
            +G   EA+ELF+SM      P   T  +VLSACA    ++ G+Q H K++ +    E  
Sbjct: 591 QNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQ--EQS 648

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM 526
           +    +++ +  R G +  A  +   + +  +   W +++ A   H   E A V  E ++
Sbjct: 649 VSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMV 708

Query: 527 K--VEPENSTPYVLLYNMYADVG 547
           +  V+P++ T YV + +  A  G
Sbjct: 709 RVGVKPDHIT-YVGVLSACAHAG 730



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 143/310 (46%), Gaps = 40/310 (12%)

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVL----DMEEASNLFVKMPHP--DTLTWN 268
           AG  + A  +   +L   T+  N +++ Y  V        EA  LF  +P+   +  TWN
Sbjct: 227 AGRAIHAHAVKAGLLV-STYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWN 285

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           +++S YA+ G L  A   F  MP ++ VSW  MI G   +  +  A+K F+ M  EG  P
Sbjct: 286 SLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAP 345

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIF 387
            + T +++LS  + +    +G ++H  V K  +   VP+ N+++ MY +CG    AR +F
Sbjct: 346 SQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVF 405

Query: 388 EEMKLL------------------------------KNVVSWNAMIGGCASHGFATEALE 417
           E M++                               +++VSWN +I G   +G    AL+
Sbjct: 406 ERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALK 465

Query: 418 LFKSMRSFKVL-PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
            F  M S   + P   T  SVLSACA+  +++ G+Q   S +   G+    +   +L+  
Sbjct: 466 FFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQ-MHSYILRTGMPCSSQIMNALIST 524

Query: 477 VGRHGRLEDA 486
             + G +E A
Sbjct: 525 YAKSGSVETA 534



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 145/309 (46%), Gaps = 27/309 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           ++ GYVK  +  +AR++FD M  RDV++W  MI GY     +G  +EA  LF  M    P
Sbjct: 554 LLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGY---HQNGQNDEAMELFRSMILIGP 610

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRL----FNSMPARNVVSWNAMISGFLQNGDVANAIE 112
           E +  T   V+S  A    ++   ++      S+  ++V   NA+I+ + ++G V  A  
Sbjct: 611 EPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARR 670

Query: 113 FFDRMPGR-DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
            FD++  R ++ + ++++  + Q+G L E A VL +   R     D +  Y  ++     
Sbjct: 671 VFDQICWRKETITWTSMIVAMAQHG-LGEQAVVLFEEMVRVGVKPDHI-TYVGVLSACAH 728

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LE 230
            G V++ ++ ++++       +        +  +  M+  +A+AG +  A E  ++M + 
Sbjct: 729 AGFVDKGKRYYEQM-------QNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVA 781

Query: 231 RDTFSWNTMISG--YIHVLDMEE--ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
            DT  W ++++        D+ E  A  L    PH ++  ++A+ + Y+  G    A   
Sbjct: 782 PDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPH-NSGAYSALANVYSACGRWNDAARI 840

Query: 287 FKRMPQKNL 295
           +K    K +
Sbjct: 841 WKLRKDKGV 849


>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
          Length = 799

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 195/657 (29%), Positives = 325/657 (49%), Gaps = 95/657 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           M++ Y    +++ A  LFD MP  DVVSWN ++SGY      G  +E+  LF       +
Sbjct: 89  MLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQR---GMFQESVDLFVEMARRGV 145

Query: 55  MPER---------------------------------DCVTWNTVISGYAKTGEMEEALR 81
            P+R                                 D  T + ++  Y K   +++AL 
Sbjct: 146 SPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALC 205

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM---------PGRDSASLSALVSGL 132
            F  MP RN VSW + I+G +QN      +E F  M         P   SA  S      
Sbjct: 206 FFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSC 265

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG-YGQRGRVEEARKLFDKIP----- 186
           +  G    A  +  K  S         R   T IV  Y +   + +AR+ F  +P     
Sbjct: 266 LNTGRQLHAHAIKNKFSSD--------RVVGTAIVDVYAKANSLTDARRAFFGLPNHTVE 317

Query: 187 ------VNCDRGEGNVRF----------------------KRNIVSWNSMIMCYAKAGDV 218
                 V       ++RF                      + + ++  S++  Y K   +
Sbjct: 318 TSNAMMVGLFMIRSSIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIKSVLDLYGKCKAL 377

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
           + A  IF+ M ++D+ SWN +I+        ++    F +M   D    + +V  Y + G
Sbjct: 378 MEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFDAFVASTVVDMYCKCG 437

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
            ++ A     R+  + +VSWN++++G   NK+ E A K F +M   G KPD  TF+++L 
Sbjct: 438 IIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVLD 497

Query: 339 MSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
             + +  + LG QIH Q++ + ++ D  I++ L+ MYA+CG + ++ ++FE+++  ++ V
Sbjct: 498 TCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEK-RDFV 556

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWNAMI G A HG   EAL +F+ M+   V+P + TF++VL AC+H GL ++G ++F  M
Sbjct: 557 SWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLM 616

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517
              Y +EP++EHFA +VDI+GR    ++A+  I  MPF+ D  +W  LL  C++  +VE+
Sbjct: 617 TTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEI 676

Query: 518 AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A++AA  ++ ++P++S+ Y+LL N+YA+ G+W D +  R L+K   +KK  G SW++
Sbjct: 677 AELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIE 733



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 141/291 (48%), Gaps = 36/291 (12%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N ++  YA+      AR +F+ M  RDT SWNTM++ Y H  D+  A  LF  MP PD +
Sbjct: 56  NCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVV 115

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           +WNA+VSGY Q G  + ++D                               LF++M   G
Sbjct: 116 SWNALVSGYCQRGMFQESVD-------------------------------LFVEMARRG 144

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEAR 384
             PDR TF+ +L   S + +L LG+Q+H +  KT +  DV   +AL+ MY +C ++ +A 
Sbjct: 145 VSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDAL 204

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
             F  M   +N VSW + I GC  +      LELF  M+   +  +  ++ S   +CA  
Sbjct: 205 CFFYGMP-ERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAM 263

Query: 445 GLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
             +  GRQ H  ++ N++  +  +    ++VD+  +   L DA     G+P
Sbjct: 264 SCLNTGRQLHAHAIKNKFSSDRVVG--TAIVDVYAKANSLTDARRAFFGLP 312



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 193/434 (44%), Gaps = 83/434 (19%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N L+  Y +      AR++FD +P            +R+ VSWN+M+  Y+ AGD+ +A 
Sbjct: 56  NCLLQMYARCAGAACARRVFDAMP------------RRDTVSWNTMLTAYSHAGDISTAV 103

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW----------- 267
            +F+ M + D  SWN ++SGY      +E+ +LFV+M      PD  T+           
Sbjct: 104 ALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALE 163

Query: 268 ------------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                                   +A+V  Y +  +L+ AL FF  MP++N VSW S IA
Sbjct: 164 ELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGSAIA 223

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-P 362
           GC  N+ Y   ++LFI+MQ  G    + +++S     + +  L+ G Q+H    K     
Sbjct: 224 GCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSS 283

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           D  +  A++ +YA+  ++ +AR  F  +     V + NAM+ G          L + +S 
Sbjct: 284 DRVVGTAIVDVYAKANSLTDARRAFFGLP-NHTVETSNAMMVG----------LFMIRSS 332

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
             F V    ++   V SACA      E + +F       G +       S++D+ G+   
Sbjct: 333 IRFDV----VSLSGVFSACA------ETKGYFP------GQQVHCLAIKSVLDLYGKCKA 376

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           L +A  + +GM  + D   W A++ A   + + +   +    +++ +   ++  V   +M
Sbjct: 377 LMEAYLIFQGMK-QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFDAFVASTVV---DM 432

Query: 543 YADVGRWDDANEVR 556
           Y   G  D+A ++ 
Sbjct: 433 YCKCGIIDEAQKLH 446



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 133/551 (24%), Positives = 227/551 (41%), Gaps = 95/551 (17%)

Query: 51  LFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANA 110
           +FD MP RD V+WNT+++ Y+  G++  A+ LF+ MP  +VVSWNA++SG+ Q G    +
Sbjct: 74  VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 133

Query: 111 IEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYN 163
           ++ F  M  R    D  + + L+       EL    +V    VK G   D     VR  +
Sbjct: 134 VDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEID-----VRTGS 188

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
            L+  YG+   +++A   F  +P            +RN VSW S I    +    V   E
Sbjct: 189 ALVDMYGKCRSLDDALCFFYGMP------------ERNWVSWGSAIAGCVQNEQYVRGLE 236

Query: 224 IFEQMLE--------------RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA 269
           +F +M                R   + + + +G    L      N F      D +   A
Sbjct: 237 LFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTG--RQLHAHAIKNKF----SSDRVVGTA 290

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +V  YA+  +L  A   F  +P   + + N+M+ G            LF  M     + D
Sbjct: 291 IVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG------------LF--MIRSSIRFD 336

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEE 389
             + S + S  +       G Q+H +  K+V          + +Y +C A++EA +IF+ 
Sbjct: 337 VVSLSGVFSACAETKGYFPGQQVHCLAIKSV----------LDLYGKCKALMEAYLIFQG 386

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           MK  K+ VSWNA+I     +G   + +  F  M  F       T + +   C   G+++E
Sbjct: 387 MK-QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFDAFVAS-TVVDMYCKC---GIIDE 441

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK---GMPFEPDKAVWGALL 506
            ++    +  +     ++  + +++     +   E A         M  +PD   +  +L
Sbjct: 442 AQKLHDRIGGQ-----QVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVL 496

Query: 507 GACRVHNNVEL-----AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
             C     +EL      Q+  + ++  E  +ST    L +MYA  G   D+     L+  
Sbjct: 497 DTCANLATIELGKQIHGQIIKQEMLDDEYISST----LVDMYAKCGDMPDS-----LLVF 547

Query: 562 NNIKKPTGYSW 572
             ++K    SW
Sbjct: 548 EKVEKRDFVSW 558


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 197/624 (31%), Positives = 317/624 (50%), Gaps = 86/624 (13%)

Query: 13  KARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP----ERDCVTWNTVIS 68
           +AR+LFD+   + VVSWNVMISGY      G  +EA  LF +M     E D  T+ +++S
Sbjct: 81  EARQLFDKFSNKSVVSWNVMISGYAHR---GLAQEAFNLFTLMQQERLEPDKFTFVSILS 137

Query: 69  GYAKTGEM----EEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
             +    +    E  +R+  +  A +    NA+IS + + G V +A   FD M  RD  S
Sbjct: 138 ACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVS 197

Query: 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK 184
            + L     ++G                  GE+ ++ Y+ ++     + RV  +R  +  
Sbjct: 198 WTTLTGAYAESGY-----------------GEESLKTYHAML-----QERVRPSRITYMN 235

Query: 185 IPVNC------DRGEG------NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           +   C      ++G+          +  ++    ++   Y K G    ARE+FE +  RD
Sbjct: 236 VLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRD 295

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW--------------------- 267
             +WNTMI G++    +EEA   F +M      PD  T+                     
Sbjct: 296 VIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHA 355

Query: 268 --------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
                         NA+++ Y++ G+++ A   F RMP++++VSW +++           
Sbjct: 356 RAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVE 415

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALIT 372
           +   F QM  +G K ++ T+  +L   S  V L  G +IH  V K  ++ D+ + NAL++
Sbjct: 416 SFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMS 475

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY +CG++ +A  +FE M + ++VV+WN +IGG   +G   EAL+ ++ M+S  + P   
Sbjct: 476 MYFKCGSVEDAIRVFEGMSM-RDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAA 534

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TF++VLSAC    LVEEGR+ F  M  +YGI P  +H+A +VDI+ R G L +A D+I  
Sbjct: 535 TFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILT 594

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
           +P +P  A+WGALL ACR+H NVE+ + AAE  +K+EP+N+  YV L  +YA  G W D 
Sbjct: 595 IPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDV 654

Query: 553 NEVRLLMKSNNIKKPTGYSWVDFS 576
            ++R  MK   +KK  G SW++ +
Sbjct: 655 AKLRKFMKERGVKKEPGRSWIEIA 678



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 215/457 (47%), Gaps = 30/457 (6%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR--- 120
           NT++  YA  G + EA +LF+    ++VVSWN MISG+   G    A   F  M      
Sbjct: 67  NTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLE 126

Query: 121 -DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            D  +  +++S       L+    + V+      G  +     N LI  Y + G V +AR
Sbjct: 127 PDKFTFVSILSACSSPAVLNWGREIHVRVME--AGLANDTTVGNALISMYAKCGSVRDAR 184

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFS 235
           ++FD +              R+ VSW ++   YA++G    + + +  ML+        +
Sbjct: 185 RVFDAMA------------SRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRIT 232

Query: 236 WNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           +  ++S    +  +E+   +   +     H D     A+   Y + G  + A + F+ + 
Sbjct: 233 YMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLS 292

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
            +++++WN+MI G   +   E A   F +M  EG  PDR T++++LS  +    L  G +
Sbjct: 293 YRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKE 352

Query: 352 IHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           IH    K  ++ DV   NALI MY++ G++ +AR +F+ M   ++VVSW  ++G  A   
Sbjct: 353 IHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLLGRYADCD 411

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
              E+   FK M    V    IT++ VL AC++   ++ G++   + V + G+   +   
Sbjct: 412 QVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKE-IHAEVVKAGLLADLAVT 470

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
            +L+ +  + G +EDA+ + +GM    D   W  L+G
Sbjct: 471 NALMSMYFKCGSVEDAIRVFEGMSMR-DVVTWNTLIG 506



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 159/349 (45%), Gaps = 43/349 (12%)

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK 258
           K N+   N+++  YA  G V  AR++F++   +   SWN MISGY H    +EA NLF  
Sbjct: 60  KPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTL 119

Query: 259 MPH-------------------PDTLTW--------------------NAMVSGYAQIGN 279
           M                     P  L W                    NA++S YA+ G+
Sbjct: 120 MQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGS 179

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           +  A   F  M  ++ VSW ++      +   E ++K +  M  E  +P R T+ ++LS 
Sbjct: 180 VRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSA 239

Query: 340 SSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
              +  L  G QIH  +V      DV ++ AL  MY +CGA  +AR +FE +   ++V++
Sbjct: 240 CGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLS-YRDVIA 298

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN MI G    G   EA   F  M    V P   T+ +VLSACA  G +  G++   +  
Sbjct: 299 WNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKE-IHARA 357

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
            + G+   +    +L+++  + G ++DA  +   MP + D   W  LLG
Sbjct: 358 AKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLLG 405


>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
 gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 192/566 (33%), Positives = 302/566 (53%), Gaps = 81/566 (14%)

Query: 48  ARYLFDIMPER---DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           A+Y+  ++      D  +W   I    + G+ +EA  L+  M       W    + F   
Sbjct: 55  AQYVHSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQ-----RWGLWPTTFA-- 107

Query: 105 GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT 164
             +++A++   R+  R        + GL  +G++ +             GG D +     
Sbjct: 108 --LSSALKACARIAYR--------MGGLSIHGQVQKFGF---------SGGGDGIYVETA 148

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           L+  Y + G +E ARK+FD++             +RN+VSWNSM+  Y K+GD+V A+ +
Sbjct: 149 LVDFYCKLGDMEIARKMFDEMA------------ERNVVSWNSMLAGYLKSGDLVVAQRV 196

Query: 225 FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
           F+++ ++D  SWN+MISGY    DME+A +LF +MP  +  +WNAM+SGY + G+++ A 
Sbjct: 197 FDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSAR 256

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE------------------ 326
            FF  MPQ+N VSW +MI+G     D + A +LF Q  V G+                  
Sbjct: 257 SFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQ--VGGKDLLLFNAMIACYAQNSRP 314

Query: 327 -----------------KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINN 368
                            +PD  T +S++S  S + DL  G  I   + +  I  D  +  
Sbjct: 315 KEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLAT 374

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           AL+ +YA+CG+I +A  +F  ++  K++V++ AMI GC  +G A +A++LF  M   ++ 
Sbjct: 375 ALLDLYAKCGSIDKAYELFHGLRK-KDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 433

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P  ITFI +L+A  HAGLVEEG   F SM  +Y + P ++H+  +VD+ GR GRL++A++
Sbjct: 434 PNSITFIGLLTAYNHAGLVEEGYHCFTSM-KKYNLVPSVDHYGIMVDLFGRAGRLQEALE 492

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           LIK MP +P   VWGALL ACR+HNNVE  ++AA+   ++EP+ +    LL N+YA   R
Sbjct: 493 LIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYCSLLSNIYASGER 552

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVD 574
           WDD   +R + K     K  G SW++
Sbjct: 553 WDDVKRLRKVTKEKGFSKIPGCSWME 578



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 129/408 (31%), Positives = 201/408 (49%), Gaps = 82/408 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K  +M  ARK+FDEM +R+VVSWN M++GY+ S   G L  A+ +FD +P++D 
Sbjct: 149 LVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKS---GDLVVAQRVFDEIPQKDV 205

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++WN++ISGYA+ G+ME+AL LF  MP RN  SWNAMISG+++ GD+ +A  FFD MP R
Sbjct: 206 ISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQR 265

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           ++ S   ++SG  + G++D A  +  +      GG+DL+  +N +I  Y Q  R +EA K
Sbjct: 266 NNVSWMTMISGYSKCGDVDSACELFDQV-----GGKDLL-LFNAMIACYAQNSRPKEALK 319

Query: 181 LFDKI---PVNCDRGE-------------GNVRFKRNIVSW-------------NSMIMC 211
           LF+ +    VN    E             G++RF   I S+              +++  
Sbjct: 320 LFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDL 379

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISG----------------------------- 242
           YAK G +  A E+F  + ++D  ++  MI G                             
Sbjct: 380 YAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITF 439

Query: 243 ------YIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMP- 291
                 Y H   +EE  + F  M      P    +  MV  + + G L+ AL+  K MP 
Sbjct: 440 IGLLTAYNHAGLVEEGYHCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPM 499

Query: 292 QKNLVSWNSMIAGCETNKDYE-GAIKLFIQMQVEGEKPDRHTFSSILS 338
           Q +   W +++  C  + + E G I      ++E   PD   + S+LS
Sbjct: 500 QPHAGVWGALLLACRLHNNVEFGEIAAQHCFELE---PDTTGYCSLLS 544


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 198/562 (35%), Positives = 297/562 (52%), Gaps = 59/562 (10%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
           VT   ++S   + G++  A  LF+ +P  N   +N +I G+  + D   ++  F +M   
Sbjct: 72  VTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSA 131

Query: 118 -PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            P  +  +   ++          EA  V  +      G    V+  N ++  Y     + 
Sbjct: 132 GPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQ--NAILTAYVACRLIL 189

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERD 232
            AR++FD I              R IVSWNSMI  Y+K G    A  +F++ML    E D
Sbjct: 190 SARQVFDDIS------------DRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEAD 237

Query: 233 TFSWNTMISG-----------YIHV-----------------LDM-------EEASNLFV 257
            F+  +++S            ++H+                 +DM       + A ++F 
Sbjct: 238 VFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFD 297

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           +M   D ++W +MV+ YA  G +E A+  F  MP KN+VSWNS+I        Y  A++L
Sbjct: 298 QMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVEL 357

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYAR 376
           F +M + G  PD  T  SILS  S   DL LG Q H  +   +I   V + N+LI MYA+
Sbjct: 358 FHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAK 417

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CGA+  A  IF  M   KNVVSWN +IG  A HGF  EA+E+FKSM++  + P  ITF  
Sbjct: 418 CGALQTAIDIFFGMPE-KNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTG 476

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           +LSAC+H+GLV+ GR +F  M++ + I P +EH+A +VD++GR G L +AM LI+ MP +
Sbjct: 477 LLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVK 536

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
           PD  VWGALLGACR++ N+E+A+   + L+++   NS  YVLL NMY++  RWDD  ++R
Sbjct: 537 PDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIR 596

Query: 557 LLMKSNNIKKPTGYSWVDFSPC 578
            +M  + IKK    S+++   C
Sbjct: 597 KIMDDSGIKKCRAISFIEIDGC 618



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 152/335 (45%), Gaps = 60/335 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           +++ YV  R +  AR++FD++  R +VSWN MI+GY      GF +EA  LF  M     
Sbjct: 178 ILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGY---SKMGFCDEAILLFQEMLQLGV 234

Query: 56  ----------------------------------PERDCVTWNTVISGYAKTGEMEEALR 81
                                              E D +  N +I  YAK G ++ A  
Sbjct: 235 EADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKH 294

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           +F+ M  ++VVSW +M++ +   G V NA++ F+ MP ++  S ++++  L+Q G+  EA
Sbjct: 295 VFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEA 354

Query: 142 ARVLVK-CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +  + C S     +  + +  +     G     ++A          CD    N+    
Sbjct: 355 VELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYI------CD----NI-ITV 403

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY-IHVLDMEEASNLFVKM 259
           ++   NS+I  YAK G + +A +IF  M E++  SWN +I    +H    EEA  +F  M
Sbjct: 404 SVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFG-EEAIEMFKSM 462

Query: 260 P----HPDTLTWNAMVSGYAQIGNLELALDFFKRM 290
                +PD +T+  ++S  +  G +++   +F  M
Sbjct: 463 QASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIM 497


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 176/516 (34%), Positives = 282/516 (54%), Gaps = 58/516 (11%)

Query: 67  ISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDV---ANAIEFFDRMPGRDSA 123
           ++   + G++  A   F S   +   ++N +++G+ +   +   A+A   FD +P  D+ 
Sbjct: 19  VAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTV 78

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S                                     YNTL+  +   G ++ AR++F 
Sbjct: 79  S-------------------------------------YNTLLSCHFACGDIDGARRVFS 101

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
            +PV            +++ SWN+M+   +K G    A  +F  M  R+  SWN M++  
Sbjct: 102 TMPV------------KDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAAL 149

Query: 244 IHVLDMEEASNLFVKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
               DM  A +LF   P   D + W AMVSGY   GN++ A++FF  MP +NLVSWN+++
Sbjct: 150 ACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVV 209

Query: 303 AGCETNKDYEGAIKLFIQMQVEGE--KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           AG   N   + A+++F  M VE    +P+  T SS+L   S +  L  G Q+HQ   K  
Sbjct: 210 AGYVKNSRADDALRVFKTM-VEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLP 268

Query: 361 IP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
           +  +V +  +L++MY +CG + +A  +F+EM   K++V+WNAMI G A HG   +A++LF
Sbjct: 269 LSRNVTVGTSLLSMYCKCGDLNDACKVFDEMST-KDIVAWNAMISGYAQHGGGMQAIKLF 327

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           + M+   V+P +IT ++VL+AC H GL + G Q F++M   Y IEP+I+H++ +VD++ R
Sbjct: 328 EKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCR 387

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G LE A+++I  MPFEP  + +G LL ACRV+ N+E A+ AA  L++ +P+N+  YV L
Sbjct: 388 AGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQL 447

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
            N+YA   +W D + VR  MK N + K  GYSW++ 
Sbjct: 448 ANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEI 483



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 208/418 (49%), Gaps = 32/418 (7%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           ++  V+R ++A A + F     +   ++N +++GY  + G   L +AR LFD +P  D V
Sbjct: 19  VAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTV 78

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           ++NT++S +   G+++ A R+F++MP ++V SWN M+SG  +NG    A   F  MP R+
Sbjct: 79  SYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRN 138

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           + S +A+V+ L  +G++  A  +      + D        +  ++ GY   G V++A + 
Sbjct: 139 AVSWNAMVAALACSGDMGAAEDLFRNAPEKTDA-----ILWTAMVSGYMDTGNVQKAMEF 193

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN--TM 239
           F  +PV            RN+VSWN+++  Y K      A  +F+ M+E      N  T+
Sbjct: 194 FGAMPV------------RNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTL 241

Query: 240 ISGYIHVLDM------EEASNLFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQ 292
            S  +   ++       +     +K+P    +T   +++S Y + G+L  A   F  M  
Sbjct: 242 SSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMST 301

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHLGM 350
           K++V+WN+MI+G   +     AIKLF +M+ EG  PD  T  ++L+  + +G+ D   G+
Sbjct: 302 KDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCD--FGI 359

Query: 351 QIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           Q  + + +   + P +   + ++ +  R G +  A  +   M    +  ++  ++  C
Sbjct: 360 QCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTAC 417



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 138/297 (46%), Gaps = 48/297 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-D 59
           M+SG  K     +A  +F  MP R+ VSWN M++    S   G  E+   LF   PE+ D
Sbjct: 114 MVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAALACSGDMGAAED---LFRNAPEKTD 170

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            + W  ++SGY  TG +++A+  F +MP RN+VSWNA+++G+++N    +A+  F  M  
Sbjct: 171 AILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTM-- 228

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
                    V   I        + VL+ C              N   +G+G+     +  
Sbjct: 229 ---------VEDSIVQPNASTLSSVLLGCS-------------NLSALGFGR-----QVH 261

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           +   K+P++           RN+    S++  Y K GD+  A ++F++M  +D  +WN M
Sbjct: 262 QWCMKLPLS-----------RNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAM 310

Query: 240 ISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           ISGY       +A  LF KM      PD +T  A+++     G  +  +  F+ M +
Sbjct: 311 ISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQE 367



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++S Y K  ++  A K+FDEM  +D+V+WN MISGY +  G G   +A  LF+ M +   
Sbjct: 279 LLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGY-AQHGGGM--QAIKLFEKMKDEGV 335

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
             D +T   V++    TG  +  ++ F +M         +  ++ M+    + G +  A+
Sbjct: 336 VPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAV 395

Query: 112 EFFDRMP 118
                MP
Sbjct: 396 NMIHSMP 402


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 185/549 (33%), Positives = 305/549 (55%), Gaps = 32/549 (5%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G L  A+  FD+    +  ++NT+I+ YAK   +  A ++F+ +P  ++VS+N +I+ + 
Sbjct: 58  GSLHNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYA 117

Query: 103 QNGDVANAIEFFDRMP----GRDSASLSALVSGLIQN-GELDEAARVLVKCGSRCDGGED 157
             G+   A+  F  +     G D  +LS ++     + G + +    +V CG  C    +
Sbjct: 118 DRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVN 177

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
                N ++  Y ++G + EAR++F ++      GEG     R+ VSWN+MI+   +  +
Sbjct: 178 -----NAVLACYSRKGFLNEARRVFREM------GEGG---GRDEVSWNAMIVACGQHRE 223

Query: 218 VVSAREIFEQMLER----DTFSWNTMISGYIHVLDM---EEASNLFVKMP-HPDTLTWNA 269
            + A E+F +M+ R    D F+  ++++ +  V D+    +   + +K   H ++   + 
Sbjct: 224 GLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSG 283

Query: 270 MVSGYAQI-GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY-EGAIKLFIQMQVEGEK 327
           ++  Y++  G +      F+ +   +LV WN+MI+G    +D  E  I  F +MQ  G  
Sbjct: 284 LIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFH 343

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP--DVPINNALITMYARCGAIVEARI 385
           PD  +F  + S  S +    +G Q+H +  K+ IP   V +NNAL+ MY++CG + +AR 
Sbjct: 344 PDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARR 403

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F+ M    N+VS N+MI G A HG   E+L LF+ M    + P  ITFI+VLSAC H G
Sbjct: 404 VFDTMPE-HNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTG 462

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
            VEEG+++F  M   + IEP  EH++ ++D++GR G+L++A  +I+ MPF P    W  L
Sbjct: 463 KVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATL 522

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           LGACR H NVELA  AA   +++EP N+ PYV+L NMYA   RW++A  V+ LM+   +K
Sbjct: 523 LGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVK 582

Query: 566 KPTGYSWVD 574
           K  G SW++
Sbjct: 583 KKPGCSWIE 591



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 127/518 (24%), Positives = 207/518 (39%), Gaps = 135/518 (26%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS------------------ 42
           +I+ Y K   +  AR++FDE+PQ D+VS+N +I+ Y + RG                   
Sbjct: 81  LINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAY-ADRGECRPALRLFAEVRELRFGL 139

Query: 43  -GF--------------LEEARYLFDIMPERDCVTW--NTVISGYAKTGEMEEALRLFNS 85
            GF              L    + F ++   DC     N V++ Y++ G + EA R+F  
Sbjct: 140 DGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFRE 199

Query: 86  M---PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGEL 138
           M     R+ VSWNAMI    Q+ +   A+E F  M  R    D  +++++++        
Sbjct: 200 MGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAF------ 253

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
                    C     GG      ++ +++  G  G              N   G G    
Sbjct: 254 --------TCVKDLVGGMQ----FHGMMIKSGFHG--------------NSHVGSG---- 283

Query: 199 KRNIVSWNSMIMCYAK-AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM-EEASNLF 256
                    +I  Y+K AG +V  R++FE++   D   WNTMISG+    D+ E+    F
Sbjct: 284 ---------LIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCF 334

Query: 257 VKMP----HPDTLTW------------------------------------NAMVSGYAQ 276
            +M     HPD  ++                                    NA+V+ Y++
Sbjct: 335 REMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSK 394

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            GN+  A   F  MP+ N+VS NSMIAG   +     +++LF  M  +   P+  TF ++
Sbjct: 395 CGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAV 454

Query: 337 LSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           LS       +  G +   M+ +   + P+    + +I +  R G + EA  I E M    
Sbjct: 455 LSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNP 514

Query: 395 NVVSWNAMIGGCASHG---FATEALELFKSMRSFKVLP 429
             + W  ++G C  HG    A +A   F  +  +   P
Sbjct: 515 GSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAP 552



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 144/311 (46%), Gaps = 17/311 (5%)

Query: 206 NSMIMCYAKAGDVVSAREI----FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           N +  C A+  D+++ + +    F+ ++   T+  N     Y     +  A   F    +
Sbjct: 14  NLLKACIAQR-DLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLTQY 72

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           P+  ++N +++ YA+   + LA   F  +PQ ++VS+N++IA      +   A++LF ++
Sbjct: 73  PNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEV 132

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAI 380
           +      D  T S ++       D+ L  Q+H  V          +NNA++  Y+R G +
Sbjct: 133 RELRFGLDGFTLSGVIIACGD--DVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFL 190

Query: 381 VEARIIFEEMKL--LKNVVSWNAMIGGCASHGFATEALELFKSM--RSFKVLPTYITFIS 436
            EAR +F EM     ++ VSWNAMI  C  H    EA+ELF+ M  R  KV     T  S
Sbjct: 191 NEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKV--DMFTMAS 248

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR-HGRLEDAMDLIKGMPF 495
           VL+A      +  G Q F  M+ + G        + L+D+  +  G + +   + + +  
Sbjct: 249 VLTAFTCVKDLVGGMQ-FHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIA- 306

Query: 496 EPDKAVWGALL 506
            PD  +W  ++
Sbjct: 307 APDLVLWNTMI 317



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/304 (20%), Positives = 128/304 (42%), Gaps = 54/304 (17%)

Query: 37  ISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEE------------------ 78
           + S+ +G + E R +F+ +   D V WNT+ISG+++  ++ E                  
Sbjct: 287 LYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDD 346

Query: 79  -----------------------ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
                                  AL + + +P   V   NA+++ + + G+V +A   FD
Sbjct: 347 CSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFD 406

Query: 116 RMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
            MP  +  SL+++++G  Q+G   E+ R L +   + D   + +  +  ++      G+V
Sbjct: 407 TMPEHNMVSLNSMIAGYAQHGVEVESLR-LFELMLQKDIAPNTI-TFIAVLSACVHTGKV 464

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LERDTF 234
           EE +K F+ +       +   R +     ++ MI    +AG +  A  I E M     + 
Sbjct: 465 EEGQKYFNMM-------KERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSI 517

Query: 235 SWNTMISGYIHVLDME---EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
            W T++       ++E   +A+N F+++   +   +  + + YA     E A    + M 
Sbjct: 518 EWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMR 577

Query: 292 QKNL 295
           ++ +
Sbjct: 578 ERGV 581



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 6/116 (5%)

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEE 389
            TF ++L       DL  G  +H +  K++I P   ++N    +Y++CG++  A+  F +
Sbjct: 10  QTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSF-D 68

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +    NV S+N +I   A H     A ++F  +      P  +++ ++++A A  G
Sbjct: 69  LTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQ----PDIVSYNTLIAAYADRG 120


>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25970
 gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 201/632 (31%), Positives = 321/632 (50%), Gaps = 77/632 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y+K   +  A  LFDEMP+RD VSWN MISGY S    G LE+A  LF  M     
Sbjct: 41  ILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSC---GKLEDAWCLFTCMKRSGS 97

Query: 57  -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                                              E +    ++++  YAK   +E+A  
Sbjct: 98  DVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFE 157

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSA--------LVSGLI 133
            F  +   N VSWNA+I+GF+Q  D+  A      M  + + ++ A        L+   +
Sbjct: 158 AFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPM 217

Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
               L +    ++K G + +     +   N +I  Y   G V +A+++FD        G 
Sbjct: 218 FCNLLKQVHAKVLKLGLQHE-----ITICNAMISSYADCGSVSDAKRVFD--------GL 264

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMIS---GYIHV 246
           G     ++++SWNSMI  ++K     SA E+F QM    +E D +++  ++S   G  H 
Sbjct: 265 GG---SKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQ 321

Query: 247 LDMEEASNLFVKMPHPD-TLTWNAMVSGYAQI--GNLELALDFFKRMPQKNLVSWNSMIA 303
           +  +    + +K      T   NA++S Y Q   G +E AL  F+ +  K+L+SWNS+I 
Sbjct: 322 IFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIIT 381

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIP 362
           G       E A+K F  ++    K D + FS++L   S +  L LG QIH + TK+  + 
Sbjct: 382 GFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVS 441

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           +  + ++LI MY++CG I  AR  F+++    + V+WNAMI G A HG    +L+LF  M
Sbjct: 442 NEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQM 501

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
            +  V   ++TF ++L+AC+H GL++EG +    M   Y I+PR+EH+A+ VD++GR G 
Sbjct: 502 CNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGL 561

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           +  A +LI+ MP  PD  V    LG CR    +E+A   A  L+++EPE+   YV L +M
Sbjct: 562 VNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHM 621

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           Y+D+ +W++   V+ +MK   +KK  G+SW++
Sbjct: 622 YSDLKKWEEKASVKKMMKERGVKKVPGWSWIE 653



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 125/281 (44%), Gaps = 31/281 (11%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D    N ++  Y + G L  A   F  MP+++ VSWN+MI+G  +    E A  LF  M+
Sbjct: 34  DIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMK 93

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIV 381
             G   D ++FS +L   + +    LG Q+H +V K     +V + ++L+ MYA+C  + 
Sbjct: 94  RSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVE 153

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR----------SFKVLPTY 431
           +A   F+E+    N VSWNA+I G         A  L   M           +F  L T 
Sbjct: 154 DAFEAFKEIS-EPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTL 212

Query: 432 I---TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           +    F ++L    HA +++ G QH  ++ N            +++      G + DA  
Sbjct: 213 LDDPMFCNLLKQ-VHAKVLKLGLQHEITICN------------AMISSYADCGSVSDAKR 259

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           +  G+    D   W +++     H   EL + A E  ++++
Sbjct: 260 VFDGLGGSKDLISWNSMIAGFSKH---ELKESAFELFIQMQ 297


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 165/418 (39%), Positives = 249/418 (59%), Gaps = 18/418 (4%)

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           +  +N++  GY Q    E  R++F ++            F+RN+V+W SMI  Y  + D+
Sbjct: 16  IALWNSMFRGYAQS---ESYREIFCEM------------FERNVVAWTSMINGYILSADL 60

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
           VSAR +F+   ERD   WN M+SGYI   DM EA  LF +MP+ D + WN ++ GYA  G
Sbjct: 61  VSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNG 120

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSIL 337
           N+E     F+ MP++N+ SWN++I G   N  +   +  F +M  E +  P+  T  ++L
Sbjct: 121 NVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVL 180

Query: 338 SMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
           S  + +  L LG  +H     + +  +V + NAL+ MYA+CG I  A  +F  M   K++
Sbjct: 181 SACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDT-KDL 239

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
           +SWN +IGG A H    +AL LF  M++    P  ITFI +L AC H GLVE+G  +F+S
Sbjct: 240 ISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQS 299

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE 516
           M ++Y I P+IEH+  +VD++ R GRLE AM  ++ MP E D  +W  LLGACR++ NVE
Sbjct: 300 MADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVE 359

Query: 517 LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           LA++A + L+++EP+N   YV+L N+Y D GRW+D   +++ M+    KK  G S ++
Sbjct: 360 LAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIE 417



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 192/422 (45%), Gaps = 63/422 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M  GY +       R++F EM +R+VV+W  MI+GYI S     L  AR LFD+ PERD 
Sbjct: 22  MFRGYAQSESY---REIFCEMFERNVVAWTSMINGYILSAD---LVSARRLFDLAPERDV 75

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V WN ++SGY + G+M EA +LF+ MP R+V+ WN ++ G+  NG+V      F+ MP R
Sbjct: 76  VLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPER 135

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +AL+ G   NG   E    ++    R     D+     TL+       R+  A  
Sbjct: 136 NIFSWNALIGGYAHNGLFFE----VLGSFKRMLSESDVPPNDATLVTVLSACARL-GALD 190

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           L   + V  +        K N+   N+++  YAK G + +A  +F  M  +D  SWNT+I
Sbjct: 191 LGKWVHVYAESSG----LKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLI 246

Query: 241 SGYIHVLDMEEASNLFVKMPH----PDTLT------------------------------ 266
            G        +A NLF +M +    PD +T                              
Sbjct: 247 GGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLI 306

Query: 267 ------WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFI 319
                 +  MV   A+ G LE A+ F ++MP + + V W  ++  C   K+ E A +L +
Sbjct: 307 MPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELA-ELAL 365

Query: 320 Q--MQVEGEKPDRHTFSSILSMSSG----IVDLHLGMQIHQMVTKTVIPDVPINNALITM 373
           Q  +++E + P  +   S +   +G    +  L + M+            + +N+A++  
Sbjct: 366 QRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEF 425

Query: 374 YA 375
           Y+
Sbjct: 426 YS 427


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 184/550 (33%), Positives = 301/550 (54%), Gaps = 34/550 (6%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G L  AR  FD   E +  ++N ++  YAK  ++  A +LF+  P  + VS+N +ISG+ 
Sbjct: 57  GCLSYARAAFDSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYA 116

Query: 103 QNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
              +   A+  F RM       D  +LS L++      +L +     + C +   G +  
Sbjct: 117 DARETVAAMVLFKRMRELGFEVDGFTLSGLIAACCDRVDLIKQ----LHCFAVSGGFDSY 172

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
               N  +  Y + G + EA  +F         G   +R   + VSWNSMI+ Y +  + 
Sbjct: 173 SSVNNAFVTYYSKGGLLREAVSVF--------YGMDGLR---DEVSWNSMIVAYGQHKEG 221

Query: 219 VSAREIFEQMLER----DTFSWNTMISGYI---HVLDMEEASNLFVKMP-HPDTLTWNAM 270
             A  ++++M+ +    D F+  ++++      H++   +     +K   H ++   + +
Sbjct: 222 AKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGL 281

Query: 271 VSGYAQIGNLELALD---FFKRMPQKNLVSWNSMIAGCETNKDY-EGAIKLFIQMQVEGE 326
           +  Y++ G  +   D    F+ +   +LV WN+MI+G   N+++ E A+K F QMQ  G 
Sbjct: 282 IDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGH 341

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD--VPINNALITMYARCGAIVEAR 384
           +PD  +F  + S  S +     G QIH +  K+ IP   + +NNALI++Y + G +++AR
Sbjct: 342 RPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDAR 401

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F+ M  L N VS+N MI G A HG  TEAL L++ M    + P  ITF+++LSACAH 
Sbjct: 402 RVFDRMPEL-NAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHC 460

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           G V+EG+++F +M   + IEP  EH++ ++D++GR G+LE+A   I  MP++P    W A
Sbjct: 461 GKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAA 520

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           LLGACR H N+ LA+ AA+ LM ++P  +TPYV+L NMYAD G+W++   VR  M+   I
Sbjct: 521 LLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRI 580

Query: 565 KKPTGYSWVD 574
           +K  G SW++
Sbjct: 581 RKKPGCSWIE 590



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 138/535 (25%), Positives = 220/535 (41%), Gaps = 94/535 (17%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y K   ++ AR  FD   + +V S+NV++  Y        +  AR LFD  P+ D V++N
Sbjct: 53  YSKCGCLSYARAAFDSTEEPNVFSYNVIVKAYAKDSK---IHIARQLFDENPQPDTVSYN 109

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNV----VSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           T+ISGYA   E   A+ LF  M          + + +I+      D+   +  F    G 
Sbjct: 110 TLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGLIAACCDRVDLIKQLHCFAVSGGF 169

Query: 121 DSASL--SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
           DS S   +A V+   + G L EA  V        DG  D V ++N++IV YGQ     +A
Sbjct: 170 DSYSSVNNAFVTYYSKGGLLREAVSVFYG----MDGLRDEV-SWNSMIVAYGQHKEGAKA 224

Query: 179 RKLFDKI------------------PVNCDRGEGNVRFKRNIVS---------WNSMIMC 211
             L+ ++                    + D   G  +F   ++           + +I  
Sbjct: 225 LALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDF 284

Query: 212 YAKAG---DVVSAREIFEQMLERDTFSWNTMISGY-IHVLDMEEASNLFVKMP----HPD 263
           Y+K G    +  + ++F+++L  D   WNTMISGY ++    EEA   F +M      PD
Sbjct: 285 YSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPD 344

Query: 264 TLTW------------------------------------NAMVSGYAQIGNLELALDFF 287
             ++                                    NA++S Y + GNL  A   F
Sbjct: 345 DCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVF 404

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
            RMP+ N VS+N MI G   +     A++L+ +M   G  P+  TF +ILS  +    + 
Sbjct: 405 DRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVD 464

Query: 348 LGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
            G +    + +T  + P+    + +I +  R G + EA    + M      V+W A++G 
Sbjct: 465 EGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGA 524

Query: 406 CASH---GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           C  H     A  A +    M+     P    ++ + +  A AG  EE     KSM
Sbjct: 525 CRKHKNMALAERAAKELMVMQPLAATP----YVMLANMYADAGKWEEMASVRKSM 575



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 160/397 (40%), Gaps = 106/397 (26%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG------------------- 41
           ++  Y K  ++  AR+LFDE PQ D VS+N +ISGY  +R                    
Sbjct: 80  IVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVD 139

Query: 42  ----SGFLEEARYLFDIMPERDCVTW-----------NTVISGYAKTGEMEEALRLFNSM 86
               SG +       D++ +  C              N  ++ Y+K G + EA+ +F  M
Sbjct: 140 GFTLSGLIAACCDRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGM 199

Query: 87  PA-RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS--------------ASLSALVSG 131
              R+ VSWN+MI  + Q+ + A A+  +  M  +                 SL  L+ G
Sbjct: 200 DGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGG 259

Query: 132 LIQNGELDEAA------------RVLVKCGSRCDGGEDLVRAY-----------NTLIVG 168
              +G+L +A                 KCG R DG  D  + +           NT+I G
Sbjct: 260 RQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGR-DGMSDSEKVFQEILSPDLVLWNTMISG 318

Query: 169 YG-QRGRVEEARKLFDKI------PVNCD-----------------RGEGNVRFKRNIVS 204
           Y       EEA K F ++      P +C                  +    +  K NI S
Sbjct: 319 YSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPS 378

Query: 205 -----WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
                 N++I  Y K+G+++ AR +F++M E +  S+N MI GY       EA  L+ +M
Sbjct: 379 NRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRM 438

Query: 260 PH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
                 P+ +T+ A++S  A  G ++    +F  M +
Sbjct: 439 LDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKE 475



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 130/286 (45%), Gaps = 10/286 (3%)

Query: 226 EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
           + ++   T+  N  ++ Y     +  A   F     P+  ++N +V  YA+   + +A  
Sbjct: 36  KSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKAYAKDSKIHIARQ 95

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F   PQ + VS+N++I+G    ++   A+ LF +M+  G + D  T S +++     VD
Sbjct: 96  LFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGLIAACCDRVD 155

Query: 346 LHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           L    Q+H   V+        +NNA +T Y++ G + EA  +F  M  L++ VSWN+MI 
Sbjct: 156 LI--KQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIV 213

Query: 405 GCASHGFATEALELFKSM--RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
               H    +AL L+K M  + FK+     T  SVL+A      +  GRQ F   + + G
Sbjct: 214 AYGQHKEGAKALALYKEMIFKGFKI--DMFTLASVLNALTSLDHLIGGRQ-FHGKLIKAG 270

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP--FEPDKAVWGALL 506
                   + L+D   + G  +   D  K       PD  +W  ++
Sbjct: 271 FHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMI 316



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 7/150 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS-SRGSGFLEEARYLFDIMPERD 59
           +IS Y K   +  AR++FD MP+ + VS+N MI GY     G+  L   + + D     +
Sbjct: 387 LISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPN 446

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAIEFF 114
            +T+  ++S  A  G+++E  + FN+M     +      ++ MI    + G +  A  F 
Sbjct: 447 NITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFI 506

Query: 115 DRMPGR-DSASLSALVSGLIQNGELDEAAR 143
           D MP +  S + +AL+    ++  +  A R
Sbjct: 507 DAMPYKPGSVAWAALLGACRKHKNMALAER 536


>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
 gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 159/377 (42%), Positives = 235/377 (62%), Gaps = 2/377 (0%)

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK 258
           +R++VSWNSMI    K G++  A ++F++M  +D  SWNT++ GY+   +M +A  LF  
Sbjct: 9   ERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLFES 68

Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
           MP  + ++W+ MVSGY + G++E+A   F RMP KNLVSW  +++G       + AI+ F
Sbjct: 69  MPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSF 128

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARC 377
            QM+  G KPD  T  SIL+  +    L LG ++H  + +      V ++NAL+ MYA+C
Sbjct: 129 EQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKC 188

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G +  A  +F  M   K++VSWN M+ G A HG   +AL+LF  MR     P  +T ++V
Sbjct: 189 GQVDRALSVFNGMSK-KDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAV 247

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           L AC HAG V+EG ++F +M  +YGI P IEH+  +VD++GR GRL++A  L++ MP EP
Sbjct: 248 LCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEP 307

Query: 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
           +  +WG LLGACR+HN V LA+   + L K+EP +   Y LL N++A  G W     VRL
Sbjct: 308 NVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWSSVANVRL 367

Query: 558 LMKSNNIKKPTGYSWVD 574
            MK+  I+KP+G S ++
Sbjct: 368 QMKNFGIQKPSGASSIE 384



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 190/374 (50%), Gaps = 38/374 (10%)

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELD 139
           +RLF  M  R+VVSWN+MI G L+ G+++ A + FD MP +D+ S + ++ G ++ GE++
Sbjct: 1   MRLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMN 60

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           +A  +      R       V +++T++ GY + G +E AR LFD++PV            
Sbjct: 61  KAFGLFESMPERN------VVSWSTMVSGYCKAGDMEMARMLFDRMPV------------ 102

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMI-----SGYIHVLDME 250
           +N+VSW  ++  YA  G    A   FEQM    L+ D  +  +++     SG + +    
Sbjct: 103 KNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRV 162

Query: 251 EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
             S   ++      ++ NA+V  YA+ G ++ AL  F  M +K+LVSWN M+ G   +  
Sbjct: 163 HTSIERIRYKCSVNVS-NALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGH 221

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSIL--SMSSGIVDLHLGMQIHQMVTKTVIPDVPINN 368
            E A++LF  M+ EG +PD+ T  ++L   + +G VD  +    +      ++P +    
Sbjct: 222 GEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYG 281

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH---GFATEALELFKSMRSF 425
            ++ +  R G + EA  + + M +  NVV W  ++G C  H   G A E L+       F
Sbjct: 282 CMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCL-----F 336

Query: 426 KVLPTYITFISVLS 439
           K+ P+     S+LS
Sbjct: 337 KLEPSDPGNYSLLS 350



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 145/287 (50%), Gaps = 29/287 (10%)

Query: 16  KLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGE 75
           +LF  M +RDVVSWN MI G +     G L EA  LFD MP +D V+WNT++ GY K GE
Sbjct: 2   RLFKVMDERDVVSWNSMIRGLLKV---GELSEACKLFDEMPMKDAVSWNTILDGYVKAGE 58

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN 135
           M +A  LF SMP RNVVSW+ M+SG+ + GD+  A   FDRMP ++  S + +VSG    
Sbjct: 59  MNKAFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVK 118

Query: 136 GELDEAARV---LVKCGSRCDGG---EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           G   +A R    + + G + D G     L     + ++G G+R      R          
Sbjct: 119 GLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIER---------- 168

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
                 +R+K ++   N+++  YAK G V  A  +F  M ++D  SWN M+ G       
Sbjct: 169 ------IRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHG 222

Query: 250 EEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           E+A  LF  M      PD +T  A++      G ++  + +F  M +
Sbjct: 223 EKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMER 269



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 178/360 (49%), Gaps = 38/360 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI G +K  E+++A KLFDEMP +D VSWN ++ GY+    +G + +A  LF+ MPER+ 
Sbjct: 18  MIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVK---AGEMNKAFGLFESMPERNV 74

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP-- 118
           V+W+T++SGY K G+ME A  LF+ MP +N+VSW  ++SG+   G   +AI  F++M   
Sbjct: 75  VSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEA 134

Query: 119 --GRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
               D  ++ ++++   ++G L    RV   + +   +C      V   N L+  Y + G
Sbjct: 135 GLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCS-----VNVSNALVDMYAKCG 189

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-- 231
           +V+ A  +F+ +             K+++VSWN M+   A  G    A ++F  M +   
Sbjct: 190 QVDRALSVFNGMS------------KKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGF 237

Query: 232 --DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELAL 284
             D  +   ++   +H   ++E    F  M       P    +  MV    + G L+ A 
Sbjct: 238 RPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAY 297

Query: 285 DFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLF-IQMQVEGEKPDRHTFSSILSMSSG 342
              + MP + N+V W +++  C  +     A ++     ++E   P  ++  S +  S+G
Sbjct: 298 RLVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAG 357


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 193/597 (32%), Positives = 316/597 (52%), Gaps = 43/597 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS-GFLEEAR----YLFDIM 55
           +ISG+ +      A ++FDEM    +    V ++  +++  S G L++ +    YL    
Sbjct: 216 LISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAG 275

Query: 56  PERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
              D +T  +++  Y K G++E A  +FN     NVV WN M+  + Q  D+A + E F 
Sbjct: 276 MSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFG 335

Query: 116 RM------PGRDSASL---SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166
           +M      P + +      +   +G I+ GE   +  +        +G E  +     LI
Sbjct: 336 QMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIK-------NGFESDMYVSGVLI 388

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
             Y +   +++ARK+ + +             KR++VSW SMI  Y +      A   F+
Sbjct: 389 DMYSKYRCLDKARKILEMLE------------KRDVVSWTSMIAGYVQHDFCEEALATFK 436

Query: 227 QMLE----RDTFSWNTMISGYIHVLDMEEA----SNLFVKMPHPDTLTWNAMVSGYAQIG 278
           +M +     D     +  S    +  M +     + ++V     D   WN +V+ YA+ G
Sbjct: 437 EMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCG 496

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
             E A   F+ +  K+ ++WN +I+G   ++ YE A+ +F++M   G K +  TF S +S
Sbjct: 497 RSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAIS 556

Query: 339 MSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
             + + D+  G Q+H    KT    +  + NALI++Y +CG+I +A++IF EM L +N V
Sbjct: 557 ALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSL-RNEV 615

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWN +I  C+ HG   EAL+LF  M+   + P  +TFI VL+AC+H GLVEEG  +FKSM
Sbjct: 616 SWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSM 675

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517
            N YG+ P  +H+A +VDI+GR G+L+ A   +  MP   +  +W  LL AC+VH N+E+
Sbjct: 676 SNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEI 735

Query: 518 AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            ++AA+ L+++EP +S  YVLL N YA  G+W + ++VR +MK   I+K  G SW++
Sbjct: 736 GELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIE 792



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 135/462 (29%), Positives = 220/462 (47%), Gaps = 42/462 (9%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------ 117
           N +I  YAK G + +A ++F  + +R+ VSW AM+SG+ Q G    A   + +M      
Sbjct: 82  NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVI 141

Query: 118 --PGRDSASLSALVSG-LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
             P   S+ LSA   G L   G +  A    V   + C   E  V   N LI  Y   G 
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQ---VYKQAFCS--ETFVG--NALIALYLGFGS 194

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LE 230
            + A ++F  + + CDR           V++N++I  +A+ G    A +IF++M    L 
Sbjct: 195 FKLAERVFCDM-LFCDR-----------VTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDF 286
            D  +  ++++    V D+++   L   +       D +T  +++  Y + G++E A D 
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F    + N+V WN M+       D   + ++F QMQ  G  P++ T+  IL   +    +
Sbjct: 303 FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQI 362

Query: 347 HLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
            LG QIH +  K     D+ ++  LI MY++   + +AR I E ++  ++VVSW +MI G
Sbjct: 363 ELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLE-KRDVVSWTSMIAG 421

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIE 464
              H F  EAL  FK M+   V P  I   S  SACA    + +G Q H +  V+ Y  +
Sbjct: 422 YVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             I  + +LV++  R GR E+A  L + +  + D+  W  L+
Sbjct: 482 ISI--WNTLVNLYARCGRSEEAFSLFREIDHK-DEITWNGLI 520



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 147/570 (25%), Positives = 258/570 (45%), Gaps = 84/570 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
           +I  Y K   + +AR++F E+  RD VSW  M+SGY + RG G  +EA  L+       +
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGY-AQRGLG--KEAFRLYSQMHWTAV 140

Query: 55  MPE---------------------------------RDCVTWNTVISGYAKTGEMEEALR 81
           +P                                   +    N +I+ Y   G  + A R
Sbjct: 141 IPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAER 200

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F  M   + V++N +ISG  Q G    A++ FD M       D  ++++L++     G+
Sbjct: 201 VFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGD 260

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           L +  ++   L+K G   D   +      +L+  Y + G +E A  +F            
Sbjct: 261 LQKGKQLHSYLLKAGMSFDYITE-----GSLLDLYVKCGDIETAHDIF------------ 303

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMI-----SGYIH 245
           N+  + N+V WN M++ Y +  D+  + EIF QM    +  + F++  ++     +G I 
Sbjct: 304 NLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIE 363

Query: 246 VLDMEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           +   E+  +L +K     D      ++  Y++   L+ A    + + ++++VSW SMIAG
Sbjct: 364 L--GEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAG 421

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-TKTVIPD 363
              +   E A+  F +MQ  G  PD    +S  S  +GI  +  G+QIH  V       D
Sbjct: 422 YVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           + I N L+ +YARCG   EA  +F E+   K+ ++WN +I G        +AL +F  M 
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLFREID-HKDEITWNGLISGFGQSRLYEQALMVFMKMS 540

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
                    TFIS +SA A+   +++G+Q H +++   +  E  + +  +L+ + G+ G 
Sbjct: 541 QAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVAN--ALISLYGKCGS 598

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           +EDA  +   M    ++  W  ++ +C  H
Sbjct: 599 IEDAKMIFSEMSLR-NEVSWNTIITSCSQH 627



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 160/353 (45%), Gaps = 43/353 (12%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------ 259
           N +I  YAK G V  AR++F+++  RD  SW  M+SGY      +EA  L+ +M      
Sbjct: 82  NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVI 141

Query: 260 PHP---------------------------------DTLTWNAMVSGYAQIGNLELALDF 286
           P P                                 +T   NA+++ Y   G+ +LA   
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERV 201

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F  M   + V++N++I+G       E A+++F +MQ+ G +PD  T +S+L+  + + DL
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261

Query: 347 HLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             G Q+H  + K  +  D     +L+ +Y +CG I  A  IF  +    NVV WN M+  
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF-NLGDRTNVVLWNLMLVA 320

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
                   ++ E+F  M++  + P   T+  +L  C   G +E G Q   S+  + G E 
Sbjct: 321 YGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQ-IHSLSIKNGFES 379

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            +     L+D+  ++  L+ A  +++ M  + D   W +++     H+  E A
Sbjct: 380 DMYVSGVLIDMYSKYRCLDKARKILE-MLEKRDVVSWTSMIAGYVQHDFCEEA 431


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 188/595 (31%), Positives = 307/595 (51%), Gaps = 66/595 (11%)

Query: 45  LEEARYLFDIMP--ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
             EAR LFD +P  +R+  TWN+++S YAK+G + +A  +F  MP R+ VSW  M+ G  
Sbjct: 79  FREARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLN 138

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCD--GGEDLVR 160
           + G    AI+ F  M     +     ++ ++ +    EA  V  K  S     G    V 
Sbjct: 139 RVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVP 198

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIP----------VNCDRGEGNVRFK---------RN 201
             N+++  YG+ G  E AR +F+++P          V+ D   G +            R 
Sbjct: 199 VANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRT 258

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS-------------------------- 235
           IVSWN++I  Y + G    A   F +ML   T +                          
Sbjct: 259 IVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVH 318

Query: 236 --------------WNTMISGYIHVLDMEEASNLFVK--MPHPDTLTWNAMVSGYAQIGN 279
                          N +IS Y     +E A  +  +  M   + +++ A++ GY ++G+
Sbjct: 319 AYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGD 378

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           ++ A + F  M  +++V+W +MI G E N   + A++LF  M   G +P+ +T +++LS+
Sbjct: 379 MKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSV 438

Query: 340 SSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            + +  L  G QIH    +++      ++N+++TMYAR G++  AR +F+ +   K  V+
Sbjct: 439 CASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVT 498

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           W +MI   A HG   +A+ LF+ M    V P  ITF+ VLSAC H G V+EG+++F+ + 
Sbjct: 499 WTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQ 558

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
           +++GI P + H+A +VD++ R G   +A + I+ MP EPD   WG+LL ACRVH N +LA
Sbjct: 559 DKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLA 618

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           ++AAE L+ ++P NS  Y  L N+Y+  GRW+DA ++    K  ++KK TG+SW 
Sbjct: 619 ELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWT 673



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 131/522 (25%), Positives = 212/522 (40%), Gaps = 138/522 (26%)

Query: 139 DEAARVLVKCGSRCDGGED------------LVRAY--NTLIVGYGQRGR-----VEEAR 179
           D  AR+L +C +  + G              L  AY  N L+  Y            EAR
Sbjct: 24  DHCARLLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREAR 83

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           +LFD+IP            +RN+ +WNS++  YAK+G +  AR +F +M ERD  SW  M
Sbjct: 84  RLFDEIPAA----------QRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVM 133

Query: 240 ISGYIHVLDMEEASNLFVKM------PHPDTLT--------------------------- 266
           + G   V    EA  +F+ M      P   TLT                           
Sbjct: 134 VVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGL 193

Query: 267 ------WNAMVSGYAQIGNLE-------------------------------LALDFFKR 289
                  N++++ Y + G+ E                               LAL  F+ 
Sbjct: 194 SSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFEN 253

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMSSGIVDLHL 348
           MP + +VSWN++IAG   N     A+  F +M       PD  T +S+LS  + +  + +
Sbjct: 254 MPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSI 313

Query: 349 GMQIHQMVTKTVIPDV-PINNALITMYARCGAIVEARIIFEEMKLL-------------- 393
           G Q+H  + ++ +P +  + NALI+MYA+ G++  AR + ++  +               
Sbjct: 314 GKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGY 373

Query: 394 ------------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
                             ++VV+W AMI G   +G   EA+ELF+ M      P   T  
Sbjct: 374 VKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVA 433

Query: 436 SVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           +VLS CA    +E G+Q H K++ +       + +  S+V +  R G L  A  +   + 
Sbjct: 434 AVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSN--SIVTMYARSGSLPWARRVFDRVH 491

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENST 534
           +  +   W +++ A   H   E A    E +++  V+P+  T
Sbjct: 492 WRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRIT 533


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 188/519 (36%), Positives = 286/519 (55%), Gaps = 27/519 (5%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSA-- 127
           YAK     +A R+F+ MPAR+ V+WNA+++G+ +NG    A+    RM   D     A  
Sbjct: 270 YAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVT 329

Query: 128 LVSGL--IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           LVS L    + +   A R +     R  G ++ V     ++  Y + G V+ ARK+FD +
Sbjct: 330 LVSVLPACADAQALGACREVHAFAVR-GGFDEQVNVSTAILDVYCKCGAVDSARKVFDGM 388

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
                         RN VSWN+MI  YA+ GD   A  +F++M+       +  +   +H
Sbjct: 389 Q------------DRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALH 436

Query: 246 VL-------DMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
                    +      L V++     +   NA+++ Y +    +LA   F  +  K  VS
Sbjct: 437 ACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVS 496

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WN+MI GC  N   E A++LF +MQ+E  KPD  T  SI+   + I D      IH    
Sbjct: 497 WNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSI 556

Query: 358 KTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           +  +  DV +  ALI MYA+CG +  AR +F   +  ++V++WNAMI G  SHG    A+
Sbjct: 557 RLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARD-RHVITWNAMIHGYGSHGSGKVAV 615

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
           ELF+ M+S   +P   TF+SVLSAC+HAGLV+EG+++F SM  +YG+EP +EH+ ++VD+
Sbjct: 616 ELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDL 675

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           +GR G+L +A   I+ MP EP  +V+GA+LGAC++H NVELA+ +A+ + ++EPE    +
Sbjct: 676 LGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYH 735

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           VLL N+YA+   W D   VR  M+   ++K  G+S V  
Sbjct: 736 VLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQL 774



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 129/485 (26%), Positives = 215/485 (44%), Gaps = 85/485 (17%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD----- 59
           Y K R    AR++FD MP RD V+WN +++GY  +   G  E A  +   M E D     
Sbjct: 270 YAKCRRPGDARRVFDRMPARDRVAWNALVAGYARN---GLAEAAVGMVVRMQEEDGERPD 326

Query: 60  CVTWNTVISG-----------------------------------YAKTGEMEEALRLFN 84
            VT  +V+                                     Y K G ++ A ++F+
Sbjct: 327 AVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFD 386

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            M  RN VSWNAMI G+ +NGD   A+  F RM G        S+ A +    + G LDE
Sbjct: 387 GMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDE 446

Query: 141 AARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
             RV   LV+ G      E  V   N LI  Y +  R + A ++FD++            
Sbjct: 447 GRRVHELLVRIGL-----ESNVNVMNALITMYCKCKRTDLAAQVFDELGY---------- 491

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
             +  VSWN+MI+   + G    A  +F +M    ++ D+F+  ++I     + D  +A 
Sbjct: 492 --KTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQAR 549

Query: 254 -----NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
                ++ + +   D     A++  YA+ G + +A   F     +++++WN+MI G  ++
Sbjct: 550 WIHGYSIRLHLDQ-DVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSH 608

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKT--VIPDV 364
              + A++LF +M+  G+ P+  TF S+LS  S  G+VD   G +    + +   + P +
Sbjct: 609 GSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVD--EGQEYFSSMKEDYGLEPGM 666

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
                ++ +  R G + EA    ++M +   +  + AM+G C  H     A E   + R 
Sbjct: 667 EHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEE--SAQRI 724

Query: 425 FKVLP 429
           F++ P
Sbjct: 725 FELEP 729



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 158/310 (50%), Gaps = 13/310 (4%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           P+ L   A+ + YA+      A   F RMP ++ V+WN+++AG   N   E A+ + ++M
Sbjct: 258 PEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRM 317

Query: 322 QVE-GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGA 379
           Q E GE+PD  T  S+L   +    L    ++H    +    + V ++ A++ +Y +CGA
Sbjct: 318 QEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGA 377

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           +  AR +F+ M+  +N VSWNAMI G A +G ATEAL LFK M    V  T ++ ++ L 
Sbjct: 378 VDSARKVFDGMQ-DRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALH 436

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           AC   G ++EGR+  + +V   G+E  +    +L+ +  +  R + A  +   + ++  +
Sbjct: 437 ACGELGFLDEGRRVHELLV-RIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYK-TR 494

Query: 500 AVWGALLGACRVHNNVELA--QVAAEALMKVEPENSTPYVLLYNMYADV-----GRWDDA 552
             W A++  C  + + E A    +   L  V+P++ T  V +    AD+      RW   
Sbjct: 495 VSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFT-LVSIIPALADISDPLQARWIHG 553

Query: 553 NEVRLLMKSN 562
             +RL +  +
Sbjct: 554 YSIRLHLDQD 563



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 99/203 (48%), Gaps = 6/203 (2%)

Query: 307 TNKDYEGAIKLFIQMQ-VEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDV 364
           +  D  GA+  F  M    G  P   TF+S+L + +   DL  G  +H Q+  + + P+ 
Sbjct: 201 SRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEA 260

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
               AL  MYA+C    +AR +F+ M   ++ V+WNA++ G A +G A  A+ +   M+ 
Sbjct: 261 LAATALANMYAKCRRPGDARRVFDRMP-ARDRVAWNALVAGYARNGLAEAAVGMVVRMQE 319

Query: 425 FK-VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
                P  +T +SVL ACA A  +   R+   +     G + ++    +++D+  + G +
Sbjct: 320 EDGERPDAVTLVSVLPACADAQALGACRE-VHAFAVRGGFDEQVNVSTAILDVYCKCGAV 378

Query: 484 EDAMDLIKGMPFEPDKAVWGALL 506
           + A  +  GM  + +   W A++
Sbjct: 379 DSARKVFDGMQ-DRNSVSWNAMI 400



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 15/152 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K   ++ AR LF+    R V++WN MI GY  S GSG  + A  LF+ M     
Sbjct: 570 LIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGY-GSHGSG--KVAVELFEEMKSSGK 626

Query: 61  V----TWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
           V    T+ +V+S  +  G ++E    F+SM         +  +  M+    + G +  A 
Sbjct: 627 VPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAW 686

Query: 112 EFFDRMPGRDSASLSALVSG---LIQNGELDE 140
            F  +MP     S+   + G   L +N EL E
Sbjct: 687 SFIQKMPMEPGISVYGAMLGACKLHKNVELAE 718


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 210/630 (33%), Positives = 332/630 (52%), Gaps = 82/630 (13%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS-----------SR---------- 40
           + G+   R M  A +LFDEM + D   WNVMI G+ S           SR          
Sbjct: 71  LRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADT 130

Query: 41  -----------GSGFLEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEALRLFNS 85
                      G   LEE + +  ++ +     D    N++IS Y K G   +A ++F  
Sbjct: 131 FTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEE 190

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSAL-VSGLIQNGEL 138
           MP R++VSWN+MISG+L  GD  +++  F  M      P R S ++SAL     + + ++
Sbjct: 191 MPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFS-TMSALGACSHVYSPKM 249

Query: 139 DEAARVLVKCG---SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
            +     + C    SR + G+ +V    +++  Y + G V  A ++F+ +          
Sbjct: 250 GKE----IHCHAVRSRIETGDVMV--MTSILDMYSKYGEVSYAERIFNGM---------- 293

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
              +RNIV+WN MI CYA+ G V  A   F++M E++    + + S     +++  AS +
Sbjct: 294 --IQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITS-----INLLPASAI 346

Query: 256 FV-KMPH---------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
              +  H         P  +   A++  Y + G L+ A   F RM +KN++SWNS+IA  
Sbjct: 347 LEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAY 406

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDV 364
             N     A++LF ++      PD  T +SIL   +  + L  G +IH  + K+    + 
Sbjct: 407 VQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNT 466

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            I N+L+ MYA CG + +AR  F  + LLK+VVSWN++I   A HGF   ++ LF  M +
Sbjct: 467 IILNSLVHMYAMCGDLEDARKCFNHI-LLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIA 525

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
            +V P   TF S+L+AC+ +G+V+EG ++F+SM  EYGI+P IEH+  ++D++GR G   
Sbjct: 526 SRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFS 585

Query: 485 DAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
            A   ++ MPF P   +WG+LL A R H ++ +A+ AAE + K+E +N+  YVLL NMYA
Sbjct: 586 AAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYA 645

Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + GRW+D N ++LLM+S  I + +  S V+
Sbjct: 646 EAGRWEDVNRIKLLMESKGISRTSSRSTVE 675



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 126/468 (26%), Positives = 216/468 (46%), Gaps = 84/468 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           +IS Y+K      A K+F+EMP+RD+VSWN MISGY+ + G GF   +  LF  M     
Sbjct: 171 LISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYL-ALGDGF--SSLMLFKEMLKCGF 227

Query: 56  -PER----------------------------------DCVTWNTVISGYAKTGEMEEAL 80
            P+R                                  D +   +++  Y+K GE+  A 
Sbjct: 228 KPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAE 287

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
           R+FN M  RN+V+WN MI  + +NG V +A   F +M  ++      L   +I +  L  
Sbjct: 288 RIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQN-----GLQPDVITSINLLP 342

Query: 141 AARVLVKCGSRCDGGEDLVRAY-------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
           A+ +L     R   G  + R +         LI  YG+ G+++ A  +FD++        
Sbjct: 343 ASAIL---EGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMA------- 392

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDM 249
                ++N++SWNS+I  Y + G   SA E+F+++    L  D+ +  +++  Y   L +
Sbjct: 393 -----EKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSL 447

Query: 250 EEASNL---FVKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
            E   +    VK  +  +T+  N++V  YA  G+LE A   F  +  K++VSWNS+I   
Sbjct: 448 SEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAY 507

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKT--VI 361
             +     ++ LF +M      P++ TF+S+L+    SG+VD   G +  + + +   + 
Sbjct: 508 AVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVD--EGWEYFESMKREYGID 565

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           P +     ++ +  R G    A+   EEM  +     W +++    +H
Sbjct: 566 PGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNH 613


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 211/658 (32%), Positives = 327/658 (49%), Gaps = 126/658 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++S   K   +  ARKLFD MP RD  SWN MI  Y +S   G L EAR LF   P R C
Sbjct: 47  VLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANS---GRLNEARKLFYETPIRSC 103

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSW---------------------N 95
           +TW+++ISGY + G   EAL LF  M       N  +W                     +
Sbjct: 104 ITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAH 163

Query: 96  AMISGFLQNGDVANAI--------------EFFDRMPGRDSASL-SALVSGLIQNGELDE 140
           A+ + F  N  V   +                F+  P + +  L +A+V+G  QNG+  +
Sbjct: 164 AIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHK 223

Query: 141 AAR-------------------VLVKCG--SRCDGGEDL------------VRAYNTLIV 167
           A                     +L  CG  S C  G  +            V   + L+ 
Sbjct: 224 AIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVD 283

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y + G +  AR++ + + V+            + VSWNSMI+   + G    A  +F  
Sbjct: 284 MYSKCGDLSNARRMLETMEVD------------DPVSWNSMIVGCVRQGLGEEALSLFRI 331

Query: 228 MLER----DTFSWNTMISGYIHVLDMEEA---SNLFVKMP-HPDTLTWNAMVSGYAQIGN 279
           M  R    D F++ ++++ +  V+DM  A    +L VK       L  NA+V  YA+ G 
Sbjct: 332 MHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGY 391

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
            + A D F++M  K+++SW S++ GC  N  YE A++LF +M++ G  PD+   +++LS 
Sbjct: 392 FDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSA 451

Query: 340 SSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            + +  L  G Q+H    K+ +   + ++N+L++MYA+CG I +A  +F+ M+ +++V++
Sbjct: 452 CAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSME-IQDVIT 510

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           W A+I G A +G   +                            HAGLVE GR +F+SM 
Sbjct: 511 WTALIVGYAQNGRGRD----------------------------HAGLVEHGRSYFQSME 542

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
             YGI+P  EH+A ++D++GR G+L +A +L+  M  +PD  VW ALL ACRVH NVEL 
Sbjct: 543 EVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELG 602

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           + AA  L ++EP+N+ PYVLL N+Y+  G+W++A + R LMK   + K  G SW++ S
Sbjct: 603 ERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMS 660



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 141/485 (29%), Positives = 221/485 (45%), Gaps = 56/485 (11%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N V+S  +K G +++A +LF+ MP R+  SWN MI  +  +G +  A + F   P R   
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCI 104

Query: 124 SLSALVSGLIQNGELDEA-------------------ARVLVKCGSRC---DGGEDLVRA 161
           + S+L+SG  + G   EA                     VL  C        G +    A
Sbjct: 105 TWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHA 164

Query: 162 YNT-----------LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
             T           L+  Y +   + EA  LF+  P            KRN V W +M+ 
Sbjct: 165 IKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPD-----------KRNHVLWTAMVT 213

Query: 211 CYAKAGDVVSAREIFEQM----LERDTFSWNTMIS--GYIHVLDM-EEASNLFVKMPH-P 262
            Y++ GD   A E F  M    +E + F++ ++++  G I       +     V+     
Sbjct: 214 GYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGA 273

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           +    +A+V  Y++ G+L  A    + M   + VSWNSMI GC      E A+ LF  M 
Sbjct: 274 NVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMH 333

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIV 381
           +   K D  T+ S+L+  S ++D+   M +H ++ KT       +NNAL+ MYA+ G   
Sbjct: 334 LRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFD 393

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
            A  +FE+M   K+V+SW +++ GC  +G   EAL LF  MR   + P  I   +VLSAC
Sbjct: 394 YAFDVFEKMT-DKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSAC 452

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
           A   ++E G+Q   + +   G+   +    SLV +  + G +EDA  +   M  + D   
Sbjct: 453 AELTVLEFGKQVHANFLKS-GLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQ-DVIT 510

Query: 502 WGALL 506
           W AL+
Sbjct: 511 WTALI 515



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 225/508 (44%), Gaps = 94/508 (18%)

Query: 124 SLSALVSGLIQNGELDEAARVLV-KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
           + S  V   +++ EL+   R  V  CG+     +      N ++    + GRV++ARKLF
Sbjct: 10  TFSRKVCHQLEHTELNHHIRRFVNSCGTVHSSSDS-----NWVLSNLSKCGRVDDARKLF 64

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
           D +P   DR E          SWN+MI  YA +G +  AR++F +   R   +W+++ISG
Sbjct: 65  DVMP---DRDE---------CSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISG 112

Query: 243 YIHVLDMEEASNLFVKMPH----PDTLTWNA----------------------------- 269
           Y       EA  LF +M +    P+  TW +                             
Sbjct: 113 YCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSN 172

Query: 270 ------MVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
                 +V  YA+   +  A   F+  P K N V W +M+ G   N D   AI+ F  M+
Sbjct: 173 AFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMR 232

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIV 381
            EG + ++ TF SIL+    I     G Q+H  + ++    +V + +AL+ MY++CG + 
Sbjct: 233 GEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLS 292

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
            AR + E M+ + + VSWN+MI GC   G   EAL LF+ M    +     T+ SVL+  
Sbjct: 293 NARRMLETME-VDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCF 351

Query: 442 A-----------HAGLVEEGRQHFK----SMVNEYGIEPRIEH---------------FA 471
           +           H+ +V+ G + +K    ++V+ Y      ++               + 
Sbjct: 352 SFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWT 411

Query: 472 SLVDIVGRHGRLEDAMDL---IKGMPFEPDKAVWGALLGACRVHNNVELA-QVAAEALMK 527
           SLV     +G  E+A+ L   ++ M   PD+ V  A+L AC     +E   QV A  L  
Sbjct: 412 SLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKS 471

Query: 528 VEPENSTPYVLLYNMYADVGRWDDANEV 555
               + +    L +MYA  G  +DAN+V
Sbjct: 472 GLGSSLSVDNSLVSMYAKCGCIEDANKV 499


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 217/713 (30%), Positives = 339/713 (47%), Gaps = 142/713 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS-------------GFLEE 47
           ++  Y K  ++ +AR++FD+MP+RDVV+WN MI+G   S                G    
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPS 229

Query: 48  ARYLFDIMP-------------------ERD--CVTWNTVISGYAKTGEMEEALRLFNSM 86
           +  L ++ P                    RD      N +I  Y+K G+++ A R+F+ M
Sbjct: 230 SVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM 289

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMP-GRDSASLSALVSGLIQNGELDEAAR-- 143
             ++ VSW  M++G+  NG     +E FD+M  G    +  + VS  +   E  +  +  
Sbjct: 290 VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGK 349

Query: 144 --------------VLV---------KCGSRCDG--------GEDLVRAYNTLIVGYGQR 172
                         +LV         KCG             G DLV A++ +I    Q 
Sbjct: 350 EIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLV-AWSAIIAALVQT 408

Query: 173 GRVEEARKLFDKI-----------------------------PVNCDRGEGNVRFKRNIV 203
           G  EEA  LF ++                              ++C   + ++    ++ 
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADM--DSDLS 466

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP--- 260
           +  +++  YAK G   +A   F +M  RD  +WN++I+GY  + D   A ++F K+    
Sbjct: 467 TGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSA 526

Query: 261 -HPDTLTW-----------------------------------NAMVSGYAQIGNLELAL 284
            +PD  T                                    NA++  YA+ G+L  A 
Sbjct: 527 INPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAE 586

Query: 285 DFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
             F +    K+ V+WN +IA    N   + AI  F QM++E   P+  TF S+L  ++ +
Sbjct: 587 FLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYL 646

Query: 344 VDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
                GM  H  + +   + +  + N+LI MYA+CG +  +  +F EM   K+ VSWNAM
Sbjct: 647 AAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDH-KDTVSWNAM 705

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           + G A HG    A+ LF  M+  +V    ++F+SVLSAC HAGLVEEGR+ F SM ++Y 
Sbjct: 706 LSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYH 765

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           I+P +EH+A +VD++GR G  ++ +  IK MP EPD  VWGALLG+CR+H+NV+L +VA 
Sbjct: 766 IKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVAL 825

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           + L+K+EP N   +V+L ++YA  GRW DA + R  M    +KK  G SWV+ 
Sbjct: 826 DHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVEL 878



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 167/649 (25%), Positives = 273/649 (42%), Gaps = 139/649 (21%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRG------------SGFLEEARYLFDIMP----- 56
           AR +FD  P    + WN MI  Y  S+                LE  +Y F  +      
Sbjct: 82  ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141

Query: 57  -------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM 97
                              ERD      ++  Y+K G+++ A  +F+ MP R+VV+WNAM
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAM 201

Query: 98  ISGFLQNGDVANAIEFFDRMP--GRDSASLSAL-----------------VSGLIQNGEL 138
           I+G  Q+ D   A++FF  M   G + +S+S L                 + G +   + 
Sbjct: 202 IAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF 261

Query: 139 DEA-ARVLVKCGSRCDGGEDLVR------------AYNTLIVGYGQRGRVEEARKLFDKI 185
             A +  L+   S+C G  D+ R            ++ T++ GY   G   E  +LFDK+
Sbjct: 262 SSAVSNGLIDLYSKC-GDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM 320

Query: 186 ---------------------PVNCDRGEG------NVRFKRNIVSWNSMIMCYAKAGDV 218
                                 ++ ++G+         R   +I+    +++ YAK G+ 
Sbjct: 321 KLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGET 380

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTL------- 265
             A+++F  +  RD  +W+ +I+  +     EEA +LF +M      P+  TL       
Sbjct: 381 EKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPAC 440

Query: 266 --------------------------TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
                                     T  A+VS YA+ G    AL  F RM  +++V+WN
Sbjct: 441 ADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWN 500

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           S+I G     D   AI +F ++++    PD  T   ++   + + DL  G  IH ++ K 
Sbjct: 501 SLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKL 560

Query: 360 VI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
               D  + NALI MYA+CG++  A  +F +    K+ V+WN +I     +G A EA+  
Sbjct: 561 GFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISS 620

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  MR     P  +TF+SVL A A+     EG   F + + + G         SL+D+  
Sbjct: 621 FHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYA 679

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
           + G+L+ +  L   M  + D   W A+L    VH + + A +A  +LM+
Sbjct: 680 KCGQLDYSEKLFNEMDHK-DTVSWNAMLSGYAVHGHGDRA-IALFSLMQ 726



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 142/569 (24%), Positives = 235/569 (41%), Gaps = 100/569 (17%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP-------------------- 87
           AR +FD  P    + WN++I  Y ++ +  EAL ++  M                     
Sbjct: 82  ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141

Query: 88  -------------------ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSAL 128
                               R+V     ++  + + GD+  A E FD+MP RD  + +A+
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAM 201

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
           ++GL Q+ +  EA         +  G E    +   L  G  +   +E  R +   +   
Sbjct: 202 IAGLSQSEDPCEAVDFFR--SMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYV--- 256

Query: 189 CDRGEGNVRFKRNIVSW--NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246
                    F+R+  S   N +I  Y+K GDV  AR +F+QM+++D  SW TM++GY H 
Sbjct: 257 ---------FRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHN 307

Query: 247 LDMEEASNLFVKMP---------------------------------------HPDTLTW 267
               E   LF KM                                          D L  
Sbjct: 308 GCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVA 367

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
             ++  YA+ G  E A   F  +  ++LV+W+++IA        E A+ LF +MQ +  K
Sbjct: 368 TPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMK 427

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARII 386
           P+R T  SIL   + +  L LG  IH    K  +  D+    AL++MYA+CG    A   
Sbjct: 428 PNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTT 487

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F  M   +++V+WN++I G A  G    A+++F  +R   + P   T + V+ ACA    
Sbjct: 488 FNRMS-SRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLND 546

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +++G      ++ + G E       +L+D+  + G L  A  L     F  D+  W  ++
Sbjct: 547 LDQGTC-IHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVII 605

Query: 507 GACRVHNNVELAQVAAEALMKVEPENSTP 535
            A   + +   A+ A  +  ++  EN  P
Sbjct: 606 AAYMQNGH---AKEAISSFHQMRLENFHP 631



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 123/247 (49%), Gaps = 11/247 (4%)

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +++ Y+     +LA   F   P  + + WNSMI     +K Y  A++++  M  +G +PD
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFE 388
           ++TF+ +L   +G ++L  G+  H  + +  +  DV I   L+ MY++ G +  AR +F+
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
           +M   ++VV+WNAMI G +      EA++ F+SM+   V P+ ++ +++         +E
Sbjct: 189 KMP-KRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIE 247

Query: 449 EGRQHFKSMVNEYGIEPRIEHFAS--LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             R      ++ Y          S  L+D+  + G ++ A  +   M  + D   WG ++
Sbjct: 248 LCRS-----IHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMM 301

Query: 507 GACRVHN 513
            A   HN
Sbjct: 302 -AGYAHN 307


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 198/549 (36%), Positives = 286/549 (52%), Gaps = 66/549 (12%)

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALV 129
           G +  AL LF S+   N   WN MI G   +     AI+F+ RM       +S +   L+
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 130 SGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
               + G   E  ++   ++K G   D        + +LI  Y Q G +  A  +F K  
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDP-----FVHTSLINMYAQNGELGYAELVFSKSS 194

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246
           +            R+ VS+ ++I  Y   G +  AR +FE++  RD  SWN MI+GY   
Sbjct: 195 L------------RDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQS 242

Query: 247 LDMEEASNLFVKM------PHPDTL--------------------TW------------- 267
              EEA   F +M      P+  T+                    +W             
Sbjct: 243 GRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLV 302

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           NA++  Y++ G+L+ A D F+ + +K+++SWN MI G      Y+ A+ LF +MQ    +
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVE 362

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI--PDVPINNALITMYARCGAIVEARI 385
           P+  TF SIL   + +  L LG  IH  + K  +   +  +  +LI MYA+CG I  A+ 
Sbjct: 363 PNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQ 422

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F  MK  K++ SWNAMI G A HG A  ALELF+ MR     P  ITF+ VLSAC+HAG
Sbjct: 423 VFAGMKP-KSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAG 481

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           LVE GRQ F SMV +Y I P+++H+  ++D++GR G  ++A  L+K M  +PD A+WG+L
Sbjct: 482 LVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSL 541

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           LGACRVH NVEL + AA+ L ++EPEN   YVLL N+YA  GRWDD   +R  +    +K
Sbjct: 542 LGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMK 601

Query: 566 KPTGYSWVD 574
           K  G S ++
Sbjct: 602 KVPGCSSIE 610



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 210/474 (44%), Gaps = 80/474 (16%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISG-YISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++ A  LF+ + Q +   WN MI G  +SS   G ++    +     E +  T+  ++  
Sbjct: 82  LSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKS 141

Query: 70  YAKTGEMEEALRLFNSMPARNVVS----WNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
            AK G  +E  ++   +    + S      ++I+ + QNG++  A   F +   RD+ S 
Sbjct: 142 CAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSF 201

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           +AL++G    G LD+A R+  +   R     D V ++N +I GY Q GR EEA   F ++
Sbjct: 202 TALITGYTLRGCLDDARRLFEEIPVR-----DAV-SWNAMIAGYAQSGRFEEALAFFQEM 255

Query: 186 P--------------VNCDRGEGNVRFKRNIVSW-------------NSMIMCYAKAGDV 218
                          ++     G++     + SW             N++I  Y+K GD+
Sbjct: 256 KRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDL 315

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT-------- 266
             AR++FE + E+D  SWN MI GY H+   +EA  LF KM      P+ +T        
Sbjct: 316 DKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPAC 375

Query: 267 ----------------------------WNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
                                       W +++  YA+ GN+E A   F  M  K+L SW
Sbjct: 376 AYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSW 435

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           N+MI+G   +     A++LF QM+ EG +PD  TF  +LS  S    + LG Q    + +
Sbjct: 436 NAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVE 495

Query: 359 --TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
              + P +     +I +  R G   EA  + + M++  +   W +++G C  HG
Sbjct: 496 DYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHG 549



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 158/399 (39%), Gaps = 76/399 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+GY  R  +  AR+LF+E+P RD VSWN MI+GY     SG  EEA   F  M   + 
Sbjct: 204 LITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQ---SGRFEEALAFFQEMKRANV 260

Query: 61  V--------------------------TW-------------NTVISGYAKTGEMEEALR 81
                                      +W             N +I  Y+K G++++A  
Sbjct: 261 APNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARD 320

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           LF  +  ++++SWN MI G+        A+  F +M       +  +  +++      G 
Sbjct: 321 LFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGA 380

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           LD    +      +  G  +    + +LI  Y + G +E A+++F  +            
Sbjct: 381 LDLGKWIHAYIDKKFLGLTN-TSLWTSLIDMYAKCGNIEAAKQVFAGMK----------- 428

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
             +++ SWN+MI   A  G    A E+F QM     E D  ++  ++S   H   +E   
Sbjct: 429 -PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGR 487

Query: 254 NLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCET 307
             F  M       P    +  M+    + G  + A    K M  K +   W S++  C  
Sbjct: 488 QCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRV 547

Query: 308 NKDYE----GAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           + + E     A  LF   ++E E P  +   S +  ++G
Sbjct: 548 HGNVELGEFAAKHLF---ELEPENPGAYVLLSNIYATAG 583


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 208/685 (30%), Positives = 338/685 (49%), Gaps = 124/685 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY-------------ISSRGSGFLEE 47
           M++GY K   ++ A +LF  MP+RDV SWN ++SGY             +S R SG    
Sbjct: 101 MMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLP 160

Query: 48  ARYLFDI-MPERDCVTWNTV-----------------------ISGYAKTGEMEEALRLF 83
             + F   M     + W+ V                       +  + + G ++ A + F
Sbjct: 161 NAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQF 220

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
           + +    V   N+M++G+ ++  V +A+E F+ MP RD  S + +VS L Q+G   EA  
Sbjct: 221 SQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALS 280

Query: 144 VLVKC---GSRCDG------------------GEDL----VRAY--------NTLIVGYG 170
           V V     G R D                   G+ L    +R+         + ++  Y 
Sbjct: 281 VAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYA 340

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-- 228
           + G  +EAR++F  +              RN VSW  +I  + + G    + E+F QM  
Sbjct: 341 KCGCFKEARRVFSSLR------------DRNTVSWTVLIGGFLQYGCFSESLELFNQMRA 388

Query: 229 --LERDTFSWNTMISGYIHVLDM-----------------------------------EE 251
             +  D F+  T+ISG  + +DM                                   + 
Sbjct: 389 ELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQN 448

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           A ++F  M   D ++W  M++ Y+Q+GN+  A +FF  M  +N+++WN+M+     +   
Sbjct: 449 AESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAE 508

Query: 312 EGAIKLFIQMQVEGEK-PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNA 369
           E  +K++  M  E +  PD  T+ ++    + +    LG QI     K  +I D  + NA
Sbjct: 509 EDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNA 568

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           +ITMY++CG I EAR IF+ +   K++VSWNAMI G + HG   +A+E+F  M      P
Sbjct: 569 VITMYSKCGRISEARKIFDFLS-RKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKP 627

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
            YI++++VLS+C+H+GLV+EG+ +F  +  ++ + P +EHF+ +VD++ R G L +A +L
Sbjct: 628 DYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNL 687

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
           I  MP +P   VWGALL AC+ H N ELA++AA+ L  ++  +S  Y+LL  +YAD G+ 
Sbjct: 688 IDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKS 747

Query: 550 DDANEVRLLMKSNNIKKPTGYSWVD 574
            D+ +VR LM+   IKK  GYSW++
Sbjct: 748 VDSAQVRKLMRDKGIKKNPGYSWME 772



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 148/565 (26%), Positives = 242/565 (42%), Gaps = 106/565 (18%)

Query: 30  NVMISGYISSRGSGFLEEARYLF--DIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP 87
           N ++  Y+S    G L +AR L   DI  E + +T N +++GYAK G + +A  LF  MP
Sbjct: 67  NTLLHAYLSC---GALPDARGLLRGDI-TEPNVITHNIMMNGYAKLGSLSDAEELFGRMP 122

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
            R+V SWN ++SG+ Q+G   +A+E F  M     +  +A   G             +  
Sbjct: 123 RRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGC-----------AMKS 171

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF--------- 198
           CG+   G  ++      L+  +G +G  + A  + D   V C    G V F         
Sbjct: 172 CGAL--GWHEVALQLLGLLTKFGFQGDPDVATGIVDMF-VRC----GAVDFASKQFSQIE 224

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK 258
           +  +   NSM+  YAK+  V  A E+FE M ERD  SWN M+S         EA ++ V 
Sbjct: 225 RPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVD 284

Query: 259 M---------------------------------------PHPDTLTWNAMVSGYAQIGN 279
           M                                       P  D    +AMV  YA+ G 
Sbjct: 285 MHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGC 344

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
            + A   F  +  +N VSW  +I G      +  +++LF QM+ E    D+   ++I+S 
Sbjct: 345 FKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISG 404

Query: 340 SSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMK------- 391
            S  +D+ L  Q+H +  K+     V I+N+LI+MYA+CG +  A  IF  M+       
Sbjct: 405 CSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSW 464

Query: 392 -----------------------LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK-V 427
                                    +NV++WNAM+G    HG   + L+++ +M + K V
Sbjct: 465 TGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDV 524

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
           +P ++T++++   CA  G  + G Q     V + G+        +++ +  + GR+ +A 
Sbjct: 525 IPDWVTYVTLFRGCADMGANKLGDQITGHTV-KVGLILDTSVMNAVITMYSKCGRISEAR 583

Query: 488 DLIKGMPFEPDKAVWGALLGACRVH 512
            +   +    D   W A++     H
Sbjct: 584 KIFDFLS-RKDLVSWNAMITGYSQH 607



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 150/315 (47%), Gaps = 39/315 (12%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFV-KMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
           L    F  NT++  Y+    + +A  L    +  P+ +T N M++GYA++G+L  A + F
Sbjct: 59  LASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGSLSDAEELF 118

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK-PDRHTFSSILSMSSGIVDL 346
            RMP++++ SWN++++G   +  +  A++ F+ M+  G+  P+  TF   +  S G +  
Sbjct: 119 GRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMK-SCGALGW 177

Query: 347 H-LGMQIHQMVTKTVIPDVP-INNALITMYARCGAI---------VEARIIFEEMKLL-- 393
           H + +Q+  ++TK      P +   ++ M+ RCGA+         +E   +F    +L  
Sbjct: 178 HEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAG 237

Query: 394 -------------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
                              ++VVSWN M+   +  G A EAL +   M +  V     T+
Sbjct: 238 YAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTY 297

Query: 435 ISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
            S L+ACA    +  G+Q H + + +   I+P +   +++V++  + G  ++A  +   +
Sbjct: 298 TSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVA--SAMVELYAKCGCFKEARRVFSSL 355

Query: 494 PFEPDKAVWGALLGA 508
             + +   W  L+G 
Sbjct: 356 R-DRNTVSWTVLIGG 369



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 122/247 (49%), Gaps = 28/247 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I+ Y K   +++ARK+FD + ++D+VSWN MI+GY S  G G  ++A  +FD M ++  
Sbjct: 569 VITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGY-SQHGMG--KQAIEIFDDMLKKGA 625

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
             D +++  V+S  + +G ++E    F+ +   + VS     ++ M+    + G++  A 
Sbjct: 626 KPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAK 685

Query: 112 EFFDRMPGRDSASL-SALVSGLIQNG--ELDE-AARVLVKCGSRCDGGEDLVRAYNTLIV 167
              D MP + +A +  AL+S    +G  EL E AA+ L    S   GG      Y  L  
Sbjct: 686 NLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGG------YMLLAK 739

Query: 168 GYGQRGR---VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
            Y   G+     + RKL     +  + G   +  K  +  + +  + + +   V++ RE 
Sbjct: 740 IYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQ---VIAIREK 796

Query: 225 FEQMLER 231
            ++++E+
Sbjct: 797 LDELMEK 803


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 208/629 (33%), Positives = 342/629 (54%), Gaps = 77/629 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-------D 53
           +++ Y    +++ +R  FD++PQ+DV +WN MIS Y+    +G   EA   F       +
Sbjct: 157 LVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVH---NGHFHEAIGCFYQLLLVSE 213

Query: 54  IMPE--------RDCVT-----------------WNTVISG-----YAKTGEMEEALRLF 83
           I P+        + C T                 WN  ++      Y++ G    A  LF
Sbjct: 214 IRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 273

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFD--RMPG--RDSASLSALVSGLIQNGELD 139
           + MP R++ SWNAMISG +QNG+ A A++  D  R+ G   +  ++ +++    Q G++ 
Sbjct: 274 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIS 333

Query: 140 EAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            A  +   ++K G   D     +   N LI  Y + G +E+ARK F ++           
Sbjct: 334 TAMLIHLYVIKHGLEFD-----LFVSNALINMYAKFGNLEDARKAFQQM----------- 377

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA 252
            F  ++VSWNS+I  Y +  D V+A   F +M     + D  +  ++ S      D + +
Sbjct: 378 -FITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNS 436

Query: 253 SNL--FVKMP---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
            ++  F+        D +  NA+V  YA++G L+ A   F+ +  K+++SWN++I G   
Sbjct: 437 RSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQ 496

Query: 308 NKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVP 365
           N     AI+++  M+   E  P++ T+ SIL   + +  L  GM+IH  V KT +  DV 
Sbjct: 497 NGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVF 556

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           +   LI +Y +CG +V+A  +F ++   ++ V+WNA+I     HG A + L+LF  M   
Sbjct: 557 VATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDE 615

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            V P ++TF+S+LSAC+H+G VEEG+  F+ M  EYGI+P ++H+  +VD++GR G LE 
Sbjct: 616 GVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEM 674

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A   IK MP +PD ++WGALLGACR+H N+EL + A++ L +V+ +N   YVLL N+YA+
Sbjct: 675 AYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYAN 734

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           VG+W+  ++VR L +   +KK  G+S ++
Sbjct: 735 VGKWEGVDKVRSLARERGLKKTPGWSTIE 763


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 212/714 (29%), Positives = 346/714 (48%), Gaps = 143/714 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+ Y++  ++  AR LF EM   DVV+WNVMISG+   RG   +    Y F++      
Sbjct: 267 VINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGH-GKRGCETVA-IEYFFNMRKSSVK 324

Query: 61  VTWNTV--------------------------------------ISGYAKTGEMEEALRL 82
            T +T+                                      +S Y+K  +ME A ++
Sbjct: 325 STRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKV 384

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGEL 138
           F ++  +N V WNAMI G+  NG+    +E F  M       D  + ++L+S    + +L
Sbjct: 385 FEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDL 444

Query: 139 DEAAR----------------------VLVKCGSRCDGGEDLVR-------AYNTLIVGY 169
           +  ++                      +  KCG+  D  +   R        +NT+I  Y
Sbjct: 445 EMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSY 504

Query: 170 GQRGRVEEARKLFDKIPV---------------NCDRGEGNVRFK------------RNI 202
            Q     EA  LF ++ +                C    G  + K            R++
Sbjct: 505 VQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDL 564

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM--- 259
            + +S+I  Y+K G +  AR++F  + E    S N +I+GY    ++EEA  LF +M   
Sbjct: 565 HTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTR 623

Query: 260 -PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ-------------------------- 292
             +P  +T+  +V    +  +L L   F  ++ +                          
Sbjct: 624 GVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTE 683

Query: 293 -----------KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
                      K++V W  M++G   N  YE A+K + +M+ +G  PD+ TF ++L + S
Sbjct: 684 ACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCS 743

Query: 342 GIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +  L  G  IH ++       D   +N LI MYA+CG +  +  +F+EM+   NVVSWN
Sbjct: 744 VLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWN 803

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           ++I G A +G+A +AL++F SMR   ++P  ITF+ VL+AC+HAG V +GR+ F+ M+ +
Sbjct: 804 SLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQ 863

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           YGIE R++H A +VD++GR G L++A D I+    +PD  +W +LLGACR+H +    ++
Sbjct: 864 YGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEI 923

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +AE L+++EP+NS+ YVLL N+YA  G W+ AN +R +M+   +KK  GYSW+D
Sbjct: 924 SAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWID 977



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 176/712 (24%), Positives = 300/712 (42%), Gaps = 147/712 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++  Y K   ++ AR++F+ +   + V W  + SGY+    +G  EEA  +F+ M +   
Sbjct: 201 LVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVK---AGLPEEAVLVFERMRDEGH 257

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
             D + + TVI+ Y + G++++A  LF  M + +VV+WN MISG  + G    AIE+F  
Sbjct: 258 RPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFN 317

Query: 117 MPGRD----SASLSALVS--GLIQNGELD-----EAARV-----------LVKCGSRCDG 154
           M         ++L +++S  G++ N +L      EA ++           LV   S+C+ 
Sbjct: 318 MRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEK 377

Query: 155 GEDLVRAY-----------NTLIVGYGQRGRVEEARKLF-------------------DK 184
            E   + +           N +I GY   G   +  +LF                     
Sbjct: 378 MEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLST 437

Query: 185 IPVNCDRGEGNV--------RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
              + D   G+         +  +N+   N+++  YAK G +  AR+IFE+M +RD  +W
Sbjct: 438 CAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTW 497

Query: 237 NTMISGYIHVLDMEEASNLFVKMP------------------------------------ 260
           NT+I  Y+   +  EA +LF +M                                     
Sbjct: 498 NTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVK 557

Query: 261 ---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                D  T ++++  Y++ G ++ A   F  +P+ ++VS N++IAG   N + E A+ L
Sbjct: 558 CGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQN-NLEEAVVL 616

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP--INNALITMYA 375
           F +M   G  P   TF++I+        L LG Q H  +TK         +  +L+ MY 
Sbjct: 617 FQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYM 676

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
               + EA  +F E+   K++V W  M+ G + +GF  EAL+ +K MR   VLP   TF+
Sbjct: 677 NSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFV 736

Query: 436 SVLSACAHAGLVEEGRQ------HFKSMVNEYGIEPRIEHFA------------------ 471
           +VL  C+    + EGR       H    ++E      I+ +A                  
Sbjct: 737 TVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRR 796

Query: 472 -------SLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNVELAQVA 521
                  SL++   ++G  EDA+ +   M      PD+  +  +L AC     V   +  
Sbjct: 797 SNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKI 856

Query: 522 AEALM-KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
            E ++ +   E    +V    M   +GRW    E    +++ N+ KP    W
Sbjct: 857 FEMMIGQYGIEARVDHVAC--MVDLLGRWGYLQEADDFIEAQNL-KPDARLW 905



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 151/549 (27%), Positives = 264/549 (48%), Gaps = 41/549 (7%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-FLEEARYLFD--IMPERDCV 61
           Y K  +++ A K FD + ++DV +WN M+S Y S    G  L     LF+  I P +   
Sbjct: 105 YAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNK--F 161

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPA----RNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           T++ V+S  A+   +E   ++  SM      RN     A++  + +   +++A   F+ +
Sbjct: 162 TFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWI 221

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
              ++   + L SG ++ G  +EA  VLV    R +G      A+ T+I  Y + G++++
Sbjct: 222 VDPNTVCWTCLFSGYVKAGLPEEA--VLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKD 279

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           AR LF ++               ++V+WN MI  + K G    A E F  M +    S  
Sbjct: 280 ARLLFGEMS------------SPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTR 327

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTW---------NAMVSGYAQIGNLELALDFFK 288
           + +   +  + +    +L + + H + +           +++VS Y++   +E A   F+
Sbjct: 328 STLGSVLSAIGIVANLDLGL-VVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE 386

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            + +KN V WN+MI G   N +    ++LF+ M+  G   D  TF+S+LS  +   DL +
Sbjct: 387 ALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEM 446

Query: 349 GMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G Q H  ++ K +  ++ + NAL+ MYA+CGA+ +AR IFE M    N V+WN +IG   
Sbjct: 447 GSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDN-VTWNTIIGSYV 505

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
                +EA +LFK M    ++       S L AC H   + +G+Q    +  + G++  +
Sbjct: 506 QDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQ-VHCLSVKCGLDRDL 564

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
              +SL+D+  + G ++DA  +   +P E       AL+ A    NN+E A V  + ++ 
Sbjct: 565 HTGSSLIDMYSKCGIIKDARKVFSSLP-EWSVVSMNALI-AGYSQNNLEEAVVLFQEMLT 622

Query: 528 --VEPENST 534
             V P   T
Sbjct: 623 RGVNPSEIT 631



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 134/515 (26%), Positives = 238/515 (46%), Gaps = 84/515 (16%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++ K+RK+FDEMPQR  ++  +  + +  S   G   E R              N ++  
Sbjct: 57  KLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGIDSEGR------------LGNAIVDL 104

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGD----VANAIEFFDRMPGRDSASL 125
           YAK  ++  A + F+ +  ++V +WN+M+S +   G     + + +  F+     +  + 
Sbjct: 105 YAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTF 163

Query: 126 SALVSGLIQNGELDEAARV---LVKCG----SRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
           S ++S   +   ++   ++   ++K G    S C G          L+  Y +  R+ +A
Sbjct: 164 SIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGA---------LVDMYAKCDRISDA 214

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTF 234
           R++F+ I               N V W  +   Y KAG    A  +FE+M +     D  
Sbjct: 215 RRVFEWI------------VDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHL 262

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
           ++ T+I+ YI +  +++A  LF +M  PD + WN M+SG+ +                  
Sbjct: 263 AFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGK------------------ 304

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
                    GCET      AI+ F  M+    K  R T  S+LS    + +L LG+ +H 
Sbjct: 305 --------RGCETV-----AIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHA 351

Query: 355 MVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
              K  +  ++ + ++L++MY++C  +  A  +FE ++  KN V WNAMI G A +G + 
Sbjct: 352 EAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALE-EKNDVFWNAMIRGYAHNGESH 410

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           + +ELF  M+S        TF S+LS CA +  +E G Q F S++ +  +   +    +L
Sbjct: 411 KVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQ-FHSIIIKKKLAKNLFVGNAL 469

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           VD+  + G LEDA  + + M  + D   W  ++G+
Sbjct: 470 VDMYAKCGALEDARQIFERMC-DRDNVTWNTIIGS 503


>gi|414873978|tpg|DAA52535.1| TPA: hypothetical protein ZEAMMB73_896450 [Zea mays]
 gi|414873979|tpg|DAA52536.1| TPA: hypothetical protein ZEAMMB73_896450 [Zea mays]
          Length = 701

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 189/600 (31%), Positives = 301/600 (50%), Gaps = 93/600 (15%)

Query: 12  AKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF--DIMPERDCVTWNTVISG 69
           A AR + D+       ++  M++  +  R    L  A  LF       R       ++ G
Sbjct: 102 AAARAVLDDDETPGADAYAAMVASRLRERD---LTRAEALFGAAPAAARGLYLDTAMLDG 158

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           YAK G ++ A  LF++MP +NVV+W +M+SG+ + G V  A E FD MP R+  S     
Sbjct: 159 YAKAGRVDRARELFDAMPVKNVVTWTSMVSGYFRAGRVQEARELFDVMPERNDYS----- 213

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
                                           + T++ GY + G + EAR++FD++P   
Sbjct: 214 --------------------------------WTTVVQGYARNGMLREAREMFDRMP--- 238

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
                    +RN+V+W +M+  Y   G +  A E+F+ M ER+++SWN MISG++ +  +
Sbjct: 239 ---------QRNVVAWTAMVKAYVDCGQIQQAWELFDMMPERNSYSWNAMISGFLSIGKV 289

Query: 250 EEASNLFVKMPH---------------------------------PDTLTWNAMVSGYAQ 276
            EA  LF +MPH                                  DT  WNA+++ YA 
Sbjct: 290 AEAVQLFERMPHRHKNVVSWTTMVAGLANNGLACRAREFFDRMPAKDTAAWNAIITVYAN 349

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            G L  A   F  M  K+LV+W+++I     N+    A+ +F+ M+     P+  T  SI
Sbjct: 350 NGQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMFLLMRHSAVSPNIRTLISI 409

Query: 337 LSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           L +S   V++    QIH +V     + +  + NAL+TMY+R G ++ A   F+ ++  K+
Sbjct: 410 LVISESTVEVK---QIHGLVIALGFLSETSLGNALLTMYSRSGDLMSAWFAFKRLEQ-KD 465

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
            ++W +++   A HG    AL  F  M      P+  TF +VLSAC H GLV +GR+ FK
Sbjct: 466 AITWTSIVQAFADHGCGYHALLGFAQMLRHGYKPSSTTFTAVLSACRHVGLVGKGRKMFK 525

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE-PDKAVWGALLGACRVHNN 514
           S+ + YG+EP IEH++ LVD++GR G + +A +L+ GM     D+A+   LLGAC VHN 
Sbjct: 526 SIYHVYGLEPTIEHYSCLVDLLGRAGYVREAKELVDGMQQGMRDEAILATLLGACVVHNE 585

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           VE+A+   E L++ +P  +  Y LL N++A  G WD+   V  +M+ +  K+  G+S ++
Sbjct: 586 VEVAREVGEDLVRFDPSGTGGYRLLANVFASHGMWDETANVWKVMRGSKAKRTPGFSQIE 645



 Score =  224 bits (571), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 232/464 (50%), Gaps = 58/464 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+ GY K   + +AR+LFD MP ++VV+W  M+SGY  +   G ++EAR LFD+MPER+ 
Sbjct: 155 MLDGYAKAGRVDRARELFDAMPVKNVVTWTSMVSGYFRA---GRVQEARELFDVMPERND 211

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +W TV+ GYA+ G + EA  +F+ MP RNVV+W AM+  ++  G +  A E FD MP R
Sbjct: 212 YSWTTVVQGYARNGMLREAREMFDRMPQRNVVAWTAMVKAYVDCGQIQQAWELFDMMPER 271

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +S S +A++SG +  G++ EA ++  +   R       V ++ T++ G    G    AR+
Sbjct: 272 NSYSWNAMISGFLSIGKVAEAVQLFERMPHRHKN----VVSWTTMVAGLANNGLACRARE 327

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            FD++P             ++  +WN++I  YA  G +  A+ +F+ ML +D  +W+T+I
Sbjct: 328 FFDRMPA------------KDTAAWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTII 375

Query: 241 SGYIHVLDMEEASNLFVKMPH------------------------------------PDT 264
             Y       EA N+F+ M H                                     +T
Sbjct: 376 EAYSKNERKHEALNMFLLMRHSAVSPNIRTLISILVISESTVEVKQIHGLVIALGFLSET 435

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
              NA+++ Y++ G+L  A   FKR+ QK+ ++W S++     +     A+  F QM   
Sbjct: 436 SLGNALLTMYSRSGDLMSAWFAFKRLEQKDAITWTSIVQAFADHGCGYHALLGFAQMLRH 495

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVE 382
           G KP   TF+++LS    +  +  G ++ + +     + P +   + L+ +  R G + E
Sbjct: 496 GYKPSSTTFTAVLSACRHVGLVGKGRKMFKSIYHVYGLEPTIEHYSCLVDLLGRAGYVRE 555

Query: 383 ARIIFEEMKL-LKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           A+ + + M+  +++      ++G C  H     A E+ + +  F
Sbjct: 556 AKELVDGMQQGMRDEAILATLLGACVVHNEVEVAREVGEDLVRF 599


>gi|357114699|ref|XP_003559133.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 640

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 187/534 (35%), Positives = 287/534 (53%), Gaps = 27/534 (5%)

Query: 45  LEEARYLFDIMPE--RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           L  A  L+   PE  R       +++GYAK G +  A RLF+ M  R VV+W  M+  + 
Sbjct: 83  LPRAEALYRAAPEAARGPALDAVMLAGYAKAGRVHRARRLFDGMLTRGVVAWTCMVDAYC 142

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
           + G V+ A E FD MP R   S +A++ G  + G   EA  +  +   R       V ++
Sbjct: 143 RAGRVSEARELFDAMPERSVVSWTAMMHGYARAGMPREAREMFDRMPERN------VVSW 196

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
             ++  Y   G  ++A  LFD++P            +RN  SWN++I    +AG V  A 
Sbjct: 197 TVMVKAYADGGYFQDAMGLFDRMP------------QRNSYSWNAVISGSFRAGRVDEAV 244

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
            +FE+M  R+  SW  M++G      +  A   F  MP  D   WNAM++ YA  G +  
Sbjct: 245 RLFERMPHRNVVSWTAMVTGLAQNGRVSMAREFFDVMPCKDITAWNAMITAYANNGEMNE 304

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F  MP K+LVSWN++I G    +  + A  LF+ M      P+  T  S+L +S  
Sbjct: 305 ARRLFDSMPAKDLVSWNTVIDGYAKKELKDEASGLFLDMLRSAASPNSTTLISVLVISES 364

Query: 343 IVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +V++   +QIH + T   ++ +  + NAL+TMY+R G +  A + F+ ++  K+ ++W +
Sbjct: 365 MVEV---VQIHGLATTLGLLSETSLGNALLTMYSRIGDLPSAWLAFKRLEE-KDAITWTS 420

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI   A+HG A+ AL+ F  M      P+  TF +VLSAC+HAGLVEEG+  F+S+ + Y
Sbjct: 421 MIQAFANHGHASYALQAFAQMLEHGKNPSSTTFTAVLSACSHAGLVEEGKSVFRSIRHVY 480

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE-PDKAVWGALLGACRVHNNVELAQV 520
           G+E  IEH+  L+DI+GR G + +AMD++  MP +  D A+   LLGAC +H  V+ A+ 
Sbjct: 481 GLERTIEHYTCLIDILGRAGNMREAMDVVNAMPPDICDDAILRTLLGACMMHKEVDAARE 540

Query: 521 AAEALMKVEPENSTP-YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
             E L K +P  S   Y++L N+ A  G WD+  +V   MK +N++K  G S +
Sbjct: 541 VGEVLAKSDPSGSGGYYMVLANVLASGGLWDEMADVWKAMKGSNVRKTPGVSQI 594



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 144/457 (31%), Positives = 222/457 (48%), Gaps = 60/457 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GY K   + +AR+LFD M  R VV+W  M+  Y  +   G + EAR LFD MPER  
Sbjct: 106 MLAGYAKAGRVHRARRLFDGMLTRGVVAWTCMVDAYCRA---GRVSEARELFDAMPERSV 162

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  ++ GYA+ G   EA  +F+ MP RNVVSW  M+  +   G   +A+  FDRMP R
Sbjct: 163 VSWTAMMHGYARAGMPREAREMFDRMPERNVVSWTVMVKAYADGGYFQDAMGLFDRMPQR 222

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +S S +A++SG  + G +DEA R+  +   R       V ++  ++ G  Q GRV  AR+
Sbjct: 223 NSYSWNAVISGSFRAGRVDEAVRLFERMPHRN------VVSWTAMVTGLAQNGRVSMARE 276

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            FD +P             ++I +WN+MI  YA  G++  AR +F+ M  +D  SWNT+I
Sbjct: 277 FFDVMPC------------KDITAWNAMITAYANNGEMNEARRLFDSMPAKDLVSWNTVI 324

Query: 241 SGYIHVLDMEEASNLFVKM------PHPDTLT---------------------------- 266
            GY      +EAS LF+ M      P+  TL                             
Sbjct: 325 DGYAKKELKDEASGLFLDMLRSAASPNSTTLISVLVISESMVEVVQIHGLATTLGLLSET 384

Query: 267 --WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
              NA+++ Y++IG+L  A   FKR+ +K+ ++W SMI     +     A++ F QM   
Sbjct: 385 SLGNALLTMYSRIGDLPSAWLAFKRLEEKDAITWTSMIQAFANHGHASYALQAFAQMLEH 444

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINN--ALITMYARCGAIVE 382
           G+ P   TF+++LS  S    +  G  + + +      +  I +   LI +  R G + E
Sbjct: 445 GKNPSSTTFTAVLSACSHAGLVEEGKSVFRSIRHVYGLERTIEHYTCLIDILGRAGNMRE 504

Query: 383 ARIIFEEMKL-LKNVVSWNAMIGGCASHGFATEALEL 418
           A  +   M   + +      ++G C  H     A E+
Sbjct: 505 AMDVVNAMPPDICDDAILRTLLGACMMHKEVDAAREV 541


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 216/713 (30%), Positives = 338/713 (47%), Gaps = 142/713 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS-------------GFLEE 47
           ++  Y K  ++ +AR++FD+MP+RDVV+WN MI+G   S                G    
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPS 229

Query: 48  ARYLFDIMP-------------------ERD--CVTWNTVISGYAKTGEMEEALRLFNSM 86
           +  L ++ P                    RD      N +I  Y+K G+++ A R+F+ M
Sbjct: 230 SVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM 289

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMP-GRDSASLSALVSGLIQNGELDEAAR-- 143
             ++ VSW  M++G+  NG     +E FD+M  G    +  + VS  +   E  +  +  
Sbjct: 290 VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGK 349

Query: 144 --------------VLV---------KCGSRCDG--------GEDLVRAYNTLIVGYGQR 172
                         +LV         KCG             G DLV A++ +I    Q 
Sbjct: 350 EIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLV-AWSAIIAALVQT 408

Query: 173 GRVEEARKLFDKI-----------------------------PVNCDRGEGNVRFKRNIV 203
           G  EEA  LF ++                              ++C   + ++    ++ 
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADM--DSDLS 466

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP--- 260
           +  +++  YAK G   +A   F +M  RD  +WN++I+GY  + D   A ++F K+    
Sbjct: 467 TGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSA 526

Query: 261 -HPDTLTW-----------------------------------NAMVSGYAQIGNLELAL 284
            +PD  T                                    NA++  YA+ G+L  A 
Sbjct: 527 INPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAE 586

Query: 285 DFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
             F +    K+ V+WN +IA    N   + AI  F QM++E   P+  TF S+L  ++ +
Sbjct: 587 FLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYL 646

Query: 344 VDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
                GM  H  + +   + +  + N+LI MYA+CG +  +  +F EM   K+ VSWNAM
Sbjct: 647 AAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDH-KDTVSWNAM 705

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           + G A HG    A+ LF  M+  +V    ++F+SVLSAC H GLVEEGR+ F SM ++Y 
Sbjct: 706 LSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYH 765

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           I+P +EH+A +VD++GR G  ++ +  IK MP EPD  VWGALLG+CR+H+NV+L +VA 
Sbjct: 766 IKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVAL 825

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           + L+K+EP N   +V+L ++YA  GRW DA + R  M    +KK  G SWV+ 
Sbjct: 826 DHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVEL 878



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 167/649 (25%), Positives = 272/649 (41%), Gaps = 139/649 (21%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRG------------SGFLEEARYLFDIMP----- 56
           AR +FD  P    + WN MI  Y  S+                LE  +Y F  +      
Sbjct: 82  ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141

Query: 57  -------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM 97
                              ERD      ++  Y+K G+++ A  +F+ MP R+VV+WNAM
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAM 201

Query: 98  ISGFLQNGDVANAIEFFDRMP--GRDSASLSAL-----------------VSGLIQNGEL 138
           I+G  Q+ D   A++FF  M   G + +S+S L                 + G +   + 
Sbjct: 202 IAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF 261

Query: 139 DEA-ARVLVKCGSRCDGGEDLVR------------AYNTLIVGYGQRGRVEEARKLFDKI 185
             A +  L+   S+C G  D+ R            ++ T++ GY   G   E  +LFDK+
Sbjct: 262 SSAVSNGLIDLYSKC-GDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM 320

Query: 186 ---------------------PVNCDRGEG------NVRFKRNIVSWNSMIMCYAKAGDV 218
                                 ++ ++G+         R   +I+    +++ YAK G+ 
Sbjct: 321 KLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGET 380

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTL------- 265
             A+++F  +  RD  +W+ +I+  +     EEA +LF +M      P+  TL       
Sbjct: 381 EKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPAC 440

Query: 266 --------------------------TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
                                     T  A+VS YA+ G    AL  F RM  +++V+WN
Sbjct: 441 ADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWN 500

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           S+I G     D   AI +F ++++    PD  T   ++   + + DL  G  IH ++ K 
Sbjct: 501 SLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKL 560

Query: 360 VI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
               D  + NALI MYA+CG++  A  +F +    K+ V+WN +I     +G A EA+  
Sbjct: 561 GFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISS 620

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  MR     P  +TF+SVL A A+     EG   F + + + G         SL+D+  
Sbjct: 621 FHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYA 679

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
           + G+L  +  L   M  + D   W A+L    VH + + A +A  +LM+
Sbjct: 680 KCGQLXYSEKLFNEMDHK-DTVSWNAMLSGYAVHGHGDRA-IALFSLMQ 726



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 142/569 (24%), Positives = 235/569 (41%), Gaps = 100/569 (17%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP-------------------- 87
           AR +FD  P    + WN++I  Y ++ +  EAL ++  M                     
Sbjct: 82  ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141

Query: 88  -------------------ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSAL 128
                               R+V     ++  + + GD+  A E FD+MP RD  + +A+
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAM 201

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
           ++GL Q+ +  EA         +  G E    +   L  G  +   +E  R +   +   
Sbjct: 202 IAGLSQSEDPCEAVDFFR--SMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYV--- 256

Query: 189 CDRGEGNVRFKRNIVSW--NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246
                    F+R+  S   N +I  Y+K GDV  AR +F+QM+++D  SW TM++GY H 
Sbjct: 257 ---------FRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHN 307

Query: 247 LDMEEASNLFVKMP---------------------------------------HPDTLTW 267
               E   LF KM                                          D L  
Sbjct: 308 GCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVA 367

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
             ++  YA+ G  E A   F  +  ++LV+W+++IA        E A+ LF +MQ +  K
Sbjct: 368 TPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMK 427

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARII 386
           P+R T  SIL   + +  L LG  IH    K  +  D+    AL++MYA+CG    A   
Sbjct: 428 PNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTT 487

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F  M   +++V+WN++I G A  G    A+++F  +R   + P   T + V+ ACA    
Sbjct: 488 FNRMS-SRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLND 546

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +++G      ++ + G E       +L+D+  + G L  A  L     F  D+  W  ++
Sbjct: 547 LDQGTC-IHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVII 605

Query: 507 GACRVHNNVELAQVAAEALMKVEPENSTP 535
            A   + +   A+ A  +  ++  EN  P
Sbjct: 606 AAYMQNGH---AKEAISSFHQMRLENFHP 631



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 123/247 (49%), Gaps = 11/247 (4%)

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +++ Y+     +LA   F   P  + + WNSMI     +K Y  A++++  M  +G +PD
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFE 388
           ++TF+ +L   +G ++L  G+  H  + +  +  DV I   L+ MY++ G +  AR +F+
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
           +M   ++VV+WNAMI G +      EA++ F+SM+   V P+ ++ +++         +E
Sbjct: 189 KMP-KRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIE 247

Query: 449 EGRQHFKSMVNEYGIEPRIEHFAS--LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             R      ++ Y          S  L+D+  + G ++ A  +   M  + D   WG ++
Sbjct: 248 LCRS-----IHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMM 301

Query: 507 GACRVHN 513
            A   HN
Sbjct: 302 -AGYAHN 307


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 209/650 (32%), Positives = 322/650 (49%), Gaps = 118/650 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI-------------SSRGSGFLEE 47
           +I+ Y    ++  AR  FD++  +DV +WN MIS Y                  + FL+ 
Sbjct: 81  LINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQS 140

Query: 48  ARYLF---------------------DIMPERDCVTWNTVISGYAKTGEMEEALRLFNSM 86
             Y F                      +  E D     + I  Y++ G +  A  LF++M
Sbjct: 141 DHYTFPPVIRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNM 200

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLV 146
             R++ +WNAMISGF  NG VA A+E FD M  +  +  S  +S L+             
Sbjct: 201 MIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLL------------- 247

Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
                C   +D++     LI  Y  +  +E     FD                  +   N
Sbjct: 248 ---PICVQLDDIISG--VLIHVYAIKLGLE-----FD------------------LFVCN 279

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----P 262
           ++I  YAK G++ SA  IF QM  RD  SWN++++ +        A  ++ KM      P
Sbjct: 280 ALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVP 339

Query: 263 DTLT----------------------------W--------NAMVSGYAQIGNLELALDF 286
           D LT                            W        NA++  YA++G ++ A   
Sbjct: 340 DLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKV 399

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV-EGEKPDRHTFSSILSMSSGIVD 345
           F+ +P K+++SWNS+I G   N     AI ++  M+   G  P++ T+ SIL+  S +  
Sbjct: 400 FEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGA 459

Query: 346 LHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           L  GM+ H Q++   +  D+ ++  L+ MY +CG + +A  +F E+   ++ VSWNA+I 
Sbjct: 460 LKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPH-QSSVSWNAIIS 518

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
               HG+  +A++LFK M+S  V P +ITF+S+LSAC+H+GLV+EG+  F+ M   YGI 
Sbjct: 519 CHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIR 578

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           P ++H+  +VD+ GR G LE A + +K MP  PD +VWGALLGACR+H NVEL +  ++ 
Sbjct: 579 PSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDH 638

Query: 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           L+KVE EN   YVLL N+YA +G W+  +EVR L +   +KK  G+S ++
Sbjct: 639 LLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIE 688


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 185/596 (31%), Positives = 331/596 (55%), Gaps = 45/596 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y K    A+AR++FD MP  ++ ++N ++S    +R    L +   LF  M +RD 
Sbjct: 47  LLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHAR---LLSDMEALFASMTQRDI 103

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM--------PARNVVSWNAMISGFLQNGDVANAIE 112
           V++N VI+G++  G   +A+R++ ++        P+R  +S   M +  L  GD A   +
Sbjct: 104 VSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASAL--GDRALGKQ 161

Query: 113 FFDRMP----GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           F  ++     G ++   S LV    +   + +A R   +  S+       V  YNT+I G
Sbjct: 162 FHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKN------VVMYNTMITG 215

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
             +   VEEAR+LF+            V   R+ ++W +M+  + + G    A EIF +M
Sbjct: 216 LLRCKMVEEARRLFE------------VMTDRDSITWTTMVTGFTQNGLESEALEIFRRM 263

Query: 229 ----LERDTFSWNTMISGYIHVLDMEEASNL---FVKMPHPDTL-TWNAMVSGYAQIGNL 280
               +  D +++ ++++    +  +E+   +    ++  + D +   +A+V  Y++  ++
Sbjct: 264 RFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSI 323

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           +LA   F+RM  KN++SW ++I G   N   E A+++F +MQ +G  PD +T  S++S  
Sbjct: 324 KLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSC 383

Query: 341 SGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           + +  L  G Q H + +   ++  + ++NAL+T+Y +CG+I +A  +F+EM    + VSW
Sbjct: 384 ANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSW 442

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
            A++ G A  G A E ++LF+ M +  V P  +TFI VLSAC+ AG VE+GR +F SM  
Sbjct: 443 TALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQK 502

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
           ++GI P  +H+  ++D+  R G+L++A + IK MP  PD   WG LL ACR+  ++E+ +
Sbjct: 503 DHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGK 562

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
            AAE L++++P+N   YVLL +M+A  G+W++  ++R  M+   +KK  G SW+ +
Sbjct: 563 WAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKY 618



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 128/270 (47%), Gaps = 40/270 (14%)

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           T+  N +++ Y        A  +F  MPHP+  T+NA++S  A    L      F  M Q
Sbjct: 41  TYLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQ 100

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQ-MQVEGE-KPDRHTFSSILSMSSGIVDLHLGM 350
           +++VS+N++IAG      +  A+++++  +Q +   +P R T S+++  +S + D  LG 
Sbjct: 101 RDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGK 160

Query: 351 QIHQMVTK--------------------TVIPD------------VPINNALITMYARCG 378
           Q H  + +                    +++ D            V + N +IT   RC 
Sbjct: 161 QFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCK 220

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
            + EAR +FE M   ++ ++W  M+ G   +G  +EALE+F+ MR   +     TF S+L
Sbjct: 221 MVEEARRLFEVMT-DRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSIL 279

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           +AC     +E+G+Q     ++ Y I  R +
Sbjct: 280 TACGALSALEQGKQ-----IHAYIIRTRYD 304


>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 197/578 (34%), Positives = 302/578 (52%), Gaps = 64/578 (11%)

Query: 14  ARKLFDEMPQRDVVSWNV----MISGYISSRGSGF-LEEARYLFDIMPER----DCVTWN 64
           AR +F E       S NV    + +  I S   G    +A  LF +M +     D  + +
Sbjct: 68  ARCVFHEYHVSSXXSGNVEDPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLS 127

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVS----WNAMISGFLQNGDVANAIEFFDRMPGR 120
            V+   ++ G ++E ++    +    + S     N +I  +L+ G +  A + FDRM  R
Sbjct: 128 LVLKACSRLGFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQR 187

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           DS S                                     YN++I GY + G +E AR+
Sbjct: 188 DSVS-------------------------------------YNSMIDGYVKCGLIESARE 210

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDTFSWNTM 239
           LFD +P            K+N++SWNSMI  YA+  D V  A  +F++M E+D  SWN++
Sbjct: 211 LFDLMPSE----------KKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSL 260

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           I GY+    +E+A +LF KMP  D +TW  MV GYA++G +  A   F +MPQ+++V++N
Sbjct: 261 IDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYN 320

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIH-QMVT 357
           SM+AG   N+ +  AI +F  M+ E    PD  T   +LS  + +  L   M +H   V 
Sbjct: 321 SMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVE 380

Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
           K  +    +  ALI MY++CG+I +A  +FE ++  K++  WNAMIGG A HG    A +
Sbjct: 381 KKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIEN-KSIDHWNAMIGGLAIHGLGESAFD 439

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           +   +    + P  ITF+ VL+AC+H+GLV+EG   F+ M  ++ IEPR++H+  +VDI+
Sbjct: 440 MLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVDIL 499

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
            R GR+E A +LI+ MP EP+  +W   L AC  H   E  ++ A+ L+     N + YV
Sbjct: 500 SRSGRIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYV 559

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           LL NMYA +G W +   VR +MK   I+K  G SW++ 
Sbjct: 560 LLSNMYASLGMWKEVRRVRTMMKERKIQKIPGCSWIEL 597



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 212/423 (50%), Gaps = 66/423 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ER 58
           +I  Y+K   +  AR++FD M QRD VS+N MI GY+     G +E AR LFD+MP  ++
Sbjct: 164 LIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVK---CGLIESARELFDLMPSEKK 220

Query: 59  DCVTWNTVISGYAKTGE-MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           + ++WN++I+GYA+  + ++ A  LF+ MP ++++SWN++I G++++G + +A + FD+M
Sbjct: 221 NLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLFDKM 280

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P RD                                     V  + T++ GY + G V +
Sbjct: 281 PRRD-------------------------------------VVTWATMVDGYAKLGFVHQ 303

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-----LERD 232
           A+ LFD++P            +R++V++NSM+  Y +    + A +IF  M     L  D
Sbjct: 304 AKSLFDQMP------------QRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPD 351

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN----AMVSGYAQIGNLELALDFFK 288
             +   ++S    +  + +A ++ +       L       A++  Y++ G+++ A+  F+
Sbjct: 352 ETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFE 411

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
           R+  K++  WN+MI G   +   E A  + +Q++    KPD  TF  +L+  S    +  
Sbjct: 412 RIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKE 471

Query: 349 GMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           G+   +++ +   + P +     ++ + +R G I  A+ + EEM +  N V W   +  C
Sbjct: 472 GLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRIELAKNLIEEMPIEPNDVIWRTFLTAC 531

Query: 407 ASH 409
           + H
Sbjct: 532 SHH 534



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 172/329 (52%), Gaps = 35/329 (10%)

Query: 1   MISGYVKRREMAK-ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           MI+GY +R +    A  LFDEMP++D++SWN +I GY+     G +E+A+ LFD MP RD
Sbjct: 228 MINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVK---HGRIEDAKDLFDKMPRRD 284

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            VTW T++ GYAK G + +A  LF+ MP R+VV++N+M++G++QN     AI+ F+ M  
Sbjct: 285 VVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEK 344

Query: 120 R-----DSASLSALVSGLIQNGELDEAARV-LVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
                 D  +L  ++S + Q G L +A  + L     +   G  L  A   LI  Y + G
Sbjct: 345 ESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVA---LIDMYSKCG 401

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-- 231
            +++A  +F++I              ++I  WN+MI   A  G   SA ++  Q+  R  
Sbjct: 402 SIQQAMGVFERIE------------NKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSI 449

Query: 232 --DTFSWNTMISGYIHVLDMEEASNLF--VKMPH---PDTLTWNAMVSGYAQIGNLELAL 284
             D  ++  +++   H   ++E    F  +K  H   P    +  MV   ++ G +ELA 
Sbjct: 450 KPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRIELAK 509

Query: 285 DFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
           +  + MP + N V W + +  C  +K++E
Sbjct: 510 NLIEEMPIEPNDVIWRTFLTACSHHKEFE 538


>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 607

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 177/507 (34%), Positives = 286/507 (56%), Gaps = 14/507 (2%)

Query: 64  NTVISGYAKTGEMEEALRLFN-SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS 122
           N +I+ Y     +++A +L + ++ + N+VSWN +++ +LQ+  +    + FD+MP +D+
Sbjct: 12  NYMINTYIDNNNVKQAHKLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKDA 71

Query: 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
            S + ++SG  +    +   R  ++ G       D     +TL+     R  +       
Sbjct: 72  VSWNIMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDY--TISTLL-----RAVISTE---L 121

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
           D +         ++    N+   +S+I  YA   +  +    F  +  +D  SWN ++S 
Sbjct: 122 DVLVRQVHALAFHLGHYLNVFVGSSLIRAYAGLKEEEALGRAFNDISMKDVTSWNALVSS 181

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
           Y+ +    +A   F +MP  + ++W  +V+GY +   +  A   F  M ++N+VSW +MI
Sbjct: 182 YMELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMI 241

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP 362
           +G   NK +  A+KLF+ M     +P+  TFSS+L   +G   L +G+Q+H  + K+ I 
Sbjct: 242 SGYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIA 301

Query: 363 -DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
            DV    +L+ MYA+CG +  A  +FE ++  KN+VSWNA+IGG ASHG AT ALE F  
Sbjct: 302 NDVIWLTSLVDMYAKCGDMDAAFGVFESIRD-KNLVSWNAIIGGYASHGLATRALEEFDR 360

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M+     P  +TF++VLSAC HAGLVEEG +HF  M+ +YGI+  +EH++ +VD+ GR G
Sbjct: 361 MKVVGT-PDEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAG 419

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
           R ++A +LIK MPFEPD  +WGALL AC +H+N+EL + AAE + ++E  +   Y +L  
Sbjct: 420 RFDEAENLIKNMPFEPDVVLWGALLAACGLHSNLELGEYAAERIRRLESSHPVSYSVLSK 479

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPT 568
           +  + G W   NE+R  MK   IKK T
Sbjct: 480 IQGEKGVWSSVNELRDTMKERGIKKQT 506



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 161/624 (25%), Positives = 261/624 (41%), Gaps = 135/624 (21%)

Query: 1   MISGYVKRREMAKARKLFDE-MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           MI+ Y+    + +A KL DE +   ++VSWN++++ Y+     G + +   LFD MP +D
Sbjct: 14  MINTYIDNNNVKQAHKLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHD---LFDKMPLKD 70

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQ-----NGDV------A 108
            V+WN ++SG+ +T   E   R F  M    VV  +  IS  L+       DV      A
Sbjct: 71  AVSWNIMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVISTELDVLVRQVHA 130

Query: 109 NAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
            A      +     +SL    +GL +   L  A           D     V ++N L+  
Sbjct: 131 LAFHLGHYLNVFVGSSLIRAYAGLKEEEALGRAFN---------DISMKDVTSWNALVSS 181

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y + G+  +A+  FD++P            +RNI+SW +++  Y K   V  AR +F+ M
Sbjct: 182 YMELGKFVDAQTAFDQMP------------QRNIISWTTLVNGYVKNKQVNKARSVFDDM 229

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKM----------------------------- 259
            ER+  SW  MISGY+      +A  LFV M                             
Sbjct: 230 SERNVVSWTAMISGYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGL 289

Query: 260 -PHP---------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
             HP         D +   ++V  YA+ G+++ A   F+ +  KNLVSWN++I G  ++ 
Sbjct: 290 QLHPCIIKSGIANDVIWLTSLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHG 349

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHLGMQIHQMVTKTVI-PDVPI 366
               A++ F +M+V G  PD  TF ++LS  + +G+V+         M+TK  I  ++  
Sbjct: 350 LATRALEEFDRMKVVG-TPDEVTFVNVLSACVHAGLVE-EGEKHFTDMLTKYGIQAEMEH 407

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL--FKSMRS 424
            + ++ +Y R G   EA  + + M    +VV W A++  C  H      LEL  + + R 
Sbjct: 408 YSCMVDLYGRAGRFDEAENLIKNMPFEPDVVLWGALLAACGLHS----NLELGEYAAERI 463

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI------EHFASLVDIVG 478
            ++  ++    SVLS       V       +  + E GI+ +         F+ L  I  
Sbjct: 464 RRLESSHPVSYSVLSKIQGEKGVWSSVNELRDTMKERGIKKQTPGDKNCAQFSKLDSIKT 523

Query: 479 R----------------HGR---------------------------LEDAMDLIKGMPF 495
           +                HG                            +  +  LIK M F
Sbjct: 524 KIEFILIASNPFKNSPLHGNDYIKAYMCKGNLFLSYIWTYIDGILEVVATSFVLIKNMSF 583

Query: 496 EPDKAVWGALLGACRVHNNVELAQ 519
           EPD  +W ALL  C +H+N++L +
Sbjct: 584 EPDVPLWDALLSTCGLHSNLKLGE 607


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 181/549 (32%), Positives = 299/549 (54%), Gaps = 31/549 (5%)

Query: 44  FLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQ 103
            L  A + F+   E +  ++N +I+ YAK   +  A  LF+ +P  ++VS+N +I+ +  
Sbjct: 58  LLTTAHHAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYAD 117

Query: 104 NGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLV 159
            GD  +A+  F  M       D  + S +++    +  L      L    +   G +  V
Sbjct: 118 RGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQLHSL----AFSSGFDSYV 173

Query: 160 RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVV 219
              N+L+  Y + G +EEA  +F+ +      GE      R+ VSWNSMI+ Y +    +
Sbjct: 174 SVKNSLLTYYSKNGILEEAEMVFNGM------GEE----VRDEVSWNSMIVAYGQHKRGL 223

Query: 220 SAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMV 271
            A  ++  M+ R    D F+  ++++ +  V D+        K      + +    + ++
Sbjct: 224 KALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLI 283

Query: 272 SGYAQIG-NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE-GAIKLFIQMQVEGEKPD 329
             YA+ G  +  +   F+ +   +LV WN+MI+G   NK+    A++ F QMQ  G  PD
Sbjct: 284 DMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPD 343

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP--DVPINNALITMYARCGAIVEARIIF 387
             +F   +S  S +     G Q H +  K+ IP   + +NNAL+TMY++CG + +AR +F
Sbjct: 344 DCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLF 403

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
           + M    N V+ N++I G A HG  TE+L LF+ M +  + PT IT +S+LSACAH G V
Sbjct: 404 QRMPQ-HNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRV 462

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           EEG+++F  M + +GIEP  EH++ ++D++GR G+L +A  LI  MPF P  A W ALLG
Sbjct: 463 EEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLG 522

Query: 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
           ACR + N+ELA+ AA   +++EP N+ PY++L +MY+   +W++A  +R LM+   I+K 
Sbjct: 523 ACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKK 582

Query: 568 TGYSWVDFS 576
            G SW++ +
Sbjct: 583 PGCSWIELN 591



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 141/296 (47%), Gaps = 17/296 (5%)

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREI----FEQMLERDTFSWNTMISGYIHVLDMEE 251
            +F   + S+  ++       D+++ + +     + ++   T+  N  I  Y     +  
Sbjct: 2   TQFSWTLQSFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTT 61

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           A + F +   P+  ++NA+++ YA+   + +A   F ++PQ +LVS+N++I       D 
Sbjct: 62  AHHAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDT 121

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM--QIHQMVTKTVIPD-VPINN 368
             A+ LF +M+  G   D  TFS +++        H+G+  Q+H +   +     V + N
Sbjct: 122 LSALSLFGEMREMGLVMDGFTFSGVITACCN----HVGLIRQLHSLAFSSGFDSYVSVKN 177

Query: 369 ALITMYARCGAIVEARIIFEEM-KLLKNVVSWNAMIGGCASHGFATEALELFKSM--RSF 425
           +L+T Y++ G + EA ++F  M + +++ VSWN+MI     H    +AL L++ M  R F
Sbjct: 178 SLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGF 237

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           ++     T  SVL+  +    +  G Q F +   + G        + L+D+  + G
Sbjct: 238 EI--DMFTLASVLTTFSCVEDLSGGLQ-FHAKAIKTGFNKNRHVGSGLIDMYAKCG 290



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 110/262 (41%), Gaps = 54/262 (20%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGY---------------------------------- 36
           M+++RK+F+E+   D+V WN MISGY                                  
Sbjct: 293 MSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAIS 352

Query: 37  ----ISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV 92
               +SS   G    A  +   +P       N +++ Y+K G +++A +LF  MP  N V
Sbjct: 353 ACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTV 412

Query: 93  SWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNGELDEAARVLVKC 148
           + N++I+G+ Q+G    ++  F++M        S +L +++S     G ++E  +     
Sbjct: 413 TLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYF-NM 471

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
                G E     Y+ +I   G+ G++ EA +L D +P           F     +W ++
Sbjct: 472 MKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMP-----------FSPGSAAWAAL 520

Query: 209 IMCYAKAGDVVSAREIFEQMLE 230
           +    K G++  A +   Q L+
Sbjct: 521 LGACRKYGNMELAEKAANQFLQ 542


>gi|308044597|ref|NP_001182884.1| uncharacterized protein LOC100501159 [Zea mays]
 gi|238007964|gb|ACR35017.1| unknown [Zea mays]
          Length = 580

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/546 (32%), Positives = 283/546 (51%), Gaps = 88/546 (16%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
             ++ GYAK G ++ A  LF++MP +NVV+W +M+SG+ + G V  A E FD MP R+  
Sbjct: 32  TAMLDGYAKAGRVDRARELFDAMPVKNVVTWTSMVSGYFRAGRVQEARELFDVMPERNDY 91

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S                                     + T++ GY + G + EAR++FD
Sbjct: 92  S-------------------------------------WTTVVQGYARNGMLREAREMFD 114

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           ++P            +RN+V+W +M+  Y   G +  A E+F+ M ER+++SWN MISG+
Sbjct: 115 RMP------------QRNVVAWTAMVKAYVDCGQIQQAWELFDMMPERNSYSWNAMISGF 162

Query: 244 IHVLDMEEASNLFVKMPH---------------------------------PDTLTWNAM 270
           + +  + EA  LF +MPH                                  DT  WNA+
Sbjct: 163 LSIGKVAEAVQLFERMPHRHKNVVSWTTMVAGLANNGLACRAREFFDRMPAKDTAAWNAI 222

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
           ++ YA  G L  A   F  M  K+LV+W+++I     N+    A+ +F+ M+     P+ 
Sbjct: 223 ITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMFLLMRHSAVSPNI 282

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEE 389
            T  SIL +S   V++    QIH +V     + +  + NAL+TMY+R G ++ A   F+ 
Sbjct: 283 RTLISILVISESTVEVK---QIHGLVIALGFLSETSLGNALLTMYSRSGDLMSAWFAFKR 339

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           ++  K+ ++W +++   A HG    AL  F  M      P+  TF +VLSAC H GLV +
Sbjct: 340 LEQ-KDAITWTSIVQAFADHGCGYHALLGFAQMLRHGYKPSSTTFTAVLSACRHVGLVGK 398

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE-PDKAVWGALLGA 508
           GR+ FKS+ + YG+EP IEH++ LVD++GR G + +A +L+ GM     D+A+   LLGA
Sbjct: 399 GRKMFKSIYHVYGLEPTIEHYSCLVDLLGRAGYVREAKELVDGMQQGMRDEAILATLLGA 458

Query: 509 CRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPT 568
           C VHN VE+A+   E L++ +P  +  Y LL N++A  G WD+   V  +M+ +  K+  
Sbjct: 459 CVVHNEVEVAREVGEDLVRFDPSGTGGYRLLANVFASHGMWDETANVWKVMRGSKAKRTP 518

Query: 569 GYSWVD 574
           G+S ++
Sbjct: 519 GFSQIE 524



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 232/464 (50%), Gaps = 58/464 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+ GY K   + +AR+LFD MP ++VV+W  M+SGY  +   G ++EAR LFD+MPER+ 
Sbjct: 34  MLDGYAKAGRVDRARELFDAMPVKNVVTWTSMVSGYFRA---GRVQEARELFDVMPERND 90

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +W TV+ GYA+ G + EA  +F+ MP RNVV+W AM+  ++  G +  A E FD MP R
Sbjct: 91  YSWTTVVQGYARNGMLREAREMFDRMPQRNVVAWTAMVKAYVDCGQIQQAWELFDMMPER 150

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +S S +A++SG +  G++ EA ++  +   R       V ++ T++ G    G    AR+
Sbjct: 151 NSYSWNAMISGFLSIGKVAEAVQLFERMPHRHKN----VVSWTTMVAGLANNGLACRARE 206

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            FD++P             ++  +WN++I  YA  G +  A+ +F+ ML +D  +W+T+I
Sbjct: 207 FFDRMPA------------KDTAAWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTII 254

Query: 241 SGYIHVLDMEEASNLFVKMPH------------------------------------PDT 264
             Y       EA N+F+ M H                                     +T
Sbjct: 255 EAYSKNERKHEALNMFLLMRHSAVSPNIRTLISILVISESTVEVKQIHGLVIALGFLSET 314

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
              NA+++ Y++ G+L  A   FKR+ QK+ ++W S++     +     A+  F QM   
Sbjct: 315 SLGNALLTMYSRSGDLMSAWFAFKRLEQKDAITWTSIVQAFADHGCGYHALLGFAQMLRH 374

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVE 382
           G KP   TF+++LS    +  +  G ++ + +     + P +   + L+ +  R G + E
Sbjct: 375 GYKPSSTTFTAVLSACRHVGLVGKGRKMFKSIYHVYGLEPTIEHYSCLVDLLGRAGYVRE 434

Query: 383 ARIIFEEMKL-LKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           A+ + + M+  +++      ++G C  H     A E+ + +  F
Sbjct: 435 AKELVDGMQQGMRDEAILATLLGACVVHNEVEVAREVGEDLVRF 478


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 206/656 (31%), Positives = 327/656 (49%), Gaps = 98/656 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  +++R ++  ARKLFDEMP +++ S N MI GYI S   G L EAR LFD M +R  
Sbjct: 107 LVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKS---GNLSEARTLFDSMFQRTA 163

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNV----VSWNAMISGFLQNGDVAN------- 109
           VTW  +I GYA+  +  EA  LF  M    +    VS   ++SGF +   V         
Sbjct: 164 VTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSH 223

Query: 110 ----------------------------AIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                                       A + F+ +P RDS + +AL++G  + G   EA
Sbjct: 224 VIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREA 283

Query: 142 ARVLVK------------------CGSRCDG---GEDL------------VRAYNTLIVG 168
             +  K                   G + D    G+ +            V   N L+  
Sbjct: 284 INLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDF 343

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y +  RV EA KLF ++P            + + +S+N ++ CYA  G V  + E+F+++
Sbjct: 344 YSKHDRVVEASKLFYEMP------------EVDGISYNVLVTCYAWNGRVKESLELFKEL 391

Query: 229 ----LERDTFSWNTMISGYIHVLDMEEA----SNLFVKMPHPDTLTWNAMVSGYAQIGNL 280
                +R  F + T++S     L+++      S   V     + L  N++V  YA+ G  
Sbjct: 392 QFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEF 451

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
             A   F  +  ++ V W +MI+       +E  +KLF++MQ      D  T++SI+   
Sbjct: 452 GEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRAC 511

Query: 341 SGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           + +  L LG Q+H  ++    I +V   +AL+ MYA+CG+I +A  +F+EM  ++N VSW
Sbjct: 512 ASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMP-VRNSVSW 570

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           NA+I   A +G     L LF+ M    + P  ++ +S+L AC+H GLVEEG Q+F SM  
Sbjct: 571 NALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTR 630

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
            Y + P+ EH+AS +D++ R GR ++A  L+  MPFEPD+ +W ++L +C +H N ELA+
Sbjct: 631 IYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAK 690

Query: 520 VAAEALMKVEP-ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            AA  L  ++   ++ PYV + N+YA  G WD+  +V+  M+   +KK   YSWV+
Sbjct: 691 KAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVE 746



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 142/292 (48%), Gaps = 10/292 (3%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           +T+  N ++  ++   D+  A  LF +MPH +  + N M+ GY + GNL  A   F  M 
Sbjct: 100 NTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMF 159

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           Q+  V+W  +I G   N  +  A  LFI+M   G  PD  + +++LS  +    ++   Q
Sbjct: 160 QRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQ 219

Query: 352 IHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +H  V K      + ++N+L+  Y +  ++  A  +F ++   ++ V++NA++ G +  G
Sbjct: 220 VHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIP-ERDSVTFNALLTGYSKEG 278

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
           F  EA+ LF  M+     PT  TF ++L+A      +E G+Q     V +      +   
Sbjct: 279 FNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQ-VHGFVVKCNFVWNVFVA 337

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC-----RVHNNVEL 517
            +L+D   +H R+ +A  L   MP E D   +  L+  C     RV  ++EL
Sbjct: 338 NALLDFYSKHDRVVEASKLFYEMP-EVDGISYNVLV-TCYAWNGRVKESLEL 387


>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
          Length = 597

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 195/589 (33%), Positives = 311/589 (52%), Gaps = 71/589 (12%)

Query: 7   KRREMAK-ARKLFDE-----MP---QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE 57
           +R+ +A+ AR +F+E     +P     D   WN +I  +  S G+     + +LF +M E
Sbjct: 42  RRQYLAEFARCVFEEHHVYSLPYGETEDPFLWNAVIKSH--SHGTD-PRRSLFLFCLMLE 98

Query: 58  R----DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS----WNAMISGFLQNGDVAN 109
                D  + + V+   ++ G ++  + +   +    + S     N +I  +L+ G +  
Sbjct: 99  NGVSVDKFSLSLVLKACSRLGFVKAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGY 158

Query: 110 AIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
           + + FDRMP RDS S                                     YN++I GY
Sbjct: 159 SRQVFDRMPQRDSVS-------------------------------------YNSMIDGY 181

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQM 228
            + G +E AR+LFD +P          +  +N++SWN +I  YA+  D V+ A ++F +M
Sbjct: 182 VKCGLIESARELFDLMP----------KEMKNLISWNCLISGYAQTSDGVNIASKLFSEM 231

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
            E+D  SWN+MI GY+    +E+A +LF  MP  D +TW  M+ GYA++G +  A   F 
Sbjct: 232 PEKDLISWNSMIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFD 291

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLH 347
           ++P +++V++NSM+AG   NK +  A++LFI+M+ E    PD  T   +LS  + +  L 
Sbjct: 292 QIPHRDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLS 351

Query: 348 LGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
             M +H  +V K       +  ALI MY++CG+I  A ++F+ ++  KN+  WNA+IGG 
Sbjct: 352 KAMDMHFYIVKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLEN-KNIDHWNAIIGGL 410

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
           A HG    A ++   +    + P  ITFI VL+AC+H+GLV+EG   F+ M  ++ IEPR
Sbjct: 411 AIHGLGGPAFDMLLQIERLSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPR 470

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM 526
           ++H+  +VDI+ R G +E A  LI+ MP EP+  +W   L AC  H   E+ ++ A+ L+
Sbjct: 471 LQHYGCMVDILSRSGSIELAKILIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLI 530

Query: 527 KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
                N + YVLL NMYA  G W D   VR +MK   I+K  G SW++ 
Sbjct: 531 LQAGYNPSSYVLLSNMYASCGMWKDVRRVRTMMKERKIQKIPGCSWIEL 579



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 211/423 (49%), Gaps = 66/423 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--R 58
           +I  Y+K   +  +R++FD MPQRD VS+N MI GY+     G +E AR LFD+MP+  +
Sbjct: 146 LIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVK---CGLIESARELFDLMPKEMK 202

Query: 59  DCVTWNTVISGYAKTGE-MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           + ++WN +ISGYA+T + +  A +LF+ MP ++++SWN+MI G++++G + +A + FD M
Sbjct: 203 NLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDVM 262

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P RD                                     V  + T+I GY + G + +
Sbjct: 263 PRRD-------------------------------------VITWATMIDGYAKLGFIHQ 285

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-----LERD 232
           A+ LFD+IP             R++V++NSM+  Y +    + A E+F +M     L  D
Sbjct: 286 AKTLFDQIP------------HRDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPD 333

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN----AMVSGYAQIGNLELALDFFK 288
             +   ++S    +  + +A ++   +             A++  Y++ G+++ A+  FK
Sbjct: 334 ETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFK 393

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            +  KN+  WN++I G   +     A  + +Q++    KPD  TF  +L+  S    +  
Sbjct: 394 GLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDDITFIGVLNACSHSGLVKE 453

Query: 349 GMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           G+   +++ +   + P +     ++ + +R G+I  A+I+ E+M +  N V W   +  C
Sbjct: 454 GLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKILIEKMPIEPNDVIWRTFLTAC 513

Query: 407 ASH 409
           + H
Sbjct: 514 SHH 516



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 171/334 (51%), Gaps = 45/334 (13%)

Query: 1   MISGYVKRREMAK-ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           +ISGY +  +    A KLF EMP++D++SWN MI GY+     G +E+A+ LFD+MP RD
Sbjct: 210 LISGYAQTSDGVNIASKLFSEMPEKDLISWNSMIDGYVK---HGRIEDAKDLFDVMPRRD 266

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            +TW T+I GYAK G + +A  LF+ +P R+VV++N+M++G++QN     A+E F +M  
Sbjct: 267 VITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYHMEALELFIKMEK 326

Query: 120 R-----DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
                 D  +L  ++S + Q G L +A  +   +VK      GG+  V     LI  Y +
Sbjct: 327 ESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVK-KQFFIGGKLGV----ALIDMYSK 381

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G ++ A  +F        +G  N    +NI  WN++I   A  G    A   F+ +L+ 
Sbjct: 382 CGSIQHAMLVF--------KGLEN----KNIDHWNAIIGGLAIHGLGGPA---FDMLLQI 426

Query: 232 DTFSWNTMISGYIHVLDMEEASNL---------FVKMPH---PDTLTWNAMVSGYAQIGN 279
           +  S       +I VL+    S L          ++  H   P    +  MV   ++ G+
Sbjct: 427 ERLSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGS 486

Query: 280 LELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
           +ELA    ++MP + N V W + +  C  +K++E
Sbjct: 487 IELAKILIEKMPIEPNDVIWRTFLTACSHHKEFE 520


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 188/596 (31%), Positives = 327/596 (54%), Gaps = 45/596 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y K    A+AR++FD  P  ++ ++N ++S    +R    L++   LF  M +RD 
Sbjct: 47  LLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHAR---LLDDMDSLFASMAQRDT 103

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM--------PARNVVSWNAMISGFLQNGDVANAIE 112
           V++N VI+G++  G    A+RL++++        P+R  ++ +AM+      GD A   +
Sbjct: 104 VSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSR--ITMSAMVMAASALGDRALGRQ 161

Query: 113 FFDRMP----GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           F  ++     G ++   S LV    + G + +A RV        DG    V  YNT+I G
Sbjct: 162 FHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVF----DEMDGKN--VVMYNTMITG 215

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
             +   VEEAR+LF+            V   R+ ++W +M+  + + G    A   F +M
Sbjct: 216 LLRCKMVEEARRLFE------------VMTDRDCITWTTMVTGFTQNGLESQALNFFRRM 263

Query: 229 ----LERDTFSWNTMIS--GYIHVLDMEEASNLFVKMPHPD--TLTWNAMVSGYAQIGNL 280
               +  D +++ ++++  G +  L+  +  + ++   H D      +A+V  Y++  ++
Sbjct: 264 RFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSI 323

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           + A   F+RM  KN++SW ++I G   N   E A+++F +MQ +G  PD  T  S++S  
Sbjct: 324 KPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSC 383

Query: 341 SGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           + +  L  G Q H + +   ++  + ++NAL+T+Y +CG+I +A  +F+EM L  + VSW
Sbjct: 384 ANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEM-LFHDQVSW 442

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
            A++ G A  G A E ++LF+ M +  V P  +TFI VLSAC+ AG VE+G  +F SM  
Sbjct: 443 TALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQK 502

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
           ++GI P  +H+  ++D+  R GRL++A + IK MP  PD   WG LL ACR+  ++E+ Q
Sbjct: 503 DHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQ 562

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
            AAE L++++P+N   YVLL +M+A  G W+   ++R  M+   +KK  G SW+ +
Sbjct: 563 WAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKY 618



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 207/449 (46%), Gaps = 53/449 (11%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +++ Y K G    A R+F++ P  N+ ++NA++S       + +    F  M  RD+ 
Sbjct: 45  NHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTV 104

Query: 124 SLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQR--GRVEEA 178
           S +A+++G    G    A R+   L++ GS        + A        G R  GR    
Sbjct: 105 SYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHC 164

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT 238
           + L              + F  N    + ++  YAK G +  A+ +F++M  ++   +NT
Sbjct: 165 QIL-------------RLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNT 211

Query: 239 MISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
           MI+G +    +EEA  LF  M   D +TW  MV+G+ Q G    AL+FF+R         
Sbjct: 212 MITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRR--------- 262

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
                                 M+ +G   D++TF SIL+    +  L  G QIH  + +
Sbjct: 263 ----------------------MRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIR 300

Query: 359 TVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
           T   D V + +AL+ MY++C +I  A   F  M   KN++SW A+I G   +G + EA+ 
Sbjct: 301 THYDDNVFVGSALVDMYSKCRSIKPAETAFRRMS-CKNIISWTALIVGYGQNGCSEEAVR 359

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           +F  M+   + P   T  SV+S+CA+   +EEG Q F  +    G+   I    +LV + 
Sbjct: 360 VFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMHYITVSNALVTLY 418

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           G+ G +EDA  L   M F  D+  W AL+
Sbjct: 419 GKCGSIEDAHRLFDEMLFH-DQVSWTALV 446


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 184/571 (32%), Positives = 313/571 (54%), Gaps = 41/571 (7%)

Query: 26  VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNS 85
           V   N+++  YI+S+    L +A  L   MP+   V++NT++SGY K G + EA++LF+ 
Sbjct: 50  VYQCNILLQAYINSQA---LSDAHKLLHFMPQPSVVSYNTILSGYFKFGLVSEAIKLFDG 106

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV- 144
              R+  SWN ++SG ++N  +   +  F +M        +   + +I   +L    +V 
Sbjct: 107 TSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTYAIIIPCCDLGFGQQVH 166

Query: 145 --LVKCGSRCDG--GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +VK  S  D   G +L+R        Y + G + +ARK+FD +P             R
Sbjct: 167 ADIVKVCSDLDAFIGTNLLRM-------YAEVGEIGDARKVFDGMP------------SR 207

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYI---HVLDMEEAS 253
            +V+WN+MI CY+K G    +  +F Q+    +  D +++  +++ +     V +  +  
Sbjct: 208 GLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQVH 267

Query: 254 NLFVKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           +L ++     D  T NA+V+ Y++ G +  A   F+ +P +++VSW  +I G   +   E
Sbjct: 268 SLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHME 327

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI--PDVPINNAL 370
            A+ LF QMQ+   +P+  TF  +L   +       G   H +V K  +   DV + +A+
Sbjct: 328 EAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAV 387

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF---KV 427
           + MY++CG + +A   F+EM   +++ SWN +I G A +G   +AL+L+  M       +
Sbjct: 388 VDMYSKCGEMGDALRAFQEMP-ERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGI 446

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
            P  +TF+ VL AC+H GL++EG  +FK MV+++ I+P  EH+  +VD++GR G L++A 
Sbjct: 447 APNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQEAE 506

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
            LI  +P +PD  +WGALLGAC++H +V++ +  AE L   EP NS+ YVLL N Y D+G
Sbjct: 507 ALILALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANSYTDIG 566

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVDFSPC 578
            W +A E+R +M++  ++K  G SWV+   C
Sbjct: 567 EWGEAVEIREVMEARGVEKTAGCSWVEIGTC 597



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 104/441 (23%), Positives = 193/441 (43%), Gaps = 48/441 (10%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS-SRGSGFLEEARYLFDIMPERDCVTW 63
           Y +  E+  ARK+FD MP R +V+WN MIS Y    RG   +   R L       D  T+
Sbjct: 188 YAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTY 247

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVS----WNAMISGFLQNGDVANAIEFFDRMPG 119
             V++ +A   ++ EA+++ + +  R   S     NA+++ + + G VA+A   F+ +P 
Sbjct: 248 AIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPD 307

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           +D  S + ++ G +Q+G ++EA  +  +   +    E     +  L+         ++ R
Sbjct: 308 QDVVSWTVIIVGFLQSGHMEEAMWLFYQ--MQLGDIEPNSFTFGGLLGACADANAFQKGR 365

Query: 180 KLFDKIPVNCDRGEGNVRF---KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
                +          ++F     ++V  ++++  Y+K G++  A   F++M ERD  SW
Sbjct: 366 HFHGLV----------LKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASW 415

Query: 237 NTMISGYIHVLDMEEASNLFVKM----PH---PDTLTWNAMVSGYAQIGNLELALDFFKR 289
           N +I GY       +A  L+ +M    P    P+ +T+  ++   +  G L+    +FK 
Sbjct: 416 NGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKE 475

Query: 290 MPQKNLVS-----WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
           M  K+L+      +  M+         + A  L + + +   KPD   + ++L    G  
Sbjct: 476 MVDKHLIKPTAEHYTCMVDLLGRAGLLQEAEALILALPI---KPDNVMWGALL----GAC 528

Query: 345 DLHLGMQIHQMVTKTVIPDVPINNALITMYARC-------GAIVEARIIFEEMKLLKNV- 396
            LH  +Q+ +   + +  + P N++   + A         G  VE R + E   + K   
Sbjct: 529 KLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANSYTDIGEWGEAVEIREVMEARGVEKTAG 588

Query: 397 VSWNAMIGGCASHGFATEALE 417
            SW   IG C     A + L 
Sbjct: 589 CSW-VEIGTCMHSFLAGDXLH 608



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 127/306 (41%), Gaps = 73/306 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           +++ Y K   +A A +LF+E+P +DVVSW V+I G++    SG +EEA +LF      DI
Sbjct: 285 LVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQ---SGHMEEAMWLFYQMQLGDI 341

Query: 55  MPER----------------------------------DCVTWNTVISGYAKTGEMEEAL 80
            P                                    D V  + V+  Y+K GEM +AL
Sbjct: 342 EPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDAL 401

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP-------GRDSASLSALVSGLI 133
           R F  MP R++ SWN +I G+ QNG    A++ ++ M          +  +   ++    
Sbjct: 402 RAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCACS 461

Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRA----YNTLIVGYGQRGRVEEARKLFDKIPVNC 189
            NG L E      +   +      L++     Y  ++   G+ G ++EA  L   +P+  
Sbjct: 462 HNGLLKEGYSYFKEMVDK-----HLIKPTAEHYTCMVDLLGRAGLLQEAEALILALPIKP 516

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE---RDTFSWNTMISGYIHV 246
           D            V W +++      GDV   R   E +     R++ ++  + + Y  +
Sbjct: 517 DN-----------VMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANSYTDI 565

Query: 247 LDMEEA 252
            +  EA
Sbjct: 566 GEWGEA 571



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 139/343 (40%), Gaps = 70/343 (20%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           ++   N ++  Y  +  +  A ++   M +    S+NT++SGY     + EA  LF    
Sbjct: 49  HVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTILSGYFKFGLVSEAIKLFDGTS 108

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             D  +WN ++S                               GC  N      +  F++
Sbjct: 109 KRDCHSWNIVLS-------------------------------GCVKNHKLGEGLTHFMK 137

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGA 379
           M+    +PD  T++ I+       DL  G Q+H  + K     D  I   L+ MYA  G 
Sbjct: 138 MRCSSVRPDNFTYAIIIP----CCDLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGE 193

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           I +AR +F+ M   + +V+WNAMI   + +G   +++ LF+ +    +     T+  VL+
Sbjct: 194 IGDARKVFDGMP-SRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLN 252

Query: 440 ACA-----------HAGLVEEG----RQHFKSMVNEYGIEPRIEHFASL----------- 473
             A           H+ ++E G    R    ++VN Y     +   + L           
Sbjct: 253 EFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVS 312

Query: 474 --VDIVG--RHGRLEDAMDLIKGMPF---EPDKAVWGALLGAC 509
             V IVG  + G +E+AM L   M     EP+   +G LLGAC
Sbjct: 313 WTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGAC 355


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 210/691 (30%), Positives = 325/691 (47%), Gaps = 127/691 (18%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------RGSGFLEE 47
           +S   +  ++  AR L   MP+R+ VSWN +IS    S              R  G L  
Sbjct: 81  LSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPT 140

Query: 48  ARYLFDIMPE----------RDC-------------VTWNTVISGYAKTGEMEEALRLFN 84
              L  ++            R C                N ++  Y K G + +A+RLF 
Sbjct: 141 HFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFY 200

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD- 139
            M   N VS+ AM+ G  Q G + +A+  F RM       D  S+S+++    Q    D 
Sbjct: 201 GMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDY 260

Query: 140 ---------EAARVLV---KCGSRCDGGEDLVRAY------------------------N 163
                    +A   LV     GS    G  L+  Y                        N
Sbjct: 261 SVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWN 320

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
            LI G+GQ G   +A ++   +            F+ N V++++++    KA DV SAR 
Sbjct: 321 ILITGFGQEGSCAKAVEVLSLMQ--------EAGFEPNEVTYSNLLASCIKARDVHSARA 372

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSG------ 273
           +F+++      +WNT++SGY      ++   LF +M H    PD  T   ++S       
Sbjct: 373 MFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGI 432

Query: 274 -----------------------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
                                        Y++ G + +A   F +M ++++V WNS+I+G
Sbjct: 433 LDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISG 492

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPD 363
              +   + A   F QM+  G  P   +++S+++  S +  +  G QIH  V K     +
Sbjct: 493 LTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQN 552

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           V + +ALI MYA+CG + +AR+ F+ M ++KN+V+WN MI G A +G   +A+ELF+ M 
Sbjct: 553 VYVGSALIDMYAKCGNMDDARLFFDTM-MMKNIVAWNEMIHGYAQNGLGDKAVELFEYML 611

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
           + +  P  +TFI+VL+ C+H+GLV++    F SM N YGI P  EH+  L+D +GR GR 
Sbjct: 612 TTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRF 671

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
            +   LI  MP + D  +W  LL AC VH+N EL + AAE L +++P+N +PYVLL N+Y
Sbjct: 672 VEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIY 731

Query: 544 ADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A +GR  DA+ VR LM +  + K  GYSW+D
Sbjct: 732 ASLGRHGDASAVRALMSNRGVVKGRGYSWID 762



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 129/527 (24%), Positives = 238/527 (45%), Gaps = 92/527 (17%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G    A   F  +P  +  ++N  +S   + G+++ A  L   MP RN VSWN +IS  
Sbjct: 56  AGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISAL 115

Query: 102 LQN-GDVANAIEFFDRMPGR-------DSASLSALVSGLIQNGELDEAARVLVKCG---- 149
            ++ GD   A+E + RM            AS+ +   GL   G+      V VK G    
Sbjct: 116 ARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDAN 175

Query: 150 -----------SRCDGGEDLVR-----------AYNTLIVGYGQRGRVEEARKLFDKIPV 187
                      ++C    D VR           ++  ++ G  Q G +++A +LF ++  
Sbjct: 176 QFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARM-- 233

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAK--AGDVVSARE----------IFEQMLERDTFS 235
            C  G        + VS +S++   A+  A D   AR           +  +    D   
Sbjct: 234 -CRSG-----VPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHV 287

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD---------- 285
            N++I  Y   ++M+EA  +F  +P    ++WN +++G+ Q G+   A++          
Sbjct: 288 GNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGF 347

Query: 286 -------------------------FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                                     F ++ + ++ +WN++++G    + ++  I+LF +
Sbjct: 348 EPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRR 407

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGA 379
           MQ +  +PDR T + ILS  S +  L  G Q+H    + ++  D+ + + L+ MY++CG 
Sbjct: 408 MQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQ 467

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           I  AR IF +M   ++VV WN++I G   H    EA + FK MR   ++PT  ++ S+++
Sbjct: 468 IGIARSIFNKMT-ERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMIN 526

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           +C+    +  GRQ   + V + G +  +   ++L+D+  + G ++DA
Sbjct: 527 SCSRLSSIPHGRQ-IHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDA 572



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 178/390 (45%), Gaps = 47/390 (12%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           DTF  N ++  Y        A   F  +P P+  ++NA +S   + G+L+ A D    MP
Sbjct: 42  DTFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMP 101

Query: 292 QKNLVSWNSMIAG-CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
           ++N VSWN++I+    +  D   A++++ +M+ EG  P   T +S+LS   G+  L  G 
Sbjct: 102 RRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGR 161

Query: 351 QIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           + H +  K  +  +  + NAL+ MY +CG++ +A  +F  M    N VS+ AM+GG A  
Sbjct: 162 RCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMA-RPNEVSFTAMMGGLAQT 220

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACA-------------------HAGLVEEG 450
           G   +AL LF  M    V    ++  SVL ACA                   HA +V +G
Sbjct: 221 GSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKG 280

Query: 451 ---RQHF-KSMVNEYG----IEPRIEHFASL--VDIV---------GRHGRLEDAMDLIK 491
               QH   S+++ Y     ++  ++ F SL  V IV         G+ G    A++++ 
Sbjct: 281 FGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLS 340

Query: 492 GMP---FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
            M    FEP++  +  LL +C    +V  A+   +   K+   + T +  L + Y    +
Sbjct: 341 LMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFD---KISRPSVTTWNTLLSGYCQEEQ 397

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVDFSPC 578
             D  E+   M+  N++       V  S C
Sbjct: 398 HQDTIELFRRMQHQNVQPDRTTLAVILSSC 427


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 312/558 (55%), Gaps = 40/558 (7%)

Query: 51  LFDI-MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVAN 109
            FDI  P   C  WN++I GY++     +AL++FN MP R+ VSWN +IS F Q+G    
Sbjct: 204 FFDIERPSLFC--WNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQ 261

Query: 110 AIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTL 165
            +  F  M  +    +  +  +++S      +L   A +  +   R +   DLV   N L
Sbjct: 262 CLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARI-LRMEHSLDLVFG-NGL 319

Query: 166 IVGYGQRGRVEEARKLFDKIP--------------VNCDRGEGNV----RFKRNIVSWNS 207
           I  Y + G ++ A+++F  +               V+   GE  +    + +R+ V  + 
Sbjct: 320 IDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDE 379

Query: 208 MIM------C----YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
            I+      C    YA  G+++    I   M        N +I+ Y    D ++A  +F 
Sbjct: 380 FILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVG-NAIITMYAKCGDTDKADLVFR 438

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
            MP  +T++W AM++ +++ G++  A  +F  MP++N+V+WNSM++    N   E  +KL
Sbjct: 439 LMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKL 498

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYAR 376
           ++ M+  G +PD  TF++ +   + +  + LGMQ+    TK  +  +V + N+++TMY+R
Sbjct: 499 YVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSR 558

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG I EA+  F+ +   K+++SWNAM+   A +G   + ++ F+ M   +  P +I+++S
Sbjct: 559 CGLIKEAKNTFDSIDD-KDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVS 617

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           VLS C+H GLV EG+ +F SM   +GI P  EHF+ +VD++GR G LE A DLI+GMPF+
Sbjct: 618 VLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFK 677

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
           P+  VW ALLG+CRVH+++ LA+ AA+ LM+++ E S  YVLL NMY++ G  D+  ++R
Sbjct: 678 PNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMR 737

Query: 557 LLMKSNNIKKPTGYSWVD 574
            LMK   I+   G SW++
Sbjct: 738 KLMKVKGIRTSRGCSWIE 755



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 150/549 (27%), Positives = 247/549 (44%), Gaps = 102/549 (18%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR--NVVSWNAMISG 100
           G   +A  +F     R+  TWNT+I     +  M +A +LF+ MP R  + VSW  MISG
Sbjct: 57  GLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISG 116

Query: 101 FLQNGDVANAIEFFDRM---------------------------PGRDSASLSALVSGL- 132
           + QNG  + + E F  M                             R +  L ALVS L 
Sbjct: 117 YSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLG 176

Query: 133 ------IQNGELDEAARVLVKCGSRCDGGE----DLVR----AYNTLIVGYGQRGRVEEA 178
                 IQN        + VKCG   D  E    D+ R     +N++I GY Q     +A
Sbjct: 177 FGMETCIQN----SVVGMYVKCGD-VDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKA 231

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTF 234
            ++F+++P            +R+ VSWN++I  +++ G  V    +F +M  +    +  
Sbjct: 232 LQIFNRMP------------ERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFM 279

Query: 235 SWNTMISGYIHVLDMEEASNL---FVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRM 290
           ++ +++S      D++  ++L    ++M H  D +  N ++  YA+ G L+LA   FK +
Sbjct: 280 TYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSL 339

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
            + + +SWNS+I G       E A+ LF QM+      D     +IL + SG      G 
Sbjct: 340 REHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGE 399

Query: 351 QIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLL---------------- 393
            +H    K+ +    P+ NA+ITMYA+CG   +A ++F  M L                 
Sbjct: 400 LLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSG 459

Query: 394 --------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
                         +N+V+WN+M+     +GF+ E L+L+ SMRS  V P +ITF + + 
Sbjct: 460 DIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIR 519

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           ACA   +V+ G Q   +   ++G+   +    S+V +  R G +++A +    +  + D 
Sbjct: 520 ACADLAIVKLGMQ-VVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSID-DKDL 577

Query: 500 AVWGALLGA 508
             W A+L A
Sbjct: 578 ISWNAMLAA 586


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 201/617 (32%), Positives = 325/617 (52%), Gaps = 61/617 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY----ISSR----------GSGFLE 46
           +++ Y     +A AR  FD +  RDV +WN+MISGY     SS            SG   
Sbjct: 92  LVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQP 151

Query: 47  EARYLFDIMPERDCVT---------------WNTVISG-----YAKTGEMEEALRLFNSM 86
           + R    ++     VT               W+  ++      Y + G +  A  LF+ M
Sbjct: 152 DYRTFPSVLKACRNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEM 211

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLV 146
           P R++ SWNAMISG+ Q+G+   A+   D +   DS ++ +L+S   + G+ +    V +
Sbjct: 212 PTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRG--VTI 269

Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
              S   G E  +   N LI  Y + G +++ +K+FD++ V            R+++SWN
Sbjct: 270 HSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYV------------RDLISWN 317

Query: 207 SMIMCYAKAGDVVSAREIFEQM-LERDTFSWNTMIS--------GYIHVLDMEEASNLFV 257
           S+I  Y      + A  +F++M L R      T+IS        G I      +   L  
Sbjct: 318 SIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRK 377

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                D    NA+V  YA++G ++ A   F  +P K+++SWN++I+G   N     AI++
Sbjct: 378 GWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEM 437

Query: 318 FIQMQVEGEK--PDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMY 374
           +  M+ EG +   ++ T+ S+L   S    L  GM++H +++   +  DV +  +L  MY
Sbjct: 438 YNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMY 497

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
            +CG + +A  +F ++  + N V WN +I     HG   +A+ LFK M    V P +ITF
Sbjct: 498 GKCGRLDDALSLFYQIPRV-NSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITF 556

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           +++LSAC+H+GLV+EG   F+ M  +YGI P ++H+  +VD+ GR G+LE A++ IK MP
Sbjct: 557 VTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMP 616

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANE 554
            +PD ++WGALL ACRVH NV+L ++A+E L +VEPE+   +VLL NMYA  G+W+  +E
Sbjct: 617 LQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDE 676

Query: 555 VRLLMKSNNIKKPTGYS 571
           +R +     ++K  G+S
Sbjct: 677 IRSITSGKGLRKTPGWS 693



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 140/515 (27%), Positives = 240/515 (46%), Gaps = 62/515 (12%)

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
           RL  S   +NV     +++ +   G+VA A   FD +  RD  + + ++SG  + G   E
Sbjct: 76  RLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSE 135

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
               +++C S       L   Y T          ++  R + D   ++C   +    F  
Sbjct: 136 ----VIRCFSLFMLSSGLQPDYRTF------PSVLKACRNVTDGNKIHCLALK--FGFMW 183

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           ++    S+I  Y + G VV+AR +F++M  RD  SWN MISGY    + +EA  L   + 
Sbjct: 184 DVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR 243

Query: 261 HPDTLT-----------------------------------WNAMVSGYAQIGNLELALD 285
             D++T                                    N ++  YA+ G+L+    
Sbjct: 244 AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQK 303

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F RM  ++L+SWNS+I   E N+    AI LF +M++   +PD  T  S+ S+ S + +
Sbjct: 304 VFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGE 363

Query: 346 LHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           +     +     +    + D+ I NA++ MYA+ G +  AR +F  +   K+V+SWN +I
Sbjct: 364 IRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP-NKDVISWNTII 422

Query: 404 GGCASHGFATEALELFKSM--RSFKVLPTYITFISVLSACAHAGLVEEG-RQHFKSMVNE 460
            G A +GFA+EA+E++  M     ++     T++SVL AC+ AG + +G + H + + N 
Sbjct: 423 SGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKN- 481

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
            G+   +    SL D+ G+ GRL+DA+ L   +P   +   W  L+     H + E A +
Sbjct: 482 -GLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVM 539

Query: 521 AAEALMK--VEPENSTPYVLL----YNMYADVGRW 549
             + ++   V+P++ T   LL    ++   D G W
Sbjct: 540 LFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEW 574


>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 710

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 194/605 (32%), Positives = 314/605 (51%), Gaps = 86/605 (14%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G L +A+ +FD+ P  D V++N +ISGY K+G+++ A  LF+ MP +  VS+  MI GF 
Sbjct: 115 GLLVDAKSIFDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFS 174

Query: 103 QNGDVANAIEFFDRMPG----RDSASLSALVS---------------GLIQNGELDEAA- 142
           QN     A+E F +M       +  +++ LVS               GL+     +E   
Sbjct: 175 QNECWNQAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVL 234

Query: 143 ------RVLVKCGSRCDG-------GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
                 R+   C S  +         E  + ++N ++ GY + G V+ AR +F++IP   
Sbjct: 235 VSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIP--- 291

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIH 245
                     +++V+W ++I  Y +   +  A  ++  M+    E +      +ISG   
Sbjct: 292 ---------NKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGR 342

Query: 246 VLDMEEASNLF---VKM--------------------------------PHPDTLTWNAM 270
            + M E   L    VKM                                   +  +WNA+
Sbjct: 343 TMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNAL 402

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
           ++GY +   ++ A++ F  MP++++ SW++MI+G   N+    A++LF +M   G KP+ 
Sbjct: 403 IAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNE 462

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARCGAIVEARIIFEE 389
            T  S+LS  +    L  G   H+ V   ++     ++ A+I MYA+CG+I  A  +F E
Sbjct: 463 VTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYE 522

Query: 390 MKLLKNVVS-WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
           ++   + VS WNA+I G A HG A  +L++F  +    +    ITFI VL+AC H GLVE
Sbjct: 523 IREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACCHVGLVE 582

Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
            G++HF SM +E+ I+P I+H+  +VD++GR GRLE+A ++I+ MP + D  +WG LL A
Sbjct: 583 SGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMKADVVIWGTLLAA 642

Query: 509 CRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPT 568
           CR H NV++ + AAE L ++EP +    VLL NMYAD G+W+DA  VR  M+S+ +++  
Sbjct: 643 CRTHGNVDVGERAAENLARLEPSHGASRVLLSNMYADAGKWEDAFLVRRAMQSHRMQRLP 702

Query: 569 GYSWV 573
           GYS V
Sbjct: 703 GYSGV 707



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 137/266 (51%), Gaps = 7/266 (2%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
           L  + F  N++I+ Y     + +A ++F   P  D +++N M+SGY + G L+ A + F 
Sbjct: 97  LGSNNFIQNSLINMYGKCGLLVDAKSIFDVCPRSDPVSYNVMISGYVKSGQLDYACELFD 156

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            MP K  VS+ +MI G   N+ +  A++LF QM+  G  P+  T ++++S  S    +  
Sbjct: 157 EMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWA 216

Query: 349 GMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
              +H +V K +  + V ++  L+ MY  C ++VEAR +F+EM   KN+VSWN M+ G +
Sbjct: 217 CRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMP-EKNIVSWNVMLNGYS 275

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
             GF   A  +F+ + +  +    +T+ +++        + E    ++SM++  G EP  
Sbjct: 276 KAGFVDSARVVFERIPNKDL----VTWGTIIDGYVRVERINEALMMYRSMISA-GWEPND 330

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGM 493
                L+   GR   + +   L+  +
Sbjct: 331 VMMVDLISGCGRTMAMTEGQQLLSAV 356


>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 646

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 186/529 (35%), Positives = 294/529 (55%), Gaps = 72/529 (13%)

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
           N ++  + + G +  A + FD MP R  A  + ++SG  + G  +EA+ +         G
Sbjct: 138 NGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLF-----HVMG 192

Query: 155 GEDLVR---AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
            +++ R    + T+I G+ ++G ++ AR  FDK+P            +R++VSWN+M+  
Sbjct: 193 DQEISRNVITWTTMITGHAKKGNLKTARMYFDKMP------------ERSVVSWNAMLSG 240

Query: 212 YAKAGDVVSAREIFEQML-----ERDTFSWNTMIS----------------------GY- 243
           YA+ G       +F  ML     + D  +W T+IS                      G+ 
Sbjct: 241 YAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFR 300

Query: 244 ------IHVLDM-------EEASNLFVKM---PHPDTLTWNAMVSGYAQIGNLELALDFF 287
                   +LDM       E A  +F ++    +  ++ WNAM+S YA++G+L  A   F
Sbjct: 301 PNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLF 360

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMSSGIVDL 346
            +MPQ++ VSWNSMIAG   N +   AIKLF +M   E  KPD  T  S+ S    + +L
Sbjct: 361 DKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGEL 420

Query: 347 HLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
            LG     ++ +  I   + + N+LI+MY+RCG++ +A +IF+EM   +++VS+N +I G
Sbjct: 421 GLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMAT-RDLVSYNTLISG 479

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
            A HG   E++EL   M+   + P  IT+I++L+AC+HAGL+ EG++ F+S+       P
Sbjct: 480 FAEHGHGMESIELLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQRLFESIKF-----P 534

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
            ++H+A ++D++GR GRLE+AM LI+ MP EP   ++G+LL A  +H  VEL ++AA  L
Sbjct: 535 DVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKL 594

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            KVEP NS  YVLL N+YA  GRW D ++VR  M+   +KK TG SW++
Sbjct: 595 FKVEPHNSGNYVLLSNIYASAGRWKDGDKVRDTMRKQGVKKTTGLSWLE 643



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 149/486 (30%), Positives = 237/486 (48%), Gaps = 91/486 (18%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE----RDC 60
           Y K   +  ARKLFDEMP R V  WNVMISGY      G  EEA  LF +M +    R+ 
Sbjct: 144 YAKYGPIEFARKLFDEMPDRTVADWNVMISGYWK---CGNEEEASTLFHVMGDQEISRNV 200

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           +TW T+I+G+AK G ++ A   F+ MP R+VVSWNAM+SG+ Q G     I  F+ M   
Sbjct: 201 ITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDM--- 257

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDG--GEDLVRAYN-------------TL 165
                  L  G +Q  E      V+  C S  D    E +VR  +              L
Sbjct: 258 -------LSPGNVQPDETTWVT-VISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTAL 309

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           +  + + G +E A K+F+++          V   R+ V WN+MI  YA+ GD+ SAR +F
Sbjct: 310 LDMHAKCGNLEAAHKIFEQL---------GVYKYRSSVPWNAMISAYARVGDLPSARHLF 360

Query: 226 EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM-----PHPDTLT-------------- 266
           ++M +RDT SWN+MI+GY    +  +A  LF +M       PD +T              
Sbjct: 361 DKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGEL 420

Query: 267 ---------------------WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
                                +N+++S Y++ G+++ A+  F+ M  ++LVS+N++I+G 
Sbjct: 421 GLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGF 480

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP 365
             +     +I+L ++M+ +G +PDR T+ +IL+  S    L  G ++ + +     PDV 
Sbjct: 481 AEHGHGMESIELLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQRLFESIK---FPDVD 537

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL--FKSMR 423
               +I M  R G + EA  + + M +  +   + +++   + H    + +EL    + +
Sbjct: 538 HYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIH----KQVELGELAAAK 593

Query: 424 SFKVLP 429
            FKV P
Sbjct: 594 LFKVEP 599



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 119/480 (24%), Positives = 204/480 (42%), Gaps = 90/480 (18%)

Query: 138 LDEAARVLVKCGSRCD----GGEDLVRAYNTLIVGYGQRG-RVEEARKLFDKIPVNCDRG 192
           L +  R+L      C          VR +  ++  Y Q G R +    LF  +  +C+  
Sbjct: 42  LTQCTRLLAPSSYTCHIFHAATHPDVRVFTFMLKYYSQIGVRAQVPVSLFKHMLRHCN-- 99

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
                 K N  S+ S++M  A +  ++    + +   +RD +  N ++  Y     +E A
Sbjct: 100 -----IKPN-TSFYSVMMKSAGSESMLFLAHVLKSGYDRDHYVRNGILGIYAKYGPIEFA 153

Query: 253 SNLFVKMPHPDTLTWNAMVSGY-----------------------------------AQI 277
             LF +MP      WN M+SGY                                   A+ 
Sbjct: 154 RKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKK 213

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSI 336
           GNL+ A  +F +MP++++VSWN+M++G       E  I+LF  M   G  +PD  T+ ++
Sbjct: 214 GNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTV 273

Query: 337 LSMSSGIVDLHLGMQIHQMVTKTV--IPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +S  S + D  L   I + +  TV   P+  +  AL+ M+A+CG +  A  IFE++ + K
Sbjct: 274 ISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYK 333

Query: 395 ---------------------------------NVVSWNAMIGGCASHGFATEALELFKS 421
                                            + VSWN+MI G   +G + +A++LF+ 
Sbjct: 334 YRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEE 393

Query: 422 MRSFK-VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
           M S +   P  +T +SV SAC H G +  G     S++ E  I+  I  + SL+ +  R 
Sbjct: 394 MISSEDSKPDEVTMVSVFSACGHLGELGLGNWAV-SILKENHIQISISVYNSLISMYSRC 452

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G ++DA+ + + M    D   +  L+     H +      + E L+K++ +   P  + Y
Sbjct: 453 GSMQDAVLIFQEMATR-DLVSYNTLISGFAEHGH---GMESIELLLKMKEDGIEPDRITY 508



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 126/310 (40%), Gaps = 15/310 (4%)

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIG-NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           ++F    HPD   +  M+  Y+QIG   ++ +  FK M +   +  N+            
Sbjct: 57  HIFHAATHPDVRVFTFMLKYYSQIGVRAQVPVSLFKHMLRHCNIKPNTSFYSVMMKSAGS 116

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALIT 372
            ++     +   G   D +  + IL + +    +    ++   +    + D    N +I+
Sbjct: 117 ESMLFLAHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADW---NVMIS 173

Query: 373 MYARCGAIVEARIIFEEM---KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
            Y +CG   EA  +F  M   ++ +NV++W  MI G A  G    A   F  M    V  
Sbjct: 174 GYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSV-- 231

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
             +++ ++LS  A  G  EE  + F  M++   ++P    + +++      G    +  +
Sbjct: 232 --VSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESI 289

Query: 490 IKGMP----FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           ++ +     F P+  V  ALL       N+E A    E L   +  +S P+  + + YA 
Sbjct: 290 VRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYAR 349

Query: 546 VGRWDDANEV 555
           VG    A  +
Sbjct: 350 VGDLPSARHL 359


>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
 gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
          Length = 596

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 180/532 (33%), Positives = 301/532 (56%), Gaps = 33/532 (6%)

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN--------GD 106
           +P  D  +W   I  +++ G+ +EAL L+  M  + +      +S  L+         G 
Sbjct: 84  LPHPDSFSWGWAIRYFSQQGQFKEALYLYVQMQRQGLCPSTFAVSSALRAYARTTYKMGG 143

Query: 107 VANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166
           ++   E +           +ALV    + G+++ A +V  +        E  V ++N+++
Sbjct: 144 MSIHAESYKYGFSNCVYVQTALVDLYSKLGDMNTAQKVFDELA------EKNVVSWNSIL 197

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
            G+ + G + EA+++FD+I             K++++SWNSMI  YAK GD+  A  +F+
Sbjct: 198 SGHLKSGNLLEAQRVFDQIS------------KKDVISWNSMISGYAKIGDMDRACVLFQ 245

Query: 227 QMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
           QM E++  SWN +ISGY++  D++ A   F  MP  ++++W  M++GY++ G+++ A   
Sbjct: 246 QMPEKNYSSWNALISGYVNCGDIKSAWRFFDAMPERNSVSWITMIAGYSKCGDVDSASKL 305

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM--QVEGEKPDRHTFSSILSMSSGIV 344
           F ++ +K+L+++N+MI+    N     A+ LF +M       +PD+ T +S++S  S + 
Sbjct: 306 FDQIAKKDLLTFNAMISCFAQNSQPRKALWLFSEMLKAYANIQPDQMTLASVVSACSQLG 365

Query: 345 DLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
           DL     I   V    T I D  +  AL+ +YA+CG++ +A  +F  +   K+VV+++AM
Sbjct: 366 DLRFASWIESYVNDLGTEIDDQLVT-ALLDLYAKCGSVDKAYELFHGLNK-KDVVAYSAM 423

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I GC  +G   +A++LF  M   ++ P   TF  +L+AC HAGLV+EG + F SM  ++G
Sbjct: 424 ISGCGINGKVADAIKLFDMMVDAQIHPNLATFTGLLTACNHAGLVKEGYRFFSSM-KDHG 482

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           + P  +H+A +VD++GR GRL+DA +LIK MP +P   VWGALL AC VHNNVEL ++AA
Sbjct: 483 LVPSTDHYAIMVDLLGRAGRLQDAYELIKSMPMQPHSGVWGALLLACNVHNNVELGEIAA 542

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +    +E   +  Y LL N+Y+  GRWDD   +R L K   + K +G SW +
Sbjct: 543 QHCFNLETNATAYYSLLANIYSSAGRWDDVGRLRKLWKEKKLAKLSGCSWTE 594



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 174/329 (52%), Gaps = 42/329 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K  +M  A+K+FDE+ +++VVSWN ++SG++ S   G L EA+ +FD + ++D 
Sbjct: 165 LVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKS---GNLLEAQRVFDQISKKDV 221

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++WN++ISGYAK G+M+ A  LF  MP +N  SWNA+ISG++  GD+ +A  FFD MP R
Sbjct: 222 ISWNSMISGYAKIGDMDRACVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRFFDAMPER 281

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +S S   +++G  + G++D A+++  +   +     DL+  +N +I  + Q  +  +A  
Sbjct: 282 NSVSWITMIAGYSKCGDVDSASKLFDQIAKK-----DLL-TFNAMISCFAQNSQPRKALW 335

Query: 181 LFDKI----------------PVNCDRGEGNVRFKRNIVSW-------------NSMIMC 211
           LF ++                 V+     G++RF   I S+              +++  
Sbjct: 336 LFSEMLKAYANIQPDQMTLASVVSACSQLGDLRFASWIESYVNDLGTEIDDQLVTALLDL 395

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTW 267
           YAK G V  A E+F  + ++D  +++ MISG      + +A  LF  M     HP+  T+
Sbjct: 396 YAKCGSVDKAYELFHGLNKKDVVAYSAMISGCGINGKVADAIKLFDMMVDAQIHPNLATF 455

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLV 296
             +++     G ++    FF  M    LV
Sbjct: 456 TGLLTACNHAGLVKEGYRFFSSMKDHGLV 484



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 158/380 (41%), Gaps = 64/380 (16%)

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           IS Y+H        ++   +PHPD+ +W   +  ++Q G  + AL  + +M ++ L    
Sbjct: 73  ISQYVH--------SILYHLPHPDSFSWGWAIRYFSQQGQFKEALYLYVQMQRQGLCP-- 122

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH--LG-MQIHQMV 356
           S  A     + Y         M +  E   ++ FS+ + + + +VDL+  LG M   Q V
Sbjct: 123 STFAVSSALRAYARTTYKMGGMSIHAESY-KYGFSNCVYVQTALVDLYSKLGDMNTAQKV 181

Query: 357 TKTVIPDVPIN-NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
              +     ++ N++++ + + G ++EA+ +F+++   K+V+SWN+MI G A  G    A
Sbjct: 182 FDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQIS-KKDVISWNSMISGYAKIGDMDRA 240

Query: 416 LELFKSM-------------------------RSFKVLP-----TYITFISVLSACAHAG 445
             LF+ M                         R F  +P     ++IT I+  S C   G
Sbjct: 241 CVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRFFDAMPERNSVSWITMIAGYSKC---G 297

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-----PFEPDKA 500
            V+   + F  +  +      +  F +++    ++ +   A+ L   M       +PD+ 
Sbjct: 298 DVDSASKLFDQIAKK-----DLLTFNAMISCFAQNSQPRKALWLFSEMLKAYANIQPDQM 352

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL-LYNMYADVGRWDDANEVRLLM 559
              +++ AC    ++  A      +  +  E     V  L ++YA  G  D A E   L 
Sbjct: 353 TLASVVSACSQLGDLRFASWIESYVNDLGTEIDDQLVTALLDLYAKCGSVDKAYE---LF 409

Query: 560 KSNNIKKPTGYSWVDFSPCG 579
              N K    YS +  S CG
Sbjct: 410 HGLNKKDVVAYSAM-ISGCG 428


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 172/494 (34%), Positives = 279/494 (56%), Gaps = 29/494 (5%)

Query: 72  KTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF-----DRMPGRDSASLS 126
           +   ++ A  LF+ +    +VSWN +I  +++N    +AI  F     D +P  DS +L 
Sbjct: 61  RINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFVP--DSFTLP 118

Query: 127 ALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
            ++ G  + G L E  ++   ++K G   D         ++L+  Y + G +E  RK+FD
Sbjct: 119 CVLKGCARLGALQEGKQIHGLVLKIGFGVDK-----FVLSSLVSMYSKCGEIELCRKVFD 173

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           ++              +++VSWNS+I  YA+ G++  A E+FE+M E+D+FSW  +I G 
Sbjct: 174 RME------------DKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGL 221

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                +E A ++F +MP  ++++WNAM++GY + G+   A + F +MP+++LV+WNSMI 
Sbjct: 222 SKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMIT 281

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-P 362
           G E NK +  A+KLF  M  E   P+  T    +S +SG+V L  G  +H  + K+    
Sbjct: 282 GYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKT 341

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           D  +   LI MY++CG++  A  +F  +   K +  W ++I G   HG   + LELF  M
Sbjct: 342 DGVLGTLLIEMYSKCGSVKSALRVFRSIPK-KKLGHWTSVIVGLGMHGLVEQTLELFDEM 400

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
               + P  ITFI VL+AC+HAG  E+  ++FK M  +YGI+P IEH+  L+D++ R G 
Sbjct: 401 CRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGH 460

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           LE+A D I+ MP + +K +W +LL   R H N+ + + AA+ L+ + P+ +  YV+L NM
Sbjct: 461 LEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNM 520

Query: 543 YADVGRWDDANEVR 556
           YA  G W+   +VR
Sbjct: 521 YAAAGLWEKVRQVR 534



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 207/442 (46%), Gaps = 63/442 (14%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGS------------------------------- 42
           A  LFD + +  +VSWN++I  YI ++ S                               
Sbjct: 68  AHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFVPDSFTLPCVLKGCARL 127

Query: 43  GFLEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMI 98
           G L+E + +  ++ +     D    ++++S Y+K GE+E   ++F+ M  ++VVSWN++I
Sbjct: 128 GALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLI 187

Query: 99  SGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
            G+ + G++  A+E F+ MP +DS S + L+ GL ++G+L+ A  V  +   R       
Sbjct: 188 DGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNS----- 242

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
             ++N +I GY + G    A++LFD++P            +R++V+WNSMI  Y +    
Sbjct: 243 -VSWNAMINGYMKAGDSNTAKELFDQMP------------ERSLVTWNSMITGYERNKQF 289

Query: 219 VSAREIFEQMLERDTFSWNTMI-------SGYIHVLDMEEASNLFVKMP-HPDTLTWNAM 270
             A ++FE ML  D     T I       SG + +       +  VK     D +    +
Sbjct: 290 TKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLL 349

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
           +  Y++ G+++ AL  F+ +P+K L  W S+I G   +   E  ++LF +M   G KP  
Sbjct: 350 IEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHA 409

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFE 388
            TF  +L+  S         +  +M+T    + P +     LI +  R G + EA+   E
Sbjct: 410 ITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIE 469

Query: 389 EMKLLKNVVSWNAMIGGCASHG 410
            M +  N V W +++ G   HG
Sbjct: 470 RMPIKANKVIWTSLLSGSRKHG 491



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 168/353 (47%), Gaps = 70/353 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++S Y K  E+   RK+FD M  +DVVSWN +I GY      G +E A  +F+ MPE+D 
Sbjct: 155 LVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARC---GEIELALEMFEEMPEKDS 211

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +W  +I G +K+G++E A  +F+ MP RN VSWNAMI+G+++ GD   A E FD+MP R
Sbjct: 212 FSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPER 271

Query: 121 DSASLSALVSGLIQNGELDEAARV------------------------------------ 144
              + +++++G  +N +  +A ++                                    
Sbjct: 272 SLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVH 331

Query: 145 --LVKCGSRCDGGEDLVRAYNTLIVG-YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +VK G + DG         TL++  Y + G V+ A ++F  IP            K+ 
Sbjct: 332 SYIVKSGFKTDG------VLGTLLIEMYSKCGSVKSALRVFRSIP------------KKK 373

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFV 257
           +  W S+I+     G V    E+F++M    L+    ++  +++   H    E+A   F 
Sbjct: 374 LGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFK 433

Query: 258 KMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAG 304
            M +     P    +  ++    + G+LE A D  +RMP K N V W S+++G
Sbjct: 434 MMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSG 486



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
           +H L ++ AS     + HP   +    +    +I NL+ A   F  + +  LVSWN +I 
Sbjct: 34  LHALSIKTAS-----LNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIK 88

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP- 362
               N+    AI LF ++  +   PD  T   +L   + +  L  G QIH +V K     
Sbjct: 89  CYIENQRSNDAIALFCKLLCDF-VPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGV 147

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           D  + ++L++MY++CG I   R +F+ M+  K+VVSWN++I G A  G    ALE+F+ M
Sbjct: 148 DKFVLSSLVSMYSKCGEIELCRKVFDRME-DKDVVSWNSLIDGYARCGEIELALEMFEEM 206

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
                     ++  ++   + +G +E  R  F  M
Sbjct: 207 PE----KDSFSWTILIDGLSKSGKLEAARDVFDRM 237


>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
 gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 189/562 (33%), Positives = 303/562 (53%), Gaps = 62/562 (11%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEAL 80
           D   WN +I  Y  S G+  +  A  LF +M E     D  +++ ++   A+   +EE  
Sbjct: 89  DPFLWNAVIKSY--SHGNEPVR-ALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGK 145

Query: 81  RLFNSM----PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG 136
           ++   +       N+   N +I+ +L+ GD+  A + FDRMP +DS S            
Sbjct: 146 QIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVS------------ 193

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
                                    YN++I GY + G ++ AR+LFD +P+         
Sbjct: 194 -------------------------YNSMIDGYVKSGTIDLARELFDSMPLE-------- 220

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
              +N++SWNSM+  +A+  D +  A E+FE+M ERD  SWNT+I G+     +E A +L
Sbjct: 221 --DKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSL 278

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           F +MP  D ++W+ M+ GYA++G++++A   F  MP K++V++N+++AG   N  Y  A+
Sbjct: 279 FNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEAL 338

Query: 316 KLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV-PINNALITM 373
           ++F +MQ +    PD  T    LS  S +  +     +H    +  I     +  ALI M
Sbjct: 339 EIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHNYFLENGISVTGKVAVALIDM 398

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           Y++CG+I  A +IF+ +   K +  WNAMI G A +G    A  +   M    V P  IT
Sbjct: 399 YSKCGSIENAILIFDGVDQ-KGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSVKPDGIT 457

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           FI VL+ACAHAGLV+EG   F+ M   + +EP+++H+  +VDI+G+ G +E A+  I+ M
Sbjct: 458 FIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHYGCMVDILGKAGLVEGALKFIEEM 517

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           P EP+  +W  LL AC+ H N  + ++ A+ LM ++  NS+ YVLL N+YA +G W  A+
Sbjct: 518 PIEPNDIIWRTLLSACQNHENFTIGELIAKHLMTMDSCNSSSYVLLSNIYARLGLWSAAS 577

Query: 554 EVRLLMKSNNIKKPTGYSWVDF 575
           +VR++MK  N+ K  G SW++ 
Sbjct: 578 KVRMMMKKQNLTKVPGCSWIEL 599



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 203/416 (48%), Gaps = 44/416 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRD--VVSWNVMISGYISSR-GSGFLEEARYLFDIMPE 57
           MI GYVK   +  AR+LFD MP  D  ++SWN M+ G+  ++ G G   E   LF+ MPE
Sbjct: 197 MIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALE---LFEKMPE 253

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           RD V+WNT+I G+AK G +E A  LFN MP R+V+SW+ MI G+ + GD+  A   FD M
Sbjct: 254 RDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEM 313

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY---GQRGR 174
           P +D  + + +++G  QNG   EA  +  +   + +   D      TL+V      Q G 
Sbjct: 314 PDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPD----ETTLVVALSAISQLGH 369

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
           VE+A  + +    N     G V          ++I  Y+K G + +A  IF+ + ++   
Sbjct: 370 VEKAASMHNYFLENGISVTGKVAV--------ALIDMYSKCGSIENAILIFDGVDQKGID 421

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
            WN MISG       + A  + ++M      PD +T+  +++  A  G ++  L  F+ M
Sbjct: 422 HWNAMISGMARNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELM 481

Query: 291 PQKNLVSWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            + + +       GC  +        EGA+K   +M +E   P+   + ++LS       
Sbjct: 482 RKVHKLEPKLQHYGCMVDILGKAGLVEGALKFIEEMPIE---PNDIIWRTLLSACQN--- 535

Query: 346 LHLGMQIHQMVTKTVIPDVPINNA----LITMYARCG---AIVEARIIFEEMKLLK 394
            H    I +++ K ++     N++    L  +YAR G   A  + R++ ++  L K
Sbjct: 536 -HENFTIGELIAKHLMTMDSCNSSSYVLLSNIYARLGLWSAASKVRMMMKKQNLTK 590



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 153/350 (43%), Gaps = 87/350 (24%)

Query: 220 SAREIFEQMLERDTFSWNTMISGYIH---------------------------------- 245
           + + I    L+ D F WN +I  Y H                                  
Sbjct: 77  AVQRIRRNHLDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACA 136

Query: 246 --------------VLDMEEASNLFV----------------------KMPHPDTLTWNA 269
                         ++ +E  SNLF+                      +MP  D++++N+
Sbjct: 137 RVCLVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNS 196

Query: 270 MVSGYAQIGNLELALDFFKRMP--QKNLVSWNSMIAGCETNKDYEG-AIKLFIQMQVEGE 326
           M+ GY + G ++LA + F  MP   KNL+SWNSM+ G    KD  G A++LF +M     
Sbjct: 197 MIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKM----- 251

Query: 327 KPDRH--TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEAR 384
            P+R   ++++I+   +    +      H +  +    DV   + +I  YA+ G I  AR
Sbjct: 252 -PERDLVSWNTIIGGFAKCGRIEFA---HSLFNRMPKRDVISWSNMIDGYAKLGDIKVAR 307

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-RSFKVLPTYITFISVLSACAH 443
            +F+EM   K+VV++N ++ G A +G+ TEALE+F  M R   + P   T +  LSA + 
Sbjct: 308 TLFDEMP-DKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQ 366

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
            G VE+        + E GI    +   +L+D+  + G +E+A+ +  G+
Sbjct: 367 LGHVEKAASMHNYFL-ENGISVTGKVAVALIDMYSKCGSIENAILIFDGV 415


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 209/615 (33%), Positives = 313/615 (50%), Gaps = 96/615 (15%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G L  AR  FD +PERDCV WN ++ G  K G+++ A+RLF +M A       A ++ F
Sbjct: 189 AGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACF 248

Query: 102 LQ----NGD---------------------VANAI--------------EFFDRMPGRDS 122
           L     + D                     VAN +                F+ MP  D 
Sbjct: 249 LSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDL 308

Query: 123 ASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            + + ++SG +QNG   EA  +   + + G+R D    LV    +L+        +++ +
Sbjct: 309 VTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDS-ITLV----SLLPALTDLNGLKQGK 363

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           ++   I  NC           ++   ++++  Y K  DV  A+ +++     D    +TM
Sbjct: 364 EVHGYIVRNC--------VNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTM 415

Query: 240 ISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSG---------------------- 273
           ISGY+     EEA  +F  +      P+ +T  +++ G                      
Sbjct: 416 ISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAY 475

Query: 274 -------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                        YA+ G L+L+   F +M QK+ V+WNSMI+    N   + A+ LF Q
Sbjct: 476 ERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQ 535

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGA 379
           M +EG K +  T S+ LS  + +  ++ G +IH +  K  I  D+   +ALI MYA+CG 
Sbjct: 536 MCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGN 595

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           +  A  +FE M   KN VSWN++I    +HG   E++ L   M+     P ++TF++++S
Sbjct: 596 LELALRVFEFMPD-KNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALIS 654

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           ACAHAGLVEEG Q F+ M  +Y I PR+EHFA +VD+  R G+L+ A+  I  MPF+PD 
Sbjct: 655 ACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDA 714

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
            +WGALL ACRVH NVELA +A++ L K++P NS  YVL+ N+ A  GRWD  ++VR LM
Sbjct: 715 GIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLM 774

Query: 560 KSNNIKKPTGYSWVD 574
           K N I K  GYSWVD
Sbjct: 775 KDNKILKIPGYSWVD 789



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 214/458 (46%), Gaps = 37/458 (8%)

Query: 70  YAKTGEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGR 120
           Y       +A+ +F+++P   A + + WN +I GF   G    A+ F+ +M      P  
Sbjct: 80  YVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSP 139

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D+ +L  +V      G +      LV   +R  G  + V   + L+  Y   G +  AR 
Sbjct: 140 DAHTLPYVVKSCAALGAMSLGR--LVHRTARAIGLANDVYVGSALVKMYADAGLLGNARD 197

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            FD IP            +R+ V WN M+    KAGDV  A  +F  M           +
Sbjct: 198 AFDGIP------------ERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATL 245

Query: 241 SGYIHV-------LDMEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           + ++ V       L   +  +L VK    P+    N +++ YA+   L+ A   F+ MPQ
Sbjct: 246 ACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQ 305

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
            +LV+WN MI+GC  N  +  A  LF  MQ  G +PD  T  S+L   + +  L  G ++
Sbjct: 306 DDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEV 365

Query: 353 HQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H  + +  +  DV + +AL+ +Y +C  +  A+ +++  + + +VV  + MI G   +G 
Sbjct: 366 HGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAI-DVVIGSTMISGYVLNGM 424

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHF 470
           + EAL++F+ +    + P  +T  SVL  CA    +  G+Q H   + N Y  +  +E  
Sbjct: 425 SEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVE-- 482

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           ++L+D+  + GRL+ +  +   M  + D+  W +++ +
Sbjct: 483 SALMDMYAKCGRLDLSHYIFLKMS-QKDEVTWNSMISS 519



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 140/546 (25%), Positives = 219/546 (40%), Gaps = 137/546 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSG---- 43
           ++  Y     +  AR  FD +P+RD V WNVM+ G I +             R SG    
Sbjct: 182 LVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPN 241

Query: 44  ------FLEEARYLFDIMP-------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                 FL       D++              E +    NT+++ YAK   +++A RLF 
Sbjct: 242 FATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFE 301

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFF---DRMPGR-DSASLSALVSGLIQNGELDE 140
            MP  ++V+WN MISG +QNG    A   F    R   R DS +L +L+  L     L +
Sbjct: 302 LMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQ 361

Query: 141 AARV------------------LVKCGSRC------DGGEDLVRAYN-----TLIVGYGQ 171
              V                  LV    +C          D  RA +     T+I GY  
Sbjct: 362 GKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVL 421

Query: 172 RGRVEEARKLFDKIPVNCDRG------------------------EGNV---RFKRNIVS 204
            G  EEA ++F  +   C +                          G V    ++R    
Sbjct: 422 NGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYV 481

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF-------- 256
            ++++  YAK G +  +  IF +M ++D  +WN+MIS +      +EA +LF        
Sbjct: 482 ESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGI 541

Query: 257 ------------------------------VKMP-HPDTLTWNAMVSGYAQIGNLELALD 285
                                         +K P   D    +A++  YA+ GNLELAL 
Sbjct: 542 KYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALR 601

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F+ MP KN VSWNS+I+    +   + ++ L   MQ EG KPD  TF +++S  +    
Sbjct: 602 VFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGL 661

Query: 346 LHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           +  G+Q+ Q +TK   + P +     ++ +Y+R G + +A     +M    +   W A++
Sbjct: 662 VEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALL 721

Query: 404 GGCASH 409
             C  H
Sbjct: 722 HACRVH 727


>gi|302801466|ref|XP_002982489.1| hypothetical protein SELMODRAFT_51832 [Selaginella moellendorffii]
 gi|300149588|gb|EFJ16242.1| hypothetical protein SELMODRAFT_51832 [Selaginella moellendorffii]
          Length = 526

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 180/552 (32%), Positives = 303/552 (54%), Gaps = 54/552 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  + +   +  A+  FD MPQ D+VSWN +IS +      G  EEA+ +F  M  RD 
Sbjct: 24  LLGAFAQNAHIDDAKTTFDRMPQWDLVSWNALISAFAHH---GHSEEAKAMFLAMENRDV 80

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W++VI  YA++G +++A ++ + +P  +V S   M++ F QNG +  A   FDRM  R
Sbjct: 81  VSWSSVIKAYAQSGLVDQASQVMDRIPKWDVQSITGMVAAFAQNGHLDAASAMFDRMEER 140

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +    +AL++GL  + +++EA  +      R   G D++ A+N +I  Y Q G    A+ 
Sbjct: 141 NVVVWTALITGLSLSYQIEEAETIF-----RLIPGRDVI-AWNAMITAYSQNGDPHTAKL 194

Query: 181 LFDKIP---VNCDRGEG--NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
           LFD +P   V+ +   G  +   + +++SWN+++  YA  G  + AR   + M +RD  S
Sbjct: 195 LFDVMPERNVDLESAVGIFSKMPQHDLISWNALVSAYAANGHPLQARVSLDSMPKRDVVS 254

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           W T+++GY    D+++A +   +MP  D +TWN M+S YA IGN  +A   F    Q+NL
Sbjct: 255 WTTVVAGYTQTGDIDKAISTMNRMPMWDLVTWNVMISAYAGIGNCVIAKKMFDDKQQRNL 314

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           +SWN +IA      +   A+  F +M      P+  + S I                   
Sbjct: 315 ISWNGLIAAYAQTGNLALAVASFHKM------PEWDSISWI------------------- 349

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
                         LI  YA+CG + +A  +FE++   +  ++++A++G  A  G  +EA
Sbjct: 350 -------------GLIVAYAQCGHVSDACAMFEDIPS-RGTLAFSAILGAYAHTGHHSEA 395

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
            E+F++M+   V PT ++++++L+  ++ G+++E R+ F  M++  GI P I+HF S+VD
Sbjct: 396 GEVFRAMQLEGVRPTKVSYMALLTGFSYGGMLDECREAFVGMLSA-GISPAIQHFRSVVD 454

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++GR     DA +LI+ MP+  D  VW +LLGACR+H ++E A +AA  + ++EP+ S P
Sbjct: 455 VIGRARDPGDAEELIRTMPYVADSVVWTSLLGACRMHGDLERAALAARKVTELEPDISVP 514

Query: 536 YVLLYNMYADVG 547
           YVLL  M    G
Sbjct: 515 YVLLAEMIKSEG 526


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 196/541 (36%), Positives = 282/541 (52%), Gaps = 66/541 (12%)

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALV 129
           G +  AL LF S+   N   WN MI G   +     AI+F+ RM       +S +   L+
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 130 SGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
               + G   E  ++   ++K G   D        + +LI  Y Q G +  A  +F K  
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDP-----FVHTSLINMYAQNGELGYAELVFSKSS 194

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246
           +            R+ VS+ ++I  Y   G +  AR +FE++  RD  SWN MI+GY   
Sbjct: 195 L------------RDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQS 242

Query: 247 LDMEEASNLFVKM------PHPDTL--------------------TW------------- 267
              EEA   F +M      P+  T+                    +W             
Sbjct: 243 GRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLV 302

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           NA++  Y++ G+L+ A D F+ + +K+++SWN MI G      Y+ A+ LF +MQ    +
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVE 362

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI--PDVPINNALITMYARCGAIVEARI 385
           P+  TF SIL   + +  L LG  IH  + K  +   +  +  +LI MYA+CG I  A+ 
Sbjct: 363 PNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQ 422

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F  MK  K++ SWNAMI G A HG A  ALELF+ MR     P  ITF+ VLSAC+HAG
Sbjct: 423 VFAGMKP-KSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAG 481

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           LVE GRQ F SMV +Y I P+++H+  ++D++GR G  ++A  L+K M  +PD A+WG+L
Sbjct: 482 LVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSL 541

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           LGACRVH NVEL + AA+ L ++EPEN   YVLL N+YA  GRWDD   +R  +    +K
Sbjct: 542 LGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMK 601

Query: 566 K 566
           K
Sbjct: 602 K 602



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 129/474 (27%), Positives = 210/474 (44%), Gaps = 80/474 (16%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISG-YISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++ A  LF+ + Q +   WN MI G  +SS   G ++    +     E +  T+  ++  
Sbjct: 82  LSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKS 141

Query: 70  YAKTGEMEEALRLFNSMPARNVVS----WNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
            AK G  +E  ++   +    + S      ++I+ + QNG++  A   F +   RD+ S 
Sbjct: 142 CAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSF 201

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           +AL++G    G LD+A R+  +   R     D V ++N +I GY Q GR EEA   F ++
Sbjct: 202 TALITGYTLRGCLDDARRLFEEIPVR-----DAV-SWNAMIAGYAQSGRFEEALAFFQEM 255

Query: 186 P-VNCDRGE-------------GNVRFKRNIVSW-------------NSMIMCYAKAGDV 218
              N    E             G++     + SW             N++I  Y+K GD+
Sbjct: 256 KRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDL 315

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT-------- 266
             AR++FE + E+D  SWN MI GY H+   +EA  LF KM      P+ +T        
Sbjct: 316 DKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPAC 375

Query: 267 ----------------------------WNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
                                       W +++  YA+ GN+E A   F  M  K+L SW
Sbjct: 376 AYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSW 435

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           N+MI+G   +     A++LF QM+ EG +PD  TF  +LS  S    + LG Q    + +
Sbjct: 436 NAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVE 495

Query: 359 --TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
              + P +     +I +  R G   EA  + + M++  +   W +++G C  HG
Sbjct: 496 DYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHG 549



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 158/399 (39%), Gaps = 76/399 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+GY  R  +  AR+LF+E+P RD VSWN MI+GY     SG  EEA   F  M   + 
Sbjct: 204 LITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQ---SGRFEEALAFFQEMKRANV 260

Query: 61  V--------------------------TW-------------NTVISGYAKTGEMEEALR 81
                                      +W             N +I  Y+K G++++A  
Sbjct: 261 APNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARD 320

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           LF  +  ++++SWN MI G+        A+  F +M       +  +  +++      G 
Sbjct: 321 LFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGA 380

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           LD    +      +  G  +    + +LI  Y + G +E A+++F  +            
Sbjct: 381 LDLGKWIHAYIDKKFLGLTN-TSLWTSLIDMYAKCGNIEAAKQVFAGMK----------- 428

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
             +++ SWN+MI   A  G    A E+F QM     E D  ++  ++S   H   +E   
Sbjct: 429 -PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGR 487

Query: 254 NLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCET 307
             F  M       P    +  M+    + G  + A    K M  K +   W S++  C  
Sbjct: 488 QCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRV 547

Query: 308 NKDYE----GAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           + + E     A  LF   ++E E P  +   S +  ++G
Sbjct: 548 HGNVELGEFAAKHLF---ELEPENPGAYVLLSNIYATAG 583


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 175/525 (33%), Positives = 290/525 (55%), Gaps = 29/525 (5%)

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
           + I+  A+ G +  A R+F+     N  +WNAM  G+ Q     + +  F RM    ++ 
Sbjct: 59  SFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASP 118

Query: 125 LSALVSGLIQNGELDEAARV--LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV--EEARK 180
                  ++++     AA+    V C     G +        LI  Y  RG V   +A K
Sbjct: 119 NCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYK 178

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +F ++              +N+ +W +++  +    D+VSAR +F+   +RD   WN ++
Sbjct: 179 VFAEMR------------DKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVV 226

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           SGYI + DM  A  LF +MP  D ++WN ++SGYA  G +E  +  F+ MP +N+ SWN 
Sbjct: 227 SGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNG 286

Query: 301 MIAGCETNKDYEGAIKLFIQMQV--EGEK---------PDRHTFSSILSMSSGIVDLHLG 349
           +I G   N  ++ A++ F +M V  EGE          P+ +T  ++L+  S + DL +G
Sbjct: 287 LIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMG 346

Query: 350 MQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
             +H          ++ + NALI MYA+CG I +A  +F+ + + K++++WN +I G A 
Sbjct: 347 KWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDV-KDIITWNTIINGLAM 405

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           HG   +AL LF+ M+     P  +TF+ +LSAC H GLV  G  HF+SMV++Y I P+IE
Sbjct: 406 HGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIE 465

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528
           H+  +VD++GR G ++ A+D+++ MP EPD  +W ALLGACR++ NVE+A++A + L+++
Sbjct: 466 HYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIEL 525

Query: 529 EPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           EP N   +V++ N+Y D+GR  D   +++ M+    +K  G S +
Sbjct: 526 EPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVI 570



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 118/363 (32%), Positives = 187/363 (51%), Gaps = 53/363 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ +V  R+M  AR+LFD  PQRDVV WNV++SGYI     G +  AR LFD MP+RD 
Sbjct: 194 IVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIE---LGDMVAARELFDRMPDRDV 250

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
           ++WNTV+SGYA  GE+E  ++LF  MP RNV SWN +I G+++NG    A+E F RM   
Sbjct: 251 MSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVL 310

Query: 118 ------PGRDSA------SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTL 165
                  G D        ++ A+++   + G+L+    V V   S    G   V   N L
Sbjct: 311 VEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVG--NAL 368

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           I  Y + G +E+A  +FD + V            ++I++WN++I   A  G V  A  +F
Sbjct: 369 IDMYAKCGVIEKALDVFDGLDV------------KDIITWNTIINGLAMHGHVADALSLF 416

Query: 226 EQML---ER-DTFSWNTMIS----------GYIHVLDMEEASNLFVKMPHPDTLTWNAMV 271
           E+M    ER D  ++  ++S          G +H   M +  ++  ++ H     +  MV
Sbjct: 417 ERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEH-----YGCMV 471

Query: 272 SGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
               + G ++ A+D  ++MP + + V W +++  C   K+ E A +L +Q  +E E  + 
Sbjct: 472 DLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVEMA-ELALQRLIELEPNNP 530

Query: 331 HTF 333
             F
Sbjct: 531 GNF 533



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 200/457 (43%), Gaps = 85/457 (18%)

Query: 13  KARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----PERDCVTWNTVI- 67
           +AR++FD+  Q +  +WN M  GY  +       +   LF  M       +C T+  V+ 
Sbjct: 72  RARRVFDKTAQPNGATWNAMFRGYAQANCH---LDVVVLFARMHRAGASPNCFTFPMVVK 128

Query: 68  ----SGYAKTGE--------------------------------MEEALRLFNSMPARNV 91
               +  AK GE                                + +A ++F  M  +NV
Sbjct: 129 SCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNV 188

Query: 92  VSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSR 151
            +W A+++  +   D+ +A   FD  P RD    + +VSG I+ G++  A  +  +   R
Sbjct: 189 FAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRMPDR 248

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
                  V ++NT++ GY   G VE   KLF+++PV            RN+ SWN +I  
Sbjct: 249 ------DVMSWNTVLSGYATNGEVESFVKLFEEMPV------------RNVYSWNGLIGG 290

Query: 212 YAKAGDVVSAREIFEQMLER---------------DTFSWNTMISGYIHVLDMEEASNLF 256
           Y + G    A E F++ML                 + ++   +++    + D+E    + 
Sbjct: 291 YVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVH 350

Query: 257 VKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           V         +    NA++  YA+ G +E ALD F  +  K++++WN++I G   +    
Sbjct: 351 VYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVA 410

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTK-TVIPDVPINNA 369
            A+ LF +M+  GE+PD  TF  ILS  +  G+V   L +    MV   +++P +     
Sbjct: 411 DALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGL-LHFQSMVDDYSIVPQIEHYGC 469

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           ++ +  R G I +A  I  +M +  + V W A++G C
Sbjct: 470 MVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGAC 506



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 146/377 (38%), Gaps = 95/377 (25%)

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
           +I    LE + +   + I+    +  +  A  +F K   P+  TWNAM  GYAQ      
Sbjct: 44  QIVTHGLEGNDYVTPSFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLD 103

Query: 283 ALDFFKRMPQK----NLVSWNSMIAGCET-NKDYEG------------------------ 313
            +  F RM +     N  ++  ++  C T N   EG                        
Sbjct: 104 VVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIH 163

Query: 314 ------------AIKLFIQMQVEGEKPDRHTF--SSILSMSSGIVDLHLGMQIHQMVTKT 359
                       A K+F +M+      D++ F  ++I++      D+    ++  +  + 
Sbjct: 164 MYSLRGGVFVADAYKVFAEMR------DKNVFAWTAIVAAHVACRDMVSARRLFDLAPQR 217

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEM-------------------------KL-- 392
              DV + N +++ Y   G +V AR +F+ M                         KL  
Sbjct: 218 ---DVVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFE 274

Query: 393 ---LKNVVSWNAMIGGCASHGFATEALELFKSMRSF-----------KVLPTYITFISVL 438
              ++NV SWN +IGG   +G   EALE FK M               V+P   T ++VL
Sbjct: 275 EMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVL 334

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           +AC+  G +E G+          G +  +    +L+D+  + G +E A+D+  G+  + D
Sbjct: 335 TACSRLGDLEMGKW-VHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVK-D 392

Query: 499 KAVWGALLGACRVHNNV 515
              W  ++    +H +V
Sbjct: 393 IITWNTIINGLAMHGHV 409


>gi|357490817|ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517031|gb|AES98654.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 204/653 (31%), Positives = 333/653 (50%), Gaps = 91/653 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGF---------------- 44
           ++S Y K   +  ARK+F+EM  R++ +W+ MI G   ++  G                 
Sbjct: 123 LVSMYAKCGLLGMARKVFNEMSVRNLFTWSAMIGGCSRNKSWGEVVGLFYAMMRDGVLPD 182

Query: 45  ----------------LEEARYLFDIMPERDCVTW-----NTVISGYAKTGEMEEALRLF 83
                           LE  R +  ++  R  + W     N++++ YAK GEM+ A ++F
Sbjct: 183 EFLLPKVLQACGKCRDLETGRLIHSMVIRRG-MRWSKHLRNSIMAVYAKCGEMDCAKKIF 241

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS-----ALVSGLIQNGEL 138
           + M  R+ V+WNAMISGF QNG++  A ++FD M  +D    S      L+S   Q G  
Sbjct: 242 DCMDERDSVAWNAMISGFCQNGEIGQAQKYFDAMQ-KDGVEPSLVTWNILISCYNQLGHC 300

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG---- 194
           D A  ++ K      G    V  + ++I G+ Q+GR+  A  L  ++ +           
Sbjct: 301 DLAIDLMRK--MEWFGIAPDVYTWTSMISGFTQKGRISHALDLLKEMFLAGVEANNITIA 358

Query: 195 -------------------NVRFKRNIVS----WNSMIMCYAKAGDVVSAREIFEQMLER 231
                              ++  K N+V      NS+I  Y K GD+ +A+ IF+ M ER
Sbjct: 359 SAASACAALKSLSMGLEIHSIAVKMNLVDNVLVGNSLIDMYCKCGDLKAAQHIFDMMSER 418

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFF 287
           D +SWN++I GY       +A  LF+KM      P+ +TWN M++GY Q G  + ALD F
Sbjct: 419 DVYSWNSIIGGYFQAGFCGKAHELFMKMQESDSPPNIITWNIMITGYMQSGAEDQALDLF 478

Query: 288 KRM-----PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           K +      ++N  SWNS+I+G   +   + A+++F  MQ     P+  T  SIL + + 
Sbjct: 479 KSIEKDGKTKRNAASWNSLISGFVQSGQKDKALQIFRNMQFCHILPNSVTILSILPVCAN 538

Query: 343 IVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +V      +IH   V + ++ ++ ++N LI  YA+ G ++ ++ IF E+   K+ VSWN+
Sbjct: 539 LVASKKVKEIHCFAVRRILVSELSVSNLLIDSYAKSGNLMYSKNIFNELSW-KDAVSWNS 597

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           M+     HG +  AL+LF  MR   + P   TF S+L A  HAG+V+EG+  F  +  +Y
Sbjct: 598 MLSSYVLHGCSESALDLFYQMRKQGLQPNRGTFASILLAYGHAGMVDEGKSVFSCITKDY 657

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
            +   +EH++++V ++GR G+L +A+D I+ MP EP+ +VWGALL ACR+H N  +A +A
Sbjct: 658 LVRQGMEHYSAMVYLLGRSGKLAEALDFIQSMPIEPNSSVWGALLTACRIHRNFGVAVLA 717

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            + +++ EP N+    LL   Y+  G+++   E         + KP G SW++
Sbjct: 718 GKRMLEFEPGNNITRHLLSQAYSLCGKFEPEGE-------KAVNKPIGQSWIE 763



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 122/268 (45%), Gaps = 7/268 (2%)

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPIN 367
           N     A+ +   +  +G +    T+ ++L        + +G ++H  +      +  + 
Sbjct: 61  NGSLSEAVTILDSLAEQGCRVKPITYMNLLQSCIDKDCIFIGKELHSRIGLVENVNPFVE 120

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
             L++MYA+CG +  AR +F EM  ++N+ +W+AMIGGC+ +    E + LF +M    V
Sbjct: 121 TKLVSMYAKCGLLGMARKVFNEMS-VRNLFTWSAMIGGCSRNKSWGEVVGLFYAMMRDGV 179

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
           LP       VL AC     +E GR    SMV   G+        S++ +  + G ++ A 
Sbjct: 180 LPDEFLLPKVLQACGKCRDLETGRL-IHSMVIRRGMRWSKHLRNSIMAVYAKCGEMDCAK 238

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENSTPYVLLYNMYAD 545
            +   M  E D   W A++     +  +  AQ   +A+ K  VEP   T + +L + Y  
Sbjct: 239 KIFDCMD-ERDSVAWNAMISGFCQNGEIGQAQKYFDAMQKDGVEPSLVT-WNILISCYNQ 296

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +G  D A ++   M+   I  P  Y+W 
Sbjct: 297 LGHCDLAIDLMRKMEWFGI-APDVYTWT 323


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 207/639 (32%), Positives = 325/639 (50%), Gaps = 68/639 (10%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC- 60
           IS Y K+ ++  AR+LFD+MPQR VVSWN MIS Y      G   EA +L   M      
Sbjct: 39  ISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSY---SKHGRFSEALFLVYSMHRSHMK 95

Query: 61  ---VTWNTVIS-----------------------------------GYAKTGEMEEALRL 82
               T+++V+S                                    YA   E+ EA R+
Sbjct: 96  LSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRV 155

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGE----L 138
           F+ +  RN V W+ M+ G++    + +A+  F +MP RD  + + L+SG  +NG+     
Sbjct: 156 FDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKA 215

Query: 139 DEAARVLVKCGSRCDGG---EDLVRA---YNTLIVGYGQRGRVEEARKLFD--------K 184
            E  R++++ G         + +VRA      L VG    G + +    +D        +
Sbjct: 216 LEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVE 275

Query: 185 IPVNCDRGEGNVRFKRNIV-----SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
               C+  +  +R  + +V     + NS+I      G +  A  +F  M E +  S+N M
Sbjct: 276 FYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLM 335

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSW 298
           I GY     M+++  LF KMP     + N M+S Y++ G ++ AL+ F+    +K+ V+W
Sbjct: 336 IKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTW 395

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           NSMI+G   +   E A+KL+I M     +  + TFS++    S +  LH G  +H  + K
Sbjct: 396 NSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIK 455

Query: 359 TVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
           T    +V +  +LI MY++CG+I+EA+  F  +    NV +W A+I G A HG  +EA+ 
Sbjct: 456 TPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSI-FSPNVAAWTALINGHAYHGLGSEAIS 514

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           LF  M    + P   TF+ VLSAC+ AGLV EG + F SM   Y + P +EH+A +VD++
Sbjct: 515 LFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLL 574

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
           GR G + +A + IK MP E D  VWGALL AC    ++E+ +  AE +   +P+  + YV
Sbjct: 575 GRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPKPISSYV 634

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           +L N+YA +GRW +   VR +++   +KK  G SW++ +
Sbjct: 635 ILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELN 673



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 207/467 (44%), Gaps = 91/467 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           M+ GYV    M  A  +F +MP+RDVV+W  +ISG+ S  G G   +A  +F +M     
Sbjct: 170 MLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGF-SKNGDG-CGKALEIFRLMMRSGE 227

Query: 56  PERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
              +  T++ V+    + G +    R  + +  +  + ++  I G L        +EF+ 
Sbjct: 228 TTPNEFTFDCVVRACGRLGILSVG-RTVHGLLMKCGLEYDPSIGGAL--------VEFYC 278

Query: 116 RMPGRDSA-------------SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-VRA 161
                D A             +L++L+ GLI  G +++A  V        +G  ++   +
Sbjct: 279 ECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVF-------NGMTEMNPVS 331

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           YN +I GY   G+++++++LF+K+P             R I S N+MI  Y++ G++  A
Sbjct: 332 YNLMIKGYAVGGQMDDSKRLFEKMPC------------RTIFSSNTMISVYSRNGEIDKA 379

Query: 222 REIFEQML-ERDTFSWNTMISGYIHVLDMEEASNLFVKMP-------------------- 260
            E+FE+   E+D  +WN+MISGYIH    EEA  L++ M                     
Sbjct: 380 LELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSC 439

Query: 261 -------------------HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
                                +     +++  Y++ G++  A   F  +   N+ +W ++
Sbjct: 440 LGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTAL 499

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--T 359
           I G   +     AI LF +M  +G  P+  TF  +LS  S    ++ GM+I   + +  +
Sbjct: 500 INGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYS 559

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           V P +     ++ +  R G I EA    ++M L  + V W A++  C
Sbjct: 560 VTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSAC 606



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 130/505 (25%), Positives = 213/505 (42%), Gaps = 84/505 (16%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++ N  IS YAK  +++ A +LF+ MP R VVSWN MIS + ++G  + A+     M  R
Sbjct: 33  ISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMH-R 91

Query: 121 DSASLSALVSGLIQNGELDEAARV-------LVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
               LS      +    L   AR+       L+ C     G E      + L+  Y    
Sbjct: 92  SHMKLSESTFSSV----LSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCF 147

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
            + EAR++FD            V  +RN V W+ M++ Y     +  A  +F +M  RD 
Sbjct: 148 EIGEARRVFD------------VLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDV 195

Query: 234 FSWNTMISGYIHVLD-MEEASNLFVKM-----PHPDTLTWNAMVSGYAQIGNLEL----- 282
            +W T+ISG+    D   +A  +F  M       P+  T++ +V    ++G L +     
Sbjct: 196 VAWTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVH 255

Query: 283 ------------------------------ALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
                                         AL   K +    L + NS+I G  +    E
Sbjct: 256 GLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIE 315

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPI-----N 367
            A  +F  M          T  + +S +  I    +G Q+    +K +   +P      +
Sbjct: 316 DAELVFNGM----------TEMNPVSYNLMIKGYAVGGQMDD--SKRLFEKMPCRTIFSS 363

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           N +I++Y+R G I +A  +FEE K  K+ V+WN+MI G    G   EAL+L+ +M    +
Sbjct: 364 NTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSI 423

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
             T  TF ++  AC+  G + +G Q   + + +   E  +    SL+D+  + G + +A 
Sbjct: 424 QQTQSTFSALFHACSCLGSLHQG-QLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQ 482

Query: 488 DLIKGMPFEPDKAVWGALLGACRVH 512
                + F P+ A W AL+     H
Sbjct: 483 TSFVSI-FSPNVAAWTALINGHAYH 506



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 149/326 (45%), Gaps = 38/326 (11%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           + ++ N  +S YA+   L++A   F +MPQ+ +VSWN+MI+    +  +  A+ L   M 
Sbjct: 31  EIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMH 90

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIV 381
               K    TFSS+LS+ + +  L  G  IH +V K+       + +AL+  YA C  I 
Sbjct: 91  RSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIG 150

Query: 382 EARIIFEEM--------KLL----------------------KNVVSWNAMIGGCASHGF 411
           EAR +F+ +         L+                      ++VV+W  +I G + +G 
Sbjct: 151 EARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGD 210

Query: 412 AT-EALELFK-SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
              +ALE+F+  MRS +  P   TF  V+ AC   G++  GR     ++ + G+E     
Sbjct: 211 GCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRT-VHGLLMKCGLEYDPSI 269

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
             +LV+       ++DA+ + KG+   P      +L+        +E A++    + ++ 
Sbjct: 270 GGALVEFYCECEAIDDALRVCKGV-VNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMN 328

Query: 530 PENSTPYVLLYNMYADVGRWDDANEV 555
           P     Y L+   YA  G+ DD+  +
Sbjct: 329 P---VSYNLMIKGYAVGGQMDDSKRL 351


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 214/640 (33%), Positives = 330/640 (51%), Gaps = 98/640 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-DIMPER- 58
           +I  Y     +  AR+ FD+M  +D V WNVMI+GY+    S   + A  LF D+M    
Sbjct: 51  LIKLYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCGES---DSAIKLFKDMMSSEA 107

Query: 59  --DCVTW-----------------------------------NTVISGYAKTGEMEEALR 81
             D VT+                                   NT+++ Y+K  ++ +A +
Sbjct: 108 KPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARK 167

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           LF+ MP  ++V WN MI G++QNG + +A   F+ M       DS + ++ +  L ++  
Sbjct: 168 LFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSS 227

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           L +   +   +V+ G   D     V   + LI  Y +      A K+F            
Sbjct: 228 LKQIKEIHGYIVRHGVILD-----VYLNSALIDLYFKCRDAVMACKMF------------ 270

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD------TFS------------- 235
           N+  K +IV + +MI  Y   G    A EIF  +L++       TFS             
Sbjct: 271 NLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIK 330

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
               + GYI   ++EE      K P       +A+++ YA+ G L+LA   F R+  K+ 
Sbjct: 331 LGRELHGYIIKNELEE------KCP-----VGSAIMNMYAKCGRLDLAHLIFGRISIKDA 379

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           + WNS+I     +   E AI LF QM +EG K D  T S+ LS  + I  LH G +IH  
Sbjct: 380 ICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGF 439

Query: 356 VTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           + K     D+   +ALI MYA+CG +  AR++F  M+  KN V+WN++I     HG+  +
Sbjct: 440 MIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQE-KNEVAWNSIIAAYGYHGYLAD 498

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           +L LF +M    + P +ITF+++LS+C HAG VE+G ++F+ M  EYGI  ++EH+A + 
Sbjct: 499 SLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMA 558

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D+ GR G L++A ++I  MPF P  +VWG LLGACRVH NVELA+VA+  L+ +EP+NS 
Sbjct: 559 DLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSG 618

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            Y+LL ++ AD G+W   ++++ LMK   ++K  G SW++
Sbjct: 619 YYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPGCSWIE 658



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 227/472 (48%), Gaps = 36/472 (7%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           + D    +++I  YA  G +E+A R F+ M  ++ V WN MI+G++Q G+  +AI+ F  
Sbjct: 42  DLDMFVASSLIKLYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKD 101

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG-----GEDLVRAY-NTLIVGYG 170
           M   ++   S   + ++        +  +V+ G +  G     G D V    NTL+  Y 
Sbjct: 102 MMSSEAKPDSVTFACVLS----ISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYS 157

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
           +  ++ +ARKLFD +P            + ++V WN MI  Y + G +  A  +F +M+ 
Sbjct: 158 KGRQLGDARKLFDMMP------------QIDLVVWNRMIGGYVQNGFMDDASMLFNEMIS 205

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPHP---------DTLTWNAMVSGYAQIGNLE 281
                 +   + ++  L  E +S   +K  H          D    +A++  Y +  +  
Sbjct: 206 AGIKPDSITFTSFLPSL-AESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAV 264

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
           +A   F    + ++V + +MI+G   N   + A+++F  +  +   P+  TFSSIL   +
Sbjct: 265 MACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACA 324

Query: 342 GIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
           G+  + LG ++H  + K  + +  P+ +A++ MYA+CG +  A +IF  +  +K+ + WN
Sbjct: 325 GLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRIS-IKDAICWN 383

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           ++I   +  G   EA+ LF+ M    V    +T  + LSACA+   +  G++    M+  
Sbjct: 384 SIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKG 443

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
              E  +   ++L+++  + G+L  A  L+  +  E ++  W +++ A   H
Sbjct: 444 -AFESDLFDMSALINMYAKCGKLNIA-RLVFNLMQEKNEVAWNSIIAAYGYH 493



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 172/374 (45%), Gaps = 58/374 (15%)

Query: 187 VNCDRGEGNVR-------------FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
           + C  G  NVR             F  ++   +S+I  YA  G +  AR  F++M+++D 
Sbjct: 17  IKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRFFDKMIDKDC 76

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW---------------------- 267
             WN MI+GY+   + + A  LF  M      PD++T+                      
Sbjct: 77  VLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGL 136

Query: 268 -------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
                        N +V+ Y++   L  A   F  MPQ +LV WN MI G   N   + A
Sbjct: 137 VVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDA 196

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITM 373
             LF +M   G KPD  TF+S L   +    L    +IH  + +  VI DV +N+ALI +
Sbjct: 197 SMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDL 256

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           Y +C   V A  +F  +    ++V + AMI G   +G   +ALE+F+ +   K++P  +T
Sbjct: 257 YFKCRDAVMACKMF-NLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALT 315

Query: 434 FISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           F S+L ACA    ++ GR+ H   + NE  +E +    ++++++  + GRL D   LI G
Sbjct: 316 FSSILPACAGLAAIKLGRELHGYIIKNE--LEEKCPVGSAIMNMYAKCGRL-DLAHLIFG 372

Query: 493 MPFEPDKAVWGALL 506
                D   W +++
Sbjct: 373 RISIKDAICWNSII 386



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 8/187 (4%)

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEA 383
           G  PD++TF  ++   +G+ ++ LG  I  M+ +     D+ + ++LI +YA  G I +A
Sbjct: 5   GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDA 64

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
           R  F++M + K+ V WN MI G    G +  A++LFK M S +  P  +TF  VLS    
Sbjct: 65  RRFFDKM-IDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCS 123

Query: 444 AGLVEEGRQHFKSMVNEYGIE--PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
             +VE GRQ    +V   G++  P + +  +LV +  +  +L DA  L   MP + D  V
Sbjct: 124 EAMVEYGRQ-LHGLVVRSGLDFVPLVGN--TLVTVYSKGRQLGDARKLFDMMP-QIDLVV 179

Query: 502 WGALLGA 508
           W  ++G 
Sbjct: 180 WNRMIGG 186


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 194/543 (35%), Positives = 293/543 (53%), Gaps = 36/543 (6%)

Query: 50  YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVAN 109
           YL  +  + D  + N ++  YAK+G  E A+ +F  +P  ++VSWNA+I+G + +     
Sbjct: 213 YLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDL 272

Query: 110 AIEFFDRMPG-RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           A++   +M   R + S+  L S L        AA  LVK G +       +       VG
Sbjct: 273 ALKLLGKMGSYRVAPSMFTLSSALKAC-----AAIGLVKLGRQLHSALMKMDMEPDSFVG 327

Query: 169 ------YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
                 Y + G +++AR +FD +P             ++++ WNS+I  Y+  G  + A 
Sbjct: 328 VGLIDMYSKCGLLQDARMVFDLMP------------XKDVIVWNSIISGYSNCGYDIEAM 375

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP---------DTLTWNAMVSG 273
            +F  M  ++   +N      I        +N F +  H          D    N+++  
Sbjct: 376 SLFTNMY-KEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDS 434

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           Y +   LE A   F+  P ++LV++ SMI         E A+K++++MQ    KPD   F
Sbjct: 435 YGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIF 494

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
           SS+ +  + +     G QIH  V K  ++ DV   N+L+ MYA+CG+I +A  IF E+  
Sbjct: 495 SSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISW 554

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
            + +VSW+AMIGG A HG   +AL+LF  M    +LP +IT +SVLSAC HAGLV E R+
Sbjct: 555 -RGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARR 613

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
            F  M   +GI P  EH+A +VDI+GR GRL++AM L+K MPF+   AVWGALLGA R+H
Sbjct: 614 FFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIH 673

Query: 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
            N+EL + AAE L+ +EPE S  ++LL N+YA  G WD+  +VR  MK++ +KK  G SW
Sbjct: 674 KNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSW 733

Query: 573 VDF 575
           ++ 
Sbjct: 734 IEL 736



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 138/265 (52%), Gaps = 13/265 (4%)

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRM----PQKNLVSWNSMIAGCET 307
           A  L +    PD ++W+A++SGY Q G  E AL  +  M     + N  +++S++ GC  
Sbjct: 101 ARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSL 160

Query: 308 NKDYE-----GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP 362
            ++ E       + L  +M   G  P+  + S++L+  +G+ D + GM++H  + K    
Sbjct: 161 TRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYD 220

Query: 363 DVPIN-NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
             P + NAL+ MYA+ G    A  +F E+    ++VSWNA+I GC  H     AL+L   
Sbjct: 221 SDPFSANALLDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGCVLHEKNDLALKLLGK 279

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M S++V P+  T  S L ACA  GLV+ GRQ   S + +  +EP       L+D+  + G
Sbjct: 280 MGSYRVAPSMFTLSSALKACAAIGLVKLGRQ-LHSALMKMDMEPDSFVGVGLIDMYSKCG 338

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALL 506
            L+DA  +   MP + D  VW +++
Sbjct: 339 LLQDARMVFDLMPXK-DVIVWNSII 362



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 171/377 (45%), Gaps = 51/377 (13%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G L++AR +FD+MP +D + WN++ISGY+  G   EA+ LF +M    +      +S  L
Sbjct: 338 GLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTIL 397

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
           ++                         +G   NG  ++   + +K G + DG        
Sbjct: 398 KS------------------------TAGSQANGFCEQVHTISIKSGYQYDG-----YVA 428

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N+L+  YG+   +E+A K+F+  P              ++V++ SMI  Y++ G    A 
Sbjct: 429 NSLLDSYGKCCLLEDAAKVFEVCPA------------EDLVAYTSMITAYSQYGLGEEAL 476

Query: 223 EIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGY 274
           +++ +M +R    D F ++++ +   ++   E+   + V +       D    N++V+ Y
Sbjct: 477 KMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMY 536

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
           A+ G+++ A   F  +  + +VSW++MI G   +     A++LF QM   G  P+  T  
Sbjct: 537 AKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLV 596

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
           S+LS  +    +    +   ++ K   + P       ++ +  R G + EA ++ +EM  
Sbjct: 597 SVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPF 656

Query: 393 LKNVVSWNAMIGGCASH 409
             +   W A++G    H
Sbjct: 657 QASAAVWGALLGAARIH 673



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 220/495 (44%), Gaps = 51/495 (10%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDV 107
           AR L     E D V+W+ +ISGY + G  EEAL  +  M            S  L+   +
Sbjct: 101 ARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSL 160

Query: 108 ANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGED-----LVRAY 162
              +E   ++         ALV+ +I  G +      L    + C G ED      V  Y
Sbjct: 161 TRNLELGKQI------HRVALVTEMISTG-ISPNEFSLSTVLNACAGLEDENYGMKVHGY 213

Query: 163 -------------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
                        N L+  Y + G  E A  +F +IP            K +IVSWN++I
Sbjct: 214 LIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIP------------KPDIVSWNAVI 261

Query: 210 M-CYAKAGDVVSAREIFEQMLERDTFSWNTMISGY-----IHVLDM-EEASNLFVKMP-H 261
             C     + ++ + + +    R   S  T+ S       I ++ +  +  +  +KM   
Sbjct: 262 AGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDME 321

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE-GAIKLFIQ 320
           PD+     ++  Y++ G L+ A   F  MP K+++ WNS+I+G  +N  Y+  A+ LF  
Sbjct: 322 PDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISG-YSNCGYDIEAMSLFTN 380

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGA 379
           M  EG + ++ T S+IL  ++G        Q+H +  K+    D  + N+L+  Y +C  
Sbjct: 381 MYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCL 440

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           + +A  +FE     +++V++ +MI   + +G   EAL+++  M+   + P    F S+ +
Sbjct: 441 LEDAAKVFEVCP-AEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFN 499

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           ACA+    E+G+Q     V + G+   +    SLV++  + G ++DA  +   + +    
Sbjct: 500 ACANLSAYEQGKQ-IHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWR-GI 557

Query: 500 AVWGALLGACRVHNN 514
             W A++G    H +
Sbjct: 558 VSWSAMIGGLAQHGH 572


>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 611

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 198/599 (33%), Positives = 324/599 (54%), Gaps = 51/599 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------RGSGFLEEARYLFD 53
           +I  Y     +  A++LFD+MPQ +V +W  +   Y+         +  GF++ +    D
Sbjct: 36  LIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIFGFYLRHGMYDKCVQNYGFMKYS----D 91

Query: 54  IMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPA----RNVVSWNAMISGFLQNGDVAN 109
           ++P  D   +  V+    +    E  + +   +       N+   N++I  +++ G+  +
Sbjct: 92  VLP--DNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVCNSLIDMYVKCGNARS 149

Query: 110 AIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
           A   F+ M  RD  S ++++SG + NG  D A  +L  C  R DG E  V  +NTL+  Y
Sbjct: 150 ARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELL-NC-MRLDGFEPDVVTWNTLMDAY 207

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
            Q GR +EA ++  +I             + NI+SW ++I  Y+K G+   +  +F+ M+
Sbjct: 208 CQMGRFDEAWEVLKQIE------------QPNIISWTTLISSYSKIGEHDMSLRVFQDMI 255

Query: 230 ERDTFSWN-----TMISGYIHVLDMEEASNLF---VKMPHPDTLTWN----AMVSGYAQI 277
            R+  S +     +++    H+  +     +     KM   +T+ ++    A+++ YA+ 
Sbjct: 256 IREVVSPDLDCLCSVLVSCRHIGALRSGKEIHGYGTKM-ETNTVFYSSAGAALLTMYAKC 314

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
           G ++ A++ F+ M + ++V+WN+MI G       + AI+ F +MQ    K D+ T S+IL
Sbjct: 315 GRIQDAINVFELMDKSDIVTWNAMILGFVELDLGKQAIECFREMQRMDIKNDQTTISTIL 374

Query: 338 SMSSGIVDLHLGMQIHQMVTKTVIPD--VPINNALITMYARCGAIVEARIIFEEMKLLKN 395
                + DL  G  IH  V K++     V + NA+I MY +CG +  A  IF  M   K+
Sbjct: 375 P----VCDLQYGNPIHAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMPN-KD 429

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           VVSWN MIGG   HG    AL+L K M    + P   TF SVLSAC+H+GLV+EG + F+
Sbjct: 430 VVSWNTMIGGFGMHGHGQAALKLLKEMILSGIFPNSTTFTSVLSACSHSGLVDEGFRLFR 489

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
           SM  +Y I PR+EH++ +VD++ R G+  DA+  I  MP EPDK++WGALL ACR + N+
Sbjct: 490 SMTEDYSITPRMEHYSCIVDMLARAGQFADAVTFIHKMPLEPDKSIWGALLAACRAYQNL 549

Query: 516 ELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +  ++AAE L+++EP+ +  YV L N+YA  GRWDDA  VR  ++   + KP+G S ++
Sbjct: 550 DFGRLAAEQLIRMEPKCAGHYVTLSNIYARAGRWDDAGRVRKEIEGKGLVKPSGQSLIE 608



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 142/310 (45%), Gaps = 14/310 (4%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D      ++  YA   +L  A   F +MPQ N+ +W ++      +  Y+  ++ +  M+
Sbjct: 29  DPFMLTKLIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIFGFYLRHGMYDKCVQNYGFMK 88

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIV 381
                PD + F  +L   + ++    G+ IH+ ++      ++ + N+LI MY +CG   
Sbjct: 89  YSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVCNSLIDMYVKCGNAR 148

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
            AR++FEEM+  +++ SWN+MI G  S+G A  A+EL   MR     P  +T+ +++ A 
Sbjct: 149 SARLVFEEME-ERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLMDAY 207

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF----EP 497
              G  +E  +  K +      +P I  + +L+    + G  + ++ + + M       P
Sbjct: 208 CQMGRFDEAWEVLKQIE-----QPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSP 262

Query: 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN---STPYVLLYNMYADVGRWDDANE 554
           D     ++L +CR    +   +       K+E      S+    L  MYA  GR  DA  
Sbjct: 263 DLDCLCSVLVSCRHIGALRSGKEIHGYGTKMETNTVFYSSAGAALLTMYAKCGRIQDAIN 322

Query: 555 VRLLMKSNNI 564
           V  LM  ++I
Sbjct: 323 VFELMDKSDI 332



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 16/243 (6%)

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLK 394
           +L + S +  LH G QIHQ +T +     P +   LI MYA C  +  A+ +F++M    
Sbjct: 1   MLQLCSNLKSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMP-QP 59

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           NV +W A+ G    HG   + ++ +  M+   VLP    F  VL AC      E G    
Sbjct: 60  NVYAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIH 119

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           K ++   G E  ++   SL+D+  + G    A  + + M  E D   W +++    V N 
Sbjct: 120 KDVI-VCGCESNLQVCNSLIDMYVKCGNARSARLVFEEME-ERDLFSWNSMISG-YVSNG 176

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNM----YADVGRWDDANEVRLLMKSNNIKKPTGY 570
             LA +A E L  +  +   P V+ +N     Y  +GR+D+A EV        I++P   
Sbjct: 177 --LADLAVELLNCMRLDGFEPDVVTWNTLMDAYCQMGRFDEAWEVL-----KQIEQPNII 229

Query: 571 SWV 573
           SW 
Sbjct: 230 SWT 232


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 189/528 (35%), Positives = 279/528 (52%), Gaps = 53/528 (10%)

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           RD    ++++  Y + G   +A  + + MP R VV W+A+I+    +GD   A    +RM
Sbjct: 53  RDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERM 112

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
                                            R DG E  V  +N L+ G  + GR  +
Sbjct: 113 ---------------------------------RSDGVEPNVITWNGLVSGLNRSGRARD 139

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DT 233
           A     ++      GEG   F  +    +  +      GDV    ++   +++     D 
Sbjct: 140 AVLALVRM-----HGEG---FLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDA 191

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK----R 289
                +I  Y      +E   +F +  H D  + NA+V+G ++   +  AL  F+    R
Sbjct: 192 CVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGR 251

Query: 290 MPQKNLVSWNSMIAGCETN-KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
             + N+VSW S++A C  N +D E A+ LF +MQ EG +P+  T   +L   + I  L  
Sbjct: 252 GIELNVVSWTSIVACCVQNGRDLE-AVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMH 310

Query: 349 GMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G   H   + K    D+ + +AL+ MYA+CG + +AR+IFE M   +NVVSWNAMIGG A
Sbjct: 311 GRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPY-RNVVSWNAMIGGYA 369

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
            HG A  A+ LF+SM+S K  P  +TF  VL AC+ AG  EEGR +F  M +++GI PR+
Sbjct: 370 MHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRM 429

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
           EH+A +V ++GR G+L+DA D+I  MPFEPD  +WG+LLG+CRVH NV LA+VAAE L +
Sbjct: 430 EHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQ 489

Query: 528 VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           +EPEN+  YVLL N+YA    WD  N +R +MK+  +KK  G SW++ 
Sbjct: 490 LEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEI 537



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 197/435 (45%), Gaps = 58/435 (13%)

Query: 23  QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRL 82
            RD    + ++  Y+     G   +AR + D MP R  V W+ +I+ +A  G+ E A  L
Sbjct: 52  SRDAFVASSLLHAYLRF---GATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGL 108

Query: 83  FNSMPAR----NVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQ 134
              M +     NV++WN ++SG  ++G   +A+    RM G     D+  +S  +S +  
Sbjct: 109 LERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGD 168

Query: 135 NGEL---DEAARVLVKCGSR---------------CDGGEDLVRAY-----------NTL 165
            G++   ++    +VK G R               C   +++VR +           N L
Sbjct: 169 VGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNAL 228

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           + G  +  +V EA +LF +       G G    + N+VSW S++ C  + G  + A ++F
Sbjct: 229 VAGLSRNAQVSEALRLFREFV-----GRG---IELNVVSWTSIVACCVQNGRDLEAVDLF 280

Query: 226 EQM----LERDTFSWNTMISGYIHVLDMEEASNLFV----KMPHPDTLTWNAMVSGYAQI 277
            +M    +E ++ +   ++  + ++  +    +       K  H D    +A+V  YA+ 
Sbjct: 281 REMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKC 340

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
           G +  A   F+ MP +N+VSWN+MI G   + + E A++LF  MQ   EKPD  TF+ +L
Sbjct: 341 GRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVL 400

Query: 338 SMSSGIVDLHLGMQ-IHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
              S       G    ++M  K  I P +     ++T+  R G + +A  I  +M    +
Sbjct: 401 GACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPD 460

Query: 396 VVSWNAMIGGCASHG 410
              W +++G C  HG
Sbjct: 461 GCIWGSLLGSCRVHG 475



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 151/330 (45%), Gaps = 43/330 (13%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
           + RD F  ++++  Y+      +A ++   MPH   + W+A+++ +A  G+ E A    +
Sbjct: 51  VSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLE 110

Query: 289 RMP----QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
           RM     + N+++WN +++G   +     A+   ++M  EG  PD    S  LS    + 
Sbjct: 111 RMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVG 170

Query: 345 DLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEE-------------- 389
           D+ +G Q+H  V K     D  +  ALI MY +CG   E   +F+E              
Sbjct: 171 DVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVA 230

Query: 390 -----------MKLLK---------NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
                      ++L +         NVVSW +++  C  +G   EA++LF+ M+S  + P
Sbjct: 231 GLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEP 290

Query: 430 TYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
             +T   VL A A+   +  GR  H  S+    G    I   ++LVD+  + GR+ DA  
Sbjct: 291 NSVTIPCVLPAFANIAALMHGRSAHCFSL--RKGFHHDIYVGSALVDMYAKCGRVRDARM 348

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELA 518
           + + MP+  +   W A++G   +H   E A
Sbjct: 349 IFEAMPYR-NVVSWNAMIGGYAMHGEAENA 377



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 12/127 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++  Y K   +  AR +F+ MP R+VVSWN MI GY      G  E A  LF  M     
Sbjct: 333 LVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAM---HGEAENAVRLFRSMQSSKE 389

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
             D VT+  V+   ++ G  EE    FN M  ++ +S     +  M++   + G + +A 
Sbjct: 390 KPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAY 449

Query: 112 EFFDRMP 118
           +  ++MP
Sbjct: 450 DIINQMP 456


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 195/621 (31%), Positives = 315/621 (50%), Gaps = 71/621 (11%)

Query: 6   VKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM---------- 55
           VK   +  AR++FD+M Q+D +SW  +ISGY+++  S    EA  LF  M          
Sbjct: 60  VKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSS---EALLLFKNMRVESGLRIDP 116

Query: 56  -----PERDC-----VTWNTVISGYA--------------------KTGEMEEALRLFNS 85
                  + C     V +  ++ GYA                    K G++ E  R+F+ 
Sbjct: 117 FILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHE 176

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDEA 141
           MP RNVVSW A+I+G ++ G    A+ +F  M       DS + +  +     +G L+  
Sbjct: 177 MPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYG 236

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +  +   +       V   NTL   Y + G++E    LF+K+ +            R+
Sbjct: 237 REIHAQAMKKGFDVSSFVA--NTLATMYNKCGKLEYGLTLFEKMSM------------RD 282

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEEASNLFV 257
           +VSW ++I    + G    A + F +M E D     +++  +ISG  ++  +E    L  
Sbjct: 283 VVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHA 342

Query: 258 KMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
            + H          N++++ YA+ G L  +   F  M ++++VSW+++IAG         
Sbjct: 343 LILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSE 402

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALIT 372
           A +L   M++EG KP     +S+LS    +  L  G Q+H  V    +     + +ALI 
Sbjct: 403 AFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALIN 462

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY +CG+I EA  IF+  +   ++VSW AMI G A HG++ E ++LF+ +    + P  +
Sbjct: 463 MYCKCGSIEEASRIFDAAE-NDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSV 521

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TFI VLSAC+HAGLV+ G ++F +M  +Y I P  EH+  ++D++ R GRL DA  +I+ 
Sbjct: 522 TFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEA 581

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
           MPF  D  VW  LL ACRVH +VE  +  AE ++++EP  +  ++ L N+YA  G+W +A
Sbjct: 582 MPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREA 641

Query: 553 NEVRLLMKSNNIKKPTGYSWV 573
            ++R LMKS  + K  G+SW+
Sbjct: 642 ADIRKLMKSKGVIKEPGWSWI 662



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 223/488 (45%), Gaps = 63/488 (12%)

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
           + + D    N  +    KTG +  A R+F+ M  ++ +SW  +ISG++   D + A+  F
Sbjct: 44  ISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLF 103

Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCD-GGEDLVRAY-------NTLI 166
             M       +   +  L               CG   D    +L+  Y       N++ 
Sbjct: 104 KNMRVESGLRIDPFILSLAHKA-----------CGLNSDVNYGELLHGYAVKTGLVNSVF 152

Query: 167 VG------YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG---- 216
           VG      Y + G++ E R++F ++P+            RN+VSW ++I    +AG    
Sbjct: 153 VGSALLDMYTKNGKIFEGRRVFHEMPM------------RNVVSWTAIITGLVRAGYNKE 200

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGY-----------IHVLDMEEASNLFVKMPHPDTL 265
            +V   E++   +E D++++   +              IH   M++  ++        + 
Sbjct: 201 ALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDV-------SSF 253

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
             N + + Y + G LE  L  F++M  +++VSW ++I         E A++ FI+M+   
Sbjct: 254 VANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESD 313

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEAR 384
             P+ +TF++++S  + +  +  G Q+H ++    +   + + N+++TMYA+CG +  + 
Sbjct: 314 VSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSS 373

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
           +IF EM   +++VSW+ +I G +  G  +EA EL   MR     PT     SVLSAC + 
Sbjct: 374 VIFHEMT-RRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNM 432

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
            ++E G+Q   + V   G+E      ++L+++  + G +E+A  +        D   W A
Sbjct: 433 AILEHGKQ-LHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAE-NDDIVSWTA 490

Query: 505 LLGACRVH 512
           ++     H
Sbjct: 491 MINGYAEH 498


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 199/604 (32%), Positives = 308/604 (50%), Gaps = 55/604 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDV--VSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           M+ GY K   +  A   F  M    V  V +N      +    S           ++   
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 59  DCVTWNT-----VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEF 113
              +WN      V++ YAK  ++ +A  +F+ MP R++V WN MISG+ QNG    A+  
Sbjct: 61  --FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALML 118

Query: 114 FDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGG------EDLVRAYN 163
             RM       DS ++ +++  +        A   L++ G    G       E LV    
Sbjct: 119 VLRMSEEGHRPDSITIVSILPAV--------ADTRLLRIGMAVHGYVLRAGFESLVNVST 170

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
            L+  Y + G V  AR +FD +              R +VSWNSMI  Y ++GD   A  
Sbjct: 171 ALVDMYSKCGSVSIARVIFDGMD------------HRTVVSWNSMIDGYVQSGDAEGAML 218

Query: 224 IFEQMLERDTFSWNTMISGYIHVL----DMEEASNLFVKMPH----PDTLTWNAMVSGYA 275
           IF++ML+      N  + G +H      D+E    +   +       D    N+++S Y+
Sbjct: 219 IFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYS 278

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           +   +++A D FK +  K LVSWN+MI G   N     A+  F +MQ    KPD  T  S
Sbjct: 279 KCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVS 338

Query: 336 ILSMSSGIVDLHLGMQ---IHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMK 391
           ++     + +L +  Q   IH +V +  +  +V +  AL+ MYA+CGAI  AR +F+ M 
Sbjct: 339 VIP---ALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMN 395

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             ++V++WNAMI G  +HG    ++ELFK M+   + P  ITF+  LSAC+H+GLVEEG 
Sbjct: 396 A-RHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGL 454

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
             F+SM  +YGIEP ++H+ ++VD++GR GRL  A D I+ MP +P   V+GA+LGAC++
Sbjct: 455 CFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKI 514

Query: 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           H NV+L + AA  + K+ P++   +VLL N+YA    W    +VR +M+ + ++K  G S
Sbjct: 515 HKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCS 574

Query: 572 WVDF 575
            V+ 
Sbjct: 575 LVEI 578


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 177/517 (34%), Positives = 274/517 (52%), Gaps = 50/517 (9%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +I  Y K G+  +A ++F+ M  RN+ SWN M+SG++++G +  A   FD MP RD  
Sbjct: 86  NHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERD-- 143

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
                                              V ++NT+++GY Q G + EA   + 
Sbjct: 144 -----------------------------------VVSWNTMVIGYAQDGNLHEALWFYK 168

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS----WNTM 239
           +      R  G    K N  S+  ++    K+  +   R+   Q+L     S      ++
Sbjct: 169 EF-----RRSG---IKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSI 220

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           I  Y     ME A   F +M   D   W  ++SGYA++G++E A   F  MP+KN VSW 
Sbjct: 221 IDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWT 280

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTK 358
           ++IAG         A+ LF +M   G KP++ TFSS L  S+ I  L  G +IH  M+  
Sbjct: 281 ALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRT 340

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
            V P+  + ++LI MY++ G++  +  +F       + V WN MI   A HG   +AL +
Sbjct: 341 NVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRM 400

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
              M  F+V P   T + +L+AC+H+GLVEEG + F+SM  ++GI P  EH+A L+D++G
Sbjct: 401 LDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLG 460

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           R G  ++ M  I+ MPFEPDK +W A+LG CR+H N EL + AA+ L+K++PE+S PY+L
Sbjct: 461 RAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYIL 520

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           L ++YAD G+W+   ++R +MK   + K    SW++ 
Sbjct: 521 LSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEI 557



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 203/453 (44%), Gaps = 88/453 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y+K  +   A K+FD+M  R++ SWN M+SGY+    SG L  AR +FD MPERD 
Sbjct: 88  LIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVK---SGMLVRARVVFDSMPERDV 144

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM-ISGFLQNGDVANAIEFFDRMPG 119
           V+WNT++ GYA+ G + EAL  +     R+ + +N    +G L     +  ++   +  G
Sbjct: 145 VSWNTMVIGYAQDGNLHEALWFYKEF-RRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHG 203

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           +       LV+G + N        V++ C               ++I  Y + G++E A+
Sbjct: 204 Q------VLVAGFLSN--------VVLSC---------------SIIDAYAKCGQMESAK 234

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           + FD++ V            ++I  W ++I  YAK GD+ +A ++F +M E++  SW  +
Sbjct: 235 RCFDEMTV------------KDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTAL 282

Query: 240 ISGYIHVLDMEEASNLFVKM---------------------------------------P 260
           I+GY+       A +LF KM                                        
Sbjct: 283 IAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNV 342

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFI 319
            P+ +  ++++  Y++ G+LE +   F+    K + V WN+MI+    +     A+++  
Sbjct: 343 RPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLD 402

Query: 320 QMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARC 377
            M     +P+R T   IL+    SG+V+  L       V   ++PD      LI +  R 
Sbjct: 403 DMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRA 462

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           G   E     EEM    +   WNA++G C  HG
Sbjct: 463 GCFKELMRKIEEMPFEPDKHIWNAILGVCRIHG 495



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 125/314 (39%), Gaps = 45/314 (14%)

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
            S ++   T  +   A+     +  +G +      +S+L        L  G  IH+ +  
Sbjct: 15  QSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKI 74

Query: 359 TVI--PDVPINNALITMYARCGAIVEARIIFEEMKLL----------------------- 393
           T    P+  ++N LI MY +CG  ++A  +F++M L                        
Sbjct: 75  TGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARV 134

Query: 394 -------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
                  ++VVSWN M+ G A  G   EAL  +K  R   +     +F  +L+AC  +  
Sbjct: 135 VFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQ 194

Query: 447 VEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           ++  RQ H + +V   G    +    S++D   + G++E A      M  + D  +W  L
Sbjct: 195 LQLNRQAHGQVLVA--GFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVK-DIHIWTTL 251

Query: 506 LGACRVHNNVELAQVAAEALMKVEPE-NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           +       ++E    AAE L    PE N   +  L   Y   G  + A ++   M +  +
Sbjct: 252 ISGYAKLGDME----AAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGV 307

Query: 565 KKPTGYSWVDFSPC 578
            KP  ++   FS C
Sbjct: 308 -KPEQFT---FSSC 317


>gi|302785946|ref|XP_002974744.1| hypothetical protein SELMODRAFT_31715 [Selaginella moellendorffii]
 gi|300157639|gb|EFJ24264.1| hypothetical protein SELMODRAFT_31715 [Selaginella moellendorffii]
          Length = 492

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 173/522 (33%), Positives = 281/522 (53%), Gaps = 56/522 (10%)

Query: 13  KARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAK 72
           +A+  F+ MP+R+  +WN +I   ++   +G LEEAR +FD +PE+  VTWNT+IS YA+
Sbjct: 5   EAKLAFERMPERNPYTWNFLI---VACSRNGHLEEARMVFDKLPEKSAVTWNTMISCYAQ 61

Query: 73  TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGL 132
              + EA  LF+S+P ++V S N +++ + Q+G++A A E FD +P  +  S+       
Sbjct: 62  KQCVSEAKCLFDSLPVKDVFSRNILLTAYAQSGNLAEAKEMFDSIPSEELTSI------- 114

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
                                        +N ++  Y Q  ++ EA+ +FD++       
Sbjct: 115 ----------------------------CWNNILTAYSQNRQLPEAKSVFDRMT------ 140

Query: 193 EGNVRFKRNIVSWNSMIMC----YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                 +R + SWN+MI      YA+ G    A+ +F++M++ D  SW TM++ Y++   
Sbjct: 141 ------ERTVESWNAMITAMVNAYAQEGRTRQAKLVFDEMVDHDVVSWTTMLAAYLNNGH 194

Query: 249 MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
              A NLF  MP  D L W+ MV  YA  GN+ELA    + MP K+  SW ++I+G    
Sbjct: 195 FTSAENLFALMPARDYLAWSTMVLAYAVKGNIELATKLHEEMPVKDATSWTALISGHARA 254

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPIN 367
              + A+  F  M +EG +PDR T  S L   +    L  G  I +    + +  D  + 
Sbjct: 255 GHSKQALAYFKLMDLEGIEPDRITLMSALEACASSTALAEGKTIFEGAAGRGLDRDTFVG 314

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
            AL++M+ +CG + +AR +F+ + L  NVVSW  +I   A  G  + A E+F  M     
Sbjct: 315 TALVSMFGKCGRLDQARALFDNLPL-PNVVSWTNIIVAYAQSGERSLAAEMFNCMDLQGE 373

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
            P ++TF +VL+AC+H GL+E+ R +F  M+ +  I+P +EH+  LVD++GR G+L+   
Sbjct: 374 QPNWLTFSTVLAACSHGGLLEDARCYFLRMIGDNSIDPVVEHYRCLVDLLGRSGQLDRME 433

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           DL+  MPFE D+  W A+LGAC +H + E     A+ L++++
Sbjct: 434 DLVNEMPFEGDEVSWTAVLGACSLHGDTERGGRIAKQLLEMD 475



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 209/426 (49%), Gaps = 37/426 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ER 58
           MIS Y +++ +++A+ LFD +P +DV S N++++ Y     SG L EA+ +FD +P  E 
Sbjct: 55  MISCYAQKQCVSEAKCLFDSLPVKDVFSRNILLTAYAQ---SGNLAEAKEMFDSIPSEEL 111

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMIS----GFLQNGDVANAIEFF 114
             + WN +++ Y++  ++ EA  +F+ M  R V SWNAMI+     + Q G    A   F
Sbjct: 112 TSICWNNILTAYSQNRQLPEAKSVFDRMTERTVESWNAMITAMVNAYAQEGRTRQAKLVF 171

Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
           D M   D  S + +++  + NG    A  +     +R     D + A++T+++ Y  +G 
Sbjct: 172 DEMVDHDVVSWTTMLAAYLNNGHFTSAENLFALMPAR-----DYL-AWSTMVLAYAVKGN 225

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LE 230
           +E A KL +++PV            ++  SW ++I  +A+AG    A   F+ M    +E
Sbjct: 226 IELATKLHEEMPV------------KDATSWTALISGHARAGHSKQALAYFKLMDLEGIE 273

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDF 286
            D  +  + +        + E   +F          DT    A+VS + + G L+ A   
Sbjct: 274 PDRITLMSALEACASSTALAEGKTIFEGAAGRGLDRDTFVGTALVSMFGKCGRLDQARAL 333

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIV 344
           F  +P  N+VSW ++I     + +   A ++F  M ++GE+P+  TFS++L+  S  G++
Sbjct: 334 FDNLPLPNVVSWTNIIVAYAQSGERSLAAEMFNCMDLQGEQPNWLTFSTVLAACSHGGLL 393

Query: 345 DLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           +      +  +   ++ P V     L+ +  R G +     +  EM    + VSW A++G
Sbjct: 394 EDARCYFLRMIGDNSIDPVVEHYRCLVDLLGRSGQLDRMEDLVNEMPFEGDEVSWTAVLG 453

Query: 405 GCASHG 410
            C+ HG
Sbjct: 454 ACSLHG 459



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 164/335 (48%), Gaps = 31/335 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++ Y +     +A+ +FDEM   DVVSW  M++ Y++   +G    A  LF +MP RD 
Sbjct: 154 MVNAYAQEGRTRQAKLVFDEMVDHDVVSWTTMLAAYLN---NGHFTSAENLFALMPARDY 210

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           + W+T++  YA  G +E A +L   MP ++  SW A+ISG  + G    A+ +F  M   
Sbjct: 211 LAWSTMVLAYAVKGNIELATKLHEEMPVKDATSWTALISGHARAGHSKQALAYFKLMDLE 270

Query: 121 ----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               D  +L + +     +  L E   +      R    +  V     L+  +G+ GR++
Sbjct: 271 GIEPDRITLMSALEACASSTALAEGKTIFEGAAGRGLDRDTFVG--TALVSMFGKCGRLD 328

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LERDTFS 235
           +AR LFD +P+             N+VSW ++I+ YA++G+   A E+F  M L+ +  +
Sbjct: 329 QARALFDNLPLP------------NVVSWTNIIVAYAQSGERSLAAEMFNCMDLQGEQPN 376

Query: 236 W---NTMISGYIHVLDMEEASNLFVKMPHPDTLT-----WNAMVSGYAQIGNLELALDFF 287
           W   +T+++   H   +E+A   F++M   +++      +  +V    + G L+   D  
Sbjct: 377 WLTFSTVLAACSHGGLLEDARCYFLRMIGDNSIDPVVEHYRCLVDLLGRSGQLDRMEDLV 436

Query: 288 KRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
             MP + + VSW +++  C  + D E   ++  Q+
Sbjct: 437 NEMPFEGDEVSWTAVLGACSLHGDTERGGRIAKQL 471


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 195/621 (31%), Positives = 314/621 (50%), Gaps = 71/621 (11%)

Query: 6   VKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM---------- 55
           VK   +  AR++FD+M Q+D +SW  +ISGY+++  S    EA  LF  M          
Sbjct: 60  VKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSS---EALLLFKNMRVESGLRIDP 116

Query: 56  -----PERDC-----VTWNTVISGYA--------------------KTGEMEEALRLFNS 85
                  + C     V +  ++ GYA                    K G++ E  R+F+ 
Sbjct: 117 FILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHE 176

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDEA 141
           MP RNVVSW A+I+G ++ G    A+ +F  M       DS + +  +     +G L+  
Sbjct: 177 MPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYG 236

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +  +   +       V   NTL   Y + G++E    LF+K+ +            R+
Sbjct: 237 REIHAQAMKKGFDVSSFVA--NTLATMYNKCGKLEYGLTLFEKMSM------------RD 282

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEEASNLFV 257
           +VSW ++I    + G    A + F +M E D     +++  +ISG  ++  +E    L  
Sbjct: 283 VVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHA 342

Query: 258 KMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
            + H          N++++ YA+ G L  +   F  M ++++VSW+++IAG         
Sbjct: 343 LILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSE 402

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALIT 372
           A +L   M++EG KP     +S+LS    +  L  G Q+H  V    +     + +ALI 
Sbjct: 403 AFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALIN 462

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY +CG+I EA  IF+  +   ++VSW AMI G A HG++ E ++LF+ +    + P  +
Sbjct: 463 MYCKCGSIEEASRIFDAAE-NDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSV 521

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TFI VLSAC+HAGLV+ G  +F +M  +Y I P  EH+  ++D++ R GRL DA  +I+ 
Sbjct: 522 TFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEA 581

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
           MPF  D  VW  LL ACRVH +VE  +  AE ++++EP  +  ++ L N+YA  G+W +A
Sbjct: 582 MPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREA 641

Query: 553 NEVRLLMKSNNIKKPTGYSWV 573
            ++R LMKS  + K  G+SW+
Sbjct: 642 ADIRKLMKSKGVIKEPGWSWI 662



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 222/488 (45%), Gaps = 63/488 (12%)

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
           + + D    N  +    KTG +  A R+F+ M  ++ +SW  +ISG++   D + A+  F
Sbjct: 44  ISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLF 103

Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCD-GGEDLVRAY-------NTLI 166
             M       +   +  L               CG   D    +L+  Y       N++ 
Sbjct: 104 KNMRVESGLRIDPFILSLAHKA-----------CGLNSDVNYGELLHGYAVKTGLVNSVF 152

Query: 167 VG------YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG---- 216
           VG      Y + G++ E R++F ++P+            RN+VSW ++I    +AG    
Sbjct: 153 VGSALLDMYTKNGKIFEGRRVFHEMPM------------RNVVSWTAIITGLVRAGYNKE 200

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGY-----------IHVLDMEEASNLFVKMPHPDTL 265
            +V   E++   +E D++++   +              IH   M++  ++        + 
Sbjct: 201 ALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDV-------SSF 253

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
             N + + Y + G LE  L  F++M  +++VSW ++I         E A++ FI+M+   
Sbjct: 254 VANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESD 313

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEAR 384
             P+ +TF++++S  + +  +  G Q+H ++    +   + + N+++TMYA+CG +  + 
Sbjct: 314 VSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSS 373

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
           +IF EM   +++VSW+ +I G    G  +EA EL   MR     PT     SVLSAC + 
Sbjct: 374 VIFHEMT-RRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNM 432

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
            ++E G+Q   + V   G+E      ++L+++  + G +E+A  +        D   W A
Sbjct: 433 AILEHGKQ-LHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAE-NDDIVSWTA 490

Query: 505 LLGACRVH 512
           ++     H
Sbjct: 491 MINGYAEH 498


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 188/522 (36%), Positives = 292/522 (55%), Gaps = 30/522 (5%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RD 121
           +IS  +   +   A+R+FN +   NV   N++I    QN     A   F  M       D
Sbjct: 57  LISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFAD 116

Query: 122 SASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGR--VE 176
           + +   L+        L     +   + K G   D     +   N LI  Y + G   V 
Sbjct: 117 NFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSD-----IYVPNALIDCYSRCGGLGVR 171

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           +A KLF+K+             +R+ VSWNSM+    KAG++  AR +F++M +RD  SW
Sbjct: 172 DAMKLFEKMS------------ERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISW 219

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP--QKN 294
           NTM+ GY    +M +A  LF KMP  +T++W+ MV GY++ G++E+A   F +MP   KN
Sbjct: 220 NTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKN 279

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           +V+W  +IAG       + A +L  QM   G K D     SIL+  +    L LGM+IH 
Sbjct: 280 VVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHS 339

Query: 355 MVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
           ++ ++ +  +  + NAL+ MYA+CG + +A  +F ++   K++VSWN M+ G   HG   
Sbjct: 340 ILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPK-KDLVSWNTMLHGLGVHGHGK 398

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           EA+ELF  MR   + P  +TFI+VL +C HAGL++EG  +F SM   Y + P++EH+  L
Sbjct: 399 EAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCL 458

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           VD++GR GRL++A+ +++ MP EP+  +WGALLGACR+HN V++A+   + L+K++P + 
Sbjct: 459 VDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDP 518

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
             Y LL N+YA    W+   ++R  MKS  ++KP+G S V+ 
Sbjct: 519 GNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVEL 560



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 211/447 (47%), Gaps = 54/447 (12%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+   N +I  Y    G G + +A  LF+ M ERD V+WN+++ G  K GE+ +A RLF+
Sbjct: 151 DIYVPNALIDCYSRCGGLG-VRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFD 209

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            MP R+++SWN M+ G+ +  +++ A E F++MP R++ S S +V G  + G++ E ARV
Sbjct: 210 EMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDM-EMARV 268

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
           +     +       V  +  +I GY ++G ++EA +L D++  +          K +  +
Sbjct: 269 MF---DKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS--------GLKFDAAA 317

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLER-----DTFSWNTMISGYIHVLDMEEASNLFVKM 259
             S++    ++G ++S       +L+R     + +  N ++  Y    ++++A ++F  +
Sbjct: 318 VISILAACTESG-LLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDI 376

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
           P  D ++WN M+ G    G+ + A++ F RM +                           
Sbjct: 377 PKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRR--------------------------- 409

Query: 320 QMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARC 377
               EG +PD+ TF ++L     +G++D  +           ++P V     L+ +  R 
Sbjct: 410 ----EGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRV 465

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G + EA  + + M +  NVV W A++G C  H     A E+  ++   K+ P      S+
Sbjct: 466 GRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNL--VKLDPCDPGNYSL 523

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIE 464
           LS    A    EG    +S +   G+E
Sbjct: 524 LSNIYAAAEDWEGVADIRSKMKSMGVE 550



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 175/332 (52%), Gaps = 37/332 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+ G VK  E+  AR+LFDEMPQRD++SWN M+ GY   R    + +A  LF+ MPER+ 
Sbjct: 191 MLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCRE---MSKAFELFEKMPERNT 247

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM--PARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           V+W+T++ GY+K G+ME A  +F+ M  PA+NVV+W  +I+G+ + G +  A    D+M 
Sbjct: 248 VSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMV 307

Query: 119 GR----DSASLSALVSGLIQNGELDEAARV--LVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
                 D+A++ ++++   ++G L    R+  ++K   R + G +     N L+  Y + 
Sbjct: 308 ASGLKFDAAAVISILAACTESGLLSLGMRIHSILK---RSNLGSN-AYVLNALLDMYAKC 363

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM---- 228
           G +++A  +F+ IP            K+++VSWN+M+      G    A E+F +M    
Sbjct: 364 GNLKKAFDVFNDIP------------KKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREG 411

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELA 283
           +  D  ++  ++    H   ++E  + F  M       P    +  +V    ++G L+ A
Sbjct: 412 IRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEA 471

Query: 284 LDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
           +   + MP + N+V W +++  C  + + + A
Sbjct: 472 IKVVQTMPMEPNVVIWGALLGACRMHNEVDIA 503



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 151/286 (52%), Gaps = 25/286 (8%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           A KLF++M +RD VSWN M+ G +    +G L +AR LFD MP+RD ++WNT++ GYA+ 
Sbjct: 173 AMKLFEKMSERDTVSWNSMLGGLVK---AGELRDARRLFDEMPQRDLISWNTMLDGYARC 229

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRDSASLSALVSG 131
            EM +A  LF  MP RN VSW+ M+ G+ + GD+  A   FD+M  P ++  + + +++G
Sbjct: 230 REMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAG 289

Query: 132 LIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
             + G L EA R+   +V  G + D       A  +++    + G +    ++   +  +
Sbjct: 290 YAEKGLLKEADRLVDQMVASGLKFDAA-----AVISILAACTESGLLSLGMRIHSILKRS 344

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                       N    N+++  YAK G++  A ++F  + ++D  SWNTM+ G      
Sbjct: 345 --------NLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGH 396

Query: 249 MEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRM 290
            +EA  LF +M      PD +T+ A++      G ++  +D+F  M
Sbjct: 397 GKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSM 442



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 162/396 (40%), Gaps = 56/396 (14%)

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
           +A   VS+R IFE+ L+      N      +H       + +  +  H D      ++S 
Sbjct: 8   RAPSWVSSRRIFEERLQDLPKCANLNQVKQLH-------AQIIRRNLHEDLHIAPKLISA 60

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
            +      LA+  F ++ + N+   NS+I     N     A  +F +MQ  G   D  T+
Sbjct: 61  LSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTY 120

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCG--AIVEARIIFEEM 390
             +L   SG   L +   +H  + K  +  D+ + NALI  Y+RCG   + +A  +FE+M
Sbjct: 121 PFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKM 180

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELF-------------------------KSMRSF 425
              ++ VSWN+M+GG    G   +A  LF                         K+   F
Sbjct: 181 S-ERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELF 239

Query: 426 KVLP--TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
           + +P    +++ +++   + AG +E  R  F  M         +  +  ++      G L
Sbjct: 240 EKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLP---AKNVVTWTIIIAGYAEKGLL 296

Query: 484 EDAMDLI-----KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           ++A  L+      G+ F  D A   ++L AC     + L  +   +++K     S  YVL
Sbjct: 297 KEADRLVDQMVASGLKF--DAAAVISILAACTESGLLSLG-MRIHSILKRSNLGSNAYVL 353

Query: 539 --LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
             L +MYA  G    A +V      N+I K    SW
Sbjct: 354 NALLDMYAKCGNLKKAFDV-----FNDIPKKDLVSW 384


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 197/627 (31%), Positives = 332/627 (52%), Gaps = 76/627 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           ++  Y+    +   RK+F+ M +R+VV+W  +++GYI +                     
Sbjct: 97  LVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPN 156

Query: 40  -----------RGSGFLEEARYLFDIMPERDCVT----WNTVISGYAKTGEMEEALRLFN 84
                         G ++  +++     +  C +     N++++ YAK G +EEA  +F 
Sbjct: 157 PFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFC 216

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDR-------MPGRDSASLSALVSGLIQNGE 137
            M  R++VSWN +++G + NG    A++ F         +     +++  L + L   G 
Sbjct: 217 RMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGL 276

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
             +    ++K G    G          L+  Y + G++++A  +F  +  +         
Sbjct: 277 ARQLHSSVLKHGFHSYG-----NVMTALMDAYNKAGQLDKALDVFLLMSGS--------- 322

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
             +N+VSW +MI    + GD+  A  +F +M E D  + N +   Y  +L + EAS  F 
Sbjct: 323 --QNVVSWTAMIDGCIQNGDIPLAAALFSRMRE-DGVAPNDLT--YSTILTVSEAS--FP 375

Query: 258 KMPHPDTLTWN---------AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
              H   +  N         A++  Y+++ + E AL  FK + QK++VSW++M+      
Sbjct: 376 PQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQA 435

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSS-ILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPI 366
            D  GA   FI+M + G KP+  T SS I + +S    + LG Q H +  K    D + +
Sbjct: 436 GDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCV 495

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
           ++AL++MYAR G+I  A+ +FE  +  ++++SWN+M+ G A HG++ +AL++F+ M    
Sbjct: 496 SSALVSMYARKGSIENAQCVFER-QTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEG 554

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           +    +TF+SV+  CAHAGLVEEG+Q+F  MV +YGI P ++H+A +VD+  R G+L++ 
Sbjct: 555 IDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDET 614

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
           M LI+GMPF     +W ALLGACRVH NVEL ++AAE L+ +EP +S  YVLL N+Y+  
Sbjct: 615 MSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAA 674

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWV 573
           G+W + +EVR LM +  ++K  G SW+
Sbjct: 675 GKWKEKDEVRKLMDTKKVRKEAGCSWI 701



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 154/312 (49%), Gaps = 11/312 (3%)

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
           H D     ++V  Y    ++      F+ M ++N+V+W S++ G          + LF +
Sbjct: 88  HGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFR 147

Query: 321 MQVEGEKPDRHTFSSILSM--SSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARC 377
           M+ EG  P+  TFSS+LSM  S G+VD  LG  +H Q +       V + N+L+ MYA+C
Sbjct: 148 MRAEGVWPNPFTFSSVLSMVASQGMVD--LGQHVHAQSIKFGCCSTVFVCNSLMNMYAKC 205

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G + EAR++F  M+  +++VSWN ++ G   +G   EAL+LF   RS   + T  T+ +V
Sbjct: 206 GLVEEARVVFCRME-TRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTV 264

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           ++ CA+   +   RQ   S V ++G         +L+D   + G+L+ A+D+   M    
Sbjct: 265 INLCANLKHLGLARQ-LHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQ 323

Query: 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
           +   W A++  C  + ++ L   AA    ++  +   P  L Y+    V       ++  
Sbjct: 324 NVVSWTAMIDGCIQNGDIPL---AAALFSRMREDGVAPNDLTYSTILTVSEASFPPQIHA 380

Query: 558 -LMKSNNIKKPT 568
            ++K+N    PT
Sbjct: 381 QVIKTNYECTPT 392



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 165/368 (44%), Gaps = 54/368 (14%)

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           K    + V C    G++R   ++V        Y     V+  R++FE ML+R+  +W ++
Sbjct: 75  KQLHALCVRCGHDHGDIRVGTSLVDM------YMNWHSVLDGRKVFEGMLKRNVVTWTSL 128

Query: 240 ISGYIHVLDMEEASNLFVKM------PHPDTLT--------------------------- 266
           ++GYI    + +  +LF +M      P+P T +                           
Sbjct: 129 LTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGC 188

Query: 267 ------WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN-KDYEGAIKLFI 319
                  N++++ YA+ G +E A   F RM  +++VSWN+++AG   N +D E A++LF 
Sbjct: 189 CSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLE-ALQLFH 247

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCG 378
             +         T+S+++++ + +  L L  Q+H  V K        +  AL+  Y + G
Sbjct: 248 DSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAG 307

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
            + +A  +F  M   +NVVSW AMI GC  +G    A  LF  MR   V P  +T+ ++L
Sbjct: 308 QLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL 367

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           +  + A    +   H + +   Y   P +    +L+    +    E+A+ + K M  + D
Sbjct: 368 TV-SEASFPPQ--IHAQVIKTNYECTPTVG--TALMVSYSKLCSTEEALSIFK-MIDQKD 421

Query: 499 KAVWGALL 506
              W A+L
Sbjct: 422 VVSWSAML 429



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 104/214 (48%), Gaps = 6/214 (2%)

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIP--DVPINNALITMYARCGAIVEARIIFEEMKLL 393
           I+ +   + D  LG Q+H +  +      D+ +  +L+ MY    ++++ R +FE M L 
Sbjct: 61  IIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGM-LK 119

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           +NVV+W +++ G    G   + + LF  MR+  V P   TF SVLS  A  G+V+ G QH
Sbjct: 120 RNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLG-QH 178

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
             +   ++G    +    SL+++  + G +E+A  +   M    D   W  L+    ++ 
Sbjct: 179 VHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETR-DMVSWNTLMAGLVLNG 237

Query: 514 -NVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
            ++E  Q+  ++   +     + Y  + N+ A++
Sbjct: 238 RDLEALQLFHDSRSSITMLTESTYSTVINLCANL 271


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 207/639 (32%), Positives = 324/639 (50%), Gaps = 68/639 (10%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC- 60
           IS Y K+ ++  AR+LFD+MPQR VVSWN MIS Y      G   EA +L   M      
Sbjct: 79  ISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSY---SKHGRFSEALFLVYSMHRSHMK 135

Query: 61  ---VTWNTVIS-----------------------------------GYAKTGEMEEALRL 82
               T+++V+S                                    YA   E+ EA R+
Sbjct: 136 LSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRV 195

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGE----L 138
           F+ +  RN V W+ M+ G++    + +A+  F +MP RD  + + L+SG  +NG+     
Sbjct: 196 FDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKA 255

Query: 139 DEAARVLVKCGSRCDGG---EDLVRA---YNTLIVGYGQRGRVEEARKLFD--------K 184
            E  R++++ G         + +VRA      L VG    G + +    +D        +
Sbjct: 256 LEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVE 315

Query: 185 IPVNCDRGEGNVRFKRNIV-----SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
               C+  +  +R  + +V     + NS+I      G +  A  +F  M E +  S+N M
Sbjct: 316 FYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLM 375

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSW 298
           I GY     M+++  LF KMP     + N M+S Y++ G ++ AL+ F+    +K+ V+W
Sbjct: 376 IKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTW 435

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           NSMI+G   +   E A+KL+I M     +  R TFS++    S +  L  G  +H  + K
Sbjct: 436 NSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQGQLLHAHLIK 495

Query: 359 TVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
           T    +V +  +LI MY++CG+I+EA+  F  +    NV +W A+I G A HG  +EA+ 
Sbjct: 496 TPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSI-FSPNVAAWTALINGHAYHGLGSEAIS 554

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           LF  M    + P   TF+ VLSAC+ AGLV EG + F SM   Y + P +EH+A +VD++
Sbjct: 555 LFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLL 614

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
           GR G + +A + IK MP E D  VWGALL AC    ++E+ +  AE +   +P+  + YV
Sbjct: 615 GRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPKPISSYV 674

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           +L N+YA +GRW +   VR +++   +KK  G SW++ +
Sbjct: 675 ILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELN 713



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 206/467 (44%), Gaps = 91/467 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           M+ GYV    M  A  +F +MP+RDVV+W  +ISG+ S  G G   +A  +F +M     
Sbjct: 210 MLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGF-SKNGDG-CGKALEMFRLMMRSGE 267

Query: 56  PERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
              +  T++ V+    + G +    R  + +  +  + ++  I G L        +EF+ 
Sbjct: 268 TTPNEFTFDCVVRACGRLGILSVG-RTVHGLLMKCGLEYDPSIGGAL--------VEFYC 318

Query: 116 RMPGRDSA-------------SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-VRA 161
                D A             +L++L+ GLI  G +++A  V        +G  ++   +
Sbjct: 319 ECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVF-------NGMTEMNPVS 371

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           YN +I GY   G+++++++LF+K+P             R I S N+MI  Y++ G++  A
Sbjct: 372 YNLMIKGYAVGGQMDDSKRLFEKMPC------------RTIFSSNTMISVYSRNGEIDKA 419

Query: 222 REIFEQML-ERDTFSWNTMISGYIHVLDMEEASNLFVKMP-------------------- 260
            E+FE+   E+D  +WN+MISGYIH    EEA  L++ M                     
Sbjct: 420 LELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSC 479

Query: 261 -------------------HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
                                +     +++  Y++ G++  A   F  +   N+ +W ++
Sbjct: 480 LGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTAL 539

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--T 359
           I G   +     AI LF  M  +G  P+  TF  +LS  S    ++ GM+I   + +  +
Sbjct: 540 INGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYS 599

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           V P +     ++ +  R G I EA    ++M L  + V W A++  C
Sbjct: 600 VTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSAC 646



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 130/505 (25%), Positives = 214/505 (42%), Gaps = 84/505 (16%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++ N  IS YAK  +++ A +LF+ MP R VVSWN MIS + ++G  + A+     M  R
Sbjct: 73  ISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMH-R 131

Query: 121 DSASLSALVSGLIQNGELDEAARV-------LVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
               LS      +    L   AR+       L+ C     G E      + L+  Y    
Sbjct: 132 SHMKLSESTFSSV----LSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCF 187

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
            + EAR++FD            V  +RN V W+ M++ Y     +  A  +F +M  RD 
Sbjct: 188 EIGEARRVFD------------VLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDV 235

Query: 234 FSWNTMISGYIHVLD-MEEASNLFVKM-----PHPDTLTWNAMVSGYAQIGNLEL----- 282
            +W T+ISG+    D   +A  +F  M       P+  T++ +V    ++G L +     
Sbjct: 236 VAWTTLISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVH 295

Query: 283 ------------------------------ALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
                                         AL   K +    L + NS+I G  +    E
Sbjct: 296 GLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIE 355

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPI-----N 367
            A  +F  M          T  + +S +  I    +G Q+    +K +   +P      +
Sbjct: 356 DAELVFNGM----------TEMNPVSYNLMIKGYAVGGQMDD--SKRLFEKMPCRTIFSS 403

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           N +I++Y+R G I +A  +FEE K  K+ V+WN+MI G    G   EAL+L+ +M    +
Sbjct: 404 NTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSI 463

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
             T  TF ++  AC+  G +++G Q   + + +   E  +    SL+D+  + G + +A 
Sbjct: 464 QQTRSTFSALFHACSCLGSLQQG-QLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQ 522

Query: 488 DLIKGMPFEPDKAVWGALLGACRVH 512
                + F P+ A W AL+     H
Sbjct: 523 TSFVSI-FSPNVAAWTALINGHAYH 546



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 149/326 (45%), Gaps = 38/326 (11%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           + ++ N  +S YA+   L++A   F +MPQ+ +VSWN+MI+    +  +  A+ L   M 
Sbjct: 71  EIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMH 130

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIV 381
               K    TFSS+LS+ + +  L  G  IH +V K+       + +AL+  YA C  I 
Sbjct: 131 RSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIG 190

Query: 382 EARIIFEEM--------KLL----------------------KNVVSWNAMIGGCASHGF 411
           EAR +F+ +         L+                      ++VV+W  +I G + +G 
Sbjct: 191 EARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGD 250

Query: 412 AT-EALELFK-SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
              +ALE+F+  MRS +  P   TF  V+ AC   G++  GR     ++ + G+E     
Sbjct: 251 GCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRT-VHGLLMKCGLEYDPSI 309

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
             +LV+       ++DA+ + KG+   P      +L+        +E A++    + ++ 
Sbjct: 310 GGALVEFYCECEAIDDALRVCKGV-VNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMN 368

Query: 530 PENSTPYVLLYNMYADVGRWDDANEV 555
           P     Y L+   YA  G+ DD+  +
Sbjct: 369 P---VSYNLMIKGYAVGGQMDDSKRL 391


>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
          Length = 588

 Score =  314 bits (804), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 180/524 (34%), Positives = 282/524 (53%), Gaps = 55/524 (10%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS----WNAMISGFLQNGDVANAIEFF 114
           D  + + V+   ++ G ++E +++   +    + S     N +I  +L+ G +  A + F
Sbjct: 95  DKFSLSLVLKACSRLGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIF 154

Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
           DRMP RDS S                                     YN++I GY + G 
Sbjct: 155 DRMPQRDSVS-------------------------------------YNSMIDGYVKCGL 177

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDT 233
           +  AR+LFD +P          +  +N++SWNSMI  YA+  D V+ A ++F +M E+D 
Sbjct: 178 IGSARELFDLMP----------KEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDL 227

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
            SWN++I GY+    ME+A +LF  MP  D +TW  M+ GYA++G +  A   F +MP +
Sbjct: 228 ISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHR 287

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQI 352
           ++V++NSM+AG   NK    A+++F  M+ E    PD  T   +LS  + +  L   M +
Sbjct: 288 DVVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDM 347

Query: 353 H-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H  +V K       +  ALI MY++CG+I +A ++FE ++  K++  WNAMIGG A HG 
Sbjct: 348 HLYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIEN-KSIDHWNAMIGGLAIHGL 406

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
              A ++   +    + P  ITF+ +L+AC+H+GLV+EG   F+ M  ++ IEPR++H+ 
Sbjct: 407 GESAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYG 466

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            +VDI+ R G +E A +LI+ MP EP+  +W   L AC  H   E  +V A+ L+     
Sbjct: 467 CMVDILSRSGSIELAKNLIEEMPMEPNDVIWRTFLTACSHHKEFETGEVVAKHLILQAGY 526

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           N + YVLL NMYA  G W DA  VR +MK   ++K  G SW++ 
Sbjct: 527 NPSSYVLLSNMYASFGMWKDARRVRTMMKERELQKVPGCSWIEL 570



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 203/399 (50%), Gaps = 35/399 (8%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+   N +I  Y+     GF   AR +FD MP+RD V++N++I GY K G +  A  LF+
Sbjct: 130 DLFLQNCLIGLYLKCGCLGF---ARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFD 186

Query: 85  SMPA--RNVVSWNAMISGFLQNGDVAN-AIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
            MP   +N++SWN+MISG+ Q  D  N A + F  MP +D  S ++L+ G +++G +++A
Sbjct: 187 LMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDA 246

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +      R     D+V  + T+I GY + G V +A+ LFD++P             R+
Sbjct: 247 KDLFYVMPRR-----DVV-TWATMIDGYAKLGFVHKAKTLFDQMP------------HRD 288

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQM-----LERDTFSWNTMISGYIHVLDMEEASNLF 256
           +V++NSM+  Y +    + A EIF  M     L  D  +   ++S    +  + +A ++ 
Sbjct: 289 VVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMH 348

Query: 257 VKMPHPDTLTWN----AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           + +             A++  Y++ G+++ A+  F+R+  K++  WN+MI G   +   E
Sbjct: 349 LYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGE 408

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNAL 370
            A  + ++++    KPD  TF  IL+  S    +  G+   +++ +   + P +     +
Sbjct: 409 SAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 468

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           + + +R G+I  A+ + EEM +  N V W   +  C+ H
Sbjct: 469 VDILSRSGSIELAKNLIEEMPMEPNDVIWRTFLTACSHH 507



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 199/410 (48%), Gaps = 41/410 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQ--RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           MI GYVK   +  AR+LFD MP+  ++++SWN MISGY  ++ S  +  A  LF  MPE+
Sbjct: 168 MIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGY--AQTSDGVNIASKLFAEMPEK 225

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D ++WN++I GY K G ME+A  LF  MP R+VV+W  MI G+ + G V  A   FD+MP
Sbjct: 226 DLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMP 285

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV---GYGQRGRV 175
            RD  + +++++G +QN    EA  +     S  +    L     TL++      Q GR+
Sbjct: 286 HRDVVAYNSMMAGYVQNKYNMEALEIF----SDMEKESHLSPDETTLVIVLSAIAQLGRL 341

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
            +A  +   I        G +          ++I  Y+K G +  A  +FE++  +    
Sbjct: 342 SKAMDMHLYIVEKQFFLGGKLGV--------ALIDMYSKCGSIQQAMLVFERIENKSIDH 393

Query: 236 WNTMISGY-IHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
           WN MI G  IH L  E A ++ +++      PD +T+  +++  +  G ++  L  F+ M
Sbjct: 394 WNAMIGGLAIHGLG-ESAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELM 452

Query: 291 PQKN-----LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            +K+     L  +  M+     +   E A  L  +M +E   P+   + + L+  S    
Sbjct: 453 RRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPME---PNDVIWRTFLTACSH--- 506

Query: 346 LHLGMQIHQMVTKTVIPDVPINNA----LITMYARCGAIVEARIIFEEMK 391
            H   +  ++V K +I     N +    L  MYA  G   +AR +   MK
Sbjct: 507 -HKEFETGEVVAKHLILQAGYNPSSYVLLSNMYASFGMWKDARRVRTMMK 555


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  314 bits (804), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 191/522 (36%), Positives = 293/522 (56%), Gaps = 30/522 (5%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RD 121
           +IS  +   +   ALR+FN +   NV   N++I     N     A   F  M       D
Sbjct: 57  LISALSLCRQTNLALRVFNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFAD 116

Query: 122 SASLSALV---SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR--VE 176
           + +   L+   SGL     +      + K G   D     +   N LI  Y + G   V 
Sbjct: 117 NFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLSSD-----IYVPNALIDCYSRCGGLGVR 171

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           +A KLF+K+             +R+ VSWNSM+    KAG++  AR++F++M +RD  SW
Sbjct: 172 DAMKLFEKMS------------ERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRDLISW 219

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP--QKN 294
           NTM+ GY    +M  A  LF KMP  +T++W+ MV GY++ G++E+A   F +MP   KN
Sbjct: 220 NTMLDGYARCREMSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKN 279

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           +V+W  +IAG       + A KL  QM   G + D     SIL+  +    L LGM+ H 
Sbjct: 280 VVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGMRAHS 339

Query: 355 MVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
           ++ K+ +  +  + NAL+ MYA+CG++ +A  +F +M   K++VSWN M+ G   HG   
Sbjct: 340 IIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPK-KDLVSWNTMLHGLGVHGHGK 398

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           EA+ELF  MR   + P  +TFI+VL +C HAGL++EG  +F SM   Y + P++EH+  L
Sbjct: 399 EAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCL 458

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           VD++GR GRL++A+ +++ MP EP+  +WGALLGACR+HN V++A+   + L+K++P + 
Sbjct: 459 VDLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPSDP 518

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
             Y LL N+YA    W+   ++R  MKS  ++KP+G S V+ 
Sbjct: 519 GNYTLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVEL 560



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 146/286 (51%), Gaps = 25/286 (8%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           A KLF++M +RD VSWN M+ G +    +G L +AR LFD MP+RD ++WNT++ GYA+ 
Sbjct: 173 AMKLFEKMSERDTVSWNSMLGGLVK---AGELRDARKLFDEMPQRDLISWNTMLDGYARC 229

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRDSASLSALVSG 131
            EM  A  LF  MP RN VSW+ M+ G+ + GD+  A   FD+M  P ++  + + +++G
Sbjct: 230 REMSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAG 289

Query: 132 LIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
             + G L EA ++   +V  G R D    +         G    G    A  +  K  +N
Sbjct: 290 YAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGM--RAHSIIKKSNLN 347

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                       N    N+++  YAK G +  A ++F  M ++D  SWNTM+ G      
Sbjct: 348 S-----------NASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGH 396

Query: 249 MEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
            +EA  LF +M      PD +T+ A++      G ++  +D+F  M
Sbjct: 397 GKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFYSM 442



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 189/374 (50%), Gaps = 42/374 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+ G VK  E+  ARKLFDEMPQRD++SWN M+ GY   R    +  A  LF+ MPER+ 
Sbjct: 191 MLGGLVKAGELRDARKLFDEMPQRDLISWNTMLDGYARCRE---MSRAFELFEKMPERNT 247

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM--PARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           V+W+T++ GY+K G+ME A  +F+ M  PA+NVV+W  +I+G+ + G +  A +  D+M 
Sbjct: 248 VSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMV 307

Query: 119 GR----DSASLSALVSGLIQNGELDEAARV--LVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
                 D+A+  ++++   ++G L    R   ++K  +       L    N L+  Y + 
Sbjct: 308 ASGLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNASVL----NALLDMYAKC 363

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER- 231
           G +++A  +F+ +P            K+++VSWN+M+      G    A E+F +M +  
Sbjct: 364 GSLKKAFDVFNDMP------------KKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEG 411

Query: 232 ---DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELA 283
              D  ++  ++    H   ++E  + F  M       P    +  +V    + G L+ A
Sbjct: 412 IWPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEA 471

Query: 284 LDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMSS 341
           +   + MP + N+V W +++  C  + + + A ++   + +++   P  +T  S +  ++
Sbjct: 472 IKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPSDPGNYTLLSNIYAAA 531

Query: 342 ----GIVDLHLGMQ 351
               G+ D+   M+
Sbjct: 532 EDWEGVADIRSKMK 545



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 129/291 (44%), Gaps = 21/291 (7%)

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
           +A   VS+R IFE+ L+      N      +H       + +  +  H D      ++S 
Sbjct: 8   RAPSWVSSRRIFEERLQDLPKCANLNQVKQLH-------AQIIRRNLHQDLHIAPKLISA 60

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
            +      LAL  F ++ + N+   NS+I     N     A  +F +MQ  G   D  T+
Sbjct: 61  LSLCRQTNLALRVFNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTY 120

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCG--AIVEARIIFEEM 390
             +L   SG+  L +   +H  + K  +  D+ + NALI  Y+RCG   + +A  +FE+M
Sbjct: 121 PFLLKACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKM 180

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
              ++ VSWN+M+GG    G   +A +LF  M    +    I++ ++L   A    +   
Sbjct: 181 S-ERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRDL----ISWNTMLDGYARCREMSRA 235

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
            + F+ M     +      ++++V    + G +E A  +   MPF P K V
Sbjct: 236 FELFEKMPERNTVS-----WSTMVMGYSKAGDMEMARVMFDKMPF-PAKNV 280


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 185/520 (35%), Positives = 284/520 (54%), Gaps = 41/520 (7%)

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
           +KT  +  A  +F  +   N    N M+  + ++     A+ F+  M  +          
Sbjct: 55  SKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRKK---------- 104

Query: 131 GLIQNGELDEAARVLVKCGSRCD-------GGEDLVRAY-------NTLIVGYGQRGRVE 176
           GL+  G+      VL  CG+ C         GE + R +       N LI  Y + G   
Sbjct: 105 GLL--GDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETG 162

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            AR +FD               ++++VSWNSM+  Y   G++ +A+ +F++M ERD  SW
Sbjct: 163 WARAVFDGFS------------EKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSW 210

Query: 237 NTMISGYIHVL-DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           + MI GY   + ++  A   F  MP  D ++WN+M+ GYA++G +E+A + F +M QKN+
Sbjct: 211 SIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNV 270

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-Q 354
           +SW+ MI G   ++D + A+ LF QM  +G KPDR +    +S  S +  L  G  IH  
Sbjct: 271 ISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLY 330

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           M    ++ D+ +  AL+ MY +CG+  EAR IF  M   +NVVSWN MI G   +GF  E
Sbjct: 331 MKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPE-RNVVSWNVMIVGLGMNGFGKE 389

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           ALE F  M   ++    + F+ VL AC+HA LV EG   F  M   Y +EP++EH+  LV
Sbjct: 390 ALECFXQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLV 449

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D++GR G+L+   ++I+ MP +P+ A+WG+LL ACR+H NV LA++  E L +++ ++S 
Sbjct: 450 DLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSG 509

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            YVL+ N+YADVG W+    +R LMK   +KK  G S ++
Sbjct: 510 VYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIE 549



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/324 (33%), Positives = 162/324 (50%), Gaps = 30/324 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+ GYV   EM  A+ +FDEMP+RDVVSW++MI GY   +  G +  AR  FD MP RD 
Sbjct: 182 MLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGY--GKKMGEVNRARVFFDSMPTRDL 239

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN++I GYAK GEME A  +FB M  +NV+SW+ MI G+  + D   A+  F +M  +
Sbjct: 240 VSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQ 299

Query: 121 ----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               D  S+   VS   Q G LD+  R +     R     D+V     L+  Y + G  +
Sbjct: 300 GIKPDRVSVVGAVSACSQLGALDQ-GRWIHLYMKRNRMLLDIV-VQTALVDMYLKCGSXD 357

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LER---D 232
           EAR +F+ +P            +RN+VSWN MI+     G    A E F QM +ER   D
Sbjct: 358 EARXIFNSMP------------ERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMD 405

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFF 287
              +  ++    H   + E  ++F +M       P    +  +V    + G L+   +  
Sbjct: 406 DLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNII 465

Query: 288 KRMPQK-NLVSWNSMIAGCETNKD 310
           + MP K N   W S++  C  +++
Sbjct: 466 QSMPMKPNAALWGSLLLACRIHQN 489



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 179/416 (43%), Gaps = 74/416 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +IS Y +  E   AR +FD   ++D+VSWN M+ GY+     G +E A+ +FD MPERD 
Sbjct: 151 LISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYV---WCGEMENAQNMFDEMPERDV 207

Query: 61  VTWNTVISGYAKT-GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
           V+W+ +I GY K  GE+  A   F+SMP R++VSWN+MI G+ + G++  A E FB+M  
Sbjct: 208 VSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQ 267

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           ++  S S ++ G   + +  EA  +  +    C G +    +    +    Q G +++ R
Sbjct: 268 KNVISWSIMIDGYAXHRDSKEALNLFRQ--MLCQGIKPDRVSVVGAVSACSQLGALDQGR 325

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            +   +  N        R   +IV   +++  Y K G    AR IF  M ER+  SWN M
Sbjct: 326 WIHLYMKRN--------RMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVM 377

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           I G       +EA   F +M                            +R+P  +L+   
Sbjct: 378 IVGLGMNGFGKEALECFXQME--------------------------MERIPMDDLLFLG 411

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
            ++A    N   EG + +F QM+                   G+  L             
Sbjct: 412 VLMACSHANLVTEG-LHIFNQMK-------------------GVYRLE------------ 439

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
             P +     L+ +  R G + + + I + M +  N   W +++  C  H   T A
Sbjct: 440 --PKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLA 493


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 181/597 (30%), Positives = 323/597 (54%), Gaps = 48/597 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y K   +A+AR++FDEMP  ++ + N ++S    SR    + +   LF  MPERD 
Sbjct: 54  LLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSR---LVPDMERLFASMPERDA 110

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM-------PARNVVSWNAMISGFLQNGDVANAIEF 113
           V++N +I+G++ TG    +++L+ ++       P R  +S   M++  L +  + +++  
Sbjct: 111 VSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHC 170

Query: 114 FDRMPGRDSASL--SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
                G  + +   S LV    + G + +A RV  +  ++       V  YNTLI G  +
Sbjct: 171 QVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAK------TVVMYNTLITGLLR 224

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
              +E+A+ LF             +   R+ ++W +M+    + G  + A ++F +M   
Sbjct: 225 CKMIEDAKGLF------------QLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE 272

Query: 232 ----DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW--------NAMVSGYAQIGN 279
               D +++ ++++    +  +EE   +   +    T TW        +A+V  Y++  +
Sbjct: 273 GVGIDQYTFGSILTACGALAALEEGKQIHAYI----TRTWYEDNVFVGSALVDMYSKCRS 328

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           + LA   F+RM  +N++SW +MI G   N   E A++ F +MQ++G KPD  T  S++S 
Sbjct: 329 IRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISS 388

Query: 340 SSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            + +  L  G Q H + +   ++  + ++NAL+T+Y +CG+I +A  +F+EM    + VS
Sbjct: 389 CANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMS-FHDQVS 447

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           W A++ G A  G A E ++LF+ M +  + P  +TFI VLSAC+ AGLVE+G  +F SM 
Sbjct: 448 WTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQ 507

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            ++GI P  +H+  ++D+  R GR ++A + IK MP  PD   W  LL +CR+  N+E+ 
Sbjct: 508 KDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIG 567

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           + AAE L++ +P+N   YVLL +M+A  G+W +   +R  M+   +KK  G SW+ +
Sbjct: 568 KWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKY 624



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 207/448 (46%), Gaps = 52/448 (11%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +++ YAK+G +  A R+F+ MP  N+ + NA++S    +  V +    F  MP RD+ 
Sbjct: 52  NHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAV 111

Query: 124 SLSALVSGLIQNGELDEAA---RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           S +AL++G    G    +    R L++        E+ VR     +            R 
Sbjct: 112 SYNALITGFSSTGSPARSVQLYRALLR--------EESVRPTRITLSAMIMVASALSDRA 163

Query: 181 LFDKIPVNCDR-GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           L   +     R G G   F       + ++  YAK G +  AR +F++M  +    +NT+
Sbjct: 164 LGHSVHCQVLRLGFGAYAF-----VGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTL 218

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           I+G +    +E+A  LF  M   D++TW  MV+G  Q G    ALD F+R          
Sbjct: 219 ITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRR---------- 268

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
                                M+ EG   D++TF SIL+    +  L  G QIH  +T+T
Sbjct: 269 ---------------------MRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRT 307

Query: 360 VIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
              D V + +AL+ MY++C +I  A  +F  M   +N++SW AMI G   +  + EA+  
Sbjct: 308 WYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT-CRNIISWTAMIVGYGQNACSEEAVRA 366

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  M+   + P   T  SV+S+CA+   +EEG Q F  +    G+   I    +LV + G
Sbjct: 367 FSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYG 425

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           + G +EDA  L   M F  D+  W AL+
Sbjct: 426 KCGSIEDAHRLFDEMSFH-DQVSWTALV 452



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 32/252 (12%)

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           TF  N +++ Y     +  A  +F +MP P+  T NA++S  A    +      F  MP+
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPE 107

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLF-IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           ++ VS+N++I G  +      +++L+   ++ E  +P R T S+++ ++S + D  LG  
Sbjct: 108 RDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHS 167

Query: 352 IHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMK-------------LL---- 393
           +H  V +        + + L+ MYA+ G I +AR +F+EM+             LL    
Sbjct: 168 VHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKM 227

Query: 394 -------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
                        ++ ++W  M+ G   +G   EAL++F+ MR+  V     TF S+L+A
Sbjct: 228 IEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTA 287

Query: 441 CAHAGLVEEGRQ 452
           C     +EEG+Q
Sbjct: 288 CGALAALEEGKQ 299



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 43/200 (21%)

Query: 333 FSSILSMSSG---IVDLHLGMQIHQMVTKTVI--PDVPINNALITMYARCGAIVEARIIF 387
           +++ILS ++G      + +   +H ++ KT +  P   + N L+T YA+ G +  AR +F
Sbjct: 12  YAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVF 71

Query: 388 EEM---------KLL---------------------KNVVSWNAMIGGCASHGFATEALE 417
           +EM          LL                     ++ VS+NA+I G +S G    +++
Sbjct: 72  DEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQ 131

Query: 418 LFKS-MRSFKVLPTYITF---ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           L+++ +R   V PT IT    I V SA +   L      H + +   +G    +   + L
Sbjct: 132 LYRALLREESVRPTRITLSAMIMVASALSDRALGHS--VHCQVLRLGFGAYAFVG--SPL 187

Query: 474 VDIVGRHGRLEDAMDLIKGM 493
           VD+  + G + DA  + + M
Sbjct: 188 VDMYAKMGLIRDARRVFQEM 207


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 183/580 (31%), Positives = 311/580 (53%), Gaps = 66/580 (11%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G ++ A  LF  + E      N+++ GY KT  ++ AL LF+SMP R+VVSWN M+S   
Sbjct: 187 GTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 246

Query: 103 QNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
           Q+G V  A++    M  +    DS + ++ ++   +   L    ++  +        +  
Sbjct: 247 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPY 306

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           V +   L+  Y + G  +EA+ +F+ +              RN V+W  +I  + + G  
Sbjct: 307 VAS--ALVELYAKCGCFKEAKGVFNSL------------HDRNNVAWTVLIAGFLQHGCF 352

Query: 219 VSAREIFEQM----LERDTFSWNTMISG-------------------------------- 242
             + E+F QM    +  D F+  T+ISG                                
Sbjct: 353 TESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSL 412

Query: 243 ---YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
              Y    +++ A ++F  M   D ++W +M++ ++Q+GN+  A +FF  M  KN+++WN
Sbjct: 413 ISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWN 472

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           +M+     +   E  ++++  M  E + +PD  T+ ++     G  DL       Q++ +
Sbjct: 473 AMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFK---GCADLGANKLGDQIIGR 529

Query: 359 TV----IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           TV    I D  + NA+ITMY++CG I+EAR +F+ + + K++VSWNAMI G + HG   +
Sbjct: 530 TVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNV-KDIVSWNAMITGYSQHGMGKQ 588

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           A+E+F  +      P YI++++VLS C+H+GLV+EG+ +F  M   + I P +EHF+ +V
Sbjct: 589 AIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMV 648

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D++GR G L +A DLI  MP +P   VWGALL AC++H N ELA++AA+ + +++  +S 
Sbjct: 649 DLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSG 708

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            Y+L+  +YAD G+ DD+ ++R LM+   IKK  GYSW++
Sbjct: 709 SYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWME 748



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 238/503 (47%), Gaps = 73/503 (14%)

Query: 1   MISGYVKRREMAKARKLF-DEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           ++  Y+    +  AR+L   ++   +V++ NVM++GY+     G L +A  LF  MP RD
Sbjct: 45  LLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVK---LGRLSDAVELFGRMPARD 101

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN-----GDVANAIEFF 114
             +WNT++SGY ++ +   +L  F SM      S NA    +        G+ + A++  
Sbjct: 102 VASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLL 161

Query: 115 DRM----PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG 170
             +       DS   +ALV   ++ G +D A+R+ V+        E  +   N+++VGY 
Sbjct: 162 GMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRI------KEPTIFCRNSMLVGYV 215

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
           +   V+ A +LFD +P            +R++VSWN M+   +++G V  A ++   M  
Sbjct: 216 KTYGVDHALELFDSMP------------ERDVVSWNMMVSALSQSGRVREALDMVVDMQS 263

Query: 231 R----DTFSWNTMISGYIHVLDMEEASNLFVK----MPHPDTLTWNAMVSGYAQIGNLEL 282
           +    D+ ++ + ++    +  +     L  +    +P  D    +A+V  YA+ G  + 
Sbjct: 264 KGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKE 323

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F  +  +N V+W  +IAG   +  +  +++LF QM+ E    D+   ++++S    
Sbjct: 324 AKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCS 383

Query: 343 IVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARC------------------------ 377
            +DL LG Q+H +  K+  I  V ++N+LI+MYA+C                        
Sbjct: 384 RMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSM 443

Query: 378 -------GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK-VLP 429
                  G I +AR  F+ M   KNV++WNAM+G    HG   + L ++  M S K V P
Sbjct: 444 ITAHSQVGNIAKAREFFDGMS-TKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRP 502

Query: 430 TYITFISVLSACAHAGLVEEGRQ 452
            ++T++++   CA  G  + G Q
Sbjct: 503 DWVTYVTLFKGCADLGANKLGDQ 525



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 215/496 (43%), Gaps = 65/496 (13%)

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           + L+   +  G L +A R+L+      D     V  +N ++ GY + GR+ +A +LF ++
Sbjct: 43  NTLLHAYLSCGALPDARRLLLT-----DIAHPNVITHNVMLNGYVKLGRLSDAVELFGRM 97

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY-- 243
           P             R++ SWN+++  Y ++   +++ E F  M      S N     Y  
Sbjct: 98  PA------------RDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAM 145

Query: 244 ------------IHVLDMEE--------------------------ASNLFVKMPHPDTL 265
                       + +L M +                          AS LFV++  P   
Sbjct: 146 KSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIF 205

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
             N+M+ GY +   ++ AL+ F  MP++++VSWN M++    +     A+ + + MQ +G
Sbjct: 206 CRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG 265

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV-IPDVPINNALITMYARCGAIVEAR 384
            + D  T++S L+  + +  L  G Q+H  V + +   D  + +AL+ +YA+CG   EA+
Sbjct: 266 VRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAK 325

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F  +   +N V+W  +I G   HG  TE++ELF  MR+  +        +++S C   
Sbjct: 326 GVFNSLH-DRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSR 384

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
             +  GRQ   S+  + G    +    SL+ +  +   L+ A  + + M  E D   W +
Sbjct: 385 MDLCLGRQ-LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMN-EKDIVSWTS 442

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           ++ A   H+ V     A E    +  +N   +  +   Y   G  +D   +  +M S   
Sbjct: 443 MITA---HSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKD 499

Query: 565 KKPTGYSWVD-FSPCG 579
            +P   ++V  F  C 
Sbjct: 500 VRPDWVTYVTLFKGCA 515



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 165/355 (46%), Gaps = 43/355 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQ----RDVVSWNVMISGYISSRGSGFLEEARYLFDIMP 56
           +ISG   R ++   R+L     +    + VV  N +IS Y        L+ A  +F  M 
Sbjct: 377 LISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDN---LQSAESIFRFMN 433

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E+D V+W ++I+ +++ G + +A   F+ M  +NV++WNAM+  ++Q+G   + +  ++ 
Sbjct: 434 EKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNV 493

Query: 117 MPGR-----DSASLSALVSG---LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           M        D  +   L  G   L  N   D+     VK G   D         N +I  
Sbjct: 494 MLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILD-----TSVANAVITM 548

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y + GR+ EARK+FD + V            ++IVSWN+MI  Y++ G    A EIF+ +
Sbjct: 549 YSKCGRILEARKVFDFLNV------------KDIVSWNAMITGYSQHGMGKQAIEIFDDI 596

Query: 229 LER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGN 279
           L+R    D  S+  ++SG  H   ++E  + F  M       P    ++ MV    + G+
Sbjct: 597 LKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGH 656

Query: 280 LELALDFFKRMPQKNLVS-WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           L  A D    MP K     W ++++ C+ + + E A +L  +   E + PD  ++
Sbjct: 657 LTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELA-ELAAKHVFELDSPDSGSY 710



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 158/339 (46%), Gaps = 41/339 (12%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVK-MPHPDTLTWNAMVSGYAQIGNLELALDFF 287
           L    F  NT++  Y+    + +A  L +  + HP+ +T N M++GY ++G L  A++ F
Sbjct: 35  LASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELF 94

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDL 346
            RMP +++ SWN++++G   ++ Y  +++ F+ M   G+  P+  TF+  +     + + 
Sbjct: 95  GRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGER 154

Query: 347 HLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMK---------LL--- 393
            L +Q+  MV K     D  +  AL+ M+ RCG +  A  +F  +K         +L   
Sbjct: 155 SLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGY 214

Query: 394 ------------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
                             ++VVSWN M+   +  G   EAL++   M+S  V     T+ 
Sbjct: 215 VKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYT 274

Query: 436 SVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           S L+ACA    +  G+Q H + + N   I+P +   ++LV++  + G  ++A  +   + 
Sbjct: 275 SSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVA--SALVELYAKCGCFKEAKGVFNSL- 331

Query: 495 FEPDKAVWGALLGACRVHN----NVELAQVAAEALMKVE 529
            + +   W  L+     H     +VEL       LM ++
Sbjct: 332 HDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLD 370


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 194/621 (31%), Positives = 326/621 (52%), Gaps = 62/621 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y K   +   R++FDEM  RDVVSWN +++GY  +R   F ++   LF +M     
Sbjct: 143 LVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNR---FNDQVWELFCLMQVEGY 199

Query: 57  -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                                              E + +  N++IS  +K+G + +A  
Sbjct: 200 RPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARV 259

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN-GELDE 140
           +F++M  ++ VSWN+MI+G + NG    A E F+ M    +    A  + +I++   L E
Sbjct: 260 VFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKE 319

Query: 141 AARV-LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
              V ++ C +   G          L+V   +   +++A  LF  +              
Sbjct: 320 LGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLM-----------HGV 368

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNL 255
           +++VSW +MI  Y + GD   A  +F  M    ++ + F+++T+++    V   E  + +
Sbjct: 369 QSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAEV 428

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
                   +    A++  + +IGN+  A+  F+ +  K++++W++M+AG     + E A 
Sbjct: 429 IKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAA 488

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSG-IVDLHLGMQIHQMVTKTVIPD-VPINNALITM 373
           K+F Q+  EG KP+  TF SI++  +     +  G Q H    K  + + + ++++L+T+
Sbjct: 489 KIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTL 548

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           YA+ G I  A  IF+  K  +++VSWN+MI G A HG A +ALE+F+ M+   +    IT
Sbjct: 549 YAKRGNIESAHEIFKRQKE-RDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAIT 607

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           FI V+SACAHAGLV +G+ +F  M+N++ I P +EH++ ++D+  R G L  AMD+I GM
Sbjct: 608 FIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGM 667

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           PF P   VW  +L A RVH N+EL ++AAE ++ +EP++S  YVLL N+YA  G W +  
Sbjct: 668 PFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKV 727

Query: 554 EVRLLMKSNNIKKPTGYSWVD 574
            VR LM    +KK  GYSW++
Sbjct: 728 NVRKLMDKRRVKKEPGYSWIE 748



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 148/577 (25%), Positives = 253/577 (43%), Gaps = 96/577 (16%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DIMPER--------- 58
           A++LFD+ P RD+   N ++  Y     +   +EA +LF       + P+          
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQT---QEALHLFVSLYRSGLSPDSYTMSCVLSV 111

Query: 59  ---------------DCVTW---------NTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
                           CV           N+++  Y KTG + +  R+F+ M  R+VVSW
Sbjct: 112 CAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSW 171

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LVK 147
           N++++G+  N       E F  M       D  ++S +++ L   G +    ++   +VK
Sbjct: 172 NSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVK 231

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
            G      E LV   N+LI    + G + +AR +FD +              ++ VSWNS
Sbjct: 232 LGFET---ERLV--CNSLISMLSKSGMLRDARVVFDNME------------NKDSVSWNS 274

Query: 208 MIMCYAKAGDVVSAREIFEQM-LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL- 265
           MI  +   G  + A E F  M L     +  T  S       ++E     V++ H  TL 
Sbjct: 275 MIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELG--LVRVLHCKTLK 332

Query: 266 --------TWNAMVSGYAQIGNLELALDFFKRMPQ-KNLVSWNSMIAGCETNKDYEGAIK 316
                      A++    +   ++ A   F  M   +++VSW +MI+G   N D + A+ 
Sbjct: 333 SGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVN 392

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYA 375
           LF  M+ EG KP+  T+S+IL++   +       +IH  V KT       +  AL+  + 
Sbjct: 393 LFSLMRREGVKPNHFTYSTILTVQHAV----FISEIHAEVIKTNYEKSSSVGTALLDAFV 448

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           + G I +A  +FE ++  K+V++W+AM+ G A  G   EA ++F  +    + P   TF 
Sbjct: 449 KIGNISDAVKVFELIE-TKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFC 507

Query: 436 SVLSAC-AHAGLVEEGRQHFKSMVNEYGIEPRIEHF----ASLVDIVGRHGRLEDAMDLI 490
           S+++AC A    VE+G+Q      + Y I+ R+ +     +SLV +  + G +E A ++ 
Sbjct: 508 SIINACTAPTASVEQGKQ-----FHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIF 562

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
           K    E D   W +++     H   + A    E + K
Sbjct: 563 KRQK-ERDLVSWNSMISGYAQHGQAKKALEVFEEMQK 598


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 185/543 (34%), Positives = 302/543 (55%), Gaps = 55/543 (10%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D V  ++ +  YAK    E+A++LF+ MP R+V SWN +IS + Q+G    A+E F+ M 
Sbjct: 332 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 391

Query: 119 ----GRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
                 DS +L+ ++S   +  +L+    +   LV+ G   DG        + L+  YG+
Sbjct: 392 VSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDG-----FVSSALVDMYGK 446

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE- 230
            G +E A+++F++I             ++N+VSWNSMI  Y+  GD  S  E+F +M E 
Sbjct: 447 CGCLEMAKEVFEQIQ------------RKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEE 494

Query: 231 --RDTF------------SWNTMISGYIH--VLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
             R T             S N  +  +IH  ++     +++FV          ++++  Y
Sbjct: 495 GIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVN---------SSLIDLY 545

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
            + GN+  A + F+ MP+ N+VSWN MI+G      Y  A+ +F  M+  G KPD  TF+
Sbjct: 546 FKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFT 605

Query: 335 SILSMSSGIVDLHLGMQIHQMV--TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
           S+L   S +  L  G +IH  +  +K  I +V +  AL+ MYA+CGA+ EA  IF ++  
Sbjct: 606 SVLPACSQLAVLEKGKEIHNFIIESKLEINEV-VMGALLDMYAKCGAVDEALHIFNQLPE 664

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
            ++ VSW +MI    SHG A EAL+LF+ M+     P  +TF+++LSAC+HAGLV+EG  
Sbjct: 665 -RDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCY 723

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP-FEPDKAVWGALLGACRV 511
           +F  M+ EYG +P +EH++ L+D++GR GRL +A ++++  P    D  +   L  AC +
Sbjct: 724 YFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHL 783

Query: 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           H  ++L +     L++ +P++ + Y++L NMYA V +WD+  +VRL +K   +KK  G S
Sbjct: 784 HKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCS 843

Query: 572 WVD 574
           W++
Sbjct: 844 WIE 846



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 141/464 (30%), Positives = 215/464 (46%), Gaps = 94/464 (20%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  ++V  +S +  YAK      A ++F++M ERD  SWN +IS Y      E+A  LF 
Sbjct: 329 FAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFE 388

Query: 258 KMP----HPDTLTW-----------------------------------NAMVSGYAQIG 278
           +M      PD++T                                    +A+V  Y + G
Sbjct: 389 EMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCG 448

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
            LE+A + F+++ +KN+VSWNSMIAG     D +  I+LF +M  EG +P   T SSIL 
Sbjct: 449 CLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILM 508

Query: 339 MSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
             S  V+L LG  IH  + +  V  D+ +N++LI +Y +CG I  A  +F+ M    NVV
Sbjct: 509 ACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP-KTNVV 567

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWN MI G    G   EAL +F  MR   V P  ITF SVL AC+   ++E+G++     
Sbjct: 568 SWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKE----- 622

Query: 458 VNEYGIEPRIE----HFASLVDIVGRHGRLEDAMDLIKGMP------------------- 494
           ++ + IE ++E       +L+D+  + G +++A+ +   +P                   
Sbjct: 623 IHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQ 682

Query: 495 -FE--------------PDKAVWGALLGACRVHNNVE-----LAQVAAEALMKVEPENST 534
            FE              PDK  + A+L AC     V+       Q+ AE   K   E+  
Sbjct: 683 AFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEH-- 740

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFSPC 578
            Y  L ++   VGR  +A E+  L ++ +I++  G     FS C
Sbjct: 741 -YSCLIDLLGRVGRLREAYEI--LQRTPDIREDVGLLSTLFSAC 781



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 138/487 (28%), Positives = 199/487 (40%), Gaps = 127/487 (26%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP----ERDC 60
           Y K      A KLFDEMP+RDV SWN +IS Y      G  E+A  LF+ M     + D 
Sbjct: 343 YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQ---DGQPEKALELFEEMKVSGFKPDS 399

Query: 61  VTWNTVISG-----------------------------------YAKTGEMEEALRLFNS 85
           VT  TVIS                                    Y K G +E A  +F  
Sbjct: 400 VTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQ 459

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
           +  +NVVSWN+MI+G+   GD  + IE F RM   D   +   ++ L         + +L
Sbjct: 460 IQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM---DEEGIRPTLTTL---------SSIL 507

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
           + C    +            I GY  R RVE                        +I   
Sbjct: 508 MACSRSVN------LQLGKFIHGYIIRNRVEA-----------------------DIFVN 538

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PH 261
           +S+I  Y K G++ SA  +F+ M + +  SWN MISGY+ V    EA  +F  M      
Sbjct: 539 SSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVK 598

Query: 262 PDTLTWN-----------------------------------AMVSGYAQIGNLELALDF 286
           PD +T+                                    A++  YA+ G ++ AL  
Sbjct: 599 PDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHI 658

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIV 344
           F ++P+++ VSW SMIA   ++     A+KLF +MQ    KPD+ TF +ILS  S  G+V
Sbjct: 659 FNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLV 718

Query: 345 DLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS-WNAM 402
           D       +QM+ +    P V   + LI +  R G + EA  I +    ++  V   + +
Sbjct: 719 D-EGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTL 777

Query: 403 IGGCASH 409
              C  H
Sbjct: 778 FSACHLH 784



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 160/361 (44%), Gaps = 67/361 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           ++  Y K   +  A+++F+++ +++VVSWN MI+GY                        
Sbjct: 440 LVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPT 499

Query: 37  ISSRGSGFLEEAR------------YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           +++  S  +  +R            Y+     E D    +++I  Y K G +  A  +F 
Sbjct: 500 LTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQ 559

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
           +MP  NVVSWN MISG+++ G    A+  F  M       D+ + ++++    Q   L++
Sbjct: 560 NMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEK 619

Query: 141 AARVL-VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
              +      S+ +  E ++ A   L+  Y + G V+EA  +F+++P            +
Sbjct: 620 GKEIHNFIIESKLEINEVVMGA---LLDMYAKCGAVDEALHIFNQLP------------E 664

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEEASNL 255
           R+ VSW SMI  Y   G    A ++FE+M + D      ++  ++S   H   ++E    
Sbjct: 665 RDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYY 724

Query: 256 FVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP--QKNLVSWNSMIAGCETN 308
           F +M       P    ++ ++    ++G L  A +  +R P  ++++   +++ + C  +
Sbjct: 725 FNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLH 784

Query: 309 K 309
           K
Sbjct: 785 K 785



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 108/201 (53%), Gaps = 6/201 (2%)

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           ++  WN ++A C  N  +   +++F ++      KPD  T+ S+L   SG+  +  G  +
Sbjct: 261 DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 320

Query: 353 HQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H  V K+    DV + ++ + MYA+C    +A  +F+EM   ++V SWN +I      G 
Sbjct: 321 HTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMP-ERDVASWNNVISCYYQDGQ 379

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHF 470
             +ALELF+ M+     P  +T  +V+S+CA    +E G++ H + + + + ++  +   
Sbjct: 380 PEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVS-- 437

Query: 471 ASLVDIVGRHGRLEDAMDLIK 491
           ++LVD+ G+ G LE A ++ +
Sbjct: 438 SALVDMYGKCGCLEMAKEVFE 458



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 348 LGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           LG  IHQ +V+  +  ++ +  +LI +Y  C     A+++F+ ++   ++  WN ++  C
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAAC 272

Query: 407 ASHGFATEALELFKSMRSFKVL-PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
             +    E LE+F  +  F  L P   T+ SVL AC+  G V  G+    + V + G   
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKM-VHTHVIKSGFAM 331

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
            +   +S V +  +    EDA+ L   MP E D A W
Sbjct: 332 DVVVMSSAVGMYAKCNVFEDAIKLFDEMP-ERDVASW 367


>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
          Length = 577

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 196/581 (33%), Positives = 303/581 (52%), Gaps = 70/581 (12%)

Query: 14  ARKLFDEMPQRDVVS--------WNVMISGYISSRGSGFLEEARYLFDIMPER----DCV 61
           AR +F E   R V          WN +I  +  S G+    +A  LF +M E     D  
Sbjct: 38  ARCVFHEYHSRSVSPGEIKDPFLWNAVIKSH--SHGAD-PRKALLLFCLMLENGVLVDKF 94

Query: 62  TWNTVISGYAKTGEMEEALR----LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           + + V+   ++ G  +E ++    L  S    ++   N +I  +L+ G +  A + FDRM
Sbjct: 95  SMSLVLKACSRLGFAKEGMQVHGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRM 154

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P RDS S                                     YN++I GY + G VE 
Sbjct: 155 PQRDSVS-------------------------------------YNSMIDGYVKCGLVES 177

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDTFSW 236
           A +LFD +P          R KRN+++WNSMI  YA+  D V+ A ++F++M E+D  SW
Sbjct: 178 AGELFDLMP----------REKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISW 227

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           N+MI GY+    +E+A  LF  MP  D +TW  M+ GY ++G +  A   F +MP +++V
Sbjct: 228 NSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRDVV 287

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIH-Q 354
           ++NSM++G   N+ +  A+++F  M+ E    PD  T   +LS  + +  L   + +H  
Sbjct: 288 AYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAIDMHLY 347

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           +V K  +    +  ALI MY++CG+I  A  +FE ++  K++  WNAMIGG A HG    
Sbjct: 348 IVEKRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIES-KSIDHWNAMIGGLAVHGLGES 406

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           A ++   +    + P +ITF+ VL+AC+H+GLV+EG   F+ M  ++ IEPR++H+  +V
Sbjct: 407 AFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMV 466

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           DI+ R G +E A +LI+ MP EP+  +W   L AC  H   E  ++ A+ L+     N +
Sbjct: 467 DILARSGSIELAKNLIEEMPIEPNDVIWRTFLNACSHHKEFETGELVAKHLILQAGYNPS 526

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
            YVLL NMYA  G W D   VR +MK   I+K  G SW++ 
Sbjct: 527 SYVLLSNMYASNGMWKDVRRVRTMMKEKKIEKLPGCSWIEL 567



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 186/397 (46%), Gaps = 75/397 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMP--QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           MI GYVK   +  A +LFD MP  +R++++WN MI GY + R  G +  A  LFD MPE+
Sbjct: 165 MIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGY-AQRADG-VNVASKLFDEMPEK 222

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D ++WN++I GY K G +E+A  LF+ MP R+VV+W  MI G+ + G V  A   FD+MP
Sbjct: 223 DLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMP 282

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV---GYGQRGRV 175
            RD  + ++++SG +QN    EA  V     +  +    L     TL++      Q GR+
Sbjct: 283 HRDVVAYNSMMSGFVQNRYHIEALEVF----NHMEKESHLSPDETTLVIVLSAIAQLGRL 338

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWN---SMIMCYAKAGDVVSAREIFEQMLERD 232
            +A  +   I             KR ++S     ++I  Y+K G +  A  +FE +  + 
Sbjct: 339 TKAIDMHLYIVE-----------KRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKS 387

Query: 233 TFSWNTMISGY-IHVLDMEEASNLFVKMPH----PDTLT--------------------- 266
              WN MI G  +H L  E A ++ +++      PD +T                     
Sbjct: 388 IDHWNAMIGGLAVHGLG-ESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCF 446

Query: 267 ---------------WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKD 310
                          +  MV   A+ G++ELA +  + MP + N V W + +  C  +K+
Sbjct: 447 ELMRRKHKIEPRLQHYGCMVDILARSGSIELAKNLIEEMPIEPNDVIWRTFLNACSHHKE 506

Query: 311 YEG----AIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
           +E     A  L +Q    G  P  +   S +  S+G+
Sbjct: 507 FETGELVAKHLILQ---AGYNPSSYVLLSNMYASNGM 540


>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
          Length = 493

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 172/494 (34%), Positives = 274/494 (55%), Gaps = 48/494 (9%)

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
           MP RNVVSW ++I+G+ QNG   NA+EF+ +M               +Q+G + +     
Sbjct: 1   MPERNVVSWTSVIAGYSQNGQGGNALEFYFQM---------------LQSGVMPDQF--- 42

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
                           + ++I      G +   R+L   +  +         F  +I++ 
Sbjct: 43  ---------------TFGSIIKACSSLGDIGLGRQLHAHVLKS--------EFGAHIIAQ 79

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH---P 262
           N++I  Y K+  ++ A ++F +M  RD  SW +MI+G+  +    EA   F +M H   P
Sbjct: 80  NALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGRP 139

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRM-PQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           D + WNA+++G+A  G L  A+ FF+ M    +LVSWN+++  C  +   E   +L   M
Sbjct: 140 DLVAWNAIIAGFA-YGELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLM 198

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAI 380
            +   +PD  T +++L  S+  V + +G Q+H    KT +  D  + N LI +YA+CG++
Sbjct: 199 CISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSL 258

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
             A  IF+ M +  +VVSW+++I G A  G+  EAL+LFK+MR   V P ++TF+ VL+A
Sbjct: 259 KTAHKIFDSM-INPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTA 317

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C+H GLVEEG + + +M  E+GI P  EH + +VD++ R G L +A   I  M F+PD  
Sbjct: 318 CSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIV 377

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
           VW  LL AC+ H NV++ + AAE ++K++P NS  +VLL N+YA  G W+D   +R LMK
Sbjct: 378 VWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMK 437

Query: 561 SNNIKKPTGYSWVD 574
              ++K  G SW++
Sbjct: 438 QRGVRKVPGQSWIE 451



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 104/438 (23%), Positives = 189/438 (43%), Gaps = 96/438 (21%)

Query: 21  MPQRDVVSWNVMISGYISS-RGSGFLEEARYLFD--IMPERDCVTWNTVISGYAKTGEME 77
           MP+R+VVSW  +I+GY  + +G   LE    +    +MP++   T+ ++I   +  G++ 
Sbjct: 1   MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQ--FTFGSIIKACSSLGDIG 58

Query: 78  EALRL----FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI 133
              +L      S    ++++ NA+IS + ++  + +A++ F RM  RD  S  ++++G  
Sbjct: 59  LGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFS 118

Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
           Q G   EA     +   +  G  DLV A+N +I G+   G + +A   F+++  N D   
Sbjct: 119 QLGYELEALCYFKEMLHQ--GRPDLV-AWNAIIAGFAY-GELRDAIFFFEEMRCNAD--- 171

Query: 194 GNVRFKRNIVSWNSM------------------IMC-------YAKAGDVVSAR------ 222
                   +VSWN++                  +MC       Y    +V+ A       
Sbjct: 172 --------LVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSI 223

Query: 223 EIFEQM--------LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
           EI  Q+        L  DT   N +I  Y     ++ A  +F  M +PD ++W++++ GY
Sbjct: 224 EIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGY 283

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
           AQ G  E AL  FK M + ++                               KP+  TF 
Sbjct: 284 AQFGYGEEALKLFKTMRRLDV-------------------------------KPNHVTFV 312

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
            +L+  S +  +  G +++  + K   + P     + ++ + AR G + EA     +M  
Sbjct: 313 GVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAF 372

Query: 393 LKNVVSWNAMIGGCASHG 410
             ++V W  ++  C +HG
Sbjct: 373 DPDIVVWKTLLAACKTHG 390


>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
 gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 187/506 (36%), Positives = 278/506 (54%), Gaps = 33/506 (6%)

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR-------MPGRDSA 123
           A    +   + L+N +   +    N ++  F+   D   A+ F+         +P   + 
Sbjct: 102 ACLNSVSHCVSLYNHIEEPDAFMCNTIMRSFVNVNDPFGALRFYYEKMIAKWVLPNHYTF 161

Query: 124 SLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
            L A V   I  G L E  +V   +VK G   D     +   N+ I  Y   GR  +AR 
Sbjct: 162 PLVAKVCADI--GSLREGQKVHALVVKFGFELD-----LFVRNSFIRFYSVCGRTSDARM 214

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +FD              F  ++VSWNSMI  Y K G++  AREIF++M ERD F+WN+MI
Sbjct: 215 VFDN------------GFVLDLVSWNSMIDGYVKNGELGLAREIFDEMYERDIFTWNSMI 262

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           SGY+ V DME A  LF KMP  D ++WN M+ G+A+I ++ +A  FF  MP +N+VSWN 
Sbjct: 263 SGYVGVGDMEAARGLFDKMPSRDVVSWNCMIDGFARIKDVSMAAKFFDEMPLRNVVSWNV 322

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTK 358
           M+A     K Y   ++ F  M V G+  PD  +  S+L+  + +  L  G  +H  M   
Sbjct: 323 MLALYLRCKKYSDCLRFF-DMMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHSYMKDN 381

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
            + PD+ ++ AL+TMYA+CGA+  AR +F++M   K+VVSWN+MI G   HG   +ALE+
Sbjct: 382 GIKPDMLLSTALLTMYAKCGAMDLAREVFDKMPE-KSVVSWNSMIIGYGIHGHGDKALEM 440

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F+ M     +P   TF+SVLSAC+H+G+V  G  +F  M  +Y I+P+ EH+  LVD++G
Sbjct: 441 FREMEKGGPMPNDATFMSVLSACSHSGMVWNGWWYFDLMHRKYRIQPKPEHYGCLVDLLG 500

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           + G  E + DL +    E +  +WG LL ACR H   E  ++ A+ L+K+ P +  PY+L
Sbjct: 501 QAGLKEPSEDLTRKTHTEVEPTLWGDLLSACRAHCISEPGEILAKQLIKLFPNHVVPYLL 560

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNI 564
           L N Y   GRWDD   +R+ +K+  +
Sbjct: 561 LSNTYVAEGRWDDVENLRMTLKNKTL 586



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/232 (37%), Positives = 135/232 (58%), Gaps = 21/232 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI GYVK  E+  AR++FDEM +RD+ +WN MISGY+   G G +E AR LFD MP RD 
Sbjct: 230 MIDGYVKNGELGLAREIFDEMYERDIFTWNSMISGYV---GVGDMEAARGLFDKMPSRDV 286

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG- 119
           V+WN +I G+A+  ++  A + F+ MP RNVVSWN M++ +L+    ++ + FFD M G 
Sbjct: 287 VSWNCMIDGFARIKDVSMAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMVGG 346

Query: 120 ---RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               D ASL ++++   +   LD+     V    + +G +  +     L+  Y + G ++
Sbjct: 347 DFVPDEASLVSVLTACAELKMLDQGK--WVHSYMKDNGIKPDMLLSTALLTMYAKCGAMD 404

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
            AR++FDK+P            ++++VSWNSMI+ Y   G    A E+F +M
Sbjct: 405 LAREVFDKMP------------EKSVVSWNSMIIGYGIHGHGDKALEMFREM 444



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 195/410 (47%), Gaps = 44/410 (10%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D    N+ I  Y+  G   +A  +F++    ++VSWN+MI G+++NG++  A E FD 
Sbjct: 190 ELDLFVRNSFIRFYSVCGRTSDARMVFDNGFVLDLVSWNSMIDGYVKNGELGLAREIFDE 249

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           M  RD  + ++++SG +  G+++ A  +  K  SR     D+V ++N +I G+ +   V 
Sbjct: 250 MYERDIFTWNSMISGYVGVGDMEAARGLFDKMPSR-----DVV-SWNCMIDGFARIKDVS 303

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RD 232
            A K FD++P+            RN+VSWN M+  Y +          F+ M+      D
Sbjct: 304 MAAKFFDEMPL------------RNVVSWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPD 351

Query: 233 TFSWNTMISGY--IHVLDMEEASNLFVKMP--HPDTLTWNAMVSGYAQIGNLELALDFFK 288
             S  ++++    + +LD  +  + ++K     PD L   A+++ YA+ G ++LA + F 
Sbjct: 352 EASLVSVLTACAELKMLDQGKWVHSYMKDNGIKPDMLLSTALLTMYAKCGAMDLAREVFD 411

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
           +MP+K++VSWNSMI G   +   + A+++F +M+  G  P+  TF S+LS  S     H 
Sbjct: 412 KMPEKSVVSWNSMIIGYGIHGHGDKALEMFREMEKGGPMPNDATFMSVLSACS-----HS 466

Query: 349 GM------QIHQMVTKTVIPDVPIN-NALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           GM          M  K  I   P +   L+ +  + G    +  +  +         W  
Sbjct: 467 GMVWNGWWYFDLMHRKYRIQPKPEHYGCLVDLLGQAGLKEPSEDLTRKTHTEVEPTLWGD 526

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
           ++  C +H  +     L K +   K+ P ++    +LS       V EGR
Sbjct: 527 LLSACRAHCISEPGEILAKQL--IKLFPNHVVPYLLLSNT----YVAEGR 570



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 140/292 (47%), Gaps = 33/292 (11%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G   +AR +FD     D V+WN++I GY K GE+  A  +F+ M  R++ +WN+MISG++
Sbjct: 207 GRTSDARMVFDNGFVLDLVSWNSMIDGYVKNGELGLAREIFDEMYERDIFTWNSMISGYV 266

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR--------------VLVKC 148
             GD+  A   FD+MP RD  S + ++ G  +  ++  AA+              V++  
Sbjct: 267 GVGDMEAARGLFDKMPSRDVVSWNCMIDGFARIKDVSMAAKFFDEMPLRNVVSWNVMLAL 326

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC-----DRGE------GNVR 197
             RC    D +R ++ ++ G      V +   L   +         D+G+       +  
Sbjct: 327 YLRCKKYSDCLRFFDMMVGG----DFVPDEASLVSVLTACAELKMLDQGKWVHSYMKDNG 382

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
            K +++   +++  YAK G +  ARE+F++M E+   SWN+MI GY      ++A  +F 
Sbjct: 383 IKPDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFR 442

Query: 258 KM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
           +M    P P+  T+ +++S  +  G +     +F  M +K  +       GC
Sbjct: 443 EMEKGGPMPNDATFMSVLSACSHSGMVWNGWWYFDLMHRKYRIQPKPEHYGC 494


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 181/597 (30%), Positives = 323/597 (54%), Gaps = 48/597 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y K   +A+AR++FDEMP  ++ + N ++S    SR    + +   LF  MPERD 
Sbjct: 54  LLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSR---LVPDMERLFASMPERDA 110

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM-------PARNVVSWNAMISGFLQNGDVANAIEF 113
           V++N +I+G++ TG    +++L+ ++       P R  +S   M++  L +  + +++  
Sbjct: 111 VSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHC 170

Query: 114 FDRMPGRDSASL--SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
                G  + +   S LV    + G + +A RV  +  ++       V  YNTLI G  +
Sbjct: 171 QVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKT------VVMYNTLITGLLR 224

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
              +E+A+ LF             +   R+ ++W +M+    + G  + A ++F +M   
Sbjct: 225 CKMIEDAKGLF------------QLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE 272

Query: 232 ----DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW--------NAMVSGYAQIGN 279
               D +++ ++++    +  +EE   +   +    T TW        +A+V  Y++  +
Sbjct: 273 GVGIDQYTFGSILTACGALAALEEGKQIHAYI----TRTWYEDNVFVGSALVDMYSKCRS 328

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           + LA   F+RM  +N++SW +MI G   N   E A++ F +MQ++G KPD  T  S++S 
Sbjct: 329 IRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISS 388

Query: 340 SSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            + +  L  G Q H + +   ++  + ++NAL+T+Y +CG+I +A  +F+EM    + VS
Sbjct: 389 CANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMS-FHDQVS 447

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           W A++ G A  G A E ++LF+ M +  + P  +TFI VLSAC+ AGLVE+G  +F SM 
Sbjct: 448 WTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQ 507

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            ++GI P  +H+  ++D+  R GR ++A + IK MP  PD   W  LL +CR+  N+E+ 
Sbjct: 508 KDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIG 567

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           + AAE L++ +P+N   YVLL +M+A  G+W +   +R  M+   +KK  G SW+ +
Sbjct: 568 KWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKY 624



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 131/445 (29%), Positives = 206/445 (46%), Gaps = 46/445 (10%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +++ YAK+G +  A R+F+ MP  N+ + NA++S    +  V +    F  MP RD+ 
Sbjct: 52  NHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAV 111

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S +AL++G    G    + ++      R    E+ VR     +            R L  
Sbjct: 112 SYNALITGFSSTGSPARSVQLY-----RALLREESVRPTRITLSAMIMVASALSDRALGH 166

Query: 184 KIPVNCDR-GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
            +     R G G   F       + ++  YAK G +  AR +F++M  +    +NT+I+G
Sbjct: 167 SVHCQVLRLGFGAYAF-----VGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITG 221

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
            +    +E+A  LF  M   D++TW  MV+G  Q G    ALD F+R             
Sbjct: 222 LLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRR------------- 268

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP 362
                             M+ EG   D++TF SIL+    +  L  G QIH  +T+T   
Sbjct: 269 ------------------MRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYE 310

Query: 363 D-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
           D V + +AL+ MY++C +I  A  +F  M   +N++SW AMI G   +  + EA+  F  
Sbjct: 311 DNVFVGSALVDMYSKCRSIRLAEAVFRRMT-CRNIISWTAMIVGYGQNACSEEAVRAFSE 369

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M+   + P   T  SV+S+CA+   +EEG Q F  +    G+   I    +LV + G+ G
Sbjct: 370 MQMDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCG 428

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALL 506
            +EDA  L   M F  D+  W AL+
Sbjct: 429 SIEDAHRLFDEMSFH-DQVSWTALV 452



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 32/252 (12%)

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           TF  N +++ Y     +  A  +F +MP P+  T NA++S  A    +      F  MP+
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPE 107

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLF-IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           ++ VS+N++I G  +      +++L+   ++ E  +P R T S+++ ++S + D  LG  
Sbjct: 108 RDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHS 167

Query: 352 IHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMK-------------LL---- 393
           +H  V +        + + L+ MYA+ G I +AR +F+EM+             LL    
Sbjct: 168 VHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKM 227

Query: 394 -------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
                        ++ ++W  M+ G   +G   EAL++F+ MR+  V     TF S+L+A
Sbjct: 228 IEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTA 287

Query: 441 CAHAGLVEEGRQ 452
           C     +EEG+Q
Sbjct: 288 CGALAALEEGKQ 299



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 43/200 (21%)

Query: 333 FSSILSMSSG---IVDLHLGMQIHQMVTKTVI--PDVPINNALITMYARCGAIVEARIIF 387
           +++ILS ++G      + +   +H ++ KT +  P   + N L+T YA+ G +  AR +F
Sbjct: 12  YAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVF 71

Query: 388 EEM---------KLL---------------------KNVVSWNAMIGGCASHGFATEALE 417
           +EM          LL                     ++ VS+NA+I G +S G    +++
Sbjct: 72  DEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQ 131

Query: 418 LFKS-MRSFKVLPTYITF---ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           L+++ +R   V PT IT    I V SA +   L      H + +   +G    +   + L
Sbjct: 132 LYRALLREESVRPTRITLSAMIMVASALSDRALGHS--VHCQVLRLGFGAYAFVG--SPL 187

Query: 474 VDIVGRHGRLEDAMDLIKGM 493
           VD+  + G + DA  + + M
Sbjct: 188 VDMYAKMGLIRDARRVFQEM 207


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 195/626 (31%), Positives = 309/626 (49%), Gaps = 116/626 (18%)

Query: 23  QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEE 78
           + + V W   I GY+ +   GF  +A  L+  M       D + + +VI       +++ 
Sbjct: 82  RNNAVVWKETIIGYVKN---GFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQA 138

Query: 79  ALRLFNSMPAR----NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQ 134
             ++   + AR    +V+   A+ S + + G + NA + FDRMP RD             
Sbjct: 139 GRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRD------------- 185

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
                                   V ++N +I GY Q G+  EA  LF ++ VN  +   
Sbjct: 186 ------------------------VVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNS 221

Query: 195 NVR---------------------------FKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
           +                              + +++  N ++  YAK G+V +A ++FE+
Sbjct: 222 STLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFER 281

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTW---------------- 267
           M  RD  SWN +I GY       EA   F +M      P+++T                 
Sbjct: 282 MPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQG 341

Query: 268 -------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
                              NA+V+ YA+ GN+  A   F+RMP+KN+V+WN++I+G   +
Sbjct: 342 QQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQH 401

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPIN 367
                A+ LFI+MQ +G KPD     S+L   +  + L  G QIH    ++    +V + 
Sbjct: 402 GHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVG 461

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
             L+ +YA+CG +  A+ +FE M   ++VVSW  MI     HG   +AL LF  M+    
Sbjct: 462 TGLVDIYAKCGNVNTAQKLFERMPE-QDVVSWTTMILAYGIHGHGEDALALFSKMQETGT 520

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
              +I F ++L+AC+HAGLV++G Q+F+ M ++YG+ P++EH+A LVD++GR G L++A 
Sbjct: 521 KLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEAN 580

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
            +IK M  EPD  VWGALLGACR+H N+EL + AA+ L +++P+N+  YVLL N+YA+  
Sbjct: 581 GIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQ 640

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWV 573
           RW+D  ++R +MK   +KK  G S V
Sbjct: 641 RWEDVAKLRKMMKEKGVKKQPGCSVV 666



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 219/465 (47%), Gaps = 76/465 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG--------------SGFLE 46
           + S Y K   +  AR++FD MP+RDVVSWN +I+GY S  G              +G   
Sbjct: 161 LASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGY-SQNGQPYEALALFSEMQVNGIKP 219

Query: 47  EARYLFDIMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLF 83
            +  L  +MP                       E D +  N +++ YAK G +  A +LF
Sbjct: 220 NSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLF 279

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD 139
             MP R+V SWNA+I G+  N     A+ FF+RM  R    +S ++ +++        L+
Sbjct: 280 ERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALE 339

Query: 140 EAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
           +  ++    ++ G   +   D+V   N L+  Y + G V  A KLF+++P          
Sbjct: 340 QGQQIHGYAIRSGFESN---DVVG--NALVNMYAKCGNVNSAYKLFERMP---------- 384

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA 252
             K+N+V+WN++I  Y++ G    A  +F +M    ++ D+F+  +++    H L +E+ 
Sbjct: 385 --KKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQG 442

Query: 253 SNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             +           + +    +V  YA+ GN+  A   F+RMP++++VSW +MI     +
Sbjct: 443 KQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIH 502

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKT--VIPDV 364
              E A+ LF +MQ  G K D   F++IL+  S  G+VD   G+Q  Q +     + P +
Sbjct: 503 GHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVD--QGLQYFQCMKSDYGLAPKL 560

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
                L+ +  R G + EA  I + M L  +   W A++G C  H
Sbjct: 561 EHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIH 605



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 121/286 (42%), Gaps = 60/286 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY-------------ISSRGSGFLEE 47
           +++ Y K   +  A KLF+ MP+++VV+WN +ISGY             I  +  G   +
Sbjct: 363 LVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPD 422

Query: 48  ARYLFDIMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
           +  +  ++P                       E + V    ++  YAK G +  A +LF 
Sbjct: 423 SFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFE 482

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            MP ++VVSW  MI  +  +G   +A+  F +M       D  + +A+++     G +D+
Sbjct: 483 RMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQ 542

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +   +C     G    +  Y  L+   G+ G ++EA  +   + +  D    NV    
Sbjct: 543 GLQYF-QCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPD---ANV---- 594

Query: 201 NIVSWNSM-----IMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
               W ++     I C  + G+  +A+ +FE  L+ D   +  ++S
Sbjct: 595 ----WGALLGACRIHCNIELGE-QAAKHLFE--LDPDNAGYYVLLS 633



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F +  +  N V W   I G   +GF  +AL L+  M+   + P  + F+SV+ AC     
Sbjct: 76  FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSD 135

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           ++ GR+  + ++   G E  +    +L  +  + G LE+A  +   MP + D   W A++
Sbjct: 136 LQAGRKVHEDIIAR-GFESDVIVGTALASMYTKCGSLENARQVFDRMP-KRDVVSWNAII 193

Query: 507 G 507
            
Sbjct: 194 A 194


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 178/540 (32%), Positives = 294/540 (54%), Gaps = 24/540 (4%)

Query: 50  YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVAN 109
           Y+F    + D    N +IS Y+K G++E A R+F+SM  RN  SWN+MIS +   G + +
Sbjct: 259 YVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLND 318

Query: 110 AIEFFDRMPGRDS----ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTL 165
           A   F  +   D      + + L+SG   +G  +E   +L +   + +G +    +  ++
Sbjct: 319 AWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRM--QGEGFKPNSSSMTSV 376

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           +    + G +   ++    +  N         F  ++    S+I  Y K   + SA+ +F
Sbjct: 377 LQAISELGFLNMGKETHGYVLRN--------GFDCDVYVGTSLIDMYVKNHSLTSAQAVF 428

Query: 226 EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLE 281
           + M  R+ F+WN+++SGY      E+A  L  +M      PD +TWN M+SGYA  G  +
Sbjct: 429 DNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGK 488

Query: 282 LALDFFKRMPQ----KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
            AL    +        N+VSW ++I+G     +   ++K F QMQ EG  P+  + + +L
Sbjct: 489 EALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLL 548

Query: 338 SMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
              + +  L  G +IH +  +   I DV +  ALI MY++  ++  A  +F  ++  K +
Sbjct: 549 RACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQN-KTL 607

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
            SWN MI G A  G   EA+ +F  M+   V P  ITF ++LSAC ++GL+ EG ++F S
Sbjct: 608 ASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDS 667

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE 516
           M+ +Y I PR+EH+  +VD++GR G L++A DLI  MP +PD  +WGALLG+CR+H N++
Sbjct: 668 MITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLK 727

Query: 517 LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
            A+ AA+ L K+EP NS  Y+L+ N+Y+   RW+D + +R LM +  ++    +SW+  +
Sbjct: 728 FAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQIN 787



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/476 (23%), Positives = 202/476 (42%), Gaps = 107/476 (22%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASL 125
           Y +   +E+A ++F+ MP    + WN  I   LQ+  +   +E F +M       ++A++
Sbjct: 178 YGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATI 237

Query: 126 SALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
             ++    + G L+ A ++   + + G   D     V   N LI  Y + G++E AR++F
Sbjct: 238 VRVLQACGKMGALNAAKQIHGYVFRFGLDSD-----VSLCNPLISMYSKNGKLELARRVF 292

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNT 238
           D +              RN  SWNSMI  YA  G +  A  +F ++    ++ D  +WN 
Sbjct: 293 DSME------------NRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNC 340

Query: 239 MISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLEL------------ 282
           ++SG+      EE  N+  +M      P++ +  +++   +++G L +            
Sbjct: 341 LLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNG 400

Query: 283 -----------------------ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
                                  A   F  M  +N+ +WNS+++G      +E A++L  
Sbjct: 401 FDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLN 460

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGA 379
           QM+ EG KPD  T+                                  N +I+ YA  G 
Sbjct: 461 QMEKEGIKPDLVTW----------------------------------NGMISGYAMWGC 486

Query: 380 IVEARIIFEEMK---LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
             EA  +  + K   L  NVVSW A+I G +  G   ++L+ F  M+   V+P   +   
Sbjct: 487 GKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITC 546

Query: 437 VLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           +L ACA   L+++G++ H  S+ N  G    +    +L+D+  +   L++A  + +
Sbjct: 547 LLRACASLSLLQKGKEIHCLSIRN--GFIEDVFVATALIDMYSKSSSLKNAHKVFR 600



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 118/490 (24%), Positives = 213/490 (43%), Gaps = 56/490 (11%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN-GDVANAIEFFDRMPGR---- 120
           +IS Y   G+   A  +F     RN + WN+ +  F  + G +   +E F  + G+    
Sbjct: 72  LISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVF 131

Query: 121 DSASLSALVSG----------------LIQNG-ELDEAAR-VLVKCGSRCDGGEDLVRAY 162
           DS   S  +                  LI+ G +LD   R  L+    RC G E   + +
Sbjct: 132 DSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVF 191

Query: 163 -----------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
                      N  I+   Q  ++++  +LF K+  +  + E     +        ++  
Sbjct: 192 HEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVR--------VLQA 243

Query: 212 YAKAGDVVSAREI----FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW 267
             K G + +A++I    F   L+ D    N +IS Y     +E A  +F  M + +T +W
Sbjct: 244 CGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSW 303

Query: 268 NAMVSGYAQIGNLELALDFFKRMP----QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
           N+M+S YA +G L  A   F  +     + ++V+WN +++G   +   E  + +  +MQ 
Sbjct: 304 NSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQG 363

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVE 382
           EG KP+  + +S+L   S +  L++G + H  V +     DV +  +LI MY +  ++  
Sbjct: 364 EGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTS 423

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           A+ +F+ MK  +N+ +WN+++ G +  G   +AL L   M    + P  +T+  ++S  A
Sbjct: 424 AQAVFDNMK-NRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYA 482

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE---PDK 499
             G  +E            G+ P +  + +L+    + G   D++     M  E   P+ 
Sbjct: 483 MWGCGKEALAVLHQ-TKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNS 541

Query: 500 AVWGALLGAC 509
           A    LL AC
Sbjct: 542 ASITCLLRAC 551



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 152/336 (45%), Gaps = 39/336 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I  YVK   +  A+ +FD M  R++ +WN ++SGY      G  E+A  L + M +   
Sbjct: 411 LIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGY---SFKGMFEDALRLLNQMEKEGI 467

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMISGFLQNGDVANAIE 112
             D VTWN +ISGYA  G  +EAL + +   +     NVVSW A+ISG  Q G+  ++++
Sbjct: 468 KPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLK 527

Query: 113 FFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           FF +M       +SAS++ L+        L +     + C S  +G  + V     LI  
Sbjct: 528 FFAQMQQEGVMPNSASITCLLRACASLSLLQKGKE--IHCLSIRNGFIEDVFVATALIDM 585

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y +   ++ A K+F +I              + + SWN MIM +A  G    A  +F +M
Sbjct: 586 YSKSSSLKNAHKVFRRIQ------------NKTLASWNCMIMGFAIFGLGKEAISVFNEM 633

Query: 229 LE----RDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGN 279
            +     D  ++  ++S   +   + E    F  M       P    +  MV    + G 
Sbjct: 634 QKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGY 693

Query: 280 LELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGA 314
           L+ A D    MP K +   W +++  C  +K+ + A
Sbjct: 694 LDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFA 729


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 197/622 (31%), Positives = 326/622 (52%), Gaps = 97/622 (15%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM------PER----- 58
           ++  ARKLF+EMP+R++ +WN MI  Y  +R   ++E A  +FD M      P+      
Sbjct: 124 DLCYARKLFEEMPERNLTAWNTMILAY--ARVDDYME-AWGIFDRMLKIGVCPDNFTFAS 180

Query: 59  ----------------------------DCVTWNTVISGYAKTGEMEEALRLFNSMPARN 90
                                       D    N +I  YAK  + E  L++F+ M  RN
Sbjct: 181 ALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERN 240

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGR------DSASLSALVSGLIQNGELDEAARV 144
            V+WN++IS   Q G   +A+  F RM         D  + + L++ L  N   D   R 
Sbjct: 241 QVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLT-LCANQRNDNQGRQ 299

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
           +     R +  ++++     L+  Y + GR+  A+++F+++             +RN  S
Sbjct: 300 IHAHLIRANITKNII-VETELVHMYSECGRLNYAKEIFNRMA------------ERNAYS 346

Query: 205 WNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDME---EASNLFV 257
           WNSMI  Y + G+   A  +F+QM    ++ D FS ++M+S  + + D +   E  N  V
Sbjct: 347 WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIV 406

Query: 258 KMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK--NLVSWNSMIAGCETNKDYEGA 314
           +     + +    +V  YA+ G+++ A   + +  +K  N   WNS++AG   NK  +  
Sbjct: 407 RNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAG-YANKGLK-- 463

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMY 374
                          + +F+  L M      L   ++   +   T++  + +  AL+ MY
Sbjct: 464 ---------------KESFNHFLEM------LESDIEYDVLTMVTIVNLLVLETALVDMY 502

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           ++CGAI +AR +F+ M   KN+VSWNAMI G + HG + EAL L++ M    + P  +TF
Sbjct: 503 SKCGAITKARTVFDNMNG-KNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTF 561

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           +++LSAC+H GLVEEG + F SM  +Y IE + EH+  +VD++GR GRLEDA + ++ MP
Sbjct: 562 LAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMP 621

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANE 554
            EP+ + WGALLGACRVH ++++ ++AA+ L +++P+N  PYV++ N+YA  GRW +  +
Sbjct: 622 IEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVED 681

Query: 555 VRLLMKSNNIKKPTGYSWVDFS 576
           +R +MK   +KK  G SW++ +
Sbjct: 682 IRQMMKMKGVKKDPGVSWIEIN 703



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 169/347 (48%), Gaps = 48/347 (13%)

Query: 208 MIMCYAKAG---DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH--- 261
           ++M YA++G   D+  AR++FE+M ER+  +WNTMI  Y  V D  EA  +F +M     
Sbjct: 112 ILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGV 171

Query: 262 -PDTLTW-----------------------------------NAMVSGYAQIGNLELALD 285
            PD  T+                                   NA++  YA+  + E  L 
Sbjct: 172 CPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLK 231

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ--VEGEKPDRHTFSSILSMSSGI 343
            F  M ++N V+WNS+I+       +  A+ LF++MQ   +G +PD+ TF+++L++ +  
Sbjct: 232 VFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQ 291

Query: 344 VDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
            + + G QIH  ++   +  ++ +   L+ MY+ CG +  A+ IF  M   +N  SWN+M
Sbjct: 292 RNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMA-ERNAYSWNSM 350

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I G   +G   EAL LFK M+   + P   +  S+LS+C      ++GR+    +V    
Sbjct: 351 IEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTM 410

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLI-KGMPFEPDKAVWGALLGA 508
            E  I     LVD+  + G ++ A  +  + +  + + A+W ++L  
Sbjct: 411 EEEGILQVV-LVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAG 456



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 150/344 (43%), Gaps = 59/344 (17%)

Query: 261 HPDTLTWNAMVSGYAQIGNLE---LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           +PD      ++  YA+ G L+    A   F+ MP++NL +WN+MI       DY  A  +
Sbjct: 103 NPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGI 162

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYAR 376
           F +M   G  PD  TF+S L +   +     G Q+H +++      D  + NALI MYA+
Sbjct: 163 FDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAK 222

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK--VLPTYITF 434
           C        +F+EM   +N V+WN++I   A  G   +AL LF  M+  +  + P   TF
Sbjct: 223 CDDEESCLKVFDEMG-ERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTF 281

Query: 435 ISVLSACA-----------HAGLV-------------------EEGRQHFKSMVNEYGIE 464
            ++L+ CA           HA L+                   E GR ++   +     E
Sbjct: 282 TTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAE 341

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPF---EPDKAVWGALLGAC----------RV 511
                + S+++   ++G  ++A+ L K M     +PD     ++L +C           +
Sbjct: 342 RNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGREL 401

Query: 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           HN +    +  E +++         V+L +MYA  G  D A +V
Sbjct: 402 HNFIVRNTMEEEGILQ---------VVLVDMYAKCGSMDYAWKV 436



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 109/281 (38%), Gaps = 48/281 (17%)

Query: 333 FSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVE---ARIIFE 388
           +SS++           G  IH QM++    PD  +   ++ +YAR G + +   AR +FE
Sbjct: 74  YSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
           EM   +N+ +WN MI   A      EA  +F  M    V P   TF S L  C      +
Sbjct: 134 EMP-ERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRD 192

Query: 449 EGRQHFKSMV-------------------------------NEYGIEPRIEHFASLVDIV 477
            G+Q    ++                               +E G   ++  + S++   
Sbjct: 193 GGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVT-WNSIISAE 251

Query: 478 GRHGRLEDAMDLIKGMP-----FEPDKAVWGALLGAC-RVHNNVELAQVAAEALMKVEPE 531
            + G   DA+ L   M       +PD+  +  LL  C    N+ +  Q+ A  +     +
Sbjct: 252 AQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITK 311

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
           N      L +MY++ GR + A E+      N + +   YSW
Sbjct: 312 NIIVETELVHMYSECGRLNYAKEI-----FNRMAERNAYSW 347


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 186/522 (35%), Positives = 297/522 (56%), Gaps = 31/522 (5%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR------DSA 123
           Y K     +A R+F+ MP+R+ V+WNA+++G+ +NG  ++A+E   RM G       DS 
Sbjct: 61  YFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSV 120

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           +L +++        L  A R +     R  G ++LV     ++  Y + G VE AR +FD
Sbjct: 121 TLVSVLPACADARAL-HACREVHAFALRA-GLDELVNVSTAVLDAYCKCGAVEAARAVFD 178

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER--DTFSWNTMIS 241
            +PV            RN VSWN+MI  YA  G+   A  +F +M++   D    + + +
Sbjct: 179 CMPV------------RNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAA 226

Query: 242 ----GYIHVLD-MEEASNLFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMP-QKN 294
               G +  LD +     L V++     ++  NA+++ YA+    +LA   F  +  +K 
Sbjct: 227 LQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKT 286

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
            +SWN+MI G   N+  E A +LF +MQ+E  +PD  T  S++   + I D      IH 
Sbjct: 287 RISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHG 346

Query: 355 M-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
             +   +  DV +  ALI MY++CG +  AR +F+  +  ++V++WNAMI G  SHGF  
Sbjct: 347 YSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARD-RHVITWNAMIHGYGSHGFGQ 405

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
            A+ELF+ M+    LP   TF+SVL+AC+HAGLV+EG+++F SM  +YG+EP +EH+ ++
Sbjct: 406 AAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTM 465

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           VD++GR G+L++A   IK MP EP  +V+GA+LGAC++H NVELA+ +A+ + ++ PE  
Sbjct: 466 VDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEG 525

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
             +VLL N+YA+   W D   VR  M+   ++K  G+S +  
Sbjct: 526 VYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQL 567



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 209/462 (45%), Gaps = 75/462 (16%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGY---------------ISSRGSGFLEEAR 49
           Y K R  A AR++FD MP RD V+WN +++GY               +     G   ++ 
Sbjct: 61  YFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSV 120

Query: 50  YLFDIMPE----------------------RDCVTWNT-VISGYAKTGEMEEALRLFNSM 86
            L  ++P                        + V  +T V+  Y K G +E A  +F+ M
Sbjct: 121 TLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCM 180

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRD--SASLSALVSGLIQNGELDEAA 142
           P RN VSWNAMI G+  NG+   A+  F RM   G D   AS+ A +    + G LDE  
Sbjct: 181 PVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVR 240

Query: 143 RV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           RV   LV+ G   +     V   N LI  Y +  R + A ++F+++        GN   K
Sbjct: 241 RVHELLVRVGLSSN-----VSVTNALITTYAKCKRADLAAQVFNEL--------GN---K 284

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNL 255
           +  +SWN+MI+ + +      A  +F +M    +  D+F+  ++I     + D  +A  +
Sbjct: 285 KTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWI 344

Query: 256 F-VKMPH---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
               + H    D     A++  Y++ G + +A   F     +++++WN+MI G  ++   
Sbjct: 345 HGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFG 404

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKT--VIPDVPIN 367
           + A++LF +M+  G  P+  TF S+L+  S  G+VD   G +    + K   + P +   
Sbjct: 405 QAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVD--EGQKYFASMKKDYGLEPGMEHY 462

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
             ++ +  R G + EA    + M +   +  + AM+G C  H
Sbjct: 463 GTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLH 504



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 158/366 (43%), Gaps = 67/366 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS------------------ 42
           ++  Y K   +  AR +FD MP R+ VSWN MI GY  +  +                  
Sbjct: 160 VLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVT 219

Query: 43  --------------GFLEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEALRLFN 84
                         G+L+E R + +++       +    N +I+ YAK    + A ++FN
Sbjct: 220 DASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFN 279

Query: 85  SMPARNV-VSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD 139
            +  +   +SWNAMI GF QN    +A   F RM       DS +L +++  +    +  
Sbjct: 280 ELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPL 339

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           + AR +     R    +D V     LI  Y + GRV  AR+LFD                
Sbjct: 340 Q-ARWIHGYSIRHQLDQD-VYVLTALIDMYSKCGRVSIARRLFDSAR------------D 385

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM-----LERDTFSWNTMISGYIHVLDMEEASN 254
           R++++WN+MI  Y   G   +A E+FE+M     L  +T ++ ++++   H   ++E   
Sbjct: 386 RHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNET-TFLSVLAACSHAGLVDEGQK 444

Query: 255 LFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGCETN 308
            F  M       P    +  MV    + G L+ A  F K MP +  +S + +M+  C+ +
Sbjct: 445 YFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLH 504

Query: 309 KDYEGA 314
           K+ E A
Sbjct: 505 KNVELA 510



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 89/182 (48%), Gaps = 6/182 (3%)

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARII 386
           P   TF+++L + +   DL  G  +H Q+  + +  +   + AL  MY +C    +AR +
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK--VLPTYITFISVLSACAHA 444
           F+ M   ++ V+WNA++ G A +G  + A+E    M+  +    P  +T +SVL ACA A
Sbjct: 74  FDRMP-SRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADA 132

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
             +   R+   +     G++  +    +++D   + G +E A  +   MP   +   W A
Sbjct: 133 RALHACRE-VHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVR-NSVSWNA 190

Query: 505 LL 506
           ++
Sbjct: 191 MI 192



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 16/162 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K   ++ AR+LFD    R V++WN MI GY S    GF + A  LF+ M     
Sbjct: 363 LIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGS---HGFGQAAVELFEEMKGTGS 419

Query: 61  V----TWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
           +    T+ +V++  +  G ++E  + F SM         +  +  M+    + G +  A 
Sbjct: 420 LPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAW 479

Query: 112 EFFDRMPGRDSASLSALVSG---LIQNGEL-DEAARVLVKCG 149
            F   MP     S+   + G   L +N EL +E+A+++ + G
Sbjct: 480 SFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELG 521


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 184/536 (34%), Positives = 299/536 (55%), Gaps = 41/536 (7%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D V  ++ +  YAK    E+A++LF+ MP R+V SWN +IS + Q+G    A+E F+ M 
Sbjct: 140 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 199

Query: 119 ----GRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
                 DS +L+ ++S   +  +L+    +   LV+ G   DG        + L+  YG+
Sbjct: 200 VSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDG-----FVSSALVDMYGK 254

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G +E A+++F++I             ++N+VSWNSMI  Y+  GD  S  E+F +M E 
Sbjct: 255 CGCLEMAKEVFEQIQ------------RKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEE 302

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFV-KMPH---------PDTLTWNAMVSGYAQIGNLE 281
                 T +S  +  +    + NL + K  H          D    ++++  Y + GN+ 
Sbjct: 303 GIRPTLTTLSSIL--MACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIG 360

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A + F+ MP+ N+VSWN MI+G      Y  A+ +F  M+  G KPD  TF+S+L   S
Sbjct: 361 SAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACS 420

Query: 342 GIVDLHLGMQIHQMV--TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
            +  L  G +IH  +  +K  I +V +  AL+ MYA+CGA+ EA  IF ++   ++ VSW
Sbjct: 421 QLAVLEKGKEIHNFIIESKLEINEV-VMGALLDMYAKCGAVDEALHIFNQLPE-RDFVSW 478

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
            +MI    SHG A EAL+LF+ M+     P  +TF+++LSAC+HAGLV+EG  +F  M+ 
Sbjct: 479 TSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIA 538

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP-FEPDKAVWGALLGACRVHNNVELA 518
           EYG +P +EH++ L+D++GR GRL +A ++++  P    D  +   L  AC +H  ++L 
Sbjct: 539 EYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLG 598

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +     L++ +P++ + Y++L NMYA V +WD+  +VRL +K   +KK  G SW++
Sbjct: 599 EQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIE 654



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 141/464 (30%), Positives = 215/464 (46%), Gaps = 94/464 (20%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  ++V  +S +  YAK      A ++F++M ERD  SWN +IS Y      E+A  LF 
Sbjct: 137 FAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFE 196

Query: 258 KMP----HPDTLTW-----------------------------------NAMVSGYAQIG 278
           +M      PD++T                                    +A+V  Y + G
Sbjct: 197 EMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCG 256

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
            LE+A + F+++ +KN+VSWNSMIAG     D +  I+LF +M  EG +P   T SSIL 
Sbjct: 257 CLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILM 316

Query: 339 MSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
             S  V+L LG  IH  + +  V  D+ +N++LI +Y +CG I  A  +F+ M    NVV
Sbjct: 317 ACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP-KTNVV 375

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWN MI G    G   EAL +F  MR   V P  ITF SVL AC+   ++E+G++     
Sbjct: 376 SWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKE----- 430

Query: 458 VNEYGIEPRIE----HFASLVDIVGRHGRLEDAMDLIKGMP------------------- 494
           ++ + IE ++E       +L+D+  + G +++A+ +   +P                   
Sbjct: 431 IHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQ 490

Query: 495 -FE--------------PDKAVWGALLGACRVHNNVE-----LAQVAAEALMKVEPENST 534
            FE              PDK  + A+L AC     V+       Q+ AE   K   E+  
Sbjct: 491 AFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEH-- 548

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFSPC 578
            Y  L ++   VGR  +A E+  L ++ +I++  G     FS C
Sbjct: 549 -YSCLIDLLGRVGRLREAYEI--LQRTPDIREDVGLLSTLFSAC 589



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 138/487 (28%), Positives = 200/487 (41%), Gaps = 127/487 (26%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP----ERDC 60
           Y K      A KLFDEMP+RDV SWN +IS Y      G  E+A  LF+ M     + D 
Sbjct: 151 YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQ---DGQPEKALELFEEMKVSGFKPDS 207

Query: 61  VTWNTVISG-----------------------------------YAKTGEMEEALRLFNS 85
           VT  TVIS                                    Y K G +E A  +F  
Sbjct: 208 VTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQ 267

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
           +  +NVVSWN+MI+G+   GD  + IE F RM   D   +   ++ L         + +L
Sbjct: 268 IQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM---DEEGIRPTLTTL---------SSIL 315

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
           + C    +            I GY  R RVE                        +I   
Sbjct: 316 MACSRSVN------LQLGKFIHGYIIRNRVEA-----------------------DIFVN 346

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----H 261
           +S+I  Y K G++ SA  +F+ M + +  SWN MISGY+ V    EA  +F  M      
Sbjct: 347 SSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVK 406

Query: 262 PDTLTWN-----------------------------------AMVSGYAQIGNLELALDF 286
           PD +T+                                    A++  YA+ G ++ AL  
Sbjct: 407 PDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHI 466

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIV 344
           F ++P+++ VSW SMIA   ++     A+KLF +MQ    KPD+ TF +ILS  S  G+V
Sbjct: 467 FNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLV 526

Query: 345 DLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEM-KLLKNVVSWNAM 402
           D       +QM+ +    P V   + LI +  R G + EA  I +    + ++V   + +
Sbjct: 527 D-EGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTL 585

Query: 403 IGGCASH 409
              C  H
Sbjct: 586 FSACHLH 592



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 163/363 (44%), Gaps = 71/363 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           ++  Y K   +  A+++F+++ +++VVSWN MI+GY                        
Sbjct: 248 LVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPT 307

Query: 37  ISSRGSGFLEEAR------------YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           +++  S  +  +R            Y+     E D    +++I  Y K G +  A  +F 
Sbjct: 308 LTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQ 367

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
           +MP  NVVSWN MISG+++ G    A+  F  M       D+ + ++++    Q   L++
Sbjct: 368 NMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEK 427

Query: 141 AARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
              +   +++  S+ +  E ++ A   L+  Y + G V+EA  +F+++P           
Sbjct: 428 GKEIHNFIIE--SKLEINEVVMGA---LLDMYAKCGAVDEALHIFNQLP----------- 471

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEEAS 253
            +R+ VSW SMI  Y   G    A ++FE+M + D      ++  ++S   H   ++E  
Sbjct: 472 -ERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGC 530

Query: 254 NLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP--QKNLVSWNSMIAGCE 306
             F +M       P    ++ ++    ++G L  A +  +R P  ++++   +++ + C 
Sbjct: 531 YYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACH 590

Query: 307 TNK 309
            +K
Sbjct: 591 LHK 593



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 108/201 (53%), Gaps = 6/201 (2%)

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           ++  WN ++A C  N  +   +++F ++      KPD  T+ S+L   SG+  +  G  +
Sbjct: 69  DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 128

Query: 353 HQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H  V K+    DV + ++ + MYA+C    +A  +F+EM   ++V SWN +I      G 
Sbjct: 129 HTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMP-ERDVASWNNVISCYYQDGQ 187

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHF 470
             +ALELF+ M+     P  +T  +V+S+CA    +E G++ H + + + + ++  +   
Sbjct: 188 PEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVS-- 245

Query: 471 ASLVDIVGRHGRLEDAMDLIK 491
           ++LVD+ G+ G LE A ++ +
Sbjct: 246 SALVDMYGKCGCLEMAKEVFE 266



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 7/180 (3%)

Query: 334 SSILSMSSGIVD---LHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEE 389
           + +LS+    +D   L  G  IHQ +V+  +  ++ +  +LI +Y  C     A+++F+ 
Sbjct: 4   TKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQT 63

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL-PTYITFISVLSACAHAGLVE 448
           ++   ++  WN ++  C  +    E LE+F  +  F  L P   T+ SVL AC+  G V 
Sbjct: 64  IENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVG 123

Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
            G+    + V + G    +   +S V +  +    EDA+ L   MP E D A W  ++  
Sbjct: 124 YGKM-VHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMP-ERDVASWNNVISC 181


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 189/532 (35%), Positives = 298/532 (56%), Gaps = 37/532 (6%)

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--- 118
           T N +ISGYAK GE+  A ++F     R+ VSWN MI+GF+  G+   A+EF   M    
Sbjct: 36  TANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYG 95

Query: 119 -GRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
              D  S  +++ G+   G ++   +V   +VK G      E  V A + L+  Y +  R
Sbjct: 96  FAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGY-----EGNVFAGSALLDMYAKCER 150

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM------ 228
           VE+A ++F  I +            RN V+WN++I  YA+ GD  +A  + + M      
Sbjct: 151 VEDAFEVFKSINI------------RNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVE 198

Query: 229 LERDTFSWNTMISGYI--HVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
           ++  TF+    +      H L  +  + +       DT   NA+++ Y++ G++E A   
Sbjct: 199 IDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERV 258

Query: 287 FK-RMPQKNL--VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
           F   +  ++L  VSWNS++ G   +   E A+K F  M+ +    D + FS++L   S +
Sbjct: 259 FDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDL 318

Query: 344 VDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             L LG Q+H +V K+   P+  + ++LI MY++CG I +AR  F+      + ++WN++
Sbjct: 319 ATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPK-DSSIAWNSL 377

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I G A HG    AL+LF  M+  +V   +ITF++VL+AC+H GLVEEG    KSM ++YG
Sbjct: 378 IFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYG 437

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           I PR+EH+A ++D++GR GRL++A  LI+ MPFEPD  VW  LLGACR   ++ELA   A
Sbjct: 438 IPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVA 497

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             L+++EPE    YVLL +M+  + RW++   ++ LMK   +KK  G+SW++
Sbjct: 498 SHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIE 549



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 179/361 (49%), Gaps = 46/361 (12%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA-------- 252
           +I + N++I  YAK G++  A ++F +  +RD  SWNTMI+G++++ + E A        
Sbjct: 33  SIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMK 92

Query: 253 ------------------------------SNLFVKMPHP-DTLTWNAMVSGYAQIGNLE 281
                                          ++ VKM +  +    +A++  YA+   +E
Sbjct: 93  RYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVE 152

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A + FK +  +N V+WN++I+G     D   A  L   M++EG + D  TF+ +L++  
Sbjct: 153 DAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLD 212

Query: 342 GIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFE---EMKLLKNVV 397
                 L  Q+H ++V   +  D  + NA+IT Y+ CG+I +A  +F+   E + L + V
Sbjct: 213 DPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDH-V 271

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWN+++ G +  G + +AL+ F++MRS  V+  +  F +VL +C+    ++ G+Q    +
Sbjct: 272 SWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQ-VHVL 330

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517
           V + G EP     +SL+ +  + G +EDA       P +   A W +L+     H   ++
Sbjct: 331 VLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIA-WNSLIFGYAQHGRGKI 389

Query: 518 A 518
           A
Sbjct: 390 A 390



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 199/463 (42%), Gaps = 67/463 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI-------------SSRGSGFLEE 47
           +ISGY K  E+  A K+F E  QRD VSWN MI+G++             S +  GF  +
Sbjct: 40  IISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVD 99

Query: 48  ARYLFDIMPERDCVTW-----------------------NTVISGYAKTGEMEEALRLFN 84
                 I+    CV +                       + ++  YAK   +E+A  +F 
Sbjct: 100 GYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFK 159

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
           S+  RN V+WNA+ISG+ Q GD   A    D M       D  + + L++ L        
Sbjct: 160 SINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKL 219

Query: 141 AARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
             +V   +VK G   D         N +I  Y + G +E+A ++FD      D       
Sbjct: 220 TTQVHAKIVKHGLASD-----TTVCNAIITAYSECGSIEDAERVFDGAIETRDLDH---- 270

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEAS 253
                VSWNS++  ++++G    A + FE M  +    D ++++ ++     +  ++   
Sbjct: 271 -----VSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQ 325

Query: 254 NLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            + V +      P+    ++++  Y++ G +E A   F   P+ + ++WNS+I G   + 
Sbjct: 326 QVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHG 385

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPIN 367
             + A+ LF  M+    K D  TF ++L+  S I  +  G    + +     + P +   
Sbjct: 386 RGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHY 445

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
             +I +  R G + EA+ + E M    + + W  ++G C + G
Sbjct: 446 ACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCG 488



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 153/360 (42%), Gaps = 72/360 (20%)

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           ++ N +ISGY    ++  AS +F +    D ++WN M++G+  +GN E AL+F K M   
Sbjct: 35  YTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSM--- 91

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
                          K Y  A+             D ++F SIL   + +  + +G Q+H
Sbjct: 92  ---------------KRYGFAV-------------DGYSFGSILKGVACVGYVEVGQQVH 123

Query: 354 QMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
            M+ K     +V   +AL+ MYA+C  + +A  +F+ +  ++N V+WNA+I G A  G  
Sbjct: 124 SMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSIN-IRNSVTWNALISGYAQVGDR 182

Query: 413 TEALELFKSMRSFKVLPTYITFISV-----------LSACAHAGLVEEGRQHFKSMVN-- 459
             A  L   M    V     TF  +           L+   HA +V+ G     ++ N  
Sbjct: 183 GTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAI 242

Query: 460 -----------------EYGIEPR-IEHFA--SLVDIVGRHGRLEDAMDLIKGMPFE--- 496
                            +  IE R ++H +  S++    + G  EDA+   + M  +   
Sbjct: 243 ITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVV 302

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENSTPYVLLYNMYADVGRWDDANE 554
            D   + A+L +C     ++L Q     ++K   EP       L++ MY+  G  +DA +
Sbjct: 303 IDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIF-MYSKCGVIEDARK 361



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 155/355 (43%), Gaps = 60/355 (16%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPER---DCVTWNTVISGYAKTGEMEEALR 81
           D    N +I+ Y      G +E+A  +FD   E    D V+WN++++G++++G  E+AL+
Sbjct: 235 DTTVCNAIITAYSEC---GSIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALK 291

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
            F +M ++ VV  +   S  L                 R  + L+ L        +L + 
Sbjct: 292 FFENMRSQYVVIDHYAFSAVL-----------------RSCSDLATL--------QLGQQ 326

Query: 142 ARVLV-KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             VLV K G   +G        ++LI  Y + G +E+ARK FD  P            K 
Sbjct: 327 VHVLVLKSGFEPNG-----FVASSLIFMYSKCGVIEDARKSFDATP------------KD 369

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLF 256
           + ++WNS+I  YA+ G    A ++F  M +R    D  ++  +++   H+  +EE  +  
Sbjct: 370 SSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFL 429

Query: 257 VKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKD 310
             M       P    +  M+    + G L+ A    + MP + + + W +++  C T  D
Sbjct: 430 KSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGD 489

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP 365
            E A ++   + +E E  +  T+  + SM   +   +    I +++ +  +  VP
Sbjct: 490 IELASQVASHL-LELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVP 543



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 15/155 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I  Y K   +  ARK FD  P+   ++WN +I GY +  G G +  A  LF +M +R  
Sbjct: 346 LIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGY-AQHGRGKI--ALDLFFLMKDRRV 402

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSM------PARNVVSWNAMISGFLQNGDVANA 110
             D +T+  V++  +  G +EE      SM      P R +  +  MI    + G +  A
Sbjct: 403 KLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPR-MEHYACMIDLLGRAGRLDEA 461

Query: 111 IEFFDRMPGR-DSASLSALVSGLIQNGELDEAARV 144
               + MP   D+     L+      G+++ A++V
Sbjct: 462 KALIEAMPFEPDAMVWKTLLGACRTCGDIELASQV 496


>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 207/649 (31%), Positives = 313/649 (48%), Gaps = 121/649 (18%)

Query: 32  MISGYISSRGSGFLEEAR----YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP 87
           ++S   S     F+ + R     +F +    +    N++I+ YAK G+++ A  LF+   
Sbjct: 56  LVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLFDGFA 115

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV--- 144
             + VS N M+SG+++NG + NA + FD MP +   S + ++ G +QNG   EA  V   
Sbjct: 116 TLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKD 175

Query: 145 LVKCG------------SRCDG-GE-----------------DLVRAYNTLIVGYGQRGR 174
           +  CG            S C   GE                  LV     L+  Y     
Sbjct: 176 MRSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSG 235

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
           V EAR+LFD++P            +RN+V+WN M+  YAK G V  ARE+F+ + ++D  
Sbjct: 236 VREARRLFDEMP------------ERNLVTWNVMLNGYAKTGLVDEARELFDGICDKDVI 283

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSG----------------- 273
           SW TMI GYI    + EA  ++  M      P+ +    +VS                  
Sbjct: 284 SWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDGWQLHGTV 343

Query: 274 ------------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
                             YA  G ++LA   F+   + +L SWN++ AG   N   + A+
Sbjct: 344 VKRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHAL 403

Query: 316 KLFIQMQVE-------------------------------GEKPDRHTFSSILSMSSGIV 344
           K F +M V                                G KP+  T  S+ S  + + 
Sbjct: 404 KTFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSAIATLG 463

Query: 345 DLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMK-LLKNVVSWNAM 402
            L  G   H+ +    IP +  +  ALI MYA+CG+I  A   F +++  + +V  WNA+
Sbjct: 464 TLQEGKLAHEYMRSESIPFNDNLRAALIDMYAKCGSINSALQFFNQIRDEVSSVSPWNAI 523

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I G ASHG A+  LE+F  M+ F + P  ITFI VLSAC HAGLVE G++ FK+M + Y 
Sbjct: 524 ICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVLSACCHAGLVESGKRIFKTMKSAYN 583

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           +EP I+H+  ++DI+GR G LE+A ++I+ MP E D  +WG LL ACR H NV + + AA
Sbjct: 584 VEPDIKHYGCMIDILGRAGLLEEAEEMIRSMPMEADIVIWGTLLAACRTHGNVNIGERAA 643

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           E L ++ P +    VLL N+YA+ G+W++ + VR +M+   + +  GYS
Sbjct: 644 ENLARLAPSHGGGKVLLSNIYANAGKWEEVSFVRSVMQGQTMDREPGYS 692


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 201/608 (33%), Positives = 319/608 (52%), Gaps = 85/608 (13%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G L +AR LF+ MP ++ V+ N +ISGY K+G + EA +LF+ M  R  V+W  +I G+
Sbjct: 60  NGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGY 119

Query: 102 LQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNG-----ELDEAARVLVKCG--S 150
            Q      A E F +M       D  +   L+SG   NG     ++ +    ++K G  S
Sbjct: 120 SQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGC--NGHEMGNQITQVQTQIIKLGYDS 177

Query: 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP---------VNC-DRGEGNVRFKR 200
           R   G       NTL+  Y +  R++ A +LF ++P         V C + G  ++   +
Sbjct: 178 RLIVG-------NTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQ 230

Query: 201 NIVSW-------------NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL 247
            I S+             N+++  Y+K   V+ AR++F++M E+D  S+N +ISGY    
Sbjct: 231 QIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDG 290

Query: 248 DMEEASNLFVKMPH-----------------PDTLTW----------------------N 268
             + A +LF ++                    +TL W                      N
Sbjct: 291 KHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGN 350

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           ++V  YA+ G  E A   F  +  ++ V W +MI+       YE  ++LF +M+      
Sbjct: 351 SLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIA 410

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIF 387
           D+ TF+S+L  S+ I  L LG Q+H  + K+  + +V   +AL+ +YA+CG+I +A   F
Sbjct: 411 DQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTF 470

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
           +EM   +N+VSWNAMI   A +G A   L+ FK M    + P  ++F+ VLSAC+H+GLV
Sbjct: 471 QEMPD-RNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLV 529

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           EEG  HF SM   Y ++PR EH+AS+VD++ R GR  +A  L+  MP +PD+ +W ++L 
Sbjct: 530 EEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLN 589

Query: 508 ACRVHNNVELAQVAAEALMKVEP-ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
           ACR+H N ELA+ AA+ L  +E   ++ PYV + N+YA  G+W++ ++V   M+   +KK
Sbjct: 590 ACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKK 649

Query: 567 PTGYSWVD 574
              YSWV+
Sbjct: 650 LPAYSWVE 657



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 167/334 (50%), Gaps = 41/334 (12%)

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMV 271
           + K G++  AR++FE+M  ++T S N MISGY+   ++ EA  LF  M     +TW  ++
Sbjct: 57  FLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILI 116

Query: 272 SGYAQIGNLELALDFFKRM----PQKNLVSWNSMIAGCETNK------------------ 309
            GY+Q+   + A + F +M     + + V++ ++++GC  ++                  
Sbjct: 117 GGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYD 176

Query: 310 -----------DYEGAIKLFIQMQVEGEKP--DRHTFSSILSMSSGIVDLHLGMQIHQMV 356
                       Y  + +L +  Q+  E P  D  TF+++L  + G+ D+ LG QIH  V
Sbjct: 177 SRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFV 236

Query: 357 TKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            KT  + +V ++NAL+  Y++  ++++AR +F+EM   ++ VS+N +I G A  G    A
Sbjct: 237 IKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP-EQDGVSYNVIISGYAWDGKHKYA 295

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLV 474
            +LF+ ++          F ++LS  ++    E GRQ H +++V     E  + +  SLV
Sbjct: 296 FDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGN--SLV 353

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           D+  + G+ E+A  +   +        W A++ A
Sbjct: 354 DMYAKCGKFEEAEMIFTNLTHR-SAVPWTAMISA 386



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 165/346 (47%), Gaps = 26/346 (7%)

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
           + AR I +   + DT   N  +  ++   ++ +A  LF KMPH +T++ N M+SGY + G
Sbjct: 34  IDAR-IVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSG 92

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
           NL  A   F  M ++  V+W  +I G      ++ A +LF+QMQ  G +PD  TF ++LS
Sbjct: 93  NLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLS 152

Query: 339 MSSGIVDLHLGMQIHQMVTKTVI----PDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
             +G     +G QI Q+ T+ +       + + N L+  Y +   +  A  +F+EM  + 
Sbjct: 153 GCNG---HEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEID 209

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI--TFIS--VLSACAHAGLVEEG 450
           +  ++ A++  CA+ G   + + L + + SF +   ++   F+S  +L   +    V + 
Sbjct: 210 S-FTFAAVL--CANIGL--DDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDA 264

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLG 507
           R+ F  M  + G+   +     ++      G+ + A DL + +    F+  +  +  +L 
Sbjct: 265 RKLFDEMPEQDGVSYNV-----IISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLS 319

Query: 508 ACRVHNNVELA-QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
                 + E+  Q+ A+ ++            L +MYA  G++++A
Sbjct: 320 IASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEA 365


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 203/629 (32%), Positives = 327/629 (51%), Gaps = 76/629 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSGF--- 44
           +I+ Y K  +M  A+K+FD + +R++V WN M+ GY  +             RG GF   
Sbjct: 390 LINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPD 449

Query: 45  ----------------LEEARYLFDIMP----ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                           LE  R L   +     E +    NT++  YAK G +EEA + F 
Sbjct: 450 EFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFE 509

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDE 140
            +  R+ VSWNA+I G++Q  D   A   F RM       D  SL++++SG      L++
Sbjct: 510 FIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQ 569

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +V   C     G +  + A ++LI  Y + G +E AR +F  +P             R
Sbjct: 570 GEQV--HCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMP------------SR 615

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM---------------LERDTFSWNTMISGYIH 245
           ++VS N++I  YA+  D+V A ++F++M               L+  T  +   +   IH
Sbjct: 616 SVVSMNAIIAGYAQ-NDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIH 674

Query: 246 VLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
            L +++   L+      D L  + +V         +  + F +    K+ + W ++I+G 
Sbjct: 675 CL-IQKRGLLY----DGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGH 729

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDV 364
             N   E A++L+ +M     +PD+ TF+S+L   S +  L  G  IH ++    +  D 
Sbjct: 730 TQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDE 789

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
              +A++ MYA+CG +  +  +FEEM    +V+SWN+MI G A +G+A  AL++F  M+ 
Sbjct: 790 LTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKH 849

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
            ++ P  +TF+ VL+AC+HAG V EGR+ F  MV+ Y I PR++H A ++D++GR G L+
Sbjct: 850 TRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLK 909

Query: 485 DAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
           +A + I  + FEP+  +W  LLGACR+H +    + AAE L+++EPENS+PYVLL N+YA
Sbjct: 910 EAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYA 969

Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
             G WD+ N VR  M+   ++K  G SW+
Sbjct: 970 ASGNWDEVNSVRRAMREKGLRKLPGCSWI 998



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 175/616 (28%), Positives = 278/616 (45%), Gaps = 120/616 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I  Y K   +  ARK+FD +   D VSW  MI+GY+     G  EEA  +F+ M +   
Sbjct: 223 LIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQ---VGLPEEALKVFEDMQKLGL 279

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
             D V + TVI+     G +++A  LF  MP  NVV+WN MISG ++ G    AI+FF  
Sbjct: 280 VPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKN 339

Query: 117 M--PGRDS------------ASLSALVSGLIQNGE-----LDEAARV---LVKCGSRCDG 154
           M   G  S            ASL AL  GL+ + +     L+    V   L+   ++C+ 
Sbjct: 340 MWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEK 399

Query: 155 GEDLVRAY-----------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG--------- 194
            E   + +           N ++ GY Q G   +  KLF ++     RG G         
Sbjct: 400 MEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEM-----RGCGFWPDEFTYT 454

Query: 195 -----------------------NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
                                     F+ N+   N+++  YAK G +  AR+ FE +  R
Sbjct: 455 SILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNR 514

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSG-------------- 273
           D  SWN +I GY+   D +EA N+F +M      PD ++  +++SG              
Sbjct: 515 DNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVH 574

Query: 274 ---------------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
                                Y + G +E A   F  MP +++VS N++IAG   N D  
Sbjct: 575 CFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQN-DLV 633

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVP-INNAL 370
            AI LF +MQ EG  P   TF+S+L   +G   L+LG QIH ++ K  ++ D   +  +L
Sbjct: 634 EAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSL 693

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           + MY       +A I+F E +  K+ + W A+I G   +G + EAL+L++ M      P 
Sbjct: 694 LVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPD 753

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
             TF SVL AC+    + +GR    S++   G++      +++VD+  + G ++ ++ + 
Sbjct: 754 QATFASVLRACSILASLGDGRM-IHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVF 812

Query: 491 KGMPFEPDKAVWGALL 506
           + M  + D   W +++
Sbjct: 813 EEMGSKNDVISWNSMI 828



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 239/503 (47%), Gaps = 69/503 (13%)

Query: 13  KARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAK 72
           K R  FDE PQR   +     + +  +   GF  + R              + ++  YAK
Sbjct: 81  KIRHPFDETPQRLAQASRTSKTIHAQTLKFGFGSKGRL------------GSAIVDLYAK 128

Query: 73  TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSAL 128
            G +E A + FN +  R++++WN+++S + + G +   I  F  +       +  + + +
Sbjct: 129 CGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIV 188

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
           +S   +  ++D   +  V CG    G E       +LI  Y + G + +ARK+FD +   
Sbjct: 189 LSSCARLVDIDLGKQ--VHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAV--- 243

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYI 244
                       + VSW +MI  Y + G    A ++FE M    L  D  ++ T+I+  +
Sbjct: 244 ---------VDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACV 294

Query: 245 HVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
            +  +++A +LFV+MP+ + + WN M+SG+ + G    A+DFFK M       W +    
Sbjct: 295 GLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNM-------WKT---- 343

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPD 363
                               G K  R T  S+LS  + +  L+ G+ +H Q + + +  +
Sbjct: 344 --------------------GVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSN 383

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           V + ++LI MYA+C  +  A+ +F+ +   +N+V WNAM+GG A +G+A++ ++LF  MR
Sbjct: 384 VYVGSSLINMYAKCEKMEAAKKVFDALD-ERNLVLWNAMLGGYAQNGYASKVMKLFSEMR 442

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
                P   T+ S+LSACA    +E GRQ   S + ++  E  +    +LVD+  + G L
Sbjct: 443 GCGFWPDEFTYTSILSACACLECLEMGRQ-LHSFIIKHNFEYNLFVENTLVDMYAKCGAL 501

Query: 484 EDAMDLIKGMPFEPDKAVWGALL 506
           E+A    + +    D   W A++
Sbjct: 502 EEARQQFEFIR-NRDNVSWNAII 523



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 139/517 (26%), Positives = 252/517 (48%), Gaps = 56/517 (10%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC---- 60
           Y K   +  A K F+++ +RD+++WN ++S Y S +GS  LE+  + F  +  ++C    
Sbjct: 126 YAKCGNVEFAAKAFNQLEKRDILAWNSVLSMY-SRQGS--LEQVIWCFGSL--QNCGVSP 180

Query: 61  --VTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMISGFLQNGDVANAIEFF 114
              T+  V+S  A+  +++   ++   +       N     ++I  + + G + +A + F
Sbjct: 181 NQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIF 240

Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR--------AYNTLI 166
           D +   D+ S +A+++G +Q G  +EA +V           ED+ +        A+ T+I
Sbjct: 241 DAVVDPDTVSWTAMIAGYVQVGLPEEALKVF----------EDMQKLGLVPDQVAFVTVI 290

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
                 GR+++A  LF ++P              N+V+WN MI  + K G  + A + F+
Sbjct: 291 TACVGLGRLDDACDLFVQMP------------NTNVVAWNVMISGHVKRGCDIEAIDFFK 338

Query: 227 QMLERDTFSWNTMISGYIHVLDMEEASN--LFVKMP------HPDTLTWNAMVSGYAQIG 278
            M +    S  + +   +  +   EA N  L V         + +    +++++ YA+  
Sbjct: 339 NMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCE 398

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
            +E A   F  + ++NLV WN+M+ G   N      +KLF +M+  G  PD  T++SILS
Sbjct: 399 KMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILS 458

Query: 339 MSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
             + +  L +G Q+H  + K     ++ + N L+ MYA+CGA+ EAR  FE ++   N V
Sbjct: 459 ACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDN-V 517

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWNA+I G        EA  +F+ M    + P  ++  S+LS CA+   +E+G Q    +
Sbjct: 518 SWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFL 577

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           V   G++  +   +SL+D+  + G +E A  +   MP
Sbjct: 578 VKS-GLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMP 613



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 155/315 (49%), Gaps = 26/315 (8%)

Query: 258 KMPHPDTLTW---------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           K  H  TL +         +A+V  YA+ GN+E A   F ++ ++++++WNS+++     
Sbjct: 101 KTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQ 160

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPIN 367
              E  I  F  +Q  G  P++ T++ +LS  + +VD+ LG Q+H  V K     +    
Sbjct: 161 GSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCE 220

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
            +LI MY++CG++V+AR IF+ + +  + VSW AMI G    G   EAL++F+ M+   +
Sbjct: 221 GSLIDMYSKCGSLVDARKIFDAV-VDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGL 279

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED-- 485
           +P  + F++V++AC   G +++    F  M       P     A  V I G   R  D  
Sbjct: 280 VPDQVAFVTVITACVGLGRLDDACDLFVQM-------PNTNVVAWNVMISGHVKRGCDIE 332

Query: 486 AMDLIKGM---PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV--LLY 540
           A+D  K M     +  ++  G++L A      +    +     +K +  NS  YV   L 
Sbjct: 333 AIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIK-QGLNSNVYVGSSLI 391

Query: 541 NMYADVGRWDDANEV 555
           NMYA   + + A +V
Sbjct: 392 NMYAKCEKMEAAKKV 406


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 218/660 (33%), Positives = 326/660 (49%), Gaps = 131/660 (19%)

Query: 1   MISGYVKRREMAKARKLFDEM-PQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE-- 57
           +IS Y K  +  KA  +F  M   RD++SW+ M+S + ++   GF   A   F  M E  
Sbjct: 107 LISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCF-ANNNMGF--RALLTFVDMIENG 163

Query: 58  ------------RDCVTWN-----------TVISGYAKT----------------GEMEE 78
                       R C T              V +GY ++                G++  
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGEL 138
           A ++F  MP RN V+W  MI+  +Q G    AI+ F  M           +SG+I     
Sbjct: 224 AFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVI----- 278

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
                      S C   E L+          GQ+   +  R       +  DR  G    
Sbjct: 279 -----------SACANMELLL---------LGQQLHSQAIRH-----GLTLDRCVGCC-- 311

Query: 199 KRNIVSWNSMIMCYAKA---GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM-EEASN 254
                    +I  YAK    G + +AR+IF+Q+L+ + FSW  MI+GY+      EEA +
Sbjct: 312 ---------LINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALD 362

Query: 255 LFVKM--PH--PDTLTW-----------------------------------NAMVSGYA 275
           LF  M   H  P+  T+                                   N+++S YA
Sbjct: 363 LFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYA 422

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           + G ++ A   F  + +KNL+S+N++I     N + E A++LF +++ +G      TF+S
Sbjct: 423 RSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFAS 482

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +LS ++ I  +  G QIH  V K+ +  +  + NALI+MY+RCG I  A  +FE+M+  +
Sbjct: 483 LLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMED-R 541

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           NV+SW ++I G A HGFAT+ALELF  M    V P  +T+I+VLSAC+H GLV EG +HF
Sbjct: 542 NVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHF 601

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           KSM  E+G+ PR+EH+A +VDI+GR G L +A+  I  MP++ D  VW   LGACRVH N
Sbjct: 602 KSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGN 661

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +EL + AA+ +++ EP +   Y+LL N+YA   +WD+ + +R  MK  N+ K  G SWV+
Sbjct: 662 LELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVE 721



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 119/411 (28%), Positives = 186/411 (45%), Gaps = 48/411 (11%)

Query: 102 LQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGED 157
           + NG +  AI   + M  +    D  + S  +   I+    D    V  K  ++ D   D
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKL-TQSDLQLD 100

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
            V   N+LI  Y + G+ E+A  +F  +  +           R+++SW++M+ C+A    
Sbjct: 101 SV-TLNSLISLYSKCGQWEKATSIFQLMGSS-----------RDLISWSAMVSCFANNNM 148

Query: 218 VVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQI 277
              A   F  M+E   +      +         E    FV +   D++    + +GY Q 
Sbjct: 149 GFRALLTFVDMIENGYYPNEYCFAAATRACSTAE----FVSV--GDSIFGFVVKTGYLQS 202

Query: 278 ----------------GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG-AIKLFIQ 320
                           G+L  A   F++MP++N V+W  MI        Y G AI LF++
Sbjct: 203 DVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRL-MQFGYAGEAIDLFLE 261

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARC-- 377
           M + G +PDR T S ++S  + +  L LG Q+H Q +   +  D  +   LI MYA+C  
Sbjct: 262 MILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSV 321

Query: 378 -GAIVEARIIFEEMKLLKNVVSWNAMIGGCASH-GFATEALELFKSMRSFKVLPTYITFI 435
            G++  AR IF+++ L  NV SW AMI G     G+  EAL+LF+ M    V+P + TF 
Sbjct: 322 DGSMCAARKIFDQI-LDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFS 380

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           S L ACA+   +  G Q F   V + G         SL+ +  R GR++DA
Sbjct: 381 STLKACANLAALRIGEQVFTHAV-KLGFSSVNCVANSLISMYARSGRIDDA 430



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 137/530 (25%), Positives = 222/530 (41%), Gaps = 92/530 (17%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSM-PARNVVSWNAMISGFLQNGDVANAIEFFD 115
           + D VT N++IS Y+K G+ E+A  +F  M  +R+++SW+AM+S F  N     A+  F 
Sbjct: 98  QLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFV 157

Query: 116 RMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
            M               I+NG             +R     + V       VG    G V
Sbjct: 158 DM---------------IENGYYPN--EYCFAAATRACSTAEFVS------VGDSIFGFV 194

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA-GDVVSAREIFEQMLERDTF 234
            +   L   + V C                  +I  + K  GD+VSA ++FE+M ER+  
Sbjct: 195 VKTGYLQSDVCVGC-----------------GLIDMFVKGRGDLVSAFKVFEKMPERNAV 237

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQI------------- 277
           +W  MI+  +      EA +LF++M      PD  T + ++S  A +             
Sbjct: 238 TWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQA 297

Query: 278 -------------------------GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY- 311
                                    G++  A   F ++   N+ SW +MI G      Y 
Sbjct: 298 IRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYD 357

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNAL 370
           E A+ LF  M +    P+  TFSS L   + +  L +G Q+     K     V  + N+L
Sbjct: 358 EEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSL 417

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           I+MYAR G I +AR  F+ +   KN++S+N +I   A +  + EALELF  +    +  +
Sbjct: 418 ISMYARSGRIDDARKAFDIL-FEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGAS 476

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
             TF S+LS  A  G + +G Q   + V + G++       +L+ +  R G +E A  + 
Sbjct: 477 AFTFASLLSGAASIGTIGKGEQ-IHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVF 535

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           + M  + +   W +++     H     A  A E   K+  E   P ++ Y
Sbjct: 536 EDME-DRNVISWTSIITGFAKHG---FATQALELFHKMLEEGVRPNLVTY 581



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 3/201 (1%)

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPI 366
           N     AI     M  +G  PD  T+S  L          +G  +H+ +T++ +  D   
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            N+LI++Y++CG   +A  IF+ M   ++++SW+AM+   A++     AL  F  M    
Sbjct: 104 LNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI-VGRHGRLED 485
             P    F +   AC+ A  V  G   F  +V    ++  +     L+D+ V   G L  
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 486 AMDLIKGMPFEPDKAVWGALL 506
           A  + + MP E +   W  ++
Sbjct: 224 AFKVFEKMP-ERNAVTWTLMI 243


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 200/638 (31%), Positives = 329/638 (51%), Gaps = 82/638 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS--GFLEEARYLFDIMPE- 57
           +++ Y K   ++ AR++FD  P+RD+V+WN ++  Y +S  S  G  +E  +LF ++   
Sbjct: 118 LLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRAS 177

Query: 58  -------------RDCVT--------------------WNTVISG-----YAKTGEMEEA 79
                        + C+                     W+  +SG     Y+K G M +A
Sbjct: 178 LGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDA 237

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQN 135
             LF+ M  R+VV WN M+ G++Q G    A + F          D  S+  +++G +  
Sbjct: 238 RLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWA 297

Query: 136 GELD-----EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           G  D     +   + VK G   D     V   N+L+  Y + G    AR++F+ +     
Sbjct: 298 GTDDLELGKQVHGIAVKSGLDSD-----VSVANSLVNMYSKMGCAYFAREVFNDMK---- 348

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMI------ 240
                     +++SWNSMI   A++     +  +F  +L      D F+  ++       
Sbjct: 349 --------HLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAK 400

Query: 241 -SGYIHVLDM-EEASNLFVKMPHPDTLTWNA-MVSGYAQIGNLELALDFFKRMPQKNLVS 297
             G + +LD  ++     +K      L  N+ ++  Y + G++  A   F  +   + V+
Sbjct: 401 ACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA 460

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           W SMI+GC  N + + A++++ +M+     PD +TF++++  SS +  L  G Q+H  V 
Sbjct: 461 WTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVI 520

Query: 358 K-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           K   + D  +  +L+ MYA+CG I +A  +F++M  ++N+  WNAM+ G A HG A EA+
Sbjct: 521 KLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMN-VRNIALWNAMLVGLAQHGNAEEAV 579

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
            LFKSM+S  + P  ++FI +LSAC+HAGL  E  ++  SM N+YGIEP IEH++ LVD 
Sbjct: 580 NLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDA 639

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           +GR G +++A  +I+ MPF+   ++  ALLGACR+  +VE  +  A  L  +EP +S  Y
Sbjct: 640 LGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAY 699

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           VLL N+YA   RWDD  + R +MK  N+KK  G+SW+D
Sbjct: 700 VLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWID 737



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 194/438 (44%), Gaps = 75/438 (17%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD-----MEEASNLF---- 256
           N+++  Y+K G + SAR++F+   ERD  +WN ++  Y   +D      +E  +LF    
Sbjct: 116 NNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLR 175

Query: 257 ------VKMPHPDTLT------------------------WNAMVSG-----YAQIGNLE 281
                  +M     L                         W+  VSG     Y++ G + 
Sbjct: 176 ASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMR 235

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS--M 339
            A   F  M ++++V WN M+ G       + A +LF +    G +PD  +   IL+  +
Sbjct: 236 DARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCL 295

Query: 340 SSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            +G  DL LG Q+H +  K+ +  DV + N+L+ MY++ G    AR +F +MK L +++S
Sbjct: 296 WAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHL-DLIS 354

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL-----SACAHAGLVEEGRQH 453
           WN+MI  CA      E++ LF  +    + P + T  S+       AC    L+++G+Q 
Sbjct: 355 WNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQ- 413

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE----PDKAVWGALLGAC 509
             +   + G +  +   + ++D+  + G + +A     G+ F     PD   W +++  C
Sbjct: 414 IHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNA-----GIVFNYISAPDDVAWTSMISGC 468

Query: 510 RVHNNVELAQVAAEALM--KVEPENSTPYVLLYNMYA----DVGRWDDANEVRLLMKSNN 563
             + N + A      +   +V P+  T   L+         + GR   AN ++L    + 
Sbjct: 469 VDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKL----DC 524

Query: 564 IKKP-TGYSWVD-FSPCG 579
           +  P  G S VD ++ CG
Sbjct: 525 VSDPFVGTSLVDMYAKCG 542



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 13/170 (7%)

Query: 345 DLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           +L LG   H ++V      D  ++N L+TMY++CG++  AR +F+     +++V+WNA++
Sbjct: 92  NLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTP-ERDLVTWNAIL 150

Query: 404 GGCASH-----GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV--EEGRQHFKS 456
           G  A+      G A E L LF+ +R+     T +T   VL  C ++G +   EG   +  
Sbjct: 151 GAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAI 210

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            +   G+E  +    +LV+I  + GR+ DA  L   M  E D  +W  +L
Sbjct: 211 KI---GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMR-ERDVVLWNMML 256


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 206/698 (29%), Positives = 334/698 (47%), Gaps = 138/698 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
           +++ Y K R +  A +LF +MPQR+ VS N +IS  +     G+  +A   +D      +
Sbjct: 78  ILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRC---GYERQALDTYDSVMLDGV 134

Query: 55  MPERDCVTWNTVISG-----------------------------------YAKTGEMEEA 79
           +P    +T+ TV S                                    YAK G   +A
Sbjct: 135 IPSH--ITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNADA 192

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVS----- 130
           LR+F  +P  N V++  M+ G  Q   +  A E F  M  +    DS SLS+++      
Sbjct: 193 LRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCAKG 252

Query: 131 --------GLIQNGELDEAARVLVKCGSR-----CDGGEDL------------------- 158
                   G+  N +  +   + VK G       C+   D+                   
Sbjct: 253 ERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNR 312

Query: 159 --VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
             V ++N +I GYG R   E+A +   ++     + +G   ++ + V++ +M+    K+G
Sbjct: 313 HSVVSWNIMIAGYGNRCNSEKAAEYLQRM-----QSDG---YEPDDVTYINMLTACVKSG 364

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVS 272
           DV + R+IF+ M      SWN ++SGY    D  EA  LF KM     HPD  T   ++S
Sbjct: 365 DVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILS 424

Query: 273 G-----------------------------------YAQIGNLELALDFFKRMPQKNLVS 297
                                               Y++ G +EL+   F ++P+ ++V 
Sbjct: 425 SCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVC 484

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMV 356
           WNSM+AG   N   + A+  F +M+  G  P   +F++++S  + +  L  G Q H Q+V
Sbjct: 485 WNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFHAQIV 544

Query: 357 TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
               + D+ + ++LI MY +CG +  AR  F+ M   +N V+WN MI G A +G    AL
Sbjct: 545 KDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMPG-RNTVTWNEMIHGYAQNGDGHNAL 603

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
            L+  M S    P  IT+++VL+AC+H+ LV+EG + F +M+ +YG+ P++ H+  ++D 
Sbjct: 604 CLYNDMISSGEKPDDITYVAVLTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCIIDC 663

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           + R GR  +   ++  MP + D  VW  +L +CR+H N+ LA+ AAE L +++P+NS  Y
Sbjct: 664 LSRAGRFNEVEVILDAMPCKDDAVVWEVVLSSCRIHANLSLAKRAAEELYRLDPQNSASY 723

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           VLL NMY+ +G+WDDA+ VR LM  N ++K  GYS  D
Sbjct: 724 VLLANMYSSLGKWDDAHVVRDLMSHNQVRKDPGYSRND 761



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 135/525 (25%), Positives = 249/525 (47%), Gaps = 77/525 (14%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           +  A ++FD +P ++  +WN +++ Y K   ++ A RLF  MP RN VS N +IS  ++ 
Sbjct: 57  IASACHVFDNIPHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRC 116

Query: 105 GDVANAIEFFDR------MPGRDSASLSALVSGLIQNGELDEAAR-VLVKCG-------- 149
           G    A++ +D       +P   + +      G + + +       V++K G        
Sbjct: 117 GYERQALDTYDSVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVV 176

Query: 150 -------SRCDGGEDLVR-----------AYNTLIVGYGQRGRVEEARKLF--------- 182
                  ++C    D +R            + T++ G  Q  +++EA +LF         
Sbjct: 177 NALLCMYAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIR 236

Query: 183 -DKIPVN-----CDRGEGNV----------------------RFKRNIVSWNSMIMCYAK 214
            D + ++     C +GE +V                       F+R++   NS++  YAK
Sbjct: 237 VDSVSLSSMLGVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAK 296

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAM 270
            GD+ SA ++F  +      SWN MI+GY +  + E+A+    +M      PD +T+  M
Sbjct: 297 IGDMDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINM 356

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
           ++   + G++      F  MP  +L SWN++++G   N D+  A++LF +MQ + + PDR
Sbjct: 357 LTACVKSGDVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDR 416

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEE 389
            T + ILS  + +  L  G ++H    K     DV + ++LI +Y++CG +  ++ +F +
Sbjct: 417 TTLAVILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSK 476

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           +  L +VV WN+M+ G + +    +AL  FK MR     P+  +F +V+S+CA    + +
Sbjct: 477 LPEL-DVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQ 535

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           G+Q F + + + G    I   +SL+++  + G +  A      MP
Sbjct: 536 GQQ-FHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMP 579



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 170/377 (45%), Gaps = 35/377 (9%)

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
           +G VV AR +F   L  DTF  N  I  Y     +  A ++F  +PH +  +WNA+++ Y
Sbjct: 24  SGKVVHAR-LFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNIPHKNIFSWNAILAAY 82

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
            +  NL+ A   F +MPQ+N VS N++I+          A+  +  + ++G  P   TF+
Sbjct: 83  CKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYDSVMLDGVIPSHITFA 142

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLL 393
           ++ S    ++D   G + H +V K  +  ++ + NAL+ MYA+CG   +A  +F ++   
Sbjct: 143 TVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNADALRVFRDIP-E 201

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA---------HA 444
            N V++  M+GG A      EA ELF+ M    +    ++  S+L  CA         H 
Sbjct: 202 PNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCAKGERDVGPCHG 261

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
                  +   ++  + G E  +    SL+D+  + G ++ A  +   +        W  
Sbjct: 262 ISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLN-RHSVVSWNI 320

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL---MKS 561
           ++     + N   ++ AAE L +++ +   P              DD   + +L   +KS
Sbjct: 321 MIAG---YGNRCNSEKAAEYLQRMQSDGYEP--------------DDVTYINMLTACVKS 363

Query: 562 NNIKKPTGYSWVDFSPC 578
            +++  TG    D  PC
Sbjct: 364 GDVR--TGRQIFDCMPC 378


>gi|357518009|ref|XP_003629293.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355523315|gb|AET03769.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 672

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 199/652 (30%), Positives = 315/652 (48%), Gaps = 94/652 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y +R  +  A KLFDEMPQ +  SWN +I  +I+    G   ++  LF  MP +  
Sbjct: 36  LLQLYSRRGSLHDASKLFDEMPQPNPFSWNTLIEAHINL---GHRNKSLELFHAMPHKTH 92

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP-- 118
            +WN ++S  +K+G++++A  LFN+MP +N + WN+MI G+ ++G   N++  F  M   
Sbjct: 93  YSWNLIVSTLSKSGDLQQAQALFNAMPMKNPLVWNSMIHGYSRHGYPRNSLLLFKEMNLD 152

Query: 119 -----GRDSASLSALVSGLIQNGELDEA----ARVLVK----------CGS------RCD 153
                 RD+  LS +         LD      ARV +           C S      +C 
Sbjct: 153 PLETVHRDAFVLSTVFGACADLFALDCGKQVHARVFIDGFEFEQDKVLCSSIVNFYGKCG 212

Query: 154 GGEDLVR-----------AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
             +   R           + + L+ GY   GR+ +ARK+FD     C             
Sbjct: 213 DLDSAARVVGFVKEVDDFSLSALVSGYANAGRMSDARKVFDNKVDPCS------------ 260

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQM---------------------------------- 228
           V WNS+I  Y   G+ + A  +F +M                                  
Sbjct: 261 VLWNSIISGYVSNGEEMEALALFNKMRRNGVWGDFSAVANILSISSSLLNVELVKQMHDH 320

Query: 229 -----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
                   D    +T++  Y       ++  LF ++   D +  N M++ Y   G +E A
Sbjct: 321 AFKIGATHDIVVASTLLDAYSKCQHPHDSCKLFHELKVYDAILLNTMITVYCNCGRVEDA 380

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
            + F  MP K L+SWNS++ G   N     A+  F  M     K D+ +F+S++S  +  
Sbjct: 381 KEVFNSMPNKTLISWNSILVGLTQNACPSEALDTFSMMNKLDVKMDKFSFASVISACAIK 440

Query: 344 VDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             L LG Q+  + +T  +  D  I  +L+  Y +CG +   R +F+ M +  + VSWN M
Sbjct: 441 SSLELGEQLFGKAITLGLESDQIICTSLVDFYCKCGLVEMGRKVFDGM-IKTDEVSWNTM 499

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           + G A++G+  EAL LF  M    V P+ ITF  +LSAC H GLVEEGR  F++M ++Y 
Sbjct: 500 LMGYATNGYGIEALTLFNEMGYSGVRPSAITFTGILSACDHCGLVEEGRDLFRTMKHDYD 559

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           I P IEH++ +VD+  R G   +AM LI+ MPF+ D  +W ++L  C  H N  + ++AA
Sbjct: 560 INPGIEHYSCMVDLFARVGCFGEAMYLIEEMPFQADANMWLSVLRGCVSHGNKTIGKMAA 619

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           E +++++P NS  Y+ L N+ A    W+ + EVR LM++ N++K  G SW+D
Sbjct: 620 EKIIQLDPGNSGAYIQLSNILATSEDWEGSAEVRELMRNKNVQKIPGCSWMD 671



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 136/515 (26%), Positives = 235/515 (45%), Gaps = 39/515 (7%)

Query: 9   REMAKARKLFDEMPQ-----RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTW 63
           R + +AR+L   + +       V++ N ++  Y S RGS  L +A  LFD MP+ +  +W
Sbjct: 8   RTIREARQLHLSLLKTGNLHSSVITTNRLLQLY-SRRGS--LHDASKLFDEMPQPNPFSW 64

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           NT+I  +   G   ++L LF++MP +   SWN ++S   ++GD+  A   F+ MP ++  
Sbjct: 65  NTLIEAHINLGHRNKSLELFHAMPHKTHYSWNLIVSTLSKSGDLQQAQALFNAMPMKNPL 124

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG--------QRGRV 175
             ++++ G  ++G    +  +L+      D  E + R    L   +G          G+ 
Sbjct: 125 VWNSMIHGYSRHGYPRNS--LLLFKEMNLDPLETVHRDAFVLSTVFGACADLFALDCGKQ 182

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
             AR   D              F+++ V  +S++  Y K GD+ SA  +   + E D FS
Sbjct: 183 VHARVFID-----------GFEFEQDKVLCSSIVNFYGKCGDLDSAARVVGFVKEVDDFS 231

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
            + ++SGY +   M +A  +F     P ++ WN+++SGY   G    AL  F +M +  +
Sbjct: 232 LSALVSGYANAGRMSDARKVFDNKVDPCSVLWNSIISGYVSNGEEMEALALFNKMRRNGV 291

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVE----GEKPDRHTFSSILSMSSGIVDLHLGMQ 351
               S +A   +       ++L  QM       G   D    S++L   S     H   +
Sbjct: 292 WGDFSAVANILSISSSLLNVELVKQMHDHAFKIGATHDIVVASTLLDAYSKCQHPHDSCK 351

Query: 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           +   +    + D  + N +IT+Y  CG + +A+ +F  M   K ++SWN+++ G   +  
Sbjct: 352 LFHELK---VYDAILLNTMITVYCNCGRVEDAKEVFNSMP-NKTLISWNSILVGLTQNAC 407

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
            +EAL+ F  M    V     +F SV+SACA    +E G Q F   +   G+E       
Sbjct: 408 PSEALDTFSMMNKLDVKMDKFSFASVISACAIKSSLELGEQLFGKAIT-LGLESDQIICT 466

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           SLVD   + G +E    +  GM  + D+  W  +L
Sbjct: 467 SLVDFYCKCGLVEMGRKVFDGM-IKTDEVSWNTML 500



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 18/167 (10%)

Query: 351 QIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           Q+H  + KT  +   V   N L+ +Y+R G++ +A  +F+EM    N  SWN +I    +
Sbjct: 15  QLHLSLLKTGNLHSSVITTNRLLQLYSRRGSLHDASKLFDEMP-QPNPFSWNTLIEAHIN 73

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
            G   ++LELF +M       T+ ++  ++S  + +G +++ +  F +M  +    P + 
Sbjct: 74  LGHRNKSLELFHAMPH----KTHYSWNLIVSTLSKSGDLQQAQALFNAMPMK---NPLV- 125

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEP------DKAVWGALLGAC 509
            + S++    RHG   +++ L K M  +P      D  V   + GAC
Sbjct: 126 -WNSMIHGYSRHGYPRNSLLLFKEMNLDPLETVHRDAFVLSTVFGAC 171


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 217/716 (30%), Positives = 343/716 (47%), Gaps = 149/716 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K   +  A+ +F+ +  +D VSW  MISG +S  G    +EA  LF  M +   
Sbjct: 153 LIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISG-LSQNGRE--DEAILLFCQMHKSAV 209

Query: 61  ------------------------------VTW---------NTVISGYAKTGEMEEALR 81
                                         V W         N +++ Y++ G +  A +
Sbjct: 210 IPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQ 269

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSG------ 131
           +F+ M  R+ +S+N++ISG  Q G    A++ F++M       D  ++++L+S       
Sbjct: 270 IFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGA 329

Query: 132 -------------------LIQNGELDEAARVLVKCGSRCDGGEDLVRA-------YNTL 165
                              LI  G L +   + VKC       E  +         +N +
Sbjct: 330 GYKGKQLHSYVIKMGMSSDLIIEGSLLD---LYVKCFDIETAHEYFLTTETENVVLWNVM 386

Query: 166 IVGYGQRGRVEEARKLFDKIPV---------------NC------DRGEG------NVRF 198
           +V YGQ G + E+  +F ++ +                C      D GE          F
Sbjct: 387 LVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGF 446

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK 258
           + N+   + +I  YAK G++ +AR I +++ E D  SW  MI+GY       EA  LF +
Sbjct: 447 QFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQE 506

Query: 259 MPHP---------------------------------------DTLTWNAMVSGYAQIGN 279
           M +                                        D    NA+VS YA+ G 
Sbjct: 507 MENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGR 566

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
            + A   F+++  K+ +SWN++I+G   +   E A+++F QM   G + +  TF S +S 
Sbjct: 567 AQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSA 626

Query: 340 SSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
           ++   ++  G QIH M+ KT    +   +N LIT+Y++CG+I +A+  F EM   KNVVS
Sbjct: 627 TANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPE-KNVVS 685

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WNAMI G + HG+ +EA+ LF+ M+   ++P ++TF+ VLSAC+H GLV EG  +F+SM 
Sbjct: 686 WNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMS 745

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            E+G+ P+ EH+  +VD++GR   L  A + I+ MP EPD  +W  LL AC VH N+E+ 
Sbjct: 746 KEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIG 805

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + AA  L+++EPE+S  YVLL NMYA  G+WD  +  R +MK   +KK  G SW++
Sbjct: 806 EFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIE 861



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 161/579 (27%), Positives = 262/579 (45%), Gaps = 113/579 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y+   E+  A KLFD++P  +V  WN +ISG ++ +      +   LF +M   + 
Sbjct: 51  LIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKK---LASQVLGLFSLMITENV 107

Query: 61  V----TWNTVI---SGYAKTGEMEEALRL------FNSMPARNVVSWNAMISGFLQNGDV 107
                T+ +V+   SG     ++ E +        F S P    +  N +I  + +NG V
Sbjct: 108 TPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSP----LVCNPLIDLYSKNGHV 163

Query: 108 ANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV 167
             A   F+R+  +DS S  A++SGL QNG  DEA  +L+ C                   
Sbjct: 164 DLAKLVFERLFLKDSVSWVAMISGLSQNGREDEA--ILLFCQM----------------- 204

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN------IVSW---------NSMIMCY 212
               +  V     +F  +   C + E    FK        IV W         N+++  Y
Sbjct: 205 ---HKSAVIPTPYVFSSVLSACTKIE---LFKLGEQLHGFIVKWGLSSETFVCNALVTLY 258

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWN 268
           ++ G++++A +IF +M  RD  S+N++ISG       + A  LF KM      PD +T  
Sbjct: 259 SRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVA 318

Query: 269 AMVSGYAQIG-----------------------------------NLELALDFFKRMPQK 293
           +++S  A +G                                   ++E A ++F     +
Sbjct: 319 SLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETE 378

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           N+V WN M+       +   +  +F+QMQ+EG  P+++T+ SIL   + +  L LG QIH
Sbjct: 379 NVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIH 438

Query: 354 QMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
             V K+    +V + + LI MYA+ G +  AR I + ++  ++VVSW AMI G   H   
Sbjct: 439 TQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIAGYTQHDLF 497

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFA 471
            EAL+LF+ M +  +    I F S +SACA    + +G+Q H +S ++ Y  +  I +  
Sbjct: 498 AEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGN-- 555

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFE----PDKAVWGALL 506
           +LV +  R GR +DA      + FE     D   W AL+
Sbjct: 556 ALVSLYARCGRAQDAY-----LAFEKIDAKDNISWNALI 589



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 127/493 (25%), Positives = 217/493 (44%), Gaps = 93/493 (18%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
           +I  Y   GE++ A++LF+ +P+ NV  WN +ISG L     +  +  F  M        
Sbjct: 51  LIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLM-------- 102

Query: 126 SALVSGLIQNGELDEA--ARVLVKCGSRCDGGE---DLVRAYNTLIVGYGQRGRVEEARK 180
                 + +N   DE+  A VL      C GG+    +    +  I+ +G          
Sbjct: 103 ------ITENVTPDESTFASVL----RACSGGKAPFQVTEQIHAKIIHHG---------- 142

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            F   P+ C                N +I  Y+K G V  A+ +FE++  +D+ SW  MI
Sbjct: 143 -FGSSPLVC----------------NPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMI 185

Query: 241 SGYIHVLDMEEASNLFVKM------PHP-------------------------------- 262
           SG       +EA  LF +M      P P                                
Sbjct: 186 SGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLS 245

Query: 263 -DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            +T   NA+V+ Y++ GNL  A   F +M +++ +S+NS+I+G       + A++LF +M
Sbjct: 246 SETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKM 305

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAI 380
           Q++  KPD  T +S+LS  + +   + G Q+H  V K  +  D+ I  +L+ +Y +C  I
Sbjct: 306 QLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDI 365

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
             A   F   +  +NVV WN M+      G  +E+  +F  M+   ++P   T+ S+L  
Sbjct: 366 ETAHEYFLTTE-TENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRT 424

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C   G ++ G Q   + V + G +  +   + L+D+  +HG L+ A  +++ +  E D  
Sbjct: 425 CTSLGALDLGEQ-IHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVV 482

Query: 501 VWGALLGACRVHN 513
            W A++     H+
Sbjct: 483 SWTAMIAGYTQHD 495


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 198/613 (32%), Positives = 323/613 (52%), Gaps = 67/613 (10%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISS---------------RGSGFLEEARYLFDI---- 54
           ARKLFDE+    + SWN MI  Y +S                G  + +   Y F I    
Sbjct: 75  ARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG 134

Query: 55  ---MPE---------------RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNA 96
              +PE                D    N++++ Y   GEME A R+F+ M  R +VSWN 
Sbjct: 135 DYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNT 194

Query: 97  MISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRC 152
           MI+G+ +NG V  A+  FD M G+    D A++ +++       EL+   RV      + 
Sbjct: 195 MINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVK- 253

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
           + GED +  +N+L+  Y + G ++EA+ +F ++             KR++VSW +M+  Y
Sbjct: 254 NLGED-ISVWNSLLDMYAKCGNMDEAQMIFYEMD------------KRDVVSWTTMMNGY 300

Query: 213 AKAGDVVSAREIFEQMLERDTFSWN-----TMISGYIHVLDMEEASNL----FVKMPHPD 263
              GD  SA  +  QM++ ++   N     +++S    +  ++    L      +    +
Sbjct: 301 ILNGDARSAL-LLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESE 359

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
            +   A++  YA+  N+ L+   F +  ++    WN++I+GC  N     AI+LF QM +
Sbjct: 360 VIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLM 419

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVE 382
           E   P+  T +S+L   + + DL     +H  + ++  +  + +   LI +Y++CG++  
Sbjct: 420 EAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLES 479

Query: 383 ARIIFEEM-KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
           A  IF  + K  K++++W+A+I G   HG    A+ LF  M    V P  ITF S+L AC
Sbjct: 480 AHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHAC 539

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
           +HAGLV+EG   FK M+ +  +  R +H+  ++D++GR GRLE+A +LI+ M F P+ AV
Sbjct: 540 SHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAV 599

Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
           WGALLG+C +H NVEL +VAA+ L ++EP N+  YVLL N+Y+ VGRW DA  VRL+M +
Sbjct: 600 WGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNN 659

Query: 562 NNIKKPTGYSWVD 574
             ++K   +S ++
Sbjct: 660 IGLRKTPAHSLIE 672



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 143/547 (26%), Positives = 235/547 (42%), Gaps = 108/547 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           +++ Y+   EM  AR++FD M +R +VSWN MI+GY     +G ++EA  +FD M     
Sbjct: 164 LMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFK---NGCVKEALMVFDWMIGKGI 220

Query: 57  ERDCVT-----------------------------------WNTVISGYAKTGEMEEALR 81
           E DC T                                   WN+++  YAK G M+EA  
Sbjct: 221 EPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQM 280

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           +F  M  R+VVSW  M++G++ NGD  +A+     M         ++    +        
Sbjct: 281 IFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMM------QFESVKPNFVT------L 328

Query: 142 ARVLVKCGS-------RCDGG-------EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV 187
           A VL  C S       RC  G       E  V     LI  Y +   V  + ++F K   
Sbjct: 329 ASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTS- 387

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGY 243
                      K+    WN++I      G    A E+F+QML    + +  + N+++  Y
Sbjct: 388 -----------KQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAY 436

Query: 244 IHVLDMEEASNLFVKMPHPDTLT----WNAMVSGYAQIGNLELALDFFKRMPQ--KNLVS 297
             + D+++A N+   +     L+       ++  Y++ G+LE A + F  +P+  K++++
Sbjct: 437 AFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIIT 496

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQM 355
           W+++IAG   +   E AI LF QM   G KP+  TF+SIL   S  G+VD  LG+    +
Sbjct: 497 WSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFML 556

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
               +         +I +  R G + EA  +   M    N   W A++G C  H    E 
Sbjct: 557 EDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIH----EN 612

Query: 416 LELFKSMRS--FKVLP----TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           +EL +      F++ P     Y+   ++ SA           +H + M+N  G+     H
Sbjct: 613 VELGEVAAKWLFELEPGNTGNYVLLANIYSAVGR----WRDAEHVRLMMNNIGLRKTPAH 668

Query: 470 FASLVDI 476
             SL+++
Sbjct: 669 --SLIEV 673


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 177/557 (31%), Positives = 301/557 (54%), Gaps = 59/557 (10%)

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG----DVANAIEFFDRM 117
           +WN +I GY+K  EM  A+  F  MP R+ VSWN +IS F  +G     +   +E + + 
Sbjct: 61  SWNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQG 120

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
              +S + ++++S      +      +  +   R +   D++   N L+  Y + G ++ 
Sbjct: 121 CQPNSMTYASVLSACANIYDFQWGKHLHARI-VRVEPFLDVLVG-NGLVDMYAKCGLIDA 178

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DT 233
           ++++F+ +             + N+V+W S+I   A  G      +IF QM +     D 
Sbjct: 179 SKRVFNTLR------------EHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDN 226

Query: 234 FSW-----------------------------------NTMISGYIHVLDMEEASNLFVK 258
           F                                     N  +S Y    D E+AS  F  
Sbjct: 227 FILATILGVCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFET 286

Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
           M   D ++W  M++ ++  GN+E A D+F RMP++N++SWN+M+     N  +E  +KL+
Sbjct: 287 MAAHDVISWTTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLY 346

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI-HQMVTKTVIPDVPINNALITMYARC 377
           I M  +  +PD  TF +++   S +    LG QI  Q V   +  DV + N+ IT+Y+RC
Sbjct: 347 ILMLRQEVRPDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRC 406

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G I EA+ +F+ ++  KN++SWN+++GG A +G   + +E+F++M      P +IT+I++
Sbjct: 407 GRIEEAQNLFDSIQE-KNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAI 465

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           LS C+H+GLV+E + HF SM  ++GI   +EHF  +VD+ GR G L+ A+D+I  MPF+P
Sbjct: 466 LSGCSHSGLVKEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKP 525

Query: 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
           + ++WGALL ACR+H++ E+A++A + L+++  EN   Y+LL N Y+  GR +  +EVR 
Sbjct: 526 NASIWGALLSACRIHHDTEMAELAMKNLLELNTENFESYILLANTYSSFGRLECVSEVRQ 585

Query: 558 LMKSNNIKKPTGYSWVD 574
           +MK   ++K  G SW++
Sbjct: 586 VMKEKRVQKDPGCSWIE 602



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 163/341 (47%), Gaps = 13/341 (3%)

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           N++I  YI    +  A  +F+++  P   +WN M+ GY+++  +  A+D F++MP+++ V
Sbjct: 32  NSIIDMYIKCDAIYAAEQVFLRIEKPSLFSWNCMIYGYSKLHEMGRAIDTFRQMPERDSV 91

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SWN++I+    +  +  ++  F++M ++G +P+  T++S+LS  + I D   G  +H  +
Sbjct: 92  SWNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTYASVLSACANIYDFQWGKHLHARI 151

Query: 357 TKTVIP--DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
            + V P  DV + N L+ MYA+CG I  ++ +F  ++   NVV+W ++I G A  G   E
Sbjct: 152 VR-VEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLR-EHNVVTWTSLISGIAHFGSQEE 209

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
             ++F  MR   V+       ++L  C     +  G Q       + G+   +    + +
Sbjct: 210 VYDIFYQMRKDCVIMDNFILATILGVCEGETNISIGEQ-LHGFTVKTGMNSSVPVGNATL 268

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
            +  + G  E A    + M    D   W  ++ +     NVE A+   +   ++   N  
Sbjct: 269 SMYAKCGDFEKASLAFETMA-AHDVISWTTMITSFSHSGNVERAR---DYFNRMPERNVI 324

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
            +  +   Y     W++  ++ +LM    ++      W+ F
Sbjct: 325 SWNAMLGAYCQNSFWEEGLKLYILMLRQEVRP----DWITF 361



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 140/286 (48%), Gaps = 28/286 (9%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G  E+A   F+ M   D ++W T+I+ ++ +G +E A   FN MP RNV+SWNAM+  + 
Sbjct: 275 GDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYC 334

Query: 103 QNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
           QN      ++ +  M  +    D  +   ++ G      + +    ++    +   G D 
Sbjct: 335 QNSFWEEGLKLYILMLRQEVRPDWITFVTMI-GACSELAISKLGTQILSQAVKVGLGSD- 392

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           V   N+ I  Y + GR+EEA+ LFD I             ++N++SWNS++  YA+ G+ 
Sbjct: 393 VSVVNSAITLYSRCGRIEEAQNLFDSIQ------------EKNLISWNSIMGGYAQNGEG 440

Query: 219 VSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT-----WNA 269
           +   EIF+ ML    + D  ++  ++SG  H   ++EA   F  M     ++     +  
Sbjct: 441 MKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLVKEAKYHFNSMTKDFGISVTLEHFVC 500

Query: 270 MVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGA 314
           MV  + + G L+LALD   +MP K N   W ++++ C  + D E A
Sbjct: 501 MVDLFGRAGLLKLALDMIDQMPFKPNASIWGALLSACRIHHDTEMA 546


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 185/520 (35%), Positives = 284/520 (54%), Gaps = 41/520 (7%)

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
           +KT  +  A  +F  +   N    N M+  + ++     A+ F+  M  +          
Sbjct: 55  SKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRK---------- 104

Query: 131 GLIQNGELDEAARVLVKCGSRCD-------GGEDLVRAY-------NTLIVGYGQRGRVE 176
           GL+  G+      VL  CG+ C         GE + R +       N LI  Y + G   
Sbjct: 105 GLL--GDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETG 162

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            AR +FD               ++++VSWNSM+  Y   G++ +A+ +F++M ERD  SW
Sbjct: 163 WARAVFDGFS------------EKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSW 210

Query: 237 NTMISGYIHVL-DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           + MI GY   + ++  A   F  MP  D ++WN+M+ GYA++G +E+A + F +M QKN+
Sbjct: 211 SIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNV 270

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-Q 354
           +SW+ MI G   ++D + A+ LF QM  +G KPDR +    +S  S +  L  G  IH  
Sbjct: 271 ISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLY 330

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           M    ++ D+ +  AL+ MY +CG+  EAR IF  M   +NVVSWN MI G   +GF  E
Sbjct: 331 MKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPE-RNVVSWNVMIVGLGMNGFGKE 389

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           ALE F  M   ++    + F+ VL AC+HA LV EG   F  M   Y +EP++EH+  LV
Sbjct: 390 ALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLV 449

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D++GR G+L+   ++I+ MP +P+ A+WG+LL ACR+H NV LA++  E L +++ ++S 
Sbjct: 450 DLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSG 509

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            YVL+ N+YADVG W+    +R LMK   +KK  G S ++
Sbjct: 510 VYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIE 549



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 110/324 (33%), Positives = 164/324 (50%), Gaps = 30/324 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+ GYV   EM  A+ +FDEMP+RDVVSW++MI GY   +  G +  AR  FD MP RD 
Sbjct: 182 MLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGY--GKKMGEVNRARVFFDSMPTRDL 239

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN++I GYAK GEME A  +F+ M  +NV+SW+ MI G+ Q+ D   A+  F +M  +
Sbjct: 240 VSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQ 299

Query: 121 ----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               D  S+   VS   Q G LD+  R +     R     D+V     L+  Y + G  +
Sbjct: 300 GIKPDRVSVVGAVSACSQLGALDQ-GRWIHLYMKRNRMLLDIV-VQTALVDMYLKCGSRD 357

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LER---D 232
           EAR++F+ +P            +RN+VSWN MI+     G    A E F QM +ER   D
Sbjct: 358 EARRIFNSMP------------ERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMD 405

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFF 287
              +  ++    H   + E  ++F +M       P    +  +V    + G L+   +  
Sbjct: 406 DLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNII 465

Query: 288 KRMPQK-NLVSWNSMIAGCETNKD 310
           + MP K N   W S++  C  +++
Sbjct: 466 QSMPMKPNAALWGSLLLACRIHQN 489



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 189/449 (42%), Gaps = 99/449 (22%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR------------------ 89
           A  +F  + + +    NT++  Y ++   E ALR +  M  +                  
Sbjct: 63  AELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGA 122

Query: 90  ---------------------NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSAL 128
                                +V   N +IS + + G+   A   FD    +D  S +++
Sbjct: 123 MCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSM 182

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR-GRVEEARKLFDKIPV 187
           + G +  GE++ A  +  +   R     D+V +++ +I GYG++ G V  AR  FD +P 
Sbjct: 183 LGGYVWCGEMENAQNMFDEMPER-----DVV-SWSIMIDGYGKKMGEVNRARVFFDSMPT 236

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL 247
                       R++VSWNSMI  YAK G++  AREIF++ML+++  SW+ MI GY    
Sbjct: 237 ------------RDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHR 284

Query: 248 DMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLE-------------LALD----- 285
           D +EA NLF +M      PD ++    VS  +Q+G L+             + LD     
Sbjct: 285 DSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQT 344

Query: 286 -----------------FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
                             F  MP++N+VSWN MI G   N   + A++ F QM++E    
Sbjct: 345 ALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPM 404

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARII 386
           D   F  +L   S    +  G+ I   +     + P +     L+ +  R G + + + I
Sbjct: 405 DDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNI 464

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            + M +  N   W +++  C  H   T A
Sbjct: 465 IQSMPMKPNAALWGSLLLACRIHQNVTLA 493


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 198/613 (32%), Positives = 323/613 (52%), Gaps = 67/613 (10%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISS---------------RGSGFLEEARYLFDI---- 54
           ARKLFDE+    + SWN MI  Y +S                G  + +   Y F I    
Sbjct: 75  ARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG 134

Query: 55  ---MPE---------------RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNA 96
              +PE                D    N++++ Y   GEME A R+F+ M  R +VSWN 
Sbjct: 135 DYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNT 194

Query: 97  MISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRC 152
           MI+G+ +NG V  A+  FD M G+    D A++ +++       EL+   RV      + 
Sbjct: 195 MINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVK- 253

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
           + GED +  +N+L+  Y + G ++EA+ +F ++             KR++VSW +M+  Y
Sbjct: 254 NLGED-ISVWNSLLDMYAKCGNMDEAQMIFYEMD------------KRDVVSWTTMMNGY 300

Query: 213 AKAGDVVSAREIFEQMLERDTFSWN-----TMISGYIHVLDMEEASNL----FVKMPHPD 263
              GD  SA  +  QM++ ++   N     +++S    +  ++    L      +    +
Sbjct: 301 ILNGDARSAL-LLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESE 359

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
            +   A++  YA+  N+ L+   F +  ++    WN++I+GC  N     AI+LF QM +
Sbjct: 360 VIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLM 419

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVE 382
           E   P+  T +S+L   + + DL     +H  + ++  +  + +   LI +Y++CG++  
Sbjct: 420 EAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLES 479

Query: 383 ARIIFEEM-KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
           A  IF  + K  K++++W+A+I G   HG    A+ LF  M    V P  ITF S+L AC
Sbjct: 480 AHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHAC 539

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
           +HAGLV+EG   FK M+ +  +  R +H+  ++D++GR GRLE+A +LI+ M F P+ AV
Sbjct: 540 SHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAV 599

Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
           WGALLG+C +H NVEL +VAA+ L ++EP N+  YVLL N+Y+ VGRW DA  VRL+M +
Sbjct: 600 WGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNN 659

Query: 562 NNIKKPTGYSWVD 574
             ++K   +S ++
Sbjct: 660 IGLRKTPAHSLIE 672



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 143/547 (26%), Positives = 235/547 (42%), Gaps = 108/547 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           +++ Y+   EM  AR++FD M +R +VSWN MI+GY     +G ++EA  +FD M     
Sbjct: 164 LMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFK---NGCVKEALMVFDWMIGKGI 220

Query: 57  ERDCVT-----------------------------------WNTVISGYAKTGEMEEALR 81
           E DC T                                   WN+++  YAK G M+EA  
Sbjct: 221 EPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQM 280

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           +F  M  R+VVSW  M++G++ NGD  +A+     M         ++    +        
Sbjct: 281 IFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMM------QFESVKPNFVT------L 328

Query: 142 ARVLVKCGS-------RCDGG-------EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV 187
           A VL  C S       RC  G       E  V     LI  Y +   V  + ++F K   
Sbjct: 329 ASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXS- 387

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGY 243
                      K+    WN++I      G    A E+F+QML    + +  + N+++  Y
Sbjct: 388 -----------KQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAY 436

Query: 244 IHVLDMEEASNLFVKMPHPDTLT----WNAMVSGYAQIGNLELALDFFKRMPQ--KNLVS 297
             + D+++A N+   +     L+       ++  Y++ G+LE A + F  +P+  K++++
Sbjct: 437 AFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIIT 496

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQM 355
           W+++IAG   +   E AI LF QM   G KP+  TF+SIL   S  G+VD  LG+    +
Sbjct: 497 WSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFML 556

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
               +         +I +  R G + EA  +   M    N   W A++G C  H    E 
Sbjct: 557 EDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIH----EN 612

Query: 416 LELFKSMRS--FKVLP----TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           +EL +      F++ P     Y+   ++ SA           +H + M+N  G+     H
Sbjct: 613 VELGEVAAKWLFELEPGNTGNYVLLANIYSAVGR----WRDAEHVRLMMNNIGLRKTPAH 668

Query: 470 FASLVDI 476
             SL+++
Sbjct: 669 --SLIEV 673


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 204/633 (32%), Positives = 322/633 (50%), Gaps = 74/633 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR--DVVSWNVMISGYISSRGSGFLEEARYLF------ 52
           ++  Y+   E+  AR +FD+MP R  +VV WN++I  Y     +G  EEA  L+      
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAY---AWNGPYEEAIDLYYKMLGY 113

Query: 53  DIMPER---------------------------------DCVTWNTVISGYAKTGEMEEA 79
            I P R                                 +      ++  YAK G +++A
Sbjct: 114 GITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDA 173

Query: 80  LRLFNSMPARNVVSWNAMISGF-LQNGDVANAIEFFDRMPGR---DSASLSALVSGLIQN 135
             +F+ M  R+VV+WN+MISGF L  G          +M      +S+++  ++  + Q 
Sbjct: 174 KEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQV 233

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
             L     +   C  R   G D+V     L V YG+   ++ AR++FD + +        
Sbjct: 234 NSLRHGKEIHGFCVRRGFVG-DVVVGTGILDV-YGKCQCIDYARRIFDMMGI-------- 283

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ--MLERDTF-----SWNTMISGYIHVLD 248
               +N V+W++M+  Y     +  A E+F Q  ML+ D       +  T+I    ++ D
Sbjct: 284 ---VKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTD 340

Query: 249 MEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           +   + L           D +  N ++S YA+ G +  A+ FF  M  ++ VS+ ++I+G
Sbjct: 341 LSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISG 400

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPD 363
              N + E  +++F++MQ+ G  P++ T +S+L   + +  LH G   H   +      D
Sbjct: 401 YVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTAD 460

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
             I NALI MYA+CG I  AR +F+ M   + +VSWN MI     HG   EAL LF +M+
Sbjct: 461 TMICNALIDMYAKCGKIDTARKVFDRMHK-RGIVSWNTMIIAYGIHGIGLEALLLFDNMQ 519

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
           S  + P  +TFI ++SAC+H+GLV EG+  F +M  ++GI PR+EH+A +VD++ R G  
Sbjct: 520 SEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLF 579

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
           ++    I+ MP EPD  VWGALL ACRV+ NVEL +  ++ + K+ PE++  +VLL NMY
Sbjct: 580 KEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMY 639

Query: 544 ADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           + VGRWDDA +VR   K    +K  G SW++ S
Sbjct: 640 SAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEIS 672



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 111/454 (24%), Positives = 204/454 (44%), Gaps = 39/454 (8%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR--NVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           V +  ++  Y    E++ A  +F+ MP R  NVV WN +I  +  NG    AI+ + +M 
Sbjct: 52  VPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKML 111

Query: 119 GR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
           G     +  +   ++       E  E     + C  +    E  V     L+  Y + G 
Sbjct: 112 GYGITPNRFTFPFVLKACSALKEASEGRE--IHCDIKRLRLESNVYVSTALVDFYAKCGC 169

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA-KAGDVVSAREIFEQMLERDT 233
           +++A+++FDK+             KR++V+WNSMI  ++   G       +  QM + D 
Sbjct: 170 LDDAKEVFDKM------------HKRDVVAWNSMISGFSLHEGSYDEVARLLVQM-QNDV 216

Query: 234 FSWNTMISGYIHVLDM-------EEASNLFVKMPH-PDTLTWNAMVSGYAQIGNLELALD 285
              ++ I G +  +         +E     V+     D +    ++  Y +   ++ A  
Sbjct: 217 SPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARR 276

Query: 286 FFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP---DRHTFSSILSMSS 341
            F  M   KN V+W++M+           A++LF Q+ +  +        T ++++ + +
Sbjct: 277 IFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCA 336

Query: 342 GIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            + DL  G  +H    K+  + D+ + N L++MYA+CG I  A   F EM  L++ VS+ 
Sbjct: 337 NLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMD-LRDAVSFT 395

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH-AGLVEEGRQHFKSMVN 459
           A+I G   +G + E L +F  M+   + P   T  SVL ACAH AGL      H  +++ 
Sbjct: 396 AIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIIC 455

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
            +  +  I +  +L+D+  + G+++ A  +   M
Sbjct: 456 GFTADTMICN--ALIDMYAKCGKIDTARKVFDRM 487



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 15/201 (7%)

Query: 346 LHLGMQIHQMVTKTVIP---------DVPINNALITMYARCGAIVEARIIFEEM-KLLKN 395
           L  G  IHQ + K +           DVP    L+ +Y  C  +  AR +F++M    KN
Sbjct: 25  LFRGKLIHQHLLKCLHRTHETNLTNFDVPFEK-LVDLYIACSELKIARHVFDKMPHRPKN 83

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           VV WN +I   A +G   EA++L+  M  + + P   TF  VL AC+      EGR+   
Sbjct: 84  VVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGRE-IH 142

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
             +    +E  +    +LVD   + G L+DA ++   M  + D   W +++    +H   
Sbjct: 143 CDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKM-HKRDVVAWNSMISGFSLHEGS 201

Query: 516 --ELAQVAAEALMKVEPENST 534
             E+A++  +    V P +ST
Sbjct: 202 YDEVARLLVQMQNDVSPNSST 222


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 194/633 (30%), Positives = 325/633 (51%), Gaps = 84/633 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           +++ YV+   +  A KLFDEMPQ + +S+  +  GY  SR   F +   ++  I  E   
Sbjct: 76  LLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGY--SRDHQFHQALHFILRIFKEGHE 133

Query: 58  -----------------------------------RDCVTWNTVISGYAKTGEMEEALRL 82
                                               D      +I  Y+  G ++ A  +
Sbjct: 134 VNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHV 193

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAA 142
           F+ +  +++VSW  M++ + +N     +++ F++M        +  +SG +++    EA 
Sbjct: 194 FDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAF 253

Query: 143 RV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
            V   +  C  +     DL      L+  Y + G + +A++LF+++P            K
Sbjct: 254 NVGKSVHGCALKGCYDHDLFVGI-ALLELYAKSGEIIDAQRLFEEMP------------K 300

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISG-----------YI 244
            +++ W+ MI  YA++     A ++F +M +     + F++ +++              I
Sbjct: 301 TDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQI 360

Query: 245 H--VLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
           H  VL     SN+FV          NA++  YA+ G +E ++  F+ +P +N V+WN++I
Sbjct: 361 HSCVLKFGLNSNVFVS---------NAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTII 411

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI- 361
            G     D E A+ LF  M     +P   T+SS+L  S+ +  L  G+QIH +  KT+  
Sbjct: 412 VGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYN 471

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
            D  + N+LI MYA+CG I +AR+ F++M   ++ VSWNAMI G + HG + EAL LF  
Sbjct: 472 KDTVVANSLIDMYAKCGRINDARLTFDKMNK-RDEVSWNAMICGYSMHGMSMEALNLFDM 530

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M+     P  +TF+ VLSAC++AGL+ +G+ HF+SM  +Y I+P IEH+  +V ++GR G
Sbjct: 531 MQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLG 590

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
           R ++AM LI  + ++P   VW ALLGAC +H  V+L +V A+ ++++EP +   +VLL N
Sbjct: 591 RFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSN 650

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           MYA  GRWD+   VR  M+   ++K  G SWV+
Sbjct: 651 MYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVE 683



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 132/473 (27%), Positives = 217/473 (45%), Gaps = 42/473 (8%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM- 117
           D    N +++ Y ++  +++A +LF+ MP  N +S+  +  G+ ++     A+ F  R+ 
Sbjct: 69  DLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIF 128

Query: 118 -------PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG 170
                  P   +  L  LVS      +L      L  C  +     D       LI  Y 
Sbjct: 129 KEGHEVNPFVFTTLLKLLVS-----MDLAHLCWTLHACVYKLGHHADAFVG-TALIDAYS 182

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
            RG V+ AR +FD I              +++VSW  M+ CYA+      + ++F QM  
Sbjct: 183 VRGNVDVARHVFDDICC------------KDMVSWTGMVACYAENCFYEESLQLFNQMRI 230

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPH---------PDTLTWNAMVSGYAQIGNLE 281
                 N  ISG +      EA N+  K  H          D     A++  YA+ G + 
Sbjct: 231 MGYKPNNFTISGALKSCLGLEAFNVG-KSVHGCALKGCYDHDLFVGIALLELYAKSGEII 289

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A   F+ MP+ +L+ W+ MIA    +   + A+ LF++M+     P+  TF+S+L   +
Sbjct: 290 DAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACA 349

Query: 342 GIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
             V L LG QIH  V K  +  +V ++NA++ +YA+CG I  +  +FEE+   +N V+WN
Sbjct: 350 SSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELP-DRNDVTWN 408

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVN 459
            +I G    G    A+ LF  M    + PT +T+ SVL A A    +E G Q H  ++  
Sbjct: 409 TIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKT 468

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
            Y  +  + +  SL+D+  + GR+ DA      M  + D+  W A++    +H
Sbjct: 469 MYNKDTVVAN--SLIDMYAKCGRINDARLTFDKMN-KRDEVSWNAMICGYSMH 518



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/431 (26%), Positives = 207/431 (48%), Gaps = 30/431 (6%)

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
           M +R +V  +  +S  L        I     +   DS S + ++  +I+NG  D  A   
Sbjct: 1   MISRTIVRDSTKLSQLLHQ---CRNIHHQQCLSALDSHSYAHMLQQIIRNGA-DPIAGKH 56

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
           + C     G    + A N L+  Y Q   +++A KLFD++P            + N +S+
Sbjct: 57  LHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMP------------QTNTISF 104

Query: 206 NSMIMCYAKAGDVVSARE----IFEQMLERDTFSWNTMISGYIHVLDMEE-----ASNLF 256
            ++   Y++      A      IF++  E + F + T++   +  +D+        + ++
Sbjct: 105 VTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLV-SMDLAHLCWTLHACVY 163

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
               H D     A++  Y+  GN+++A   F  +  K++VSW  M+A    N  YE +++
Sbjct: 164 KLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQ 223

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYA 375
           LF QM++ G KP+  T S  L    G+   ++G  +H    K     D+ +  AL+ +YA
Sbjct: 224 LFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYA 283

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           + G I++A+ +FEEM    +++ W+ MI   A    + EAL+LF  MR   V+P   TF 
Sbjct: 284 KSGEIIDAQRLFEEMP-KTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFA 342

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           SVL ACA +  ++ G+Q   S V ++G+   +    +++D+  + G +E++M L + +P 
Sbjct: 343 SVLQACASSVSLDLGKQ-IHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPD 401

Query: 496 EPDKAVWGALL 506
             D   W  ++
Sbjct: 402 RND-VTWNTII 411


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 211/630 (33%), Positives = 318/630 (50%), Gaps = 76/630 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--R 58
           +I  Y    ++  A  LF   P    V+   +++ Y ++   G L  A   FD +P+  R
Sbjct: 65  LIHLYTLSGDLPAAATLFRADPCP--VAATSLVAAYAAA---GRLPAAVSFFDAVPQARR 119

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV-----SWNAMIS--GFLQNGDVANAI 111
           D V  N VIS YA+      A+ +F S+ A   +     S+ A++S  G L N  V +  
Sbjct: 120 DTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCA 179

Query: 112 EFFDRMPGRDSA---SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           +    +    +    S+S  +  L    E  EA R   K        + L   + T++VG
Sbjct: 180 QLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALT--WTTMVVG 237

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y +RG V  AR +F+++ V  D            V WN+MI  Y  +G VV A E+F +M
Sbjct: 238 YVRRGDVGAARSVFEEVDVKFD------------VVWNAMISGYVHSGMVVEAFELFRRM 285

Query: 229 -LER---DTFSW---------------------------------------NTMISGYIH 245
            LER   D F++                                       N +++ Y  
Sbjct: 286 VLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSK 345

Query: 246 VLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
             ++  A  +F  M   D ++WN ++SGY +   L+ A++ F+ MP KN +SW  M++G 
Sbjct: 346 CGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGY 405

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDV 364
                 E A+KLF +M+ E  KP  +T++  +S    +  L  G Q+H  +V        
Sbjct: 406 VHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSN 465

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
              NALITMYARCGA+ EA ++F  M  + +V SWNAMI     HG   EALELF  M +
Sbjct: 466 SAGNALITMYARCGAVKEANLMFLVMPNIDSV-SWNAMISALGQHGHGREALELFDRMVA 524

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
             + P  I+F++VL+AC H+GLV+EG Q+F+SM  ++GI P  +H+  L+D++GR GR+ 
Sbjct: 525 EGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIG 584

Query: 485 DAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
           +A DLIK MPFEP  ++W A+L  CR   ++EL   AA+ L K+ P++   Y+LL N Y+
Sbjct: 585 EARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYS 644

Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             GRW DA  VR LM+   +KK  G SW++
Sbjct: 645 AAGRWVDAARVRKLMRDRGVKKEPGCSWIE 674


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 173/523 (33%), Positives = 284/523 (54%), Gaps = 55/523 (10%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D V+WN++++GY + G +EEA  +++ MP R++++ N+MI  F   G V  A + FD M 
Sbjct: 278 DSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEML 337

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLV---KCGSRCD---GGEDLVRAYNTLIVGYGQR 172
            +D  + SAL++   QN   +EA R  V   K G   D       L    N L+V  G  
Sbjct: 338 EKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG-- 395

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
                  KL   + +     E  +  +      N++I  Y+K GD++ AR++F++    D
Sbjct: 396 -------KLIHSLSLKIGT-ESYINLQ------NALIYMYSKCGDIMVARKLFDEAYLLD 441

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
             SWN+MISGY+    ++ A  +F  MP  D ++W++M+SGYAQ                
Sbjct: 442 LISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQ---------------- 485

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
                          N  ++  + LF +MQ+ G KPD  T  S++S  + +  L  G  +
Sbjct: 486 ---------------NDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWV 530

Query: 353 HQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H  + +  +  +V +   LI MY +CG +  A  +F  M + K + +WNA+I G A +G 
Sbjct: 531 HAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNALILGLAMNGL 589

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
              +L++F +M+   V P  ITF+ VL AC H GLV+EG+ HF SM++++ I+P ++H+ 
Sbjct: 590 VESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYG 649

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            +VD++GR G+L++A +L+  MP  PD A WGALLGAC+ H + E+ +     L++++P+
Sbjct: 650 CMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPD 709

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +   +VLL N+YA  G+WDD  E+R +M  + + K  G S ++
Sbjct: 710 HDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIE 752



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/461 (27%), Positives = 208/461 (45%), Gaps = 74/461 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+ +     M  A ++F+E    D VSWN +++GYI     G +EEA++++  MPER  
Sbjct: 254 LINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEI---GNVEEAKHIYHQMPERSI 310

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           +  N++I  +   G + EA +LF+ M  +++V+W+A+I+ F QN     AI  F  M   
Sbjct: 311 IASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGM--- 367

Query: 121 DSASLSALVSGLIQNGELDEAARVLV-------KCGSRCDGGEDLVRAYNTLIVGYGQRG 173
               +  +V  ++    L   A +LV          S   G E  +   N LI  Y + G
Sbjct: 368 --HKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCG 425

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
            +  ARKLFD+             +  +++SWNSMI  Y K   V +A+ IF+ M E+D 
Sbjct: 426 DIMVARKLFDE------------AYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDV 473

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSG---------------- 273
            SW++MISGY      +E   LF +M      PD  T  +++S                 
Sbjct: 474 VSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAY 533

Query: 274 -------------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
                              Y + G +E AL+ F  M +K + +WN++I G   N   E +
Sbjct: 534 IKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESS 593

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSS--GIVD---LHLGMQIHQMVTKTVIPDVPINNA 369
           + +F  M+     P+  TF  +L      G+VD    H    IH      + P+V     
Sbjct: 594 LDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHD---HKIQPNVKHYGC 650

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           ++ +  R G + EA  +   M +  +V +W A++G C  HG
Sbjct: 651 MVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHG 691



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 173/340 (50%), Gaps = 33/340 (9%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  ++   N++I C++   ++  A  +F +    D+ SWN++++GYI + ++EEA +++ 
Sbjct: 244 FDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYH 303

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           +MP    +  N+M+  +   G +  A   F  M +K++V+W+++IA  + N+ YE AI+ 
Sbjct: 304 QMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRT 363

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYAR 376
           F+ M   G   D     S LS  + ++ +++G  IH +  K      + + NALI MY++
Sbjct: 364 FVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSK 423

Query: 377 CGAIVEARIIFEEMKLL------------------------------KNVVSWNAMIGGC 406
           CG I+ AR +F+E  LL                              K+VVSW++MI G 
Sbjct: 424 CGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGY 483

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
           A +    E L LF+ M+     P   T +SV+SACA    +E+G+    + +   G+   
Sbjct: 484 AQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKW-VHAYIKRNGLTIN 542

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +    +L+D+  + G +E A+++  GM  E   + W AL+
Sbjct: 543 VILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNALI 581



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 158/338 (46%), Gaps = 41/338 (12%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDV 107
           AR LFD     D ++WN++ISGY K   ++ A  +F+SMP ++VVSW++MISG+ QN   
Sbjct: 430 ARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLF 489

Query: 108 ANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN 163
              +  F  M       D  +L +++S   +   L++     V    + +G    V    
Sbjct: 490 DETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGK--WVHAYIKRNGLTINVILGT 547

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
           TLI  Y + G VE A ++F  +             ++ I +WN++I+  A  G V S+ +
Sbjct: 548 TLIDMYMKCGCVETALEVFYGM------------IEKGISTWNALILGLAMNGLVESSLD 595

Query: 224 IFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGY 274
           +F  M    +  +  ++  ++    H+  ++E  + F  M H     P+   +  MV   
Sbjct: 596 MFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLL 655

Query: 275 AQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKL---FIQMQVEGEKPDR 330
            + G L+ A +   RMP   ++ +W +++  C+ + D E   ++    I++Q     PD 
Sbjct: 656 GRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQ-----PDH 710

Query: 331 HTFSSILS---MSSGIVDLHLGMQIHQMVTKTVIPDVP 365
             F  +LS    S G  D  L  +I  M+TK  +  +P
Sbjct: 711 DGFHVLLSNIYASKGKWDDVL--EIRGMMTKHRVLKIP 746


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 197/637 (30%), Positives = 324/637 (50%), Gaps = 82/637 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--R 58
           +I  Y K   +  AR LFD++P+ D+V+   M+S Y     +G ++ A  LF+  P   R
Sbjct: 37  LIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAY---SAAGNIKLAHQLFNATPMSIR 93

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPAR----------------------------- 89
           D V++N +I+ ++ + +   AL+LF  M                                
Sbjct: 94  DTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQL 153

Query: 90  --NVVSW---------NAMISGFLQNGD---------VANAIEFFDRMPG--RDSASLSA 127
              V  W         NA++S ++             +A A + FD  P   RD  + + 
Sbjct: 154 HCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTT 213

Query: 128 LVSGLIQNGELDEAARVLVKCGSRCDGGED-LVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
           +++G ++N +L  A  +L       +G  D +  A+N +I GY  RG  EEA  L  ++ 
Sbjct: 214 IIAGYVRNDDLVAARELL-------EGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRM- 265

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW--------NT 238
                   ++  + +  ++ S+I   + AG     R++   +L               N 
Sbjct: 266 -------HSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNA 318

Query: 239 MISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
           +I+ Y     + EA  +F KMP  D ++WNA++SG      +E A   F+ MP ++L++W
Sbjct: 319 LITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTW 378

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVT 357
             MI+G   N   E  +KLF QM++EG +P  + ++  ++  S +  L  G Q+H Q++ 
Sbjct: 379 TVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQ 438

Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
                 + + NALITMY+RCG +  A  +F  M  + +V SWNAMI   A HG   +A++
Sbjct: 439 LGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSV-SWNAMIAALAQHGHGVQAIQ 497

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           L++ M    +LP  ITF+++LSAC+HAGLV+EGR +F +M   YGI P  +H++ L+D++
Sbjct: 498 LYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLL 557

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
            R G   +A ++ + MPFEP   +W ALL  C +H N+EL   AA+ L+++ P+    Y+
Sbjct: 558 CRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYI 617

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            L NMYA +G+WD+   VR LM+   +KK  G SW++
Sbjct: 618 SLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIE 654



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 127/499 (25%), Positives = 207/499 (41%), Gaps = 137/499 (27%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N LI  Y +   +  AR LFDKIP            K +IV+  +M+  Y+ AG++  A 
Sbjct: 35  NRLIDHYCKSFNIPYARYLFDKIP------------KPDIVAATTMLSAYSAAGNIKLAH 82

Query: 223 EIFEQ--MLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW--------- 267
           ++F    M  RDT S+N MI+ + H  D   A  LFV+M      PD  T+         
Sbjct: 83  QLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSL 142

Query: 268 ---------------------------NAMVSGYAQIGNLEL---------ALDFFKRMP 291
                                      NA++S Y    +  L         A   F   P
Sbjct: 143 IADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAP 202

Query: 292 --QKNLVSWNSMIAGCETNKD-------------------------------YEGAIKLF 318
             +++  +W ++IAG   N D                               YE A  L 
Sbjct: 203 PGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLL 262

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-----VPINNALITM 373
            +M   G + D +T++S++S +S     ++G Q+H  V +TV+       + +NNALIT+
Sbjct: 263 RRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITL 322

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC--------------------------- 406
           Y RCG +VEAR +F++M  +K++VSWNA++ GC                           
Sbjct: 323 YTRCGKLVEARRVFDKMP-VKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVM 381

Query: 407 ----ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
               A +GF  E L+LF  M+   + P    +   +++C+  G ++ G+Q   S + + G
Sbjct: 382 ISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQ-LHSQIIQLG 440

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
            +  +    +L+ +  R G +E A  +   MP+  D   W A++ A   H +   A    
Sbjct: 441 HDSSLSVGNALITMYSRCGLVEAADTVFLTMPY-VDSVSWNAMIAALAQHGHGVQAIQLY 499

Query: 523 EALMK--VEPENSTPYVLL 539
           E ++K  + P+  T   +L
Sbjct: 500 EKMLKEDILPDRITFLTIL 518



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 157/365 (43%), Gaps = 90/365 (24%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           FK   +  N +I  Y K+ ++  AR +F+++ + D  +  TM+S Y    +++ A  LF 
Sbjct: 27  FKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFN 86

Query: 258 KMPHP--DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
             P    DT+++NAM++ ++                                + D   A+
Sbjct: 87  ATPMSIRDTVSYNAMITAFSH-------------------------------SHDGHAAL 115

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG-MQIHQMVTKTVIPDVP-INNALITM 373
           +LF+QM+  G  PD  TFSS+L   S I D      Q+H  V K     VP + NAL++ 
Sbjct: 116 QLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSC 175

Query: 374 YARCGA---------IVEARIIFEEM---------------------------KLLKNV- 396
           Y  C +         +  AR +F+E                            +LL+ + 
Sbjct: 176 YVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMT 235

Query: 397 ----VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
               V+WNAMI G    GF  EA +L + M S  +     T+ SV+SA ++AGL   GRQ
Sbjct: 236 DHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQ 295

Query: 453 HFKSMVNEYGIEPRIE---HFA-----SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
                V+ Y +   ++   HF      +L+ +  R G+L +A  +   MP + D   W A
Sbjct: 296 -----VHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVK-DLVSWNA 349

Query: 505 LLGAC 509
           +L  C
Sbjct: 350 ILSGC 354


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 198/616 (32%), Positives = 324/616 (52%), Gaps = 60/616 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF----DIMP 56
           +++ Y     +A AR  FD +  RDV +WN+MISGY  +  S  +     LF     + P
Sbjct: 92  LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTP 151

Query: 57  E--------RDCVT-----------------WNTVISG-----YAKTGEMEEALRLFNSM 86
           +        + C T                 W+  ++      Y++   +  A  LF+ M
Sbjct: 152 DYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEM 211

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLV 146
           P R++ SWNAMISG+ Q+G+   A+   + +   DS ++ +L+S   + G+ +    V +
Sbjct: 212 PVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRG--VTI 269

Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
              S   G E  +   N LI  Y + GR+ + +K+FD++ V            R+++SWN
Sbjct: 270 HSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYV------------RDLISWN 317

Query: 207 SMIMCYAKAGDVVSAREIFEQM-LERDTFSWNTMIS--------GYIHVLDMEEASNLFV 257
           S+I  Y      + A  +F++M L R      T+IS        G I      +   L  
Sbjct: 318 SIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRK 377

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                D    NA+V  YA++G ++ A   F  +P  +++SWN++I+G   N     AI++
Sbjct: 378 GWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEM 437

Query: 318 FIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYA 375
           +  M+ EGE   ++ T+ S+L   S    L  GM++H +++   +  DV +  +L  MY 
Sbjct: 438 YNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYG 497

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +CG + +A  +F ++  + N V WN +I     HG   +A+ LFK M    V P +ITF+
Sbjct: 498 KCGRLEDALSLFYQIPRV-NSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFV 556

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           ++LSAC+H+GLV+EG+  F+ M  +YGI P ++H+  +VD+ GR G+LE A+  IK M  
Sbjct: 557 TLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSL 616

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           +PD ++WGALL ACRVH NV+L ++A+E L +VEPE+   +VLL NMYA  G+W+  +E+
Sbjct: 617 QPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEI 676

Query: 556 RLLMKSNNIKKPTGYS 571
           R +     ++K  G+S
Sbjct: 677 RSIAHGKGLRKTPGWS 692



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 51/294 (17%)

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
           +N+     ++  Y   G+V  AR  F+ +  RD ++WN MISGY    +  E    F   
Sbjct: 84  QNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLF 143

Query: 260 PHPDTLT--------------------------------WNAMV--------SGYAQIGN 279
                LT                                W+  V        S Y  +GN
Sbjct: 144 MLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGN 203

Query: 280 LELALDFFKRMPQKNLVSWNSMIAG-CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
             +    F  MP +++ SWN+MI+G C++     G  K  + +       D  T  S+LS
Sbjct: 204 ARI---LFDEMPVRDMGSWNAMISGYCQS-----GNAKEALTLSNGLRAMDSVTVVSLLS 255

Query: 339 MSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
             +   D + G+ IH    K  +  ++ ++N LI +YA  G + + + +F+ M  +++++
Sbjct: 256 ACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRM-YVRDLI 314

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
           SWN++I     +     A+ LF+ MR  ++ P  +T IS+ S  +  G +   R
Sbjct: 315 SWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACR 368


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 202/628 (32%), Positives = 316/628 (50%), Gaps = 77/628 (12%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGY---------------------------- 36
           Y+   ++  AR+LFDE+P   V+ WN +I  Y                            
Sbjct: 53  YLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTY 112

Query: 37  --ISSRGSGFL--------EEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSM 86
             +    SG L             +F +  E D      ++  YAK G + EA RLF+SM
Sbjct: 113 PFVLKACSGLLAIEDGVEIHSHAKMFGL--ESDVFVCTALVDFYAKCGILVEAQRLFSSM 170

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN-GELDEAARVL 145
             R+VV+WNAMI+G    G   +A++   +M        S+ + G++   GE        
Sbjct: 171 SHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGH-- 228

Query: 146 VKCGSRCDGGEDLVRAY-NTLIVG------YGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
                +   G  + R++ N ++VG      Y +   +  ARK+FD + V           
Sbjct: 229 ----GKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGV----------- 273

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-----SWNTMISGYIHVLDMEEAS 253
            RN VSW++MI  Y  +  +  A E+F+QM+ +D       +  +++     + D+    
Sbjct: 274 -RNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGR 332

Query: 254 NL---FVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            L    +K+    D L  N ++S YA+ G ++ A+ FF  M  K+ VS++++++GC  N 
Sbjct: 333 KLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNG 392

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINN 368
           +   A+ +F  MQ+ G  PD  T   +L   S +  L  G   H  ++ +    D  I N
Sbjct: 393 NAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICN 452

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           ALI MY++CG I  AR +F  M    ++VSWNAMI G   HG   EAL LF  + +  + 
Sbjct: 453 ALIDMYSKCGKISFAREVFNRMDR-HDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLK 511

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P  ITFI +LS+C+H+GLV EGR  F +M  ++ I PR+EH   +VDI+GR G +++A  
Sbjct: 512 PDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHH 571

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
            I+ MPFEPD  +W ALL ACR+H N+EL +  ++ +  + PE++  +VLL N+Y+  GR
Sbjct: 572 FIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGR 631

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           WDDA  +R+  K   +KK  G SW++ +
Sbjct: 632 WDDAAHIRITQKDWGLKKIPGCSWIEIN 659



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/484 (22%), Positives = 209/484 (43%), Gaps = 81/484 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGFLEE 47
           ++  Y K   + +A++LF  M  RDVV+WN MI+G              +  +  G    
Sbjct: 150 LVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPN 209

Query: 48  ARYLFDIMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
           +  +  ++P                       +   V    ++  YAK   +  A ++F+
Sbjct: 210 SSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFD 269

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS-----ASLSALVSGLIQNGELD 139
            M  RN VSW+AMI G++ +  +  A+E FD+M  +D+      +L +++    +  +L 
Sbjct: 270 VMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLS 329

Query: 140 EAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
              ++   ++K GS  D     +   NTL+  Y + G +++A + FD++           
Sbjct: 330 RGRKLHCYIIKLGSVLD-----ILLGNTLLSMYAKCGVIDDAIRFFDEMN---------- 374

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA 252
              ++ VS+++++    + G+   A  IF  M    ++ D  +   ++    H+  ++  
Sbjct: 375 --PKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432

Query: 253 ----SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
                 L V+    DTL  NA++  Y++ G +  A + F RM + ++VSWN+MI G   +
Sbjct: 433 FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIH 492

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-------TKTVI 361
                A+ LF  +   G KPD  TF  +LS  S     H G+ +   +         +++
Sbjct: 493 GLGMEALGLFHDLLALGLKPDDITFICLLSSCS-----HSGLVMEGRLWFDAMSRDFSIV 547

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
           P +     ++ +  R G I EA      M    +V  W+A++  C  H       E+ K 
Sbjct: 548 PRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKK 607

Query: 422 MRSF 425
           ++S 
Sbjct: 608 IQSL 611



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 113/221 (51%), Gaps = 13/221 (5%)

Query: 243 YIHVLD-------MEEASNL---FVK-MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           Y+H+L+       + EA  +   F+K   + D+   + +   Y     + LA   F  +P
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
             +++ WN +I     N  ++GAI L+  M   G +P+++T+  +L   SG++ +  G++
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 352 IHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           IH       +  DV +  AL+  YA+CG +VEA+ +F  M   ++VV+WNAMI GC+ +G
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLYG 189

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
              +A++L   M+   + P   T + VL     A  +  G+
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGK 230


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 195/591 (32%), Positives = 312/591 (52%), Gaps = 62/591 (10%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +++ Y SS   G L  AR +FD MP R+ VT N+++S  A+ G + +  RLF S+P R
Sbjct: 50  NTLLTAYASS---GLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQR 106

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSA---LVSGLIQNGEL--DEAARV 144
           + VS+NA+++GF + G  A A   +  +  RD A +      +SG++       D A   
Sbjct: 107 DAVSYNALLAGFSRAGAHARAAGAYVALL-RDEAGVRPSRITMSGVVMVASALGDRALGR 165

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
            V C     G        + L+  Y + G + +AR++FD++       EG     +N+V 
Sbjct: 166 QVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEM-------EG-----KNVVM 213

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP---- 260
            N+MI    +   V  AR +FE + ERD+ +W TM++G        EA ++F +M     
Sbjct: 214 CNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGV 273

Query: 261 -----------------------------------HPDTLTWNAMVSGYAQIGNLELALD 285
                                                +    +A+V  Y++  ++ LA  
Sbjct: 274 GIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEA 333

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F+RM  KN++SW +MI G   N   E A+++F +MQ +G KPD  T  S++S  + +  
Sbjct: 334 VFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLAS 393

Query: 346 LHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           L  G Q H + +   + P V ++NAL+T+Y +CG+I +A  +F+EM    + VSW A++ 
Sbjct: 394 LEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALVM 452

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           G A  G A E ++LF+ M S  V P  +TFI VLSAC+ +GLV++GR +F SM  ++ I 
Sbjct: 453 GYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIV 512

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           P  +H+  ++D+  R G L+ A + IK MP  PD   W  LL ACR+  ++E+ + AAE 
Sbjct: 513 PLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAEN 572

Query: 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           L+K++P+N   YVLL +M+A  G W+D  ++R  M+   +KK  G SW+ +
Sbjct: 573 LLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKY 623



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 139/290 (47%), Gaps = 36/290 (12%)

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           T+  NT+++ Y     +  A  +F  MP  + +T N+++S  A+ G +      F  +PQ
Sbjct: 46  TYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQ 105

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE--GEKPDRHTFSSILSMSSGIVDLHLGM 350
           ++ VS+N+++AG      +  A   ++ +  +  G +P R T S ++ ++S + D  LG 
Sbjct: 106 RDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGR 165

Query: 351 QIHQMVTKTVIPDVPINNA-LITMYARCGAIVEARIIFEEMK-------------LL--- 393
           Q+H  + +          + L+ MYA+ G I +AR +F+EM+             LL   
Sbjct: 166 QVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCK 225

Query: 394 --------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
                         ++ ++W  M+ G   +G  +EAL++F+ MR+  V     TF S+L+
Sbjct: 226 MVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILT 285

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG--RHGRLEDAM 487
           AC     +EEG+Q   + +     E  +   ++LVD+    R  RL +A+
Sbjct: 286 ACGALAALEEGKQ-IHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAV 334


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 202/628 (32%), Positives = 316/628 (50%), Gaps = 77/628 (12%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGY---------------------------- 36
           Y+   ++  AR+LFDE+P   V+ WN +I  Y                            
Sbjct: 53  YLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTY 112

Query: 37  --ISSRGSGFL--------EEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSM 86
             +    SG L             +F +  E D      ++  YAK G + EA RLF+SM
Sbjct: 113 PFVLKACSGLLAIEDGVEIHSHAKMFGL--ESDVFVCTALVDFYAKCGILVEAQRLFSSM 170

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN-GELDEAARVL 145
             R+VV+WNAMI+G    G   +A++   +M        S+ + G++   GE        
Sbjct: 171 SHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGH-- 228

Query: 146 VKCGSRCDGGEDLVRAY-NTLIVG------YGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
                +   G  + R++ N ++VG      Y +   +  ARK+FD + V           
Sbjct: 229 ----GKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGV----------- 273

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-----SWNTMISGYIHVLDMEEAS 253
            RN VSW++MI  Y  +  +  A E+F+QM+ +D       +  +++     + D+    
Sbjct: 274 -RNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGR 332

Query: 254 NL---FVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            L    +K+    D L  N ++S YA+ G ++ A+ FF  M  K+ VS++++++GC  N 
Sbjct: 333 KLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNG 392

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINN 368
           +   A+ +F  MQ+ G  PD  T   +L   S +  L  G   H  ++ +    D  I N
Sbjct: 393 NAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICN 452

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           ALI MY++CG I  AR +F  M    ++VSWNAMI G   HG   EAL LF  + +  + 
Sbjct: 453 ALIDMYSKCGKISFAREVFNRMDR-HDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLK 511

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P  ITFI +LS+C+H+GLV EGR  F +M  ++ I PR+EH   +VDI+GR G +++A  
Sbjct: 512 PDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHH 571

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
            I+ MPFEPD  +W ALL ACR+H N+EL +  ++ +  + PE++  +VLL N+Y+  GR
Sbjct: 572 FIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGR 631

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           WDDA  +R+  K   +KK  G SW++ +
Sbjct: 632 WDDAAHIRITQKDWGLKKIPGCSWIEIN 659



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 110/484 (22%), Positives = 207/484 (42%), Gaps = 81/484 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGFLEE 47
           ++  Y K   + +A++LF  M  RDVV+WN MI+G              +  +  G    
Sbjct: 150 LVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPN 209

Query: 48  ARYLFDIMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
           +  +  ++P                       +   V    ++  YAK   +  A ++F+
Sbjct: 210 SSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFD 269

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS-----ASLSALVSGLIQNGELD 139
            M  RN VSW+AMI G++ +  +  A+E FD+M  +D+      +L +++    +  +L 
Sbjct: 270 VMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLS 329

Query: 140 EAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
              ++   ++K G   D     +   NTL+  Y + G +++A + FD +           
Sbjct: 330 RGRKLHCYIIKLGXVLD-----ILLGNTLLSMYAKCGVIDDAIRFFDXMN---------- 374

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA 252
              ++ VS+++++    + G+   A  IF  M    ++ D  +   ++    H+  ++  
Sbjct: 375 --PKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432

Query: 253 ----SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
                 L V+    DTL  NA++  Y++ G +  A + F RM + ++VSWN+MI G   +
Sbjct: 433 FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIH 492

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-------TKTVI 361
                A+ LF  +   G KPD  TF  +LS  S     H G+ +   +         +++
Sbjct: 493 GLGMEALGLFHDLLALGLKPDDITFICLLSSCS-----HSGLVMEGRLWFDAMSRDFSIV 547

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
           P +     ++ +  R G I EA      M    +V  W+A++  C  H       E+ K 
Sbjct: 548 PRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKK 607

Query: 422 MRSF 425
           ++S 
Sbjct: 608 IQSL 611



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 113/221 (51%), Gaps = 13/221 (5%)

Query: 243 YIHVLD-------MEEASNL---FVK-MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           Y+H+L+       + EA  +   F+K   + D+   + +   Y     + LA   F  +P
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
             +++ WN +I     N  ++GAI L+  M   G +P+++T+  +L   SG++ +  G++
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 352 IHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           IH       +  DV +  AL+  YA+CG +VEA+ +F  M   ++VV+WNAMI GC+ +G
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLYG 189

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
              +A++L   M+   + P   T + VL     A  +  G+
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGK 230


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 195/632 (30%), Positives = 326/632 (51%), Gaps = 80/632 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-RGSGFLEEARYLFD--IMPE 57
           +++ Y K + +  A+K+FD MP+R+VVSW  +I+GY  + +G   LE    +    +MP+
Sbjct: 104 ILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPD 163

Query: 58  RDCVTWNTVISGYAKTGEMEEALRL----FNSMPARNVVSWNAMISGFLQNGDVANAIEF 113
           +   T+ ++I   +  G++    +L      S    ++++ NA+IS + ++  + +A++ 
Sbjct: 164 Q--FTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDV 221

Query: 114 FDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA--------YNTL 165
           F RM  RD  S  ++++G  Q G   EA          C   E L +         + ++
Sbjct: 222 FSRMATRDLISWGSMIAGFSQLGYELEAL---------CYFKEMLHQGVYLPNEFIFGSV 272

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF--KRNIVSWNSMIMCYAKAGDVVSARE 223
                   + E  R+L             +++F   R++ +  S+   YAK G +  AR 
Sbjct: 273 FSACSSLLQPEYGRQLHGM----------SIKFGLGRDVFAGCSLCDMYAKCGLLSCARV 322

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT------------- 266
           +F Q+   D  +WN +I+G+ +  D +EA   F +M H    PD +T             
Sbjct: 323 VFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSE 382

Query: 267 ----------------------WNAMVSGYAQIGNLELALDFFKRM-PQKNLVSWNSMIA 303
                                  N +++ YA+   L  A+ FF+ M    +LVSWN+++ 
Sbjct: 383 LYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILT 442

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-P 362
            C  +   E   +L   M +   +PD  T +++L  S+  V + +G Q+H    KT +  
Sbjct: 443 ACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNC 502

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           D  + N LI +YA+CG++  A  IF+ M +  +VVSW+++I G A  G+  EAL+LFK+M
Sbjct: 503 DTSVTNGLIDLYAKCGSLKTAHKIFDSM-INPDVVSWSSLILGYAQFGYGEEALKLFKTM 561

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
           R   V P ++TF+ VL+AC+H GLVEEG + + +M  E+GI P  EH + +VD++ R G 
Sbjct: 562 RRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGC 621

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           L +A   I  M F+PD  VW  LL AC+ H NV++ + AAE ++K++P NS  +VLL N+
Sbjct: 622 LNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNI 681

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           YA  G W+D   +R LMK   ++K  G SW++
Sbjct: 682 YASKGNWEDVARLRSLMKQRGVRKVPGQSWIE 713


>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
          Length = 590

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 187/562 (33%), Positives = 297/562 (52%), Gaps = 62/562 (11%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEAL 80
           D   WNV+I  +  S G     +A +L  +M E     D  + +  +   ++ G ++E  
Sbjct: 70  DPFLWNVVIKSH--SHGVD-PRKALFLLCLMLESSVPVDKFSLSLALKACSRLGFVKEGT 126

Query: 81  R----LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG 136
           +    L  +    ++   N +I  +++ G +  A + FDRMP RDS S            
Sbjct: 127 QVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVS------------ 174

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
                                    YN++I GY + G VE A +LFD +P          
Sbjct: 175 -------------------------YNSMIDGYVKCGLVESAGELFDLMP---------- 199

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
           R KRN+++WNSMI  YA+  D V  A ++F++M E+D  SWN+MI GY+    +E+A  L
Sbjct: 200 REKRNLITWNSMIGGYAQRADGVDVAEKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGL 259

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           F  MP  D +TW  M+ GY ++G + +A   F +MP +++V++NSM++G   N+ +  A+
Sbjct: 260 FNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGYVQNRYHMEAL 319

Query: 316 KLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITM 373
           ++F  M+ E    PD  +   +LS  + +  L   + +H  + +   P    +  ALI M
Sbjct: 320 EVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLSGKLGVALIDM 379

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           Y++CG+I  A  +FE ++  K++  WNAMIGG A HG    A ++   +    + P +IT
Sbjct: 380 YSKCGSIQHAMRVFEGIES-KSIDHWNAMIGGLAVHGLGESAFDMLFQIERRSIKPDHIT 438

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           F+ VL+AC+H+GLV+EG   F+ M  ++ IEPR++H+  +VDI+ R G ++ A +LI+GM
Sbjct: 439 FVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIKLARNLIEGM 498

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           P EP+  +W   L AC  H   E  ++ A+ L+     N + YVLL NMYA  G W D  
Sbjct: 499 PIEPNDVIWRTFLTACSHHKEFETGELVAKHLILXGGYNPSSYVLLSNMYASNGMWKDVR 558

Query: 554 EVRLLMKSNNIKKPTGYSWVDF 575
            VR +MK  NI+K  G SW++ 
Sbjct: 559 RVRTMMKEKNIEKIPGCSWIEL 580



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 169/331 (51%), Gaps = 39/331 (11%)

Query: 1   MISGYVKRRE-MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           MI GY +R + +  A KLFDEMP++D++SWN MI GY+     G +E+A+ LF++MP RD
Sbjct: 211 MIGGYAQRADGVDVAEKLFDEMPEKDLISWNSMIGGYVKH---GRIEDAKGLFNVMPRRD 267

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            VTW  +I GY K G +  A  LF+ MP R+VV++N+M+SG++QN     A+E F+ M  
Sbjct: 268 VVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGYVQNRYHMEALEVFNHMEK 327

Query: 120 R-----DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
                 D  SL  ++S + Q G L +A  +   +V+      G     +    LI  Y +
Sbjct: 328 ESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLSG-----KLGVALIDMYSK 382

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G ++ A ++F+ I              ++I  WN+MI   A  G   SA ++  Q+  R
Sbjct: 383 CGSIQHAMRVFEGIE------------SKSIDHWNAMIGGLAVHGLGESAFDMLFQIERR 430

Query: 232 ----DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLEL 282
               D  ++  +++   H   ++E    F  M       P    +  MV   A+ G+++L
Sbjct: 431 SIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIKL 490

Query: 283 ALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
           A +  + MP + N V W + +  C  +K++E
Sbjct: 491 ARNLIEGMPIEPNDVIWRTFLTACSHHKEFE 521


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 210/662 (31%), Positives = 326/662 (49%), Gaps = 103/662 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRD-VVSWNVMISGYISSRGSGFLEEARYLFDIMPE-- 57
           ++   +    +A+AR LFD+MP R+   S N M+SGY  SR SG L  A +LF   P   
Sbjct: 40  LLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGY--SR-SGQLSAAHHLFLSSPPHL 96

Query: 58  RDCVTWNTVISGYAKT--GEMEEALRLFNSM------PAR-------------------- 89
           RD VTW  +I  +A        +A+ LF  M      P R                    
Sbjct: 97  RDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAI 156

Query: 90  -----------------NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGL 132
                            NVV  N ++  + ++G +A A   F  MP RDS + +A++ G 
Sbjct: 157 IIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGC 216

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
            + G   EA  +      R  G       ++T++      G +   R++   +     R 
Sbjct: 217 SKEGSHAEALDLFA--AMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVA----RA 270

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY--------- 243
             +     N+   NS++  Y+K   +   +++F +M+ERD  S+N MI+GY         
Sbjct: 271 TSS-----NVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIV 325

Query: 244 ------IHVLDMEE-----ASNLFV--KMPH-----------------PDTLTWNAMVSG 273
                 +  L  +      AS L V   +PH                  + L  NA++  
Sbjct: 326 LRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDM 385

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           Y++ G L+ A   F     K  VSW +MI GC  N   E A++LF  M+  G  PDR TF
Sbjct: 386 YSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATF 445

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
           SS +  SS +  + LG Q+H  + ++  +  V   +AL+ MY +CG + EA   F+EM  
Sbjct: 446 SSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPE 505

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
            +N +SWNA+I   A +G A  A+++F+ M  +   P  +TF+SVLSAC+H GL EE  +
Sbjct: 506 -RNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMK 564

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           +F+ M  EYGI P  EH++ ++D +GR GR +   +++  MPFE D  +W ++L +CR H
Sbjct: 565 YFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTH 624

Query: 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
            N +LA+VAAE L  +   ++TPYV+L N++A  G+W+DA  V+ +M+   ++K TGYSW
Sbjct: 625 GNQDLARVAAEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSW 684

Query: 573 VD 574
           V+
Sbjct: 685 VE 686



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 174/375 (46%), Gaps = 68/375 (18%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N L+      GR+ +AR LFD++P            + N  S N M+  Y+++G + +A 
Sbjct: 38  NLLLHSLISSGRLAQARALFDQMP-----------HRNNAFSLNRMLSGYSRSGQLSAAH 86

Query: 223 EIFEQMLE--RDTFSWNTMISGYIH------------------------------VLDME 250
            +F       RD  +W  MI  +                                VL++ 
Sbjct: 87  HLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLP 146

Query: 251 EASN---------------LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
            AS                L + + H + +  N ++  Y + G L  A   F+ MP ++ 
Sbjct: 147 PASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDS 206

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           V++N+M+ GC     +  A+ LF  M+ +G    R TFS++L++++G+ DL LG Q+H +
Sbjct: 207 VTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGL 266

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
           V +    +V +NN+L+  Y++C  + E + +F EM + ++ VS+N MI G A +  A+  
Sbjct: 267 VARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEM-IERDNVSYNVMIAGYAWNRCASIV 325

Query: 416 LELFKSMRSF----KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
           L LF+ M+S     + LP Y + +SV  +  H G+   G+Q    +V   G+        
Sbjct: 326 LRLFREMQSLSFDRQALP-YASLLSVAGSVPHIGI---GKQIHAQLV-LLGLSSEDLVGN 380

Query: 472 SLVDIVGRHGRLEDA 486
           +L+D+  + G L+ A
Sbjct: 381 ALIDMYSKCGMLDAA 395


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 182/547 (33%), Positives = 297/547 (54%), Gaps = 46/547 (8%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L++AR +FD +P  +   +  +I+GY +   + +AL+LF+ M  R+VVSWN+MI G L  
Sbjct: 28  LDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDC 87

Query: 105 GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT 164
           G++  A   FD MP ++  S + +V+G ++ G ++ A R+ +      D     V A+N 
Sbjct: 88  GNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFL------DMHVKDVAAWNA 141

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           ++ GY + GRVEE  +LF+++PV            R+++SW SMI      G    A  +
Sbjct: 142 MVHGYFENGRVEEGVRLFEEMPV------------RDVISWTSMIGGLDLNGKSEEALFV 189

Query: 225 FEQMLER------DTFS-----------WNTMISGYIHVLDMEEASNLFVKMPHPDTLTW 267
           F++ML         TF+           +N  +  + HV+ +    + F+ +        
Sbjct: 190 FKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISV-------- 241

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
            ++++ YA    +E A   F     KN+V W +++     N  ++ A+++F  M   G  
Sbjct: 242 -SLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGAL 300

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARII 386
           P++ TFS  L    G+  L  G +IH M  K  +  DV + N+L+ MY  CG +  A  +
Sbjct: 301 PNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAV 360

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F  +   K++VSWN++I G A HGF   AL  F  M    V P  ITF  +LSAC+ +G+
Sbjct: 361 FRNINE-KDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGM 419

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           + +GR  F+ +        R +H+A +VDI+GR G+L++A +L++ MP + +  +W ALL
Sbjct: 420 LLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALL 479

Query: 507 GACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
            ACRVH+N+E+A+ AA+ ++ +EP  S+ YVLL N+YA  GRW D + +R+ MK   + K
Sbjct: 480 SACRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVK 539

Query: 567 PTGYSWV 573
             G SWV
Sbjct: 540 QPGSSWV 546



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 131/452 (28%), Positives = 207/452 (45%), Gaps = 58/452 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+GY +   +  A KLFD M  RDVVSWN MI G +     G L  A  LFD MPE++ 
Sbjct: 49  MIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDC---GNLGMATRLFDEMPEKNV 105

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++W T+++GY K G +E A RLF  M  ++V +WNAM+ G+ +NG V   +  F+ MP R
Sbjct: 106 ISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVR 165

Query: 121 DSASLSALVSGLIQNGELDEA-------------------ARVLVKC--------GSRCD 153
           D  S ++++ GL  NG+ +EA                   A VL  C        G +  
Sbjct: 166 DVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVH 225

Query: 154 GGEDLVRAYN------TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
           G    +  +       +LI  Y    ++E A K+F            N    +N+V W +
Sbjct: 226 GHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIF------------NETLTKNVVKWTA 273

Query: 208 MIMCYAKAGDVVSAREIFEQMLE------RDTFSWNTMISGYIHVLDM-EEASNLFVKMP 260
           ++  Y        A  +F  M +      + TFS        +  LD  +E   + +K+ 
Sbjct: 274 LLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLG 333

Query: 261 -HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
              D    N++V  Y + GN+  A+  F+ + +K++VSWNS+I G   +     A+  F 
Sbjct: 334 LETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFN 393

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT--KTVIPDVPINNALITMYARC 377
           QM   G  P+  TF+ +LS  S    L  G    + ++  K+ +        ++ +  RC
Sbjct: 394 QMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRC 453

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           G + EA  +   M +  N + W A++  C  H
Sbjct: 454 GKLDEAEELVRYMPVKANSMIWLALLSACRVH 485



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 121/250 (48%), Gaps = 40/250 (16%)

Query: 196 VRFKRNI-VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASN 254
            R+ R I +S+ + +  + K   +  AR IF+++   +   +  MI+GY     + +A  
Sbjct: 5   TRYTRTITLSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALK 64

Query: 255 LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
           LF +M   D ++WN+M+ G    GNL +A   F  MP+KN++SW +M+ G       E A
Sbjct: 65  LFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELA 124

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMY 374
            +LF+ M V+                                      DV   NA++  Y
Sbjct: 125 QRLFLDMHVK--------------------------------------DVAAWNAMVHGY 146

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
              G + E   +FEEM  +++V+SW +MIGG   +G + EAL +FK M    V PT+ TF
Sbjct: 147 FENGRVEEGVRLFEEMP-VRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTF 205

Query: 435 ISVLSACAHA 444
             VLSACA+A
Sbjct: 206 ACVLSACANA 215


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 204/654 (31%), Positives = 318/654 (48%), Gaps = 125/654 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           +I  Y++  ++    KLFD + Q+D V WNVM++GY      G L+     F +M     
Sbjct: 179 LIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKC---GALDSVIKGFSVMRMDQI 235

Query: 56  -PER---DCV------------------------------TWNTVISGYAKTGEMEEALR 81
            P     DCV                                N+++S Y+K G  ++A +
Sbjct: 236 SPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASK 295

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           LF  M   + V+WN MISG++Q+G +  ++ FF  M               I +G L +A
Sbjct: 296 LFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEM---------------ISSGVLPDA 340

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
                               +++L+    +   +E  ++      ++C     ++    +
Sbjct: 341 I------------------TFSSLLPSVSKFENLEYCKQ------IHCYIMRHSISL--D 374

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH---VLDMEEASNLFVK 258
           I   +++I  Y K   V  A+ IF Q    D   +  MISGY+H    +D  E     VK
Sbjct: 375 IFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVK 434

Query: 259 MP-HPDTLTW-----------------------------------NAMVSGYAQIGNLEL 282
           +   P+ +T                                     A++  YA+ G + L
Sbjct: 435 VKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNL 494

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A + F+R+ ++++VSWNSMI  C  + +   AI +F QM V G   D  + S+ LS  + 
Sbjct: 495 AYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACAN 554

Query: 343 IVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +     G  IH  M+  ++  DV   + LI MYA+CG +  A  +F+ MK  KN+VSWN+
Sbjct: 555 LPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKE-KNIVSWNS 613

Query: 402 MIGGCASHGFATEALELFKSM-RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           +I  C +HG   ++L LF  M     + P  ITF+ ++S+C H G V+EG + F+SM  +
Sbjct: 614 IIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTED 673

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           YGI+P+ EH+A +VD+ GR GRL +A + +K MPF PD  VWG LLGACR+H NVELA+V
Sbjct: 674 YGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEV 733

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A+  LM ++P NS  YVL+ N +A+   W+   +VR LMK   ++K  GYSW++
Sbjct: 734 ASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIE 787



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/474 (24%), Positives = 224/474 (47%), Gaps = 38/474 (8%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPAR--NVVSWNAMISGFLQNGDVANAIEFFDR 116
           D  T   ++  YA  G   +  ++F  +  R  ++  WN++IS F++NG +  A+ F+ +
Sbjct: 69  DSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFK 128

Query: 117 M----PGRDSASLSALVSGLI--QNGE-LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
           M       D ++   LV   +  +N + +D  +  +   G  C+   + V +  +LI  Y
Sbjct: 129 MLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCN---EFVAS--SLIKAY 183

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM- 228
            + G+++   KLFD++             +++ V WN M+  YAK G + S  + F  M 
Sbjct: 184 LEYGKIDVPSKLFDRV------------LQKDCVIWNVMLNGYAKCGALDSVIKGFSVMR 231

Query: 229 ---LERDTFSWNTMISGYIHVLDMEEASNL----FVKMPHPDTLTWNAMVSGYAQIGNLE 281
              +  +  +++ ++S     L ++    L     V     +    N+++S Y++ G  +
Sbjct: 232 MDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFD 291

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A   F+ M + + V+WN MI+G   +   E ++  F +M   G  PD  TFSS+L   S
Sbjct: 292 DASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVS 351

Query: 342 GIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
              +L    QIH  + +  I  D+ + +ALI  Y +C  +  A+ IF +   + +VV + 
Sbjct: 352 KFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSV-DVVVFT 410

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           AMI G   +G   ++LE+F+ +   K+ P  IT +S+L        ++ GR+     + +
Sbjct: 411 AMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRE-LHGFIIK 469

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
            G + R     +++D+  + GR+  A ++ + +  + D   W +++  C   +N
Sbjct: 470 KGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWNSMITRCAQSDN 522



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 111/258 (43%), Gaps = 41/258 (15%)

Query: 346 LHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV-SWNAMI 403
           L  G Q+H  ++  ++  D   +  ++ MYA CG+  +   +F  + L ++ +  WN++I
Sbjct: 51  LRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSII 110

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
                +G   +AL  +  M  F V P   TF  ++ AC  A    +G       V+  G+
Sbjct: 111 SSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACV-ALKNFKGIDFLSDTVSSLGM 169

Query: 464 EPRIEHFASLVDIVGRHGRLE---------------------------DAMD-LIKGMP- 494
           +      +SL+     +G+++                            A+D +IKG   
Sbjct: 170 DCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSV 229

Query: 495 -----FEPDKAVWGALLGACRVHNNVELA-QVAAEALMK-VEPENSTPYVLLYNMYADVG 547
                  P+   +  +L  C     ++L  Q+    ++  V+ E S    LL +MY+  G
Sbjct: 230 MRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLL-SMYSKCG 288

Query: 548 RWDDANEV-RLLMKSNNI 564
           R+DDA+++ R++ +++ +
Sbjct: 289 RFDDASKLFRMMSRADTV 306


>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 787

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 193/620 (31%), Positives = 323/620 (52%), Gaps = 64/620 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  +VK  ++  AR+LFD MP+R VVS+  M+   +  RGS  + +A  L+   P    
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMK-RGS--VRDAVELYRQCPLCSV 210

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPA-------------------------------- 88
             +  +I+G+      ++AL +F+ M +                                
Sbjct: 211 PFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGL 270

Query: 89  --------RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
                   +N+   N++I+ +L+ GD   A   FD M  RD  S +AL+    + G+L+ 
Sbjct: 271 AMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEG 330

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A RVL +   R +       ++ TL+  + Q+G  +EA  L+ ++  +  R         
Sbjct: 331 ARRVLDEMPERNE------VSWGTLVARHEQKGNAKEAVSLYSQMLADGCRP-------- 376

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMISGYIHVLDMEEASNLF 256
           NI  ++S++   A   D+ S R+I  Q L+     + F  + +I  Y     + +A  +F
Sbjct: 377 NISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIF 436

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
             +P  + + WN+++SGY+    +  A + FK+MP +N+ SWNS+I+G   N+ +  A+K
Sbjct: 437 YSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALK 496

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYA 375
            F  M   G+ P   TFSS+L   + +  L +G  +H  + K  I + + +  AL  MYA
Sbjct: 497 SFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYA 556

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           + G +  ++ +F EM   +N V+W AMI G A +GFA E++ LF+ M S  + P   TF+
Sbjct: 557 KSGDLDSSKRVFYEMPK-RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFL 615

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           ++L AC+H+GLVE    +F+ M+   GI P+ +H+  +VD++ R G L +A DL+  +  
Sbjct: 616 AILFACSHSGLVEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIES 674

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           + +   W ALL AC ++ N E+ + AA+ L +++ +N+  YVLL NMYA  G+W DA E+
Sbjct: 675 KSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEM 734

Query: 556 RLLMKSNNIKKPTGYSWVDF 575
           R+LMK  N+KK  G SWV  
Sbjct: 735 RILMKGINLKKDGGCSWVQI 754



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 186/449 (41%), Gaps = 118/449 (26%)

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
           AY+ ++  + + G +  AR+LFD +P            +R++VS+ +M+    K G V  
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMP------------ERSVVSYTTMVDALMKRGSVRD 197

Query: 221 AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTLTW------- 267
           A E++ Q        +  MI+G++     ++A  +F +M      P+  TL         
Sbjct: 198 AVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIG 257

Query: 268 ---------------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
                                      N++++ Y + G+ + A   F  M  +++VSW +
Sbjct: 258 AGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTA 317

Query: 301 MIAGCETNKDYEG-------------------------------AIKLFIQMQVEGEKPD 329
           ++       D EG                               A+ L+ QM  +G +P+
Sbjct: 318 LLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPN 377

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFE 388
              FSS+L   + + DL  G +IH    K     +V +++ALI MY +C  + +A++IF 
Sbjct: 378 ISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFY 437

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-------------------------R 423
            +   KN+V WN++I G +++    EA ELFK M                         +
Sbjct: 438 SLP-QKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALK 496

Query: 424 SFKVL------PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           SF  +      P  ITF SVL ACA    +E G+     ++ + GI+  I    +L D+ 
Sbjct: 497 SFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKII-KLGIKESIFVGTALSDMY 555

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            + G L+ +  +   MP   D A W A++
Sbjct: 556 AKSGDLDSSKRVFYEMPKRNDVA-WTAMI 583



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 153/336 (45%), Gaps = 23/336 (6%)

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPD 263
           +++ M+  + KAGD+VSAR +F+ M ER   S+ TM+   +    + +A  L+ + P   
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCS 209

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRM----PQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
              + AM++G+      + AL  F  M       N ++  S+I  C       GA +  +
Sbjct: 210 VPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKAC------IGAGEFDL 263

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHL----GMQIHQMVTKTVIPDVPINNALITMYA 375
            M + G     +     L + + ++ L+L         +M  +  + DV    AL+ +YA
Sbjct: 264 AMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYA 323

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
             G +  AR + +EM   +N VSW  ++      G A EA+ L+  M +    P    F 
Sbjct: 324 ELGDLEGARRVLDEMP-ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFS 382

Query: 436 SVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           SVL ACA    +  GR+ H +++  +      +   ++L+D+  +  +L DA  +   +P
Sbjct: 383 SVLGACASLQDLRSGRKIHNQTL--KMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP 440

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
            + +   W +L+      NN ++  V AE L K  P
Sbjct: 441 -QKNIVCWNSLISG--YSNNSKM--VEAEELFKKMP 471


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 192/551 (34%), Positives = 296/551 (53%), Gaps = 63/551 (11%)

Query: 67  ISGYAKTGEMEEALRLFNSM-PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
            S  +    +E A+ LFN   P  N+  +N MI GF  + + A  I  +  M    +   
Sbjct: 7   FSAVSHPENLELAILLFNHFTPYPNLYIFNTMILGFPFSNEKAFTI--YRSMLQNGTYPD 64

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDG---GEDLVRAYNTLIVGYGQRGRVEEARKLF 182
                 L+Q  +     +  + C +   G    E+ +R  N+LI  Y   G  E AR+LF
Sbjct: 65  RQTFLYLLQTTKFVAEVKQ-IHCHALVFGLLSKEEYLR--NSLIKRYVDNGCFECARQLF 121

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFS--- 235
           D++              RN+VS+N+MI+ +AK G+++   E+F  M    LE D F+   
Sbjct: 122 DEMS------------DRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLG 169

Query: 236 --------------------------------WNTMISGYIHVLDMEEASNLFVKMPHPD 263
                                           +N ++  Y+   +++ A  +F      D
Sbjct: 170 LLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKD 229

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
           T++WN +++GYA++G LELA D F ++P +++VSWNS+I+G   N DY     LF +M  
Sbjct: 230 TVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFA 289

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVE 382
           E  KPD+ T  +++S  + +  L  G  IH +  K +   +    +ALI MY +CG+I  
Sbjct: 290 ENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIER 349

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           A +IF ++   K+V +W  MI G A HGF  +ALELF  M++ +  P  +TF+SVL+AC+
Sbjct: 350 AFVIFNQIPE-KDVTTWTTMITGFAFHGFGNKALELFSVMQA-ETKPNDVTFVSVLAACS 407

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
           H+GLV+EG + F SM   Y IEP +EH+  LVD++ R GRL DA+ +I+ MP EP +++W
Sbjct: 408 HSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIW 467

Query: 503 GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
           GA+L ACR+H N+ELA+ A   L+K+EPE    Y+LL N+YA  GRW  ++ +R +M S 
Sbjct: 468 GAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSR 527

Query: 563 NIKKPTGYSWV 573
            +KK  G S V
Sbjct: 528 GVKKIAGCSSV 538



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 197/401 (49%), Gaps = 46/401 (11%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +I  Y+ +   G  E AR LFD M +R+ V++NT+I G+AK G +   L LF+ M + 
Sbjct: 102 NSLIKRYVDN---GCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSH 158

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL--------SALVSGLIQNGELDEA 141
            +   +  + G L         +    +  +   S+        +AL+   ++  EL  A
Sbjct: 159 GLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLA 218

Query: 142 ARVLVKCGSRCDGG-EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
            +V        DG  E    ++NT+I GY + G +E A  LF++IP             R
Sbjct: 219 RKVF-------DGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPT------------R 259

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA---S 253
           +IVSWNS+I  YA+ GD V+ + +F +M    ++ D  +   +IS    +  +++     
Sbjct: 260 DIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIH 319

Query: 254 NLFVKM-PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
            L VKM    +  + +A++  Y + G++E A   F ++P+K++ +W +MI G   +    
Sbjct: 320 GLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGN 379

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTK--TVIPDVPINN 368
            A++LF  MQ E  KP+  TF S+L+    SG+VD   G++I   + K  ++ P V    
Sbjct: 380 KALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVD--EGLKIFSSMKKRYSIEPGVEHYG 436

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            L+ +  R G +++A  + E+M +  +   W A++  C  H
Sbjct: 437 CLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMH 477



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 186/442 (42%), Gaps = 97/442 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS--GFLEEARYLFDIM--- 55
           +I  YV       AR+LFDEM  R+VVS+N MI G+ +  G+  G LE    LF  M   
Sbjct: 104 LIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGF-AKVGNILGILE----LFHDMRSH 158

Query: 56  ---PE---------------------------------RDCVTWNTVISGYAKTGEMEEA 79
              P+                                  + + +N ++  Y K  E++ A
Sbjct: 159 GLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLA 218

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELD 139
            ++F+    ++ VSWN +I+G+ + G++  A + F+++P RD  S ++L+SG  QNG+  
Sbjct: 219 RKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDY- 277

Query: 140 EAARVLVKCGSRCDGGE----DLVRAYNTLIVGYGQRGRVEEAR-------KLFDKIPVN 188
               V VKC       E    D V   N LI    + G +++ R       K+  KI   
Sbjct: 278 ----VTVKCLFTRMFAENVKPDKVTIVN-LISAVAEMGALDQGRWIHGLAVKMLTKIEA- 331

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                          S +++I  Y K G +  A  IF Q+ E+D  +W TMI+G+     
Sbjct: 332 --------------FSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGF 377

Query: 249 MEEASNLFVKM---PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
             +A  LF  M     P+ +T+ ++++  +  G ++  L  F  M ++  +       GC
Sbjct: 378 GNKALELFSVMQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGC 437

Query: 306 ETNKDYEG-----AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
             +          AI +  +M +E   P R  + ++LS       +H  M++ +     +
Sbjct: 438 LVDLLCRSGRLLDAIGVIEKMPME---PSRSIWGAVLSACR----MHRNMELAERALMEL 490

Query: 361 IPDVPINNA----LITMYARCG 378
           +   P        L  +YA CG
Sbjct: 491 LKLEPEKEGGYILLSNVYATCG 512


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 195/581 (33%), Positives = 310/581 (53%), Gaps = 69/581 (11%)

Query: 47  EARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGD 106
           +A  + D++PE +  +++T+I  ++K  +   AL  F+ M  R ++  N ++   ++   
Sbjct: 66  DATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACA 125

Query: 107 VANAIEFFDRMPG--------RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
             +A++   ++ G         DS   S+LV   I+  ++ +A RV  +        E  
Sbjct: 126 GLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMF------EPD 179

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           V +++ L+  Y ++G V+EA++LF ++        G+   + N++SWN MI  +  +G  
Sbjct: 180 VVSWSALVAAYARQGCVDEAKRLFSEM--------GDSGVQPNLISWNGMIAGFNHSGLY 231

Query: 219 VSAREIFEQMLER-------------------DTFSWNTMISGYI-------------HV 246
             A  +F  M  R                   +      +I GY+              +
Sbjct: 232 SEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSAL 291

Query: 247 LDM-------EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK----NL 295
           +DM        E S +F +M H D  + NA + G ++ G +E +L  F+++  +    N+
Sbjct: 292 IDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNV 351

Query: 296 VSWNSMIAGCETN-KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           VSW SMIA C  N +D E A++LF +MQ+ G KP+  T   +L     I  L  G   H 
Sbjct: 352 VSWTSMIACCSQNGRDIE-ALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHC 410

Query: 355 M-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
             + + +  DV + +ALI MYA+CG I  +RI F+ +   KN+V WNA+I G A HG A 
Sbjct: 411 FSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPT-KNLVCWNAVIAGYAMHGKAK 469

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           EA+E+F  M+     P  I+F  VLSAC+ +GL EEG  +F SM ++YGIE R+EH+A +
Sbjct: 470 EAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACM 529

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           V ++ R G+LE A  +I+ MP  PD  VWGALL +CRVHNNV L +VAAE L ++EP N 
Sbjct: 530 VTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNP 589

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             Y+LL N+YA  G W++ N VR +MK+  ++K  G SW++
Sbjct: 590 GNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIE 630



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 126/311 (40%), Gaps = 54/311 (17%)

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
            I +  L  DT     ++S Y + +   +A+ +   +P P+  +++ ++  +++      
Sbjct: 38  HILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKF----- 92

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
                                       +  A+  F QM   G  PD     S +   +G
Sbjct: 93  --------------------------HQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAG 126

Query: 343 IVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  L    Q+H + + +    D  + ++L+ MY +C  I +A  +F+ M    +VVSW+A
Sbjct: 127 LSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM-FEPDVVSWSA 185

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           ++   A  G   EA  LF  M    V P  I++  +++   H+GL  E    F  M +  
Sbjct: 186 LVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM-HLR 244

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE---------PDKAVWGALL---GAC 509
           G EP     +S++  VG      D  DL+ G+             DK V  AL+   G C
Sbjct: 245 GFEPDGTTISSVLPAVG------DLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKC 298

Query: 510 RVHNNVELAQV 520
              +  E++QV
Sbjct: 299 SCTS--EMSQV 307


>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
          Length = 888

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 193/620 (31%), Positives = 323/620 (52%), Gaps = 64/620 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  +VK  ++  AR+LFD MP+R VVS+  M+   +  RGS  + +A  L+   P    
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMK-RGS--VRDAVELYRQCPLCSV 210

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPA-------------------------------- 88
             +  +I+G+      ++AL +F+ M +                                
Sbjct: 211 PFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGL 270

Query: 89  --------RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
                   +N+   N++I+ +L+ GD   A   FD M  RD  S +AL+    + G+L+ 
Sbjct: 271 AMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEG 330

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A RVL +   R +       ++ TL+  + Q+G  +EA  L+ ++  +  R         
Sbjct: 331 ARRVLDEMPERNE------VSWGTLVARHEQKGNAKEAVSLYSQMLADGCRP-------- 376

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMISGYIHVLDMEEASNLF 256
           NI  ++S++   A   D+ S R+I  Q L+     + F  + +I  Y     + +A  +F
Sbjct: 377 NISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIF 436

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
             +P  + + WN+++SGY+    +  A + FK+MP +N+ SWNS+I+G   N+ +  A+K
Sbjct: 437 YSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALK 496

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYA 375
            F  M   G+ P   TFSS+L   + +  L +G  +H  + K  I + + +  AL  MYA
Sbjct: 497 SFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYA 556

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           + G +  ++ +F EM   +N V+W AMI G A +GFA E++ LF+ M S  + P   TF+
Sbjct: 557 KSGDLDSSKRVFYEMPK-RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFL 615

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           ++L AC+H+GLVE    +F+ M+   GI P+ +H+  +VD++ R G L +A DL+  +  
Sbjct: 616 AILFACSHSGLVEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIES 674

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           + +   W ALL AC ++ N E+ + AA+ L +++ +N+  YVLL NMYA  G+W DA E+
Sbjct: 675 KSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEM 734

Query: 556 RLLMKSNNIKKPTGYSWVDF 575
           R+LMK  N+KK  G SWV  
Sbjct: 735 RILMKGINLKKDGGCSWVQI 754



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 186/449 (41%), Gaps = 118/449 (26%)

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
           AY+ ++  + + G +  AR+LFD +P            +R++VS+ +M+    K G V  
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMP------------ERSVVSYTTMVDALMKRGSVRD 197

Query: 221 AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTLTW------- 267
           A E++ Q        +  MI+G++     ++A  +F +M      P+  TL         
Sbjct: 198 AVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIG 257

Query: 268 ---------------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
                                      N++++ Y + G+ + A   F  M  +++VSW +
Sbjct: 258 AGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTA 317

Query: 301 MIAGCETNKDYEG-------------------------------AIKLFIQMQVEGEKPD 329
           ++       D EG                               A+ L+ QM  +G +P+
Sbjct: 318 LLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPN 377

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFE 388
              FSS+L   + + DL  G +IH    K     +V +++ALI MY +C  + +A++IF 
Sbjct: 378 ISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFY 437

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-------------------------R 423
            +   KN+V WN++I G +++    EA ELFK M                         +
Sbjct: 438 SLP-QKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALK 496

Query: 424 SFKVL------PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           SF  +      P  ITF SVL ACA    +E G+     ++ + GI+  I    +L D+ 
Sbjct: 497 SFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKII-KLGIKESIFVGTALSDMY 555

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            + G L+ +  +   MP   D A W A++
Sbjct: 556 AKSGDLDSSKRVFYEMPKRNDVA-WTAMI 583



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 153/336 (45%), Gaps = 23/336 (6%)

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPD 263
           +++ M+  + KAGD+VSAR +F+ M ER   S+ TM+   +    + +A  L+ + P   
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCS 209

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRM----PQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
              + AM++G+      + AL  F  M       N ++  S+I  C       GA +  +
Sbjct: 210 VPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKAC------IGAGEFDL 263

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHL----GMQIHQMVTKTVIPDVPINNALITMYA 375
            M + G     +     L + + ++ L+L         +M  +  + DV    AL+ +YA
Sbjct: 264 AMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYA 323

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
             G +  AR + +EM   +N VSW  ++      G A EA+ L+  M +    P    F 
Sbjct: 324 ELGDLEGARRVLDEMP-ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFS 382

Query: 436 SVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           SVL ACA    +  GR+ H +++  +      +   ++L+D+  +  +L DA  +   +P
Sbjct: 383 SVLGACASLQDLRSGRKIHNQTL--KMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP 440

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
            + +   W +L+      NN ++  V AE L K  P
Sbjct: 441 -QKNIVCWNSLISG--YSNNSKM--VEAEELFKKMP 471


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 193/580 (33%), Positives = 307/580 (52%), Gaps = 67/580 (11%)

Query: 47  EARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGD 106
           +A  + D++PE +  +++T+I  ++K  +   AL  F+ M  R ++  N ++   ++   
Sbjct: 66  DATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACA 125

Query: 107 VANAIEFFDRMPG--------RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
             +A++   ++ G         DS   S+LV   I+  ++ +A RV  +        E  
Sbjct: 126 GLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMF------EPD 179

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           V +++ L+  Y ++G V+EA++LF ++        G+   + N++SWN MI  +  +G  
Sbjct: 180 VVSWSALVAAYARQGCVDEAKRLFSEM--------GDSGVQPNLISWNGMIAGFNHSGLY 231

Query: 219 VSAREIFEQMLER-------------------DTFSWNTMISGYI-------------HV 246
             A  +F  M  R                   +      +I GY+              +
Sbjct: 232 SEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSAL 291

Query: 247 LDM-------EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK----NL 295
           +DM        E S +F +M H D  + NA + G ++ G +E +L  F+++  +    N+
Sbjct: 292 IDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNV 351

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           VSW SMIA C  N     A++LF +MQ+ G KP+  T   +L     I  L  G   H  
Sbjct: 352 VSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCF 411

Query: 356 -VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
            + + +  DV + +ALI MYA+CG I  +RI F+ +   KN+V WNA+I G A HG A E
Sbjct: 412 SLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPT-KNLVCWNAVIAGYAMHGKAKE 470

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           A+E+F  M+     P  I+F  VLSAC+ +GL EEG  +F SM ++YGIE R+EH+A +V
Sbjct: 471 AMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMV 530

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
            ++ R G+LE A  +I+ MP  PD  VWGALL +CRVHNNV L +VAAE L ++EP N  
Sbjct: 531 TLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPG 590

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            Y+LL N+YA  G W++ N VR +MK+  ++K  G SW++
Sbjct: 591 NYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIE 630



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 126/311 (40%), Gaps = 54/311 (17%)

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
            I +  L  DT     ++S Y + +   +A+ +   +P P+  +++ ++  +++      
Sbjct: 38  HILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKF----- 92

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
                                       +  A+  F QM   G  PD     S +   +G
Sbjct: 93  --------------------------HQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAG 126

Query: 343 IVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  L    Q+H + + +    D  + ++L+ MY +C  I +A  +F+ M    +VVSW+A
Sbjct: 127 LSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM-FEPDVVSWSA 185

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           ++   A  G   EA  LF  M    V P  I++  +++   H+GL  E    F  M +  
Sbjct: 186 LVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM-HLR 244

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE---------PDKAVWGALL---GAC 509
           G EP     +S++  VG      D  DL+ G+             DK V  AL+   G C
Sbjct: 245 GFEPDGTTISSVLPAVG------DLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKC 298

Query: 510 RVHNNVELAQV 520
              +  E++QV
Sbjct: 299 SCTS--EMSQV 307


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 197/560 (35%), Positives = 299/560 (53%), Gaps = 79/560 (14%)

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG---RDSASLSALVSGLIQNGEL 138
           LFNS    NV  + +M+  +    D A  +  +++M G   R  A +  ++      G +
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGI 115

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR------- 191
              A VL K G    G +  VR  N +I  Y + G +  ARK+FD+IP + +R       
Sbjct: 116 GFHAHVL-KLGH---GSDAFVR--NAVIDMYARLGPIGHARKVFDEIP-DYERKVADWNA 168

Query: 192 ---------GEGNVRF------KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
                     EG  ++      +RN+++W +M+  YAK  D+ +AR  F+ M ER   SW
Sbjct: 169 MVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSW 228

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSG------------------- 273
           N M+SGY      EEA  LF +M +    PD  TW  ++S                    
Sbjct: 229 NAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQ 288

Query: 274 ----------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                           YA+ G+L+ A   F  MP +N+V+WNSMIAG   N     AI+L
Sbjct: 289 KRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIEL 348

Query: 318 FIQM-QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYA 375
           F +M   +   PD  T  S++S    +  L LG  + + +T+  I   +  +NA+I MY+
Sbjct: 349 FKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYS 408

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           RCG++ +A+ +F+EM   ++VVS+N +I G A+HG   EA+ L  +M+   + P  +TFI
Sbjct: 409 RCGSMEDAKRVFQEMAT-RDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFI 467

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
            VL+AC+HAGL+EEGR+ F+S+      +P I+H+A +VD++GR G LEDA   ++ MP 
Sbjct: 468 GVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPM 522

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           EP   V+G+LL A R+H  VEL ++AA  L ++EP+NS  ++LL N+YA  GRW D   +
Sbjct: 523 EPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERI 582

Query: 556 RLLMKSNNIKKPTGYSWVDF 575
           R  MK   +KK TG+SWV++
Sbjct: 583 REAMKKGGVKKTTGWSWVEY 602



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/425 (30%), Positives = 213/425 (50%), Gaps = 37/425 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMP--QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           +I  Y +   +  ARK+FDE+P  +R V  WN M+SGY      G   +A++LFD+MPER
Sbjct: 136 VIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEG---QAQWLFDVMPER 192

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           + +TW  +++GYAK  ++E A R F+ MP R+VVSWNAM+SG+ QNG    A+  FD M 
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMV 252

Query: 119 GR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
                 D  +   ++S     G+   AA ++     +       VR    L+  Y + G 
Sbjct: 253 NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVR--TALLDMYAKFGD 310

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-----L 229
           ++ ARKLF+ +P             RN+V+WNSMI  YA+ G    A E+F++M     L
Sbjct: 311 LDSARKLFNTMP------------GRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKL 358

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW-----NAMVSGYAQIGNLELAL 284
             D  +  ++IS   H L   E  N  V+    + +       NAM+  Y++ G++E A 
Sbjct: 359 TPDEVTMVSVISACGH-LGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAK 417

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
             F+ M  +++VS+N++I+G   +     AI L   M+  G +PDR TF  +L+  S   
Sbjct: 418 RVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAG 477

Query: 345 DLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
            L  G ++ + +     P +     ++ +  R G + +A+   E M +  +   + +++ 
Sbjct: 478 LLEEGRKVFESIKD---PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLN 534

Query: 405 GCASH 409
               H
Sbjct: 535 ASRIH 539


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 181/553 (32%), Positives = 303/553 (54%), Gaps = 20/553 (3%)

Query: 33  ISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNV- 91
           +  +  +  SG +  AR +FD +P+     WNT+I GY++    +  + ++  M A N+ 
Sbjct: 45  VIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIK 104

Query: 92  ---VSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC 148
               ++  ++ GF +N  +       +        S   +    I    L     +  K 
Sbjct: 105 PDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKV 164

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
               D  E  V  +N ++ GY +  + ++++ LF ++     RG        N V+   M
Sbjct: 165 FDMGDAWE--VVTWNIMLSGYNRVKQFKKSKMLFIEME---KRG-----VSPNSVTLVLM 214

Query: 209 IMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDT 264
           +   +K  D+   + I++ +    +ER+    N +I  +    +M+EA ++F  M + D 
Sbjct: 215 LSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDV 274

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
           ++W ++V+G+A IG ++LA  +F ++P+++ VSW +MI G      +  A+ LF +MQ+ 
Sbjct: 275 ISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMS 334

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEA 383
             KPD  T  SIL+  + +  L LG  +   + K  I  D  + NALI MY +CG + +A
Sbjct: 335 NVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKA 394

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
           + +F+EM   K+  +W AMI G A +G   EAL +F +M    + P  IT+I VL AC H
Sbjct: 395 KKVFKEMHH-KDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTH 453

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           AG+VE+G+  F SM  ++GI+P + H+  +VD++GR GRLE+A ++I  MP +P+  VWG
Sbjct: 454 AGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWG 513

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
           +LLGACRVH NV+LA++AA+ ++++EPEN   YVLL N+YA   RW++  +VR LM    
Sbjct: 514 SLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERG 573

Query: 564 IKKPTGYSWVDFS 576
           IKK  G S ++ +
Sbjct: 574 IKKTPGCSLMELN 586



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 181/414 (43%), Gaps = 68/414 (16%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGY---------------ISSRGSG--------------- 43
           ARK+FD     +VV+WN+M+SGY               +  RG                 
Sbjct: 161 ARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSK 220

Query: 44  --FLEEARYLFDIMP----ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM 97
              LE  ++++  +     ER+ +  N +I  +A  GEM+EA  +F++M  R+V+SW ++
Sbjct: 221 LKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSI 280

Query: 98  ISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG-SRCDGGE 156
           ++GF   G +  A ++FD++P RD  S +A++ G ++     EA  +  +   S     E
Sbjct: 281 VTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDE 340

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
             + +  T     G     E  +   DK  +  D   G           N++I  Y K G
Sbjct: 341 FTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVG-----------NALIDMYFKCG 389

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVS 272
           +V  A+++F++M  +D F+W  MI G       EEA  +F  M      PD +T+  ++ 
Sbjct: 390 NVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLC 449

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEK 327
                G +E    FF  M  ++ +  N    GC  +        E A ++ + M V   K
Sbjct: 450 ACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPV---K 506

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA----LITMYARC 377
           P+   + S+L    G   +H  +Q+ +M  K ++   P N A    L  +YA C
Sbjct: 507 PNSIVWGSLL----GACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAAC 556



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 115/271 (42%), Gaps = 52/271 (19%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           EM +A+ +FD M  RDV+SW  +++G+ +    G ++ AR  FD +PERD V+W  +I G
Sbjct: 258 EMDEAQSVFDNMKNRDVISWTSIVTGFAN---IGQIDLARKYFDQIPERDYVSWTAMIDG 314

Query: 70  YAKTGEMEEALRLFNSMPARNVV----------------------SW------------- 94
           Y +     EAL LF  M   NV                        W             
Sbjct: 315 YLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKND 374

Query: 95  ----NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGS 150
               NA+I  + + G+V  A + F  M  +D  + +A++ GL  NG  +EA  +      
Sbjct: 375 TFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIE 434

Query: 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
                +++   Y  ++      G VE+ +  F  I +    G      K N+  +  M+ 
Sbjct: 435 ASITPDEI--TYIGVLCACTHAGMVEKGQSFF--ISMTMQHG-----IKPNVTHYGCMVD 485

Query: 211 CYAKAGDVVSAREIFEQM-LERDTFSWNTMI 240
              +AG +  A E+   M ++ ++  W +++
Sbjct: 486 LLGRAGRLEEAHEVIVNMPVKPNSIVWGSLL 516


>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
          Length = 950

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 193/620 (31%), Positives = 323/620 (52%), Gaps = 64/620 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  +VK  ++  AR+LFD MP+R VVS+  M+   +  RGS  + +A  L+   P    
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMK-RGS--VRDAVELYRQCPLCSV 210

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPA-------------------------------- 88
             +  +I+G+      ++AL +F+ M +                                
Sbjct: 211 PFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGL 270

Query: 89  --------RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
                   +N+   N++I+ +L+ GD   A   FD M  RD  S +AL+    + G+L+ 
Sbjct: 271 AMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEG 330

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A RVL +   R +       ++ TL+  + Q+G  +EA  L+ ++  +  R         
Sbjct: 331 ARRVLDEMPERNE------VSWGTLVARHEQKGNAKEAVSLYSQMLADGCRP-------- 376

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMISGYIHVLDMEEASNLF 256
           NI  ++S++   A   D+ S R+I  Q L+     + F  + +I  Y     + +A  +F
Sbjct: 377 NISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIF 436

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
             +P  + + WN+++SGY+    +  A + FK+MP +N+ SWNS+I+G   N+ +  A+K
Sbjct: 437 YSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALK 496

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYA 375
            F  M   G+ P   TFSS+L   + +  L +G  +H  + K  I + + +  AL  MYA
Sbjct: 497 SFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYA 556

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           + G +  ++ +F EM   +N V+W AMI G A +GFA E++ LF+ M S  + P   TF+
Sbjct: 557 KSGDLDSSKRVFYEMPK-RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFL 615

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           ++L AC+H+GLVE    +F+ M+   GI P+ +H+  +VD++ R G L +A DL+  +  
Sbjct: 616 AILFACSHSGLVEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIES 674

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           + +   W ALL AC ++ N E+ + AA+ L +++ +N+  YVLL NMYA  G+W DA E+
Sbjct: 675 KSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEM 734

Query: 556 RLLMKSNNIKKPTGYSWVDF 575
           R+LMK  N+KK  G SWV  
Sbjct: 735 RILMKGINLKKDGGCSWVQI 754



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 186/449 (41%), Gaps = 118/449 (26%)

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
           AY+ ++  + + G +  AR+LFD +P            +R++VS+ +M+    K G V  
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMP------------ERSVVSYTTMVDALMKRGSVRD 197

Query: 221 AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTLTW------- 267
           A E++ Q        +  MI+G++     ++A  +F +M      P+  TL         
Sbjct: 198 AVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIG 257

Query: 268 ---------------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
                                      N++++ Y + G+ + A   F  M  +++VSW +
Sbjct: 258 AGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTA 317

Query: 301 MIAGCETNKDYEG-------------------------------AIKLFIQMQVEGEKPD 329
           ++       D EG                               A+ L+ QM  +G +P+
Sbjct: 318 LLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPN 377

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFE 388
              FSS+L   + + DL  G +IH    K     +V +++ALI MY +C  + +A++IF 
Sbjct: 378 ISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFY 437

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-------------------------R 423
            +   KN+V WN++I G +++    EA ELFK M                         +
Sbjct: 438 SLP-QKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALK 496

Query: 424 SFKVL------PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           SF  +      P  ITF SVL ACA    +E G+     ++ + GI+  I    +L D+ 
Sbjct: 497 SFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKII-KLGIKESIFVGTALSDMY 555

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            + G L+ +  +   MP   D A W A++
Sbjct: 556 AKSGDLDSSKRVFYEMPKRNDVA-WTAMI 583



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 162/358 (45%), Gaps = 22/358 (6%)

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPD 263
           +++ M+  + KAGD+VSAR +F+ M ER   S+ TM+   +    + +A  L+ + P   
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCS 209

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRM----PQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
              + AM++G+      + AL  F  M       N ++  S+I  C       GA +  +
Sbjct: 210 VPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKAC------IGAGEFDL 263

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHL----GMQIHQMVTKTVIPDVPINNALITMYA 375
            M + G     +     L + + ++ L+L         +M  +  + DV    AL+ +YA
Sbjct: 264 AMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYA 323

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
             G +  AR + +EM   +N VSW  ++      G A EA+ L+  M +    P    F 
Sbjct: 324 ELGDLEGARRVLDEMP-ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFS 382

Query: 436 SVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           SVL ACA    +  GR+ H +++  +      +   ++L+D+  +  +L DA  +   +P
Sbjct: 383 SVLGACASLQDLRSGRKIHNQTL--KMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP 440

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
            + +   W +L+      NN ++ + A E   K+   N   +  + + YA   ++ DA
Sbjct: 441 -QKNIVCWNSLISG--YSNNSKMVE-AEELFKKMPARNVASWNSIISGYAQNRQFIDA 494


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 192/551 (34%), Positives = 296/551 (53%), Gaps = 63/551 (11%)

Query: 67  ISGYAKTGEMEEALRLFNSM-PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
            S  +    +E A+ LFN   P  N+  +N MI GF  + + A  I  +  M    +   
Sbjct: 72  FSAVSHPENLELAILLFNHFTPYPNLYIFNTMILGFPFSNEKAFTI--YRSMLQNGTYPD 129

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDG---GEDLVRAYNTLIVGYGQRGRVEEARKLF 182
                 L+Q  +     +  + C +   G    E+ +R  N+LI  Y   G  E AR+LF
Sbjct: 130 RQTFLYLLQTTKFVAEVKQ-IHCHALVFGLLSKEEYLR--NSLIKRYVDNGCFECARQLF 186

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFS--- 235
           D++              RN+VS+N+MI+ +AK G+++   E+F  M    LE D F+   
Sbjct: 187 DEMS------------DRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLG 234

Query: 236 --------------------------------WNTMISGYIHVLDMEEASNLFVKMPHPD 263
                                           +N ++  Y+   +++ A  +F      D
Sbjct: 235 LLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKD 294

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
           T++WN +++GYA++G LELA D F ++P +++VSWNS+I+G   N DY     LF +M  
Sbjct: 295 TVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFA 354

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVE 382
           E  KPD+ T  +++S  + +  L  G  IH +  K +   +    +ALI MY +CG+I  
Sbjct: 355 ENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIER 414

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           A +IF ++   K+V +W  MI G A HGF  +ALELF  M++ +  P  +TF+SVL+AC+
Sbjct: 415 AFVIFNQIPE-KDVTTWTTMITGFAFHGFGNKALELFSVMQA-ETKPNDVTFVSVLAACS 472

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
           H+GLV+EG + F SM   Y IEP +EH+  LVD++ R GRL DA+ +I+ MP EP +++W
Sbjct: 473 HSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIW 532

Query: 503 GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
           GA+L ACR+H N+ELA+ A   L+K+EPE    Y+LL N+YA  GRW  ++ +R +M S 
Sbjct: 533 GAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSR 592

Query: 563 NIKKPTGYSWV 573
            +KK  G S V
Sbjct: 593 GVKKIAGCSSV 603



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 197/401 (49%), Gaps = 46/401 (11%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +I  Y+ +   G  E AR LFD M +R+ V++NT+I G+AK G +   L LF+ M + 
Sbjct: 167 NSLIKRYVDN---GCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSH 223

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL--------SALVSGLIQNGELDEA 141
            +   +  + G L         +    +  +   S+        +AL+   ++  EL  A
Sbjct: 224 GLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLA 283

Query: 142 ARVLVKCGSRCDGG-EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
            +V        DG  E    ++NT+I GY + G +E A  LF++IP             R
Sbjct: 284 RKVF-------DGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPT------------R 324

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA---S 253
           +IVSWNS+I  YA+ GD V+ + +F +M    ++ D  +   +IS    +  +++     
Sbjct: 325 DIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIH 384

Query: 254 NLFVKM-PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
            L VKM    +  + +A++  Y + G++E A   F ++P+K++ +W +MI G   +    
Sbjct: 385 GLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGN 444

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTK--TVIPDVPINN 368
            A++LF  MQ E  KP+  TF S+L+    SG+VD   G++I   + K  ++ P V    
Sbjct: 445 KALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVD--EGLKIFSSMKKRYSIEPGVEHYG 501

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            L+ +  R G +++A  + E+M +  +   W A++  C  H
Sbjct: 502 CLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMH 542



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 186/442 (42%), Gaps = 97/442 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS--GFLEEARYLFDIM--- 55
           +I  YV       AR+LFDEM  R+VVS+N MI G+ +  G+  G LE    LF  M   
Sbjct: 169 LIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGF-AKVGNILGILE----LFHDMRSH 223

Query: 56  ---PE---------------------------------RDCVTWNTVISGYAKTGEMEEA 79
              P+                                  + + +N ++  Y K  E++ A
Sbjct: 224 GLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLA 283

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELD 139
            ++F+    ++ VSWN +I+G+ + G++  A + F+++P RD  S ++L+SG  QNG+  
Sbjct: 284 RKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDY- 342

Query: 140 EAARVLVKCGSRCDGGE----DLVRAYNTLIVGYGQRGRVEEAR-------KLFDKIPVN 188
               V VKC       E    D V   N LI    + G +++ R       K+  KI   
Sbjct: 343 ----VTVKCLFTRMFAENVKPDKVTIVN-LISAVAEMGALDQGRWIHGLAVKMLTKIEA- 396

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                          S +++I  Y K G +  A  IF Q+ E+D  +W TMI+G+     
Sbjct: 397 --------------FSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGF 442

Query: 249 MEEASNLFVKM---PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
             +A  LF  M     P+ +T+ ++++  +  G ++  L  F  M ++  +       GC
Sbjct: 443 GNKALELFSVMQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGC 502

Query: 306 ETNKDYEG-----AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
             +          AI +  +M +E   P R  + ++LS       +H  M++ +     +
Sbjct: 503 LVDLLCRSGRLLDAIGVIEKMPME---PSRSIWGAVLSACR----MHRNMELAERALMEL 555

Query: 361 IPDVPINNA----LITMYARCG 378
           +   P        L  +YA CG
Sbjct: 556 LKLEPEKEGGYILLSNVYATCG 577


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 214/635 (33%), Positives = 327/635 (51%), Gaps = 84/635 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS----RGSGFLEEA-------- 48
           +I+ YV+  +   ARKLFDEMP R+ V+W  +ISGY  +       G L+E         
Sbjct: 41  LINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLPN 100

Query: 49  RYLFD--IMPERDCVTW------------------------NTVISGYAKTGEMEEALRL 82
           R+ F   I   ++ + W                        N +I+ YAK G+++ A  +
Sbjct: 101 RFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSV 160

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS---ALVSGLIQNGELD 139
           F  M  ++ VSWN+MI+G  QN    +A++ ++ M  R +  +    AL+S L     L 
Sbjct: 161 FGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSM--RKTGLMPSNFALISALSSCASL- 217

Query: 140 EAARVLVKCGSRCDG---GEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
               +L+   +  +G   G D+ V   NTL+  Y +  R+ E +K+F  +          
Sbjct: 218 --GCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWM---------- 265

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
              +R+ VSWN++I   A +G  VS  E  E  LE     W+     +I++L     S+L
Sbjct: 266 --LERDQVSWNTVIGALADSGASVS--EAIEVFLEMMRAGWSPNRVTFINLL--ATVSSL 319

Query: 256 FV-KMPHP------------DTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSM 301
              K+ H             D    NA+++ Y + G +E   + F RM ++ + VSWNSM
Sbjct: 320 STSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSM 379

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
           I+G   N+    A+ L   M   G++ D  TF+++LS  + +  L  GM++H    +  +
Sbjct: 380 ISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACL 439

Query: 362 -PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
             DV I +AL+ MY++CG I  A   F  M + +N+ SWN+MI G A HG    AL LF 
Sbjct: 440 ESDVVIGSALVDMYSKCGRIDYASRFFNLMPV-RNLYSWNSMISGYARHGHGDNALRLFT 498

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M+    LP +ITF+ VLSAC+H GLV+EG ++FKSM   YG+ PR+EH++ +VD++GR 
Sbjct: 499 RMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRA 558

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN--NVELAQVAAEALMKVEPENSTPYVL 538
           G L+   + I  MP +P+  +W  +LGAC   N    EL + AAE L  ++P+N+  YVL
Sbjct: 559 GELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVL 618

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           L NMYA  G+W+D    R  M+   +KK  G SWV
Sbjct: 619 LSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWV 653



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 196/479 (40%), Gaps = 81/479 (16%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           + D    NT+I+ Y + G+   A +LF+ MP RN V+W  +ISG+ QNG   +A      
Sbjct: 32  DSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKE 91

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           M          +  G + N       R       R      L R     + GY  R  + 
Sbjct: 92  M----------IFEGFLPN-------RFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLN 134

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           +A+                      +   N +I  YAK GD+  AR +F  M+++D+ SW
Sbjct: 135 DAK----------------------VAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSW 172

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHP---------------------------------- 262
           N+MI+G       E+A   +  M                                     
Sbjct: 173 NSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIK 232

Query: 263 -----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI-AGCETNKDYEGAIK 316
                D    N +++ YA+   L      F  M +++ VSWN++I A  ++      AI+
Sbjct: 233 LGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIE 292

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYA 375
           +F++M   G  P+R TF ++L+  S +    L  QIH ++ K  V  D  I NAL+  Y 
Sbjct: 293 VFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYG 352

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           + G +     IF  M   ++ VSWN+MI G   +    +A++L   M          TF 
Sbjct: 353 KSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFA 412

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           +VLSACA    +E G +     +    +E  +   ++LVD+  + GR++ A      MP
Sbjct: 413 TVLSACATVATLECGMEVHACAIRAC-LESDVVIGSALVDMYSKCGRIDYASRFFNLMP 470



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 170/361 (47%), Gaps = 46/361 (12%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  ++   N++I  Y + GD VSAR++F++M +R+  +W  +ISGY      E+A  +  
Sbjct: 31  FDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLK 90

Query: 258 KM------PH-----------PDTLTW------------------------NAMVSGYAQ 276
           +M      P+            +++ W                        N +++ YA+
Sbjct: 91  EMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAK 150

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            G+++ A   F  M  K+ VSWNSMI G + NK +E A+K +  M+  G  P      S 
Sbjct: 151 CGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISA 210

Query: 337 LSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           LS  + +  + LG Q H    K  +  DV ++N L+ +YA    + E + +F  M L ++
Sbjct: 211 LSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWM-LERD 269

Query: 396 VVSWNAMIGGCASHGFA-TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
            VSWN +IG  A  G + +EA+E+F  M      P  +TFI++L+  +     +   Q  
Sbjct: 270 QVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQ-I 328

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
            +++ +Y ++       +L+   G+ G +E+  ++   M    D+  W +++    +HN 
Sbjct: 329 HALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISG-YIHNE 387

Query: 515 V 515
           +
Sbjct: 388 L 388



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 37/288 (12%)

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           + +   + D F  NT+I+ Y+ + D   A  LF +MP  + +TW  ++SGY Q G     
Sbjct: 26  VLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNG----- 80

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF-SSILSMSSG 342
                 MP                    E A  +  +M  EG  P+R  F S+I +    
Sbjct: 81  ------MP--------------------EDACGVLKEMIFEGFLPNRFAFGSAIRACQES 114

Query: 343 IVDLHLGMQIHQMVTKTVIPD--VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
           ++    G Q+H    +T + D  V + N LI MYA+CG I  AR +F  M + K+ VSWN
Sbjct: 115 MLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLM-VDKDSVSWN 173

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           +MI G   +    +A++ + SMR   ++P+    IS LS+CA  G +  G+Q     + +
Sbjct: 174 SMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGI-K 232

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
            G++  +    +L+ +     RL +   +   M  E D+  W  ++GA
Sbjct: 233 LGLDMDVSVSNTLLALYAETSRLAECQKVFSWM-LERDQVSWNTVIGA 279


>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
          Length = 950

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 193/620 (31%), Positives = 323/620 (52%), Gaps = 64/620 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  +VK  ++  AR+LFD MP+R VVS+  M+   +  RGS  + +A  L+   P    
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMK-RGS--VRDAVELYRQCPLCSV 210

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPA-------------------------------- 88
             +  +I+G+      ++AL +F+ M +                                
Sbjct: 211 PFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGL 270

Query: 89  --------RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
                   +N+   N++I+ +L+ GD   A   FD M  RD  S +AL+    + G+L+ 
Sbjct: 271 AMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEG 330

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A RVL +   R +       ++ TL+  + Q+G  +EA  L+ ++  +  R         
Sbjct: 331 ARRVLDEMPERNE------VSWGTLVARHEQKGNAKEAVSLYSQMLADGCRP-------- 376

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMISGYIHVLDMEEASNLF 256
           NI  ++S++   A   D+ S R+I  Q L+     + F  + +I  Y     + +A  +F
Sbjct: 377 NISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIF 436

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
             +P  + + WN+++SGY+    +  A + FK+MP +N+ SWNS+I+G   N+ +  A+K
Sbjct: 437 YSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALK 496

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYA 375
            F  M   G+ P   TFSS+L   + +  L +G  +H  + K  I + + +  AL  MYA
Sbjct: 497 SFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYA 556

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           + G +  ++ +F EM   +N V+W AMI G A +GFA E++ LF+ M S  + P   TF+
Sbjct: 557 KSGDLDSSKRVFYEMPK-RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFL 615

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           ++L AC+H+GLVE    +F+ M+   GI P+ +H+  +VD++ R G L +A DL+  +  
Sbjct: 616 AILFACSHSGLVEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIES 674

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           + +   W ALL AC ++ N E+ + AA+ L +++ +N+  YVLL NMYA  G+W DA E+
Sbjct: 675 KSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEM 734

Query: 556 RLLMKSNNIKKPTGYSWVDF 575
           R+LMK  N+KK  G SWV  
Sbjct: 735 RILMKGINLKKDGGCSWVQI 754



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 186/449 (41%), Gaps = 118/449 (26%)

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
           AY+ ++  + + G +  AR+LFD +P            +R++VS+ +M+    K G V  
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMP------------ERSVVSYTTMVDALMKRGSVRD 197

Query: 221 AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTLTW------- 267
           A E++ Q        +  MI+G++     ++A  +F +M      P+  TL         
Sbjct: 198 AVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIG 257

Query: 268 ---------------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
                                      N++++ Y + G+ + A   F  M  +++VSW +
Sbjct: 258 AGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTA 317

Query: 301 MIAGCETNKDYEG-------------------------------AIKLFIQMQVEGEKPD 329
           ++       D EG                               A+ L+ QM  +G +P+
Sbjct: 318 LLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPN 377

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFE 388
              FSS+L   + + DL  G +IH    K     +V +++ALI MY +C  + +A++IF 
Sbjct: 378 ISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFY 437

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-------------------------R 423
            +   KN+V WN++I G +++    EA ELFK M                         +
Sbjct: 438 SLP-QKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALK 496

Query: 424 SFKVL------PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           SF  +      P  ITF SVL ACA    +E G+     ++ + GI+  I    +L D+ 
Sbjct: 497 SFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKII-KLGIKESIFVGTALSDMY 555

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            + G L+ +  +   MP   D A W A++
Sbjct: 556 AKSGDLDSSKRVFYEMPKRNDVA-WTAMI 583



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 162/358 (45%), Gaps = 22/358 (6%)

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPD 263
           +++ M+  + KAGD+VSAR +F+ M ER   S+ TM+   +    + +A  L+ + P   
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCS 209

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRM----PQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
              + AM++G+      + AL  F  M       N ++  S+I  C       GA +  +
Sbjct: 210 VPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKAC------IGAGEFDL 263

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHL----GMQIHQMVTKTVIPDVPINNALITMYA 375
            M + G     +     L + + ++ L+L         +M  +  + DV    AL+ +YA
Sbjct: 264 AMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYA 323

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
             G +  AR + +EM   +N VSW  ++      G A EA+ L+  M +    P    F 
Sbjct: 324 ELGDLEGARRVLDEMP-ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFS 382

Query: 436 SVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           SVL ACA    +  GR+ H +++  +      +   ++L+D+  +  +L DA  +   +P
Sbjct: 383 SVLGACASLQDLRSGRKIHNQTL--KMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP 440

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
            + +   W +L+      NN ++ + A E   K+   N   +  + + YA   ++ DA
Sbjct: 441 -QKNIVCWNSLISG--YSNNSKMVE-AEELFKKMPARNVASWNSIISGYAQNRQFIDA 494


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 202/616 (32%), Positives = 319/616 (51%), Gaps = 99/616 (16%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISG- 100
           +G +EEAR +FD + E+  VTW T+I+GY K G    +L LF  M   NVV    ++S  
Sbjct: 177 NGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSV 236

Query: 101 --------FLQNGDVANA-----------------IEF-------------FDRMPGRDS 122
                   FL+ G   +A                 I+F             FD+M  ++ 
Sbjct: 237 LSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNI 296

Query: 123 ASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            S + ++SG +QN    EA ++   + + G + DG      A  +++   G R  +E+ R
Sbjct: 297 ISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDG-----FACTSVLTSCGSREALEQGR 351

Query: 180 KLFD-KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT 238
           ++    I  N +  E    F +N      +I  YAK+  ++ A+++F+ M E++  S+N 
Sbjct: 352 QVHAYTIKANLESDE----FVKN-----GLIDMYAKSNLLIDAKKVFDVMAEQNVISYNA 402

Query: 239 MISGYIHVLDMEEASNLF----VKMPHPDTLTWNAMVSGYAQIGNLELA----------- 283
           MI GY     + EA  LF    V++  P  LT+ +++   A +  LEL+           
Sbjct: 403 MIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFG 462

Query: 284 --LDFF----------------------KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
             LD F                      + M +K++V WN+M  G   + + E A+KL+ 
Sbjct: 463 VSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYS 522

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCG 378
            +Q   +KP+  TF+++++ +S +  L  G Q H  + K  +   P + NAL+ MYA+CG
Sbjct: 523 TLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCG 582

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
           +I EAR +F    + ++VV WN+MI   A HG A EAL +F+ M    + P Y+TF++VL
Sbjct: 583 SIEEARKMFNS-SIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVL 641

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           SAC+HAG VE+G  HF SM   +GI+P  EH+A +V ++GR G+L +A + I+ MP EP 
Sbjct: 642 SACSHAGRVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPA 700

Query: 499 KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558
             VW +LL ACR+  NVEL + AAE  +  +P++S  Y+LL N++A  G W D  +VR  
Sbjct: 701 AIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDR 760

Query: 559 MKSNNIKKPTGYSWVD 574
           M S+ + K  G SW++
Sbjct: 761 MDSSEVVKEPGRSWIE 776



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 157/606 (25%), Positives = 281/606 (46%), Gaps = 88/606 (14%)

Query: 7   KRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---------- 56
           K   +  AR +FD+MP +++++W+ M+S Y      G+ EEA  +F  +           
Sbjct: 74  KSDRVDNARVVFDKMPHKNLITWSSMVSMY---SQQGYSEEALMVFVDLQRKSGEHPNEF 130

Query: 57  ------------------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSM 86
                                         ++D     ++I  Y+K G +EEA  +F+ +
Sbjct: 131 VLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQL 190

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRD--SASLSALVSGLIQNGEL 138
             +  V+W  +I+G+ + G  A ++E F +M      P R   S+ LSA        G  
Sbjct: 191 SEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 250

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
              A VL +      G E  V   N LI  Y +  RV+  RKLFD++ V           
Sbjct: 251 QIHAYVLRR------GTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV----------- 293

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMIS--GYIHVLDMEEA 252
            +NI+SW +MI  Y +      A ++F +M     + D F+  ++++  G    L+    
Sbjct: 294 -KNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQ 352

Query: 253 SNLFVKMPH--PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
            + +    +   D    N ++  YA+   L  A   F  M ++N++S+N+MI G  + + 
Sbjct: 353 VHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEK 412

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNA 369
              A++LF +M+V    P   TF S+L +S+ +  L L  QIH ++ K  V  D+   +A
Sbjct: 413 LSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSA 472

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           LI +Y++C  + +AR +FEEM   K++V WNAM  G   H    EAL+L+ +++  +  P
Sbjct: 473 LIDVYSKCSYVKDARHVFEEMN-EKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKP 531

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE--PRIEHFASLVDIVGRHGRLEDAM 487
              TF ++++A ++   +  G+Q F + + + G++  P + +  +LVD+  + G +E+A 
Sbjct: 532 NEFTFAALITAASNLASLRHGQQ-FHNQLVKMGLDFCPFVTN--ALVDMYAKCGSIEEAR 588

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENSTPYVLLYNMYAD 545
            +     +  D   W +++     H   E A      +MK  ++P N   +V + +  + 
Sbjct: 589 KMFNSSIWR-DVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQP-NYVTFVAVLSACSH 646

Query: 546 VGRWDD 551
            GR +D
Sbjct: 647 AGRVED 652



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 136/503 (27%), Positives = 242/503 (48%), Gaps = 63/503 (12%)

Query: 23  QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRL 82
           Q D    N++I+  + S+ S  ++ AR +FD MP ++ +TW++++S Y++ G  EEAL +
Sbjct: 59  QSDTFLANILIN--VCSK-SDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMV 115

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAA 142
           F  +  +              +G+  N  EF           L++++    Q G +++ A
Sbjct: 116 FVDLQRK--------------SGEHPN--EFV----------LASVIRACTQLGVVEKGA 149

Query: 143 RV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           ++   +V+ G   D     V    +LI  Y + G +EEAR +FD++             +
Sbjct: 150 QLHGFVVRSGFDQD-----VYVGTSLIDFYSKNGNIEEARLVFDQLS------------E 192

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEE-------- 251
           +  V+W ++I  Y K G    + E+F QM E +      ++S  +    M E        
Sbjct: 193 KTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQI 252

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK-D 310
            + +  +    D    N ++  Y +   ++     F +M  KN++SW +MI+G   N  D
Sbjct: 253 HAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFD 312

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNA 369
           +E A+KLF +M   G KPD    +S+L+       L  G Q+H    K  +  D  + N 
Sbjct: 313 WE-AMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNG 371

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           LI MYA+   +++A+ +F+ M   +NV+S+NAMI G +S    +EALELF  MR     P
Sbjct: 372 LIDMYAKSNLLIDAKKVFDVMA-EQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPP 430

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
           + +TF+S+L   A    +E  +Q    ++ ++G+   +   ++L+D+  +   ++DA  +
Sbjct: 431 SLLTFVSLLGVSASLFALELSKQ-IHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHV 489

Query: 490 IKGMPFEPDKAVWGALLGACRVH 512
            + M  E D  VW A+      H
Sbjct: 490 FEEMN-EKDIVVWNAMFFGYTQH 511



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 11/237 (4%)

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS-SGIVDLHLGMQIHQMVTKT 359
           M  G +  KD E        +Q+   +P R  F+++L +S S    +H  +   Q++   
Sbjct: 1   MATGMQKTKDMEDENPC---LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSG 57

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
           +  D  + N LI + ++   +  AR++F++M   KN+++W++M+   +  G++ EAL +F
Sbjct: 58  LQSDTFLANILINVCSKSDRVDNARVVFDKMP-HKNLITWSSMVSMYSQQGYSEEALMVF 116

Query: 420 KSM-RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
             + R     P      SV+ AC   G+VE+G Q     V   G +  +    SL+D   
Sbjct: 117 VDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQ-LHGFVVRSGFDQDVYVGTSLIDFYS 175

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++G +E+A  L+     E     W  ++     +     + V+ E   ++   N  P
Sbjct: 176 KNGNIEEA-RLVFDQLSEKTAVTWTTIIAG---YTKCGRSAVSLELFAQMRETNVVP 228


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 184/584 (31%), Positives = 319/584 (54%), Gaps = 25/584 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEA-----RYLFDIM 55
           M+  Y++     KA  L+  M + +V   N      + +     LE        ++  + 
Sbjct: 112 MMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVG 171

Query: 56  PERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
            + D    NT+I+ YA  G M +A +LF+  P  + VSWN++++G+++ GDV  A   FD
Sbjct: 172 FDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFD 231

Query: 116 RMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
           +MP R+  + ++++  L + G++ EA ++  +   +     D+V +++ LI GY Q G  
Sbjct: 232 QMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEK-----DMV-SWSALISGYEQNGMY 285

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
           EEA  +F ++  N       +R    +V   S++   A    V + + I   ++     S
Sbjct: 286 EEALVMFIEMNAN------GMRLDEVVVV--SVLSACAHLSIVKTGKMIHGLVIRMGIES 337

Query: 236 WNTMISGYIHVL----DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           +  + +  IH+     ++ +A  LF    + D ++WN+M+SG  + G++E A   F  MP
Sbjct: 338 YVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMP 397

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           +K++VSW+++I+G   +  +   + LF +MQ+   +PD     S++S  + +  L  G  
Sbjct: 398 EKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKW 457

Query: 352 IHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +H  + K  +  +V +   L+ MY +CG +  A  +F  M+  K V SWNA+I G A +G
Sbjct: 458 VHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEE-KGVSSWNALIIGLAVNG 516

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
               +L++F  M++  V+P  ITF+ VL AC H GLV+EGR HF SM+ ++GIEP ++H+
Sbjct: 517 LVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHY 576

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
             +VD++GR G L +A  LI+ MP  PD A WGALLGAC+ H + E+ +     L++++P
Sbjct: 577 GCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQP 636

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           ++   +VLL N++A  G W+D  EVR +MK   + K  G S ++
Sbjct: 637 DHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIE 680



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 171/427 (40%), Gaps = 136/427 (31%)

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW----------- 267
           +IF+++   + F WNTM+  YI     E+A  L+  M      PD  T+           
Sbjct: 96  QIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRL 155

Query: 268 ------------------------NAMVSGYAQIGNL----------------------- 280
                                   N +++ YA  GN+                       
Sbjct: 156 LEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILA 215

Query: 281 --------ELALDFFKRMPQKNLV-------------------------------SWNSM 301
                   E A   F +MPQ+N+V                               SW+++
Sbjct: 216 GYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSAL 275

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
           I+G E N  YE A+ +FI+M   G + D     S+LS  + +  +  G  IH +V +  I
Sbjct: 276 ISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGI 335

Query: 362 PD-VPINNALITMYA-------------------------------RCGAIVEARIIFEE 389
              V + NALI MY+                               +CG++ +AR +F+ 
Sbjct: 336 ESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDV 395

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           M   K++VSW+A+I G A H   +E L LF  M+  ++ P     +SV+SAC H   +++
Sbjct: 396 MP-EKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQ 454

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           G+    + + + G++  +    +L+D+  + G +E+A+++  GM  E   + W AL+   
Sbjct: 455 GKW-VHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGME-EKGVSSWNALIIGL 512

Query: 510 RVHNNVE 516
            V+  VE
Sbjct: 513 AVNGLVE 519



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 135/295 (45%), Gaps = 23/295 (7%)

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           L+ +L  F R+   N   WN+M+     +   E A+ L+  M      PD +T+  ++  
Sbjct: 91  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150

Query: 340 SSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            +  +    G +IH  V K     DV + N LI MYA CG + +AR +F+E  +L + VS
Sbjct: 151 CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDS-VS 209

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN+++ G    G   EA  +F  M    ++ +     S++      G V E  + F  M 
Sbjct: 210 WNSILAGYVKKGDVEEAKLIFDQMPQRNIVASN----SMIVLLGKMGQVMEAWKLFNEM- 264

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP---FEPDKAVWGALLGACRVHNNV 515
                E  +  +++L+    ++G  E+A+ +   M       D+ V  ++L AC   + V
Sbjct: 265 ----DEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIV 320

Query: 516 ELAQVAAEALMKVEPENSTPYVLLYN----MYADVGRWDDANEVRLLMKSNNIKK 566
           +  ++    ++++  E+   YV L N    MY+  G   DA   +L   S+N+ +
Sbjct: 321 KTGKMIHGLVIRMGIES---YVNLQNALIHMYSGSGEIMDAQ--KLFNGSHNLDQ 370


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 208/628 (33%), Positives = 321/628 (51%), Gaps = 73/628 (11%)

Query: 1   MISGYVKRREMAKARKLFDE--MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE- 57
           +I+ Y K  ++  AR LFD   M + D VSWN +IS ++   G G   EA  LF  M E 
Sbjct: 189 LIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHV---GEGESLEALSLFRRMQEV 245

Query: 58  --------------------------------------RDCVTWNTVISGYAKTGEMEEA 79
                                                  D    N +I+ YA  G+ME+A
Sbjct: 246 GVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDA 305

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELD 139
            R+F SM  ++ VSWN ++SG +QN   ++AI  F  M  +DS      VS L       
Sbjct: 306 ERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDM--QDSGQKPDQVSVLNMIAASG 363

Query: 140 EAARVL----VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
            +A +L    V   +   G +  +   N+LI  YG+   V+     F+ +P         
Sbjct: 364 RSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMP--------- 414

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
              +++++SW ++I  YA+    + A  +  + ++ +    + M+ G I +      S  
Sbjct: 415 ---EKDLISWTTIIAGYAQNECHLDALNLLRK-VQLEKMDVDPMMIGSILLACSGLKSEK 470

Query: 256 FVKMPH--------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
            +K  H         D L  NA+V+ Y ++  ++ A   F+ +  K++VSW SMI  C  
Sbjct: 471 LIKEIHGYVLKGGLADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVH 530

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPI 366
           N     A++LF  +     +PD  T  S+L  ++ +  L  G +IH  ++ K    +  I
Sbjct: 531 NGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLI 590

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            N+L+ MYARCG +  AR IF  +K  ++++ W +MI     HG   +A++LF  M    
Sbjct: 591 ANSLVDMYARCGTMENARNIFNYVKQ-RDLILWTSMINANGMHGCGKDAIDLFSKMTDEN 649

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           VLP +ITF+++L AC+H+GLV EG+QHF+ M NEY +EP  EH+A LVD++ R   LE+A
Sbjct: 650 VLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEA 709

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
              ++ MP EP   VW ALLGACR+H+N +L +VAA+ L+++  ENS  YVL+ N +A  
Sbjct: 710 YHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAAD 769

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           GRW+D  EVR +MK N +KK  G SW++
Sbjct: 770 GRWNDVEEVRSIMKGNKLKKKPGCSWIE 797



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 147/530 (27%), Positives = 240/530 (45%), Gaps = 73/530 (13%)

Query: 44  FLEEARYLFDIMPERDCVTWNT-VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           FL+   YL       D V  +T  +  Y K G   +A+++F+ M  R + +WNAMI   +
Sbjct: 72  FLKTQNYL-------DSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACV 124

Query: 103 QNGDVANAIEFFDRMP----GRDSASLSALVS--GLIQNGELD-EAARVLVKCGSRCDGG 155
             G    AIE +  M       D+ +   ++   G  +   L  E   V VKCG    GG
Sbjct: 125 SAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGY---GG 181

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
              V   N LI  Y + G +  AR LFD            +  K + VSWNS+I  +   
Sbjct: 182 --FVFVCNALIAMYAKCGDLGGARVLFD----------SGLMEKDDPVSWNSIISAHVGE 229

Query: 216 GDVVSAREIFEQM----LERDTFSWNTMISGY-----------IHVLDMEEASNLFVKMP 260
           G+ + A  +F +M    +E +T+++ + +              IH + ++  SN F    
Sbjct: 230 GESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILK--SNHFT--- 284

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             D    NA+++ YA  G +E A   FK M  K+ VSWN++++G   N  Y  AI  F  
Sbjct: 285 --DVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQD 342

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGA 379
           MQ  G+KPD+ +  ++++ S    +L  GM++H    K  I  ++ I N+LI MY +C  
Sbjct: 343 MQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCC 402

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           +      FE M   K+++SW  +I G A +    +AL L + ++  K+    +   S+L 
Sbjct: 403 VKYMGSAFEYMP-EKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILL 461

Query: 440 ACAHAGLVEEGR-QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           AC  +GL  E   +     V + G+   +   A +V++ G    ++ A  + + +    D
Sbjct: 462 AC--SGLKSEKLIKEIHGYVLKGGLADILIQNA-IVNVYGELALVDYARHVFESIN-SKD 517

Query: 499 KAVWGALLGACRVHNNVELAQVAAEAL--------MKVEPENSTPYVLLY 540
              W +++  C VHN      +A EAL          +EP+  T   +LY
Sbjct: 518 IVSWTSMITCC-VHNG-----LAIEALELFNSLIETNIEPDLITLVSVLY 561



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARI 385
           P +  +S  L + +    L  G Q+H    KT   +  V ++   + MY +CG+  +A  
Sbjct: 44  PLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVK 103

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           +F++M   + + +WNAMIG C S G   EA+EL+K MR   V     TF  VL AC 
Sbjct: 104 VFDKMS-ERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACG 159


>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 831

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 208/700 (29%), Positives = 333/700 (47%), Gaps = 137/700 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++S + K   +  A +LF +MP+R+ VS N +I+  + +   G+  +A   +D+M   + 
Sbjct: 77  ILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKN---GYERQALDTYDLMMVYES 133

Query: 61  V-----TWNTVISG-----------------------------------YAKTGEMEEAL 80
           V     T+ TV S                                    Y K G  E+A 
Sbjct: 134 VKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAF 193

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALV------- 129
           R+F  +   N V++  M+ G  Q   V   +E F  M  +    DS SLS ++       
Sbjct: 194 RVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTILVICAKGV 253

Query: 130 --------SGLIQNGELDEAARVLVKCGSR-----CDGGEDL------------------ 158
                    GL  N +  +   + VK G       C+   D+                  
Sbjct: 254 SFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLD 313

Query: 159 ---VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
              V ++N +I GYG R   E+A + F ++            ++ + V++ +M+    K+
Sbjct: 314 KHSVVSWNIMISGYGNRCDSEKALECFQRMQC--------CGYEPDDVTYINMLTACVKS 365

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTW---- 267
           GDV   R+IF+ M      SWN ++SGY    D  EA  LF KM     +PD  T     
Sbjct: 366 GDVKVGRQIFDCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAIIL 425

Query: 268 -------------------------------NAMVSGYAQIGNLELALDFFKRMPQKNLV 296
                                          +++++ Y++ G +E++   F ++ + ++V
Sbjct: 426 SSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKLSELDVV 485

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QM 355
            WNSMIAG   N   + A+  F +M+  G  P   +F++I S  + +  L  G QIH Q+
Sbjct: 486 CWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQGQQIHAQI 545

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
           +    + +V + ++L+ MY +CG +  AR  F+ M   KN+V+WN MI G A +G+  EA
Sbjct: 546 IKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPG-KNIVTWNEMIHGYAHNGYGLEA 604

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           + L+K M S    P  ITF++VL+AC+H+ LV+EG + F SM+ ++ + P+++H+  ++D
Sbjct: 605 VSLYKDMISSGEKPDDITFVAVLTACSHSALVDEGVEIFSSMLQKFEVVPKLDHYTCIID 664

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
            +GR GR  +   ++  MP++ D  VW  +L +CRVH NV LA+ AAE L ++ P NS P
Sbjct: 665 CLGRVGRFNEVEVILDTMPYKDDTIVWEVVLSSCRVHANVSLAKRAAEELHRLNPRNSAP 724

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           YVLL NMY+ +GRWDDA  VR LM  N I K  GYS  +F
Sbjct: 725 YVLLANMYSSMGRWDDAQVVRDLMSDNQIHKDPGYSRSEF 764



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 140/528 (26%), Positives = 251/528 (47%), Gaps = 80/528 (15%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           +  A ++FD +P ++  ++N ++S + K+  ++ A RLF  MP RN VS N +I+  ++N
Sbjct: 56  ITSAHHVFDKIPHKNIFSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKN 115

Query: 105 GDVANAIEFFDRMPGRDSASLSALV--------------------SGLIQNGELDE---A 141
           G    A++ +D M   +S   S +                      GL+     D     
Sbjct: 116 GYERQALDTYDLMMVYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYV 175

Query: 142 ARVLVKCGSRCDGGEDLVR-----------AYNTLIVGYGQRGRVEEARKLF-------- 182
           +  L+   ++C   ED  R            + T++ G  Q  +V+E  +LF        
Sbjct: 176 SNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGI 235

Query: 183 --DKIPVN--------------CDRGEG---NVR------------FKRNIVSWNSMIMC 211
             D + ++              CD   G   N +            F+R++   NS++  
Sbjct: 236 CVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDM 295

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTW 267
           YAK GD+ SA  +FE + +    SWN MISGY +  D E+A   F +M      PD +T+
Sbjct: 296 YAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTY 355

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
             M++   + G++++    F  M   +L+SWN++++G   + D+  A++LF +MQ + + 
Sbjct: 356 INMLTACVKSGDVKVGRQIFDCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQN 415

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARII 386
           PDR T + ILS  + +  L  G Q+H +  K     DV + ++LI +Y++CG +  ++ +
Sbjct: 416 PDRTTLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHV 475

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F ++  L +VV WN+MI G + +    +AL  FK MR F   P+  +F ++ S+CA    
Sbjct: 476 FSKLSEL-DVVCWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSS 534

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           + +G+Q    ++ + G    +   +SLV++  + G +  A      MP
Sbjct: 535 LFQGQQIHAQIIKD-GYVDNVFVGSSLVEMYCKCGDVGAARYYFDMMP 581



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 132/546 (24%), Positives = 245/546 (44%), Gaps = 53/546 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y K  +M  A  +F+ + +  VVSWN+MISGY +   S   E+A   F  M     
Sbjct: 292 LLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDS---EKALECFQRMQCCGY 348

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D VT+  +++   K+G+++   ++F+ M + +++SWNA++SG+ Q+ D   A+E F +
Sbjct: 349 EPDDVTYINMLTACVKSGDVKVGRQIFDCMSSPSLISWNAILSGYNQSADHGEAVELFRK 408

Query: 117 MPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
           M  +    D  +L+ ++S   + G L+   +  V   S+  G  D V   ++LI  Y + 
Sbjct: 409 MQFQWQNPDRTTLAIILSSCAELGLLEAGKQ--VHAVSQKLGFYDDVYVASSLINVYSKC 466

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE-- 230
           G++E ++ +F K+             + ++V WNSMI  ++       A   F++M +  
Sbjct: 467 GKMEVSKHVFSKLS------------ELDVVCWNSMIAGFSINSLEQDALACFKRMRQFG 514

Query: 231 --RDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELAL 284
                FS+ T+ S    +  + +   +  ++       +    +++V  Y + G++  A 
Sbjct: 515 FFPSEFSFATIASSCAKLSSLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYCKCGDVGAAR 574

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
            +F  MP KN+V+WN MI G   N     A+ L+  M   GEKPD  TF ++L+  S   
Sbjct: 575 YYFDMMPGKNIVTWNEMIHGYAHNGYGLEAVSLYKDMISSGEKPDDITFVAVLTACSHSA 634

Query: 345 DLHLGMQI-HQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
            +  G++I   M+ K  V+P +     +I    R G   E  +I + M    + + W  +
Sbjct: 635 LVDEGVEIFSSMLQKFEVVPKLDHYTCIIDCLGRVGRFNEVEVILDTMPYKDDTIVWEVV 694

Query: 403 IGGCASHG---FATEALELFKSMRSFKVLPTYITFISVLSACAH-------AGLVEEGRQ 452
           +  C  H     A  A E    +      P Y+   ++ S+            L+ + + 
Sbjct: 695 LSSCRVHANVSLAKRAAEELHRLNPRNSAP-YVLLANMYSSMGRWDDAQVVRDLMSDNQI 753

Query: 453 H----FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           H    +     +Y ++ +   FA++    G     +   DL     F  D ++       
Sbjct: 754 HKDPGYSRSEFKYDVQNKTSFFANMYSCFGNLDDAQFVRDLTSDKQFYKDPSLHYPF--- 810

Query: 509 CRVHNN 514
           C+ +NN
Sbjct: 811 CKTNNN 816



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 148/292 (50%), Gaps = 15/292 (5%)

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
           +  ++ AR IF   L  DTF  N +I  Y     +  A ++F K+PH +  ++NA++S +
Sbjct: 23  SAKIIHAR-IFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKIPHKNIFSYNAILSAF 81

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV-EGEKPDRHTF 333
            +  NL+ A   F +MP++N VS N++I     N     A+  +  M V E  KP   TF
Sbjct: 82  CKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMVYESVKPSHITF 141

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKL 392
           +++ S   G+ D++ G + H +V K     ++ ++NAL+ MY +CG   +A  +FE + +
Sbjct: 142 ATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFEGI-V 200

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA---GLVEE 449
             N V++  M+GG +      E LELF+ M    +    ++  ++L  CA     G+ ++
Sbjct: 201 EPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTILVICAKGVSFGVCDD 260

Query: 450 GR--------QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
            R        +   ++  ++G E  +    SL+D+  + G ++ A ++ + +
Sbjct: 261 SRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENL 312


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 194/505 (38%), Positives = 279/505 (55%), Gaps = 32/505 (6%)

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMP--GRDSASLSALVSGLIQNGELDEAARVL 145
           AR+    ++++  +L+ G   NA   FD MP   R     SALV+     G+ + A R+L
Sbjct: 49  ARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLL 108

Query: 146 VKCGSRCDGG-EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
            +   R DGG E  V  +N L+ G  + GR  +A      + +    GEG +R     VS
Sbjct: 109 EE--MRRDGGVEPNVITWNGLVSGLNRSGRARDA-----VVALATMHGEGLLRPDATGVS 161

Query: 205 WNSMIMCYAKAGDVVSAREIFEQM--------LERDTFSWNTMISGYIHVLDMEEASNLF 256
                 C   A   V    + +Q+           D      +I  Y       E   +F
Sbjct: 162 ------CALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVF 215

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFK----RMPQKNLVSWNSMIAGCETN-KDY 311
            +  H D  + NA+++G ++   +  AL  FK    R  + N+VSW S++A C  N KD 
Sbjct: 216 DESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDL 275

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNAL 370
           E A++ F +MQ +G +P+  T   +L   + +  L  G   H   + K  + DV +++AL
Sbjct: 276 E-AVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSAL 334

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           + MYA+CG + +ARIIF+ M + +NVVSWNAMIGG A +G A  A+ +F SM   K  P 
Sbjct: 335 VDMYAKCGRVKDARIIFDTM-VSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPD 393

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            +TF  +L+AC  AGL EEGR +FK M NEYG+ PR+EH+A +V ++GR G+L++A DLI
Sbjct: 394 MVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLI 453

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
             MPFEPD  +WG+LLG+CRVH NV+LA+VAAE L  +EPEN+  YVLL N+YA    WD
Sbjct: 454 SDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWD 513

Query: 551 DANEVRLLMKSNNIKKPTGYSWVDF 575
             N VR +MK   +KK  G SW++ 
Sbjct: 514 RVNRVREMMKDVGLKKEKGCSWIEI 538



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 194/440 (44%), Gaps = 66/440 (15%)

Query: 24  RDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ERDCVTWNTVISGYAKTGEMEEALR 81
           RD    + ++  Y+    +G    AR LFD MP  +R  V W+ +++ +A  G+ E A R
Sbjct: 50  RDPFVASSLLHAYLRLGTTG---NARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWR 106

Query: 82  LFNSMP-----ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVS- 130
           L   M        NV++WN ++SG  ++G   +A+     M G      D+  +S  +S 
Sbjct: 107 LLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSA 166

Query: 131 ----GLIQNGELDEAARVLVKCGS-------------RCDGGEDLVRAY----------- 162
               GL+  G+      V   C +             +C    ++VR +           
Sbjct: 167 VGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASC 226

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N LI G  +  +V EA +LF +     DRG      + N+VSW S++ C  + G  + A 
Sbjct: 227 NALIAGLSRNAQVCEALRLFKEF---VDRG-----VELNVVSWTSIVACCVQNGKDLEAV 278

Query: 223 EIFEQM----LERDTFSWNTMISGYIHV--LDMEEASNLFV--KMPHPDTLTWNAMVSGY 274
           E F +M     E ++ +   ++  + +V  L    +++ F   K    D    +A+V  Y
Sbjct: 279 EFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMY 338

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
           A+ G ++ A   F  M  +N+VSWN+MI G     +   A+ +F  M    +KPD  TF+
Sbjct: 339 AKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFT 398

Query: 335 SILS--MSSGIVD--LHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM 390
            +L+    +G+ +   H   ++H      V P +     ++T+  R G + EA  +  +M
Sbjct: 399 CLLAACTQAGLTEEGRHYFKEMHN--EYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDM 456

Query: 391 KLLKNVVSWNAMIGGCASHG 410
               +   W +++G C  HG
Sbjct: 457 PFEPDAYIWGSLLGSCRVHG 476



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 138/322 (42%), Gaps = 45/322 (13%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPD--TLTWNAMVSGYAQIGNLELALDF 286
           L RD F  ++++  Y+ +     A  LF  MP P    + W+A+V+ +A  G+ E A   
Sbjct: 48  LARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRL 107

Query: 287 FKRMP-----QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG-EKPDRHTFSSILSMS 340
            + M      + N+++WN +++G   +     A+     M  EG  +PD    S  LS  
Sbjct: 108 LEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAV 167

Query: 341 SGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEE---------- 389
             +  + +G Q+H    K     D  +  ALI MY +CG   E   +F+E          
Sbjct: 168 GDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCN 227

Query: 390 ---------------MKLLK---------NVVSWNAMIGGCASHGFATEALELFKSMRSF 425
                          ++L K         NVVSW +++  C  +G   EA+E F+ M++ 
Sbjct: 228 ALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQ 287

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
              P  +T   VL A A+   +  GR      + + G    +   ++LVD+  + GR++D
Sbjct: 288 GTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRK-GFLHDVYVSSALVDMYAKCGRVKD 346

Query: 486 AMDLIKGMPFEPDKAVWGALLG 507
           A  +   M    +   W A++G
Sbjct: 347 ARIIFDTM-VSRNVVSWNAMIG 367



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 132/298 (44%), Gaps = 36/298 (12%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMI 98
           G   E   +FD     D  + N +I+G ++  ++ EALRLF     R    NVVSW +++
Sbjct: 206 GQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIV 265

Query: 99  SGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
           +  +QNG    A+EFF  M  +    +S ++  ++        L         C +   G
Sbjct: 266 ACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRS--AHCFALRKG 323

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
               V   + L+  Y + GRV++AR +FD +              RN+VSWN+MI  YA 
Sbjct: 324 FLHDVYVSSALVDMYAKCGRVKDARIIFDTM------------VSRNVVSWNAMIGGYAM 371

Query: 215 AGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTL 265
            G+ V+A  +F  ML    + D  ++  +++        EE  + F +M +     P   
Sbjct: 372 YGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRME 431

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE----GAIKLF 318
            +  MV+   + G L+ A D    MP + +   W S++  C  + + +     A KLF
Sbjct: 432 HYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLF 489



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 13/151 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           ++  Y K   +  AR +FD M  R+VVSWN MI GY      G    A ++F  M     
Sbjct: 334 LVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAM---YGEAVNAVWMFHSMLKCKQ 390

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
           + D VT+  +++   + G  EE    F  M     VS     +  M++   + G +  A 
Sbjct: 391 KPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAY 450

Query: 112 EFFDRMPGRDSASL-SALVSGLIQNGELDEA 141
           +    MP    A +  +L+     +G +D A
Sbjct: 451 DLISDMPFEPDAYIWGSLLGSCRVHGNVDLA 481


>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
          Length = 577

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 175/511 (34%), Positives = 278/511 (54%), Gaps = 47/511 (9%)

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           +DC   N  I+       ++ A+     M   NV  +NA+  GF+       ++E + RM
Sbjct: 58  QDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRM 117

Query: 118 PGRDSASLSALV-SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
             RDS S S+   S L++      A+R           GE L    +    G+G   +++
Sbjct: 118 L-RDSVSPSSYTYSSLVKASSF--ASRF----------GESL--QAHIWKFGFGFHVKIQ 162

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
                                         ++I  Y+  G +  AR++F++M ERD  +W
Sbjct: 163 -----------------------------TTLIDFYSATGRIREARKVFDEMPERDDIAW 193

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
            TM+S Y  VLDM+ A++L  +M   +  T N +++GY  +GNLE A   F +MP K+++
Sbjct: 194 TTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDII 253

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SW +MI G   NK Y  AI +F +M  EG  PD  T S+++S  + +  L +G ++H   
Sbjct: 254 SWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYT 313

Query: 357 TKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            +   + DV I +AL+ MY++CG++  A ++F  +   KN+  WN++I G A+HGFA EA
Sbjct: 314 LQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK-KNLFCWNSIIEGLAAHGFAQEA 372

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L++F  M    V P  +TF+SV +AC HAGLV+EGR+ ++SM+++Y I   +EH+  +V 
Sbjct: 373 LKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVH 432

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           +  + G + +A++LI  M FEP+  +WGALL  CR+H N+ +A++A   LM +EP NS  
Sbjct: 433 LFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGY 492

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
           Y LL +MYA+  RW D  E+R  M+   I+K
Sbjct: 493 YFLLVSMYAEQNRWRDVAEIRGRMRELGIEK 523



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 155/327 (47%), Gaps = 37/327 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y     + +ARK+FDEMP+RD ++W  M+S Y   R    ++ A  L + M E++ 
Sbjct: 165 LIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAY---RRVLDMDSANSLANQMSEKNE 221

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            T N +I+GY   G +E+A  LFN MP ++++SW  MI G+ QN     AI  F +M   
Sbjct: 222 ATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEE 281

Query: 121 ----DSASLSALVSGLIQNGELD---EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
               D  ++S ++S     G L+   E     ++ G   D     V   + L+  Y + G
Sbjct: 282 GIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLD-----VYIGSALVDMYSKCG 336

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----L 229
            +E A  +F  +P            K+N+  WNS+I   A  G    A ++F +M    +
Sbjct: 337 SLERALLVFFNLP------------KKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESV 384

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN-----AMVSGYAQIGNLELAL 284
           + +  ++ ++ +   H   ++E   ++  M    ++  N      MV  +++ G +  AL
Sbjct: 385 KPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEAL 444

Query: 285 DFFKRMP-QKNLVSWNSMIAGCETNKD 310
           +    M  + N V W +++ GC  +K+
Sbjct: 445 ELIGNMEFEPNAVIWGALLDGCRIHKN 471


>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 188/562 (33%), Positives = 294/562 (52%), Gaps = 62/562 (11%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEAL 80
           D   WN +I  +  S G+     A  LF +M E     D  + + V+   ++ G ++E +
Sbjct: 89  DXYLWNAVIKSH--SHGTD-PRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGM 145

Query: 81  RLFNSMPARNVVS----WNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG 136
           ++   +    + S     N +I  +L+ G +  A + FDRMP RDS S            
Sbjct: 146 QIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVS------------ 193

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
                                    YN++I GY + G  E AR+LFD +P          
Sbjct: 194 -------------------------YNSMIDGYVKCGSTESARELFDLMPEEM------- 221

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
              +N++SWNSMI  YA+  D V  A ++F +M ++D  SWN+MI GY+    +E+A  L
Sbjct: 222 ---KNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYL 278

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           F  MP  D +TW+ M+ GYA++G +  A   F +MP +++VS+NSMIAG   N+    A+
Sbjct: 279 FDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYNMEAL 338

Query: 316 KLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITM 373
           ++F  M+ E    PD  T   +LS  + +  L   M +H  +V K       +  ALI M
Sbjct: 339 EIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDM 398

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           Y++CG+I  A ++F+ ++  K++  WNAMIGG A HG    A ++   +    + P  IT
Sbjct: 399 YSKCGSIQHAMLVFKGIEN-KSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDIT 457

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           F+ +L+AC+H+GLV+EG   F+ M  ++ IEPR++H+  +VDI+ R G +E A +LI+ M
Sbjct: 458 FVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEM 517

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           P EP+  +W   L AC  H   E  ++ A+ L+     N + YVLL N+YA  G+W D  
Sbjct: 518 PIEPNDVIWRTFLAACNHHKEFETGELVAKHLIWEAGYNPSSYVLLSNLYASFGKWKDVR 577

Query: 554 EVRLLMKSNNIKKPTGYSWVDF 575
            +R +MK   I+K  G SW++ 
Sbjct: 578 RIRTIMKERKIEKVPGCSWIEL 599



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 210/423 (49%), Gaps = 66/423 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--R 58
           +I  Y+K   +  AR++FD MPQRD VS+N MI GY+     G  E AR LFD+MPE  +
Sbjct: 166 LIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVK---CGSTESARELFDLMPEEMK 222

Query: 59  DCVTWNTVISGYAKTGE-MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           + ++WN++ISGYA+T + ++ A +LF+ MP ++++SWN+MI G++++G + +A   FD M
Sbjct: 223 NLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYLFDVM 282

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P RD  + S                                     T+I GY + G V +
Sbjct: 283 PRRDVVTWS-------------------------------------TMIDGYAKLGFVHQ 305

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-----LERD 232
           A+ LFD++P             R++VS+NSMI  Y +    + A EIF  M     L  D
Sbjct: 306 AKTLFDQMP------------HRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPD 353

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN----AMVSGYAQIGNLELALDFFK 288
             +   ++S    +  + +A ++ + +             A++  Y++ G+++ A+  FK
Sbjct: 354 ETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFK 413

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            +  K++  WN+MI G   +   E A  + +Q++    KPD  TF  +L+  S    +  
Sbjct: 414 GIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKE 473

Query: 349 GMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           G+   +++ +   + P +     ++ + +R G+I  A+ + EEM +  N V W   +  C
Sbjct: 474 GLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAAC 533

Query: 407 ASH 409
             H
Sbjct: 534 NHH 536



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 120/260 (46%), Gaps = 22/260 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           MI GY K   + +A+ LFD+MP RDVVS+N MI+GY+ +R   +  EA  +F  M +   
Sbjct: 293 MIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNR---YNMEALEIFSDMEKESH 349

Query: 59  ---DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWN----AMISGFLQNGDVANAI 111
              D  T   V+S  A+ G + +A+ +   +  +          A+I  + + G + +A+
Sbjct: 350 LSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAM 409

Query: 112 EFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
             F  +  +     +A++ GL  +G  + A  +L++   R    +D+   +  L+     
Sbjct: 410 LVFKGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDI--TFVGLLNACSH 467

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LE 230
            G V+E    F+ +           + +  +  +  M+   +++G +  A+ + E+M +E
Sbjct: 468 SGLVKEGLLCFELM-------RRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIE 520

Query: 231 RDTFSWNTMISGYIHVLDME 250
            +   W T ++   H  + E
Sbjct: 521 PNDVIWRTFLAACNHHKEFE 540


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 180/523 (34%), Positives = 289/523 (55%), Gaps = 28/523 (5%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----D 121
           V++ YAK  ++++A ++F+ MP R++VSWN +I+GF QNG    A+E   RM       D
Sbjct: 188 VVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPD 247

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           S +L  ++      G L    + +     R  G   LV     L   Y + G VE AR +
Sbjct: 248 SITLVTVLPAAADVGLL-MVGKSIHGYAIRA-GFAKLVNISTALADMYSKCGSVETARLI 305

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           FD +             ++ +VSWNSM+  Y + G+   A  +FE+MLE         I 
Sbjct: 306 FDGMD------------QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353

Query: 242 GYIHVL----DMEEAS--NLFVKMPH--PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
             +H      D+E     + FV   +   D    N+++S Y++   +++A D F  +  +
Sbjct: 354 EALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGR 413

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
             VSWN+MI G   N     A+  F +M+  G KPD  T  S++   + +        IH
Sbjct: 414 THVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIH 473

Query: 354 QMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
            ++ ++ +  ++ +  AL+ MY++CGAI  AR +F+ M   ++V++WNAMI G  +HG  
Sbjct: 474 GLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD-MISDRHVITWNAMIDGYGTHGLG 532

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
             AL+LF  M+   V P  IT++SV+SAC+H+GLV+EG +HFKSM  +YG+EP ++H+ +
Sbjct: 533 RAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGA 592

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           +VD++GR GR+++A D I+ MP  P   V+GA+LGAC++H N+E+ + AA+ L ++ P+ 
Sbjct: 593 MVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDE 652

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
              +VLL N+YA   +W    EVR  M+   +KK  G S V+ 
Sbjct: 653 GGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVEL 695



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 216/471 (45%), Gaps = 88/471 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +++ Y K R++  A K+FD MP+RD+VSWN +I+G+     +GF ++A  L   M +   
Sbjct: 188 VVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGF---SQNGFAKKALELVLRMQDEGQ 244

Query: 59  --DCVTWNTV---------------ISGYA--------------------KTGEMEEALR 81
             D +T  TV               I GYA                    K G +E A  
Sbjct: 245 RPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARL 304

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRDSASLSAL--VSGLIQNGE 137
           +F+ M  + VVSWN+M+ G++QNG+   AI  F++M   G D   ++ +  +      G+
Sbjct: 305 IFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGD 364

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           L E  + + K   + + G D +   N+LI  Y +  RV+ A  +F+ +            
Sbjct: 365 L-ERGKFVHKFVDQLNLGSD-ISVMNSLISMYSKCKRVDIASDIFNNLN----------- 411

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMI-----------SG 242
             R  VSWN+MI+ YA+ G V  A   F +M    ++ D+F+  ++I           + 
Sbjct: 412 -GRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAK 470

Query: 243 YIHVLDMEEA--SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +IH L +      N+FV           A+V  Y++ G + +A   F  +  +++++WN+
Sbjct: 471 WIHGLIIRSCLDKNIFVT---------TALVDMYSKCGAIHMARKLFDMISDRHVITWNA 521

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM--SSGIVDLHLGMQIHQMVTK 358
           MI G  T+     A+ LF +M+    +P+  T+ S++S    SG+VD  L          
Sbjct: 522 MIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDY 581

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            + P +    A++ +  R G I EA    E M +   +  + AM+G C  H
Sbjct: 582 GLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIH 632



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 123/483 (25%), Positives = 210/483 (43%), Gaps = 61/483 (12%)

Query: 97  MISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
           ++S F + G +  A   F+ +  +  A    ++ G  +N  L+ A   L  C  R D  +
Sbjct: 87  LVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFL--CRMRYDDVK 144

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
            +V  +  L+   G    ++  +++  ++  N         F  N+ +   ++  YAK  
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITN--------SFAANVFAMTGVVNMYAKCR 196

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW----- 267
            +  A ++F++M ERD  SWNT+I+G+      ++A  L ++M      PD++T      
Sbjct: 197 QIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLP 256

Query: 268 ------------------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
                                          A+   Y++ G++E A   F  M QK +VS
Sbjct: 257 AAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVS 316

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WNSM+ G   N + E AI +F +M  EG  P   T    L   + + DL  G  +H+ V 
Sbjct: 317 WNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVD 376

Query: 358 KTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           +  +  D+ + N+LI+MY++C  +  A  IF  +   +  VSWNAMI G A +G  +EAL
Sbjct: 377 QLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLN-GRTHVSWNAMILGYAQNGRVSEAL 435

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
             F  M+S  + P   T +SV+ A A   +    +     ++    ++  I    +LVD+
Sbjct: 436 NCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKW-IHGLIIRSCLDKNIFVTTALVDM 494

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK-----VEPE 531
             + G +  A  L   M  +     W A++     H    L + A +   K     VEP 
Sbjct: 495 YSKCGAIHMARKLFD-MISDRHVITWNAMIDGYGTHG---LGRAALDLFDKMKKGAVEPN 550

Query: 532 NST 534
           + T
Sbjct: 551 DIT 553



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 158/371 (42%), Gaps = 74/371 (19%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER------ 58
           Y K   +  AR +FD M Q+ VVSWN M+ GY+ +   G  E+A  +F+ M E       
Sbjct: 293 YSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQN---GEPEKAIAVFEKMLEEGIDPTG 349

Query: 59  ---------------------------------DCVTWNTVISGYAKTGEMEEALRLFNS 85
                                            D    N++IS Y+K   ++ A  +FN+
Sbjct: 350 VTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNN 409

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDEA 141
           +  R  VSWNAMI G+ QNG V+ A+  F  M       DS ++ +++  L +      A
Sbjct: 410 LNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHA 469

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +       C      V     L+  Y + G +  ARKLFD I              R+
Sbjct: 470 KWIHGLIIRSCLDKNIFVT--TALVDMYSKCGAIHMARKLFDMIS------------DRH 515

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFV 257
           +++WN+MI  Y   G   +A ++F++M    +E +  ++ ++IS   H   ++E    F 
Sbjct: 516 VITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFK 575

Query: 258 KMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDY 311
            M       P    + AMV    + G ++ A DF + MP    +  + +M+  C+ +K+ 
Sbjct: 576 SMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNI 635

Query: 312 E----GAIKLF 318
           E     A KLF
Sbjct: 636 EVGEKAAKKLF 646


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 197/600 (32%), Positives = 319/600 (53%), Gaps = 47/600 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMP----QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP 56
           ++S YVK    + A K+F EM     Q +   ++ +++    SR    LE  R +  ++ 
Sbjct: 173 LMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRD---LEAGRKVHAMVI 229

Query: 57  ----ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIE 112
               ++D  T N ++  Y+K G++  A  +F  +P  +VVSWNA ISG + +G   +A+E
Sbjct: 230 RTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALE 289

Query: 113 FFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTL 165
              +M       +  +LS+++     +G  +   ++   +VK  +  D       A+  L
Sbjct: 290 LLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDN----YIAFG-L 344

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           +  Y + G +++A+K+FD IP            +R++V WN++I   +       A  +F
Sbjct: 345 VDMYAKHGLLDDAKKVFDWIP------------QRDLVLWNALISGCSHGAQHAEALSLF 392

Query: 226 EQMLERDTFSWN-TMISGYIH-------VLDMEEASNLFVKMPH-PDTLTWNAMVSGYAQ 276
            +M  ++ F  N T ++  +        + D  +   L  K+    D+   N ++  Y +
Sbjct: 393 CRM-RKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWK 451

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
              L  A   F++    +++++ SMI         E AIKLF++M  +G  PD    SS+
Sbjct: 452 CDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSL 511

Query: 337 LSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           L+  + +     G Q+H  ++ +  + DV   NAL+  YA+CG+I +A + F  +   K 
Sbjct: 512 LNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPE-KG 570

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           VVSW+AMIGG A HG    AL++F  M    + P +IT  SVL AC HAGLV+E +++F 
Sbjct: 571 VVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFN 630

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
           SM   +GIE   EH+A ++D++GR G+L+DAM+L+  MPF+ + AVWGALL A RVH + 
Sbjct: 631 SMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDP 690

Query: 516 ELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           EL ++AAE L  +EPE S  +VLL N YA  G WDD  +VR LMK + +KK    SWV+ 
Sbjct: 691 ELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVEL 750



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 147/568 (25%), Positives = 248/568 (43%), Gaps = 92/568 (16%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N ++S Y   R  G    AR +FD +P+   V+W+++++ Y+      +AL  F SM + 
Sbjct: 41  NHLLSFYSKCRLPG---SARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSC 97

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
           +V     ++   L+           D   G    +L A+ +GL                 
Sbjct: 98  SVRCNEFVLPVVLKCAP--------DAGFGTQLHAL-AMATGL----------------- 131

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
               GG+  V   N L+  YG  G V+EAR +FD+    C+         RN VSWN ++
Sbjct: 132 ----GGDIFVA--NALVAMYGGFGFVDEARMVFDE--AGCE---------RNTVSWNGLM 174

Query: 210 MCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP--- 262
             Y K      A ++F +M    ++ + F ++ +++      D+E    +   +      
Sbjct: 175 SAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYD 234

Query: 263 -DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            D  T NA+V  Y+++G++ +A   F ++P+ ++VSWN+ I+GC  +   + A++L +QM
Sbjct: 235 KDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQM 294

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAI 380
           +  G  P+  T SSIL   +G    +LG QIH  MV      D  I   L+ MYA+ G +
Sbjct: 295 KSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLL 354

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
            +A+ +F+ +   +++V WNA+I GC+      EAL LF  MR         T  +VL +
Sbjct: 355 DDAKKVFDWIP-QRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKS 413

Query: 441 CAHAGLVEEGRQ-----------------------HFKSMVNEYGIEPRIEH-------F 470
            A    + + RQ                       ++K     Y      +H       F
Sbjct: 414 TASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAF 473

Query: 471 ASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
            S++  + +    EDA+ L   M     +PD  V  +LL AC   +  E  +     L+K
Sbjct: 474 TSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533

Query: 528 VE--PENSTPYVLLYNMYADVGRWDDAN 553
            +   +      L+Y  YA  G  +DA+
Sbjct: 534 RQFMSDVFAGNALVYT-YAKCGSIEDAD 560


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 189/593 (31%), Positives = 312/593 (52%), Gaps = 41/593 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y   +    AR++FD +PQ ++ SWN ++  Y     +G + E    F+ +P+RD 
Sbjct: 47  IVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAY---SKAGLISEMESTFEKLPDRDG 103

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM-----PARNVVSWNAMISGFLQNGDVANAIEFFD 115
           VTWN +I GY+ +G +  A++ +N+M          V+   M+     NG V+   +   
Sbjct: 104 VTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHG 163

Query: 116 RMP--GRDSASL--SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
           ++   G +S  L  S L+      G + +A +V      R          YN+L+ G   
Sbjct: 164 QVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRN------TVMYNSLMGGLLA 217

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--- 228
            G +E+A +LF        RG      +++ VSW +MI   A+ G    A E F +M   
Sbjct: 218 CGMIEDALQLF--------RG-----MEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQ 264

Query: 229 -LERDTFSWNTMI---SGYIHVLDMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELA 283
            L+ D + + +++    G   + + ++     ++    D +   +A++  Y +   L  A
Sbjct: 265 GLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYA 324

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F RM QKN+VSW +M+ G       E A+K+F+ MQ  G  PD +T    +S  + +
Sbjct: 325 KTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANV 384

Query: 344 VDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             L  G Q H + +T  +I  V ++N+L+T+Y +CG I ++  +F EM + ++ VSW AM
Sbjct: 385 SSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNV-RDAVSWTAM 443

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           +   A  G A E ++LF  M    + P  +T   V+SAC+ AGLVE+G+++FK M +EYG
Sbjct: 444 VSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYG 503

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           I P I H++ ++D+  R GRLE+AM  I GMPF PD   W  LL ACR   N+E+ + AA
Sbjct: 504 IVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAA 563

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           E+L++++P +   Y LL ++YA  G+WD   ++R  M+  N+KK  G SW+ +
Sbjct: 564 ESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKW 616



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 161/389 (41%), Gaps = 65/389 (16%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           +TF +N ++  Y  +     A  +F ++P P+  +WN ++  Y++ G +      F+++P
Sbjct: 40  ETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLP 99

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE-GEKPDRHTFSSILSMSSGIVDLHLGM 350
            ++ V+WN +I G   +     A+K +  M  +      R T  ++L +SS    + LG 
Sbjct: 100 DRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGK 159

Query: 351 QIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIF---------------------- 387
           QIH  V K      + + + L+ MYA  G I +A+ +F                      
Sbjct: 160 QIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACG 219

Query: 388 ---EEMKLL----KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
              + ++L     K+ VSW AMI G A +G A EA+E F+ M+   +      F SVL A
Sbjct: 220 MIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPA 279

Query: 441 CAHAGLVEEGRQ------------------------------HFKSMVNEYGIEPRIEHF 470
           C   G + EG+Q                              H+   V +   +  +  +
Sbjct: 280 CGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSW 339

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMP---FEPDKAVWGALLGAC-RVHNNVELAQVAAEALM 526
            ++V   G+ GR E+A+ +   M     +PD    G  + AC  V +  E +Q   +A+ 
Sbjct: 340 TAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAIT 399

Query: 527 KVEPENSTPYVLLYNMYADVGRWDDANEV 555
                  T    L  +Y   G  DD+  +
Sbjct: 400 SGLIHYVTVSNSLVTLYGKCGDIDDSTRL 428


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 194/619 (31%), Positives = 313/619 (50%), Gaps = 103/619 (16%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMI 98
           G L+EA+ + + M ++DCV+WN++I+     G + EAL L  +M       NVV+W+A+I
Sbjct: 183 GSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVI 242

Query: 99  SGFLQNGDVANAIEFFDRMPGR----DSASLSALV------------------------- 129
            GF  N     ++E F RM G     D+ +L++++                         
Sbjct: 243 GGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHELF 302

Query: 130 -SGLIQN---------GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            +G + N         G++  A ++  K   +C        +YNT+IVGY + G V +A+
Sbjct: 303 SNGFVANALVGMYRRCGDMKSAFKIFSKFARKC------AASYNTMIVGYLENGNVGKAK 356

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFS 235
           +LF ++       EG    +R+ +SWN MI  +        A  +F  +L    E D+F+
Sbjct: 357 ELFYQM-----EQEG---VERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFT 408

Query: 236 WNTMISGY-----------IHVL------------------------DMEEASNLFVKMP 260
             ++++G+           IH +                        D+  A   F ++ 
Sbjct: 409 LGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEIS 468

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMP----QKNLVSWNSMIAGCETNKDYEGAIK 316
             DT TWNA++SGYA+   +    +  +RM     + N+ +WNS++AG   NK Y+ A++
Sbjct: 469 ERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQ 528

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYA 375
           LF +MQV   +PD +T   IL+  S +  +H G Q+H    +     D  I   L+ MYA
Sbjct: 529 LFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYA 588

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +CG+I     ++ ++    N+V  NAM+   A HG   E + +F+ M   +V P ++TF+
Sbjct: 589 KCGSIKHCYQVYNKISN-PNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFL 647

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           SVLS+C HAG ++ G + F  M   Y I P ++H+  +VD++ R G+L++A  LIK MP 
Sbjct: 648 SVLSSCVHAGSIKIGYECFYLM-ETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPM 706

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           E D   W ALLG C +H  V L ++AAE L+++EP N+  YVLL N+YA  GRW D  + 
Sbjct: 707 EADSVTWSALLGGCFIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKT 766

Query: 556 RLLMKSNNIKKPTGYSWVD 574
           R LM    ++K  G SW++
Sbjct: 767 RELMNDKGMQKSPGCSWIE 785



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 142/623 (22%), Positives = 274/623 (43%), Gaps = 72/623 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSR--GSGFLEEARYLFDIMPER 58
           ++  Y        A  +FD+M  +++ SW  ++  +++      GF+    +L D + E+
Sbjct: 72  LLQMYSINSSFEDAWHMFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEK 131

Query: 59  -DCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAIE 112
            D   +  V++     G++E   R  + M  +     NV   NA+I  + + G +  A +
Sbjct: 132 LDFFVFPVVLNICCGLGDLELG-RQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKK 190

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
             + M  +D  S +++++  + NG + EA  +L          E  V  ++ +I G+   
Sbjct: 191 VLEGMTQKDCVSWNSIITACVANGVVYEALDLLEN--MLLSELEPNVVTWSAVIGGFSSN 248

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
               E+ +LF ++      G G     R +    S++   ++   +   +E+   ++  +
Sbjct: 249 AYDVESVELFARMV-----GAGVAPDARTLA---SVLPACSRMKWLFVGKELHGYIVRHE 300

Query: 233 TFS----WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
            FS     N ++  Y    DM+ A  +F K       ++N M+ GY + GN+  A + F 
Sbjct: 301 LFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFY 360

Query: 289 RMPQKNL----VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
           +M Q+ +    +SWN MI+G   N  ++ A+ LF  + +EG +PD  T  SIL+  + + 
Sbjct: 361 QMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMT 420

Query: 345 DLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
            +  G +IH + + K +  +  +  AL+ MY +C  I+ A++ F+E+   ++  +WNA+I
Sbjct: 421 CIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEIS-ERDTSTWNALI 479

Query: 404 GGCA----------------SHGFATE-------------------ALELFKSMRSFKVL 428
            G A                S GF                      A++LF  M+   + 
Sbjct: 480 SGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLR 539

Query: 429 PTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
           P   T   +L+AC+    +  G+Q H  S+   Y  +  I   A+LVD+  + G ++   
Sbjct: 540 PDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIG--ATLVDMYAKCGSIKHCY 597

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM--KVEPENSTPYVLLYNMYAD 545
            +   +   P+     A+L A  +H + E   V    ++  +V P++ T ++ + +    
Sbjct: 598 QVYNKIS-NPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVT-FLSVLSSCVH 655

Query: 546 VGRWDDANEVRLLMKSNNIKKPT 568
            G      E   LM++ NI  PT
Sbjct: 656 AGSIKIGYECFYLMETYNI-TPT 677


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 202/611 (33%), Positives = 306/611 (50%), Gaps = 90/611 (14%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARN------------ 90
           G L +AR +FD M ERDCV WN ++ GY K G +  A+ LF  M A              
Sbjct: 195 GLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFL 254

Query: 91  ---------------------------VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
                                      V   N ++S + +   + +  + F  MP  D  
Sbjct: 255 SVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLV 314

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           + + ++SG +QNG +D+A  +L+ C  +  G         +L+          + ++L  
Sbjct: 315 TWNGMISGCVQNGFVDQA--LLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHG 372

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
            I  NC      V     +VS  +++  Y K   V  A+ +++     D    +TMISGY
Sbjct: 373 YIVRNC------VHMDVFLVS--ALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGY 424

Query: 244 IHVLDMEEASNLFVKM------PH--------PDTLTWNAMVSG---------------- 273
           +     +EA  +F  +      P+        P   +  AM  G                
Sbjct: 425 VLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRC 484

Query: 274 ---------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
                    YA+ G L+L+   F ++  K+ V+WNSMI+    N + E A+ LF +M +E
Sbjct: 485 YVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCME 544

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEA 383
           G K    T SS+LS  + +  ++ G +IH +V K  I  D+   +ALI MY +CG +  A
Sbjct: 545 GVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWA 604

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
             +FE M   KN VSWN++I    ++G   E++ L + M+       ++TF++++SACAH
Sbjct: 605 HRVFESMPE-KNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAH 663

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           AG V+EG + F+ M  EY I PR+EHFA +VD+  R G+L+ AM+LI  MPF+PD  +WG
Sbjct: 664 AGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWG 723

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
           ALL ACRVH NVELA++A++ L K++P NS  YVL+ N+ A  GRWD  ++VR LMK   
Sbjct: 724 ALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTK 783

Query: 564 IKKPTGYSWVD 574
           ++K  GYSWVD
Sbjct: 784 VQKIPGYSWVD 794



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 123/471 (26%), Positives = 221/471 (46%), Gaps = 41/471 (8%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFD 115
           D      ++  Y       +A+ +F+S+P   A   + WN +I G    GD  +A+ F+ 
Sbjct: 74  DTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYL 133

Query: 116 RM------PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
           +M      P  DS +   +V      G +  A   LV   +R  G +  +   + LI  Y
Sbjct: 134 KMWAHPSAPLPDSHTFPYVVKSCAALGAI--ALGRLVHRTARTLGLDGDMFVGSALIKMY 191

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
              G + +AR++FD +             +R+ V WN M+  Y KAG V SA E+F  M 
Sbjct: 192 ANGGLLWDARQVFDGMA------------ERDCVLWNVMMDGYVKAGSVSSAVELFGDMR 239

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMP----------HPDTLTWNAMVSGYAQIGN 279
                     ++ ++ V   E  S+LF  +             +    N +VS YA+   
Sbjct: 240 ASGCEPNFATLACFLSVSATE--SDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKC 297

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           L+     F  MP+ +LV+WN MI+GC  N   + A+ LF  MQ  G +PD  T  S+L  
Sbjct: 298 LDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPA 357

Query: 340 SSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            + +   + G ++H  + +  +  DV + +AL+ +Y +C A+  A+ +++  K + +VV 
Sbjct: 358 LTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAI-DVVI 416

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSM 457
            + MI G   +G + EA+++F+ +    + P  +   SVL ACA    ++ G++ H  ++
Sbjct: 417 GSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYAL 476

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
            N Y  E R    ++L+D+  + GRL+ +  +   +  + D+  W +++ +
Sbjct: 477 KNAY--EGRCYVESALMDMYAKCGRLDLSHYIFSKISAK-DEVTWNSMISS 524



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 130/546 (23%), Positives = 217/546 (39%), Gaps = 137/546 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSG---- 43
           +I  Y     +  AR++FD M +RD V WNVM+ GY+ +             R SG    
Sbjct: 187 LIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPN 246

Query: 44  ------FLE----EARYLFDIM---------PERDCVTWNTVISGYAKTGEMEEALRLFN 84
                 FL     E+   F +           E +    NT++S YAK   +++  +LF 
Sbjct: 247 FATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFG 306

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            MP  ++V+WN MISG +QNG V  A+  F  M       DS +L +L+  L      ++
Sbjct: 307 LMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQ 366

Query: 141 AARV------------------LVKCGSRCDGGEDLVRAYN-----------TLIVGYGQ 171
              +                  LV    +C         Y+           T+I GY  
Sbjct: 367 GKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 172 RGRVEEARKLFDKIPVNCDRGE--------------GNVRFKRNIVSW------------ 205
            G  +EA K+F  +     R                  ++  + + S+            
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYV 486

Query: 206 -NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF-------- 256
            ++++  YAK G +  +  IF ++  +D  +WN+MIS +    + EEA NLF        
Sbjct: 487 ESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGV 546

Query: 257 ------------------------------VKMP-HPDTLTWNAMVSGYAQIGNLELALD 285
                                         +K P   D    +A++  Y + GNLE A  
Sbjct: 547 KYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHR 606

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F+ MP+KN VSWNS+IA        + ++ L   MQ EG K D  TF +++S  +    
Sbjct: 607 VFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQ 666

Query: 346 LHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           +  G+++ + +T+   + P +     ++ +Y+R G + +A  +  +M    +   W A++
Sbjct: 667 VQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALL 726

Query: 404 GGCASH 409
             C  H
Sbjct: 727 HACRVH 732


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 201/629 (31%), Positives = 316/629 (50%), Gaps = 85/629 (13%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER------ 58
           Y K  E+ KAR +FD +  +  V+W  +I+GY  S   G  E +  LF++M E       
Sbjct: 187 YAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKS---GRSEVSLQLFNLMMESNVIPDK 243

Query: 59  ---------------------------------DCVTWNTVISGYAKTGEMEEALRLFNS 85
                                            D  T+N +I  Y K G ++    LF+ 
Sbjct: 244 YVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDR 303

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEA 141
           +  +N++SW  MI+G++QN     A+E    M       D  + S++++       L   
Sbjct: 304 LDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHG 363

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            ++       C   ++ V   N LI  Y +   +++A+++FD   V C           +
Sbjct: 364 RQIHSYVIKVCLEHDNFVT--NALIDMYSKCNALDDAKRVFD--VVTC----------HS 409

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQM-LERDTFSWNTMI--------------SGYIHV 246
           +V +N+MI  Y++ G +  A E+F++M L+  + S+ T +              S  IH 
Sbjct: 410 VVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHG 469

Query: 247 LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           L ++   +L       D  T +A++  Y++   +  A   F+    K++V WNS+ +G  
Sbjct: 470 LIIKYGFSL-------DKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYN 522

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP- 365
                E A KL+  +Q+  E+P+  TF+++ + +S +  L  G Q H  V K  +   P 
Sbjct: 523 LQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPF 582

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           I NAL+ MYA+CG++ EA  IF    + K+   WN+MI   A HG   EAL +F++M S 
Sbjct: 583 ITNALVDMYAKCGSVEEAEKIFSS-SVWKDTACWNSMISMYAQHGKVEEALRMFETMVSN 641

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            + P Y+TF+SVLSAC+H G VE+G QH+ SM   YGIEP IEH+AS+V ++GR GRL +
Sbjct: 642 NINPNYVTFVSVLSACSHVGFVEDGLQHYNSMA-RYGIEPGIEHYASVVTLLGRAGRLTE 700

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A + I+ M   P   VW +LL ACRV  NVELA+ AAE  + ++P +S  YV+L N++A 
Sbjct: 701 AREFIEKMTIRPAALVWRSLLSACRVFGNVELAKHAAEMAISIDPMDSGSYVMLSNIFAS 760

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            G W D   +RL M  N + K  G SW++
Sbjct: 761 KGMWGDVKRLRLKMDVNGVVKEPGQSWIE 789



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 131/478 (27%), Positives = 236/478 (49%), Gaps = 59/478 (12%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF-- 114
           + D    N ++  Y K G + +A  LF+ MP RN+VSW++++S + Q G    A+ +F  
Sbjct: 72  QYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLE 131

Query: 115 ------DRMPGRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTL 165
                 D++   +   L++++   +Q    +  ++V   ++K G     GED V    +L
Sbjct: 132 FQRTCVDKL---NEYILASIIRACVQRDGGEPGSQVHSYVIKSGF----GED-VYVGTSL 183

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           +V Y + G +++AR +FD + +            +  V+W ++I  Y K+G    + ++F
Sbjct: 184 VVLYAKHGEIDKARLVFDGLVL------------KTPVTWTAIITGYTKSGRSEVSLQLF 231

Query: 226 EQMLERDTFSWNTMIS---------GY------IHVLDMEEASNLFVKMPHPDTLTWNAM 270
             M+E +      ++S         GY      IH   +   + +       D  T+N +
Sbjct: 232 NLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKM-------DVSTYNVL 284

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK-DYEGAIKLFIQMQVEGEKPD 329
           +  Y + G ++     F R+  KN++SW +MIAG   N  D+E A++L  +M   G KPD
Sbjct: 285 IDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWE-AVELVGEMFRMGWKPD 343

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFE 388
            +  SS+L+    +  L  G QIH  V K  +  D  + NALI MY++C A+ +A+ +F+
Sbjct: 344 EYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFD 403

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
            +    +VV +NAMI G +  G+   ALE+F+ MR   V P+++TF+S+L   A    ++
Sbjct: 404 VVT-CHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQ 462

Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             +Q    ++ +YG        ++L+D+  +   + DA  + +G     D  VW +L 
Sbjct: 463 LSKQ-IHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTT-NKDIVVWNSLF 518



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 164/370 (44%), Gaps = 82/370 (22%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
           L+ D F  N ++  Y  +  + +A  LF KMP+ + ++W+++VS Y Q+G  E AL +F 
Sbjct: 71  LQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFL 130

Query: 289 RMPQKNLVSWN-----SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              +  +   N     S+I  C               +Q +G +P               
Sbjct: 131 EFQRTCVDKLNEYILASIIRAC---------------VQRDGGEP--------------- 160

Query: 344 VDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
                G Q+H  V K+    DV +  +L+ +YA+ G I +AR++F+ + +LK  V+W A+
Sbjct: 161 -----GSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGL-VLKTPVTWTAI 214

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEY 461
           I G    G +  +L+LF  M    V+P      S+L+AC+  G ++ G+Q H   + +E 
Sbjct: 215 ITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSET 274

Query: 462 GIEPRIEHFASLVDIVGRHGRLE------DAMD---------LIKG-------------- 492
            ++  +  +  L+D   + GR++      D +D         +I G              
Sbjct: 275 KMD--VSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELV 332

Query: 493 -----MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV--EPENSTPYVLLYNMYAD 545
                M ++PD+    ++L +C   + ++  +     ++KV  E +N     L+ +MY+ 
Sbjct: 333 GEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALI-DMYSK 391

Query: 546 VGRWDDANEV 555
               DDA  V
Sbjct: 392 CNALDDAKRV 401


>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
          Length = 612

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 187/562 (33%), Positives = 296/562 (52%), Gaps = 62/562 (11%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEAL 80
           D   WNV+I  +  S G     +A +L  +M E     D  +++  +   ++ G ++E  
Sbjct: 92  DPFLWNVVIKSH--SHGVD-PRKALFLLCLMLENGVPVDKFSFSLALKACSRLGFVKEGT 148

Query: 81  R----LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG 136
           +    L  +    ++   N +I  +++ G +  A + FDRMP RDS S            
Sbjct: 149 QVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVS------------ 196

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
                                    YN++I GY + G VE A +LF  +P          
Sbjct: 197 -------------------------YNSMIDGYLKCGLVESAGELFGLMP---------- 221

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
           R KRN+++WNSMI  YA+  D V+ A ++F++M E+D  SWN+MI GY+    +E+A  L
Sbjct: 222 REKRNLITWNSMIGGYAQRADGVNVAAKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGL 281

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           F  MP  D +TW  M+ GY ++G +  A   F +MP +++V +NSM++G   N+ +  A+
Sbjct: 282 FDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMPHRDVVVYNSMMSGXVQNRYHMEAL 341

Query: 316 KLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV-PINNALITM 373
           ++F  M+ E    PD  +   +LS  + +  L   + +H  + +   P    +  ALI M
Sbjct: 342 EVFNHMEKESHLTPDETSLVIVLSAXAQLGRLSKAIDMHLYIVEKQFPSSGKLGVALIDM 401

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           Y++CG+I  A  +FE ++  K++  WNAMIGG A HG    A ++   +    + P +IT
Sbjct: 402 YSKCGSIQHAMRVFEGIES-KSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHIT 460

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           F+ VL+AC+H+GLV+EG   F+ M  ++ IEPR++H+  +VDI+ R G +E A +LI+GM
Sbjct: 461 FVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKNLIEGM 520

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           P EP+  +W   L AC  H   E  ++ A+ L+     N + YVLL NMYA  G W D  
Sbjct: 521 PIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASNGMWKDVR 580

Query: 554 EVRLLMKSNNIKKPTGYSWVDF 575
            VR +MK  NI+K  G SW++ 
Sbjct: 581 RVRTMMKEKNIEKIPGCSWIEL 602



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 181/394 (45%), Gaps = 69/394 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMP--QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           MI GY+K   +  A +LF  MP  +R++++WN MI GY + R  G +  A  LFD MPE+
Sbjct: 200 MIDGYLKCGLVESAGELFGLMPREKRNLITWNSMIGGY-AQRADG-VNVAAKLFDEMPEK 257

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D ++WN++I GY K G +E+A  LF+ MP R+VV+W  MI G+ + G V  A   FD+MP
Sbjct: 258 DLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMP 317

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV---GYGQRGRV 175
            RD    ++++SG +QN    EA  V     +  +    L     +L++      Q GR+
Sbjct: 318 HRDVVVYNSMMSGXVQNRYHMEALEVF----NHMEKESHLTPDETSLVIVLSAXAQLGRL 373

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
            +A  +   I        G +          ++I  Y+K G +  A  +FE +  +    
Sbjct: 374 SKAIDMHLYIVEKQFPSSGKLGV--------ALIDMYSKCGSIQHAMRVFEGIESKSIDH 425

Query: 236 WNTMISGY-IHVLDMEEASNLFVKMPH----PDTLT------------------------ 266
           WN MI G  +H L  E A ++ +++      PD +T                        
Sbjct: 426 WNAMIGGLAVHGLG-ESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELM 484

Query: 267 ------------WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEG 313
                       +  MV   A+ G++ELA +  + MP + N V W + +  C  +K++E 
Sbjct: 485 RRKHKIEPRLQHYGCMVDILARSGSIELAKNLIEGMPIEPNDVIWRTFLTACSHHKEFET 544

Query: 314 ----AIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
               A  L +Q    G  P  +   S +  S+G+
Sbjct: 545 GELVAKHLILQ---AGYNPSSYVLLSNMYASNGM 575


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 202/611 (33%), Positives = 306/611 (50%), Gaps = 90/611 (14%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARN------------ 90
           G L +AR +FD M ERDCV WN ++ GY K G +  A+ LF  M A              
Sbjct: 195 GLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFL 254

Query: 91  ---------------------------VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
                                      V   N ++S + +   + +  + F  MP  D  
Sbjct: 255 SVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLV 314

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           + + ++SG +QNG +D+A  +L+ C  +  G         +L+          + ++L  
Sbjct: 315 TWNGMISGCVQNGFVDQA--LLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHG 372

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
            I  NC      V     +VS  +++  Y K   V  A+ +++     D    +TMISGY
Sbjct: 373 YIVRNC------VHMDVFLVS--ALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGY 424

Query: 244 IHVLDMEEASNLFVKM------PH--------PDTLTWNAMVSG---------------- 273
           +     +EA  +F  +      P+        P   +  AM  G                
Sbjct: 425 VLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRC 484

Query: 274 ---------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
                    YA+ G L+L+   F ++  K+ V+WNSMI+    N + E A+ LF +M +E
Sbjct: 485 YVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCME 544

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEA 383
           G K    T SS+LS  + +  ++ G +IH +V K  I  D+   +ALI MY +CG +  A
Sbjct: 545 GVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWA 604

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
             +FE M   KN VSWN++I    ++G   E++ L + M+       ++TF++++SACAH
Sbjct: 605 HRVFESMPE-KNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAH 663

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           AG V+EG + F+ M  EY I PR+EHFA +VD+  R G+L+ AM+LI  MPF+PD  +WG
Sbjct: 664 AGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWG 723

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
           ALL ACRVH NVELA++A++ L K++P NS  YVL+ N+ A  GRWD  ++VR LMK   
Sbjct: 724 ALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTK 783

Query: 564 IKKPTGYSWVD 574
           ++K  GYSWVD
Sbjct: 784 VQKIPGYSWVD 794



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 123/471 (26%), Positives = 221/471 (46%), Gaps = 41/471 (8%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFD 115
           D      ++  Y       +A+ +F+S+P   A   + WN +I G    GD  +A+ F+ 
Sbjct: 74  DTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYL 133

Query: 116 RM------PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
           +M      P  DS +   +V      G +  A   LV   +R  G +  +   + LI  Y
Sbjct: 134 KMWAHPSAPLPDSHTFPYVVKSCAALGAI--ALGRLVHRTARTLGLDGDMFVGSALIKMY 191

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
              G + +AR++FD +             +R+ V WN M+  Y KAG V SA E+F  M 
Sbjct: 192 ANGGLLWDARQVFDGMA------------ERDCVLWNVMMDGYVKAGSVSSAVELFGDMR 239

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMP----------HPDTLTWNAMVSGYAQIGN 279
                     ++ ++ V   E  S+LF  +             +    N +VS YA+   
Sbjct: 240 ASGCEPNFATLACFLSVSATE--SDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKC 297

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           L+     F  MP+ +LV+WN MI+GC  N   + A+ LF  MQ  G +PD  T  S+L  
Sbjct: 298 LDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPA 357

Query: 340 SSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            + +   + G ++H  + +  +  DV + +AL+ +Y +C A+  A+ +++  K + +VV 
Sbjct: 358 LTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAI-DVVI 416

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSM 457
            + MI G   +G + EA+++F+ +    + P  +   SVL ACA    ++ G++ H  ++
Sbjct: 417 GSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYAL 476

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
            N Y  E R    ++L+D+  + GRL+ +  +   +  + D+  W +++ +
Sbjct: 477 KNAY--EGRCYVESALMDMYAKCGRLDLSHYIFSKISAK-DEVTWNSMISS 524



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 130/546 (23%), Positives = 217/546 (39%), Gaps = 137/546 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSG---- 43
           +I  Y     +  AR++FD M +RD V WNVM+ GY+ +             R SG    
Sbjct: 187 LIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPN 246

Query: 44  ------FLE----EARYLFDIM---------PERDCVTWNTVISGYAKTGEMEEALRLFN 84
                 FL     E+   F +           E +    NT++S YAK   +++  +LF 
Sbjct: 247 FATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFG 306

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            MP  ++V+WN MISG +QNG V  A+  F  M       DS +L +L+  L      ++
Sbjct: 307 LMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQ 366

Query: 141 AARV------------------LVKCGSRCDGGEDLVRAYN-----------TLIVGYGQ 171
              +                  LV    +C         Y+           T+I GY  
Sbjct: 367 GKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 172 RGRVEEARKLFDKIPVNCDRGE--------------GNVRFKRNIVSW------------ 205
            G  +EA K+F  +     R                  ++  + + S+            
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYV 486

Query: 206 -NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF-------- 256
            ++++  YAK G +  +  IF ++  +D  +WN+MIS +    + EEA NLF        
Sbjct: 487 ESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGV 546

Query: 257 ------------------------------VKMP-HPDTLTWNAMVSGYAQIGNLELALD 285
                                         +K P   D    +A++  Y + GNLE A  
Sbjct: 547 KYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHR 606

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F+ MP+KN VSWNS+IA        + ++ L   MQ EG K D  TF +++S  +    
Sbjct: 607 VFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQ 666

Query: 346 LHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           +  G+++ + +T+   + P +     ++ +Y+R G + +A  +  +M    +   W A++
Sbjct: 667 VQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALL 726

Query: 404 GGCASH 409
             C  H
Sbjct: 727 HACRVH 732


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 174/497 (35%), Positives = 268/497 (53%), Gaps = 42/497 (8%)

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGEL 138
           A  +F+ +P+ +   WN MI  +L + +   ++  F +M  ++   + +    L      
Sbjct: 57  ARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSL------ 110

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
                V+  CG   D G         L +G G    VE A                    
Sbjct: 111 -----VIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETA-------------------- 145

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK 258
                    +I  YAK GD+  AR I ++M   D   +N +++ Y+ V ++  A +LF +
Sbjct: 146 ---------LIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDR 196

Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
           MP  D ++WN M+ G+A +G++  A   F R  +++L+SW+SMIA     +    A++LF
Sbjct: 197 MPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLF 256

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARC 377
            +MQ+    PD+ T  S+LS    +  L +G  IH+ + +  I  D+ +  +L+ MYA+C
Sbjct: 257 HEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKC 316

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G I  +  +F  M   ++V +W+AMI G A+HGF   AL+ F  M S  + P  +TFI V
Sbjct: 317 GDIDNSLRVFNGMNN-RDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGV 375

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           LSAC+H GLV+EG  +F SM   Y + P+IEH+  +VDI+GR GRL++AM+LIK MPF P
Sbjct: 376 LSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAP 435

Query: 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
           D  VW ALLGACR++ NVE+A+ A   L+++EP     YVLL N+Y+    WD    VR 
Sbjct: 436 DAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRR 495

Query: 558 LMKSNNIKKPTGYSWVD 574
           +MK+ NI+K  G S ++
Sbjct: 496 MMKNINIQKVPGSSSIE 512



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 188/454 (41%), Gaps = 116/454 (25%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNT---- 65
           ++  AR +FDE+P  D   WN MI  Y++S+     +E+  LF  M  ++C+  ++    
Sbjct: 53  DLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNP---QESMSLFFQMRHQECIPIDSYSLS 109

Query: 66  ------------------------------------VISGYAKTGEMEEALRLFNSMPAR 89
                                               +I  YAK G++E A  + + M   
Sbjct: 110 LVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHP 169

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
           ++V +N +++ +++ G++  A + FDRMP RD  S                         
Sbjct: 170 DLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVS------------------------- 204

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
                       +NT+I G+   G V  A+KLFD+    C+         R+++SW+SMI
Sbjct: 205 ------------WNTMIHGHASLGDVGTAKKLFDR---TCE---------RDLISWSSMI 240

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWN-TMIS-----GYIHVLDMEEASNLFVKMPHP- 262
             YAKA     A  +F +M   +      TM+S     G +  L M        KM H  
Sbjct: 241 AAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMG-------KMIHEC 293

Query: 263 --------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
                   D     ++V  YA+ G+++ +L  F  M  +++ +W++MI G   +   E A
Sbjct: 294 IERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELA 353

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALIT 372
           +  F +M  E  KP+  TF  +LS  S I  +  G      ++K   V P +     ++ 
Sbjct: 354 LDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVD 413

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           +  R G + EA  + + M    + + W A++G C
Sbjct: 414 ILGRAGRLQEAMELIKSMPFAPDAIVWRALLGAC 447


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 208/627 (33%), Positives = 312/627 (49%), Gaps = 69/627 (11%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS------------------RGSG 43
           +S YV+R  M  A  LF+ M Q D   WNVMI G++ +                  RG  
Sbjct: 67  LSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDN 126

Query: 44  F-----LEEARYLFDIMP-ER------------DCVTWNTVISGYAKTGEMEEALRLFNS 85
           F     ++    L+D+   ER            D    N++I  YAK G +E A  +F  
Sbjct: 127 FTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFRE 186

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEA 141
           MP R++VSWN+MISG++  GD   ++  F  M       D  S+  ++      G L   
Sbjct: 187 MPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNG 246

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +   C       E  V    +L+  Y + GR++ A +LFD+I              ++
Sbjct: 247 KEI--HCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQIT------------DKS 292

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF--SWNTMISGYIHVLDMEEASNLFVKM 259
           IV+WN+MI  Y+       +     +M E       W TMI+       +E    L  K 
Sbjct: 293 IVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAI--LLGKS 350

Query: 260 PH---------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
            H         P  +   A+V  Y + G L+ A   F +M ++NL+SWN+MIA    N +
Sbjct: 351 VHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGE 410

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNA 369
              A+ LF  +  +  KPD  T +SIL   + +  L    QIH  VTK  +  +  ++N+
Sbjct: 411 NRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNS 470

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           ++ MY +CG ++ AR IF+ M   K+V+SWN +I   A HGF   ++ELF  MR     P
Sbjct: 471 IVFMYGKCGNLLRAREIFDRMTF-KDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEP 529

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
              TF+S+L +C+ AGLV EG ++F SM  +Y I P IEH+  ++D++GR G L+ A + 
Sbjct: 530 NGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNF 589

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
           I+ MP  P   +WG+LL A R   +VELA++AAE ++ +E +N+  YVLL NMYA+ GRW
Sbjct: 590 IEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRW 649

Query: 550 DDANEVRLLMKSNNIKKPTGYSWVDFS 576
           +D   ++  MK   ++K  G S VD S
Sbjct: 650 EDVERIKFHMKKEGLEKSVGCSVVDLS 676



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 138/509 (27%), Positives = 230/509 (45%), Gaps = 47/509 (9%)

Query: 54  IMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEF 113
            + ER+ V+    +S Y + G M+ AL LF +M   +   WN MI GF+ NG   +A++F
Sbjct: 54  FLVERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDF 113

Query: 114 FDRMP----GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVG 168
           + RM       D+ +   ++       +L E  RV    G     G DL +   N+LI+ 
Sbjct: 114 YHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVH---GKVIKSGLDLDIYIGNSLIIM 170

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y + G +E A  +F ++PV            R++VSWNSMI  Y   GD   +   F +M
Sbjct: 171 YAKIGCIESAEMVFREMPV------------RDLVSWNSMISGYVSVGDGWRSLSCFREM 218

Query: 229 ----LERDTFSWNTMISGYIHVLDME----EASNLFVKMPHP----DTLTWNAMVSGYAQ 276
               ++ D FS    + G +    +E        +  +M       D +   ++V  YA+
Sbjct: 219 QASGIKLDRFS----VIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAK 274

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSS 335
            G ++ A   F ++  K++V+WN+MI G   N     +     +MQ  G+  PD  T  +
Sbjct: 275 CGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMIN 334

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +L   + +  + LG  +H    +   +P + +  AL+ MY  CG +  A  +F +M   +
Sbjct: 335 LLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMN-ER 393

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           N++SWNAMI     +G   +A+ LF+ + +  + P   T  S+L A A    + E  Q  
Sbjct: 394 NLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQ-I 452

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN- 513
              V +  ++       S+V + G+ G L  A ++   M F+ D   W  ++ A  +H  
Sbjct: 453 HGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFK-DVISWNTVIMAYAIHGF 511

Query: 514 ---NVELAQVAAEALMKVEPENSTPYVLL 539
              ++EL     E     EP  ST   LL
Sbjct: 512 GRISIELFSEMREK--GFEPNGSTFVSLL 538



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 204/459 (44%), Gaps = 61/459 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS---------------------S 39
           +I  Y K   +  A  +F EMP RD+VSWN MISGY+S                      
Sbjct: 167 LIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLD 226

Query: 40  RGS-----------GFLEEARYLFDIM----PERDCVTWNTVISGYAKTGEMEEALRLFN 84
           R S           GFL   + +   M     E D +   +++  YAK G M+ A RLF+
Sbjct: 227 RFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFD 286

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--GRDSASLSALVSGLIQNGELDEAA 142
            +  +++V+WNAMI G+  N     +  +  +M   G+       +++ L    +L+   
Sbjct: 287 QITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAIL 346

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVG-YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
                 G     G        T +V  YG+ G+++         P  C  G+ N   +RN
Sbjct: 347 LGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLK---------PAECLFGQMN---ERN 394

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNL-- 255
           ++SWN+MI  Y K G+   A  +F+ +    L+ D  +  +++  Y  +  + EA  +  
Sbjct: 395 LISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHG 454

Query: 256 FVKMPHPDTLTW--NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
           +V     D+ T+  N++V  Y + GNL  A + F RM  K+++SWN++I     +     
Sbjct: 455 YVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRI 514

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNALI 371
           +I+LF +M+ +G +P+  TF S+L   S    ++ G +    + +   + P +     ++
Sbjct: 515 SIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCIL 574

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            +  R G +  A+   EEM L      W +++    + G
Sbjct: 575 DLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKG 613


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 195/596 (32%), Positives = 316/596 (53%), Gaps = 39/596 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGF-LEEARYLFDIMP--- 56
           M+ GY K   +  A + ++ M   +V+      +  +   G    L   R +  ++    
Sbjct: 113 MLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNG 172

Query: 57  -ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
            + +      V++ YAK  ++E+A ++F  MP R++VSWN +++G+ QNG    A++   
Sbjct: 173 FQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVL 232

Query: 116 RM--PGRDSASLSALVSGLIQNGELD--EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
           +M   G+   S++ LVS L    +L      R +     R  G E +V     ++  Y +
Sbjct: 233 QMQEAGQKPDSIT-LVSVLPAVADLKALRIGRSIHGYAFRA-GFEYMVNVATAMLDTYFK 290

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G V  AR +F  +              RN+VSWN+MI  YA+ G+   A   F +ML+ 
Sbjct: 291 CGSVRSARLVFKGMS------------SRNVVSWNTMIDGYAQNGESEEAFATFLKMLDE 338

Query: 232 DTFSWNTMISGYIHVL----DMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELA 283
                N  + G +H      D+E    +   +       D    N+++S Y++   +++A
Sbjct: 339 GVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIA 398

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F  +  K +V+WN+MI G   N     A+ LF +MQ    KPD  T  S+++    +
Sbjct: 399 ASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVIT---AL 455

Query: 344 VDLHLGMQ---IHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
            DL +  Q   IH +  +T++  +V +  ALI  +A+CGAI  AR +F+ M+  ++V++W
Sbjct: 456 ADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQE-RHVITW 514

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           NAMI G  ++G   EAL+LF  M++  V P  ITF+SV++AC+H+GLVEEG  +F+SM  
Sbjct: 515 NAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKE 574

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
            YG+EP ++H+ ++VD++GR GRL+DA   I+ MP +P   V GA+LGACR+H NVEL +
Sbjct: 575 NYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGE 634

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
             A+ L  ++P++   +VLL NMYA    WD    VR  M+   I+K  G S V+ 
Sbjct: 635 KTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVEL 690



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 141/574 (24%), Positives = 241/574 (41%), Gaps = 141/574 (24%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
           +IS + K   + EA R+F  +  +  V ++ M+ G+ +N  + +A+ F++RM        
Sbjct: 82  LISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERM-------- 133

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
                                    RCD    +V  +  L+   G+   +   R++   +
Sbjct: 134 -------------------------RCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMV 168

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
             N         F+ N+ +  +++  YAK   +  A ++FE+M +RD  SWNT+++GY  
Sbjct: 169 ITN--------GFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQ 220

Query: 246 ----------VLDMEEASNLFVKMPHPDTLTW---------------------------- 267
                     VL M+EA         PD++T                             
Sbjct: 221 NGFARRAVQVVLQMQEAGQ------KPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGF 274

Query: 268 -------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                   AM+  Y + G++  A   FK M  +N+VSWN+MI G   N + E A   F++
Sbjct: 275 EYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLK 334

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGA 379
           M  EG +P   +    L   + + DL  G  +H+++ +  I  DV + N+LI+MY++C  
Sbjct: 335 MLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKR 394

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           +  A  +F  +K  K VV+WNAMI G A +G   EAL LF  M+S  + P   T +SV++
Sbjct: 395 VDIAASVFGNLK-HKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVIT 453

Query: 440 ACA---------------------------------HA--GLVEEGRQHFKSMVNEYGIE 464
           A A                                 HA  G ++  R+ F  M   + I 
Sbjct: 454 ALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT 513

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNVELAQVA 521
                + +++D  G +G   +A+DL   M     +P++  + +++ AC     VE     
Sbjct: 514 -----WNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYY 568

Query: 522 AEALMK---VEPENSTPYVLLYNMYADVGRWDDA 552
            E++ +   +EP     Y  + ++    GR DDA
Sbjct: 569 FESMKENYGLEP-TMDHYGAMVDLLGRAGRLDDA 601


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 208/632 (32%), Positives = 334/632 (52%), Gaps = 75/632 (11%)

Query: 1   MISGYVKRREMAKARKLFDEM-PQRDVVSWNVMISGY----------------------- 36
           +IS Y K  +   AR +F+ M  +RD+VSW+ M+S +                       
Sbjct: 85  LISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP 144

Query: 37  -----------ISSRGSGFLEEARYLFDIMP---ERDCVTWNTVISGYAK-TGEMEEALR 81
                       S+    ++ E  Y F +     E D      +I  + K +G++  A +
Sbjct: 145 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK 204

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F+ MP RN+V+W  MI+ F Q G   +AI+ F  M       D  + S+++S   + G 
Sbjct: 205 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 264

Query: 138 LDEAARV---LVKCGSRCDG--GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           L    ++   +++ G   D   G  LV  Y          G V+++RK+F+++P      
Sbjct: 265 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC----AADGSVDDSRKVFEQMP------ 314

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDV-VSAREIFEQMLE----RDTFSWNTMISGYIHVL 247
                 + N++SW ++I  Y ++G+    A E+F +M+      + FS+++++    ++ 
Sbjct: 315 ------EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 368

Query: 248 DM---EEASNLFVKMPHPDT-LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
           D    E+  +  VK+         N+++S YA+ G +E A   F  + +KNLVS+N+++ 
Sbjct: 369 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 428

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIP 362
           G   N   E A  LF ++   G      TF+S+LS ++ I  +  G QIH +++      
Sbjct: 429 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKS 488

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           +  I NALI+MY+RCG I  A  +F EM+  +NV+SW +MI G A HGFAT ALE+F  M
Sbjct: 489 NQCICNALISMYSRCGNIEAAFQVFNEMED-RNVISWTSMITGFAKHGFATRALEMFHKM 547

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
                 P  IT+++VLSAC+H G++ EG++HF SM  E+GI PR+EH+A +VD++GR G 
Sbjct: 548 LETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGL 607

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           L +AM+ I  MP   D  VW  LLGACRVH N EL + AAE +++ EP++   Y+LL N+
Sbjct: 608 LVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNL 667

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +A  G+W D  ++R  MK  N+ K  G SW++
Sbjct: 668 HASAGQWKDVVKIRKSMKERNLIKEAGCSWIE 699



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 147/570 (25%), Positives = 260/570 (45%), Gaps = 75/570 (13%)

Query: 11  MAKARKLFDEMPQR----DVVSWNVMISGYISSRGSGFLEEA-RYLFDIMPERDCVTWNT 65
           +  A    D M Q+    D+ ++++++   I  R     +   R L     E D V  NT
Sbjct: 25  LHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNT 84

Query: 66  VISGYAKTGEMEEALRLFNSM-PARNVVSWNAMISGFLQNGDVANAI-EFFDRM------ 117
           +IS Y+K G+ E A  +F  M   R++VSW+AM+S F  N     AI  F D +      
Sbjct: 85  LISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP 144

Query: 118 ------------PGRDSASLSALVSG-LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT 164
                          + A +  ++ G +++ G L+  A V V C        +L+   + 
Sbjct: 145 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLE--ADVCVGC--------ELI---DM 191

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
            + G G  G    A K+FDK+P            +RN+V+W  MI  +A+ G    A ++
Sbjct: 192 FVKGSGDLG---SAYKVFDKMP------------ERNLVTWTLMITRFAQLGCARDAIDL 236

Query: 225 FEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQ 276
           F  M       D F++++++S    +  +     L  ++       D     ++V  YA+
Sbjct: 237 FLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAK 296

Query: 277 I---GNLELALDFFKRMPQKNLVSWNSMI-AGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
               G+++ +   F++MP+ N++SW ++I A  ++ +  + AI+LF +M     +P+  +
Sbjct: 297 CAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFS 356

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV-PINNALITMYARCGAIVEARIIFEEMK 391
           FSS+L     + D + G Q++    K  I  V  + N+LI+MYAR G + +AR  F+ + 
Sbjct: 357 FSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDIL- 415

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             KN+VS+NA++ G A +  + EA  LF  +    +  +  TF S+LS  A  G + +G 
Sbjct: 416 FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGE 475

Query: 452 Q-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
           Q H + +   Y     I +  +L+ +  R G +E A  +   M  + +   W +++    
Sbjct: 476 QIHGRLLKGGYKSNQCICN--ALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFA 532

Query: 511 VHNNVELAQVAAEALMKVEPENSTPYVLLY 540
            H     A  A E   K+    + P  + Y
Sbjct: 533 KHG---FATRALEMFHKMLETGTKPNEITY 559


>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
          Length = 579

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 189/562 (33%), Positives = 295/562 (52%), Gaps = 62/562 (11%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEAL 80
           D   WN MI  +  S G+     A  LF +M E     D  + + V+   ++ G ++  L
Sbjct: 51  DPYLWNAMIKSH--SHGTD-PRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGL 107

Query: 81  RLFNSMPARNVVS----WNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG 136
           ++   +    + S     N +I  +L+ G +  A + FDRMP RDS S            
Sbjct: 108 QIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVS------------ 155

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
                                    YN++I GY + G +E A +LFD +P          
Sbjct: 156 -------------------------YNSMIDGYVKCGSIESASELFDLMP---------- 180

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
           R  +N++SWNS+I  YA+  + V  A ++F +M E+D  SWN+MI GY+    +E+A +L
Sbjct: 181 REMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDL 240

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           F  +P  D +TW  M+ GYA++G +  A   F +MP +++V++NSM+AG   N+ +  A+
Sbjct: 241 FDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHMEAL 300

Query: 316 KLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITM 373
           ++F  M+ E    PD  T   +LS  + +  L   M +H  +V K  +    +  ALI M
Sbjct: 301 EIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDM 360

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           Y++CG+I  A ++FE ++  K++  WNAMIGG A HG    A ++   +    + P  IT
Sbjct: 361 YSKCGSIQHAMLVFEGIEN-KSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDIT 419

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           F+ VL+AC+H+GLV+EG   F+ M  ++ IEPR++H+  +VDI+ R G +E A +LI+ M
Sbjct: 420 FVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEM 479

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           P EP+  +W   L AC  H   E  ++ A+ L+     N + YVLL NMYA  G W D  
Sbjct: 480 PIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQADYNPSSYVLLSNMYASFGMWKDVR 539

Query: 554 EVRLLMKSNNIKKPTGYSWVDF 575
            VR +MK   I+K  G SW++ 
Sbjct: 540 RVRTMMKERKIEKIPGCSWIEL 561



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 171/359 (47%), Gaps = 62/359 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQ--RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           MI GYVK   +  A +LFD MP+  ++++SWN +ISGY  ++ S  ++ A  LF  MPE+
Sbjct: 159 MIDGYVKCGSIESASELFDLMPREMKNLISWNSLISGY--AQTSEGVDIASKLFAEMPEK 216

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D ++WN++I GY K G +E+A  LF+ +P R+VV+W  MI G+ + G V  A   FD+MP
Sbjct: 217 DLISWNSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMP 276

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV---GYGQRGRV 175
            RD  + +++++G +QN    EA  +     S  +    L     TL++      Q GR+
Sbjct: 277 HRDVVAYNSMMAGYVQNRFHMEALEIF----SDMEKESHLSPDETTLVIVLSAIAQLGRL 332

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
            +A  +   I        G +          ++I  Y+K G +  A  +FE +  +    
Sbjct: 333 SKAMDMHLYIVEKQFLLGGKLGV--------ALIDMYSKCGSIQHAMLVFEGIENKSIDH 384

Query: 236 WNTMISGY-IHVLDMEEASNLFVKMPH----PDTLT------------------------ 266
           WN MI G  IH L  E A ++ +++      PD +T                        
Sbjct: 385 WNAMIGGLAIHGLG-ESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELM 443

Query: 267 ------------WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
                       +  MV   ++ G++ELA +  + MP + N V W + +  C  +K++E
Sbjct: 444 RRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFE 502


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 196/630 (31%), Positives = 326/630 (51%), Gaps = 76/630 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQ--RDVVSWNVMISGYISS----------RGS------ 42
           +I  Y K   +  A ++F+ + Q  RDV SWN ++SG + +          RG       
Sbjct: 205 LIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFP 264

Query: 43  ----------------GFLEEARYLFDIMPERDC---VTWNTVISGYAKTGEMEEALRLF 83
                           G L   R L   + +      +  N ++  YAK G ++ ALR+F
Sbjct: 265 MNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVDSALRVF 324

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGL-----IQ 134
             +  ++ +SWN+M+S ++QN   A AI+FF  M       D A + +L S L     + 
Sbjct: 325 GQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLN 384

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           NG    A  +  +  +    G       NTL+  Y + G +E + K+F+ + +       
Sbjct: 385 NGREFHAYAIKQRLHTDLQVG-------NTLMDMYIKCGSIECSAKVFESMGI------- 430

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASN 254
                R+ +SW +++ C+A++     A E+  + L+++    ++M+ G I        S 
Sbjct: 431 -----RDHISWTTILACFAQSSRHSEALEMILE-LQKEGIMVDSMMIGSILETCCGLKSI 484

Query: 255 LFVKMPHP--------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
             +K  H         D +  N ++  Y + G  + +L+ F+R+ +K++VSW SMI  C 
Sbjct: 485 SLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCT 544

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVP 365
            N    GA+ LF +MQ    +PD     SIL   +G+  L  G Q+H  + +   P + P
Sbjct: 545 NNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGP 604

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           + ++L+ MY+ CG++  A  +FE  K  K+VV W AMI     HG   +A++LFK M   
Sbjct: 605 VVSSLVDMYSGCGSMNYAIRVFERAKC-KDVVLWTAMINATGMHGHGKQAIDLFKRMLQT 663

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            + P +++F+++L AC+H+ LVEEG+ +   MV++Y ++P  EH+A +VDI+GR G+ E+
Sbjct: 664 GLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEE 723

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A + IK MP +P  AVW ALLGACRVH N  LA VAA  L+++EP+N   Y+L+ N++A+
Sbjct: 724 AYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAE 783

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           +G+W++A E R  M    ++K    SW++ 
Sbjct: 784 MGKWNNAKETRTRMAERGLRKNPACSWIEI 813



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 149/591 (25%), Positives = 267/591 (45%), Gaps = 91/591 (15%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP----------------- 56
           AR+LF+ MP R V SWN ++  Y+SS  +G   EA  ++  M                  
Sbjct: 114 ARRLFNGMPARTVFSWNALVGAYLSSGSAG---EAMRVYGAMRASAAPGSAPDGCTLASV 170

Query: 57  -------------------------ERDCVTWNTVISGYAKTGEMEEALRLFN--SMPAR 89
                                    ++  +  N +I  YAK G ++ ALR+F      AR
Sbjct: 171 LKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDAR 230

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRM-----PGRDSASLSALVS----GLIQNGELDE 140
           +V SWN+++SG +QNG    A+  F  M     P     S++ L      GL+  G    
Sbjct: 231 DVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELH 290

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           AA  L+KCGS      +L    N L+V Y + GRV+ A ++F +I             ++
Sbjct: 291 AA--LLKCGS------ELNIQCNALLVMYAKYGRVDSALRVFGQIA------------EK 330

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLF 256
           + +SWNSM+ CY +      A + F +ML+     D     ++ S   H+  +       
Sbjct: 331 DYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFH 390

Query: 257 V----KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
                +  H D    N ++  Y + G++E +   F+ M  ++ +SW +++A    +  + 
Sbjct: 391 AYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHS 450

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALIT 372
            A+++ +++Q EG   D     SIL    G+  + L  Q+H    +  + D+ + N LI 
Sbjct: 451 EALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDLILENRLID 510

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           +Y  CG    +  +F+ ++  K++VSW +MI  C ++G    A+ LF  M+   + P  +
Sbjct: 511 IYGECGEFDHSLNLFQRVE-KKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSV 569

Query: 433 TFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
             +S+L A A    + +G+Q H   +   + IE  +   +SLVD+    G +  A+ + +
Sbjct: 570 ALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPV--VSSLVDMYSGCGSMNYAIRVFE 627

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENSTPYVLLY 540
               + D  +W A++ A  +H + + A    + +++  + P++ +   LLY
Sbjct: 628 RAKCK-DVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLY 677



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 167/358 (46%), Gaps = 29/358 (8%)

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           L+  YG+ GRV++AR+LF+ +P             R + SWN+++  Y  +G    A  +
Sbjct: 101 LVFMYGRCGRVDDARRLFNGMPA------------RTVFSWNALVGAYLSSGSAGEAMRV 148

Query: 225 FEQMLER---DTFSWNTMISGYIHVLDME-------EASNLFVKMP-HPDTLTWNAMVSG 273
           +  M       +      ++  +     E       E   L VK+     TL  NA++  
Sbjct: 149 YGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGM 208

Query: 274 YAQIGNLELALDFFKRMPQ--KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
           YA+ G L+ AL  F+ + Q  +++ SWNS+++GC  N     A+ LF  MQ  G   + +
Sbjct: 209 YAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSY 268

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
           T  ++L + + +  L LG ++H  + K         NAL+ MYA+ G +  A  +F ++ 
Sbjct: 269 TSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVDSALRVFGQIA 328

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             K+ +SWN+M+     + F  EA++ F  M      P +   +S+ SA  H   +  GR
Sbjct: 329 -EKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGR 387

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           + F +   +  +   ++   +L+D+  + G +E +  + + M    D   W  +L AC
Sbjct: 388 E-FHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIR-DHISWTTIL-AC 442



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 131/257 (50%), Gaps = 9/257 (3%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D      +V  Y + G ++ A   F  MP + + SWN+++    ++     A++++  M+
Sbjct: 94  DGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMR 153

Query: 323 VE---GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCG 378
                G  PD  T +S+L       D   G ++H +  K  +     + NALI MYA+CG
Sbjct: 154 ASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCG 213

Query: 379 AIVEARIIFEEMKL-LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
            +  A  +FE ++   ++V SWN+++ GC  +G   EAL LF+ M+S        T ++V
Sbjct: 214 LLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAV 273

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           L  CA  GL+  GR+   +++ + G E  I+  A LV +  ++GR++ A+ +  G   E 
Sbjct: 274 LQVCAELGLLSLGRELHAALL-KCGSELNIQCNALLV-MYAKYGRVDSALRVF-GQIAEK 330

Query: 498 DKAVWGALLGACRVHNN 514
           D   W ++L +C V N+
Sbjct: 331 DYISWNSML-SCYVQNS 346


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 208/632 (32%), Positives = 334/632 (52%), Gaps = 75/632 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMP-QRDVVSWNVMISGY----------------------- 36
           +IS Y K  +   AR +F+ M  +RD+VSW+ M+S +                       
Sbjct: 67  LISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP 126

Query: 37  -----------ISSRGSGFLEEARYLFDIMP---ERDCVTWNTVISGYAK-TGEMEEALR 81
                       S+    ++ E  Y F +     E D      +I  + K +G++  A +
Sbjct: 127 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK 186

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F+ MP RN+V+W  MI+ F Q G   +AI+ F  M       D  + S+++S   + G 
Sbjct: 187 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 246

Query: 138 LDEAARV---LVKCGSRCDG--GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           L    ++   +++ G   D   G  LV  Y          G V+++RK+F+++P      
Sbjct: 247 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC----AADGSVDDSRKVFEQMP------ 296

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDV-VSAREIFEQMLE----RDTFSWNTMISGYIHVL 247
                 + N++SW ++I  Y ++G+    A E+F +M+      + FS+++++    ++ 
Sbjct: 297 ------EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 350

Query: 248 DM---EEASNLFVKMPHPDT-LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
           D    E+  +  VK+         N+++S YA+ G +E A   F  + +KNLVS+N+++ 
Sbjct: 351 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 410

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIP 362
           G   N   E A  LF ++   G      TF+S+LS ++ I  +  G QIH +++      
Sbjct: 411 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKS 470

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           +  I NALI+MY+RCG I  A  +F EM+  +NV+SW +MI G A HGFAT ALE+F  M
Sbjct: 471 NQCICNALISMYSRCGNIEAAFQVFNEMED-RNVISWTSMITGFAKHGFATRALEMFHKM 529

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
                 P  IT+++VLSAC+H G++ EG++HF SM  E+GI PR+EH+A +VD++GR G 
Sbjct: 530 LETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGL 589

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           L +AM+ I  MP   D  VW  LLGACRVH N EL + AAE +++ EP++   Y+LL N+
Sbjct: 590 LVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNL 649

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +A  G+W D  ++R  MK  N+ K  G SW++
Sbjct: 650 HASAGQWKDVVKIRKSMKERNLIKEAGCSWIE 681



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 147/570 (25%), Positives = 260/570 (45%), Gaps = 75/570 (13%)

Query: 11  MAKARKLFDEMPQR----DVVSWNVMISGYISSRGSGFLEEA-RYLFDIMPERDCVTWNT 65
           +  A    D M Q+    D+ ++++++   I  R     +   R L     E D V  NT
Sbjct: 7   LHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNT 66

Query: 66  VISGYAKTGEMEEALRLFNSMP-ARNVVSWNAMISGFLQNGDVANAI-EFFDRM------ 117
           +IS Y+K G+ E A  +F  M   R++VSW+AM+S F  N     AI  F D +      
Sbjct: 67  LISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP 126

Query: 118 ------------PGRDSASLSALVSG-LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT 164
                          + A +  ++ G +++ G L+  A V V C        +L+   + 
Sbjct: 127 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLE--ADVCVGC--------ELI---DM 173

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
            + G G  G    A K+FDK+P            +RN+V+W  MI  +A+ G    A ++
Sbjct: 174 FVKGSGDLG---SAYKVFDKMP------------ERNLVTWTLMITRFAQLGCARDAIDL 218

Query: 225 FEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQ 276
           F  M       D F++++++S    +  +     L  ++       D     ++V  YA+
Sbjct: 219 FLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAK 278

Query: 277 I---GNLELALDFFKRMPQKNLVSWNSMI-AGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
               G+++ +   F++MP+ N++SW ++I A  ++ +  + AI+LF +M     +P+  +
Sbjct: 279 CAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFS 338

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV-PINNALITMYARCGAIVEARIIFEEMK 391
           FSS+L     + D + G Q++    K  I  V  + N+LI+MYAR G + +AR  F ++ 
Sbjct: 339 FSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF-DIL 397

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             KN+VS+NA++ G A +  + EA  LF  +    +  +  TF S+LS  A  G + +G 
Sbjct: 398 FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGE 457

Query: 452 Q-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
           Q H + +   Y     I +  +L+ +  R G +E A  +   M  + +   W +++    
Sbjct: 458 QIHGRLLKGGYKSNQCICN--ALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFA 514

Query: 511 VHNNVELAQVAAEALMKVEPENSTPYVLLY 540
            H     A  A E   K+    + P  + Y
Sbjct: 515 KHG---FATRALEMFHKMLETGTKPNEITY 541


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 189/564 (33%), Positives = 297/564 (52%), Gaps = 62/564 (10%)

Query: 23  QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEE 78
           Q +   WN +I  +  S G     EA  +F++M E     D  +++ V+   ++ G ++E
Sbjct: 84  QDNPFLWNAIIKSF--SHGED-PREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKE 140

Query: 79  ALRLFNSMP----ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQ 134
            +++   +       +V   N ++  +L+ G +  A + FDRM  RDS S          
Sbjct: 141 GMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVS---------- 190

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
                                      +N++I GY + G V+ AR+LFD +P+       
Sbjct: 191 ---------------------------FNSMIDGYVKHGMVKSARELFDVMPME------ 217

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDTFSWNTMISGYIHVLDMEEAS 253
               ++N++SWNSMI  YA++ + +  A E+FE+M +RD  SWN+MI G +    ME A 
Sbjct: 218 ----QKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAH 273

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
           +LF +MP  D ++W  MV GYA++G +++A   F  MP+++++S N+M+AG   N     
Sbjct: 274 HLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLME 333

Query: 314 AIKLFIQMQVEGEK-PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALI 371
           A+  F  M    E  PD  T    LS  + +     G+ +H  +          +  ALI
Sbjct: 334 ALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALI 393

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            MYA+CG+I  A  +FE++   K++  WNA+IGG A HG    A ELF  M    V P  
Sbjct: 394 DMYAKCGSIDNALSVFEDIDD-KSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVKPDD 452

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           ITFI VL+AC HAGLV+EG   F+ M   + +EP+++H+  +VDI+GR G +E+A   ++
Sbjct: 453 ITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMVDILGRAGHVEEAKKFVE 512

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
            MP EP+  VW  LL ACR H N  + +  A+ L+ V+  N + YVLL N+YA  G W+D
Sbjct: 513 KMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVLLSNIYAGFGMWND 572

Query: 552 ANEVRLLMKSNNIKKPTGYSWVDF 575
              +R++MK  ++KK  G S ++ 
Sbjct: 573 VYRIRMMMKQRDLKKIPGCSQIEL 596



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 206/424 (48%), Gaps = 76/424 (17%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ERDCVT 62
           Y++   +  AR+LFD M +RD VS+N MI GY+     G ++ AR LFD+MP  +++ ++
Sbjct: 167 YLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVK---HGMVKSARELFDVMPMEQKNLIS 223

Query: 63  WNTVISGYAKTGE-MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           WN++ISGYA++ E +  A  LF  MP R+++SWN+MI G ++ G + NA   F++MP RD
Sbjct: 224 WNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRD 283

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S + +V G                                     Y + G ++ AR L
Sbjct: 284 VVSWANMVDG-------------------------------------YAKLGEIDIARGL 306

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-----DTFSW 236
           FD++P            +R+++S N+M+  Y + G ++ A   F  ML R     D  + 
Sbjct: 307 FDEMP------------ERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATL 354

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPD-TLTWN---AMVSGYAQIGNLELALDFFKRMPQ 292
              +S    +   +E   L   +     +L+     A++  YA+ G+++ AL  F+ +  
Sbjct: 355 LITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDD 414

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS-------MSSGIVD 345
           K++  WN++I G   +   E A +LF++M+    KPD  TF  +L+       +  G++ 
Sbjct: 415 KSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMC 474

Query: 346 LHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             L  ++H+     V P +     ++ +  R G + EA+   E+M +  N V W  ++  
Sbjct: 475 FELMRRVHK-----VEPKLQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSA 529

Query: 406 CASH 409
           C +H
Sbjct: 530 CRNH 533



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 175/358 (48%), Gaps = 62/358 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMP--QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           MI GYVK   +  AR+LFD MP  Q++++SWN MISGY  +R    L  A  LF+ MP+R
Sbjct: 194 MIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGY--ARSEEGLRVAWELFEEMPKR 251

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D ++WN++I G  K G+ME A  LFN MP R+VVSW  M+ G+ + G++  A   FD MP
Sbjct: 252 DLISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMP 311

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV---GYGQRGRV 175
            RD  S +A+++G +QNG L EA        SR    ++L     TL++      Q G  
Sbjct: 312 ERDVISCNAMMAGYVQNGHLMEALNFFHDMLSR----KELFPDNATLLITLSAIAQLGHF 367

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
           +E       + ++C   +        +    ++I  YAK G + +A  +FE + ++    
Sbjct: 368 DEG------VALHCYIEDNGFSLSEKLGV--ALIDMYAKCGSIDNALSVFEDIDDKSIDH 419

Query: 236 WNTMISGY-IHVLDMEEASNLFVKMP----HPDTLT------------------------ 266
           WN +I G  IH L  E A  LF++M      PD +T                        
Sbjct: 420 WNAIIGGLAIHGLG-EVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELM 478

Query: 267 ------------WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDY 311
                       +  MV    + G++E A  F ++MP + N V W ++++ C  ++++
Sbjct: 479 RRVHKVEPKLQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENF 536


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 192/627 (30%), Positives = 323/627 (51%), Gaps = 78/627 (12%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
            + +AR +FD+MP +++ S N+++S Y S   SG L  A++LF   P R+  TW  ++  
Sbjct: 272 HLHRARAMFDQMPHKNIFSLNLILSAYSS---SGDLPAAQHLFLSSPHRNATTWTIMMRA 328

Query: 70  YAKTGEMEEALRLFNSM------PARNVVS----------------------------WN 95
           +A  G   +AL LF +M      P R  V+                             N
Sbjct: 329 HAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCN 388

Query: 96  AMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR------------ 143
            ++  + ++G +A A   F  M  +D+ + +A++ G  + G   +A +            
Sbjct: 389 TLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSR 448

Query: 144 ----VLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
               +L    SR      L V   N+L+  Y +   +++ R+LFD++P            
Sbjct: 449 HPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMP------------ 496

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMIS-----GYIHVLDM 249
           +R+ VS+N +I  YA      +   +F +M     +R    + TM+S       +H+   
Sbjct: 497 ERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQ 556

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
             A  + + +   D L  NA++  Y++ G L+ A   F    +K+ +SW ++I G   N 
Sbjct: 557 IHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNG 615

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINN 368
            +E A++LF  M+  G +PDR TFSSI+  SS +  + LG Q+H  + ++     V   +
Sbjct: 616 QHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGS 675

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
            L+ MYA+CG + EA   F+EM   +N +SWNA+I   A +G A  A+++F+ M      
Sbjct: 676 VLVDMYAKCGCLDEALRTFDEMP-ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFN 734

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P  +TF+SVL+AC+H GL +E  ++F  M ++Y I P  EH+A ++D +GR G       
Sbjct: 735 PDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQK 794

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           ++  MPF+ D  +W ++L +CR+H N ELA+VAA+ L  +EP ++TPYV+L N+YA  G+
Sbjct: 795 MLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQ 854

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVDF 575
           W+DA  V+ +M+   ++K +GYSWV+ 
Sbjct: 855 WEDAACVKKIMRDRGVRKESGYSWVEI 881



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 172/413 (41%), Gaps = 100/413 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGF--- 44
           ++  Y K   +A AR++F EM  +D V++N M+ G             + + R +G+   
Sbjct: 390 LLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRH 449

Query: 45  -----------------------------------LEEARYLFDIMPERDCVTWNTVISG 69
                                              L++ R LFD MPERD V++N +I+ 
Sbjct: 450 PLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAA 509

Query: 70  YAKTGEMEEALRLFNSMPA----RNVVSWNAMIS--GFLQNGDVANAIEFFDRMPGRDSA 123
           YA        LRLF  M      R V+ +  M+S  G L +  +   I     + G  S 
Sbjct: 510 YAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASE 569

Query: 124 SL--SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
            L  +AL+    + G LD A        +  +  E    ++  LI GY Q G+ EEA +L
Sbjct: 570 DLLGNALIDMYSKCGMLDAAK------SNFSNRSEKSAISWTALITGYVQNGQHEEALQL 623

Query: 182 FD---KIPVNCDR----------------GEGN------VR--FKRNIVSWNSMIMCYAK 214
           F    +  +  DR                G G       +R  +K ++ S + ++  YAK
Sbjct: 624 FSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAK 683

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAM 270
            G +  A   F++M ER++ SWN +IS Y H  + + A  +F  M H    PD++T+ ++
Sbjct: 684 CGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSV 743

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYEGAIKLFIQMQ 322
           ++  +  G  +  + +F  M  +  +S W    A C    D  G +  F Q+Q
Sbjct: 744 LAACSHNGLADECMKYFHLMKHQYSISPWKEHYA-CVI--DTLGRVGCFSQVQ 793



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 103/233 (44%), Gaps = 46/233 (19%)

Query: 1   MISGYVKRREMAKARKLFDEM------PQRDVVSWNV-------MI------------SG 35
           +I+GYV+  +  +A +LF +M      P R   S  +       MI            SG
Sbjct: 607 LITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSG 666

Query: 36  YISS--RGS---------GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           Y SS   GS         G L+EA   FD MPER+ ++WN VIS YA  GE + A+++F 
Sbjct: 667 YKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFE 726

Query: 85  SMPA----RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS-----LSALVSGLIQN 135
            M       + V++ ++++    NG     +++F  M  + S S      + ++  L + 
Sbjct: 727 GMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRV 786

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
           G   +  ++LV+   + D        ++  I G  +  RV  A KLF   P +
Sbjct: 787 GCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARV-AADKLFGMEPTD 838


>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
          Length = 577

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 175/511 (34%), Positives = 278/511 (54%), Gaps = 47/511 (9%)

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           +DC   N  I+       ++ A+     M   NV  +NA+  GF+       ++E + RM
Sbjct: 58  QDCRLMNQFITACTSFKCLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRM 117

Query: 118 PGRDSASLSALV-SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
             RDS S S+   S L++      A+R           GE L    +    G+G   +++
Sbjct: 118 L-RDSVSPSSYTYSSLVKASSF--ASRF----------GESL--QAHIWKFGFGFHVKIQ 162

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
                                         ++I  Y+  G +  AR++F++M ERD  +W
Sbjct: 163 -----------------------------TTLIDFYSATGGIREARKVFDEMPERDDIAW 193

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
            TM+S Y  VLDM+ A++L  +M   +  T N +++GY  +GNLE A   F +MP K+++
Sbjct: 194 TTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDII 253

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SW +MI G   NK Y  AI +F +M  EG  PD  T S+++S  + +  L +G ++H   
Sbjct: 254 SWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYT 313

Query: 357 TKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            +   + DV I +AL+ MY++CG++  A ++F  +   KN+  WN++I G A+HGFA EA
Sbjct: 314 LQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK-KNLFCWNSIIEGLAAHGFAQEA 372

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L++F  M    V P  +TF+SV +AC HAGLV+EGR+ ++SM+++Y I   +EH+  +V 
Sbjct: 373 LKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVH 432

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           +  + G + +A++LI  M FEP+  +WGALL  CR+H N+ +A++A   LM +EP NS  
Sbjct: 433 LFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGY 492

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
           Y LL +MYA+  RW D  E+R  M+   I+K
Sbjct: 493 YFLLVSMYAEQNRWRDVAEIRGRMRELGIEK 523



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 155/327 (47%), Gaps = 37/327 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y     + +ARK+FDEMP+RD ++W  M+S Y   R    ++ A  L + M E++ 
Sbjct: 165 LIDFYSATGGIREARKVFDEMPERDDIAWTTMVSAY---RRVLDMDSANSLANQMSEKNE 221

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            T N +I+GY   G +E+A  LFN MP ++++SW  MI G+ QN     AI  F +M   
Sbjct: 222 ATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEE 281

Query: 121 ----DSASLSALVSGLIQNGELD---EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
               D  ++S ++S     G L+   E     ++ G   D     V   + L+  Y + G
Sbjct: 282 GIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLD-----VYIGSALVDMYSKCG 336

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----L 229
            +E A  +F  +P            K+N+  WNS+I   A  G    A ++F +M    +
Sbjct: 337 SLERALLVFFNLP------------KKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESV 384

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN-----AMVSGYAQIGNLELAL 284
           + +  ++ ++ +   H   ++E   ++  M    ++  N      MV  +++ G +  AL
Sbjct: 385 KPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEAL 444

Query: 285 DFFKRMP-QKNLVSWNSMIAGCETNKD 310
           +    M  + N V W +++ GC  +K+
Sbjct: 445 ELIGNMEFEPNAVIWGALLDGCRIHKN 471


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 193/593 (32%), Positives = 316/593 (53%), Gaps = 41/593 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y   R    AR++FD +PQ ++ SWN ++  Y     SG L E    F+ +P+RD 
Sbjct: 44  IVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAY---SKSGHLSEMERTFEKLPDRDG 100

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMP---ARNV--VSWNAMISGFLQNGDVANAIEFFD 115
           VTWN +I GY+ +G +  A++ +N+M    + N+  V+   M+     NG V+   +   
Sbjct: 101 VTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHG 160

Query: 116 RMP--GRDSASL--SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
           ++   G +S  L  S L+    + G + +A +V      R          YNTL+ G   
Sbjct: 161 QVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRN------TVMYNTLMGGLLA 214

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--- 228
            G +E+A +LF        RG      +++ VSW++MI   A+ G    A E F +M   
Sbjct: 215 CGMIEDALQLF--------RG-----MEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIE 261

Query: 229 -LERDTFSWNTMI---SGYIHVLDMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELA 283
            L+ D + + +++    G   + D  +     ++    D +   +A++  Y +   L  A
Sbjct: 262 GLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYA 321

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F RM QKN+VSW +M+ G         A+K+F+ MQ  G  PD +T    +S  + I
Sbjct: 322 KTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANI 381

Query: 344 VDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             L  G Q H + +T  +I  + ++N+L+T+Y +CG I ++  +F EM + ++ VSW AM
Sbjct: 382 SSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNV-RDEVSWTAM 440

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           +   A  G A EA++LF  M    + P  +T   V+SAC+ AGLVE+G+++F+ M+NEYG
Sbjct: 441 VSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYG 500

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           I P   H++ ++D+  R GR+E+AM  I GMPF PD   W  LL ACR   N+E+ + AA
Sbjct: 501 IVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAA 560

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           E+L++++P +   Y LL ++YA  G+WD   ++R  MK  N++K  G SW+ +
Sbjct: 561 ESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKW 613



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 223/459 (48%), Gaps = 53/459 (11%)

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
           +P  +    N ++  YA       A R+F+ +P  N+ SWN ++  + ++G ++     F
Sbjct: 33  LPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSGHLSEMERTF 92

Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAAR---VLVKCGSRCDGGEDLVR-AYNTLIVGYG 170
           +++P RD  + + L+ G   +G +  A +    ++K     D   +L R    T++    
Sbjct: 93  EKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMK-----DFSSNLTRVTLMTMLKLSS 147

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
             G V   +++  ++          + F+  ++  + ++  Y+K G +  A+++F  + +
Sbjct: 148 SNGHVSLGKQIHGQVI--------KLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDD 199

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRM 290
           R+T  +NT++ G +    +E+A  LF  M   D+++W+AM+ G AQ G           M
Sbjct: 200 RNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSWSAMIKGLAQNG-----------M 247

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
            ++                    AI+ F +M++EG K D++ F S+L    G+  ++ G 
Sbjct: 248 EKE--------------------AIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGR 287

Query: 351 QIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           QIH  + +T + D + + +ALI MY +C  +  A+ +F+ MK  KNVVSW AM+ G    
Sbjct: 288 QIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMK-QKNVVSWTAMVVGYGQT 346

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G A EA+++F  M+   + P + T    +SACA+   +EEG Q F       G+   I  
Sbjct: 347 GRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQ-FHGKAITAGLIHYITV 405

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
             SLV + G+ G ++D+  L   M    D+  W A++ A
Sbjct: 406 SNSLVTLYGKCGDIDDSTRLFNEMNVR-DEVSWTAMVSA 443



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 151/398 (37%), Gaps = 96/398 (24%)

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG-------CE 306
           N+   +PHP+T   N +V  YA I +   A   F  +PQ NL SWN+++          E
Sbjct: 28  NIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSGHLSE 87

Query: 307 TNKDYE------------------------GAIKLFIQMQVE-GEKPDRHTFSSILSMSS 341
             + +E                         A+K +  M  +      R T  ++L +SS
Sbjct: 88  MERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSS 147

Query: 342 GIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIF------------- 387
               + LG QIH  V K      + + + L+ MY++ G I +A+ +F             
Sbjct: 148 SNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNT 207

Query: 388 ------------EEMKLL----KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
                       + ++L     K+ VSW+AMI G A +G   EA+E F+ M+   +    
Sbjct: 208 LMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQ 267

Query: 432 ITFISVLSACAHAGLVEEGRQ------------------------------HFKSMVNEY 461
             F SVL AC   G + +GRQ                              H+   V + 
Sbjct: 268 YPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDR 327

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP---FEPDKAVWGALLGAC-RVHNNVEL 517
             +  +  + ++V   G+ GR  +A+ +   M     +PD    G  + AC  + +  E 
Sbjct: 328 MKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEG 387

Query: 518 AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           +Q   +A+        T    L  +Y   G  DD+  +
Sbjct: 388 SQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRL 425


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 185/577 (32%), Positives = 306/577 (53%), Gaps = 60/577 (10%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G ++ A   F  +     +  N+++ GYAK+  ++ AL +F SMP R+VVSWN +IS   
Sbjct: 208 GAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALS 267

Query: 103 QNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
           ++G V  A++    M G+    DS + ++ ++   +   L+   ++ V+        +  
Sbjct: 268 KSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPY 327

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           V +   ++  Y + G  +EA+++F  +              RN VSW  +I  + + G  
Sbjct: 328 VAS--AMVELYAKCGCFKEAKRVFSSLR------------DRNSVSWTVLIGGFLQYGCF 373

Query: 219 VSAREIFEQM----LERDTFSWNTMISGYIHVLD-------------------------- 248
             + E+F QM    +  D F+  T+ISG  + +D                          
Sbjct: 374 SESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSL 433

Query: 249 ---------MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
                    ++ A  +F  M   D ++W  M++ Y+Q+GN+  A +FF  M  +N+++WN
Sbjct: 434 ISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWN 493

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEK-PDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           +M+     +   E  +K++  M  E +  PD  T+ ++    + I    LG QI     K
Sbjct: 494 AMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVK 553

Query: 359 T-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
             +I D  + NA+ITMY++CG I EAR  F+ +   K++VSWNAMI G + HG   +A+E
Sbjct: 554 VGLILDTSVVNAVITMYSKCGRISEARKAFDFLSR-KDLVSWNAMITGYSQHGMGKQAIE 612

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           +F  + +    P YI++++VLS C+H+GLVEEG+ +F  M  ++ I P +EHF+ +VD++
Sbjct: 613 IFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLL 672

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
           GR G L +A +LI  MP +P   VWGALL AC+ H N +LA++AA+ L  ++   S  Y+
Sbjct: 673 GRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYM 732

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           LL  MYAD G+ DD+ +VR LM+   IKK  GYSW++
Sbjct: 733 LLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWME 769



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 150/586 (25%), Positives = 264/586 (45%), Gaps = 100/586 (17%)

Query: 8   RREMAKARKLFDEMPQRDVVS----WNVMISGYISSRGSGFLEEARYLF-DIMPERDCVT 62
           R  +  AR L   +    + S     N ++  Y+S    G L +AR L  D + E + +T
Sbjct: 38  RSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSC---GALSDARNLLRDEITEPNVIT 94

Query: 63  WNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF-------D 115
            N +++GYAK G + +A+ LF  MP R+V SWN ++SG+ Q+G   NA++ F       D
Sbjct: 95  HNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGD 154

Query: 116 RMP-----GRDSASLSAL--------VSGLIQNGELDEAARV-------LVKCGSRCDGG 155
            +P     G    S  AL        + GL+   +  +   V       LV+CG+     
Sbjct: 155 SLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFAS 214

Query: 156 EDLVR-------AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
           +   R         N+++VGY +   V+ A ++F  +P            +R++VSWN +
Sbjct: 215 KQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMP------------ERDVVSWNMV 262

Query: 209 IMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVK----MP 260
           I   +K+G V  A ++   M    +  D+ ++ + ++    +  +E    L V+    +P
Sbjct: 263 ISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLP 322

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
           H D    +AMV  YA+ G  + A   F  +  +N VSW  +I G      +  +++LF Q
Sbjct: 323 HIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQ 382

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGA 379
           M+ E    D+   ++++S     +D+ LG Q+H +  K+     V ++N+LI+MYA+CG 
Sbjct: 383 MRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGN 442

Query: 380 IVEARIIFEEMK------------------------------LLKNVVSWNAMIGGCASH 409
           +  A +IF  M                                 +NV++WNAM+G    H
Sbjct: 443 LQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQH 502

Query: 410 GFATEALELFKSMRSFK-VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           G   + L+++  M + K V+P ++T++++   CA  G  + G Q     V + G+     
Sbjct: 503 GAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTV-KVGLILDTS 561

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPF--EPDKAVWGALLGACRVH 512
              +++ +  + GR+ +A    K   F    D   W A++     H
Sbjct: 562 VVNAVITMYSKCGRISEAR---KAFDFLSRKDLVSWNAMITGYSQH 604



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 204/435 (46%), Gaps = 61/435 (14%)

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           + L+   +  G L +A  +L     R +  E  V  +N ++ GY + G + +A +LF ++
Sbjct: 64  NTLLHAYLSCGALSDARNLL-----RDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRM 118

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-----DTFSWNTMI 240
           P             R++ SWN+++  Y ++G  ++A +IF  M +      + F++  ++
Sbjct: 119 PT------------RDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVM 166

Query: 241 S---------------GYIHVLD--------------------MEEASNLFVKMPHPDTL 265
                           G +   D                    M+ AS  F ++ +P  +
Sbjct: 167 KSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTII 226

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
             N+M+ GYA+   ++ AL+ FK MP++++VSWN +I+    +     A+ + + M  +G
Sbjct: 227 CRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKG 286

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEAR 384
            +PD  T++S L+  + +  L  G Q+H  V + +    P + +A++ +YA+CG   EA+
Sbjct: 287 VRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAK 346

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F  ++  +N VSW  +IGG   +G  +E++ELF  MR+  +        +++S C + 
Sbjct: 347 RVFSSLR-DRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNT 405

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
             +  G Q   S+  + G    +    SL+ +  + G L++A +LI     E D   W  
Sbjct: 406 MDICLGSQ-LHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNA-ELIFNFMAERDIVSWTG 463

Query: 505 LLGACRVHNNVELAQ 519
           ++ A     N+  A+
Sbjct: 464 MITAYSQVGNIAKAR 478



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 143/303 (47%), Gaps = 38/303 (12%)

Query: 24  RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
           R VV  N +IS Y      G L+ A  +F+ M ERD V+W  +I+ Y++ G + +A   F
Sbjct: 425 RAVVVSNSLISMYAKC---GNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFF 481

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGEL 138
           + M  RNV++WNAM+  ++Q+G   + ++ +  M        D  +   L  G    G  
Sbjct: 482 DDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGAN 541

Query: 139 DEAARVL---VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
               +++   VK G   D         N +I  Y + GR+ EARK FD +          
Sbjct: 542 KLGDQIIGHTVKVGLILD-----TSVVNAVITMYSKCGRISEARKAFDFLS--------- 587

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEE 251
              ++++VSWN+MI  Y++ G    A EIF+ +L +    D  S+  ++SG  H   +EE
Sbjct: 588 ---RKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEE 644

Query: 252 ASNLF--VKMPH---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGC 305
               F  +K  H   P    ++ MV    + G+L  A +    MP K     W ++++ C
Sbjct: 645 GKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSAC 704

Query: 306 ETN 308
           +T+
Sbjct: 705 KTH 707


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 210/710 (29%), Positives = 344/710 (48%), Gaps = 137/710 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY---------------ISSRG---- 41
           M++ Y    +   A  LF  MP  DVVSWN ++SGY               ++ RG    
Sbjct: 76  MLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPD 135

Query: 42  ----------SGFLEEARYLFDIMP-------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                      G LE+      I         E D    + ++  Y K   +E+ALR F+
Sbjct: 136 RTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFH 195

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRM---------PG-----RDSASLSALVS 130
            M  RN VSW A I+G +QN      +E F +M         P      R  A+++ L +
Sbjct: 196 GMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLST 255

Query: 131 GLIQNGELDE----AARV----LVKCGSRCDGGEDLVRAY-----------NTLIVGYGQ 171
               +    +    A RV    +V   ++ D   D  RA+           N ++VG  +
Sbjct: 256 ARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVR 315

Query: 172 RGRVEEARKLF----------DKIPVN-----CDRGEGNVR------------FKRNIVS 204
            G   EA +LF          D + ++     C   +G ++            F  ++  
Sbjct: 316 TGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCV 375

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP---- 260
            N+++  Y K   +V A  +F++M +RD+ SWN +I+        E+      +M     
Sbjct: 376 RNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGM 435

Query: 261 HPDTLTWNAMVSGYAQIGNLE-------------LALDFF-------------------- 287
            PD  T+ +++   A + +LE             L LD F                    
Sbjct: 436 EPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQK 495

Query: 288 --KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
              R+  + LVSWNS+I+G   NK  E A K F +M   G KPD  T++++L   + +  
Sbjct: 496 LHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLAT 555

Query: 346 LHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           + LG QIH Q++ + ++ D  I++ L+ MYA+CG + ++ ++FE+ + L + VSWNAMI 
Sbjct: 556 IELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKL-DFVSWNAMIC 614

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           G A HG   EALE+F+ M+   V+P + TF++VL AC+H GL+++G ++F  M + Y +E
Sbjct: 615 GYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLE 674

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           P++EHFA +VDI+GR    ++A+  I+ MP E D  +W  LL  C++  +VE+A+ AA  
Sbjct: 675 PQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASN 734

Query: 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +++++P++S+ Y+LL N+YA+ G+W D +  R LM+   +KK  G SW++
Sbjct: 735 VLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIE 784



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 157/651 (24%), Positives = 268/651 (41%), Gaps = 104/651 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y +    A AR +FD MP RD VSWN M++ Y  +  +G    A  LF  MP+ D 
Sbjct: 45  LLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAYAHAGDTG---AAASLFGAMPDPDV 101

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVV---------------------------- 92
           V+WN ++SGY + G   +++ L   M  R V                             
Sbjct: 102 VSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAV 161

Query: 93  -----------SWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                      + +A++  + +   + +A+ FF  M  R+S S  A ++G +QN +    
Sbjct: 162 AVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRG 221

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             + V+      G      AY ++         +  AR+L      N        +F  +
Sbjct: 222 LELFVQMQRLGLGVSQ--PAYASVFRSCAAITCLSTARQLHAHAIKN--------KFSAD 271

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
            V   +++  YAKA  +V AR  F  +      + N M+ G +      EA  LF  M  
Sbjct: 272 RVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTR 331

Query: 262 P---------------------------------------DTLTWNAMVSGYAQIGNLEL 282
                                                   D    NA++  Y +   L  
Sbjct: 332 SGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVE 391

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F+ M Q++ VSWN++IA  E N+ YE  I    +M   G +PD  T+ S+L   +G
Sbjct: 392 AYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAG 451

Query: 343 IVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  L  G  +H    K+ +  D  +++ ++ MY +CG I EA+ + + +   + +VSWN+
Sbjct: 452 LQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIG-GQELVSWNS 510

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNE 460
           +I G + +  + EA + F  M    V P + T+ +VL  CA+   +E G+Q H + +  E
Sbjct: 511 IISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQE 570

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
              +  I   ++LVD+  + G + D++ + +    + D   W A++    +H        
Sbjct: 571 MLGDEYIS--STLVDMYAKCGNMPDSLLMFEKAQ-KLDFVSWNAMICGYALHGQ---GFE 624

Query: 521 AAEALMKVEPENSTP----YVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
           A E   +++  N  P    +V +    + VG  DD      LM S    +P
Sbjct: 625 ALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEP 675



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 137/494 (27%), Positives = 228/494 (46%), Gaps = 35/494 (7%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           + A AR L         VS N ++  Y    G+     AR +FD+MP RD V+WNT+++ 
Sbjct: 24  QAAHARMLVSGFMPTTFVS-NCLLQMYARCGGAA---HARGVFDVMPHRDTVSWNTMLTA 79

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG----DVANAIEFFDRMPGRDSASL 125
           YA  G+   A  LF +MP  +VVSWNA++SG+ Q G     V  ++E   R    D  +L
Sbjct: 80  YAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTL 139

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           + L+      G  D A  V +   +   G E  VRA + L+  YG+   +E+A + F   
Sbjct: 140 AVLLKAC--GGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFF--- 194

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMIS 241
                 G G    +RN VSW + I    +        E+F QM    L     ++ ++  
Sbjct: 195 -----HGMG----ERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFR 245

Query: 242 GYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
               +  +  A  L           D +   A+V  YA+  +L  A   F  +P   + +
Sbjct: 246 SCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQA 305

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
            N+M+ G         A++LF  M   G   D  + S + S  + +     G+Q+H +  
Sbjct: 306 CNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAI 365

Query: 358 KTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           K+    DV + NA++ +Y +C A+VEA ++F+EM+  ++ VSWNA+I     +    + +
Sbjct: 366 KSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEME-QRDSVSWNAIIAALEQNECYEDTI 424

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR-QHFKSMVNEYGIEPRIEHFASLVD 475
                M  + + P   T+ SVL ACA    +E G   H K++ +  G++  +   +++VD
Sbjct: 425 AYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVS--STVVD 482

Query: 476 IVGRHGRLEDAMDL 489
           +  + G + +A  L
Sbjct: 483 MYCKCGMITEAQKL 496



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 141/290 (48%), Gaps = 5/290 (1%)

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           TF  N ++  Y        A  +F  MPH DT++WN M++ YA  G+   A   F  MP 
Sbjct: 39  TFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPD 98

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
            ++VSWN++++G      +  ++ L ++M   G  PDR T + +L    G+ DL LG+QI
Sbjct: 99  PDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQI 158

Query: 353 HQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H +  KT +  DV   +AL+ MY +C ++ +A   F  M   +N VSW A I GC  +  
Sbjct: 159 HAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMG-ERNSVSWGAAIAGCVQNEQ 217

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHF 470
            T  LELF  M+   +  +   + SV  +CA    +   RQ H  ++ N++  +  +   
Sbjct: 218 YTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVG-- 275

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
            ++VD+  +   L DA      +P    +A    ++G  R     E  Q+
Sbjct: 276 TAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQL 325



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 35/211 (16%)

Query: 332 TFSSILSMSSGI--VDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFE 388
           TFS +  + +G     L  G   H +M+    +P   ++N L+ MYARCG    AR +F+
Sbjct: 4   TFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFD 63

Query: 389 EM---------KLLK---------------------NVVSWNAMIGGCASHGFATEALEL 418
            M          +L                      +VVSWNA++ G    G   +++ L
Sbjct: 64  VMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGL 123

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
              M    V P   T   +L AC     +  G Q   ++  + G+E  +   ++LVD+ G
Sbjct: 124 SVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQ-IHAVAVKTGLEMDVRAGSALVDMYG 182

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           +   LEDA+    GM  E +   WGA +  C
Sbjct: 183 KCRSLEDALRFFHGMG-ERNSVSWGAAIAGC 212


>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
 gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
          Length = 546

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 157/380 (41%), Positives = 238/380 (62%), Gaps = 4/380 (1%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F+ N    N++I  ++  GD+V AR IF  + ER   SW+ + +GY    ++  A  +F 
Sbjct: 144 FEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFD 203

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           +MP  D ++WN M++GY + G +E A   F   P+K++V+WN+MIAG     +   A+++
Sbjct: 204 EMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEM 263

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD--VPINNALITMYA 375
           F +M+  GE PD  T  S+LS  + + DL +G ++H  +++    D  V + NAL+ MYA
Sbjct: 264 FEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYA 323

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK-VLPTYITF 434
           +CG+I  A  +F++M+  K+V +WN++IGG A HG A E+++LF  M++ K + P  ITF
Sbjct: 324 KCGSIEIALQVFKKMRE-KDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITF 382

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           + V+ AC+HAG VEEGR++FK M   Y IEP + H   +VD++GR G L +A +LI  M 
Sbjct: 383 VGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFELIAKME 442

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANE 554
            EP+  +W  LLGACRVH NVEL ++A E L+K+  + S  YVLL N+YA  G WD A E
Sbjct: 443 IEPNAIIWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLLSNIYASAGEWDGAEE 502

Query: 555 VRLLMKSNNIKKPTGYSWVD 574
           VR LM    ++K  G S ++
Sbjct: 503 VRKLMDDGGVRKEAGRSLIE 522



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 145/268 (54%), Gaps = 14/268 (5%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G L  AR +F  +PER  V+W+ + +GYA+ GE+  A ++F+ MP +++VSWN MI+G++
Sbjct: 162 GDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFDEMPVKDLVSWNVMITGYV 221

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
           +NG++ NA   FD  P +D  + + +++G +  GE  +A  +  +  +  +  +++    
Sbjct: 222 KNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTML- 280

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
            +L+      G ++  RKL      +C   E   R   +++  N+++  YAK G +  A 
Sbjct: 281 -SLLSACADLGDLQVGRKL------HCSISE-MTRGDLSVLLGNALVDMYAKCGSIEIAL 332

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQI 277
           ++F++M E+D  +WN++I G       EE+  LF +M       P+ +T+  ++   +  
Sbjct: 333 QVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVACSHA 392

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGC 305
           GN+E    +FK M ++  +  N +  GC
Sbjct: 393 GNVEEGRRYFKLMRERYDIEPNMIHHGC 420



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 140/322 (43%), Gaps = 66/322 (20%)

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
           G +  A   F ++ + ++  WN+M+ G   +K+    + L+ QM+  G KPD+ TFS +L
Sbjct: 61  GAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLL 120

Query: 338 SMSSGIVDLHLGMQIHQMVTK---------------------------TVIPDVPIN--- 367
              + +     G  +H  V K                           ++  D+P     
Sbjct: 121 KGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVV 180

Query: 368 --NALITMYARCGAIVEARIIFEEMKL-------------LKN----------------- 395
             +AL   YAR G +  AR IF+EM +             +KN                 
Sbjct: 181 SWSALTAGYARRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKD 240

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           VV+WN MI G    G   +ALE+F+ MR+    P  +T +S+LSACA  G ++ GR+   
Sbjct: 241 VVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHC 300

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
           S+      +  +    +LVD+  + G +E A+ + K M  E D   W +++G    H + 
Sbjct: 301 SISEMTRGDLSVLLGNALVDMYAKCGSIEIALQVFKKMR-EKDVTTWNSVIGGLAFHGHA 359

Query: 516 ELA-QVAAE--ALMKVEPENST 534
           E + ++ AE  AL  ++P   T
Sbjct: 360 EESIKLFAEMQALKNIKPNEIT 381


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 202/626 (32%), Positives = 318/626 (50%), Gaps = 70/626 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-----FLE--------- 46
           +I  Y +   ++ A+ LFD +PQ+D V WNVM++GY+ +  SG     FLE         
Sbjct: 99  LIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPN 158

Query: 47  -----------EARYLFDIMP-----------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                       +  + D+             E D    NT+++ Y+K   ++ A +LF+
Sbjct: 159 SVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFD 218

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DS---ASLSALVSGLIQNGE 137
           + P  ++VSWN +ISG++QNG +  A   F  M       DS   AS    V+ L+    
Sbjct: 219 TSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKH 278

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
             E    +++     D     V   + LI  Y +   VE A+K+       C        
Sbjct: 279 CKEIHGYIIRHAVVLD-----VFLKSALIDIYFKCRDVEMAQKIL------CQSSS---- 323

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIF----EQMLERDTFSWNTMISGYIHV----LDM 249
              + V   +MI  Y   G    A E F    ++ ++  + +++++   +  +    L  
Sbjct: 324 --FDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGK 381

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           E   ++            +A++  YA+ G L+LA   F R+ +K+ + WNSMI  C  N 
Sbjct: 382 ELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNG 441

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINN 368
               AI LF QM +EG + D  + S  LS  + +  LH G +IH ++ K  +  D+   +
Sbjct: 442 RPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAES 501

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           +LI MYA+CG +  +R +F+ M+  +N VSWN++I    +HG   E L LF  M    + 
Sbjct: 502 SLIDMYAKCGNLNFSRRVFDRMQ-ERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQ 560

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P ++TF+ ++SAC HAG V+EG +++  M  EYGI  R+EH+A + D+ GR GRL++A +
Sbjct: 561 PDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFE 620

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
            I  MPF PD  VWG LLGAC +H NVELA+VA++ L  ++P NS  YVLL N+ A  G+
Sbjct: 621 TINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGK 680

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVD 574
           W    +VR +MK   ++K  GYSW++
Sbjct: 681 WRKVLKVRSIMKERGVRKVPGYSWIE 706



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 149/640 (23%), Positives = 270/640 (42%), Gaps = 109/640 (17%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGFLEEARYL 51
           YV+   +  A+ LF  +      +WN MI G             Y+   G+G +   +Y 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAG-VSPDKYT 60

Query: 52  FDIMPERDC------------------------VTWNTVISGYAKTGEMEEALRLFNSMP 87
           F  + +  C                           +++I  YA+ G + +A  LF+++P
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNGELDEAAR 143
            ++ V WN M++G+++NGD  NAI+ F  M   +    S + + ++S       LD   +
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 144 ---VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
              + V CG   D         NTL+  Y +   ++ ARKLFD  P            + 
Sbjct: 181 LHGIAVSCGLELDS-----PVANTLLAMYSKCQCLQAARKLFDTSP------------QS 223

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLF 256
           ++VSWN +I  Y + G +  A  +F  M    ++ D+ ++ + +     +L ++    + 
Sbjct: 224 DLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIH 283

Query: 257 -VKMPHP---DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
              + H    D    +A++  Y +  ++E+A     +    + V   +MI+G   N   +
Sbjct: 284 GYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNK 343

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALI 371
            A++ F  +  E  KP   TFSSI    +G+  L+LG ++H  + KT + +   + +A++
Sbjct: 344 EALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAIL 403

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            MYA+CG +  A  +F  +   K+ + WN+MI  C+ +G   EA+ LF+ M         
Sbjct: 404 DMYAKCGRLDLACRVFNRIT-EKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDC 462

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMV------NEYGIEPRIEHFA-------------- 471
           ++    LSACA+   +  G++    M+      + Y     I+ +A              
Sbjct: 463 VSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDR 522

Query: 472 ----------SLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNVELA 518
                     S++   G HG L++ + L   M     +PD   +  ++ AC     V+  
Sbjct: 523 MQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVD-E 581

Query: 519 QVAAEALMKVE---PENSTPYVLLYNMYADVGRWDDANEV 555
            +    LM  E   P     Y  + +M+   GR D+A E 
Sbjct: 582 GIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFET 621


>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
 gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
            Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
            multiple PPR PF|01535 repeats. ESTs gb|AV565358,
            gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
            thaliana]
 gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
          Length = 1322

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 175/511 (34%), Positives = 278/511 (54%), Gaps = 47/511 (9%)

Query: 58   RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
            +DC   N  I+       ++ A+     M   NV  +NA+  GF+       ++E + RM
Sbjct: 803  QDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRM 862

Query: 118  PGRDSASLSALV-SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
              RDS S S+   S L++      A+R           GE L    +    G+G   +++
Sbjct: 863  L-RDSVSPSSYTYSSLVKASSF--ASRF----------GESL--QAHIWKFGFGFHVKIQ 907

Query: 177  EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
                                          ++I  Y+  G +  AR++F++M ERD  +W
Sbjct: 908  -----------------------------TTLIDFYSATGRIREARKVFDEMPERDDIAW 938

Query: 237  NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
             TM+S Y  VLDM+ A++L  +M   +  T N +++GY  +GNLE A   F +MP K+++
Sbjct: 939  TTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDII 998

Query: 297  SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
            SW +MI G   NK Y  AI +F +M  EG  PD  T S+++S  + +  L +G ++H   
Sbjct: 999  SWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYT 1058

Query: 357  TKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
             +   + DV I +AL+ MY++CG++  A ++F  +   KN+  WN++I G A+HGFA EA
Sbjct: 1059 LQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK-KNLFCWNSIIEGLAAHGFAQEA 1117

Query: 416  LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
            L++F  M    V P  +TF+SV +AC HAGLV+EGR+ ++SM+++Y I   +EH+  +V 
Sbjct: 1118 LKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVH 1177

Query: 476  IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
            +  + G + +A++LI  M FEP+  +WGALL  CR+H N+ +A++A   LM +EP NS  
Sbjct: 1178 LFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGY 1237

Query: 536  YVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
            Y LL +MYA+  RW D  E+R  M+   I+K
Sbjct: 1238 YFLLVSMYAEQNRWRDVAEIRGRMRELGIEK 1268



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 155/327 (47%), Gaps = 37/327 (11%)

Query: 1    MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
            +I  Y     + +ARK+FDEMP+RD ++W  M+S Y   R    ++ A  L + M E++ 
Sbjct: 910  LIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAY---RRVLDMDSANSLANQMSEKNE 966

Query: 61   VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
             T N +I+GY   G +E+A  LFN MP ++++SW  MI G+ QN     AI  F +M   
Sbjct: 967  ATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEE 1026

Query: 121  ----DSASLSALVSGLIQNGELD---EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
                D  ++S ++S     G L+   E     ++ G   D     V   + L+  Y + G
Sbjct: 1027 GIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLD-----VYIGSALVDMYSKCG 1081

Query: 174  RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----L 229
             +E A  +F  +P            K+N+  WNS+I   A  G    A ++F +M    +
Sbjct: 1082 SLERALLVFFNLP------------KKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESV 1129

Query: 230  ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN-----AMVSGYAQIGNLELAL 284
            + +  ++ ++ +   H   ++E   ++  M    ++  N      MV  +++ G +  AL
Sbjct: 1130 KPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEAL 1189

Query: 285  DFFKRMP-QKNLVSWNSMIAGCETNKD 310
            +    M  + N V W +++ GC  +K+
Sbjct: 1190 ELIGNMEFEPNAVIWGALLDGCRIHKN 1216


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 181/544 (33%), Positives = 288/544 (52%), Gaps = 63/544 (11%)

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQ 134
           A+ +F ++   N++ WN M  G   N D   A++ +  M       +S S   L+    +
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNT-LIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
           +  L E  ++    G     G DL    NT LI  Y Q GR+E+A K+FD+         
Sbjct: 78  SKALIEGQQIH---GHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSS------- 127

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEAS 253
                 R++VS+ ++I  YA  G + +AR++F+++  +D  SWN MISGY+   + +EA 
Sbjct: 128 -----HRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEAL 182

Query: 254 NLFVKM------PHPDTL--------------------TW-------------NAMVSGY 274
            L+  M      P   T+                    +W             N ++  Y
Sbjct: 183 ELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLY 242

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
           ++ G +E A   F+ + +K+++SWN++I G      Y+ A+ LF +M   GE P+  T  
Sbjct: 243 SKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTML 302

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKT---VIPDVPINNALITMYARCGAIVEARIIFEEMK 391
           S+L   + +  + +G  IH  + K    V     +  +LI MYA+CG I  A+ +F+ M 
Sbjct: 303 SVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSM- 361

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
           L +++ SWNAMI G A HG A  A +LF  MR   + P  ITF+ +LSAC+H+G+++ GR
Sbjct: 362 LTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGR 421

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
             F+SM  +Y I P++EH+  ++D++G  G  ++A ++I+ MP EPD  +W +LL AC++
Sbjct: 422 HIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKM 481

Query: 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           HNNVEL +  A+ L+K+EPEN   YVLL N+YA  GRWD   ++R L+    IKK  G S
Sbjct: 482 HNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCS 541

Query: 572 WVDF 575
            ++ 
Sbjct: 542 SIEI 545



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 180/411 (43%), Gaps = 84/411 (20%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G LE+A  +FD    R  V++  +I+GYA  G +  A +LF+ +  ++VVSWNAMISG+
Sbjct: 113 NGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGY 172

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
           ++  +   A+E +  M              +  N + DE+  V                 
Sbjct: 173 VETCNFKEALELYKDM--------------MKTNVKPDESTMV----------------- 201

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
             T++    Q G +E  R+L   I    D G     F  NI   N +I  Y+K G+V +A
Sbjct: 202 --TVVSACAQSGSIELGRQLHSWIE---DHG-----FGSNIKIVNVLIDLYSKCGEVETA 251

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLT----------- 266
             +F+ + ++D  SWNT+I G+ H+   +EA  LF +M      P+ +T           
Sbjct: 252 CGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHL 311

Query: 267 -------W-------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
                  W                    +++  YA+ G++E A   F  M  ++L SWN+
Sbjct: 312 GAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNA 371

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-- 358
           MI G   +     A  LF +M+  G  PD  TF  +LS  S    L LG  I + +++  
Sbjct: 372 MIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDY 431

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            + P +     +I +   CG   EA+ +   M +  + V W +++  C  H
Sbjct: 432 KITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMH 482



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 166/395 (42%), Gaps = 67/395 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           +I+GY  R  +  ARKLFDE+  +DVVSWN MISGY+ +    F E      D+M     
Sbjct: 137 LITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVET--CNFKEALELYKDMMKTNVK 194

Query: 56  PE--------------------RDCVTW-------------NTVISGYAKTGEMEEALRL 82
           P+                    R   +W             N +I  Y+K GE+E A  L
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGL 254

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGEL 138
           F  +  ++V+SWN +I G         A+  F  M       +  ++ +++      G +
Sbjct: 255 FQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAI 314

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
           D    + V    R  G  +      +LI  Y + G +E A+++FD +             
Sbjct: 315 DIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSM------------L 362

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASN 254
            R++ SWN+MI  +A  G   +A ++F +M    ++ D  ++  ++S   H   ++   +
Sbjct: 363 TRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRH 422

Query: 255 LFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETN 308
           +F  M       P    +  M+      G  + A +  + MP + + V W S++  C+ +
Sbjct: 423 IFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMH 482

Query: 309 KDYE-GAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
            + E G       +++E E P  +   S +  ++G
Sbjct: 483 NNVELGESYAQNLIKIEPENPGSYVLLSNIYATAG 517



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 146/316 (46%), Gaps = 18/316 (5%)

Query: 245 HVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV----SWNS 300
           H   +  A ++F  +  P+ L WN M  G+A   +   AL  +  M    L+    S+  
Sbjct: 11  HFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPF 70

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           ++  C  +K      ++   +   G   D +  +S++SM +    L      H++  ++ 
Sbjct: 71  LLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLE---DAHKVFDRSS 127

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
              V    ALIT YA  G I  AR +F+E+  +K+VVSWNAMI G        EALEL+K
Sbjct: 128 HRHVVSYTALITGYASRGYINNARKLFDEIS-VKDVVSWNAMISGYVETCNFKEALELYK 186

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M    V P   T ++V+SACA +G +E GRQ   S + ++G    I+    L+D+  + 
Sbjct: 187 DMMKTNVKPDESTMVTVVSACAQSGSIELGRQ-LHSWIEDHGFGSNIKIVNVLIDLYSKC 245

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV--ELAQVAAEALMKVEPENSTPYVL 538
           G +E A  L +G+  + D   W  L+G    H N+  E   +  E L   E  N    + 
Sbjct: 246 GEVETACGLFQGLA-KKDVISWNTLIGG-HTHMNLYKEALLLFQEMLRSGESPNDVTMLS 303

Query: 539 LYNMYA-----DVGRW 549
           +    A     D+GRW
Sbjct: 304 VLPACAHLGAIDIGRW 319


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 200/629 (31%), Positives = 325/629 (51%), Gaps = 82/629 (13%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DC 60
           YVK  ++ + R +FD++ +  +  WN+MIS Y    GSG   E+  LF  M E     + 
Sbjct: 195 YVKCGDLKEGRMVFDKLSESKIFLWNLMISEY---SGSGNYGESINLFKQMLELGIKPNS 251

Query: 61  VTWNTVISGYAKTGEMEE-----------------------------------ALRLFNS 85
            T+++++  +A    +EE                                   A +LF+ 
Sbjct: 252 YTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDE 311

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--GRDSASLSALVSGLIQNGELDEA-- 141
           +  R+V+SWN+MISG+++NG     IE F +M   G D   L+ +V+  +    +     
Sbjct: 312 LTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVD-IDLATMVNVFVACANIGTLLL 370

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            +VL     +    +  VR  NTL+  Y + G +  A ++F+++             ++ 
Sbjct: 371 GKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMD------------EKT 418

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMI----------SGYIHVL 247
           +VSW SMI  Y + G    A ++F++M  R    D ++  +++          SG I V 
Sbjct: 419 VVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKI-VH 477

Query: 248 DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
           D    +NL       ++   NA+   YA+ G+++ A D F  M +K+++SWN+MI G   
Sbjct: 478 DYIRENNL-----ETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTK 532

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPI 366
           N     A+ LF +MQ E  KPD  T + IL   + +  L  G +IH    +     D  +
Sbjct: 533 NSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYV 591

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            NA++ MY +CG +V AR +F+ M   K++VSW  MI G   HG+ +EA+  F  MR   
Sbjct: 592 TNAVVDMYVKCGLLVLARSLFD-MIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTG 650

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           + P  ++FIS+L AC+H+GL++EG + F  M  E  IEP +EH+A +VD++ R G L  A
Sbjct: 651 IEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKA 710

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
              IK MP +PD  +WGALL  CR+H++V+LA+  AE + ++EPEN+  YVLL N+YA+ 
Sbjct: 711 HKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEA 770

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
            +W++  ++R  +    +KK  G SW++ 
Sbjct: 771 EKWEEVQKLRKKIGQRGLKKNPGCSWIEI 799



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 127/497 (25%), Positives = 219/497 (44%), Gaps = 74/497 (14%)

Query: 101 FLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC--GSRCDGGEDL 158
            L++G      E F ++     A   AL +    + ELD + +++  C  G   +  E L
Sbjct: 81  LLESGLKVKEYELFSKLSFSSLAYAPALETKSYMDVELDSSRKIVEFCEVGDLKNAMELL 140

Query: 159 VR---------AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
                      AY +++    +R  + + R++   I  +    +G +  K        ++
Sbjct: 141 CSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVK--------LV 192

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTL 265
             Y K GD+   R +F+++ E   F WN MIS Y    +  E+ NLF +M      P++ 
Sbjct: 193 FMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSY 252

Query: 266 TWNAMVSGYAQIGNLE-----------------------------------LALDFFKRM 290
           T+++++  +A +  +E                                    A   F  +
Sbjct: 253 TFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDEL 312

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
             ++++SWNSMI+G   N   +  I++FI+M V G   D  T  ++    + I  L LG 
Sbjct: 313 TDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGK 372

Query: 351 QIHQMVTKTVIPD--VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
            +H    K    D  V  NN L+ MY++CG +  A  +FE M   K VVSW +MI G   
Sbjct: 373 VLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMD-EKTVVSWTSMITGYVR 431

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
            G +  A++LF  M+S  V+P      S+L+ACA  G ++ G+     +V++Y  E  +E
Sbjct: 432 EGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGK-----IVHDYIRENNLE 486

Query: 469 --HFAS--LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV--ELAQVAA 522
              F S  L D+  + G ++DA D+   M  + D   W  ++G     N++  E   + A
Sbjct: 487 TNSFVSNALTDMYAKCGSMKDAHDVFSHMK-KKDVISWNTMIGG-YTKNSLPNEALTLFA 544

Query: 523 EALMKVEPENSTPYVLL 539
           E   + +P+ +T   +L
Sbjct: 545 EMQRESKPDGTTVACIL 561



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 147/331 (44%), Gaps = 37/331 (11%)

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +V  Y + G+L+     F ++ +  +  WN MI+    + +Y  +I LF QM   G KP+
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPN 250

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV-PINNALITMYARCGAIVEARIIFE 388
            +TFSSIL   + +  +  G Q+H ++ K        + N+LI+ Y     +  A+ +F+
Sbjct: 251 SYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFD 310

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
           E+   ++V+SWN+MI G   +G     +E+F  M  F V     T ++V  ACA+ G + 
Sbjct: 311 ELT-DRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLL 369

Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM--------------------- 487
            G+      +    ++  +    +L+D+  + G L  A+                     
Sbjct: 370 LGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGY 429

Query: 488 -------------DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE-NS 533
                        D +K     PD     ++L AC ++ N++  ++  + + +   E NS
Sbjct: 430 VREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNS 489

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
                L +MYA  G   DA++V   MK  ++
Sbjct: 490 FVSNALTDMYAKCGSMKDAHDVFSHMKKKDV 520


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 194/623 (31%), Positives = 334/623 (53%), Gaps = 64/623 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR-DVVSWNVMISGYISS-------------------- 39
           ++  Y K  ++  AR+LFD MP++ DVVSWN MIS Y S+                    
Sbjct: 257 IVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAP 316

Query: 40  ------------RGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEALRLF 83
                         S F+++  ++   + +     +    N +I+ YA+ G+M EA  +F
Sbjct: 317 NTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIF 376

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
            +M   + +SWN+M+SGF+QNG    A++F+  M  RD+     LV+ +        +  
Sbjct: 377 YNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEM--RDAGQKPDLVAVISIIAASARSGN 434

Query: 144 VL----VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
            L    +   +  +G +  ++  N+L+  Y +   ++    +FDK+P             
Sbjct: 435 TLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP------------D 482

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMI---SGYIHVLDMEEA 252
           +++VSW ++I  +A+ G    A E+F ++    ++ D    ++++   SG   +  ++E 
Sbjct: 483 KDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEI 542

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
            +  ++    D +  N +V  Y + GN++ A   F+ +  K++VSW SMI+    N    
Sbjct: 543 HSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLAN 602

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNALI 371
            A++LF  M+  G +PD  +  SILS ++ +  L  G +IH  ++ K  + +  + + L+
Sbjct: 603 EALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLV 662

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            MYARCG + ++R +F  ++  K++V W +MI     HG    A++LF+ M    + P +
Sbjct: 663 DMYARCGTLEKSRNVFNFIRN-KDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDH 721

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           I F++VL AC+H+GL+ EGR+  +SM  EY +EP  EH+  LVD++GR   LE+A   +K
Sbjct: 722 IAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVK 781

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
           GM  EP   VW ALLGAC++H+N EL ++AA+ L++++PEN   YVL+ N+YA   RW D
Sbjct: 782 GMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKD 841

Query: 552 ANEVRLLMKSNNIKKPTGYSWVD 574
             EVR+ MK++ +KK  G SW++
Sbjct: 842 VEEVRMRMKASGLKKNPGCSWIE 864



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 131/494 (26%), Positives = 242/494 (48%), Gaps = 64/494 (12%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASL 125
           Y K G + +A +LF+ MP + + +WNAMI  ++ NG+   ++E +  M       D+ + 
Sbjct: 160 YGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTF 219

Query: 126 SALVS--GLIQNGELDEAARVLVKCGSRC------DGGEDLVRAYNTLIVGYGQRGRVEE 177
             ++   GL+++           +CG+        +G   +V   N+++  Y +   +  
Sbjct: 220 PCILKACGLLKDR----------RCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNG 269

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           AR+LFD++P            K ++VSWNSMI  Y+  G  + A  +F +M ++ + + N
Sbjct: 270 ARQLFDRMPE-----------KEDVVSWNSMISAYSSNGQSIEALRLFGEM-QKASLAPN 317

Query: 238 TMISGYIHVLDMEEASNLFVKMP------------HPDTLTWNAMVSGYAQIGNLELALD 285
           T    ++  L   E S+ F+K              + +    NA+++ YA+ G +  A +
Sbjct: 318 TYT--FVAALQACEDSS-FIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAAN 374

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F  M   + +SWNSM++G   N  Y  A++ + +M+  G+KPD     SI++ S+   +
Sbjct: 375 IFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGN 434

Query: 346 LHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
              GMQIH    K  +  D+ + N+L+ MYA+  ++     IF++M   K+VVSW  +I 
Sbjct: 435 TLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTTIIA 493

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           G A +G  + ALELF+ ++   +    +   S+L AC+   L+   ++     ++ Y I 
Sbjct: 494 GHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKE-----IHSYIIR 548

Query: 465 PRIEHFA---SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
             +        +VD+ G  G ++ A  + + + F+ D   W +++ +C VHN +    + 
Sbjct: 549 KGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-SCYVHNGLANEALE 606

Query: 522 AEALMK---VEPEN 532
              LMK   VEP++
Sbjct: 607 LFHLMKETGVEPDS 620



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 142/606 (23%), Positives = 266/606 (43%), Gaps = 133/606 (21%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISS-RGSGFLEEARYL------------------ 51
           +  A KLFD MP + + +WN MI  Y+++    G LE  R +                  
Sbjct: 166 LVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKA 225

Query: 52  FDIMPERDC-----------------VTWNTVISGYAKTGEMEEALRLFNSMPAR-NVVS 93
             ++ +R C                    N+++  Y K  ++  A +LF+ MP + +VVS
Sbjct: 226 CGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVS 285

Query: 94  WNAMISGFLQNGDVANAIEFFDRMPG-----------------RDSASL----------- 125
           WN+MIS +  NG    A+  F  M                    DS+ +           
Sbjct: 286 WNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVL 345

Query: 126 -----------SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
                      +AL++   + G++ EAA +        D  + +  ++N+++ G+ Q G 
Sbjct: 346 KSSYYINVFVANALIAMYARFGKMGEAANIFYN----MDDWDTI--SWNSMLSGFVQNGL 399

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI----FEQMLE 230
             EA + + ++    D G+     K ++V+  S+I   A++G+ ++  +I     +  L+
Sbjct: 400 YHEALQFYHEMR---DAGQ-----KPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLD 451

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRM 290
            D    N+++  Y     M+    +F KMP  D ++W  +++G+AQ              
Sbjct: 452 SDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQ-------------- 497

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
                            N  +  A++LF ++Q+EG   D    SSIL   SG+  +    
Sbjct: 498 -----------------NGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVK 540

Query: 351 QIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +IH  + +  + D+ + N ++ +Y  CG +  A  +FE ++  K+VVSW +MI     +G
Sbjct: 541 EIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIE-FKDVVSWTSMISCYVHNG 599

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE-YGIEPRIEH 469
            A EALELF  M+   V P  I+ +S+LSA A    +++G++    ++ + + +E  +  
Sbjct: 600 LANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLA- 658

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
            ++LVD+  R G LE + ++   +    D  +W +++ A  +H      + A +   ++E
Sbjct: 659 -STLVDMYARCGTLEKSRNVFNFIR-NKDLVLWTSMINAYGMHG---CGRAAIDLFRRME 713

Query: 530 PENSTP 535
            E+  P
Sbjct: 714 DESIAP 719



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 172/364 (47%), Gaps = 45/364 (12%)

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           L+  YG+ G + +A KLFD +P             + I +WN+MI  Y   G+ + + E+
Sbjct: 156 LVFMYGKCGCLVDAEKLFDGMP------------HKTIFTWNAMIGAYVTNGEPLGSLEL 203

Query: 225 FEQM------LERDTFSWNTMISGY---------IHVLDMEEA--SNLFVKMPHPDTLTW 267
           + +M      L+  TF       G          +H L ++E   S +FV          
Sbjct: 204 YREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVA--------- 254

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
           N++V  Y +  +L  A   F RMP+K ++VSWNSMI+   +N     A++LF +MQ    
Sbjct: 255 NSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASL 314

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARI 385
            P+ +TF + L        +  GM IH  V K +   +V + NALI MYAR G + EA  
Sbjct: 315 APNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAAN 374

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           IF  M    + +SWN+M+ G   +G   EAL+ +  MR     P  +  IS+++A A +G
Sbjct: 375 IFYNMDDW-DTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSG 433

Query: 446 LVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
               G Q H  +M N  G++  ++   SLVD+  +   ++    +   MP + D   W  
Sbjct: 434 NTLNGMQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTT 490

Query: 505 LLGA 508
           ++  
Sbjct: 491 IIAG 494



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 147/308 (47%), Gaps = 17/308 (5%)

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV--KMPHPDTLTWNAM 270
            K G V  A +    +    + S  ++   Y  VL++  +       +  H   +T NA+
Sbjct: 87  CKRGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNAL 146

Query: 271 VSG----------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
            +           Y + G L  A   F  MP K + +WN+MI    TN +  G+++L+ +
Sbjct: 147 FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYRE 206

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGA 379
           M+V G   D  TF  IL     + D   G ++H +  K   +  V + N+++ MY +C  
Sbjct: 207 MRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCND 266

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           +  AR +F+ M   ++VVSWN+MI   +S+G + EAL LF  M+   + P   TF++ L 
Sbjct: 267 LNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQ 326

Query: 440 ACAHAGLVEEGR-QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           AC  +  +++G   H   + + Y I   + +  +L+ +  R G++ +A ++   M  + D
Sbjct: 327 ACEDSSFIKQGMFIHATVLKSSYYINVFVAN--ALIAMYARFGKMGEAANIFYNMD-DWD 383

Query: 499 KAVWGALL 506
              W ++L
Sbjct: 384 TISWNSML 391


>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
          Length = 841

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 187/548 (34%), Positives = 295/548 (53%), Gaps = 81/548 (14%)

Query: 48  ARYLFDIMPER---DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           A+Y+  ++      D  +W   I    + G+ +EA  L+  M       W    + F   
Sbjct: 51  AQYVHSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQ-----RWGLWPTTFA-- 103

Query: 105 GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT 164
             +++A++   R+  R        + GL  +G++ +             GG D +     
Sbjct: 104 --LSSALKACARIAYR--------MGGLSIHGQVQKFG---------FSGGGDGIYVETA 144

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           L+  Y + G +E ARK+FD++             +RN+VSWNSM+  Y K+GD+V A+ +
Sbjct: 145 LVDFYCKLGDMEIARKMFDEMA------------ERNVVSWNSMLAGYLKSGDLVVAQRV 192

Query: 225 FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
           F+++ ++D  SWN+MISGY    DME+A +LF +MP  +  +WNAM+SGY + G+++ A 
Sbjct: 193 FDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSAR 252

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE------------------ 326
            FF  MPQ N VSW +MI+G     D + A +LF Q  V G+                  
Sbjct: 253 SFFDAMPQXNNVSWMTMISGYSKCGDVDSACELFDQ--VGGKDLLLFNAMIACYAQNSRP 310

Query: 327 -----------------KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINN 368
                            +PD  T +S++S  S + DL  G  I   + +  I  D  +  
Sbjct: 311 KEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLAT 370

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           AL+ +YA+CG+I +A  +F  ++  K++V++ AMI GC  +G A +A++LF  M   ++ 
Sbjct: 371 ALLDLYAKCGSIDKAYELFHGLRK-KDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 429

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P  ITFI +L+A  HAGLVEEG + F SM  +Y + P ++H+  +VD++GR GRL++A++
Sbjct: 430 PNLITFIGLLTAYNHAGLVEEGYRCFTSM-KKYNLVPSVDHYGIMVDLLGRAGRLQEALE 488

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           LIK MP +P   VWGALL ACR+HNNVE  ++AA+   ++EP+ +    LL N+YA   R
Sbjct: 489 LIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYXSLLSNIYASGER 548

Query: 549 WDDANEVR 556
           WDD   +R
Sbjct: 549 WDDVKRLR 556



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 138/446 (30%), Positives = 233/446 (52%), Gaps = 45/446 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K  +M  ARK+FDEM +R+VVSWN M++GY+ S   G L  A+ +FD +P++D 
Sbjct: 145 LVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKS---GDLVVAQRVFDEIPQKDV 201

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++WN++ISGYA+ G+ME+AL LF  MP RN  SWNAMISG+++ GD+ +A  FFD MP  
Sbjct: 202 ISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQX 261

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           ++ S   ++SG  + G++D A  +  +      GG+DL+  +N +I  Y Q  R +EA K
Sbjct: 262 NNVSWMTMISGYSKCGDVDSACELFDQV-----GGKDLL-LFNAMIACYAQNSRPKEALK 315

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           LF+ + +N D     V  + + ++  S+I   ++ GD+                 +   I
Sbjct: 316 LFNNM-LNPD-----VNVQPDEMTLASVISACSQLGDL----------------RFGPWI 353

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
             Y+  L +E   +L             A++  YA+ G+++ A + F  + +K+LV++ +
Sbjct: 354 ESYMRRLGIEMDGHLA-----------TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTA 402

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-T 359
           MI GC  N     AIKLF +M      P+  TF  +L+  +    +  G +    + K  
Sbjct: 403 MILGCGINGKAIDAIKLFDEMVDAQIFPNLITFIGLLTAYNHAGLVEEGYRCFTSMKKYN 462

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
           ++P V     ++ +  R G + EA  + + M +  +   W A++  C  H    E  E+ 
Sbjct: 463 LVPSVDHYGIMVDLLGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHN-NVEFGEI- 520

Query: 420 KSMRSFKVLPTYITFISVLSACAHAG 445
            +   F++ P    + S+LS    +G
Sbjct: 521 AAQHCFELEPDTTGYXSLLSNIYASG 546


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 216/660 (32%), Positives = 326/660 (49%), Gaps = 131/660 (19%)

Query: 1   MISGYVKRREMAKARKLFDEM-PQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE-- 57
           +IS Y K  +  KA  +F  M   RD++SW+ M+S + ++   GF   A   F  M E  
Sbjct: 107 LISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCF-ANNNMGF--RALLTFVDMIENG 163

Query: 58  ------------RDCVTWN-----------TVISGYAKT----------------GEMEE 78
                       R C T              + +GY ++                G++  
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGEL 138
           A ++F  MP RN V+W  MI+  +Q G    AI+ F  M           +SG+I     
Sbjct: 224 AFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVI----- 278

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
                      S C   E L+          GQ+   +  R       +  DR  G    
Sbjct: 279 -----------SACANMELLL---------LGQQLHSQAIRH-----GLTLDRCVGCC-- 311

Query: 199 KRNIVSWNSMIMCYAKA---GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM-EEASN 254
                    +I  YAK    G + +AR+IF+Q+L+ + FSW  MI+GY+      EEA +
Sbjct: 312 ---------LINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALD 362

Query: 255 LFVKM--PH--PDTLTW-----------------------------------NAMVSGYA 275
           LF  M   H  P+  T+                                   N+++S YA
Sbjct: 363 LFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYA 422

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           + G ++ A   F  + +KNL+S+N++I     N + E A++LF +++ +G      TF+S
Sbjct: 423 RSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFAS 482

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +LS ++ I  +  G QIH  V K+ +  +  + NALI+MY+RCG I  A  +FE+M+  +
Sbjct: 483 LLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMED-R 541

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           NV+SW ++I G A HGFAT+ALELF  M    V P  +T+I+VLSAC+H GLV EG +HF
Sbjct: 542 NVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHF 601

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           KSM  E+G+ PR+EH+A +VDI+GR G L +A+  I  MP++ D  VW   LGACRVH N
Sbjct: 602 KSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGN 661

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +EL + AA+ +++ EP +   Y+LL N+YA + +WD+ + +R  MK   + K  G SWV+
Sbjct: 662 LELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVE 721



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 121/411 (29%), Positives = 185/411 (45%), Gaps = 48/411 (11%)

Query: 102 LQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGED 157
           + NG +  AI   + M  +    D  + S  +   I+    D    V  K  ++ D   D
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKL-TQSDLQLD 100

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
            V   N+LI  Y + G+ E+A  +F        R  G+    R+++SW++M+ C+A    
Sbjct: 101 SV-TLNSLISLYSKCGQWEKATSIF--------RLMGS---SRDLISWSAMVSCFANNNM 148

Query: 218 VVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQI 277
              A   F  M+E   +      +         E    FV +   D++    + +GY Q 
Sbjct: 149 GFRALLTFVDMIENGYYPNEYCFAAATRACSTAE----FVSV--GDSIFGFVIKTGYLQS 202

Query: 278 ----------------GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG-AIKLFIQ 320
                           G+L  A   F++MP++N V+W  MI        Y G AI LF+ 
Sbjct: 203 DVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRL-MQFGYAGEAIDLFLD 261

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARC-- 377
           M   G +PDR T S ++S  + +  L LG Q+H Q +   +  D  +   LI MYA+C  
Sbjct: 262 MIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSV 321

Query: 378 -GAIVEARIIFEEMKLLKNVVSWNAMIGGCASH-GFATEALELFKSMRSFKVLPTYITFI 435
            G++  AR IF+++ L  NV SW AMI G     G+  EAL+LF+ M    V+P + TF 
Sbjct: 322 DGSMCAARKIFDQI-LDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFS 380

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           S L ACA+   +  G Q F   V + G         SL+ +  R GR++DA
Sbjct: 381 STLKACANLAALRIGEQVFTHAV-KLGFSSVNCVANSLISMYARSGRIDDA 430



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 136/518 (26%), Positives = 227/518 (43%), Gaps = 68/518 (13%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSM-PARNVVSWNAMISGF-------------- 101
           + D VT N++IS Y+K G+ E+A  +F  M  +R+++SW+AM+S F              
Sbjct: 98  QLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFV 157

Query: 102 --LQNGDVANAIEFFDRMPGRDSASL----SALVSGLIQNGELDEAARVLVKCGSRCDGG 155
             ++NG   N   F        +A       ++   +I+ G L   + V V CG      
Sbjct: 158 DMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQ--SDVCVGCG------ 209

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
                  +  + G   RG +  A K+F+K+P            +RN V+W  MI    + 
Sbjct: 210 -----LIDMFVKG---RGDLVSAFKVFEKMP------------ERNAVTWTLMITRLMQF 249

Query: 216 GDVVSAREIFEQML----ERDTFSWNTMISGY----IHVLDMEEASNLFVKMPHPDTLTW 267
           G    A ++F  M+    E D F+ + +IS      + +L  +  S         D    
Sbjct: 250 GYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVG 309

Query: 268 NAMVSGYAQI---GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY-EGAIKLFIQMQV 323
             +++ YA+    G++  A   F ++   N+ SW +MI G      Y E A+ LF  M +
Sbjct: 310 CCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMIL 369

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVE 382
               P+  TFSS L   + +  L +G Q+     K     V  + N+LI+MYAR G I +
Sbjct: 370 THVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDD 429

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           AR  F+ +   KN++S+N +I   A +  + EALELF  +    +  +  TF S+LS  A
Sbjct: 430 ARKAFDIL-FEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAA 488

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
             G + +G Q   + V + G++       +L+ +  R G +E A  + + M  + +   W
Sbjct: 489 SIGTIGKGEQ-IHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDME-DRNVISW 546

Query: 503 GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
            +++     H     A  A E   K+  E   P  + Y
Sbjct: 547 TSIITGFAKHG---FATQALELFHKMLEEGVRPNEVTY 581



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 3/201 (1%)

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPI 366
           N     AI     M  +G  PD  T+S  L          +G  +H+ +T++ +  D   
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            N+LI++Y++CG   +A  IF  M   ++++SW+AM+   A++     AL  F  M    
Sbjct: 104 LNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI-VGRHGRLED 485
             P    F +   AC+ A  V  G   F  ++    ++  +     L+D+ V   G L  
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 486 AMDLIKGMPFEPDKAVWGALL 506
           A  + + MP E +   W  ++
Sbjct: 224 AFKVFEKMP-ERNAVTWTLMI 243


>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 606

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 189/569 (33%), Positives = 293/569 (51%), Gaps = 62/569 (10%)

Query: 18  FDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKT 73
           F      D   WN +I  +   +      +A  LF +M E     D  + + V+   ++ 
Sbjct: 71  FSPGEMEDPFLWNAVIKSHSHGKDP---RQALLLFCLMLENGVSVDKFSLSLVLKACSRL 127

Query: 74  GEMEEALRLFNSMPARNVVS----WNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           G ++  +++   +    + S     N +I  +L+ G +  A + FDRMP RDS S     
Sbjct: 128 GFVKGGMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVS----- 182

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
                                           YN++I GY + G +E AR+LFD +P   
Sbjct: 183 --------------------------------YNSMINGYVKCGLIESARELFDLMP--- 207

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDTFSWNTMISGYIHVLD 248
                  R  +N++SWNSMI  YA+  + V+ A ++F +M E+D  SWN+MI GY+    
Sbjct: 208 -------REMKNLISWNSMISGYAQTSEGVNIASKLFAEMPEKDLISWNSMIDGYVKHGR 260

Query: 249 MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           +E+A  LF  MP  D +T   M+ GYA++G +  A   F +MP +++V++NSM+AG   N
Sbjct: 261 IEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQN 320

Query: 309 KDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPI 366
           K +  A+++F  M+ E    PD  T   ILS  + +  L     +H  +V K       +
Sbjct: 321 KCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKL 380

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
             ALI MY++CG+I  A ++FE ++  K++  WNAMIGG A HG    A  +   +    
Sbjct: 381 GVALIDMYSKCGSIQHAMLVFEGIEN-KSIDHWNAMIGGLAVHGLGESAFNMLLQIERLS 439

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           ++P  ITF+ VL+AC+H+GLV+EG   F+ M  ++ IEPR++H+  +VDI+ R G +E A
Sbjct: 440 IIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELA 499

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
            +LI+ MP EP+  +W   L AC  H   E  ++ A+ L+     N + YVLL NMYA  
Sbjct: 500 KNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASF 559

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           G W D   VR +MK   I+K  G SW++ 
Sbjct: 560 GMWKDVRRVRTMMKERKIEKIPGCSWIEL 588



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 169/331 (51%), Gaps = 39/331 (11%)

Query: 1   MISGYVKRREMAK-ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           MISGY +  E    A KLF EMP++D++SWN MI GY+     G +E+A+ LFD+MP RD
Sbjct: 219 MISGYAQTSEGVNIASKLFAEMPEKDLISWNSMIDGYVKH---GRIEDAKGLFDVMPRRD 275

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            VT  T+I GYAK G + +A  LF+ MP R+VV++N+M++G++QN     A+E F+ M  
Sbjct: 276 VVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEK 335

Query: 120 R-----DSASLSALVSGLIQNGELDEAARVLVKCGSR--CDGGEDLVRAYNTLIVGYGQR 172
                 D  +L  ++S + Q G L +A  + +    +    GG+  V     LI  Y + 
Sbjct: 336 ESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGV----ALIDMYSKC 391

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER- 231
           G ++ A  +F+ I              ++I  WN+MI   A  G   SA  +  Q +ER 
Sbjct: 392 GSIQHAMLVFEGIE------------NKSIDHWNAMIGGLAVHGLGESAFNMLLQ-IERL 438

Query: 232 ----DTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLEL 282
               D  ++  +++   H   ++E    F  M       P    +  MV   ++ G++EL
Sbjct: 439 SIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIEL 498

Query: 283 ALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
           A +  + MP + N V W + +  C  +K++E
Sbjct: 499 AKNLIEEMPIEPNDVIWRTFLTACSHHKEFE 529


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 187/564 (33%), Positives = 302/564 (53%), Gaps = 47/564 (8%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEAL------------------RLFN 84
           G L E R +FD +       WN +++GYAK G   E+L                  +LF+
Sbjct: 150 GDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFD 209

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDE 140
            +  R+V+SWN+MISG++ NG     ++ F++M       D A++ ++V+G    G L  
Sbjct: 210 ELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGML-L 268

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             R L     +   G++L    N L+  Y + G +  A ++F+ +      GE      R
Sbjct: 269 LGRALHGYAIKASFGKELT-LNNCLLDMYSKSGNLNSAIQVFETM------GE------R 315

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNL- 255
           ++VSW SMI  YA+ G    +  +F +M    +  D F+  T++        +E   ++ 
Sbjct: 316 SVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVH 375

Query: 256 -FVK--MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
            ++K      D    NA++  YA+ G++  A   F  M  K++VSWN+MI G   N    
Sbjct: 376 NYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPN 435

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALI 371
            A+ LF++MQ    KP+  T + IL   + +  L  G +IH  + +     D  + NAL+
Sbjct: 436 EALNLFVEMQYN-SKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALV 494

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            MY +CGA+  AR++F+ M   K++VSW  MI G   HG+ +EA+  F  MR+  + P  
Sbjct: 495 DMYLKCGALGLARLLFD-MIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDE 553

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           ++FIS+L AC+H+GL++EG   F  M N   IEP+ EH+A +VD++ R G L  A   IK
Sbjct: 554 VSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIK 613

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
            MP EPD  +WGALL  CR++++V+LA+  AE + ++EPEN+  YVLL N+YA+  +W++
Sbjct: 614 MMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEE 673

Query: 552 ANEVRLLMKSNNIKKPTGYSWVDF 575
             ++R  +    ++K  G SW++ 
Sbjct: 674 VKKLRERIGRRGLRKNPGCSWIEI 697



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 119/496 (23%), Positives = 207/496 (41%), Gaps = 104/496 (20%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGY---------------ISSRGSGFLEEAR 49
           YV   ++ + R++FD++    V  WN++++GY               +   G   +E AR
Sbjct: 146 YVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESAR 205

Query: 50  YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP---------------------- 87
            LFD + +RD ++WN++ISGY   G  E+ L LF  M                       
Sbjct: 206 KLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTG 265

Query: 88  -----------------ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
                             + +   N ++  + ++G++ +AI+ F+ M  R   S +++++
Sbjct: 266 MLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIA 325

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           G  + G  D + R+  +     +G    +    T++      G +E  + + + I  N  
Sbjct: 326 GYAREGLSDMSVRLFHEMEK--EGISPDIFTITTILHACACTGLLENGKDVHNYIKEN-- 381

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDME 250
                 + + ++   N+++  YAK G +  A  +F +M  +D  SWNTMI GY       
Sbjct: 382 ------KMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPN 435

Query: 251 EASNLFVKMPH---PDTLTW-----------------------------------NAMVS 272
           EA NLFV+M +   P+++T                                    NA+V 
Sbjct: 436 EALNLFVEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVD 495

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
            Y + G L LA   F  +P+K+LVSW  MIAG   +     AI  F +M+  G +PD  +
Sbjct: 496 MYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVS 555

Query: 333 FSSIL--SMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM 390
           F SIL     SG++D   G          + P       ++ + AR G + +A    + M
Sbjct: 556 FISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMM 615

Query: 391 KLLKNVVSWNAMIGGC 406
            +  +   W A++ GC
Sbjct: 616 PIEPDATIWGALLCGC 631



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 171/373 (45%), Gaps = 36/373 (9%)

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           +  YN  I  + + G +  A +L ++ P          +    + ++ S++   A    +
Sbjct: 68  ITDYNIEICRFCELGNLRRAMELINQSP----------KPDLELRTYCSVLQLCADLKSI 117

Query: 219 VSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
              R I   +    +E D    + ++  Y+   D+ E   +F K+ +     WN +++GY
Sbjct: 118 QDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGY 177

Query: 275 AQIGNLELALDFFKRMPQ------------------KNLVSWNSMIAGCETNKDYEGAIK 316
           A+IGN   +L  FKRM +                  ++++SWNSMI+G  +N   E  + 
Sbjct: 178 AKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLD 237

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYA 375
           LF QM + G   D  T  S+++  S    L LG  +H    K     ++ +NN L+ MY+
Sbjct: 238 LFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYS 297

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           + G +  A  +FE M   ++VVSW +MI G A  G +  ++ LF  M    + P   T  
Sbjct: 298 KSGNLNSAIQVFETMG-ERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTIT 356

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           ++L ACA  GL+E G+    + + E  ++  +    +L+D+  + G + DA  +   M  
Sbjct: 357 TILHACACTGLLENGKD-VHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQV 415

Query: 496 EPDKAVWGALLGA 508
           + D   W  ++G 
Sbjct: 416 K-DIVSWNTMIGG 427



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 152/367 (41%), Gaps = 65/367 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY-------ISSR------------- 40
           ++  Y K   +  A ++F+ M +R VVSW  MI+GY       +S R             
Sbjct: 292 LLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPD 351

Query: 41  ------------GSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEALRLFN 84
                        +G LE  + + + + E     D    N ++  YAK G M +A  +F+
Sbjct: 352 IFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFS 411

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRM---PGRDSASLSALVSGLIQNGELDEA 141
            M  +++VSWN MI G+ +N     A+  F  M      +S +++ ++        L+  
Sbjct: 412 EMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKPNSITMACILPACASLAALERG 471

Query: 142 ARVLVKCGSRCDGGEDLVR-AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +    G     G  L R   N L+  Y + G +  AR LFD IP            ++
Sbjct: 472 QEIH---GHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIP------------EK 516

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLF 256
           ++VSW  MI  Y   G    A   F +M    +E D  S+ +++    H   ++E    F
Sbjct: 517 DLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFF 576

Query: 257 VKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKD 310
             M +     P +  +  +V   A+ GNL  A  F K MP + +   W +++ GC    D
Sbjct: 577 NMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHD 636

Query: 311 YEGAIKL 317
            + A K+
Sbjct: 637 VKLAEKV 643


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 180/597 (30%), Positives = 320/597 (53%), Gaps = 48/597 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y K   +A+AR++FDEMP  ++ + N ++S    SR    + +   LF  MPERD 
Sbjct: 54  LLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSR---LVPDMERLFASMPERDA 110

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM-------PARNVVSWNAMISGFLQNGDVANAIEF 113
           V++N +I+G++ TG    +++L+ ++       P R  +S   M++  L +  + +++  
Sbjct: 111 VSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHC 170

Query: 114 FDRMPGRDSASL--SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
                G  + +   S LV    + G + +A RV  +  ++       V  YNTLI G  +
Sbjct: 171 QVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAK------TVVMYNTLITGLLR 224

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
              +E+A+ LF             +   R+ ++W +M+    + G  + A ++F +M   
Sbjct: 225 CKMIEDAKGLF------------QLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE 272

Query: 232 ----DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW--------NAMVSGYAQIGN 279
               D +++ ++++    +   EE   +   +    T TW        +A+V  Y++  +
Sbjct: 273 GVGIDQYTFGSILTACGALAASEEGKQIHAYI----TRTWYEDNVFVGSALVDMYSKCRS 328

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           + LA   F+RM  +N++SW +MI G   N   E A++ F +MQ++G KPD  T  S++S 
Sbjct: 329 IRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISS 388

Query: 340 SSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            + +  L  G Q H + +   ++  + ++NAL+T+Y +CG+I +A  +F+EM    + VS
Sbjct: 389 CANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMS-FHDQVS 447

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           W A++ G A  G A E ++LF+ M    + P  +TFI VLSAC+ AGLVE+G  +F SM 
Sbjct: 448 WTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQ 507

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            ++ I P  +H+  ++D+  R GR ++A + IK MP  PD   W  LL +CR+  N+E+ 
Sbjct: 508 KDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIG 567

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           + AAE L++ +P+N   YVLL +M+A  G+W +   +R  M+   +KK  G SW+ +
Sbjct: 568 KWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKY 624



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 130/445 (29%), Positives = 205/445 (46%), Gaps = 46/445 (10%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +++ YAK+G +  A R+F+ MP  N+ + NA++S    +  V +    F  MP RD+ 
Sbjct: 52  NHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAV 111

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S +AL++G    G    + ++      R    E+ VR     +            R L  
Sbjct: 112 SYNALITGFSSTGSPARSVQLY-----RALLREESVRPTRITLSAMIMVASALSDRALGH 166

Query: 184 KIPVNCDR-GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
            +     R G G   F       + ++  YAK G +  AR +F++M  +    +NT+I+G
Sbjct: 167 SVHCQVLRLGFGAYAF-----VGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITG 221

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
            +    +E+A  LF  M   D++TW  MV+G  Q G    ALD F+R             
Sbjct: 222 LLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRR------------- 268

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP 362
                             M+ EG   D++TF SIL+    +     G QIH  +T+T   
Sbjct: 269 ------------------MRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYE 310

Query: 363 D-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
           D V + +AL+ MY++C +I  A  +F  M   +N++SW AMI G   +  + EA+  F  
Sbjct: 311 DNVFVGSALVDMYSKCRSIRLAEAVFRRMT-CRNIISWTAMIVGYGQNACSEEAVRAFSE 369

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M+   + P   T  SV+S+CA+   +EEG Q F  +    G+   I    +LV + G+ G
Sbjct: 370 MQMDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCG 428

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALL 506
            +EDA  L   M F  D+  W AL+
Sbjct: 429 SIEDAHRLFDEMSFH-DQVSWTALV 452



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 32/252 (12%)

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           TF  N +++ Y     +  A  +F +MP P+  T NA++S  A    +      F  MP+
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPE 107

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLF-IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           ++ VS+N++I G  +      +++L+   ++ E  +P R T S+++ ++S + D  LG  
Sbjct: 108 RDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHS 167

Query: 352 IHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMK-------------LL---- 393
           +H  V +        + + L+ MYA+ G I +AR +F+EM+             LL    
Sbjct: 168 VHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKM 227

Query: 394 -------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
                        ++ ++W  M+ G   +G   EAL++F+ MR+  V     TF S+L+A
Sbjct: 228 IEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTA 287

Query: 441 CAHAGLVEEGRQ 452
           C      EEG+Q
Sbjct: 288 CGALAASEEGKQ 299



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 43/200 (21%)

Query: 333 FSSILSMSSG---IVDLHLGMQIHQMVTKTVI--PDVPINNALITMYARCGAIVEARIIF 387
           +++ILS ++G      + +   +H ++ KT +  P   + N L+T YA+ G +  AR +F
Sbjct: 12  YAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVF 71

Query: 388 EEM---------KLL---------------------KNVVSWNAMIGGCASHGFATEALE 417
           +EM          LL                     ++ VS+NA+I G +S G    +++
Sbjct: 72  DEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQ 131

Query: 418 LFKS-MRSFKVLPTYITF---ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           L+++ +R   V PT IT    I V SA +   L      H + +   +G    +   + L
Sbjct: 132 LYRALLREESVRPTRITLSAMIMVASALSDRALGHS--VHCQVLRLGFGAYAFVG--SPL 187

Query: 474 VDIVGRHGRLEDAMDLIKGM 493
           VD+  + G + DA  + + M
Sbjct: 188 VDMYAKMGLIRDARRVFQEM 207


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 183/578 (31%), Positives = 312/578 (53%), Gaps = 62/578 (10%)

Query: 8   RREMAKARKLFDEMPQ----RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTW 63
           RR   +A+++ + + +     DV   N +I+ +  S  S   +  R +F+     D V+W
Sbjct: 91  RRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCF--SVCSNMTDACR-VFNESSVLDSVSW 147

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N++++GY + G +EEA  +++ MP R++++ N+MI  F   G V  A + FD M  +D  
Sbjct: 148 NSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMV 207

Query: 124 SLSALVSGLIQNGELDEAARVLV---KCGSRCD---GGEDLVRAYNTLIVGYGQRGRVEE 177
           + SAL++   QN   +EA R  V   K G   D       L    N L+V  G       
Sbjct: 208 TWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG------- 260

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
             KL   + +     E  +  +      N++I  Y+K GD++ AR++F++          
Sbjct: 261 --KLIHSLSLKIGT-ESYINLQ------NALIYMYSKCGDIMVARKLFDEA--------- 302

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
                  ++LD+               ++WN+M+SGY +   ++ A   F  MP+K++VS
Sbjct: 303 -------YLLDL---------------ISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVS 340

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           W+SMI+G   N  ++  + LF +MQ+ G KPD  T  S++S  + +  L  G  +H  + 
Sbjct: 341 WSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIK 400

Query: 358 KT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           +  +  +V +   LI MY +CG +  A  +F  M + K + +WNA+I G A +G    +L
Sbjct: 401 RNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNALILGLAMNGLVESSL 459

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
           ++F +M+   V P  ITF+ VL AC H GLV+EG+ HF SM++++ I+P ++H+  +VD+
Sbjct: 460 DMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDL 519

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           +GR G+L++A +L+  MP  PD A WGALLGAC+ H + E+ +     L++++P++   +
Sbjct: 520 LGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFH 579

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           VLL N+YA  G+WDD  E+R +M  + + K  G S ++
Sbjct: 580 VLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIE 617



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/461 (27%), Positives = 208/461 (45%), Gaps = 74/461 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+ +     M  A ++F+E    D VSWN +++GYI     G +EEA++++  MPER  
Sbjct: 119 LINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEI---GNVEEAKHIYHQMPERSI 175

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           +  N++I  +   G + EA +LF+ M  +++V+W+A+I+ F QN     AI  F  M   
Sbjct: 176 IASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMH-- 233

Query: 121 DSASLSALVSGLIQNGELDEAARVLV-------KCGSRCDGGEDLVRAYNTLIVGYGQRG 173
               +  +V  ++    L   A +LV          S   G E  +   N LI  Y + G
Sbjct: 234 ---KIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCG 290

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
            +  ARKLFD+             +  +++SWNSMI  Y K   V +A+ IF+ M E+D 
Sbjct: 291 DIMVARKLFDE------------AYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDV 338

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSG---------------- 273
            SW++MISGY      +E   LF +M      PD  T  +++S                 
Sbjct: 339 VSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAY 398

Query: 274 -------------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
                              Y + G +E AL+ F  M +K + +WN++I G   N   E +
Sbjct: 399 IKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESS 458

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSS--GIVD---LHLGMQIHQMVTKTVIPDVPINNA 369
           + +F  M+     P+  TF  +L      G+VD    H    IH      + P+V     
Sbjct: 459 LDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHD---HKIQPNVKHYGC 515

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           ++ +  R G + EA  +   M +  +V +W A++G C  HG
Sbjct: 516 MVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHG 556



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 124/283 (43%), Gaps = 29/283 (10%)

Query: 221 AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYA- 275
            R IF  +   + F WN MI  YI       A  L+  M       D  T+  ++   + 
Sbjct: 31  TRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSI 90

Query: 276 --------QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
                   Q+ N  L L F       ++   N++I       +   A ++F +  V    
Sbjct: 91  RRSEWEAKQVHNHVLKLGF-----DSDVYVRNTLINCFSVCSNMTDACRVFNESSV---- 141

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQI-HQMVTKTVIPDVPINNALITMYARCGAIVEARII 386
            D  +++SIL+    I ++     I HQM  +++I     +N++I ++   G +VEA  +
Sbjct: 142 LDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIA----SNSMIVLFGMRGLVVEACKL 197

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+EM L K++V+W+A+I     +    EA+  F  M    V+   +  +S LSACA+  +
Sbjct: 198 FDEM-LEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLV 256

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
           V  G+    S+  + G E  I    +L+ +  + G +  A  L
Sbjct: 257 VNMGKL-IHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKL 298


>gi|115479089|ref|NP_001063138.1| Os09g0407800 [Oryza sativa Japonica Group]
 gi|51091508|dbj|BAD36246.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51091564|dbj|BAD36301.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113631371|dbj|BAF25052.1| Os09g0407800 [Oryza sativa Japonica Group]
 gi|215740507|dbj|BAG97163.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 612

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 167/416 (40%), Positives = 248/416 (59%), Gaps = 17/416 (4%)

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +NTL+    + G +  AR+LFD++P            +R++VS+NSM+  Y   GD+  A
Sbjct: 160 WNTLLRACLRLGLLPAARRLFDEMP------------ERDVVSYNSMVAGYVAEGDLAGA 207

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           R +F+ M  RD  +WN+MISGY    DME A  +F  MP  D ++WN+M+ GYAQ G++E
Sbjct: 208 RNLFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVE 267

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK-PDRHTFSSILSMS 340
           +A   F  MP++++VSWN ++A     +D+   + LF  M  EG   P+  TF S+L+  
Sbjct: 268 MARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTAC 327

Query: 341 SGIVDLHLGMQIHQMVTKT---VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
           + + DL  G  +H +V +    ++PDV +   L+TMYA+CG +  AR IF  M   K+V 
Sbjct: 328 ANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGE-KSVP 386

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWN+MI G   HG + +ALELF  M      P   TFI VLS+CAH GLV EG   F  M
Sbjct: 387 SWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRM 446

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517
           V  Y IEP+ EHF  ++D++GR G LE + +LI+ +  +  +A+WG L+ A +  NN++L
Sbjct: 447 VRFYSIEPKSEHFGCMMDLLGRAGLLEQSENLIENLQGKVSEALWGILMSASQTQNNIKL 506

Query: 518 AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            +   + L+++ P    PY+LL N+YA  GRWDD  +VR +M+   ++K  G S V
Sbjct: 507 GEFVGKKLIEMRPTEVGPYILLSNIYAAEGRWDDVEKVRKVMEEKGVEKDAGLSLV 562



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 148/302 (49%), Gaps = 60/302 (19%)

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGEL 138
           A RL   +P  + V+WN ++   L+ G +  A   FD MP RD  S +++V+G +  G+L
Sbjct: 145 ARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDL 204

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
              AR L    +R D     V  +N++I GY + G +E ARK+FD +P            
Sbjct: 205 -AGARNLFDGMARRD-----VVTWNSMISGYSRHGDMENARKMFDAMP------------ 246

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK 258
           +R++VSWNSM+  YA+AGDV  AR +F+ M +R   SWN +++ Y  + D  E   LF  
Sbjct: 247 ERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDV 306

Query: 259 M-------PHPDTLT-------------------------WNAMVSG----------YAQ 276
           M       P+  T                           W+ +V            YA+
Sbjct: 307 MIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAK 366

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            G +E A + F  M +K++ SWNSMI G   +   E A++LF++M+ +G +P+  TF  +
Sbjct: 367 CGVMETAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICV 426

Query: 337 LS 338
           LS
Sbjct: 427 LS 428



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 163/328 (49%), Gaps = 43/328 (13%)

Query: 12  AKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYA 71
           A AR+L  ++P+ D V+WN ++   +     G L  AR LFD MPERD V++N++++GY 
Sbjct: 143 ASARRLLADIPRPDAVTWNTLLRACLRL---GLLPAARRLFDEMPERDVVSYNSMVAGYV 199

Query: 72  KTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSG 131
             G++  A  LF+ M  R+VV+WN+MISG+ ++GD+ NA + FD MP RD  S ++++ G
Sbjct: 200 AEGDLAGARNLFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDG 259

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD-------- 183
             Q G+++ A  V      R       + ++N ++  Y +     E   LFD        
Sbjct: 260 YAQAGDVEMARLVFDGMPKRS------IVSWNVILALYAKLRDWRECLGLFDVMIAEGNT 313

Query: 184 ----KIPVNCDRGEGNV------RFKRNIVS--WNSMI----------MCYAKAGDVVSA 221
               K  V+      N+      R+  ++V   W+ ++            YAK G + +A
Sbjct: 314 VPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETA 373

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQI 277
           REIF  M E+   SWN+MI GY      E+A  LF++M    P P+  T+  ++S  A  
Sbjct: 374 REIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHG 433

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGC 305
           G +      F RM +   +   S   GC
Sbjct: 434 GLVLEGWWCFDRMVRFYSIEPKSEHFGC 461


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 183/553 (33%), Positives = 297/553 (53%), Gaps = 40/553 (7%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G L  AR  F    E +  ++N ++  YAK  ++  A +LF+ +P  + VS+N +ISG+ 
Sbjct: 57  GRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYA 116

Query: 103 QNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
              +   A+  F RM       D  +LS L++      +L +     + C S   G +  
Sbjct: 117 DARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLIKQ----LHCFSVSGGFDSY 172

Query: 159 VRAYNTLIVGYGQRGRVEEARKLF---DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
               N  +  Y + G + EA  +F   D++              R+ VSWNSMI+ Y + 
Sbjct: 173 SSVNNAFVTYYSKGGLLREAVSVFYGMDEL--------------RDEVSWNSMIVAYGQH 218

Query: 216 GDVVSAREIFEQMLER----DTFSWNTMISGYI---HVLDMEEASNLFVKMP-HPDTLTW 267
            +   A  ++++M+ +    D F+  ++++      H++   +     +K   H ++   
Sbjct: 219 KEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVG 278

Query: 268 NAMVSGYAQIGNLELALD---FFKRMPQKNLVSWNSMIAGCETNKDY-EGAIKLFIQMQV 323
           + ++  Y++ G  +   D    F+ +   +LV WN+MI+G   N++  E A+K F QMQ 
Sbjct: 279 SGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQR 338

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD--VPINNALITMYARCGAIV 381
            G +PD  +F  + S  S +       QIH +  K+ IP   + +NNALI++Y + G + 
Sbjct: 339 IGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQ 398

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
           +AR +F+ M  L N VS+N MI G A HG  TEAL L++ M    + P  ITF++VLSAC
Sbjct: 399 DARWVFDRMPEL-NAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSAC 457

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
           AH G V+EG+++F +M   + IEP  EH++ ++D++GR G+LE+A   I  MP++P    
Sbjct: 458 AHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVA 517

Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
           W ALLGACR H N+ LA+ AA  LM ++P  +TPYV+L NMYAD  +W++   VR  M+ 
Sbjct: 518 WAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRG 577

Query: 562 NNIKKPTGYSWVD 574
             I+K  G SW++
Sbjct: 578 KRIRKKPGCSWIE 590



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 154/348 (44%), Gaps = 26/348 (7%)

Query: 226 EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
           + ++   T+  N  ++ Y     +  A   F     P+  ++N +V  YA+   + +A  
Sbjct: 36  KSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQ 95

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F  +PQ + VS+N++I+G    ++   A+ LF +M+  G + D  T S +++     VD
Sbjct: 96  LFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVD 155

Query: 346 LHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
             L  Q+H   V+        +NNA +T Y++ G + EA  +F  M  L++ VSWN+MI 
Sbjct: 156 --LIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIV 213

Query: 405 GCASHGFATEALELFKSM--RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
               H    +AL L+K M  + FK+     T  SVL+A      +  GRQ F   + + G
Sbjct: 214 AYGQHKEGAKALALYKEMIFKGFKI--DMFTLASVLNALTSLDHLIGGRQ-FHGKLIKAG 270

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP--FEPDKAVWGALLGACRVHNNVELAQV 520
                   + L+D   + G  +   D  K       PD  VW  ++    +  N EL++ 
Sbjct: 271 FHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSM--NEELSEE 328

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPT 568
           A ++  +++     P              DD + V +    +N+  P+
Sbjct: 329 AVKSFRQMQRIGHRP--------------DDCSFVCVTSACSNLSSPS 362



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 164/399 (41%), Gaps = 110/399 (27%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG------------------- 41
           ++  Y K  ++  AR+LFDE+PQ D VS+N +ISGY  +R                    
Sbjct: 80  IVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVD 139

Query: 42  ----SGFLEEARYLFDIMPERDCVTW-----------NTVISGYAKTGEMEEALRLFNSM 86
               SG +       D++ +  C +            N  ++ Y+K G + EA+ +F  M
Sbjct: 140 GFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGM 199

Query: 87  PA-RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS--------------ASLSALVSG 131
              R+ VSWN+MI  + Q+ + A A+  +  M  +                 SL  L+ G
Sbjct: 200 DELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGG 259

Query: 132 LIQNGELDEAA------------RVLVKCGSRCDG------------GEDLVRAYNTLIV 167
              +G+L +A                 KCG  CDG              DLV  +NT+I 
Sbjct: 260 RQFHGKLIKAGFHQNSHVGSGLIDFYSKCGG-CDGMYDSEKVFQEILSPDLV-VWNTMIS 317

Query: 168 GYGQRGRV-EEARKLFDKI------------------------PVNCDRGEGNVRFKRNI 202
           GY     + EEA K F ++                        P  C +  G +  K +I
Sbjct: 318 GYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHG-LAIKSHI 376

Query: 203 VS-----WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
            S      N++I  Y K+G++  AR +F++M E +  S+N MI GY       EA  L+ 
Sbjct: 377 PSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQ 436

Query: 258 KMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           +M      P+ +T+ A++S  A  G ++   ++F  M +
Sbjct: 437 RMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKE 475



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 58/243 (23%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD---------CV 61
           M  + K+F E+   D+V WN MISGY  S      EEA   F  M             CV
Sbjct: 294 MYDSEKVFQEILSPDLVVWNTMISGY--SMNEELSEEAVKSFRQMQRIGHRPDDCSFVCV 351

Query: 62  TW-------------------------------NTVISGYAKTGEMEEALRLFNSMPARN 90
           T                                N +IS Y K+G +++A  +F+ MP  N
Sbjct: 352 TSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELN 411

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA----SLSALVSGLIQNGELDEAARVLV 146
            VS+N MI G+ Q+G    A+  + RM     A    +  A++S     G++DE      
Sbjct: 412 AVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYF- 470

Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
                    E     Y+ +I   G+ G++EEA +  D +P           +K   V+W 
Sbjct: 471 NTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMP-----------YKPGSVAWA 519

Query: 207 SMI 209
           +++
Sbjct: 520 ALL 522



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 17/155 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
           +IS Y K   +  AR +FD MP+ + VS+N MI GY +  G G   EA  L+       I
Sbjct: 387 LISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGY-AQHGHG--TEALLLYQRMLDSGI 443

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVAN 109
            P +  +T+  V+S  A  G+++E    FN+M     +      ++ MI    + G +  
Sbjct: 444 APNK--ITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEE 501

Query: 110 AIEFFDRMPGR-DSASLSALVSGLIQNGELDEAAR 143
           A  F D MP +  S + +AL+    ++  +  A R
Sbjct: 502 AERFIDAMPYKPGSVAWAALLGACRKHKNMALAER 536


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 200/631 (31%), Positives = 318/631 (50%), Gaps = 88/631 (13%)

Query: 5   YVKRREMAKARKLFDEMPQR-DVVSWNVMISGYISSRGSGFLEEARYLFDIMPE------ 57
           YVK  +MA AR++FD M  + +V  WN+++ GY      G  EE+  LF  M E      
Sbjct: 360 YVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKV---GEFEESLSLFVQMHELGIAPD 416

Query: 58  -----------------RD----------------CVTWNTVISGYAKTGEMEEALRLFN 84
                            RD                C   N +IS YAK+  + +A+ +FN
Sbjct: 417 EHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFN 476

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAA-- 142
            MP ++ +SWN++ISG   NG  + AIE F RM                Q  ELD     
Sbjct: 477 RMPRQDTISWNSVISGCSSNGLNSEAIELFIRM--------------WTQGQELDSVTLL 522

Query: 143 RVLVKCG-SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK-- 199
            VL  C  SR      +V  Y+   V  G  G    A  L D      D    N  F+  
Sbjct: 523 SVLPACAQSRYWFAGRVVHGYS---VKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSM 579

Query: 200 --RNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
             +N+VSW +MI  Y +AG       + ++M    +  D F+  + +  +     +++  
Sbjct: 580 GQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGK 639

Query: 254 NLFVKMPHPDTL---------TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           ++     H  T+           NA++  Y +  N+E A   F R+  K+++SWN++I G
Sbjct: 640 SV-----HGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGG 694

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPD 363
              N     +  LF  M ++  +P+  T + IL  ++ I  L  G +IH   + +  + D
Sbjct: 695 YSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLED 753

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
              +NAL+ MY +CGA++ AR++F+ +   KN++SW  MI G   HGF   A+ LF+ MR
Sbjct: 754 SYASNALVDMYVKCGALLVARVLFDRLTK-KNLISWTIMIAGYGMHGFGKHAIALFEQMR 812

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
              + P   +F ++L AC H+GL  EGR+ FK+M  EY IEP+++H+  +VD++ R G L
Sbjct: 813 GSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDL 872

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
           ++A++ I+ MP EPD ++W +LL  CR+H NV+LA+  A+ + K+EPEN+  YVLL N+Y
Sbjct: 873 KEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIY 932

Query: 544 ADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A+  RW+   +++  +    +++ TGYSW++
Sbjct: 933 AEAERWEAVKKLKNKIGGRGLRENTGYSWIE 963



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 157/625 (25%), Positives = 260/625 (41%), Gaps = 126/625 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR--DVVSWNVMISGYISSRGSGFLEEARYLFDIM--- 55
           ++  Y+K  ++ +AR +FD MP +  DV  W  ++S Y  +   G  +EA  LF  M   
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKA---GDFQEAVSLFRQMQCC 198

Query: 56  ---PE---------------------------------RDCVTWNTVISGYAKTGEMEEA 79
              P+                                 + C   N +I+ Y++ G ME+A
Sbjct: 199 GVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDA 258

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRDSASLSALVSGLIQNGE 137
            R+F+SM  R+ +SWN+MI G   NG    A++ F +M   G + +S++ L         
Sbjct: 259 ARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVL--------- 309

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
                 VL  C                  +GYG  G+      +   +    D  +  + 
Sbjct: 310 -----SVLPACAG----------------LGYGLIGKAVHGYSVKSGLLWGLDSVQSGI- 347

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-DTFSWNTMISGYIHVLDMEEASNLF 256
              +    + ++  Y K GD+ SAR +F+ M  + +   WN ++ GY  V + EE+ +LF
Sbjct: 348 --DDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLF 405

Query: 257 VKMPH----PD-----------------------------------TLTWNAMVSGYAQI 277
           V+M      PD                                       NA++S YA+ 
Sbjct: 406 VQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKS 465

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
             +  A+  F RMP+++ +SWNS+I+GC +N     AI+LFI+M  +G++ D  T  S+L
Sbjct: 466 NMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVL 525

Query: 338 SMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
              +       G  +H    KT +I +  + NAL+ MY+ C        IF  M   KNV
Sbjct: 526 PACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMG-QKNV 584

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFK 455
           VSW AMI      G   +   L + M    + P      S L A A    +++G+  H  
Sbjct: 585 VSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGY 644

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN-N 514
           ++ N  G+E  +    +L+++  +   +E+A  LI       D   W  L+G    +N  
Sbjct: 645 TIRN--GMEKLLPVANALMEMYVKCRNVEEA-RLIFDRVTNKDVISWNTLIGGYSRNNFP 701

Query: 515 VELAQVAAEALMKVEPENSTPYVLL 539
            E   + ++ L++  P   T   +L
Sbjct: 702 NESFSLFSDMLLQFRPNAVTMTCIL 726



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 194/451 (43%), Gaps = 46/451 (10%)

Query: 87  PARNVVS-WNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV- 144
           P+R + S  N  I    Q GD+A A+       G D  S   +V    +   L+ A R  
Sbjct: 61  PSRALSSDVNLRIQRLCQAGDLAGALRLLGSDGGVDVRSYCMVVQLCGEERSLEAAKRAH 120

Query: 145 -LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
            L++  S    G         L++ Y + G + EAR +FD +P        +VR      
Sbjct: 121 ALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQ----AADVRV----- 171

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTM---ISGYIHVLDMEEASNLF 256
            W S++  YAKAGD   A  +F QM    +  D  + + +   +S    + + E    L 
Sbjct: 172 -WTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLL 230

Query: 257 VKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
            K+         NA+++ Y++ G +E A   F  M  ++ +SWNSMI GC +N  +  A+
Sbjct: 231 EKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAV 290

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-----------TVIPDV 364
            LF +M  +G +    T  S+L   +G+    +G  +H    K           + I D 
Sbjct: 291 DLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDA 350

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            + + L+ MY +CG +  AR +F+ M    NV  WN ++GG A  G   E+L LF  M  
Sbjct: 351 ALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHE 410

Query: 425 FKVLP------TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
             + P        +  I+ LS CA  GLV  G       + + G   +     +L+    
Sbjct: 411 LGIAPDEHAISCLLKCITCLS-CARDGLVAHG------YIVKLGFGAQCAVCNALISFYA 463

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           +   + DA+ +   MP + D   W +++  C
Sbjct: 464 KSNMIGDAVLVFNRMPRQ-DTISWNSVISGC 493



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 16/195 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  YVK   +  AR LFD + +++++SW +MI+GY      GF + A  LF+ M     
Sbjct: 760 LVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGY---GMHGFGKHAIALFEQMRGSGI 816

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
           E D  +++ ++     +G   E  R F +M         +  +  ++    + GD+  A+
Sbjct: 817 EPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEAL 876

Query: 112 EFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG-YG 170
           EF + MP    +S+      L+    + +  ++  K   +    E     Y  L+   Y 
Sbjct: 877 EFIESMPIEPDSSIWV---SLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYA 933

Query: 171 QRGRVEEARKLFDKI 185
           +  R E  +KL +KI
Sbjct: 934 EAERWEAVKKLKNKI 948


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 195/615 (31%), Positives = 319/615 (51%), Gaps = 71/615 (11%)

Query: 13  KARKLFDEMPQR-DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG-- 69
           +A  LF ++  R ++V+WNVMI G++ +   G  E++  L+ +    +C   +   +G  
Sbjct: 195 EAWSLFGKLENRSNIVAWNVMIGGFVEN---GMWEKSLELYSLAKNENCKLVSASFTGAF 251

Query: 70  -------------------------------------YAKTGEMEEALRLFNSMPARNVV 92
                                                YAK+G +E+A ++F+ +  + V 
Sbjct: 252 TACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVE 311

Query: 93  SWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKC 148
             NAMIS F+ NG   +A+  +++M       DS ++S+L+SG    G  D    V  + 
Sbjct: 312 LRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEV 371

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
             R    +  V   + L+  Y + G  E+A  +F  +             +R++V+W SM
Sbjct: 372 IKR--SMQSNVAIQSALLTMYYKCGSTEDADSVFYTMK------------ERDVVAWGSM 417

Query: 209 IMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNL----FVKMP 260
           I  + +      A ++F  M    ++ D+    ++IS  + + ++E    +      +  
Sbjct: 418 IAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGL 477

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             D     ++V  Y++ G  E A   F  MP KNLV+WNSMI+    N   E +I L  Q
Sbjct: 478 ESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQ 537

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGA 379
           +   G   D  + +++L   S +  L  G  +H    +  IP D+ + NALI MY +CG 
Sbjct: 538 ILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGC 597

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           +  A++IFE M   +N+V+WN+MI G  SHG   EA+ LFK M+  +  P  +TF+++++
Sbjct: 598 LKYAQLIFENMPR-RNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALIT 656

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           +C+H+G+VEEG   F+ M  EYG+EPR+EH+AS+VD++GR GRL+DA   I+GMP + D+
Sbjct: 657 SCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADR 716

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
           +VW  LL ACR H N+EL ++ A+ L+K+EP   + YV L N+Y +V  WD A  +R  M
Sbjct: 717 SVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASM 776

Query: 560 KSNNIKKPTGYSWVD 574
           K   +KK  G SW++
Sbjct: 777 KGRGLKKSPGCSWIE 791



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 138/562 (24%), Positives = 251/562 (44%), Gaps = 69/562 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR-----DVVSWNVMISGYISSRGSGFLEEAR------ 49
           +I+ YVK   +  A ++FD+M +      D+  WN +I GY      G  EE        
Sbjct: 96  LINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKY---GHFEEGLAQFCRM 152

Query: 50  --------------YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-NVVSW 94
                         Y+   M E D      +I  Y+      EA  LF  +  R N+V+W
Sbjct: 153 QELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAW 212

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI---QNGELDEAARVLVKCGSR 151
           N MI GF++NG    ++E +      +   +SA  +G      +GE+ +  R  V C   
Sbjct: 213 NVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQ-VHCDVI 271

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
               +D      +L+  Y + G VE+A+K+FD++              + +   N+MI  
Sbjct: 272 KMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQV------------LDKEVELRNAMISA 319

Query: 212 YAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT- 266
           +   G    A  ++ +M       D+F+ ++++SG   V      S  F +  H + +  
Sbjct: 320 FIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVV-----GSYDFGRTVHAEVIKR 374

Query: 267 --------WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
                    +A+++ Y + G+ E A   F  M ++++V+W SMIAG   N+ ++ A+ LF
Sbjct: 375 SMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLF 434

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARC 377
             M+ EG K D    +S++S   G+ ++ LG  IH    K  +  DV +  +L+ MY++ 
Sbjct: 435 RAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKF 494

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G    A ++F  M   KN+V+WN+MI   + +G    ++ L   +         ++  +V
Sbjct: 495 GFAESAEMVFSSMP-NKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTV 553

Query: 438 LSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           L A +    + +G+  H   +  +   + ++E+  +L+D+  + G L+ A  + + MP  
Sbjct: 554 LVAVSSVAALLKGKTLHAYQIRLQIPSDLQVEN--ALIDMYVKCGCLKYAQLIFENMP-R 610

Query: 497 PDKAVWGALLGACRVHNNVELA 518
            +   W +++     H N E A
Sbjct: 611 RNLVTWNSMIAGYGSHGNCEEA 632



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 193/448 (43%), Gaps = 51/448 (11%)

Query: 81  RLFNSMPARNVV-SWNAMISGFLQNGDVANAIEFFDRMPG--------------RDSASL 125
           R F S+    V  S N+ I   +Q G  + A+E   + P               +  ASL
Sbjct: 9   RKFYSLRQTEVSPSINSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASL 68

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           S L  G   +  +       V  G + D          +LI  Y + G +  A ++FDK+
Sbjct: 69  SNLYHGRTIHASI-------VTMGLQSDP-----YIATSLINMYVKCGLLGSALQVFDKM 116

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
             + D          +I  WN +I  Y K G        F +M E   +     I GYI 
Sbjct: 117 SESRDSAP-------DITVWNPVIDGYFKYGHFEEGLAQFCRMQELSWYMAGRQIHGYI- 168

Query: 246 VLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAG 304
                   N+F   P+ +T    A++  Y+       A   F ++  + N+V+WN MI G
Sbjct: 169 ------IRNMFEGDPYLET----ALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGG 218

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV 364
              N  +E +++L+   + E  K    +F+   +  S    L  G Q+H  V K    D 
Sbjct: 219 FVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDD 278

Query: 365 P-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           P +  +L+TMYA+ G++ +A+ +F+++ L K V   NAMI     +G A +AL L+  M+
Sbjct: 279 PYVCTSLLTMYAKSGSVEDAKKVFDQV-LDKEVELRNAMISAFIGNGRAYDALGLYNKMK 337

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
           + +      T  S+LS C+  G  + GR     ++    ++  +   ++L+ +  + G  
Sbjct: 338 AGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKR-SMQSNVAIQSALLTMYYKCGST 396

Query: 484 EDAMDLIKGMPFEPDKAVWGALL-GACR 510
           EDA  +   M  E D   WG+++ G C+
Sbjct: 397 EDADSVFYTMK-ERDVVAWGSMIAGFCQ 423


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 183/529 (34%), Positives = 290/529 (54%), Gaps = 45/529 (8%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
           +I+ Y+ T  +  A+ +FN +P  NV  +N +I  +  +G+ +N++  F  +       L
Sbjct: 60  LIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVL-------L 112

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGED------LVRAY-------------NTLI 166
              V G++ +   +     L+K    C+G         +V A+             N+LI
Sbjct: 113 KMHVDGVLAD---NFTYPFLLK---GCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLI 166

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
             Y + G VE A K+F  +             +R++VSWNSM+    K GD+  A ++F+
Sbjct: 167 DCYCRCGDVEMAMKVFSGME------------ERDVVSWNSMVGGLVKNGDLDGALKVFD 214

Query: 227 QMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
           +M ERD  SWNTM+ G+    +M++A  LF +M   D ++W+ MV GY++ G++++A   
Sbjct: 215 EMPERDRVSWNTMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARML 274

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F R P KNLV W ++I+G       + A+ L  +M+  G + D   F SIL+  +    L
Sbjct: 275 FDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGML 334

Query: 347 HLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
            LG ++H    ++       + N+ I MYA+CG + +A  +F  MK  K++VSWN+MI G
Sbjct: 335 GLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHG 394

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
              HG   +++ELF +M      P   TFI +L AC HAGLV EGR +F SM   YGI P
Sbjct: 395 FGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVP 454

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
           +IEH+  +VD++GR G L++A  L++ MPFEP+  + G LLGACR+HN+V+LA   ++ L
Sbjct: 455 QIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIILGTLLGACRMHNDVKLATSVSKYL 514

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            K+ P +   + LL N+YA  G W +  +VR  M     +KP+G S ++
Sbjct: 515 FKLVPSDPGNFSLLSNIYAQSGDWINVAKVRKQMNDEGGQKPSGVSSIE 563



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 198/388 (51%), Gaps = 33/388 (8%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N++I  Y + G++E A+++F+ M  R+VVSWN+M+ G ++NGD+  A++ FD MP RD  
Sbjct: 163 NSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRV 222

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S + ++ G  + GE+D+A ++  +   R     D+V +++T++ GY + G ++ AR LFD
Sbjct: 223 SWNTMLDGFTKAGEMDKAFKLFERMAER-----DIV-SWSTMVCGYSKNGDMDMARMLFD 276

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTM 239
           + PV            +N+V W ++I  YA+ G V  A  + ++M    L  D   + ++
Sbjct: 277 RCPV------------KNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISI 324

Query: 240 I-----SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRM-PQK 293
           +     SG + +      S L  +     T   N+ +  YA+ G ++ A   F  M  +K
Sbjct: 325 LAACAESGMLGLGKKMHDSFLRSRF-RCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEK 383

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQ 351
           +LVSWNSMI G   +   E +I+LF  M  EG KPDR+TF  +L   +  G+V+   G  
Sbjct: 384 DLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRGYF 443

Query: 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
                   ++P +     ++ +  R G + EA  +   M    N +    ++G C  H  
Sbjct: 444 YSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIILGTLLGACRMHND 503

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLS 439
              A  + K +  FK++P+     S+LS
Sbjct: 504 VKLATSVSKYL--FKLVPSDPGNFSLLS 529



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 194/404 (48%), Gaps = 34/404 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y +  ++  A K+F  M +RDVVSWN M+ G + +   G L+ A  +FD MPERD 
Sbjct: 165 LIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKN---GDLDGALKVFDEMPERDR 221

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT++ G+ K GEM++A +LF  M  R++VSW+ M+ G+ +NGD+  A   FDR P +
Sbjct: 222 VSWNTMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVK 281

Query: 121 DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           +    + ++SG  + G++ EA  +   + K G R D G      + +++    + G +  
Sbjct: 282 NLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDG-----FFISILAACAESGMLGL 336

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LERDTFSW 236
            +K+ D    +        RF+ +    NS I  YAK G V  A  +F  M  E+D  SW
Sbjct: 337 GKKMHDSFLRS--------RFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSW 388

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           N+MI G+      E++  LF  M      PD  T+  ++      G +     +F  M +
Sbjct: 389 NSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRGYFYSMQR 448

Query: 293 -----KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
                  +  +  M+         + A  L   M  E   P+     ++L       D+ 
Sbjct: 449 VYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMPFE---PNAIILGTLLGACRMHNDVK 505

Query: 348 LGMQIHQMVTKTVIPDVPINNALIT-MYARCGAIVEARIIFEEM 390
           L   + + + K ++P  P N +L++ +YA+ G  +    + ++M
Sbjct: 506 LATSVSKYLFK-LVPSDPGNFSLLSNIYAQSGDWINVAKVRKQM 548



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 149/367 (40%), Gaps = 57/367 (15%)

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
           ++ +  L +D +    +I+ Y    ++  A N+F ++P P+   +N ++  Y+  GN   
Sbjct: 44  QLIKCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNES- 102

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
                           NS+            A  + ++M V+G   D  T+  +L   +G
Sbjct: 103 ----------------NSLC-----------AFGVLLKMHVDGVLADNFTYPFLLKGCNG 135

Query: 343 IVD-LHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
               L L   +H  V K     D+ + N+LI  Y RCG +  A  +F  M+  ++VVSWN
Sbjct: 136 SSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAMKVFSGME-ERDVVSWN 194

Query: 401 AMIGGCASHGFATEALELFKSM----------------------RSFKVLPTYITFISVL 438
           +M+GG   +G    AL++F  M                      ++FK+         V 
Sbjct: 195 SMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEMDKAFKLFERMAERDIVS 254

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP---F 495
            +    G  + G      M+ +      +  + +++      G++++AM+L   M     
Sbjct: 255 WSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGL 314

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY-NMYADVGRWDDANE 554
             D   + ++L AC     + L +   ++ ++     ST  +  + +MYA  G  DDA  
Sbjct: 315 RLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFR 374

Query: 555 VRLLMKS 561
           V   MK+
Sbjct: 375 VFNGMKT 381


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 219/713 (30%), Positives = 337/713 (47%), Gaps = 143/713 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I  Y K   +  A+K+FD + +RD VSW  M+SG      SG  EEA  LF  M     
Sbjct: 211 LIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGL---SQSGCEEEAVLLFCQMHTSGV 267

Query: 59  -------------------------------------DCVTWNTVISGYAKTGEMEEALR 81
                                                +    N +++ Y++ G    A +
Sbjct: 268 YPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQ 327

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGE 137
           +FN+M  R+ VS+N++ISG  Q G    A+E F +M       D  ++++L+S     G 
Sbjct: 328 VFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGA 387

Query: 138 LDEAAR----------------------VLVKCGSRCDGGE-------DLVRAYNTLIVG 168
           L    +                      + VKC       E       + V  +N ++V 
Sbjct: 388 LLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVA 447

Query: 169 YGQRGRVEEARKLFDKIPV---------------NC------DRGEG------NVRFKRN 201
           YG    + E+ K+F ++ +                C      D GE          F+ N
Sbjct: 448 YGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFN 507

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP- 260
           +   + +I  YAK G +  A +IF ++ E+D  SW  MI+GY       EA NLF +M  
Sbjct: 508 VYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQD 567

Query: 261 ---HPDTLTW-----------------------------------NAMVSGYAQIGNLEL 282
              H D + +                                   NA+VS YA+ G +  
Sbjct: 568 QGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRD 627

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F ++  K+ +SWNS+I+G   +   E A+ LF QM   G++ +  TF   +S ++ 
Sbjct: 628 AYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAAN 687

Query: 343 IVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           + ++ LG QIH M+ KT    +  ++N LIT+YA+CG I +A   F EM   KN +SWNA
Sbjct: 688 VANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPE-KNEISWNA 746

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           M+ G + HG   +AL LF+ M+   VLP ++TF+ VLSAC+H GLV+EG ++F+SM   +
Sbjct: 747 MLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVH 806

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           G+ P+ EH+A +VD++GR G L  A   ++ MP +PD  V   LL AC VH N+++ + A
Sbjct: 807 GLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFA 866

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A  L+++EP++S  YVLL NMYA  G+W   +  R +MK   +KK  G SW++
Sbjct: 867 ASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIE 919



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 174/710 (24%), Positives = 297/710 (41%), Gaps = 145/710 (20%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-FLEEARYLFD--IMPE---- 57
           Y+   ++  A  +FDEMP R +  WN ++  +++ + +G  L   R +    + P+    
Sbjct: 113 YIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTY 172

Query: 58  ----RDC--------------------------VTWNTVISGYAKTGEMEEALRLFNSMP 87
               R C                             N +I  Y K G +  A ++F+ + 
Sbjct: 173 AGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQ 232

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRM--------PGRDSASLSAL----------- 128
            R+ VSW AM+SG  Q+G    A+  F +M        P   S+ LSA            
Sbjct: 233 KRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQ 292

Query: 129 VSGLI--QNGELDE-AARVLVKCGSRCDG---GEDLVRA--------YNTLIVGYGQRGR 174
           + GL+  Q   L+      LV   SR       E +  A        YN+LI G  Q+G 
Sbjct: 293 LHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGY 352

Query: 175 VEEARKLFDKIPVNCDRGEG---------------------------NVRFKRNIVSWNS 207
            ++A +LF K+ ++C + +                                  +I+   +
Sbjct: 353 SDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGA 412

Query: 208 MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPD 263
           ++  Y K  D+ +A E F      +   WN M+  Y  + ++ E+  +F +M      P+
Sbjct: 413 LLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPN 472

Query: 264 TLTW-----------------------------------NAMVSGYAQIGNLELALDFFK 288
             T+                                   + ++  YA++G L+ AL  F+
Sbjct: 473 QFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFR 532

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
           R+ +K++VSW +MIAG   ++ +  A+ LF +MQ +G   D   F+S +S  +GI  L+ 
Sbjct: 533 RLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQ 592

Query: 349 GMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G QIH Q        D+ + NAL+++YARCG + +A   F+++   K+ +SWN++I G A
Sbjct: 593 GQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKI-FSKDNISWNSLISGFA 651

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
             G   EAL LF  M          TF   +SA A+   V+ G+Q   +M+ + G +   
Sbjct: 652 QSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQ-IHAMIIKTGHDSET 710

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL-- 525
           E    L+ +  + G ++DA      MP E ++  W A+L     H +   A    E +  
Sbjct: 711 EVSNVLITLYAKCGNIDDAERQFFEMP-EKNEISWNAMLTGYSQHGHGFKALSLFEDMKQ 769

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN--IKKPTGYSWV 573
           + V P N   +V + +  + VG  D+  +    M+  +  + KP  Y+ V
Sbjct: 770 LGVLP-NHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACV 818


>gi|125605648|gb|EAZ44684.1| hypothetical protein OsJ_29310 [Oryza sativa Japonica Group]
          Length = 612

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 167/416 (40%), Positives = 248/416 (59%), Gaps = 17/416 (4%)

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +NTL+    + G +  AR+LFD++P            +R++VS+NSM+  Y   GD+  A
Sbjct: 160 WNTLLRACLRLGLLPAARRLFDEMP------------ERDVVSYNSMVAGYVAEGDLAGA 207

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           R +F+ M  RD  +WN+MISGY    DME A  +F  MP  D ++WN+M+ GYAQ G++E
Sbjct: 208 RNLFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVE 267

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK-PDRHTFSSILSMS 340
           +A   F  MP++++VSWN ++A     +D+   + LF  M  EG   P+  TF S+L+  
Sbjct: 268 MARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTAC 327

Query: 341 SGIVDLHLGMQIHQMVTKT---VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
           + + DL  G  +H +V +    ++PDV +   L+TMYA+CG +  AR IF  M   K+V 
Sbjct: 328 ANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGE-KSVP 386

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWN+MI G   HG + +ALELF  M      P   TFI VLS+CAH GLV EG   F  M
Sbjct: 387 SWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRM 446

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517
           V  Y IEP+ EHF  ++D++GR G LE + +LI+ +  +  +A+WG L+ A +  NN++L
Sbjct: 447 VRFYSIEPKSEHFGCMMDLLGRAGLLEQSENLIENLQGKVSEALWGILMSASQTQNNIKL 506

Query: 518 AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            +   + L+++ P    PY+LL N+YA  GRWDD  +VR +M+   ++K  G S V
Sbjct: 507 GEFVGKKLIEMRPTEVGPYILLSNIYAAEGRWDDVEKVRKVMEEKGVEKDAGLSLV 562



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 148/302 (49%), Gaps = 60/302 (19%)

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGEL 138
           A RL   +P  + V+WN ++   L+ G +  A   FD MP RD  S +++V+G +  G+L
Sbjct: 145 ARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDL 204

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
              AR L    +R D     V  +N++I GY + G +E ARK+FD +P            
Sbjct: 205 -AGARNLFDGMARRD-----VVTWNSMISGYSRHGDMENARKMFDAMP------------ 246

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK 258
           +R++VSWNSM+  YA+AGDV  AR +F+ M +R   SWN +++ Y  + D  E   LF  
Sbjct: 247 ERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDV 306

Query: 259 M-------PHPDTLT-------------------------WNAMVSG----------YAQ 276
           M       P+  T                           W+ +V            YA+
Sbjct: 307 MIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAK 366

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            G +E A + F  M +K++ SWNSMI G   +   E A++LF++M+ +G +P+  TF  +
Sbjct: 367 CGVMETAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICV 426

Query: 337 LS 338
           LS
Sbjct: 427 LS 428



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 163/328 (49%), Gaps = 43/328 (13%)

Query: 12  AKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYA 71
           A AR+L  ++P+ D V+WN ++   +     G L  AR LFD MPERD V++N++++GY 
Sbjct: 143 ASARRLLADIPRPDAVTWNTLLRACLRL---GLLPAARRLFDEMPERDVVSYNSMVAGYV 199

Query: 72  KTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSG 131
             G++  A  LF+ M  R+VV+WN+MISG+ ++GD+ NA + FD MP RD  S ++++ G
Sbjct: 200 AEGDLAGARNLFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDG 259

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD-------- 183
             Q G+++ A  V      R       + ++N ++  Y +     E   LFD        
Sbjct: 260 YAQAGDVEMARLVFDGMPKRS------IVSWNVILALYAKLRDWRECLGLFDVMIAEGNT 313

Query: 184 ----KIPVNCDRGEGNV------RFKRNIVS--WNSMI----------MCYAKAGDVVSA 221
               K  V+      N+      R+  ++V   W+ ++            YAK G + +A
Sbjct: 314 VPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETA 373

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQI 277
           REIF  M E+   SWN+MI GY      E+A  LF++M    P P+  T+  ++S  A  
Sbjct: 374 REIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHG 433

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGC 305
           G +      F RM +   +   S   GC
Sbjct: 434 GLVLEGWWCFDRMVRFYSIEPKSEHFGC 461


>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
          Length = 587

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 177/524 (33%), Positives = 283/524 (54%), Gaps = 55/524 (10%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS----WNAMISGFLQNGDVANAIEFF 114
           D  + + V+   ++ G ++E +++   +    + S     N +I  +L+ G +  A + F
Sbjct: 98  DKFSLSLVLKACSRLGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIF 157

Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
           DRMP RDS S                                     YN++I GY + G 
Sbjct: 158 DRMPQRDSVS-------------------------------------YNSMIDGYVKCGL 180

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDT 233
           +  AR+LFD +P          +  +N++SWNSMI  YA+  D V+ A ++F +M E+D 
Sbjct: 181 IGSARELFDLMP----------KEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDL 230

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
            SWN++I GY+    ME+A +LF  MP  D +TW  M+ GYA++G +  A   F +MP +
Sbjct: 231 ISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHR 290

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQI 352
           ++V++NSM+AG   NK +  A+++F  M+ +    PD  T   +LS  + +  L   M +
Sbjct: 291 DVVAYNSMMAGYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSM 350

Query: 353 HQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           ++ + +   P    +  ALI M+++CG+I +A  +FE +K  K++  WNAMIGG A HG 
Sbjct: 351 NKYIVEKSFPLGGKLGVALIDMHSKCGSIQQAISVFEGIKN-KSIDHWNAMIGGLAIHGH 409

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
              A ++   +    + P  ITFI VL+AC+H+GLV+EG   F+ M  ++ IEPR++H+ 
Sbjct: 410 GELAFDMLMQIERCSIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYG 469

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            +VDI+ R G +E A  LI+ MP EP+  +W   L ACR     E+ ++ A+ L+     
Sbjct: 470 CIVDILSRSGSIELAKHLIEDMPMEPNDVIWRTFLIACRNRKEFEIGELVAKHLILQAGY 529

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           N + YVLL NMYA +G W D   VR++MK   + K  G SW++ 
Sbjct: 530 NPSSYVLLSNMYASLGMWKDVRRVRMMMKQRKLHKIPGCSWIEL 573



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 207/425 (48%), Gaps = 76/425 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--R 58
           +I  Y+K   +  AR++FD MPQRD VS+N MI GY+     G +  AR LFD+MP+  +
Sbjct: 140 LIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVK---CGLIGSARELFDLMPKEMK 196

Query: 59  DCVTWNTVISGYAKTGE-MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           + ++WN++ISGYA+T + +  A +LF  MP ++++SWN++I G++++G + +A + F  M
Sbjct: 197 NLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKDLFYVM 256

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P RD  + + ++ G                                     Y + G V +
Sbjct: 257 PRRDVVTWATMIDG-------------------------------------YAKLGFVHK 279

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-----LERD 232
           A+ LFD++P             R++V++NSM+  Y +    + A EIF  M     L  D
Sbjct: 280 AKTLFDQMP------------HRDVVAYNSMMAGYVQNKYHMEALEIFNNMEKDSHLSPD 327

Query: 233 TFSWNTMISGYIHVLDMEEASNL---FVKMPHPDTLTWN-AMVSGYAQIGNLELALDFFK 288
             +   ++S    +  + +A ++    V+   P       A++  +++ G+++ A+  F+
Sbjct: 328 ETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFPLGGKLGVALIDMHSKCGSIQQAISVFE 387

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS------- 341
            +  K++  WN+MI G   +   E A  + +Q++    KPD  TF  +L+  S       
Sbjct: 388 GIKNKSIDHWNAMIGGLAIHGHGELAFDMLMQIERCSIKPDDITFIGVLNACSHSGLVKE 447

Query: 342 GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           G++   L  + H+     + P +     ++ + +R G+I  A+ + E+M +  N V W  
Sbjct: 448 GLLSFELMRRKHK-----IEPRLQHYGCIVDILSRSGSIELAKHLIEDMPMEPNDVIWRT 502

Query: 402 MIGGC 406
            +  C
Sbjct: 503 FLIAC 507


>gi|119638460|gb|ABL85051.1| hypothetical protein 57h21.26 [Brachypodium sylvaticum]
          Length = 753

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 193/627 (30%), Positives = 304/627 (48%), Gaps = 109/627 (17%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G ++    +FD +   +   WN ++SG      + +A R+FN MPARNVVSW AM+ G +
Sbjct: 140 GVVDCLERVFDDVDSPNVALWNALVSGLVMNHRVGDARRVFNRMPARNVVSWTAMVKGHV 199

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR---------------VLVK 147
              DV  A+E F+ MP ++S S   ++ GL+   +  EA                 +LVK
Sbjct: 200 SVHDVGQAVELFNLMPVKNSVSWCVMIGGLVHCQQFREAVELFNSLMRNGDEVTNVILVK 259

Query: 148 C-----------GSRCDGGEDLVRAY-------NTLIVGYGQRGRVEEARKLFDKIPVNC 189
                       G RC  G  +   +        +L+  Y     ++EAR  FDK+    
Sbjct: 260 VVNAYAGLKSIGGGRCIHGFSVKSGFVHDLIIEASLVAMYCNSLDIDEARLEFDKMD--- 316

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
                    ++ + SWN++I  Y  A  +  A  IFE M  RD  SWN+MI+GYI    +
Sbjct: 317 ---------RKQVGSWNAIIRGYIYAEKIDEAENIFESMTYRDKVSWNSMINGYIRDGRI 367

Query: 250 EEASNLFVKMPHP-------------------------------DTLTWNAMVSGYAQIG 278
            +A+ L+ KMP                                 D ++  A++ GY + G
Sbjct: 368 ADATELYSKMPEKNVEAATALMSWFIDNGKLGKARDMFYSLPQVDVMSCTALLFGYMKEG 427

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAG------------------------CET------- 307
            L+ ALD F RM ++  V++N MIAG                        C         
Sbjct: 428 YLDDALDLFHRMHKRTAVTYNVMIAGFLHQGKVAEAYKLFNESPAHDATTCSCFVTGLAQ 487

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPI 366
           N     A+KL+ +M V          SS++S  S    +  G+Q+H    K      + I
Sbjct: 488 NGLIHDALKLYKKMLVSNMHTSESVVSSLISCCSHHSMIVHGLQLHATTIKLGFELYLII 547

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            N+LI++Y++CG +V A+ IF++M + ++VV+WN +I G A +     A+E+FK+M+  +
Sbjct: 548 QNSLISLYSKCGEMVAAQNIFDQM-VKRDVVTWNTLIHGYAFNSLGQNAIEMFKNMKIAQ 606

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           V P  ITF+ VLSAC H  L+EE +  F  M  +YGI P + H+A +VD++ R G +E+A
Sbjct: 607 VDPDEITFLGVLSACNHMSLLEEAKHFFDVMTCDYGIAPNMMHYACMVDLLCRRGMVEEA 666

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
             L+K MPFEPD A+W +LL +CR+  + +LA+ AA  L+ + P    PY+ L N++  +
Sbjct: 667 EGLMKSMPFEPDSAIWTSLLSSCRLSGSDKLAEHAASQLIAINPCTKMPYLHLINVHGSM 726

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWV 573
            +W   + +R  +  +  +K  GYSW+
Sbjct: 727 DKWAVIDSLRSQITRSTTEKEVGYSWI 753



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 189/408 (46%), Gaps = 27/408 (6%)

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC-- 148
           VVS N ++   L+ G    A E FD MP RD  S ++ +S   ++G    AA + ++   
Sbjct: 25  VVSGNRLMGAHLRAGRPDAAREVFDGMPRRDVVSWNSAMSAHARSGAHAGAAGLFLELRR 84

Query: 149 -GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
            G R DG      + +T++    +   +E  R +      +C  G        N+    S
Sbjct: 85  RGVRPDG-----TSLSTVLSACARLEALELGRCVHGLALRSCSTG--------NVFVGAS 131

Query: 208 MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW 267
           ++  YA  G V     +F+ +   +   WN ++SG +    + +A  +F +MP  + ++W
Sbjct: 132 LVTMYASCGVVDCLERVFDDVDSPNVALWNALVSGLVMNHRVGDARRVFNRMPARNVVSW 191

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
            AMV G+  + ++  A++ F  MP KN VSW  MI G    + +  A++LF  +   G++
Sbjct: 192 TAMVKGHVSVHDVGQAVELFNLMPVKNSVSWCVMIGGLVHCQQFREAVELFNSLMRNGDE 251

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARII 386
                   +++  +G+  +  G  IH    K+  + D+ I  +L+ MY     I EAR+ 
Sbjct: 252 VTNVILVKVVNAYAGLKSIGGGRCIHGFSVKSGFVHDLIIEASLVAMYCNSLDIDEARLE 311

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F++M   K V SWNA+I G        EA  +F+SM +++   ++ + I+        G 
Sbjct: 312 FDKMD-RKQVGSWNAIIRGYIYAEKIDEAENIFESM-TYRDKVSWNSMIN--------GY 361

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           + +GR    + +     E  +E   +L+     +G+L  A D+   +P
Sbjct: 362 IRDGRIADATELYSKMPEKNVEAATALMSWFIDNGKLGKARDMFYSLP 409



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 128/540 (23%), Positives = 227/540 (42%), Gaps = 88/540 (16%)

Query: 26  VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNS 85
           VVS N ++  ++ +   G  + AR +FD MP RD V+WN+ +S +A++G    A  LF  
Sbjct: 25  VVSGNRLMGAHLRA---GRPDAAREVFDGMPRRDVVSWNSAMSAHARSGAHAGAAGLFLE 81

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS--------ALVSGLIQNGE 137
           +  R V      +S  L       A+E    + G    S S        +LV+     G 
Sbjct: 82  LRRRGVRPDGTSLSTVLSACARLEALELGRCVHGLALRSCSTGNVFVGASLVTMYASCGV 141

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           +D   RV        D     V  +N L+ G     RV +AR++F+++P           
Sbjct: 142 VDCLERVFD------DVDSPNVALWNALVSGLVMNHRVGDARRVFNRMPA---------- 185

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF- 256
             RN+VSW +M+  +    DV  A E+F  M  +++ SW  MI G +H     EA  LF 
Sbjct: 186 --RNVVSWTAMVKGHVSVHDVGQAVELFNLMPVKNSVSWCVMIGGLVHCQQFREAVELFN 243

Query: 257 --------------VKMPHP------------------------DTLTWNAMVSGYAQIG 278
                         VK+ +                         D +   ++V+ Y    
Sbjct: 244 SLMRNGDEVTNVILVKVVNAYAGLKSIGGGRCIHGFSVKSGFVHDLIIEASLVAMYCNSL 303

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
           +++ A   F +M +K + SWN++I G    +  + A  +F  M       D+ +++S++ 
Sbjct: 304 DIDEARLEFDKMDRKQVGSWNAIIRGYIYAEKIDEAENIFESMTYR----DKVSWNSMI- 358

Query: 339 MSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
             +G +         ++ +K    +V    AL++ +   G + +AR +F  +  + +V+S
Sbjct: 359 --NGYIRDGRIADATELYSKMPEKNVEAATALMSWFIDNGKLGKARDMFYSLPQV-DVMS 415

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
             A++ G    G+  +AL+LF  M       T +T+  +++   H G V E  + F    
Sbjct: 416 CTALLFGYMKEGYLDDALDLFHRMHK----RTAVTYNVMIAGFLHQGKVAEAYKLF---- 467

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNV 515
           NE          +  V  + ++G + DA+ L K M        ++V  +L+  C  H+ +
Sbjct: 468 NESPAHDATT-CSCFVTGLAQNGLIHDALKLYKKMLVSNMHTSESVVSSLISCCSHHSMI 526


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 197/627 (31%), Positives = 322/627 (51%), Gaps = 71/627 (11%)

Query: 1    MISGYVKRREMAKARKLFDEMPQR-DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
            +I  Y       +A  LF ++  R ++V+WNVMI G++ +   G  E++  L+ +    +
Sbjct: 588  LIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVEN---GMWEKSLELYSLAKNEN 644

Query: 60   CVTWNTVISG---------------------------------------YAKTGEMEEAL 80
            C   +   +G                                       YAK+G +E+A 
Sbjct: 645  CKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAK 704

Query: 81   RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNG 136
            ++F+ +  + V   NAMIS F+ NG   +A+  +++M       DS ++S+L+SG    G
Sbjct: 705  KVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVG 764

Query: 137  ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
              D    V  +   R    +  V   + L+  Y + G  E+A  +F  +           
Sbjct: 765  SYDFGRTVHAEVIKR--SMQSNVAIQSALLTMYYKCGSTEDADSVFYTMK---------- 812

Query: 197  RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA 252
              +R++V+W SMI  + +      A ++F  M    ++ D+    ++IS  + + ++E  
Sbjct: 813  --ERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELG 870

Query: 253  SNL----FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
              +      +    D     ++V  Y++ G  E A   F  MP KNLV+WNSMI+    N
Sbjct: 871  HLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWN 930

Query: 309  KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPIN 367
               E +I L  Q+   G   D  + +++L   S +  L  G  +H    +  IP D+ + 
Sbjct: 931  GLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVE 990

Query: 368  NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
            NALI MY +CG +  A++IFE M   +N+V+WN+MI G  SHG   EA+ LFK M+  + 
Sbjct: 991  NALIDMYVKCGCLKYAQLIFENMPR-RNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSET 1049

Query: 428  LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
             P  +TF++++++C+H+G+VEEG   F+ M  EYG+EPR+EH+AS+VD++GR GRL+DA 
Sbjct: 1050 APDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAY 1109

Query: 488  DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
              I+GMP + D++VW  LL ACR H N+EL ++ A+ L+K+EP   + YV L N+Y +V 
Sbjct: 1110 SFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVE 1169

Query: 548  RWDDANEVRLLMKSNNIKKPTGYSWVD 574
             WD A  +R  MK   +KK  G SW++
Sbjct: 1170 MWDRAANLRASMKGRGLKKSPGCSWIE 1196



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 137/582 (23%), Positives = 256/582 (43%), Gaps = 90/582 (15%)

Query: 1    MISGYVKRREMAKARKLFDEMPQR-----DVVSWNVMISGY------------------- 36
            +I+ YVK   +  A ++FD+M +      D+  WN +I GY                   
Sbjct: 482  LINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQEL 541

Query: 37   --------------ISSRGSGFLEEAR---YLFDIMPERDCVTWNTVISGYAKTGEMEEA 79
                          I +R S ++   +   Y+   M E D      +I  Y+      EA
Sbjct: 542  GIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEA 601

Query: 80   LRLFNSMPAR-NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI---QN 135
              LF  +  R N+V+WN MI GF++NG    ++E +      +   +SA  +G      +
Sbjct: 602  WSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSH 661

Query: 136  GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
            GE+ +  R  V C       +D      +L+  Y + G VE+A+K+FD++          
Sbjct: 662  GEVLDFGRQ-VHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQV---------- 710

Query: 196  VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG--------- 242
                + +   N+MI  +   G    A  ++ +M       D+F+ ++++SG         
Sbjct: 711  --LDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDF 768

Query: 243  ----YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
                +  V+     SN+ ++         +A+++ Y + G+ E A   F  M ++++V+W
Sbjct: 769  GRTVHAEVIKRSMQSNVAIQ---------SALLTMYYKCGSTEDADSVFYTMKERDVVAW 819

Query: 299  NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
             SMIAG   N+ ++ A+ LF  M+ EG K D    +S++S   G+ ++ LG  IH    K
Sbjct: 820  GSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIK 879

Query: 359  TVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
              +  DV +  +L+ MY++ G    A ++F  M   KN+V+WN+MI   + +G    ++ 
Sbjct: 880  RGLESDVFVACSLVDMYSKFGFAESAEMVFSSMP-NKNLVAWNSMISCYSWNGLPEMSIN 938

Query: 418  LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDI 476
            L   +         ++  +VL A +    + +G+  H   +  +   + ++E+  +L+D+
Sbjct: 939  LLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVEN--ALIDM 996

Query: 477  VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
              + G L+ A  + + MP   +   W +++     H N E A
Sbjct: 997  YVKCGCLKYAQLIFENMP-RRNLVTWNSMIAGYGSHGNCEEA 1037



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 147/344 (42%), Gaps = 40/344 (11%)

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-----NLVSWNSMIAGCETNKDYEGAI 315
             D     ++++ Y + G L  AL  F +M +      ++  WN +I G      +E  +
Sbjct: 473 QSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGL 532

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMY 374
             F +MQ  G +PD ++ S +L + + +     G QIH  + + +    P +  ALI MY
Sbjct: 533 AQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMY 592

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           + C   +EA  +F +++   N+V+WN MIGG   +G   ++LEL+   ++        +F
Sbjct: 593 SSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASF 652

Query: 435 ISVLSACAHAGLVEEGRQ--------HFK-------SMVNEYGIEPRIEHFASLVDIVGR 479
               +AC+H  +++ GRQ        +F+       S++  Y     +E    + D V  
Sbjct: 653 TGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLD 712

Query: 480 ---------------HGRLEDAMDL---IKGMPFEPDKAVWGALLGACRVHNNVELAQ-V 520
                          +GR  DA+ L   +K      D     +LL  C V  + +  + V
Sbjct: 713 KEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTV 772

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
            AE + +    N      L  MY   G  +DA+ V   MK  ++
Sbjct: 773 HAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDV 816



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 8/203 (3%)

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNA 369
           Y  A++L  +         + TF S+L   + + +L+ G  IH  +VT  +  D  I  +
Sbjct: 422 YSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATS 481

Query: 370 LITMYARCGAIVEARIIFEEMKLLK----NVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           LI MY +CG +  A  +F++M   +    ++  WN +I G   +G   E L  F  M+  
Sbjct: 482 LINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQEL 541

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
            + P   +   VL  C        GRQ H   + N +  +P +E   +L+ +     R  
Sbjct: 542 GIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLE--TALIGMYSSCSRPM 599

Query: 485 DAMDLIKGMPFEPDKAVWGALLG 507
           +A  L   +    +   W  ++G
Sbjct: 600 EAWSLFGKLENRSNIVAWNVMIG 622


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 198/629 (31%), Positives = 320/629 (50%), Gaps = 76/629 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR-DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           +++ Y K  ++  ARKLFD M  R DVVSWN +IS Y    G+G   EA  LF  M +  
Sbjct: 99  LVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAY---SGNGMCTEALCLFSEMLKAG 155

Query: 60  CVT---------------------------------------WNTVISGYAKTGEMEEAL 80
            VT                                        N +++ Y + G+M EA 
Sbjct: 156 VVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAA 215

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-SASLSALVSGLIQNGEL- 138
            +F ++  +++V+WN+M++GF+QNG  + A+EFF  +   D      +++S ++ +G L 
Sbjct: 216 VIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLG 275

Query: 139 -----DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
                 E     +K     +G +  +   NTLI  Y +   +    + FD +        
Sbjct: 276 YLLNGKEIHAYAIK-----NGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMA------- 323

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL------ 247
                 ++++SW +    YA+    + A E+  Q+         TMI   +         
Sbjct: 324 -----HKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCL 378

Query: 248 -DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
             ++E     ++    D +  N ++  Y + G ++ A+  F+ +  K++VSW SMI+   
Sbjct: 379 GKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYV 438

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVP 365
            N     A+++F  M+  G +PD  T  SILS    +  L  G +IH  ++ K  I +  
Sbjct: 439 HNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGS 498

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           I+N L+ MYARCG++ +A  IF   K  +N++ W AMI     HG+   A+ELF  M+  
Sbjct: 499 ISNTLVDMYARCGSVEDAYKIFTCTKN-RNLILWTAMISAYGMHGYGEAAVELFMRMKDE 557

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
           K++P +ITF+++L AC+H+GLV EG+   + M  EY +EP  EH+  LVD++GR   LE+
Sbjct: 558 KIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEE 617

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A  ++K M  EP   VW ALLGACR+H+N E+ +VAAE L++++ +N   YVL+ N++A 
Sbjct: 618 AYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAA 677

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            GRW D  EVR+ MK + + K  G SW++
Sbjct: 678 NGRWKDVEEVRMRMKGSGLTKNPGCSWIE 706



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 168/586 (28%), Positives = 273/586 (46%), Gaps = 81/586 (13%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-RGSGFLE---EARYL---FD---- 53
           Y K   +  A  +FD+M +R + +WN M+ GY+S+    G LE   E R+L   FD    
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 54  --------IMPERDC-----------------VTWNTVISGYAKTGEMEEALRLFNSMPA 88
                   I+ +  C                    N++++ YAK  ++  A +LF+ M  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 89  RN-VVSWNAMISGFLQNGDVANAIEFFDRMPGRD--------SASLSALV-SGLIQNGEL 138
           RN VVSWN++IS +  NG    A+  F  M            +A+L A   S  I+ G  
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
             AA  ++K G   D     V   N L+  Y + G++ EA  +F           GN+  
Sbjct: 182 IHAA--ILKSGRVLD-----VYVANALVAMYVRFGKMPEAAVIF-----------GNLEG 223

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMI--SGYI-HVLDMEE 251
           K +IV+WNSM+  + + G    A E F  +    L+ D  S  ++I  SG + ++L+ +E
Sbjct: 224 K-DIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKE 282

Query: 252 ASNLFVKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
                +K     + L  N ++  YA+   +      F  M  K+L+SW +  AG   NK 
Sbjct: 283 IHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKC 342

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNAL 370
           Y  A++L  Q+Q+EG   D     SIL    G+  L    +IH    +  + D  + N +
Sbjct: 343 YLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTI 402

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           I +Y  CG I  A  IFE ++  K+VVSW +MI     +G A +ALE+F SM+   + P 
Sbjct: 403 IDVYGECGIIDYAVRIFESIE-CKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPD 461

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNE-YGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
           Y+T +S+LSA      +++G++    ++ + + +E  I +  +LVD+  R G +EDA  +
Sbjct: 462 YVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISN--TLVDMYARCGSVEDAYKI 519

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
                   +  +W A++ A  +H      + A E  M+++ E   P
Sbjct: 520 FTCTK-NRNLILWTAMISAYGMHG---YGEAAVELFMRMKDEKIIP 561



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 233/502 (46%), Gaps = 56/502 (11%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASL 125
           Y K G + +A  +F+ M  R++ +WNAM+ G++ NG+   A+E +  M       DS + 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 126 SALV--SGLIQNGELDEAARVLVKCGSRCD------GGEDLVRAYNTLIVGYGQRGRVEE 177
             L+   G++++          + CG+         G +  V   N+L+  Y +   +  
Sbjct: 62  PVLLKACGIVED----------LFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDING 111

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDT 233
           ARKLFD++ V           + ++VSWNS+I  Y+  G    A  +F +ML+     +T
Sbjct: 112 ARKLFDRMYV-----------RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNT 160

Query: 234 FSWNTMI-----SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
           +++   +     S +I  L M+  + +       D    NA+V+ Y + G +  A   F 
Sbjct: 161 YTFAAALQACEDSSFIK-LGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFG 219

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            +  K++V+WNSM+ G   N  Y  A++ F  +Q    KPD+ +  SI+  S  +  L  
Sbjct: 220 NLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLN 279

Query: 349 GMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G +IH    K     ++ + N LI MYA+C  +      F+ M   K+++SW     G A
Sbjct: 280 GKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMA-HKDLISWTTAAAGYA 338

Query: 408 SHGFATEALELFK--SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
            +    +ALEL +   M    V  T I   S+L AC     + + ++     +     +P
Sbjct: 339 QNKCYLQALELLRQLQMEGMDVDATMIG--SILLACRGLNCLGKIKEIHGYTIRGGLSDP 396

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
            +++  +++D+ G  G ++ A+ + + +  + D   W +++ +C VHN   LA  A E  
Sbjct: 397 VLQN--TIIDVYGECGIIDYAVRIFESIECK-DVVSWTSMI-SCYVHNG--LANKALEVF 450

Query: 526 MKVEPENSTP-YVLLYNMYADV 546
             ++     P YV L ++ + V
Sbjct: 451 SSMKETGLEPDYVTLVSILSAV 472



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 6/138 (4%)

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY +CG++++A +IF++M   +++ +WNAM+GG  S+G A  ALE+++ MR   V     
Sbjct: 1   MYGKCGSVLDAEMIFDKMS-ERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSY 59

Query: 433 TFISVLSACAHAGLVEE--GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
           TF  +L AC   G+VE+         +  +YG +  +    SLV +  +   +  A  L 
Sbjct: 60  TFPVLLKAC---GIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLF 116

Query: 491 KGMPFEPDKAVWGALLGA 508
             M    D   W +++ A
Sbjct: 117 DRMYVRNDVVSWNSIISA 134


>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
 gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 170/420 (40%), Positives = 241/420 (57%), Gaps = 21/420 (5%)

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           V  +N +I GYG+ G ++ A  LFDK+              RN VSW  MI  +A++GD+
Sbjct: 23  VVTWNAMISGYGKNGDMKSASVLFDKMST------------RNAVSWIEMIDGFARSGDM 70

Query: 219 VSAREIFEQM-LE-RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQ 276
           V+AR  F ++  E ++  +W  MI GY    +ME A  LF  MP  +   W++M+SGY +
Sbjct: 71  VAARRTFNEVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYCK 130

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
           IGN++ A   F R+P +NLV+WNS+I G   N   E A+  F +MQ EG +PD  T   +
Sbjct: 131 IGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGV 190

Query: 337 LSMSSGIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           LS  + +  L +G  +H+M+  K +  +  + NAL+ MYA+CG +  AR+IFE M   KN
Sbjct: 191 LSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMT-NKN 249

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
              WN+MI G A HG   EALE F  M      P  ITF+SVLSAC H G VE G + F 
Sbjct: 250 NACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEIFS 309

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
            M   YG+   I+H+  LVD++GR GR++DA  LIK MP +P+  VWGA LGACR+H + 
Sbjct: 310 KM-ERYGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTVWGAFLGACRIHMDN 368

Query: 516 ELAQVAAEALM----KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           ++ +   E +      V+  N   Y LL N+YA  G W+ A  V ++M    ++K +G S
Sbjct: 369 DMVEQVVEDVCTSDSSVDSGNDPHYALLLNIYAGSGSWEKAGRVSMVMADRGLQKTSGRS 428



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 198/378 (52%), Gaps = 29/378 (7%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G + ++R LF+ MPER+ VTWN +ISGY K G+M+ A  LF+ M  RN VSW  MI GF 
Sbjct: 6   GDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFA 65

Query: 103 QNGDVANAIEFFDRMPG--RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR 160
           ++GD+  A   F+ +P   ++  + + ++ G    GE+ EAAR+L +     D  +    
Sbjct: 66  RSGDMVAARRTFNEVPFELKNVVTWTVMIDGYASKGEM-EAARLLFE-----DMPQRNFF 119

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
            ++++I GY + G V+EAR +FD++PV            RN+V+WNS+I  Y++ G    
Sbjct: 120 VWSSMISGYCKIGNVKEARAIFDRVPV------------RNLVNWNSLICGYSQNGFCEE 167

Query: 221 AREIFEQM----LERDTFSWNTMIS--GYIHVLDMEEASNLFV--KMPHPDTLTWNAMVS 272
           A + F +M     E D  +   ++S    + +LD+ +  +  +  K    +    NA+V 
Sbjct: 168 ALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVD 227

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
            YA+ G+L  A   F+RM  KN   WNSMI+G   +   + A++ F +M+   EKPD  T
Sbjct: 228 MYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEIT 287

Query: 333 FSSILSMSSGIVDLHLGMQI-HQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
           F S+LS       + +G++I  +M    +   +     L+ +  R G I +A  + + M 
Sbjct: 288 FLSVLSACVHGGFVEVGLEIFSKMERYGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMP 347

Query: 392 LLKNVVSWNAMIGGCASH 409
           +  N   W A +G C  H
Sbjct: 348 MKPNDTVWGAFLGACRIH 365



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 52/329 (15%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y K  ++  +RKLF+ MP+R+VV+WN MISGY     +G ++ A  LFD M  R+ V+W 
Sbjct: 2   YAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGK---NGDMKSASVLFDKMSTRNAVSWI 58

Query: 65  TVISGYAKTGEMEEALRLFNSMP--ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS 122
            +I G+A++G+M  A R FN +P   +NVV+W  MI G+   G++  A   F+ MP R+ 
Sbjct: 59  EMIDGFARSGDMVAARRTFNEVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNF 118

Query: 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
              S+++SG  + G + EA  +  +   R     +LV  +N+LI GY Q G  EEA   F
Sbjct: 119 FVWSSMISGYCKIGNVKEARAIFDRVPVR-----NLVN-WNSLICGYSQNGFCEEALDAF 172

Query: 183 DKI--------------------------------PVNCDRGEGNVRFKRNIVSWNSMIM 210
            K+                                 + C +G      K N    N+++ 
Sbjct: 173 GKMQNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMICAKG-----MKLNEFVVNALVD 227

Query: 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT 266
            YAK GD+  AR IFE+M  ++   WN+MISG+      +EA   F +M      PD +T
Sbjct: 228 MYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEIT 287

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           + +++S     G +E+ L+ F +M +  L
Sbjct: 288 FLSVLSACVHGGFVEVGLEIFSKMERYGL 316



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 132/287 (45%), Gaps = 36/287 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI GY  + EM  AR LF++MPQR+   W+ MISGY      G ++EAR +FD +P R+ 
Sbjct: 93  MIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYCK---IGNVKEARAIFDRVPVRNL 149

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG------DVANAIEFF 114
           V WN++I GY++ G  EEAL  F  M           + G L         DV   +   
Sbjct: 150 VNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKM 209

Query: 115 DRMPGR--DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
               G   +   ++ALV    + G+L  A  +  +  ++ +        +N++I G+   
Sbjct: 210 ICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNA------CWNSMISGFAVH 263

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           G+ +EA + F ++       E N   K + +++ S++      G V    EIF +M   +
Sbjct: 264 GKTKEALEFFGRME------ESNE--KPDEITFLSVLSACVHGGFVEVGLEIFSKM---E 312

Query: 233 TFSWNTMISGYIHVLDM-------EEASNLFVKMP-HPDTLTWNAMV 271
            +  +  I  Y  ++D+       ++A +L   MP  P+   W A +
Sbjct: 313 RYGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTVWGAFL 359



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 12/143 (8%)

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MYA+CG I ++R +FE M   +NVV+WNAMI G   +G    A  LF  M +       +
Sbjct: 1   MYAKCGDIPDSRKLFEYMPE-RNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNA----V 55

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR-IEHFASLVDIVGRHGRLEDAMDLIK 491
           ++I ++   A +G +   R+ F    NE   E + +  +  ++D     G +E A  L +
Sbjct: 56  SWIEMIDGFARSGDMVAARRTF----NEVPFELKNVVTWTVMIDGYASKGEMEAARLLFE 111

Query: 492 GMPFEPDKAVWGALL-GACRVHN 513
            MP + +  VW +++ G C++ N
Sbjct: 112 DMP-QRNFFVWSSMISGYCKIGN 133


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 191/622 (30%), Positives = 324/622 (52%), Gaps = 71/622 (11%)

Query: 6   VKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD---IMP--ERD- 59
           VK+ ++ K+R +FD+M  RD +SW  +I+GY+++  S    EA  LF    + P  +RD 
Sbjct: 101 VKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDS---YEALILFSNMWVQPGLQRDQ 157

Query: 60  ----------------------------------CVTWNTVISGYAKTGEMEEALRLFNS 85
                                                 + +I  Y K G++E+  R+F  
Sbjct: 158 FMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKK 217

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDEA 141
           M  RNVVSW A+I+G +  G    A+ +F  M     G DS + +  +     +  L   
Sbjct: 218 MTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHG 277

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +  +   +  G ++     NTL   Y + G+ +   +LF+K+ +             +
Sbjct: 278 KAIHTQTIKQ--GFDESSFVINTLATMYNKCGKADYVMRLFEKMKMP------------D 323

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDM---EEASN 254
           +VSW ++I  Y + G+   A E F++M    +  + +++  +IS   ++      E+   
Sbjct: 324 VVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHG 383

Query: 255 LFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
             +++   D L+  N++V+ Y++ G L+ A   F  + +K+++SW+++IA        + 
Sbjct: 384 HVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKE 443

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALIT 372
           A      M+ EG KP+    SS+LS+   +  L  G Q+H  V    I  +  +++ALI+
Sbjct: 444 AFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALIS 503

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY++CG++ EA  IF  MK+  N++SW AMI G A HG++ EA+ LF+ + S  + P Y+
Sbjct: 504 MYSKCGSVEEASKIFNGMKI-NNIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYV 562

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TFI VL+AC+HAG+V+ G  +F  M NEY I P  EH+  ++D++ R GRL +A  +I+ 
Sbjct: 563 TFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRS 622

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
           MP   D  VW  LL +CRVH +V+  +  AE L++++P ++  ++ L N+YA  GRW +A
Sbjct: 623 MPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALANIYAAKGRWKEA 682

Query: 553 NEVRLLMKSNNIKKPTGYSWVD 574
             +R LMKS  + K  G+SWV+
Sbjct: 683 AHIRKLMKSKGVIKERGWSWVN 704



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 215/468 (45%), Gaps = 41/468 (8%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM---PG- 119
           N+ +    K G++ ++  +F+ M  R+ +SW  +I+G++   D   A+  F  M   PG 
Sbjct: 94  NSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGL 153

Query: 120 -RD----SASLSALVSGL-IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
            RD    S +L A   G+ I  GEL     V         G  + V   + LI  Y + G
Sbjct: 154 QRDQFMISVALKACGLGVNICFGELLHGFSVK-------SGLINSVFVSSALIDMYMKVG 206

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----- 228
           ++E+  ++F K+             KRN+VSW ++I     AG  + A   F +M     
Sbjct: 207 KIEQGCRVFKKMT------------KRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKV 254

Query: 229 -LERDTFSWNTMISGYIHVLDMEEA--SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
             +  TF+     S    +L   +A  +    +     +   N + + Y + G  +  + 
Sbjct: 255 GYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMR 314

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F++M   ++VSW ++I       + E A++ F +M+     P+++TF++++S  + +  
Sbjct: 315 LFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAI 374

Query: 346 LHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
              G QIH  V +  + D + + N+++T+Y++ G +  A ++F  +   K+++SW+ +I 
Sbjct: 375 AKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGIT-RKDIISWSTIIA 433

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
             +  G+A EA +    MR     P      SVLS C    L+E+G+Q   + V   GI+
Sbjct: 434 VYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQ-VHAHVLCIGID 492

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
                 ++L+ +  + G +E+A  +  GM    +   W A++     H
Sbjct: 493 HEAMVHSALISMYSKCGSVEEASKIFNGMKIN-NIISWTAMINGYAEH 539



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 195/471 (41%), Gaps = 78/471 (16%)

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y   G   E R+L  +     ++   N     N++  NS +    K G +  +R +F++M
Sbjct: 59  YSSPGTATECRELIQQ--AKQEQLAQNAYSVHNMLELNSELKQLVKQGQLCKSRYMFDKM 116

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKM-PHP------------------------- 262
             RD  SW T+I+GY++  D  EA  LF  M   P                         
Sbjct: 117 THRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGVNICFG 176

Query: 263 --------------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
                              +A++  Y ++G +E     FK+M ++N+VSW ++IAG    
Sbjct: 177 ELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHA 236

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-IN 367
                A+  F +M +     D HTF+  L  S+    LH G  IH    K    +   + 
Sbjct: 237 GYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVI 296

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           N L TMY +CG       +FE+MK + +VVSW  +I      G    A+E FK MR   V
Sbjct: 297 NTLATMYNKCGKADYVMRLFEKMK-MPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNV 355

Query: 428 LPTYITFISVLSACAHAGLVEEGRQ---HF------------KSMVNEY----------- 461
            P   TF +V+SACA+  + + G Q   H              S+V  Y           
Sbjct: 356 SPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASL 415

Query: 462 ---GIEPR-IEHFASLVDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGACRVHNN 514
              GI  + I  +++++ +  + G  ++A D +  M  E   P++    ++L  C     
Sbjct: 416 VFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMAL 475

Query: 515 VELA-QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           +E   QV A  L       +  +  L +MY+  G  ++A+++   MK NNI
Sbjct: 476 LEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNI 526



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 144/344 (41%), Gaps = 41/344 (11%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQ----MLERDTFSWNTMISGYIHVLDMEEAS 253
           F RN+ S     + Y+  G     RE+ +Q     L ++ +S + M              
Sbjct: 49  FSRNLDS----PLTYSSPGTATECRELIQQAKQEQLAQNAYSVHNM-------------- 90

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
                      L  N+ +    + G L  +   F +M  ++ +SW ++IAG     D   
Sbjct: 91  -----------LELNSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYE 139

Query: 314 AIKLFIQMQVE-GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALI 371
           A+ LF  M V+ G + D+   S  L      V++  G  +H    K+ +I  V +++ALI
Sbjct: 140 ALILFSNMWVQPGLQRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALI 199

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            MY + G I +   +F++M   +NVVSW A+I G    G+  EAL  F  M   KV    
Sbjct: 200 DMYMKVGKIEQGCRVFKKMT-KRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDS 258

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
            TF   L A A + L+  G+      + + G +       +L  +  + G+ +  M L +
Sbjct: 259 HTFAIALKASADSSLLHHGKAIHTQTIKQ-GFDESSFVINTLATMYNKCGKADYVMRLFE 317

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
            M   PD   W  L+    V    E  + A EA  ++   N +P
Sbjct: 318 KMKM-PDVVSWTTLI-TTYVQKGEE--EHAVEAFKRMRKSNVSP 357


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 183/580 (31%), Positives = 308/580 (53%), Gaps = 23/580 (3%)

Query: 9   REMAKARKLFDEMPQRDVVSWNVM---ISGYISSRGSGFLEEARYLFDIMPERDCVTWNT 65
           + MA+ +++  +     ++S  ++   I  +      G +E AR +FD MP  +   WN 
Sbjct: 30  KSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNN 89

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVV----SWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           +I GY++ G    A+ ++  M  R V+    ++  ++  F ++  V    E  D +    
Sbjct: 90  MIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLG 149

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
            +S   + + LI    L     V      R   G+  V  +N +I GY +  + +E+ KL
Sbjct: 150 FSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGD--VVTWNVMISGYNRSKQFDESMKL 207

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWN 237
           FD++          +R   + ++  S++   +K  D+   + +   +    +E      N
Sbjct: 208 FDEME--------RMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLEN 259

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
            +I  Y    DM+ A  +F  M   D ++W A+V+G+  +G + LA ++F +MP+++ VS
Sbjct: 260 ALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVS 319

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           W +MI G      ++  + LF +MQ    KPD  T  SIL+  + +  L LG  I   + 
Sbjct: 320 WTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYID 379

Query: 358 KTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           K  I  D  + NALI MY  CG + +A  IF  M   ++ +SW A+I G A +G+  EAL
Sbjct: 380 KNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPH-RDKISWTAVIFGLAINGYGEEAL 438

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
           ++F  M    + P  +T I VL AC H+G+V++G++ F  M  ++GIEP + H+  +VD+
Sbjct: 439 DMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDL 498

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           +GR G L++A ++IK MP +P+  VWG+LLGACRVH + E+A++AA+ ++++EPEN   Y
Sbjct: 499 LGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVY 558

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           VLL N+YA   RW+  +EVR LM    IKK  G S ++ +
Sbjct: 559 VLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMN 598



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 168/395 (42%), Gaps = 95/395 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEA------------ 48
           +I  Y    E++ AR +FD   + DVV+WNVMISGY  +R   F E              
Sbjct: 160 LIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGY--NRSKQFDESMKLFDEMERMRVL 217

Query: 49  --------------------------RYLFDIMPERDCVTWNTVISGYAKTGEMEEALRL 82
                                     RY+ D+  E   V  N +I  YA  G+M+ AL +
Sbjct: 218 PSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGI 277

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQ-------- 134
           F++M +R+V+SW A+++GF   G V  A  +FD+MP RD  S +A++ G +Q        
Sbjct: 278 FDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVL 337

Query: 135 ---------NGELDEAARVLVKCGSRCDGGEDL---VRAY-------------NTLIVGY 169
                    N + DE   V +       G  +L   ++AY             N LI  Y
Sbjct: 338 SLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMY 397

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
              G VE+A ++F+ +P             R+ +SW ++I   A  G    A ++F QML
Sbjct: 398 FNCGNVEKAIRIFNAMP------------HRDKISWTAVIFGLAINGYGEEALDMFSQML 445

Query: 230 ER----DTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNL 280
           +     D  +   ++    H   +++    F +M       P+   +  MV    + G+L
Sbjct: 446 KASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHL 505

Query: 281 ELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGA 314
           + A +  K MP K N + W S++  C  ++D E A
Sbjct: 506 KEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMA 540


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 205/631 (32%), Positives = 321/631 (50%), Gaps = 89/631 (14%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE------- 57
           YV   ++ K R++FD +    +  WN+++S Y      G   E+  LF+ M E       
Sbjct: 102 YVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKI---GNYRESVGLFEKMQELGIRGDS 158

Query: 58  ----------------RDC----------------VTWNTVISGYAKTGEMEEALRLFNS 85
                           R+C                   N++I+ Y K GE+E A  LF+ 
Sbjct: 159 YTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDE 218

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEA 141
           +  R+VVSWN+MISG   NG   N +EFF +M       DSA+L  ++      G L   
Sbjct: 219 LSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLT-L 277

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            R L   G +  G    V   NTL+  Y + G +  A ++F K+      GE        
Sbjct: 278 GRALHAYGVKA-GFSGGVMFNNTLLDMYSKCGNLNGANEVFVKM------GE------TT 324

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG-------------YI 244
           IVSW S+I  + + G    A  +F++M    L  D ++  +++               + 
Sbjct: 325 IVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHN 384

Query: 245 HVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           H+      SNL V          NA+++ YA+ G++E A   F ++P KN+VSWN+MI G
Sbjct: 385 HIKKNNMGSNLPVS---------NALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGG 435

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPD 363
              N     A++LF+ MQ +  KPD  T + +L   +G+  L  G +IH  ++ K    D
Sbjct: 436 YSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSD 494

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           + +  AL+ MY +CG +V A+ +F+ M   K+++ W  MI G   HGF  EA+  F+ MR
Sbjct: 495 LHVACALVDMYVKCGLLVLAQQLFD-MIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMR 553

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
              + P   +F S+L AC H+GL++EG + F SM +E  IEP++EH+A +VD++ R G L
Sbjct: 554 VAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNL 613

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
             A   I+ MP +PD A+WGALL  CR+H++VELA+  AE + ++EPEN+  YVLL N+Y
Sbjct: 614 SRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVY 673

Query: 544 ADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A+  +W++  +++  +    +K   G SW++
Sbjct: 674 AEAEKWEEVKKIQRRISKGGLKNDQGCSWIE 704



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 152/552 (27%), Positives = 245/552 (44%), Gaps = 108/552 (19%)

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGE---LDEAARV--- 144
            V  NA I  F + GD+ NA++   R   R    L+   S L    E   L++  RV   
Sbjct: 24  TVDKNAKICKFCEMGDLRNAMKLLSR-SQRSELELNTYCSVLQLCAELKSLEDGKRVHSI 82

Query: 145 -------------------LVKCGSRCDGGE-------DLVRAYNTLIVGYGQRGRVEEA 178
                               V CG    G         D +  +N L+  Y + G   E+
Sbjct: 83  ISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRES 142

Query: 179 RKLFDKIP------------------------VNCDRGEGNVRFKRNIVSW----NSMIM 210
             LF+K+                           C R  G V  K    S+    NS+I 
Sbjct: 143 VGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYV-LKLGFGSYNAVVNSLIA 201

Query: 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISG-------------YIHVL----DMEEAS 253
            Y K G+V SAR +F+++ +RD  SWN+MISG             +I +L    D++ A+
Sbjct: 202 AYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSAT 261

Query: 254 --NLFVKMPHPDTLTW--------------------NAMVSGYAQIGNLELALDFFKRMP 291
             N+ V   +   LT                     N ++  Y++ GNL  A + F +M 
Sbjct: 262 LVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMG 321

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           +  +VSW S+IA       +  AI LF +MQ +G +PD +  +S++   +    L  G +
Sbjct: 322 ETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGRE 381

Query: 352 IHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +H  + K  +  ++P++NAL+ MYA+CG++ EA +IF ++  +KN+VSWN MIGG + + 
Sbjct: 382 VHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLP-VKNIVSWNTMIGGYSQNS 440

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
              EAL+LF  M+  ++ P  +T   VL ACA    +E+GR+    ++ + G    +   
Sbjct: 441 LPNEALQLFLDMQK-QLKPDDVTMACVLPACAGLAALEKGREIHGHILRK-GYFSDLHVA 498

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL--MKV 528
            +LVD+  + G L  A  L   +P + D  +W  ++    +H   + A    E +    +
Sbjct: 499 CALVDMYVKCGLLVLAQQLFDMIP-KKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGI 557

Query: 529 EPENSTPYVLLY 540
           EPE S+   +LY
Sbjct: 558 EPEESSFTSILY 569



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 201/461 (43%), Gaps = 69/461 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGF----LEEARYLFDIMP 56
           +I+ Y K  E+  AR LFDE+  RDVVSWN MISG      +GF    LE    + ++  
Sbjct: 199 LIAAYFKCGEVESARILFDELSDRDVVSWNSMISG---CTMNGFSRNGLEFFIQMLNLGV 255

Query: 57  ERDCVTW-----------------------------------NTVISGYAKTGEMEEALR 81
           + D  T                                    NT++  Y+K G +  A  
Sbjct: 256 DVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANE 315

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F  M    +VSW ++I+  ++ G    AI  FD M  +    D  +++++V     +  
Sbjct: 316 VFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNS 375

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           LD+   V      + + G +L  + N L+  Y + G +EEA  +F ++PV          
Sbjct: 376 LDKGREVHNHI-KKNNMGSNLPVS-NALMNMYAKCGSMEEANLIFSQLPV---------- 423

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIF---EQMLERDTFSWNTMISGYIHVLDMEEA-- 252
             +NIVSWN+MI  Y++      A ++F   ++ L+ D  +   ++     +  +E+   
Sbjct: 424 --KNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQLKPDDVTMACVLPACAGLAALEKGRE 481

Query: 253 --SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
              ++  K    D     A+V  Y + G L LA   F  +P+K+++ W  MIAG   +  
Sbjct: 482 IHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGF 541

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINN 368
            + AI  F +M+V G +P+  +F+SIL   +    L  G ++   +     + P +    
Sbjct: 542 GKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYA 601

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            ++ +  R G +  A    E M +  +   W A++ GC  H
Sbjct: 602 CMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIH 642



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 86/156 (55%), Gaps = 17/156 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           ++  YVK   +  A++LFD +P++D++ W VMI+GY      GF +EA   F+ M     
Sbjct: 501 LVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGY---GMHGFGKEAISTFEKMRVAGI 557

Query: 56  -PERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVAN 109
            PE    ++ +++     +G ++E  +LF+SM +       +  +  M+   +++G+++ 
Sbjct: 558 EPEES--SFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSR 615

Query: 110 AIEFFDRMPGR-DSASLSALVSGLIQNGELDEAARV 144
           A +F + MP + D+A   AL+SG   + +++ A +V
Sbjct: 616 AYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKV 651


>gi|357118977|ref|XP_003561223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 604

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 165/420 (39%), Positives = 247/420 (58%), Gaps = 18/420 (4%)

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +NTL+    + G +  AR+LFD++P             R++VS+NSM+  YA  GD+  A
Sbjct: 157 WNTLLRACLRSGLLPSARRLFDQMP------------HRDLVSYNSMLSSYAAVGDMAGA 204

Query: 222 REIFEQMLERDTFSWNTMISGYIHV-LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNL 280
             +F++M ERD  +WNTM++GY     DM  A  +F  MP  D ++WN+M+ GYAQ G++
Sbjct: 205 GRLFDEMPERDVVTWNTMLAGYARGGADMASARAVFDAMPERDVVSWNSMLDGYAQAGDV 264

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG-EKPDRHTFSSILSM 339
            +A   F  MP+++  SWN ++A     KD+   ++LF  M   G   P+  TF S+L+ 
Sbjct: 265 VMAWAMFDGMPRRSAASWNVVLALYARRKDWRECLRLFDAMMAVGVSVPNEKTFVSVLTA 324

Query: 340 SSGIVDLHLGMQIHQMVTKT---VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
              + DL  G  +H +V +    ++PDV +  AL+TMYA+CGA+  AR IF+ M   ++V
Sbjct: 325 CGSLGDLERGKWVHGLVRERWDRLVPDVLLLTALLTMYAKCGAMETAREIFDSMSE-RSV 383

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
            SWN+MI G   HG + +ALELF  M      P   TFI VLS+CAH GLV EG   F  
Sbjct: 384 PSWNSMIIGYGLHGQSEKALELFLEMEKSGPRPNETTFICVLSSCAHGGLVLEGWWCFDR 443

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE 516
           MV  YG EP+ EHF  ++D++GR G L+D+ +LI+ +  +   A+WG ++ A +  NN +
Sbjct: 444 MVRFYGFEPKAEHFGCMMDLLGRAGLLKDSENLIQNLQGKASPALWGIMMSASQTQNNYK 503

Query: 517 LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           L +   + L++++P    PY+LL N+YA  GRW D  +VR +MK N  +K  G S +  S
Sbjct: 504 LGEFVGKKLIEMKPAEFGPYLLLSNIYASEGRWGDVEKVREVMKENGAEKYVGLSLIGSS 563



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 162/313 (51%), Gaps = 44/313 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++S Y+     + AR+L  ++P+ D V+WN ++   +    SG L  AR LFD MP RD 
Sbjct: 129 LLSIYLSLGAASSARRLIADIPRPDTVTWNTLLRACLR---SGLLPSARRLFDQMPHRDL 185

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG-DVANAIEFFDRMPG 119
           V++N+++S YA  G+M  A RLF+ MP R+VV+WN M++G+ + G D+A+A   FD MP 
Sbjct: 186 VSYNSMLSSYAAVGDMAGAGRLFDEMPERDVVTWNTMLAGYARGGADMASARAVFDAMPE 245

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           RD  S ++++ G  Q G++  A  +      R         ++N ++  Y +R    E  
Sbjct: 246 RDVVSWNSMLDGYAQAGDVVMAWAMFDGMPRRSAA------SWNVVLALYARRKDWRECL 299

Query: 180 KLFDKIPV----------------------NCDRGE---GNVRFK-----RNIVSWNSMI 209
           +LFD +                        + +RG+   G VR +      +++   +++
Sbjct: 300 RLFDAMMAVGVSVPNEKTFVSVLTACGSLGDLERGKWVHGLVRERWDRLVPDVLLLTALL 359

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTL 265
             YAK G + +AREIF+ M ER   SWN+MI GY      E+A  LF++M    P P+  
Sbjct: 360 TMYAKCGAMETAREIFDSMSERSVPSWNSMIIGYGLHGQSEKALELFLEMEKSGPRPNET 419

Query: 266 TWNAMVSGYAQIG 278
           T+  ++S  A  G
Sbjct: 420 TFICVLSSCAHGG 432



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 160/325 (49%), Gaps = 41/325 (12%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N ++S Y+S    G    AR L   +P  D VTWNT++    ++G +  A RLF+ MP R
Sbjct: 127 NSLLSIYLSL---GAASSARRLIADIPRPDTVTWNTLLRACLRSGLLPSARRLFDQMPHR 183

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
           ++VS+N+M+S +   GD+A A   FD MP RD  + + +++G  + G    +AR +    
Sbjct: 184 DLVSYNSMLSSYAAVGDMAGAGRLFDEMPERDVVTWNTMLAGYARGGADMASARAVFDAM 243

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
              D     V ++N+++ GY Q G V  A  +FD +P            +R+  SWN ++
Sbjct: 244 PERD-----VVSWNSMLDGYAQAGDVVMAWAMFDGMP------------RRSAASWNVVL 286

Query: 210 MCYAKAGDVVSAREIFEQML-------ERDTFSWNTMISG---------YIHVLDMEEAS 253
             YA+  D      +F+ M+          TF       G         ++H L  E   
Sbjct: 287 ALYARRKDWRECLRLFDAMMAVGVSVPNEKTFVSVLTACGSLGDLERGKWVHGLVRERWD 346

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
            L      PD L   A+++ YA+ G +E A + F  M ++++ SWNSMI G   +   E 
Sbjct: 347 RLV-----PDVLLLTALLTMYAKCGAMETAREIFDSMSERSVPSWNSMIIGYGLHGQSEK 401

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILS 338
           A++LF++M+  G +P+  TF  +LS
Sbjct: 402 ALELFLEMEKSGPRPNETTFICVLS 426



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 150/334 (44%), Gaps = 48/334 (14%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           NS++  Y   G   SAR +   +   DT +WNT++   +    +  A  LF +MPH D +
Sbjct: 127 NSLLSIYLSLGAASSARRLIADIPRPDTVTWNTLLRACLRSGLLPSARRLFDQMPHRDLV 186

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG-CETNKDYEGAIKLFIQMQVE 324
           ++N+M+S YA +G++  A   F  MP++++V+WN+M+AG      D   A  +F  M   
Sbjct: 187 SYNSMLSSYAAVGDMAGAGRLFDEMPERDVVTWNTMLAGYARGGADMASARAVFDAM--- 243

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEAR 384
              P+R                                DV   N+++  YA+ G +V A 
Sbjct: 244 ---PER--------------------------------DVVSWNSMLDGYAQAGDVVMAW 268

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV-LPTYITFISVLSACAH 443
            +F+ M   ++  SWN ++   A      E L LF +M +  V +P   TF+SVL+AC  
Sbjct: 269 AMFDGMP-RRSAASWNVVLALYARRKDWRECLRLFDAMMAVGVSVPNEKTFVSVLTACGS 327

Query: 444 AGLVEEGRQHFKSMVNEY--GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
            G +E G+     +V E    + P +    +L+ +  + G +E A ++   M  E     
Sbjct: 328 LGDLERGKW-VHGLVRERWDRLVPDVLLLTALLTMYAKCGAMETAREIFDSMS-ERSVPS 385

Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           W +++    +H   E    A E  +++E     P
Sbjct: 386 WNSMIIGYGLHGQSE---KALELFLEMEKSGPRP 416


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 210/628 (33%), Positives = 322/628 (51%), Gaps = 78/628 (12%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS---------------------- 39
           + G+     M  A +LFDEM + D   WNVMI G+ S                       
Sbjct: 67  LRGFADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADS 126

Query: 40  ----------RGSGFLEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEALRLFNS 85
                      G   LEE + +  ++ +     D    N++IS Y K G   +A ++F  
Sbjct: 127 FTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEE 186

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSAL--VSGLIQNGE 137
           MP R++VSWN+MISG+L   D   ++  F  M      P R S ++SAL   S +     
Sbjct: 187 MPERDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFS-TMSALGACSHVYSPNM 245

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
             E     V+  SR + G+ +V    +++  Y + G V  A ++F  I            
Sbjct: 246 GKELHCHAVR--SRIETGDVMV--MTSILDMYSKYGEVSYAERIFKCI------------ 289

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
            +RNIV+WN +I CYA+   V  A   F++M E+     N +    I ++++  A  +  
Sbjct: 290 IQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSEQ-----NGLQPDVITLINLLPACAILE 344

Query: 258 -KMPH---------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
            +  H         P  +   A++  Y + G L+ A   F R+ +KNL+SWNS+IA    
Sbjct: 345 GRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQ 404

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPI 366
           N     A++LF ++      PD  T +SIL   +  + L  G QIH  + K+    +  I
Sbjct: 405 NGKNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHAYIVKSRYGSNTII 464

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            N+L+ MYA CG + +AR  F  + LLK+VVSWN++I   A HGF   ++ LF  M + K
Sbjct: 465 LNSLVHMYAMCGDLEDARKCFNHV-LLKDVVSWNSIIMAYAVHGFGRISVCLFSEMIASK 523

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           V P   TF S+L+AC+ +G+V+EG ++F+SM  EYGI+P IEH+  ++D++GR G    A
Sbjct: 524 VDPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGYMLDLIGRTGNFSSA 583

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
              I+ MPF P   +WG+LL A R HN++ +A+ AAE + K+E +N+  YVLL NMYA+ 
Sbjct: 584 KRFIREMPFLPTARIWGSLLNASRNHNDITVAEFAAEQIFKMEHDNTGCYVLLLNMYAEA 643

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            RW+D N ++LLM+S  I + +  S V+
Sbjct: 644 RRWEDVNRIKLLMESKGISRTSSRSTVE 671



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 210/471 (44%), Gaps = 78/471 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG---SGFLEEARYLFDIMPE 57
           +IS Y+K      A K+F+EMP+RD+VSWN MISGY++      S  L +    F   P+
Sbjct: 167 LISLYMKLGCSWDAEKVFEEMPERDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPD 226

Query: 58  R----------------------------------DCVTWNTVISGYAKTGEMEEALRLF 83
           R                                  D +   +++  Y+K GE+  A R+F
Sbjct: 227 RFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIF 286

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
             +  RN+V+WN +I  + +N  V +A   F +M  ++      L   +I    L  A  
Sbjct: 287 KCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSEQN-----GLQPDVITLINLLPACA 341

Query: 144 VLVKCGSRCDGGEDLVRAY-------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
           +L     R   G  + R +         LI  YG+ G+++ A  +FD+I           
Sbjct: 342 IL---EGRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIA---------- 388

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA 252
             ++N++SWNS+I  Y + G   SA E+F+++    L  D+ +  +++  Y   L + E 
Sbjct: 389 --EKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSLSEG 446

Query: 253 SNL---FVKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             +    VK  +  +T+  N++V  YA  G+LE A   F  +  K++VSWNS+I     +
Sbjct: 447 RQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVH 506

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKT--VIPDV 364
                ++ LF +M      P++ TF+S+L+    SG+VD   G +  + + +   + P +
Sbjct: 507 GFGRISVCLFSEMIASKVDPNKSTFASLLAACSISGMVD--EGWEYFESMKREYGIDPGI 564

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
                ++ +  R G    A+    EM  L     W +++    +H   T A
Sbjct: 565 EHYGYMLDLIGRTGNFSSAKRFIREMPFLPTARIWGSLLNASRNHNDITVA 615


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 193/632 (30%), Positives = 325/632 (51%), Gaps = 78/632 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG------------------- 41
           +++ Y K + + +A+ +F+ +  +DVVSWN +I+GY S  G                   
Sbjct: 46  LVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGY-SQHGPSGSSHVMELFQRMRAENT 104

Query: 42  -------SGFLEEARYLFDIM-------------PERDCVTWNTVISGYAKTGEMEEALR 81
                  +G    A  L D                 RD    +++++ Y K G   EA +
Sbjct: 105 APNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARK 164

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD--------SASLSAL-VSGL 132
           +F++MP RN VSW  MISG+      A A+  F  M   +        ++ LSAL +  L
Sbjct: 165 VFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPEL 224

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           + NG+        + C +  +G   +V   N L+  Y + G +++A + F+         
Sbjct: 225 VNNGKQ-------IHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFE--------- 268

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMI---SGYIH 245
                  +N ++W++MI  YA++GD   A ++F  M    +    F++  +I   S    
Sbjct: 269 ---TSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGA 325

Query: 246 VLDMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
             + ++  +  +K+     +    A+V  YA+  ++  A   F  + + ++V W SMI G
Sbjct: 326 AWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGG 385

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-D 363
              N + E A+ L+ +M++EG  P+  T +S+L   S +  L  G QIH    K     +
Sbjct: 386 YVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLE 445

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           VPI +AL TMYA+CG + +  ++F  M   ++V+SWNAMI G + +G   EALELF+ M+
Sbjct: 446 VPIGSALSTMYAKCGCLKDGTLVFRRMPA-RDVISWNAMISGLSQNGCGKEALELFEEMQ 504

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
                P Y+TF+++LSAC+H GLVE G  +F+ M +E+G++PR+EH+A +VDI+ R G+L
Sbjct: 505 LEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKL 564

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
           ++A++  +    +    +W  +LGACR + N EL   A E LM++  + S+ YVLL ++Y
Sbjct: 565 KEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIY 624

Query: 544 ADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           + +GRW+D   VR +MK   + K  G SW++ 
Sbjct: 625 SALGRWEDVERVRRMMKLRGVSKEPGCSWIEL 656



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 140/495 (28%), Positives = 244/495 (49%), Gaps = 36/495 (7%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG--DVANAIEFFDRMPGRD 121
           N++++ YAK   + EA  +F  +  ++VVSWN +I+G+ Q+G    ++ +E F RM   +
Sbjct: 44  NSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAEN 103

Query: 122 SASLSALVSGLIQNGE-LDEAA--RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
           +A  +   +G+      L +AA  R+      + D   D V   ++L+  Y + G   EA
Sbjct: 104 TAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRD-VFVGSSLMNMYCKAGLTPEA 162

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT 238
           RK+FD +P            +RN VSW +MI  YA       A  +F  M   +      
Sbjct: 163 RKVFDTMP------------ERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEF 210

Query: 239 MISGYIHVLDMEEASN-------LFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRM 290
           + +  +  L + E  N       + VK      ++  NA+V+ YA+ G+L+ AL  F+  
Sbjct: 211 VFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETS 270

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
             KN ++W++MI G   + D + A+KLF  M + G +P   TF  +++  S +     G 
Sbjct: 271 SDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGK 330

Query: 351 QIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           Q+H  + K      + +  AL+ MYA+C +IV+AR  F+ ++   ++V W +MIGG   +
Sbjct: 331 QVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQ-EPDIVLWTSMIGGYVQN 389

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIE 468
           G   +AL L+  M    +LP  +T  SVL AC+    +E+G+Q H +++   +G+E  I 
Sbjct: 390 GENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIG 449

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528
             ++L  +  + G L+D   + + MP   D   W A++     +      + A E   ++
Sbjct: 450 --SALSTMYAKCGCLKDGTLVFRRMPAR-DVISWNAMISGLSQNG---CGKEALELFEEM 503

Query: 529 EPENSTP-YVLLYNM 542
           + E + P YV   N+
Sbjct: 504 QLEGTKPDYVTFVNI 518



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 20/220 (9%)

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIF 387
           P   +F + L   +    L  G  +H  + K+    V I N+L+ +YA+C  + EA+ +F
Sbjct: 4   PSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVF 63

Query: 388 EEMKLLKNVVSWNAMIGGCASHG--FATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           E ++  K+VVSWN +I G + HG   ++  +ELF+ MR+    P   TF  V +A +   
Sbjct: 64  ERIQ-NKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLV 122

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHF--ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
               GR      +    ++   + F  +SL+++  + G   +A  +   MP E +   W 
Sbjct: 123 DAAGGRLAHAVAIK---MDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMP-ERNSVSWA 178

Query: 504 ALLGACRVHNNVELAQVAAEA-----LMKVEPENSTPYVL 538
            ++      +     ++AAEA     LM+ E E    +V 
Sbjct: 179 TMI------SGYASQKLAAEALGLFRLMRREEEGENEFVF 212



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 105/254 (41%), Gaps = 32/254 (12%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----PERDC 60
           Y K   +     +F  MP RDV+SWN MISG +S  G G  +EA  LF+ M     + D 
Sbjct: 456 YAKCGCLKDGTLVFRRMPARDVISWNAMISG-LSQNGCG--KEALELFEEMQLEGTKPDY 512

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAIEFFD 115
           VT+  ++S  +  G +E     F  M         V  +  M+    + G +  AIEF +
Sbjct: 513 VTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTE 572

Query: 116 RMPGRDSASLSALVSGLIQNGELDE----AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
                    L  ++ G  +N    E    A   L++ GS+         AY  L   Y  
Sbjct: 573 SATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESS------AYVLLSSIYSA 626

Query: 172 RGR---VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV-VSAREIFEQ 227
            GR   VE  R++     V+ + G   +  K  +  +      + + GD+ V  R++ +Q
Sbjct: 627 LGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELRQLSKQ 686

Query: 228 MLER------DTFS 235
           M +       D+FS
Sbjct: 687 MKDEGYEPATDSFS 700


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 193/603 (32%), Positives = 320/603 (53%), Gaps = 57/603 (9%)

Query: 11  MAKARKLFD-----EMPQRDVVSWNVMISGYISSR------GSGFLEEARYLFDIMPERD 59
           + K RKL++     ++  + VV+  V +  ++ SR       +G +E+AR +FD M ER+
Sbjct: 17  LQKCRKLYNLRLGFQVHAQLVVN-GVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERN 75

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSM------PARNVVSWNAMISGFLQNGDVANAIEF 113
             +W  ++  Y   G+ EE ++LF  M      P   V          L+N  V   +  
Sbjct: 76  VFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV-- 133

Query: 114 FDRMPG----RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
           +D M       +S    +++   I+ G +D A R   +   +       V  +N ++ GY
Sbjct: 134 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK------DVFMWNIMVSGY 187

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE--- 226
             +G  ++A  +F K+ +     EG    K N ++  S +        +   REI     
Sbjct: 188 TSKGEFKKALNVFRKMVL-----EG---VKPNSITIASAVSACTNLSLLRHGREIHGYCI 239

Query: 227 --QMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAM--VSGYAQIGNLEL 282
             + L+ D    N+++  Y     +E A   F  +   D ++WNAM  V+G+ Q G+ + 
Sbjct: 240 KVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKA 299

Query: 283 ALDFFKRM----------PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
           AL+FF+RM            +++V WNS+I+ C  +     A+ L  +M +   + +  T
Sbjct: 300 ALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVT 359

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMK 391
             S L   S +  L  G +IHQ + +  +     I N+LI MY RCG+I ++R IF+ M 
Sbjct: 360 MVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP 419

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             +++VSWN MI     HGF  +A+ LF+  R+  + P +ITF ++LSAC+H+GL+EEG 
Sbjct: 420 Q-RDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGW 478

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
           ++FK M  EY ++P +E +A +VD++ R G+  + ++ I+ MPFEP+ AVWG+LLGACR+
Sbjct: 479 KYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRI 538

Query: 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           H N +LA+ AA  L ++EP++S  YVL+ N+Y+  GRW+DA ++R LMK   + KP G S
Sbjct: 539 HCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCS 598

Query: 572 WVD 574
           W++
Sbjct: 599 WIE 601



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 162/405 (40%), Gaps = 122/405 (30%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP-------- 56
           ++K   M  AR+ F+E+  +DV  WN+M+SGY S    G  ++A  +F  M         
Sbjct: 156 FIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS---KGEFKKALNVFRKMVLEGVKPNS 212

Query: 57  --------------------------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                                           + D +  N+++  YAK   +E A R F 
Sbjct: 213 ITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFG 272

Query: 85  SMPARNVVSWNAM--ISGFLQNGDVANAIEFFDRM----------PGRDSASLSALVSGL 132
            +   ++VSWNAM  ++GF Q GD   A+EFF RM            RD    ++++S  
Sbjct: 273 MIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISAC 332

Query: 133 IQNGE----LD----------------------------------EAARVLVKCG-SRCD 153
            Q+G     LD                                  E  + +++CG   C+
Sbjct: 333 AQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCN 392

Query: 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
                    N+LI  YG+ G ++++R++FD +P            +R++VSWN MI  Y 
Sbjct: 393 ------FILNSLIDMYGRCGSIQKSRRIFDLMP------------QRDLVSWNVMISVYG 434

Query: 214 KAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDT 264
             G  + A  +F+Q     L+ +  ++  ++S   H   +EE    F  M       P  
Sbjct: 435 MHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAV 494

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETN 308
             +  MV   ++ G     L+F ++MP + N   W S++  C  +
Sbjct: 495 EQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIH 539



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 26/196 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
           +I  Y +   + K+R++FD MPQRD+VSWNVMIS Y      GF  +A  LF       +
Sbjct: 398 LIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVY---GMHGFGMDAVNLFQQFRTMGL 454

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVAN 109
            P    +T+  ++S  + +G +EE  + F  M         V  +  M+    + G    
Sbjct: 455 KPNH--ITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNE 512

Query: 110 AIEFFDRMPGRDSASLSALVSGLIQ---NGELDE-AARVLVKCGSRCDGGEDLVRAYNTL 165
            +EF ++MP   +A++   + G  +   N +L E AAR L +   +  G       Y  +
Sbjct: 513 TLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGN------YVLM 566

Query: 166 IVGYGQRGRVEEARKL 181
              Y   GR E+A K+
Sbjct: 567 ANIYSAAGRWEDAAKI 582


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 190/549 (34%), Positives = 297/549 (54%), Gaps = 50/549 (9%)

Query: 66  VISGYA-KTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----- 119
           VI  Y+  +  + +A  +FN +    +V WN MI G  Q+     AI  + RM       
Sbjct: 55  VIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITG 114

Query: 120 ---------RDSASLSALVSGL---IQNGELDEAARVLVK---------CGS------RC 152
                    +  A +S +VSG    +   +L   + + V          CG         
Sbjct: 115 NNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMF 174

Query: 153 DG--GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
           DG    DLV ++NTLI GY Q  + +E  +LFD +             K + V+   +I+
Sbjct: 175 DGMLDRDLV-SWNTLICGYSQYNKYKEVLRLFDAMTA--------ANIKADAVTMVKIIL 225

Query: 211 CYAKAGDVVSA----REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT 266
             +  GD   A    + I E  LE D +  NT+I  Y      E A  +F +M   + ++
Sbjct: 226 ACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVS 285

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
           WNA+V G+A++GNL  A   F  MP+++++SW SMI G      +  A+KLF +M     
Sbjct: 286 WNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKV 345

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARI 385
           KPD+ T +S+LS  + +  L +G  +H  + +  V  D+ + N+LI MY +CG + +A  
Sbjct: 346 KPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALE 405

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F  MK  K+ VSW ++I G A +GFA  AL+LF  M    V PT+ TF+ +L ACAHAG
Sbjct: 406 VFHRMKD-KDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAG 464

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           LV +G ++F+SM + +G+ P ++H+  +VD++ R G ++ A + IK MP  PD  VW  L
Sbjct: 465 LVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRIL 524

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           L AC++H NV LA++A + L++++P +S  YVLL N YA V RWDDA ++R LM+ ++++
Sbjct: 525 LSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQ 584

Query: 566 KPTGYSWVD 574
           KP+G S ++
Sbjct: 585 KPSGSSSIE 593



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 194/427 (45%), Gaps = 95/427 (22%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +I  Y      GF   A+ +FD M +RD V+WNT+I GY++  + +E LRLF++M A 
Sbjct: 155 NALIHMYAMCGQLGF---AQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAA 211

Query: 90  NV----VSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG-ELDEAARV 144
           N+    V+   +I      GD     EF D M           V  + +N  E+D     
Sbjct: 212 NIKADAVTMVKIILACSHLGD----WEFADSM-----------VKYIKENNLEID----- 251

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
                         V   NTLI  YG+R   E A+ +FD++             +RNIVS
Sbjct: 252 --------------VYLGNTLIDMYGRRSLAELAQGVFDRMR------------ERNIVS 285

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----P 260
           WN+++M +AK G++ +AR++F+ M +RD  SW +MI+GY       +A  LF +M     
Sbjct: 286 WNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKV 345

Query: 261 HPDTLT-----------------W------------------NAMVSGYAQIGNLELALD 285
            PD +T                 W                  N+++  Y + G +E AL+
Sbjct: 346 KPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALE 405

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL--SMSSGI 343
            F RM  K+ VSW S+I+G   N     A+ LF QM  EG +P   TF  IL     +G+
Sbjct: 406 VFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGL 465

Query: 344 VDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           V+  L           ++P +     ++ + +R G I +A    ++M ++ +VV W  ++
Sbjct: 466 VNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILL 525

Query: 404 GGCASHG 410
             C  HG
Sbjct: 526 SACKLHG 532



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 143/301 (47%), Gaps = 41/301 (13%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           DV   N +I  Y   R S   E A+ +FD M ER+ V+WN ++ G+AK G +  A +LF+
Sbjct: 251 DVYLGNTLIDMY--GRRS-LAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFD 307

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
           +MP R+V+SW +MI+G+ Q    ++A++ F  M       D  ++++++S     G+LD 
Sbjct: 308 NMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDV 367

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
                V    R  G +  +   N+LI  Y + G VE+A ++F ++              +
Sbjct: 368 GWA--VHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMK------------DK 413

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI--------------HV 246
           + VSW S+I   A  G   SA ++F QML       +    G +              + 
Sbjct: 414 DSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYF 473

Query: 247 LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGC 305
             ME    L   M H     +  +V   ++ GN++ A +F K+MP   ++V W  +++ C
Sbjct: 474 ESMESVHGLVPAMKH-----YGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSAC 528

Query: 306 E 306
           +
Sbjct: 529 K 529


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 199/625 (31%), Positives = 321/625 (51%), Gaps = 80/625 (12%)

Query: 7   KRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---------- 56
           K   +  AR +FD+MP +++++W+ M+S Y      G+ EEA  +F  +           
Sbjct: 96  KSDRVDNARVVFDKMPHKNLITWSSMVSMY---SQQGYSEEALMVFVDLQRKSGEHPNEF 152

Query: 57  ------------------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSM 86
                                         ++D     ++I  Y+K G +EEA  +F+ +
Sbjct: 153 VLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQL 212

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRD--SASLSALVSGLIQNGEL 138
             +  V+W  +I+G+ + G  A ++E F +M      P R   S+ LSA        G  
Sbjct: 213 SEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 272

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
              A VL +      G E  V   N LI  Y +  RV+  RKLFD++ V           
Sbjct: 273 QIHAYVLRR------GTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV----------- 315

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMIS--GYIHVLDMEEA 252
            +NI+SW +MI  Y +      A ++F +M     + D F+  ++++  G    L+    
Sbjct: 316 -KNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQ 374

Query: 253 SNLFVKMPH--PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
            + +    +   D    N ++  YA+   L  A   F  M ++N++S+N+MI G  + + 
Sbjct: 375 VHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEK 434

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNA 369
              A++LF +M+V  +KP+  TF+++++ +S +  L  G Q H  + K  +   P + NA
Sbjct: 435 LSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNA 494

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           L+ MYA+CG+I EAR +F    + ++VV WN+MI   A HG A EAL +F+ M    + P
Sbjct: 495 LVDMYAKCGSIEEARKMFNS-SIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQP 553

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
            Y+TF++VLSAC+HAG VE+G  HF SM   +GI+P  EH+A +V ++GR G+L +A + 
Sbjct: 554 NYVTFVAVLSACSHAGRVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEF 612

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
           I+ MP EP   VW +LL ACR+  NVEL + AAE  +  +P++S  Y+LL N++A  G W
Sbjct: 613 IEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMW 672

Query: 550 DDANEVRLLMKSNNIKKPTGYSWVD 574
            D  +VR  M S+ + K  G SW++
Sbjct: 673 ADVKKVRDRMDSSEVVKEPGRSWIE 697



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 161/365 (44%), Gaps = 71/365 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS------------------RGS 42
           +I  Y K   +   RKLFD+M  ++++SW  MISGY+ +                  +  
Sbjct: 293 LIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPD 352

Query: 43  GF--------------LEEAR----YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           GF              LE+ R    Y      E D    N +I  YAK+  + +A ++F+
Sbjct: 353 GFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFD 412

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            M  +NV+S+NAMI G+     ++ A+E F  M  R    +  + +AL++       L  
Sbjct: 413 VMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRH 472

Query: 141 AARV---LVKCG-SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
             +    LVK G   C          N L+  Y + G +EEARK+F            N 
Sbjct: 473 GQQFHNQLVKMGLDFCP------FVTNALVDMYAKCGSIEEARKMF------------NS 514

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSA----REIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
              R++V WNSMI  +A+ G+   A    RE+ ++ ++ +  ++  ++S   H   +E+ 
Sbjct: 515 SIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDG 574

Query: 253 SNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCET 307
            N F  MP     P T  +  +VS   + G L  A +F ++MP +   + W S+++ C  
Sbjct: 575 LNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRI 634

Query: 308 NKDYE 312
             + E
Sbjct: 635 AGNVE 639



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 102/217 (47%), Gaps = 8/217 (3%)

Query: 321 MQVEGEKPDRHTFSSILSMS-SGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGA 379
           +Q+   +P R  F+++L +S S    +H  +   Q++   +  D  + N LI + ++   
Sbjct: 40  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDR 99

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-RSFKVLPTYITFISVL 438
           +  AR++F++M   KN+++W++M+   +  G++ EAL +F  + R     P      SV+
Sbjct: 100 VDNARVVFDKMP-HKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVI 158

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
            AC   G+VE+G Q     V   G +  +    SL+D   ++G +E+A  L+     E  
Sbjct: 159 RACTQLGVVEKGAQ-LHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEA-RLVFDQLSEKT 216

Query: 499 KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
              W  ++     +     + V+ E   ++   N  P
Sbjct: 217 AVTWTTIIAG---YTKCGRSAVSLELFAQMRETNVVP 250


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 179/523 (34%), Positives = 287/523 (54%), Gaps = 28/523 (5%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----D 121
           V++ YAK  ++++A ++F+ MP R++VSWN +I+GF QNG    A+E   RM       D
Sbjct: 188 VVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPD 247

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           S +L  ++      G L    + +     R  G   LV     L   Y + G VE AR +
Sbjct: 248 SITLVTVLPAAADVGLL-MVGKSIHGYAIRA-GFAKLVNISTALADMYSKCGSVETARLI 305

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           FD +             ++ +VSWNSM+  Y + G+   A  +FE+MLE         I 
Sbjct: 306 FDGMD------------QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353

Query: 242 GYIHVL----DMEEAS--NLFVKMPH--PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
             +H      D+E     + FV   +   D    N+++S Y++   +++A D F  +  +
Sbjct: 354 EALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGR 413

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
             VSWN+MI G   N     A+  F +M+  G KPD  T  S++   + +        IH
Sbjct: 414 THVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIH 473

Query: 354 QMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
            ++ ++ +  ++ +  AL+ MY++CGAI  AR +F+ M   ++V++WNAMI G  +HG  
Sbjct: 474 GLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD-MISDRHVITWNAMIDGYGTHGLG 532

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
             AL+LF  M+   V P  IT++SV+SAC+H+GLV+EG +HFKSM  +YG+EP ++H+ +
Sbjct: 533 RAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGA 592

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           +VD++GR GR+++A D I+ MP  P   V+GA  GAC++H N+E+ + AA+ L ++ P+ 
Sbjct: 593 MVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDE 652

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
              +VLL N+YA   +W    EVR  M+   +KK  G S V+ 
Sbjct: 653 GGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVEL 695



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 214/471 (45%), Gaps = 88/471 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +++ Y K R++  A K+FD MP+RD+VSWN +I+G+     +GF ++A  L   M +   
Sbjct: 188 VVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGF---SQNGFAKKALELVLRMQDEGQ 244

Query: 59  --DCVTWNTV---------------ISGYA--------------------KTGEMEEALR 81
             D +T  TV               I GYA                    K G +E A  
Sbjct: 245 RPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARL 304

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRDSASLSAL--VSGLIQNGE 137
           +F+ M  + VVSWN+M+ G++QNG+   AI  F++M   G D   ++ +  +      G+
Sbjct: 305 IFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGD 364

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           L E  + + K   + + G D +   N+LI  Y +  RV+ A  +F+ +            
Sbjct: 365 L-ERGKFVHKFVDQLNLGSD-ISVMNSLISMYSKCKRVDIASDIFNNLN----------- 411

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMI-----------SG 242
             R  VSWN+MI+ YA+ G V  A   F +M    ++ D+F+  ++I           + 
Sbjct: 412 -GRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAK 470

Query: 243 YIHVLDMEEA--SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           +IH L +      N+FV           A+V  Y++ G + +A   F  +  +++++WN+
Sbjct: 471 WIHGLIIRSCLDKNIFVT---------TALVDMYSKCGAIHMARKLFDMISDRHVITWNA 521

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM--SSGIVDLHLGMQIHQMVTK 358
           MI G  T+     A+ LF +M+    +P+  T+ S++S    SG+VD  L          
Sbjct: 522 MIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDY 581

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            + P +    A++ +  R G I EA    E M +   +  + A  G C  H
Sbjct: 582 GLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIH 632



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 123/483 (25%), Positives = 210/483 (43%), Gaps = 61/483 (12%)

Query: 97  MISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
           ++S F + G +  A   F+ +  +  A    ++ G  +N  L+ A   L  C  R D  +
Sbjct: 87  LVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFL--CRMRYDDVK 144

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
            +V  +  L+   G    ++  +++  ++  N         F  N+ +   ++  YAK  
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITN--------SFAANVFAMTGVVNMYAKCR 196

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW----- 267
            +  A ++F++M ERD  SWNT+I+G+      ++A  L ++M      PD++T      
Sbjct: 197 QIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLP 256

Query: 268 ------------------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
                                          A+   Y++ G++E A   F  M QK +VS
Sbjct: 257 AAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVS 316

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WNSM+ G   N + E AI +F +M  EG  P   T    L   + + DL  G  +H+ V 
Sbjct: 317 WNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVD 376

Query: 358 KTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           +  +  D+ + N+LI+MY++C  +  A  IF  +   +  VSWNAMI G A +G  +EAL
Sbjct: 377 QLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLN-GRTHVSWNAMILGYAQNGRVSEAL 435

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
             F  M+S  + P   T +SV+ A A   +    +     ++    ++  I    +LVD+
Sbjct: 436 NCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKW-IHGLIIRSCLDKNIFVTTALVDM 494

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK-----VEPE 531
             + G +  A  L   M  +     W A++     H    L + A +   K     VEP 
Sbjct: 495 YSKCGAIHMARKLFD-MISDRHVITWNAMIDGYGTHG---LGRAALDLFDKMKKGAVEPN 550

Query: 532 NST 534
           + T
Sbjct: 551 DIT 553



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 156/371 (42%), Gaps = 74/371 (19%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER------ 58
           Y K   +  AR +FD M Q+ VVSWN M+ GY+ +   G  E+A  +F+ M E       
Sbjct: 293 YSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQN---GEPEKAIAVFEKMLEEGIDPTG 349

Query: 59  ---------------------------------DCVTWNTVISGYAKTGEMEEALRLFNS 85
                                            D    N++IS Y+K   ++ A  +FN+
Sbjct: 350 VTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNN 409

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDEA 141
           +  R  VSWNAMI G+ QNG V+ A+  F  M       DS ++ +++  L +      A
Sbjct: 410 LNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHA 469

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +       C      V     L+  Y + G +  ARKLFD I              R+
Sbjct: 470 KWIHGLIIRSCLDKNIFVT--TALVDMYSKCGAIHMARKLFDMIS------------DRH 515

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFV 257
           +++WN+MI  Y   G   +A ++F++M    +E +  ++ ++IS   H   ++E    F 
Sbjct: 516 VITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFK 575

Query: 258 KMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDY 311
            M       P    + AMV    + G ++ A DF + MP    +  + +    C+ +K+ 
Sbjct: 576 SMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNI 635

Query: 312 E----GAIKLF 318
           E     A KLF
Sbjct: 636 EVGEKAAKKLF 646


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 194/623 (31%), Positives = 323/623 (51%), Gaps = 65/623 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           +I  Y K  ++  AR +FD++ ++  V+W  +I+GY                        
Sbjct: 78  LIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPD 137

Query: 37  ---ISSRGSG-----FLEEAR----YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
              +SS  S      FLE  +    Y+     E D    N +I  Y K   ++   +LF+
Sbjct: 138 RYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFD 197

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDE 140
            M  +N++SW  MISG++QN     A++ F  M       D  + +++++       L++
Sbjct: 198 QMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQ 257

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +V            + V+  N LI  Y +   + +A+K+FD            V  ++
Sbjct: 258 GRQVHAYTIKANLESNEFVK--NGLIDMYAKSNLLXDAKKVFD------------VMAEQ 303

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERD------TFSWNTMISGYIHVLDM-EEAS 253
           N++S+N+MI  Y+    +  A E+F +M  R       TF     +S  +  L++ ++  
Sbjct: 304 NVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIH 363

Query: 254 NLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
            L +K     D    +A++  Y++   ++ A   F+ M +K++V WN+M  G   + + E
Sbjct: 364 GLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENE 423

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALI 371
            A+KL+  +Q   +KP+  TF+++++ +S +  L  G Q H  + K  +   P + NAL+
Sbjct: 424 EALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALV 483

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            MYA+CG+I EAR +F    + ++VV WN+MI   A HG A EAL +F+ M    + P Y
Sbjct: 484 DMYAKCGSIEEARKMFNS-SIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNY 542

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           +TF++VLSAC+HAG VE+G  HF SM   +GI+P  EH+A +V ++GR G+L +A + I+
Sbjct: 543 VTFVAVLSACSHAGXVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIE 601

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
            MP EP   VW +LL ACR+  NVEL + AAE  +  +P++S  Y+LL N++A  G W D
Sbjct: 602 KMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWAD 661

Query: 552 ANEVRLLMKSNNIKKPTGYSWVD 574
             +VR  M S+ + K  G SW++
Sbjct: 662 VKKVRDRMDSSEVVKEPGRSWIE 684



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 137/516 (26%), Positives = 252/516 (48%), Gaps = 45/516 (8%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           ++D     ++I  Y+K G++E A  +F+ +  +  V+W  +I+G+ + G    ++E F +
Sbjct: 69  DQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQ 128

Query: 117 M------PGRD--SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           M      P R   S+ LSA        G     A VL +      G E  V   N LI  
Sbjct: 129 MRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRR------GTEMDVSVVNVLIDF 182

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y +  RV+  RKLFD++ V            +NI+SW +MI  Y +      A ++F +M
Sbjct: 183 YTKCNRVKAGRKLFDQMVV------------KNIISWTTMISGYMQNSFDWEAMKLFGEM 230

Query: 229 ----LERDTFSWNTMIS--GYIHVLDMEEASNLFVKMPHPDT--LTWNAMVSGYAQIGNL 280
                + D F+  ++++  G +  L+     + +    + ++     N ++  YA+   L
Sbjct: 231 NRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLL 290

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
             A   F  M ++N++S+N+MI G  + +    A++LF +M+V    P   TF S+L +S
Sbjct: 291 XDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVS 350

Query: 341 SGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           + +  L L  QIH ++ K  V  D+   +ALI +Y++C  + +AR +FEEM   K++V W
Sbjct: 351 ASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMN-EKDIVVW 409

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           NAM  G   H    EAL+L+ +++  +  P   TF ++++A ++   +  G+Q F + + 
Sbjct: 410 NAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQ-FHNQLV 468

Query: 460 EYGIE--PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517
           + G++  P + +  +LVD+  + G +E+A  +     +  D   W +++     H   E 
Sbjct: 469 KMGLDFCPFVTN--ALVDMYAKCGSIEEARKMFNSSIWR-DVVCWNSMISTHAQHGEAEE 525

Query: 518 AQVAAEALMK--VEPENSTPYVLLYNMYADVGRWDD 551
           A      +MK  ++P N   +V + +  +  G  +D
Sbjct: 526 ALGMFREMMKEGIQP-NYVTFVAVLSACSHAGXVED 560



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 173/356 (48%), Gaps = 45/356 (12%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F +++    S+I  Y+K GB+  AR +F+Q+LE+   +W T+I+GY        +  LF 
Sbjct: 68  FDQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFA 127

Query: 258 KMPH----PDTLTWNAMVSGYAQIGNLE----------------------LALDF----- 286
           +M      PD    ++++S  + +  LE                      + +DF     
Sbjct: 128 QMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCN 187

Query: 287 --------FKRMPQKNLVSWNSMIAGCETNK-DYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
                   F +M  KN++SW +MI+G   N  D+E A+KLF +M   G KPD    +S+L
Sbjct: 188 RVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWE-AMKLFGEMNRLGWKPDGFACTSVL 246

Query: 338 SMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
           +    +  L  G Q+H    K  +  +  + N LI MYA+   + +A+ +F+ M   +NV
Sbjct: 247 TSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMA-EQNV 305

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
           +S+NAMI G +S    +EALELF  MR     P+ +TF+S+L   A    +E  +Q    
Sbjct: 306 ISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQ-IHG 364

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           ++ + G+   +   ++L+D+  +   ++DA  + + M  E D  VW A+      H
Sbjct: 365 LIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMN-EKDIVVWNAMFFGYTQH 419



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 10/201 (4%)

Query: 301 MIAGCETNKDYEG------AIKLFIQMQVE-GEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           M  G +  KD E       A+ +F+ +Q + GE P+    +S++   + +  +  G Q+H
Sbjct: 1   MATGMQKTKDMEDEGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLH 60

Query: 354 QMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
             V ++    DV +  +LI  Y++ G I  AR++F+++ L K  V+W  +I G    G +
Sbjct: 61  GFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVFDQL-LEKTAVTWTTIIAGYTKCGRS 119

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
             +LELF  MR   V+P      SVLSAC+    +E G+Q   + V   G E  +     
Sbjct: 120 XVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQ-IHAYVLRRGTEMDVSVVNV 178

Query: 473 LVDIVGRHGRLEDAMDLIKGM 493
           L+D   +  R++    L   M
Sbjct: 179 LIDFYTKCNRVKAGRKLFDQM 199


>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
          Length = 570

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 181/511 (35%), Positives = 274/511 (53%), Gaps = 53/511 (10%)

Query: 69  GYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSAL 128
           G+AK G M+    L  ++   ++   N +I  +++   +  A + FDRMP RDS S    
Sbjct: 99  GFAKEG-MQIHGFLTKTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVS---- 153

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
                                            YN++I GY + G +E AR+LFD +P  
Sbjct: 154 ---------------------------------YNSMIDGYVKCGLIESARELFDLMP-- 178

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDTFSWNTMISGYIHVL 247
                   + K+N++SWNSMI  YA+  D V  A ++F +M E+D  SWN++I GY+   
Sbjct: 179 --------KEKKNLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISWNSLIDGYVKHG 230

Query: 248 DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
            +E+A  LF  MP  D +TW  M+ GYA++G +  A   F  MP +++V++NSM+ G   
Sbjct: 231 RIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQ 290

Query: 308 NKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVP 365
           NK +  A+++F  M+ E    PD  T   +LS  + +  L   + IH  +V K  + D  
Sbjct: 291 NKYHMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLDGK 350

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           +  ALI MY++CG+I +A  +FE ++  K++  WNAMIGG A HG    A ++   +   
Sbjct: 351 LGVALIDMYSKCGSIQQAMAVFEGIEN-KSIDHWNAMIGGLAVHGLGEAAFDMLMEIEKR 409

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            + P YITF+ VL+AC+H+GLV+EG   F+ M  ++ IEPR++H+  +VD++ R G +E 
Sbjct: 410 FIKPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLARSGSIEL 469

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ-VAAEALMKVEPENSTPYVLLYNMYA 544
           A  LI  MP EP+  +W   L AC  H   E  + V AE L+     N + YVLL NMYA
Sbjct: 470 AKHLISEMPIEPNDVIWRTFLNACSHHKEFETRELVVAENLILQAGYNPSSYVLLSNMYA 529

Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
               W+D   VR +MK   I+K  G SW++ 
Sbjct: 530 SFEMWEDVRRVRTMMKERKIEKVPGCSWIEL 560



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 203/407 (49%), Gaps = 36/407 (8%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+   N +I  YI     G+   AR +FD MP+RD V++N++I GY K G +E A  LF+
Sbjct: 119 DLFLQNCLIGLYIKCSCLGY---ARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFD 175

Query: 85  SMP--ARNVVSWNAMISGFLQNGD-VANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
            MP   +N++SWN+MI G+ Q  D V  A + F  MP +D  S ++L+ G +++G + E 
Sbjct: 176 LMPKEKKNLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISWNSLIDGYVKHGRI-ED 234

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
           A+ L     R D     V  + T+I GY + G V +A+ LFD +P             R+
Sbjct: 235 AKGLFDVMPRRD-----VVTWATMIDGYAKLGFVHKAKSLFDVMP------------HRD 277

Query: 202 IVSWNSMIMCYAKAGDVVSAREIF-----EQMLERDTFSWNTMISGYIHVLDMEEASNLF 256
           +V++NSM+  Y +    + A E+F     E  L  D  +   ++S    +  + +A ++ 
Sbjct: 278 VVAYNSMMGGYVQNKYHMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIH 337

Query: 257 VKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           + +       D     A++  Y++ G+++ A+  F+ +  K++  WN+MI G   +   E
Sbjct: 338 LYIVEKRFLLDGKLGVALIDMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGLGE 397

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNAL 370
            A  + ++++    KPD  TF  +L+  S    +  G+   +++ +   + P +     +
Sbjct: 398 AAFDMLMEIEKRFIKPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 457

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG-FATEAL 416
           + + AR G+I  A+ +  EM +  N V W   +  C+ H  F T  L
Sbjct: 458 VDLLARSGSIELAKHLISEMPIEPNDVIWRTFLNACSHHKEFETREL 504



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 164/361 (45%), Gaps = 66/361 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQ--RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           MI GYVK   +  AR+LFD MP+  ++++SWN MI GY + R  G ++ A  LF  MPE+
Sbjct: 157 MIDGYVKCGLIESARELFDLMPKEKKNLISWNSMIGGY-AQREDG-VDIASKLFAEMPEK 214

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D ++WN++I GY K G +E+A  LF+ MP R+VV+W  MI G+ + G V  A   FD MP
Sbjct: 215 DLISWNSLIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMP 274

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV---GYGQRGRV 175
            RD  + ++++ G +QN    EA  V            D      TL++      Q GR+
Sbjct: 275 HRDVVAYNSMMGGYVQNKYHMEALEVFYDMEKESHLSPD----ETTLVIVLSAIAQLGRL 330

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
            +A  +   I           RF  +     ++I  Y+K G +  A  +FE +  +    
Sbjct: 331 SKAVDIHLYIV--------EKRFLLDGKLGVALIDMYSKCGSIQQAMAVFEGIENKSIDH 382

Query: 236 WNTMISGY-IHVLD------MEEASNLFVKMPHPDTLT---------------------- 266
           WN MI G  +H L       + E    F+K   PD +T                      
Sbjct: 383 WNAMIGGLAVHGLGEAAFDMLMEIEKRFIK---PDYITFVGVLNACSHSGLVKEGLLCFE 439

Query: 267 --------------WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDY 311
                         +  MV   A+ G++ELA      MP + N V W + +  C  +K++
Sbjct: 440 LMRRKHKIEPRLQHYGCMVDLLARSGSIELAKHLISEMPIEPNDVIWRTFLNACSHHKEF 499

Query: 312 E 312
           E
Sbjct: 500 E 500



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 11/211 (5%)

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKP-DRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           WN++I       D   A+ L   M +E   P D+ + S +    S +     GMQIH  +
Sbjct: 53  WNAVIKSHSHGVDPRQALFLLCSM-IENNVPVDKFSLSLVTKACSRLGFAKEGMQIHGFL 111

Query: 357 TKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
           TKTVI  D+ + N LI +Y +C  +  AR +F+ M   ++ VS+N+MI G    G    A
Sbjct: 112 TKTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMP-QRDSVSYNSMIDGYVKCGLIESA 170

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
            ELF  M   K     I++ S++   A     E+G      +  E   E  +  + SL+D
Sbjct: 171 RELFDLMPKEK--KNLISWNSMIGGYAQR---EDGVDIASKLFAEMP-EKDLISWNSLID 224

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
              +HGR+EDA  L   MP   D   W  ++
Sbjct: 225 GYVKHGRIEDAKGLFDVMP-RRDVVTWATMI 254


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 183/545 (33%), Positives = 290/545 (53%), Gaps = 67/545 (12%)

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQ 134
           A+ +F ++   N + WN M+ G+  + D  +A++ +  M       +S +   L+    +
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 135 NGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
           +   +E  ++   ++K G   D     +  + +LI  Y Q GR+E+A K+FD+       
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPD-----LYVHTSLISMYAQNGRLEDAHKVFDRSS----- 128

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEE 251
                   R++VS+ ++I  YA +G++ SA+E+F+++  +D  SWN MISGY      +E
Sbjct: 129 -------HRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKE 181

Query: 252 ASNLFVKM------PHPDTL--------------------TW-------------NAMVS 272
           A  LF +M      P   T+                    +W             NA++ 
Sbjct: 182 ALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALID 241

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
            Y++ G +E A   F+ +  K++VSWN++I G      Y+ A+ LF +M   GE P+  T
Sbjct: 242 LYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 301

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTV--IPDVP-INNALITMYARCGAIVEARIIFEE 389
             SIL   + +  + +G  IH  + K +  + + P +  +LI MYA+CG I  A  +F  
Sbjct: 302 IVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNS 361

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           M L K++ SWNAMI G A HG A    +LF  MR   + P  ITF+ +LSAC+H+G ++ 
Sbjct: 362 M-LHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDL 420

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           GR  FKSM  +Y I P++EH+  ++D++G  G  ++A ++IK MP EPD  +W +LL AC
Sbjct: 421 GRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKAC 480

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
           R H N+ELA+  A  LMKVEPEN   YVLL N+YA  G WD+  +VR L+    +KK  G
Sbjct: 481 RRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPG 540

Query: 570 YSWVD 574
            S ++
Sbjct: 541 CSSIE 545



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 178/412 (43%), Gaps = 84/412 (20%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G LE+A  +FD    RD V++  +I+GYA +G +  A  +F+ +P ++VVSWNAMISG+
Sbjct: 114 NGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGY 173

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
            + G    A+E F  M              +  N   DE   V                 
Sbjct: 174 AETGSYKEALELFKEM--------------MKTNVRPDEGTMV----------------- 202

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
             T++    Q   VE  R++   I    D G     F  N+   N++I  Y+K G V +A
Sbjct: 203 --TVLSACAQSRSVELGRQVHSWID---DHG-----FGSNLKIVNALIDLYSKCGQVETA 252

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLT----------- 266
             +FE +  +D  SWNT+I GY H+   +EA  LF +M      P+ +T           
Sbjct: 253 CGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHL 312

Query: 267 -------W-------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
                  W                    +++  YA+ G++E A   F  M  K+L SWN+
Sbjct: 313 GAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNA 372

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-- 358
           MI G   +        LF +M+  G +PD  TF  +LS  S    L LG  I + +T+  
Sbjct: 373 MIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDY 432

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            + P +     +I +    G   EA+ + + M +  + V W +++  C  HG
Sbjct: 433 DITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHG 484



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 164/396 (41%), Gaps = 69/396 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           +I+GY     +  A+++FDE+P +DVVSWN MISGY     +G  +EA  LF      ++
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAE---TGSYKEALELFKEMMKTNV 194

Query: 55  MPE--------------------RDCVTW-------------NTVISGYAKTGEMEEALR 81
            P+                    R   +W             N +I  Y+K G++E A  
Sbjct: 195 RPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACG 254

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGE 137
           LF  +  ++VVSWN +I G+        A+  F  M       +  ++ +++      G 
Sbjct: 255 LFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGA 314

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           +D    + V    +     +      +LI  Y + G +E A ++F            N  
Sbjct: 315 IDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVF------------NSM 362

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
             +++ SWN+MI  +A  G   +  ++F +M    +E D  ++  ++S   H   ++   
Sbjct: 363 LHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGR 422

Query: 254 NLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCET 307
           ++F  M       P    +  M+      G  + A +  K MP + + V W S++  C  
Sbjct: 423 HIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRR 482

Query: 308 NKDYEGAIKLFIQ-MQVEGEKPDRHTFSSILSMSSG 342
           + + E A       M+VE E P  +   S +  ++G
Sbjct: 483 HGNLELAESFARNLMKVEPENPGSYVLLSNIYATAG 518



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 5/185 (2%)

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           N + WN M+ G A       AL+L+  M S  +LP   TF  +L +CA +   EEG+Q  
Sbjct: 30  NQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQ-I 88

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
              V + G EP +    SL+ +  ++GRLEDA  +        D   + AL+       N
Sbjct: 89  HGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHR-DVVSYTALITGYASSGN 147

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +  AQ   E   ++  ++   +  + + YA+ G + +A E+   M   N++   G     
Sbjct: 148 IRSAQ---EMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTV 204

Query: 575 FSPCG 579
            S C 
Sbjct: 205 LSACA 209


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 172/515 (33%), Positives = 286/515 (55%), Gaps = 42/515 (8%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           +  N +I  Y + G   EA ++F+ M  RN+ SWN M++G+ + GDV NA + FDRM  +
Sbjct: 99  IVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEK 158

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  S + +V    + G  +EA   L +   R D G +       LI+    +  ++ A++
Sbjct: 159 DVVSWNTIVLAYAKQGCFNEAIG-LYRDFRRLDMGFNAFSFAGVLILCVKLK-ELQLAKQ 216

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +  ++ V          F  N+V  +S++  YAK G++  AR +F++ML +D  +W T++
Sbjct: 217 VHGQVLV--------AGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIV 268

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           SGY    DM  AS LF +MP  + ++W+A++SGYA+      ALD+F +M +        
Sbjct: 269 SGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMK-------- 320

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
                                   G  P+++TFSS L   + I  L  G Q+H  + +T 
Sbjct: 321 -----------------------FGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTY 357

Query: 361 I-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              +  + ++LI MY++CG +  +  +F  M   ++VV WN MI   A +G   +A+++F
Sbjct: 358 FRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMF 417

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M    + P  ITFI +LSAC+H+GLV+EG + FK+M  ++G+ P  EH++ L+D++GR
Sbjct: 418 NDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGR 477

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G   + ++ ++ M  +PD  VW ALLG CR+HNN+EL +  AE +++++P++S  YV L
Sbjct: 478 AGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSL 537

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            ++YA +G+W+   +VR LM    I+K  G SW+D
Sbjct: 538 ASLYAFLGKWESVEKVRELMDEKFIRKERGISWID 572



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 202/452 (44%), Gaps = 88/452 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y +     +ARK+FD+M  R++ SWN M++GY      G +  AR LFD M E+D 
Sbjct: 104 LIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAK---LGDVNNARKLFDRMMEKDV 160

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM-ISGFLQNGDVANAIEFFDRMPG 119
           V+WNT++  YAK G   EA+ L+     R  + +NA   +G L        ++   ++ G
Sbjct: 161 VSWNTIVLAYAKQGCFNEAIGLYRDF-RRLDMGFNAFSFAGVLILCVKLKELQLAKQVHG 219

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           +       LV+G + N  L                        ++++  Y + G +  AR
Sbjct: 220 Q------VLVAGFLSNLVLS-----------------------SSIVDAYAKCGEMRCAR 250

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            LFD++ V            ++I +W +++  YAK GD+ SA E+F QM E++  SW+ +
Sbjct: 251 TLFDEMLV------------KDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSAL 298

Query: 240 ISGYIHVLDMEEASNLFVKM----PHPDTLTW---------------------------- 267
           ISGY       EA + F KM     +P+  T+                            
Sbjct: 299 ISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYF 358

Query: 268 -------NAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFI 319
                  ++++  Y++ G LE +   F  M  K ++V WN+MI+    N   E A+++F 
Sbjct: 359 RCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFN 418

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT--KTVIPDVPINNALITMYARC 377
            M   G KPDR TF  ILS  S    +  G++  + +T    V PD    + LI +  R 
Sbjct: 419 DMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRA 478

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           G  VE     E M    +   W+A++G C  H
Sbjct: 479 GCFVELVNELENMSCKPDDRVWSALLGVCRIH 510



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 177/389 (45%), Gaps = 65/389 (16%)

Query: 6   VKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS-GFLEEARYLFDIMPERDCVTWN 64
           VK +E+  A+++  ++     +S  V+ S  + +    G +  AR LFD M  +D   W 
Sbjct: 206 VKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWT 265

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGR 120
           T++SGYAK G+M  A  LF+ MP +N VSW+A+ISG+ +N     A+++F +M       
Sbjct: 266 TIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINP 325

Query: 121 DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           +  + S+ +        L    +V   L++   RC+         ++LI  Y + G +E 
Sbjct: 326 EQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCN-----TIVVSSLIDMYSKCGMLEA 380

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           +  +F  +        GN   K+++V WN+MI   A+ G    A ++F  M+E       
Sbjct: 381 SCCVFHLM--------GN---KQDVVVWNTMISALAQNGHGEKAMQMFNDMVE------- 422

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
              SG                   PD +T+  ++S  +  G ++  L FFK M   + V 
Sbjct: 423 ---SGL-----------------KPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVF 462

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGE----KPDRHTFSSILSMSSGIVDLHLGMQIH 353
            +     C    D  G    F+++  E E    KPD   +S++L    G+  +H  +++ 
Sbjct: 463 PDQEHYSCLI--DLLGRAGCFVELVNELENMSCKPDDRVWSALL----GVCRIHNNIELG 516

Query: 354 QMVTKTVIPDVPINNA----LITMYARCG 378
           + V + VI   P ++A    L ++YA  G
Sbjct: 517 RKVAERVIELKPQSSAAYVSLASLYAFLG 545



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 128/309 (41%), Gaps = 63/309 (20%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           P T+  N ++  Y + G    A   F +M  +NL SWN M+AG     D   A KLF +M
Sbjct: 96  PTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRM 155

Query: 322 ----------------------QVEGEKPD---------RHTFSSILSMSSGIVDLHLGM 350
                                 +  G   D           +F+ +L +   + +L L  
Sbjct: 156 MEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAK 215

Query: 351 QIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLL---------------- 393
           Q+H Q++    + ++ ++++++  YA+CG +  AR +F+EM +                 
Sbjct: 216 QVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWG 275

Query: 394 --------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
                         KN VSW+A+I G A +    EAL+ F  M  F + P   TF S L 
Sbjct: 276 DMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLC 335

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           ACA    ++ G+Q    ++  Y         +SL+D+  + G LE +  +   M  + D 
Sbjct: 336 ACASIAALKHGKQVHGYLIRTY-FRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDV 394

Query: 500 AVWGALLGA 508
            VW  ++ A
Sbjct: 395 VVWNTMISA 403



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 350 MQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           + +H   T    P   + N LI MY  CG  VEAR +F++M  ++N+ SWN M+ G A  
Sbjct: 84  VHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMS-VRNLYSWNHMLAGYAKL 142

Query: 410 GFATEALELFKSM 422
           G    A +LF  M
Sbjct: 143 GDVNNARKLFDRM 155


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 172/515 (33%), Positives = 286/515 (55%), Gaps = 42/515 (8%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           +  N +I  Y + G   EA ++F+ M  RN+ SWN M++G+ + GDV NA + FDRM  +
Sbjct: 99  IVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEK 158

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  S + +V    + G  +EA   L +   R D G +       LI+    +  ++ A++
Sbjct: 159 DVVSWNTIVLAYAKQGCFNEAIG-LYRDFRRLDMGFNAFSFAGVLILCVKLK-ELQLAKQ 216

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +  ++ V          F  N+V  +S++  Y+K G++  AR +F++ML +D  +W T++
Sbjct: 217 VHGQVLV--------AGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIV 268

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           SGY    DM  AS LF +MP  + ++W+A++SGYA+      ALD+F +M +        
Sbjct: 269 SGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMK-------- 320

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
                                   G  P+++TFSS L   + I  L  G Q+H  + +T 
Sbjct: 321 -----------------------FGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTY 357

Query: 361 I-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              +  + ++LI MY++CG +  +  +F  M   ++VV WN MI   A +G   +A+++F
Sbjct: 358 FRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMF 417

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M    + P  ITFI +LSAC+H+GLV+EG + FK+M  ++G+ P  EH+A L+D++GR
Sbjct: 418 NDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGR 477

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G   + ++ ++ M  +PD  VW ALLG CR+HNN+EL +  AE +++++P++S  YV L
Sbjct: 478 AGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSL 537

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            ++YA +G+W+   +VR LM    I+K  G SW+D
Sbjct: 538 ASLYAFLGKWESVEKVRELMDEKFIRKERGISWID 572



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 201/452 (44%), Gaps = 88/452 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y +     +ARK+FD+M  R++ SWN M++GY      G +  AR LFD M E+D 
Sbjct: 104 LIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAK---LGDVNNARKLFDRMMEKDV 160

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM-ISGFLQNGDVANAIEFFDRMPG 119
           V+WNT++  YAK G   EA+ L+     R  + +NA   +G L        ++   ++ G
Sbjct: 161 VSWNTIVLAYAKQGCFNEAIGLYRDF-RRLDMGFNAFSFAGVLILCVKLKELQLAKQVHG 219

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           +       LV+G + N  L                        ++++  Y + G +  AR
Sbjct: 220 Q------VLVAGFLSNLVLS-----------------------SSIVDAYSKCGEMRCAR 250

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            LFD++ V            ++I +W +++  YAK GD+ SA E+F QM E++  SW+ +
Sbjct: 251 TLFDEMLV------------KDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSAL 298

Query: 240 ISGYIHVLDMEEASNLFVKM----PHPDTLTW---------------------------- 267
           ISGY       EA + F KM     +P+  T+                            
Sbjct: 299 ISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYF 358

Query: 268 -------NAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFI 319
                  ++++  Y++ G LE +   F  M  K ++V WN+MI+    N   E A+++F 
Sbjct: 359 RCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFN 418

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT--KTVIPDVPINNALITMYARC 377
            M   G KPDR TF  ILS  S    +  G++  + +T    V PD      LI +  R 
Sbjct: 419 DMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRA 478

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           G  VE     E M    +   W+A++G C  H
Sbjct: 479 GCFVELVNELENMSCKPDDRVWSALLGVCRIH 510



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 189/414 (45%), Gaps = 69/414 (16%)

Query: 6   VKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS-GFLEEARYLFDIMPERDCVTWN 64
           VK +E+  A+++  ++     +S  V+ S  + +    G +  AR LFD M  +D   W 
Sbjct: 206 VKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWT 265

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGR 120
           T++SGYAK G+M  A  LF+ MP +N VSW+A+ISG+ +N     A+++F +M       
Sbjct: 266 TIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINP 325

Query: 121 DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           +  + S+ +        L    +V   L++   RC+         ++LI  Y + G +E 
Sbjct: 326 EQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCN-----TIVVSSLIDMYSKCGMLEA 380

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           +  +F  +        GN   K+++V WN+MI   A+ G    A ++F  M+E       
Sbjct: 381 SCCVFHLM--------GN---KQDVVVWNTMISALAQNGHGEKAMQMFNDMVE------- 422

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
              SG                   PD +T+  ++S  +  G ++  L FFK M   + V 
Sbjct: 423 ---SGL-----------------KPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVF 462

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGE----KPDRHTFSSILSMSSGIVDLHLGMQIH 353
            +     C    D  G    F+++  E E    KPD   +S++L    G+  +H  +++ 
Sbjct: 463 PDQEHYACLI--DLLGRAGCFVELVNELENMSCKPDDRVWSALL----GVCRIHNNIELG 516

Query: 354 QMVTKTVIPDVPINNA----LITMYARCG---AIVEARIIFEEMKLLKNV-VSW 399
           + V + VI   P ++A    L ++YA  G   ++ + R + +E  + K   +SW
Sbjct: 517 RKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISW 570



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 128/309 (41%), Gaps = 63/309 (20%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           P T+  N ++  Y + G    A   F +M  +NL SWN M+AG     D   A KLF +M
Sbjct: 96  PTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRM 155

Query: 322 ----------------------QVEGEKPD---------RHTFSSILSMSSGIVDLHLGM 350
                                 +  G   D           +F+ +L +   + +L L  
Sbjct: 156 MEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAK 215

Query: 351 QIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLL---------------- 393
           Q+H Q++    + ++ ++++++  Y++CG +  AR +F+EM +                 
Sbjct: 216 QVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWG 275

Query: 394 --------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
                         KN VSW+A+I G A +    EAL+ F  M  F + P   TF S L 
Sbjct: 276 DMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLC 335

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           ACA    ++ G+Q    ++  Y         +SL+D+  + G LE +  +   M  + D 
Sbjct: 336 ACASIAALKHGKQVHGYLIRTY-FRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDV 394

Query: 500 AVWGALLGA 508
            VW  ++ A
Sbjct: 395 VVWNTMISA 403



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 350 MQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           + +H   T    P   + N LI MY  CG  VEAR +F++M  ++N+ SWN M+ G A  
Sbjct: 84  VHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMS-VRNLYSWNHMLAGYAKL 142

Query: 410 GFATEALELFKSM 422
           G    A +LF  M
Sbjct: 143 GDVNNARKLFDRM 155


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 178/540 (32%), Positives = 297/540 (55%), Gaps = 27/540 (5%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G ++EAR LF+ M       +  +I GYA  G +E+AL+LF  MP ++++SWN+M+ G 
Sbjct: 63  NGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLISWNSMLKGC 122

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
           L+ GD+  A   FD+M  R+  S + +++GL++ G ++ A     +C  R    +D V A
Sbjct: 123 LKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVA-----ECLFRVMPTKD-VTA 176

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +N+++ G+   GRVE+A +LF+K+P             RN++SW S+I      G    A
Sbjct: 177 WNSMVHGFFSNGRVEDAIELFEKMP------------NRNVISWTSVIGGLDHNGRSFEA 224

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDM------EEASNLFVKMPHP-DTLTWNAMVSGY 274
             +F +ML     + +T+        ++       +   L VK  +  +     +++S Y
Sbjct: 225 LVVFHKMLASFKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFY 284

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
           A    ++ A   F     +N+V W +++ G   N  +  A+++F  M      P++ + +
Sbjct: 285 ANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLT 344

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLL 393
           S L+   G+  +  G ++H +  K  +  D+ ++N+L+ MY +CG I +   +F  M   
Sbjct: 345 SALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSR- 403

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           KNVVSWN++I GCA HGF   AL LF  M   +V P  IT   +LSAC H+G++ +GR  
Sbjct: 404 KNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCF 463

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
           FK     +GIE   EH++S+VD++GR+G+LE+A  LI  MP + +  VW ALL +   H+
Sbjct: 464 FKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEALIHIMPGKANYMVWLALLSSSINHS 523

Query: 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           NV +A+ AA+ ++ ++P  S  Y LL N+YA  G+W + +++R  MK   I K  G SW+
Sbjct: 524 NVHVAERAAKCVLDLQPNCSAAYTLLSNLYASTGKWTEVSKIRKKMKDEGILKQPGSSWI 583



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 197/441 (44%), Gaps = 37/441 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI GY     +  A KLF EMP +D++SWN M+ G +     G L  A  +FD M ER+ 
Sbjct: 87  MIGGYADEGRLEDALKLFYEMPVKDLISWNSMLKGCLK---CGDLTMACNMFDKMSERNV 143

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W T+I+G  + G +E A  LF  MP ++V +WN+M+ GF  NG V +AIE F++MP R
Sbjct: 144 VSWTTIINGLLEFGRVEVAECLFRVMPTKDVTAWNSMVHGFFSNGRVEDAIELFEKMPNR 203

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGED-----LVRAYN--TLIVGYGQRG 173
           +  S ++++ GL  NG   EA  V  K  +            L    N  T  +G    G
Sbjct: 204 NVISWTSVIGGLDHNGRSFEALVVFHKMLASFKATSSTLACALTACANICTPFIGVQIHG 263

Query: 174 RVEEARKLFDK--------IPVNCDRGEG-----NVRFKRNIVSWNSMIMCYAKAGDVVS 220
            + +    F++           NC   +      N    RN+V W +++  Y        
Sbjct: 264 LIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTD 323

Query: 221 AREIFEQMLERDTFSWNTMISGYIHV---LDMEEASNLFVKMPH-----PDTLTWNAMVS 272
           A ++F+ M+        + ++  ++    L+  +       + H      D    N++V 
Sbjct: 324 ALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVV 383

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
            Y + G++   +  F RM +KN+VSWNS+I GC  +     A+ LF QM      PD  T
Sbjct: 384 MYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEIT 443

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINN----ALITMYARCGAIVEARIIFE 388
            + +LS       L  G    +   K     + + N    +++ +  R G + EA  +  
Sbjct: 444 LAGLLSACGHSGMLTKGRCFFKHFGKNF--GIEMTNEHYSSMVDLLGRYGQLEEAEALIH 501

Query: 389 EMKLLKNVVSWNAMIGGCASH 409
            M    N + W A++    +H
Sbjct: 502 IMPGKANYMVWLALLSSSINH 522



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 171/398 (42%), Gaps = 67/398 (16%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N ++  + + G +  AR +F +M       +  MI GY     +E+A  LF +MP  D +
Sbjct: 54  NYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLI 113

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVS---------------------------- 297
           +WN+M+ G  + G+L +A + F +M ++N+VS                            
Sbjct: 114 SWNSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAECLFRVMPTKD 173

Query: 298 ---WNSMIAGCETNKDYEGAIKLFIQM------------------------------QVE 324
              WNSM+ G  +N   E AI+LF +M                               + 
Sbjct: 174 VTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLA 233

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEA 383
             K    T +  L+  + I    +G+QIH ++ KT    +  I+ +LI+ YA C  I  A
Sbjct: 234 SFKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNA 293

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
             IF +  + +NVV W A++ G   +   T+AL++FK M    VLP   +  S L++C  
Sbjct: 294 SSIFND-NVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCG 352

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
              V+ GR+   ++ ++ G+E  I    SLV +  + G + D + +   M    +   W 
Sbjct: 353 LEAVDRGRE-VHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMS-RKNVVSWN 410

Query: 504 ALLGACRVH--NNVELAQVAAEALMKVEPENSTPYVLL 539
           +++  C  H      L   A     +V+P+  T   LL
Sbjct: 411 SIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLL 448



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 165/368 (44%), Gaps = 55/368 (14%)

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           N ++S ++    ++EA +LF KM  P    +  M+ GYA  G LE AL  F  MP K+L+
Sbjct: 54  NYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLI 113

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SWNSM+ GC    D   A  +F       +K       S  ++ +G+++    +++ + +
Sbjct: 114 SWNSMLKGCLKCGDLTMACNMF-------DKMSERNVVSWTTIINGLLEFGR-VEVAECL 165

Query: 357 TKTVIP--DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
            + V+P  DV   N+++  +   G + +A  +FE+M   +NV+SW ++IGG   +G + E
Sbjct: 166 FR-VMPTKDVTAWNSMVHGFFSNGRVEDAIELFEKMP-NRNVISWTSVIGGLDHNGRSFE 223

Query: 415 ALELF-KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV------NEYGIEPRI 467
           AL +F K + SFK   T  T    L+ACA+      G Q    +V      NEY     I
Sbjct: 224 ALVVFHKMLASFKA--TSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLI 281

Query: 468 EHFA------------------------SLVDIVGRHGRLEDAMDLIKG---MPFEPDKA 500
             +A                        +L+   G + R  DA+ + KG   M   P+++
Sbjct: 282 SFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQS 341

Query: 501 VWGALLGAC----RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
              + L +C     V    E+  VA +  ++ +   S   V+   MY   G  +D   V 
Sbjct: 342 SLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVV---MYTKCGHINDGIAVF 398

Query: 557 LLMKSNNI 564
             M   N+
Sbjct: 399 TRMSRKNV 406


>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 698

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 209/640 (32%), Positives = 321/640 (50%), Gaps = 94/640 (14%)

Query: 1   MISGY-VKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           +++ Y V    +A AR+LFDE+P+ D  SWN +++ ++S    G    A  L   M ER 
Sbjct: 40  LLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSI---GAHPAACRLLRAMHERG 96

Query: 60  -------------------CVTWNT--------------------VISGYAKTGEMEEAL 80
                              C    T                    ++  YAK G   +A 
Sbjct: 97  LAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRTRDAC 156

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNG 136
           RLF+ MP RN VSWNA+++G++++G VA A++ F  M       D A+ +AL++ ++ + 
Sbjct: 157 RLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDEATFAALLT-VVNDS 215

Query: 137 E---LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
               + +    +VK GS        +   N  I  Y Q G +  +R++FD+I    DR +
Sbjct: 216 TCFLMHQLHGKIVKYGSALG-----LIVLNAAITAYSQCGALANSRRIFDEIG---DRSD 267

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML-----ERDTFSWNTMISG------ 242
                   ++SWN+M+  YA  G    A   F  M+     + D +S+ ++IS       
Sbjct: 268 --------LISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAEHRD 319

Query: 243 ----YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN---LELALDFFKRMPQKNL 295
                IH L    + N F  + H      NA+++ Y +      +E A   F  +  K+ 
Sbjct: 320 HGGTVIHGL---VSKNGFEGVTH----VCNALIAMYTRFSENCMMEDAYKCFDSLLLKDT 372

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           VSWNSM+ G   +     A++ F  MQ E    D + FS+ L   S +  L LG QIH +
Sbjct: 373 VSWNSMLTGYSQHGLSADALRFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIHGL 432

Query: 356 VTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           V ++    +  ++++LI MY++ G + +A   FEE     + V WN+M+ G A HG A  
Sbjct: 433 VIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEEADK-SSSVPWNSMMFGYAQHGKAQA 491

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
              LF  M   KV   +ITF+ +++AC+HAGLV+EG +   +M + YGI  R+EH+A  +
Sbjct: 492 VRSLFNQMLELKVPLDHITFVGLITACSHAGLVDEGSEILNTMESRYGIPLRMEHYACGI 551

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D+ GR G+L+ A +LI  MPFEPD  VW  LLGACRVH N+ELA   A  L++ EP   +
Sbjct: 552 DLYGRAGQLDKAKELIDSMPFEPDAMVWMTLLGACRVHGNMELASDVASHLLEAEPRQHS 611

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            YVLL NMY+ +G W D   V+  MK+  + K  G+SW++
Sbjct: 612 TYVLLSNMYSGLGMWSDRAIVQKEMKNKGLSKVPGWSWIE 651



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 147/552 (26%), Positives = 251/552 (45%), Gaps = 71/552 (12%)

Query: 29  WNVMISGY-ISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP 87
           WN +++ Y +SS G   L  AR LFD +P  D  +WN++++ +   G    A RL  +M 
Sbjct: 37  WNQLLTAYSVSSPG---LAAARRLFDEIPRLDAASWNSLLAAHVSIGAHPAACRLLRAMH 93

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
            R               G  AN       +    +   SAL + L           + VK
Sbjct: 94  ER---------------GLAANTFALGSALRSAAAMGCSALGTQL---------HSLAVK 129

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
            G       D V +   L+  Y + GR  +A +LFD +P            +RN VSWN+
Sbjct: 130 AGL-----ADNVFSATALLHMYAKCGRTRDACRLFDGMP------------ERNTVSWNA 172

Query: 208 MIMCYAKAGDVVSAREIFEQMLERDTFSWN-TMISGYIHVLD------MEEASNLFVKMP 260
           ++  Y ++G V  A ++F +M ER+ F  +    +  + V++      M +     VK  
Sbjct: 173 LVAGYVESGKVAPAVQLFVEM-EREGFLPDEATFAALLTVVNDSTCFLMHQLHGKIVKYG 231

Query: 261 HP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLF 318
                +  NA ++ Y+Q G L  +   F  +  + +L+SWN+M+    T+     A++ F
Sbjct: 232 SALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRFF 291

Query: 319 IQ-MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYAR 376
              M+  G +PD ++F+SI+S  +   D H G  IH +V+K     V  + NALI MY R
Sbjct: 292 ASMMRASGVQPDMYSFTSIISACAEHRD-HGGTVIHGLVSKNGFEGVTHVCNALIAMYTR 350

Query: 377 CGA---IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
                 + +A   F+ + LLK+ VSWN+M+ G + HG + +AL  F+ M+S  +      
Sbjct: 351 FSENCMMEDAYKCFDSL-LLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSENITTDEYA 409

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           F + L +C+   L+  GRQ    +V   G        +SL+ +  + G L+DAM   +  
Sbjct: 410 FSAALRSCSDLALLRLGRQ-IHGLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFE-- 466

Query: 494 PFEPDKAV---WGALLGACRVHNNVELAQVAAEALMKVE-PENSTPYVLLYNMYADVGRW 549
             E DK+    W +++     H   +  +     +++++ P +   +V L    +  G  
Sbjct: 467 --EADKSSSVPWNSMMFGYAQHGKAQAVRSLFNQMLELKVPLDHITFVGLITACSHAGLV 524

Query: 550 DDANEVRLLMKS 561
           D+ +E+   M+S
Sbjct: 525 DEGSEILNTMES 536


>gi|302812269|ref|XP_002987822.1| hypothetical protein SELMODRAFT_126782 [Selaginella moellendorffii]
 gi|300144441|gb|EFJ11125.1| hypothetical protein SELMODRAFT_126782 [Selaginella moellendorffii]
          Length = 599

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 188/522 (36%), Positives = 280/522 (53%), Gaps = 40/522 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+S +       +  +LFD++P R+++SW  M+    S    G LEE + +F   P  D 
Sbjct: 73  MLSAFAHTASRDEVGELFDKLPVRELISWTSMLH---SCARDGRLEEMQAVFWRFPCWDV 129

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           + WN VI+  A+ G + +AL   + +PAR+VV+WN M+      G VA     F+RMP  
Sbjct: 130 ICWNEVITACAREGHLSDALMFHHGIPARDVVTWNIMVRALALEGAVAA----FERMPQH 185

Query: 121 DSASLSALVSGLIQNGELDEAARVL--VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
           D  S +++V      GE   AAR+L  + C S        + A N++I  YG +G+VEEA
Sbjct: 186 DIVSWNSMVHAYGLAGETGSAARLLQQLACFS--------LAATNSVIGAYGLKGQVEEA 237

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE---RDTFS 235
           R++FD +              RN VSWNSM+  Y +AG V  A+ +F+ M +   RD  S
Sbjct: 238 RRVFDAM------------LHRNTVSWNSMVAGYVRAGRVAEAKLLFDAMADTAKRDVVS 285

Query: 236 WNTMISGYIHVLD---MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           WNTM+  +    D   +E     F +MP     +WNAM+  YA  G  + A   F+RMP+
Sbjct: 286 WNTMLPAFTVTEDAAVLELVEECFRRMPFTSQASWNAMLHAYACGGVTQRAEQLFERMPE 345

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K+  SW+++ +    +   + A  +   M ++G KPD  ++ S L       DL  G  +
Sbjct: 346 KDSASWSALASARLLSGKCQSAASVVALMDLDGCKPDAVSYISALEACGMASDLAQGRIL 405

Query: 353 HQMVTKTVIPDV----PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           H  +     P +     +  AL++MY+RC A+ EA   F+ M   KN+VSW AM+   A 
Sbjct: 406 HAEIVAADDPALQDGGKVATALVSMYSRCAALGEAVAAFDGMSS-KNLVSWTAMVAALAQ 464

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           +GF++ A   F  M      P  I+FIS+LSAC+HAG VE G  HF SMV +YGI+P ++
Sbjct: 465 NGFSSLARLAFWRMELNGFTPDSISFISILSACSHAGSVELGWSHFVSMVGDYGIQPGLD 524

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
           H+A ++D++GR G LEDA +L+  MPF P      +LL ACR
Sbjct: 525 HYACVLDLLGRAGNLEDAHELMDAMPFIPGPDSRTSLLSACR 566



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 166/374 (44%), Gaps = 64/374 (17%)

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
           MP+ + +S N +ISGF +NG + NA   FD M  RD  S ++++    ++G   EA  V 
Sbjct: 1   MPS-STLSCNRIISGFARNGHLENAKSLFDAMFDRDVVSWNSILGAYSRHGATSEAREVF 59

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
            K  +  DG      ++++++  +      +E  +LFDK+PV            R ++SW
Sbjct: 60  GKMPAT-DG-----FSWSSMLSAFAHTASRDEVGELFDKLPV------------RELISW 101

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
            SM+   A+ G +   + +F +    D   WN +I+       + +A      +P  D +
Sbjct: 102 TSMLHSCARDGRLEEMQAVFWRFPCWDVICWNEVITACAREGHLSDALMFHHGIPARDVV 161

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           TWN MV   A    LE A+  F+RMPQ ++VSWNSM+       +   A +L  Q+    
Sbjct: 162 TWNIMVRALA----LEGAVAAFERMPQHDIVSWNSMVHAYGLAGETGSAARLLQQLAC-- 215

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARI 385
                  FS                             +   N++I  Y   G + EAR 
Sbjct: 216 -------FS-----------------------------LAATNSVIGAYGLKGQVEEARR 239

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM--RSFKVLPTYITFISVLSACAH 443
           +F+ M L +N VSWN+M+ G    G   EA  LF +M   + + + ++ T +   +    
Sbjct: 240 VFDAM-LHRNTVSWNSMVAGYVRAGRVAEAKLLFDAMADTAKRDVVSWNTMLPAFTVTED 298

Query: 444 AGLVEEGRQHFKSM 457
           A ++E   + F+ M
Sbjct: 299 AAVLELVEECFRRM 312



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 143/341 (41%), Gaps = 46/341 (13%)

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           T S N +ISG+     +E A +LF  M   D ++WN+++  Y++ G    A + F +MP 
Sbjct: 5   TLSCNRIISGFARNGHLENAKSLFDAMFDRDVVSWNSILGAYSRHGATSEAREVFGKMPA 64

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
            +  SW+SM++        +   +LF ++      P R   S    + S   D  L  ++
Sbjct: 65  TDGFSWSSMLSAFAHTASRDEVGELFDKL------PVRELISWTSMLHSCARDGRL-EEM 117

Query: 353 HQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA----- 407
             +  +    DV   N +IT  AR G + +A ++F      ++VV+WN M+   A     
Sbjct: 118 QAVFWRFPCWDVICWNEVITACAREGHLSDA-LMFHHGIPARDVVTWNIMVRALALEGAV 176

Query: 408 -------------------SHGFATE---ALELFKSMRSFKVLPTYITFISVLSACAHAG 445
                              ++G A E   A  L + +  F +  T     SV+ A    G
Sbjct: 177 AAFERMPQHDIVSWNSMVHAYGLAGETGSAARLLQQLACFSLAATN----SVIGAYGLKG 232

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV--WG 503
            VEE R+ F +M++   +      + S+V    R GR+ +A  L   M     + V  W 
Sbjct: 233 QVEEARRVFDAMLHRNTVS-----WNSMVAGYVRAGRVAEAKLLFDAMADTAKRDVVSWN 287

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
            +L A  V  +  + ++  E   ++   +   +  + + YA
Sbjct: 288 TMLPAFTVTEDAAVLELVEECFRRMPFTSQASWNAMLHAYA 328


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 193/623 (30%), Positives = 334/623 (53%), Gaps = 64/623 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR-DVVSWNVMISGYISS-------------------- 39
           ++  Y K  ++  AR+LFD MP++ DVVSWN MIS Y S+                    
Sbjct: 221 IVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAP 280

Query: 40  ------------RGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEALRLF 83
                         S F+++  ++   + +     +    N +I+ YA+ G+M EA  +F
Sbjct: 281 NTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIF 340

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
            +M   + +SWN+M+SGF+QNG    A++F+  M  RD+     LV+ +        +  
Sbjct: 341 YNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEM--RDAGQKPDLVAVISIIAASARSGN 398

Query: 144 VL----VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
            L    +   +  +G +  ++  N+L+  Y +   ++    +FDK+P             
Sbjct: 399 TLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP------------D 446

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMI---SGYIHVLDMEEA 252
           +++VSW ++I  +A+ G    A E+F ++    ++ D    ++++   SG   +  ++E 
Sbjct: 447 KDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEI 506

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
            +  ++    D +  N +V  Y + GN++ A   F+ +  K++VSW SMI+    N    
Sbjct: 507 HSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLAN 566

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNALI 371
            A++LF  M+  G +PD  +  SILS ++ +  L  G +IH  ++ K  + +  + + L+
Sbjct: 567 EALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLV 626

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            MYARCG + ++R +F  ++  K++V W +MI     HG    A++LF+ M    + P +
Sbjct: 627 DMYARCGTLEKSRNVFNFIRN-KDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDH 685

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           I F++VL AC+H+GL+ EGR+  +SM  EY +EP  EH+A LVD++GR   LE+A   +K
Sbjct: 686 IAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVK 745

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
           GM  EP   VW ALLGAC++H+N EL ++AA+ L++++PEN   YVL+ N+Y+   RW D
Sbjct: 746 GMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKD 805

Query: 552 ANEVRLLMKSNNIKKPTGYSWVD 574
              VR+ MK++ +KK  G SW++
Sbjct: 806 VEXVRMRMKASGLKKNPGCSWIE 828



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 131/489 (26%), Positives = 242/489 (49%), Gaps = 54/489 (11%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASL 125
           Y K G + +A +LF+ MP + + +WNAMI  ++ NG+   ++E +  M       D+ + 
Sbjct: 124 YGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTF 183

Query: 126 SALVS--GLIQNGELD-EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
             ++   GL+++     E   + +K     +G   +V   N+++  Y +   +  AR+LF
Sbjct: 184 PCILKACGLLKDRRYGAEVHGLAIK-----EGYVSIVFVANSIVGMYTKCNDLNGARQLF 238

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
           D++P            K ++VSWNSMI  Y+  G  + A  +F +M ++ + + NT    
Sbjct: 239 DRMPE-----------KEDVVSWNSMISAYSSNGQSIEALRLFGEM-QKASLAPNTYT-- 284

Query: 243 YIHVLDMEEASNLFVKMP------------HPDTLTWNAMVSGYAQIGNLELALDFFKRM 290
           ++  L   E S+ F+K              + +    NA+++ YA+ G +  A + F  M
Sbjct: 285 FVAALQACEDSS-FIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNM 343

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
              + +SWNSM++G   N  Y  A++ + +M+  G+KPD     SI++ S+   +   GM
Sbjct: 344 DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGM 403

Query: 351 QIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           QIH    K  +  D+ + N+L+ MYA+  ++     IF++M   K+VVSW  +I G A +
Sbjct: 404 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTTIIAGHAQN 462

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G  + ALELF+ ++   +    +   S+L AC+   L+   ++     ++ Y I   +  
Sbjct: 463 GSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKE-----IHSYIIRKGLSD 517

Query: 470 FA---SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM 526
                 +VD+ G  G ++ A  + + + F+ D   W +++ +C VHN +    +    LM
Sbjct: 518 LVLQNGIVDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-SCYVHNGLANEALELFHLM 575

Query: 527 K---VEPEN 532
           K   VEP++
Sbjct: 576 KETGVEPDS 584



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 172/364 (47%), Gaps = 45/364 (12%)

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           L+  YG+ G + +A KLFD +P             + I +WN+MI  Y   G+ + + E+
Sbjct: 120 LVFMYGKCGCLVDAEKLFDGMP------------HKTIFTWNAMIGAYVTNGEPLGSLEL 167

Query: 225 FEQM------LERDTFSWNTMISGY---------IHVLDMEEA--SNLFVKMPHPDTLTW 267
           + +M      L+  TF       G          +H L ++E   S +FV          
Sbjct: 168 YREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVA--------- 218

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
           N++V  Y +  +L  A   F RMP+K ++VSWNSMI+   +N     A++LF +MQ    
Sbjct: 219 NSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASL 278

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARI 385
            P+ +TF + L        +  GM IH  V K +   +V + NALI MYAR G + EA  
Sbjct: 279 APNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAAN 338

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           IF  M    + +SWN+M+ G   +G   EAL+ +  MR     P  +  IS+++A A +G
Sbjct: 339 IFYNMDDW-DTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSG 397

Query: 446 LVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
               G Q H  +M N  G++  ++   SLVD+  +   ++    +   MP + D   W  
Sbjct: 398 NTLHGMQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTT 454

Query: 505 LLGA 508
           ++  
Sbjct: 455 IIAG 458



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 147/308 (47%), Gaps = 17/308 (5%)

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV--KMPHPDTLTWNAM 270
            K G V  A +    +    + S  ++   Y  VL++  +       +  H   +T NA+
Sbjct: 51  CKRGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNAL 110

Query: 271 VSG----------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
            +           Y + G L  A   F  MP K + +WN+MI    TN +  G+++L+ +
Sbjct: 111 FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYRE 170

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGA 379
           M+V G   D  TF  IL     + D   G ++H +  K   +  V + N+++ MY +C  
Sbjct: 171 MRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCND 230

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           +  AR +F+ M   ++VVSWN+MI   +S+G + EAL LF  M+   + P   TF++ L 
Sbjct: 231 LNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQ 290

Query: 440 ACAHAGLVEEGR-QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           AC  +  +++G   H   + + Y I   + +  +L+ +  R G++ +A ++   M  + D
Sbjct: 291 ACEDSSFIKQGMFIHATVLKSSYYINVFVAN--ALIAMYARFGKMGEAANIFYNMD-DWD 347

Query: 499 KAVWGALL 506
              W ++L
Sbjct: 348 TISWNSML 355


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 203/625 (32%), Positives = 326/625 (52%), Gaps = 72/625 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEAR----------- 49
           +++ Y      A AR++FDEMP RDVVSWN ++S  +++   G LE+A+           
Sbjct: 160 LVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTN---GMLEDAKRAVVGMMRSGV 216

Query: 50  -----YLFDIMP----ERD-----CV--------------TWNTVISGYAKTGEMEEALR 81
                 L  I+P    ERD     CV                N ++  Y K G++E ++ 
Sbjct: 217 PVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLESSMH 276

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNGE 137
           +FN M  +N VSWN+ I  F   G   + +E F  M   D    S +LS+L+  L+  G 
Sbjct: 277 VFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGY 336

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
                + L     R     D+  A NTL+  Y + G  E+A  +F+ I V          
Sbjct: 337 F-HLGKELHGYSIRRAVESDIFIA-NTLMDMYAKFGCSEKASAIFENIEV---------- 384

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEAS 253
             RN+VSWN+MI    + G    A  +  +M +     ++F+   ++     V  ++   
Sbjct: 385 --RNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGK 442

Query: 254 NLFV----KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            +      +    D    NA++  YA+ G L LA   F R  +K+ VS+N++I G   ++
Sbjct: 443 QIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR-SEKDGVSYNTLIVGYSQSQ 501

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INN 368
               ++ LF QM++ G + D  +F   LS  S +     G +IH ++ K ++   P + N
Sbjct: 502 CCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLAN 561

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           +L+ +Y + G +  A  IF  +   K+V SWN MI G   HG    A ELF  M+   + 
Sbjct: 562 SLLDVYTKGGMLDTASKIFNRITQ-KDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIE 620

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
             ++++I+VLS C+H GLV+ G+++F  M+ +  I+P+  H+A +VD++GR G+L ++ +
Sbjct: 621 YDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQ-NIKPQQMHYACMVDLLGRAGQLSESAE 679

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           +I+ MPF  +  VWGALLG+CR+H ++ELA++AAE L +++PENS  Y LL NMY++ G 
Sbjct: 680 IIRNMPFRANSDVWGALLGSCRIHGDIELARLAAEHLFELKPENSGYYTLLRNMYSESGM 739

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWV 573
           W++AN V+ LMKS  ++K   YSWV
Sbjct: 740 WNEANGVKKLMKSRKVQKNPAYSWV 764



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 140/473 (29%), Positives = 233/473 (49%), Gaps = 31/473 (6%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIE-FFDRM 117
           D    NT+++ YA  G   +A R+F+ MPAR+VVSWN+++S  L NG + +A       M
Sbjct: 153 DVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGMM 212

Query: 118 PGRDSASLSALVSGLIQNG-ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
                 ++++LVS L   G E DE   + V       G   +V   N L+  YG+ G +E
Sbjct: 213 RSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLE 272

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            +  +F+ +             ++N VSWNS I C+A AG      E+F  M E D    
Sbjct: 273 SSMHVFNGMQ------------EKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPG 320

Query: 237 NTMIS---------GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
           +  +S         GY H L  E       +    D    N ++  YA+ G  E A   F
Sbjct: 321 SVTLSSLLPALVDLGYFH-LGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIF 379

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
           + +  +N+VSWN+MIA    N     A +L I+MQ  GE P+  T  ++L   S +  + 
Sbjct: 380 ENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVK 439

Query: 348 LGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           +G QIH   + ++++ D+ ++NALI +YA+CG +  AR IF+  +  K+ VS+N +I G 
Sbjct: 440 MGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRSE--KDGVSYNTLIVGY 497

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE-YGIEP 465
           +      E+L LF+ MR   +    ++F+  LSAC++    ++G++    +V       P
Sbjct: 498 SQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHP 557

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            + +  SL+D+  + G L+ A  +   +  + D A W  ++    +H  +++A
Sbjct: 558 FLAN--SLLDVYTKGGMLDTASKIFNRIT-QKDVASWNTMILGYGMHGQIDVA 607



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 132/297 (44%), Gaps = 31/297 (10%)

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           T  S + HVL +    +L ++  H  +L   A+ + +   G L L+      +P  +L+ 
Sbjct: 11  TAASLHEHVLRLHCGGSLLLRRAHAASLVSGALTASFPLAGALLLSYAALPDIPSAHLIL 70

Query: 298 ------------WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
                       WNS+     +      A++++ +M   G +PD  TF   L  ++ +  
Sbjct: 71  RHHPFRLRSAFLWNSLSRALASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQ 130

Query: 346 LHL---GMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
                 G ++H    +   ++ DV   N L+T YA CG   +AR +F+EM   ++VVSWN
Sbjct: 131 AEHPAKGAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMP-ARDVVSWN 189

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA-----GLVEEGRQHFK 455
           +++    ++G   +A      M    V     + +S+L AC        GL   G     
Sbjct: 190 SLVSALLTNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHG----- 244

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
            +V ++G+   +    +LVD+ G+ G LE +M +  GM  E ++  W + +G C  H
Sbjct: 245 -LVLKFGLNSVVNLGNALVDMYGKFGDLESSMHVFNGMQ-EKNEVSWNSAIG-CFAH 298



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 120/280 (42%), Gaps = 50/280 (17%)

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
           G  + A  +   +L  D F+ NT+++ Y       +A  +F +MP  D ++WN++VS   
Sbjct: 137 GAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALL 196

Query: 276 QIGNLELA----LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
             G LE A    +   +     N+ S  S++  C T +D EG                  
Sbjct: 197 TNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERD-EG------------------ 237

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEM 390
                            G+ +H +V K  +   V + NAL+ MY + G +  +  +F  M
Sbjct: 238 ----------------FGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLESSMHVFNGM 281

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
           +  KN VSWN+ IG  A  GF  + LE+F+ M    V P  +T  S+L A     LV+ G
Sbjct: 282 Q-EKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPA-----LVDLG 335

Query: 451 RQHFKSMVNEYGIEPRIEH----FASLVDIVGRHGRLEDA 486
             H    ++ Y I   +E       +L+D+  + G  E A
Sbjct: 336 YFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKA 375


>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
          Length = 612

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 188/562 (33%), Positives = 294/562 (52%), Gaps = 62/562 (11%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEAL 80
           D   WN +I  +  S G     +A  LF +M E     D  + + V+   ++ G ++E +
Sbjct: 85  DPFLWNAVIKSH--SHGLD-PRKALLLFCLMLETGVSVDKFSLSLVLKACSRLGFVKEGM 141

Query: 81  RLFNSMPARNVVS----WNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG 136
           ++   +    + S     N +I  +++ G +  A + FDRMP RDS S            
Sbjct: 142 QIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVS------------ 189

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
                                    YN++I GY + G +E AR LFD +P          
Sbjct: 190 -------------------------YNSMIDGYVKCGMIESARGLFDLMP---------- 214

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
           + K+N++SWN MI  YA+  D V+ A+++F++M E+D  SWN++I GY+    ME+A +L
Sbjct: 215 KEKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSL 274

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           F KMP  D +TW  MV GYA++G +  A   F RMP +++V++NSMI G   N+ ++ AI
Sbjct: 275 FNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRYHKEAI 334

Query: 316 KLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITM 373
            +F  M+ E    PD  T   +LS  + +  L   + IH  +          +  ALI  
Sbjct: 335 GIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDT 394

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           Y++CG+I ++  +FEE++  K++  WNAMIGG A HG    A ++   +    + P  IT
Sbjct: 395 YSKCGSIQKSMRVFEEIEN-KSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDIT 453

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           FI VL+AC+H+GLV+EG   F+ M  ++ IEP+++H+  +VDI+ R G +E A +LI+ M
Sbjct: 454 FIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEM 513

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           P EP+  +W   L AC  H   E  ++ A+ L      N + +VLL NMYA  G W +  
Sbjct: 514 PIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPSSFVLLSNMYASFGMWKEVR 573

Query: 554 EVRLLMKSNNIKKPTGYSWVDF 575
            VR  MK   ++K  G SW++ 
Sbjct: 574 RVRTTMKERKLRKIPGCSWIEL 595



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 181/341 (53%), Gaps = 39/341 (11%)

Query: 1   MISGYVKRREMAK-ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           MISGY +R +    A+KLFDEMP++D++SWN +I GY+     G +E+A+ LF+ MP+RD
Sbjct: 226 MISGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVK---HGRMEDAKSLFNKMPKRD 282

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            VTW T++ GYAK G + +A  LF+ MP R+VV++N+MI+G++QN     AI  F+ M  
Sbjct: 283 VVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEK 342

Query: 120 R-----DSASLSALVSGLIQNGELDEAARV-LVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
                 D  +L  ++S + Q G L +A  + L    ++   G  L  A   LI  Y + G
Sbjct: 343 ESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVA---LIDTYSKCG 399

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-- 231
            ++++ ++F++I              ++I  WN+MI   A  G   SA ++  Q+ +R  
Sbjct: 400 SIQKSMRVFEEIE------------NKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSI 447

Query: 232 --DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELAL 284
             D  ++  +++   H   ++E    F  M       P    +  MV   ++ G++ELA 
Sbjct: 448 KPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAK 507

Query: 285 DFFKRMP-QKNLVSWNSMIAGCETNKDYEG----AIKLFIQ 320
           +  + MP + N V W + +  C  +K++E     A  LF+Q
Sbjct: 508 NLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQ 548


>gi|302799473|ref|XP_002981495.1| hypothetical protein SELMODRAFT_114873 [Selaginella moellendorffii]
 gi|300150661|gb|EFJ17310.1| hypothetical protein SELMODRAFT_114873 [Selaginella moellendorffii]
          Length = 605

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 178/569 (31%), Positives = 311/569 (54%), Gaps = 47/569 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K   +  AR +F+ +P+ +  SW +++S +  +   G L  A+  FD  P +  
Sbjct: 58  LVRMYGKCASLDDARLVFESIPEPNEFSWTIIVSAFAQN---GQLSSAKEYFDKAPIKTL 114

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           VT+N +I+GY     + +A  ++  M + N V+WN M+  F QN  + NA   FD+M  R
Sbjct: 115 VTYNVMITGYGHQKNVHQAQDIYGRMSSWNAVTWNVMLQTFAQNRHLRNARNLFDQMRVR 174

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  + + L+   + NG L+ A+ +L K  +      D+V +   ++    Q G+++EA+ 
Sbjct: 175 DEVAWTTLICAYLVNGNLEWASSMLEKMPA-----HDVVVS-TAMVSANAQAGQIDEAKY 228

Query: 181 LFDKIPVNC--------DRGEGNVRF---------KRNIVSWNSMIMCYAKAGDVVSARE 223
           LFD++P++         + G  +             R++ SWN++I  +A+ GD   A +
Sbjct: 229 LFDQMPIHSTESWNALMNTGLSSAELCKSLFDENPARDVFSWNTLISVHAQTGDYQEAVQ 288

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           IF +M  R+T S+N +I+      ++ +A  +F +MP  D+++WN+++ GYAQ+G ++ A
Sbjct: 289 IFNRMPVRNTVSYNLVIAANAEAGNLWQAWRIFDEMPCKDSVSWNSLIQGYAQLGYVDDA 348

Query: 284 LDFFKR-MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
              F   MP+K++VSW+ +IA    +     AI LF +M VE   P+     S L+  SG
Sbjct: 349 RVMFDTMMPKKDVVSWSCIIAAYAQSGHCREAINLFQRMDVE---PNEMVIVSTLAACSG 405

Query: 343 IVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK----LLKNVV 397
             DL LG  IH ++++  +   V +  AL+ MYA+CGAI +AR +F+ M     + ++ V
Sbjct: 406 AKDLALGKAIHARILSPDLRKSVFVGTALLNMYAKCGAIKQARAVFDRMPHKDVVARDTV 465

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           +W++++ G A H  A +A+ L++ M    + P  +T++S+L++C+HA L+ + R  F SM
Sbjct: 466 TWSSLVAGYAHHSHA-DAILLYRDMHLEGIQPDSVTYVSILNSCSHASLLAQARHFFVSM 524

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517
           V ++           +VD++GR G +  A D+++ MPF+PD   W  LLG C+VH +   
Sbjct: 525 VEDH----------CMVDVLGRAGFVGRAEDVVRNMPFQPDVVAWNTLLGCCKVHGDAWR 574

Query: 518 AQVAAEALMKVEPENSTPYVLLYNMYADV 546
             VAA   + + P  +   VLLY MY  +
Sbjct: 575 GAVAAWNAVGISPGFAGSTVLLY-MYGSL 602


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 196/629 (31%), Positives = 331/629 (52%), Gaps = 76/629 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY-----------ISSRGSG------ 43
           +++ YVK   +  A KLFDEMP R+ VS+  +I GY           + SR  G      
Sbjct: 85  LLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELN 144

Query: 44  ---------FLEEARY----------LFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
                     L  A +          ++ +  + D      +I  Y+  G  E A ++F+
Sbjct: 145 PFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFD 204

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDS-ASLSALVSGLIQNGE 137
           ++  +++VSW  M++ +++N     +++ F RM      P   + AS+     GL    E
Sbjct: 205 AIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGL----E 260

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           +    + +  C  +    E+L      LI  Y + G V++A ++F+++P           
Sbjct: 261 VFNVGKAVHGCAFKTSYLEELFVGVE-LIDLYIKSGDVDDALQVFEEMP----------- 308

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
            K +++ W+ MI  YA++     A E+F +M    +  + F+  +++     ++D++  +
Sbjct: 309 -KDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGN 367

Query: 254 NLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            +   +       +    NA++  YA+ G +E +L  F   P    VSWN++I G     
Sbjct: 368 QIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAG 427

Query: 310 DYEGAIKLF---IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVP 365
           + E A+ LF   ++ QV+G +    T+SS+L   +GI  L  G QIH +  KT+   +  
Sbjct: 428 NGEKALILFKDMLECQVQGTEV---TYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTV 484

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           + NALI MYA+CG I +AR++F+ ++   + VSWNAMI G + HG   EAL+ F+SM   
Sbjct: 485 VGNALIDMYAKCGNIKDARLVFDMLRE-HDQVSWNAMISGYSVHGLYGEALKTFESMLET 543

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
           +  P  +TF+ +LSAC++AGL++ G+ +FKSMV EY IEP  EH+  +V ++GR G L+ 
Sbjct: 544 ECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDK 603

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A  L+  +PFEP   VW ALL AC +HN+VEL +++A+ ++++EPE+   +VLL N+YA+
Sbjct: 604 AAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYAN 663

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             RW +   +R  MK   I+K  G SW++
Sbjct: 664 ARRWGNVASIRTSMKRKGIRKEPGLSWIE 692



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 143/527 (27%), Positives = 254/527 (48%), Gaps = 38/527 (7%)

Query: 29  WNVMISGYI--SSRGSGFLEEARYLF-DIMPERDCVTW---NTVISGYAKTGEMEEALRL 82
           +N  I G +  S   +G     +YL  +I+ + +C+     N +++ Y K   + +A +L
Sbjct: 42  FNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKL 101

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD---SASLSALVSGLIQNGELD 139
           F+ MP RN VS+  +I G+ Q    + AI  F R+ G     +  + + V  L+ + E  
Sbjct: 102 FDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWA 161

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           +    +  C  +     D       LI  Y   G  E AR++FD I              
Sbjct: 162 KLGFSVHACVYKLGFDSDAFVG-TALIDCYSVCGYAECARQVFDAIEY------------ 208

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYI--HVLDMEEAS 253
           +++VSW  M+ CY +      + ++F +M     + + F++ +++   +   V ++ +A 
Sbjct: 209 KDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAV 268

Query: 254 N--LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           +   F      +      ++  Y + G+++ AL  F+ MP+ +++ W+ MIA    ++  
Sbjct: 269 HGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQS 328

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNAL 370
           E AI++F +M+     P++ T +S+L   + +VDL LG QIH  V K  +  +V ++NAL
Sbjct: 329 EEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNAL 388

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           + MYA+CG +  +  +F E     + VSWN +I G    G   +AL LFK M   +V  T
Sbjct: 389 MDMYAKCGRMENSLQLFSESPNCTD-VSWNTVIVGYVQAGNGEKALILFKDMLECQVQGT 447

Query: 431 YITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
            +T+ SVL ACA    +E G Q H  S+   Y     + +  +L+D+  + G ++DA  L
Sbjct: 448 EVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGN--ALIDMYAKCGNIKDAR-L 504

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE--PENST 534
           +  M  E D+  W A++    VH     A    E++++ E  P+  T
Sbjct: 505 VFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVT 551


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 194/596 (32%), Positives = 304/596 (51%), Gaps = 103/596 (17%)

Query: 22  PQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALR 81
           PQ  V  + + ++G      SG L  A Y+  +    D    N ++  YAK G+++ A  
Sbjct: 98  PQPFVYIYLIKLAG-----KSGNLFHA-YVLKLGHIDDHFIRNAILDMYAKNGQVDLARN 151

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           LF  M  R +  WN+MISG  ++G+   A+  F+ MP R+                    
Sbjct: 152 LFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARN-------------------- 191

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
                            +  + +++ GY + G +E AR+ FD++P            +R+
Sbjct: 192 -----------------IITWTSMVTGYAKMGDLESARRYFDEMP------------ERS 222

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHV----------- 246
           +VSWN+M   YA+      A  +F QMLE     D  +W   IS    +           
Sbjct: 223 VVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILR 282

Query: 247 -----------------LDM-------EEASNLFVKM-PHPDTLTWNAMVSGYAQIGNLE 281
                            LDM       E A N+F ++    + +TWN M+S Y ++G L 
Sbjct: 283 MIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLS 342

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMS 340
           LA + F  MP++++VSWNSMIAG   N +   +I+LF +M      +PD  T +S+LS  
Sbjct: 343 LARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSAC 402

Query: 341 SGIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
             I  L L   +  +V  K +   +   N+LI MY++CG++ +A  IF+ M   ++VVS+
Sbjct: 403 GHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGT-RDVVSF 461

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N +I G A++G   EA++L  +M    + P ++T+I VL+AC+HAGL+ EG+  FKS+  
Sbjct: 462 NTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ- 520

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
                P ++H+A +VD++GR G L++A  LI+ MP +P   V+G+LL A R+H  V L +
Sbjct: 521 ----APTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGE 576

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           +AA  L ++EP+N   YVLL N+YA  GRW+D   VR +MK   +KK  G SWV++
Sbjct: 577 LAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEY 632



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 213/449 (47%), Gaps = 63/449 (14%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y K  ++  AR LF++M +R +  WN MISG      SG   EA  LF++MP R+ +TW 
Sbjct: 140 YAKNGQVDLARNLFEQMAERTLADWNSMISG---CWKSGNETEAVVLFNMMPARNIITWT 196

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---- 120
           ++++GYAK G++E A R F+ MP R+VVSWNAM S + Q      A+  F +M       
Sbjct: 197 SMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITP 256

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  +    +S     G+   A  +L     +       V+    L+  + + G +E AR 
Sbjct: 257 DDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKT--ALLDMHAKFGNLEIARN 314

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +FD++             +RN V+WN MI  Y + G +  ARE+F+ M +RD  SWN+MI
Sbjct: 315 IFDELGS-----------QRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMI 363

Query: 241 SGYIHVLDMEEASNLFVKM-----PHPDTLTWNAMVSGYAQIGNLELA---LD------- 285
           +GY    +   +  LF +M       PD +T  +++S    IG L+L+   LD       
Sbjct: 364 AGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNI 423

Query: 286 -------------------------FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                                     F+ M  +++VS+N++I+G   N   + AIKL + 
Sbjct: 424 KLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLT 483

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAI 380
           M+ EG +PD  T+  +L+  S    L+ G  + + +     P V     ++ +  R G +
Sbjct: 484 MEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA---PTVDHYACMVDLLGRAGEL 540

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            EA+++ + M +  +   + +++     H
Sbjct: 541 DEAKMLIQSMPMKPHAGVYGSLLNASRIH 569



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 171/384 (44%), Gaps = 59/384 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           M++GY K  ++  AR+ FDEMP+R VVSWN M S Y         +EA  LF  M E   
Sbjct: 198 MVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECP---KEALNLFHQMLEEGI 254

Query: 59  --DCVTWNTVISG-----------------------------------YAKTGEMEEALR 81
             D  TW   IS                                    +AK G +E A  
Sbjct: 255 TPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARN 314

Query: 82  LFNSMPA-RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
           +F+ + + RN V+WN MIS + + G ++ A E FD MP RD  S +++++G  QNGE   
Sbjct: 315 IFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAM 374

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           +  +  +  S  D   D V    +++   G  G ++ +  + D +       E N++   
Sbjct: 375 SIELFKEMISCMDIQPDEV-TIASVLSACGHIGALKLSYWVLDIVR------EKNIKL-- 425

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
            I  +NS+I  Y+K G V  A  IF+ M  RD  S+NT+ISG+      +EA  L + M 
Sbjct: 426 GISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTME 485

Query: 261 ----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
                PD +T+  +++  +  G L    + FK +    +  +  M+       + + A  
Sbjct: 486 EEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYACMVDLLGRAGELDEAKM 545

Query: 317 LFIQMQVEGEKPDRHTFSSILSMS 340
           L   M +   KP    + S+L+ S
Sbjct: 546 LIQSMPM---KPHAGVYGSLLNAS 566



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 123/307 (40%), Gaps = 51/307 (16%)

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
           ++F   P PD   ++ M+  Y+++G     +  FK     NL                  
Sbjct: 55  SIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNL------------------ 96

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALIT 372
                        +P    +  ++ ++    +L      H  V K   I D  I NA++ 
Sbjct: 97  -------------RPQPFVYIYLIKLAGKSGNL-----FHAYVLKLGHIDDHFIRNAILD 138

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MYA+ G +  AR +FE+M   + +  WN+MI GC   G  TEA+ LF  M +  +    I
Sbjct: 139 MYAKNGQVDLARNLFEQMA-ERTLADWNSMISGCWKSGNETEAVVLFNMMPARNI----I 193

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           T+ S+++  A  G +E  R++F  M      E  +  + ++     +    ++A++L   
Sbjct: 194 TWTSMVTGYAKMGDLESARRYFDEMP-----ERSVVSWNAMQSAYAQKECPKEALNLFHQ 248

Query: 493 MPFE---PDKAVWGALLGACRVHNNVELAQVAAEAL-MKVEPENSTPYVLLYNMYADVGR 548
           M  E   PD   W   + +C    +  LA      +  K    NS     L +M+A  G 
Sbjct: 249 MLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGN 308

Query: 549 WDDANEV 555
            + A  +
Sbjct: 309 LEIARNI 315


>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
          Length = 696

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 210/628 (33%), Positives = 315/628 (50%), Gaps = 89/628 (14%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG- 69
           +A AR++FDE+P+RD VSWN +++   +   SG   EA  L   M  +   + NT   G 
Sbjct: 43  LAAARRVFDEVPRRDEVSWNALLA---AQAASGAHPEAWRLLRAMHAQGLAS-NTFALGS 98

Query: 70  ---------------------------------------YAKTGEMEEALRLFNSMPARN 90
                                                  YAK G + +A ++F+ MP RN
Sbjct: 99  ALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERN 158

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGE------LDEAARV 144
            VSWNA+I+G+ ++GD+A+A+E F  M     A   A  + L+   E      + +    
Sbjct: 159 TVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAVEGPSCFLMHQLHGK 218

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
           +VK GS        +   N  I  Y Q G ++++R++FD I        G++R   +++S
Sbjct: 219 IVKYGSALG-----LTVLNAAITAYSQCGSLKDSRRIFDGI--------GDIR---DLIS 262

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLER-----DTFSWNTMISG------------YIHVL 247
           WN+M+  Y   G    A + F +M++      D +S+ ++IS              IH L
Sbjct: 263 WNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGL 322

Query: 248 DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
            ++ A  L    P  + L   AM + Y +   +E A   F  +  K+ VSWNSM+ G   
Sbjct: 323 VIKSA--LEGVTPVCNALI--AMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQ 378

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPI 366
           +     A+K F  M  E  + D + FS+ L  SS +  L LG QIH +V  +    +  +
Sbjct: 379 HGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFV 438

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
           +++LI MY++ G I +AR  FEE     + V WNAMI G A HG A     LF  M   K
Sbjct: 439 SSSLIFMYSKSGIIDDARKSFEEADK-SSSVPWNAMIFGYAQHGQAENVDILFNEMLQRK 497

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
               +ITF+ ++++C+HAGLV+EG +   +M  +YG+  R+EH+A  VD+ GR G+L+ A
Sbjct: 498 APLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKA 557

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
             LI  MPFEPD  VW  LLGACR+H NVELA   A  L   EP   + YVLL +MY+ +
Sbjct: 558 KKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGL 617

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           G W D   V+ +MK   + K  G+SW++
Sbjct: 618 GMWSDRATVQRVMKKRGLSKVPGWSWIE 645



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 141/519 (27%), Positives = 236/519 (45%), Gaps = 67/519 (12%)

Query: 94  WNAMISGFLQNG--DVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSR 151
           WN +++ + ++    +A A   FD +P RD  S +AL++    +G   EA R+L     R
Sbjct: 28  WNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLL-----R 82

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
               + L  A NT  +G   R      R        +     G      N+ + ++++  
Sbjct: 83  AMHAQGL--ASNTFALGSALRSAAVARRPAIGAQLQSLALKSG---LANNVFAASALLDV 137

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW 267
           YAK G V  AR++F+ M ER+T SWN +I+GY    DM  A  LF++M      PD  T+
Sbjct: 138 YAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATF 197

Query: 268 ----------------------------------NAMVSGYAQIGNLELALDFFKRMPQ- 292
                                             NA ++ Y+Q G+L+ +   F  +   
Sbjct: 198 ASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDI 257

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQ-MQVEGEKPDRHTFSSIL-SMSSGIVDLHLGM 350
           ++L+SWN+M+     N   + A+K F++ MQ  G  PD ++F+SI+ S S    D H G 
Sbjct: 258 RDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGR 317

Query: 351 QIHQMVTKTVIPDV-PINNALITMYARCGA---IVEARIIFEEMKLLKNVVSWNAMIGGC 406
            IH +V K+ +  V P+ NALI MY R      + +A   F  + +LK+ VSWN+M+ G 
Sbjct: 318 VIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSL-VLKDTVSWNSMLTGY 376

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
           + HG + +AL+ F+ M S  V      F + L + +   +++ G+Q    +V   G    
Sbjct: 377 SQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQ-IHGLVIHSGFASN 435

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV---WGALLGACRVHNNVELAQVA-A 522
               +SL+ +  + G ++DA    +    E DK+    W A++     H   E   +   
Sbjct: 436 DFVSSSLIFMYSKSGIIDDARKSFE----EADKSSSVPWNAMIFGYAQHGQAENVDILFN 491

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
           E L +  P +   +V L    +  G  D+ +E+   M++
Sbjct: 492 EMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMET 530



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 117/470 (24%), Positives = 203/470 (43%), Gaps = 87/470 (18%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-----FLE---------EARY 50
           Y K   +  AR++FD MP+R+ VSWN +I+GY  S         FLE         EA +
Sbjct: 138 YAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATF 197

Query: 51  --LFDIMPERDC-------------------VTWNTVISGYAKTGEMEEALRLFNSM-PA 88
             L   +    C                      N  I+ Y++ G ++++ R+F+ +   
Sbjct: 198 ASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDI 257

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELDEAAR 143
           R+++SWNAM+  +  NG    A++FF RM        D  S ++++S   ++G  D   R
Sbjct: 258 RDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGR 317

Query: 144 VL--VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
           V+  +   S  +G   +  A   +   Y +   +E+A K F+ + +            ++
Sbjct: 318 VIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVL------------KD 365

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERD------TFSWNTMISGYIHVLDMEE---- 251
            VSWNSM+  Y++ G    A + F  M   +       FS     S  + VL + +    
Sbjct: 366 TVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHG 425

Query: 252 -------ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
                  ASN FV          ++++  Y++ G ++ A   F+   + + V WN+MI G
Sbjct: 426 LVIHSGFASNDFVS---------SSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFG 476

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQI-HQMVTKTVI 361
              +   E    LF +M       D  TF  +++  S  G+VD   G +I + M TK  +
Sbjct: 477 YAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVD--EGSEILNTMETKYGV 534

Query: 362 PDVPINNAL-ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           P    + A  + +Y R G + +A+ + + M    + + W  ++G C  HG
Sbjct: 535 PLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHG 584



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 12/127 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I  Y K   +  ARK F+E  +   V WN MI GY      G  E    LF+ M +R  
Sbjct: 442 LIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQ---HGQAENVDILFNEMLQRKA 498

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV-----SWNAMISGFLQNGDVANAI 111
             D +T+  +I+  +  G ++E   + N+M  +  V      +   +  + + G +  A 
Sbjct: 499 PLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAK 558

Query: 112 EFFDRMP 118
           +  D MP
Sbjct: 559 KLIDSMP 565


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 198/618 (32%), Positives = 316/618 (51%), Gaps = 67/618 (10%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEA------------- 48
           + G+V+   M  A  +F++M   D   WNV+I GY ++   G  +EA             
Sbjct: 65  LCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNN---GLFQEAIDFYYRMECEGIR 121

Query: 49  --------------------------RYLFDIMPERDCVTWNTVISGYAKTGEMEEALRL 82
                                       L  I  + D    N +I  Y K G +E A ++
Sbjct: 122 SDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKV 181

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-DSASLSALVSGLIQNGELDEA 141
           F+ MP R++VSWN+M+SG+  +GD  +++  F  M    + A    ++S L     ++  
Sbjct: 182 FDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISAL-GACSIEHC 240

Query: 142 AR--VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
            R  + + C       E  +    +LI  YG+ G+V+ A ++F++I            + 
Sbjct: 241 LRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRI------------YS 288

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
           +NIV+WN+MI    +   V+        +L   + S   +    IH   +        KM
Sbjct: 289 KNIVAWNAMIGGMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIR-------KM 341

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
             P  +   A+V  Y + G L+LA   F +M +KN+VSWN+M+A    N+ Y+ A+K+F 
Sbjct: 342 FLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQ 401

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCG 378
            +  E  KPD  T +S+L   + +     G QIH  + K  +  +  I+NA++ MYA+CG
Sbjct: 402 HILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCG 461

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
            +  AR  F+ M + K+VVSWN MI   A HGF   +++ F  MR     P   TF+S+L
Sbjct: 462 DLQTAREFFDGM-VCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLL 520

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           +AC+ +GL++EG   F SM  EYGI+P IEH+  ++D++GR+G L++A   I+ MP  P 
Sbjct: 521 TACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPT 580

Query: 499 KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558
             +WG+LL A R HN+V LA++AA  ++ ++ +N+  YVLL NMYA+ GRW+D + ++ L
Sbjct: 581 ARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYL 640

Query: 559 MKSNNIKKPTGYSWVDFS 576
           MK   + K  G S VD +
Sbjct: 641 MKEQGLVKTVGCSMVDIN 658



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 198/472 (41%), Gaps = 72/472 (15%)

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAA 142
           F  +   N ++    + GF+++G + NA++ F++M   D+   + ++ G   NG   EA 
Sbjct: 50  FKPLARPNDLNITRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAI 109

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
               +    C+G       +  +I   G+   +   +K+  K+          + F  ++
Sbjct: 110 DFYYR--MECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLI--------KIGFDLDV 159

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI------------------ 244
              N +I  Y K G +  A ++F++M  RD  SWN+M+SGY                   
Sbjct: 160 YVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRL 219

Query: 245 -------------------HVL--DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
                              H L   ME    +       D +   +++  Y + G ++ A
Sbjct: 220 GNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYA 279

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK--PDRHTFSSILSMSS 341
              F R+  KN+V+WN+MI G                MQ E +K  PD  T  ++L   S
Sbjct: 280 ERVFNRIYSKNIVAWNAMIGG----------------MQ-EDDKVIPDVITMINLLPSCS 322

Query: 342 GIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
               L  G  IH   + K  +P + +  AL+ MY +CG +  A  +F +M   KN+VSWN
Sbjct: 323 QSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMN-EKNMVSWN 381

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
            M+     +    EAL++F+ + +  + P  IT  SVL A A      EG+Q   S + +
Sbjct: 382 TMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQ-IHSYIMK 440

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
            G+        ++V +  + G L+ A +   GM  + D   W  ++ A  +H
Sbjct: 441 LGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCK-DVVSWNTMIMAYAIH 491



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 127/260 (48%), Gaps = 6/260 (2%)

Query: 251 EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
           ++   F  +  P+ L     + G+ + G +  ALD F++M   +   WN +I G   N  
Sbjct: 45  QSKTSFKPLARPNDLNITRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGL 104

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNA 369
           ++ AI  + +M+ EG + D  TF  ++     ++ L +G ++H  + K     DV + N 
Sbjct: 105 FQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNF 164

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           LI MY + G I  A  +F+EM  ++++VSWN+M+ G    G    +L  FK M       
Sbjct: 165 LIDMYLKIGFIELAEKVFDEMP-VRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKA 223

Query: 430 TYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
                IS L AC+    +  G + H + + +E  ++  ++   SL+D+ G+ G+++ A  
Sbjct: 224 DRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQ--TSLIDMYGKCGKVDYAER 281

Query: 489 LIKGMPFEPDKAVWGALLGA 508
           +   + +  +   W A++G 
Sbjct: 282 VFNRI-YSKNIVAWNAMIGG 300



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 163/381 (42%), Gaps = 97/381 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           +I  Y+K   +  A K+FDEMP RD+VSWN M+SGY                        
Sbjct: 165 LIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKAD 224

Query: 37  ----ISSRGSGFLEEA-RYLFDIMP-------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
               IS+ G+  +E   R   +I         E D +   ++I  Y K G+++ A R+FN
Sbjct: 225 RFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFN 284

Query: 85  SMPARNVVSWNAMISGFLQNGDV-ANAIEFFDRMPG-RDSASL----------------- 125
            + ++N+V+WNAMI G  ++  V  + I   + +P    S +L                 
Sbjct: 285 RIYSKNIVAWNAMIGGMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLP 344

Query: 126 -----SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
                +ALV    + GEL  A  V  +        E  + ++NT++  Y Q  + +EA K
Sbjct: 345 YLVLETALVDMYGKCGELKLAEHVFNQM------NEKNMVSWNTMVAAYVQNEQYKEALK 398

Query: 181 LFDKI---PVNCD----------------RGEG--------NVRFKRNIVSWNSMIMCYA 213
           +F  I   P+  D                R EG         +    N    N+++  YA
Sbjct: 399 MFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYA 458

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGY-IHVL---DMEEASNLFVKMPHPDTLTWNA 269
           K GD+ +ARE F+ M+ +D  SWNTMI  Y IH      ++  S +  K   P+  T+ +
Sbjct: 459 KCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVS 518

Query: 270 MVSGYAQIGNLELALDFFKRM 290
           +++  +  G ++    FF  M
Sbjct: 519 LLTACSISGLIDEGWGFFNSM 539


>gi|302790816|ref|XP_002977175.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
 gi|300155151|gb|EFJ21784.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
          Length = 806

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 172/526 (32%), Positives = 295/526 (56%), Gaps = 33/526 (6%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------ 117
           N +IS Y + G+++EALR+F  MP RNVVSW +MI+   Q+G  + A++ FD M      
Sbjct: 288 NALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDGMIAEGIN 347

Query: 118 PGRDS-ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           P   + AS+ + ++ L ++  LD   ++  +  +     + +V+  N+LI  Y + G + 
Sbjct: 348 PNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQ--NSLINMYARSGLLA 405

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----D 232
           EAR++FD I  N           + +VS+ +MI  YA  G    A EIF +M  R    +
Sbjct: 406 EAREVFDSILEN----------SKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAPN 455

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKM-----PHPDTLTWNAMVSGYAQIGNLELALDFF 287
             ++ T+++  + + D+   + +  +M        D   +N++V  YA+ G+L  A   F
Sbjct: 456 EITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVF 515

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
           + M  K+LV+W ++IA    + +   A+ L+ +M   G  PD  T S++L   + + DL 
Sbjct: 516 ETMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLA 575

Query: 348 LGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           +G +IH+   ++ +  D    NAL  MYA+CG++ +A  ++   +   +V +W +M+   
Sbjct: 576 MGEKIHRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRG-SDVATWTSMLAAH 634

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
           +  G A+ ALEL+  M S  V P  +TFI VL +C+ AGLV EGR+ F S+ ++YG +P 
Sbjct: 635 SQQGLASVALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEGREFFHSITSDYGSQPS 694

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM 526
            EHF  +VD++GR G+L DA +L+  MPF PD+  W +LL +C++H + E+   AAE L+
Sbjct: 695 AEHFGCMVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCKLHTDAEIGTRAAECLL 754

Query: 527 KVEPENSTPYVLLYNMYADVGRWDDANEVR---LLMKSNNIKKPTG 569
           +++PE+++ +V L  +YA  GR  D +E++    L +   + + TG
Sbjct: 755 ELDPESTSQFVALSQIYAAAGRNSDIDEIKRELALRRQIEVHRTTG 800



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 137/471 (29%), Positives = 221/471 (46%), Gaps = 41/471 (8%)

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           R+ +    V   YA+    + A+ LF++MP R    WN ++  FL      + +E + RM
Sbjct: 83  RNALLGELVFQMYARCRCFDTAIALFDAMPDRRPFCWNVLMKEFLAADRPRDTLELYRRM 142

Query: 118 PGRDSA-SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT-LIVGYGQRGRV 175
              ++  S    +  ++  G + + A+       R   G  +  +  + L+  Y Q GR+
Sbjct: 143 SVENTQPSACGFMWAIVACGRIKDLAQGR-SIHYRVATGRGINSSIQSALVTMYAQCGRI 201

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
           + A   FD      +R  G          WN+++   A AG    A E+F QM +     
Sbjct: 202 DLAMAAFDD-----NRELGTA-------PWNAIMSALAGAGHHRRAIELFFQMEQHQCSD 249

Query: 236 WNTM-----------ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
            +             + G I + D  ++     ++     L  NA++S Y + G L+ AL
Sbjct: 250 RSCAIALGACAAAGHLRGGIQIHDKIQS-----EIHGTRVLVLNALISMYVRCGKLDEAL 304

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI- 343
             F  MP +N+VSW SMIA    +  Y  A+KLF  M  EG  P+  T++S++S  + + 
Sbjct: 305 RVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDGMIAEGINPNEKTYASVVSAIAHLG 364

Query: 344 --VDLHLGMQIHQMVTKTVIPDVPI-NNALITMYARCGAIVEARIIFEE-MKLLKNVVSW 399
               L  G +IH  +T + I   PI  N+LI MYAR G + EAR +F+  ++  K VVS+
Sbjct: 365 RDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAEAREVFDSILENSKTVVSF 424

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
             MI   A +G   +ALE+F+ M +  V P  ITF +VL+AC   G +  G    + M+ 
Sbjct: 425 TTMIAAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMI- 483

Query: 460 EYGIEPRIEHFA--SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           E G++   + FA  SLVD+  + G L  A  + + M  + D   W  ++ A
Sbjct: 484 ESGLDSS-DPFAYNSLVDMYAKCGDLGFAARVFETMKTK-DLVAWTTIIAA 532



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 103/470 (21%), Positives = 209/470 (44%), Gaps = 80/470 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
           +IS YV+  ++ +A ++F +MP R+VVSW  MI+       SG    A  LFD      I
Sbjct: 290 LISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQ---SGHYSFAVKLFDGMIAEGI 346

Query: 55  MP------------------------------------ERDCVTWNTVISGYAKTGEMEE 78
            P                                    + D +  N++I+ YA++G + E
Sbjct: 347 NPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAE 406

Query: 79  ALRLFNSM--PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA----SLSALVSGL 132
           A  +F+S+   ++ VVS+  MI+ +  NG    A+E F  M  R  A    + + +++  
Sbjct: 407 AREVFDSILENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAAC 466

Query: 133 IQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           +  G+L   A +   +++ G   D  +    AYN+L+  Y + G +  A ++F+ +    
Sbjct: 467 VAIGDLASGAWIHERMIESG--LDSSDPF--AYNSLVDMYAKCGDLGFAARVFETMKT-- 520

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIH 245
                     +++V+W ++I    ++G+  +A +++++ML+     D  + +T++    +
Sbjct: 521 ----------KDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACAN 570

Query: 246 VLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           + D+     +  +        D    NA+ + YA+ G+LE A   ++R    ++ +W SM
Sbjct: 571 LGDLAMGEKIHRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVATWTSM 630

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV- 360
           +A          A++L+ +M+ EG +P+  TF  +L   S    +  G +    +T    
Sbjct: 631 LAAHSQQGLASVALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEGREFFHSITSDYG 690

Query: 361 -IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
             P       ++ +  R G + +A  + + M    + ++W +++  C  H
Sbjct: 691 SQPSAEHFGCMVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCKLH 740



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 146/335 (43%), Gaps = 40/335 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS------RGSGFLEEARYLFDI 54
           MI+ Y       +A ++F EM  R V    +  +  +++        SG     R +   
Sbjct: 427 MIAAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESG 486

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
           +   D   +N+++  YAK G++  A R+F +M  +++V+W  +I+  +Q+G+   A++ +
Sbjct: 487 LDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRAALDLY 546

Query: 115 DRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG 170
           DRM       D A+LS L+      G+L    ++  +   R    +D     N L   Y 
Sbjct: 547 DRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIH-RQALRSKLEQD-AHFQNALAAMYA 604

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
           + G +E+A +L+ +      RG        ++ +W SM+  +++ G    A E++ +M E
Sbjct: 605 KCGSLEKATRLYRRC-----RGS-------DVATWTSMLAAHSQQGLASVALELYAEM-E 651

Query: 231 RDTFSWNTMISGYIHVLD-------MEEASNLFVKM-----PHPDTLTWNAMVSGYAQIG 278
            +    N +   +I VL        + E    F  +       P    +  MV    + G
Sbjct: 652 SEGVRPNEVT--FIPVLISCSQAGLVAEGREFFHSITSDYGSQPSAEHFGCMVDVLGRAG 709

Query: 279 NLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
            L  A +    MP   + ++W S+++ C+ + D E
Sbjct: 710 KLRDAEELLDSMPFYPDEIAWQSLLSSCKLHTDAE 744



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 7/189 (3%)

Query: 333 FSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
           ++++L        L  G ++H  +V++ +  +  +   +  MYARC     A  +F+ M 
Sbjct: 53  YANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIALFDAMP 112

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             +    WN ++    +     + LEL++ M      P+   F+  + AC     + +GR
Sbjct: 113 -DRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVACGRIKDLAQGR 171

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM---DLIKGMPFEPDKAVWGALLGA 508
                +    GI   I+  ++LV +  + GR++ AM   D  + +   P  A+  AL GA
Sbjct: 172 SIHYRVATGRGINSSIQ--SALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGA 229

Query: 509 CRVHNNVEL 517
                 +EL
Sbjct: 230 GHHRRAIEL 238


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 188/621 (30%), Positives = 319/621 (51%), Gaps = 61/621 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +++ YVK   +  AR++ +EMP +DV  WN  +S   S+     L+EA  LF +M     
Sbjct: 30  LVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLS---SANSPYPLQEAVQLFYLMRHTRI 86

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPA----RNVVSWNAMISGFLQNGDVANAIE 112
             +   + ++IS  A  G+      +   +       +++  NA ++ +++   V N  +
Sbjct: 87  RLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQ 146

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
           FF  M   + AS + L+SG       D+  R+L++     +G E  +  + +++     +
Sbjct: 147 FFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQL--LVEGFEPNMYTFISILKTCASK 204

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           G + E + +  ++  +    + ++        WNS++  YAK G    A ++F ++ ERD
Sbjct: 205 GDLNEGKAIHGQVIKSGINPDSHL--------WNSLVNVYAKCGSANYACKVFGEIPERD 256

Query: 233 TFSWNTMISGYI---HVLDMEEASNLFVKMPHPDTLTW---------------------- 267
             SW  +I+G++   +   +   + +  +  +P+  T+                      
Sbjct: 257 VVSWTALITGFVAEGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQ 316

Query: 268 -------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
                         A+V  YA+   LE A   F R+ +++L +W  ++AG   +   E A
Sbjct: 317 IVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKA 376

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITM 373
           +K FIQMQ EG KP+  T +S LS  S I  L  G Q+H M  K     D+ + +AL+ M
Sbjct: 377 VKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDM 436

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           YA+CG + +A ++F+ + + ++ VSWN +I G + HG   +AL+ F++M     +P  +T
Sbjct: 437 YAKCGCVEDAEVVFDGL-VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVT 495

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           FI VLSAC+H GL+EEG++HF S+   YGI P IEH+A +VDI+GR G+  +    I+ M
Sbjct: 496 FIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEM 555

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
               +  +W  +LGAC++H N+E  + AA  L ++EPE  + Y+LL NM+A  G WDD  
Sbjct: 556 KLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVT 615

Query: 554 EVRLLMKSNNIKKPTGYSWVD 574
            VR LM +  +KK  G SWV+
Sbjct: 616 NVRALMSTRGVKKEPGCSWVE 636



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 115/506 (22%), Positives = 212/506 (41%), Gaps = 81/506 (16%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD--- 115
           D   W+++++ Y K   ++ A ++   MP ++V  WN  +S       +  A++ F    
Sbjct: 23  DSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMR 82

Query: 116 ----RMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
               R+     ASL +  + L  N   +     + K G   D     +   N  +  Y +
Sbjct: 83  HTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESD-----ILISNAFVTMYMK 137

Query: 172 RGRVEEARKLFDKIPV-----------------NCDRG---------EGNVRFKRNIVSW 205
              VE   + F  + +                  CD+G         EG   F+ N+ ++
Sbjct: 138 TQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEG---FEPNMYTF 194

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
            S++   A  GD+   + I  Q+++     D+  WN++++ Y        A  +F ++P 
Sbjct: 195 ISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 254

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            D ++W A+++G+   G                                Y   +++F QM
Sbjct: 255 RDVVSWTALITGFVAEG--------------------------------YGSGLRIFNQM 282

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAI 380
             EG  P+ +TF SIL   S + D+ LG Q+H Q+V  ++  +  +  AL+ MYA+   +
Sbjct: 283 LAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFL 342

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
            +A  IF  + + +++ +W  ++ G A  G   +A++ F  M+   V P   T  S LS 
Sbjct: 343 EDAETIFNRL-IKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSG 401

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C+    ++ GRQ   SM  + G    +   ++LVD+  + G +EDA  +  G+    D  
Sbjct: 402 CSRIATLDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL-VSRDTV 459

Query: 501 VWGALLGACRVHNNVELAQVAAEALM 526
            W  ++     H     A  A EA++
Sbjct: 460 SWNTIICGYSQHGQGGKALKAFEAML 485



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 119/246 (48%), Gaps = 4/246 (1%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           PD+  W+++V+ Y +  +L+ A    + MP +++  WN  ++   +    + A++LF  M
Sbjct: 22  PDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLM 81

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAI 380
           +    + ++  F+S++S ++ + D H G  IH  V K     D+ I+NA +TMY +  ++
Sbjct: 82  RHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSV 141

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
                 F+ M +++N+ S N ++ G        +   +   +      P   TFIS+L  
Sbjct: 142 ENGWQFFKAM-MIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKT 200

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           CA  G + EG+      V + GI P    + SLV++  + G    A  +   +P E D  
Sbjct: 201 CASKGDLNEGKA-IHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP-ERDVV 258

Query: 501 VWGALL 506
            W AL+
Sbjct: 259 SWTALI 264



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 99/232 (42%), Gaps = 7/232 (3%)

Query: 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           I +++   + PD  + ++L+ +Y +C ++  AR + EEM  +++V  WN  +    S   
Sbjct: 12  IFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMP-IQDVQQWNQKLSSANSPYP 70

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             EA++LF  MR  ++      F S++SA A  G    G +   + V +YG E  I    
Sbjct: 71  LQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYG-ESIHACVCKYGFESDILISN 129

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
           + V +  +   +E+     K M  E   +    L G C      +  ++  + L++    
Sbjct: 130 AFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEP 189

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD----FSPCG 579
           N   ++ +    A  G  ++   +   +  + I  P  + W      ++ CG
Sbjct: 190 NMYTFISILKTCASKGDLNEGKAIHGQVIKSGI-NPDSHLWNSLVNVYAKCG 240


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 210/628 (33%), Positives = 315/628 (50%), Gaps = 89/628 (14%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG- 69
           +A AR++FDE+P+RD VSWN +++   +   SG   EA  L   M  +   + NT   G 
Sbjct: 43  LAAARRVFDEVPRRDEVSWNALLA---AQAASGAHPEAWRLLRAMHAQGLAS-NTFALGS 98

Query: 70  ---------------------------------------YAKTGEMEEALRLFNSMPARN 90
                                                  YAK G + +A ++F+ MP RN
Sbjct: 99  ALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERN 158

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGE------LDEAARV 144
            VSWNA+I+G+ ++GD+A+A+E F  M     A   A  + L+   E      + +    
Sbjct: 159 TVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAVEGPSCFLMHQLHGK 218

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
           +VK GS        +   N  I  Y Q G ++++R++FD I        G++R   +++S
Sbjct: 219 IVKYGSALG-----LTVLNAAITAYSQCGSLKDSRRIFDGI--------GDIR---DLIS 262

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLER-----DTFSWNTMISG------------YIHVL 247
           WN+M+  Y   G    A + F +M++      D +S+ ++IS              IH L
Sbjct: 263 WNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGL 322

Query: 248 DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
            ++ A  L    P  + L   AM + Y +   +E A   F  +  K+ VSWNSM+ G   
Sbjct: 323 VIKSA--LEGVTPVCNALI--AMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQ 378

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPI 366
           +     A+K F  M  E  + D + FS+ L  SS +  L LG QIH +V  +    +  +
Sbjct: 379 HGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFV 438

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
           +++LI MY++ G I +AR  FEE     + V WNAMI G A HG A     LF  M   K
Sbjct: 439 SSSLIFMYSKSGIIDDARKSFEEADK-SSSVPWNAMIFGYAQHGQAENVDILFNEMLQRK 497

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
               +ITF+ ++++C+HAGLV+EG +   +M  +YG+  R+EH+A  VD+ GR G+L+ A
Sbjct: 498 APLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKA 557

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
             LI  MPFEPD  VW  LLGACR+H NVELA   A  L   EP   + YVLL +MY+ +
Sbjct: 558 KKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGL 617

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           G W D   V+ +MK   + K  G+SW++
Sbjct: 618 GMWSDRATVQRVMKKRGLSKVPGWSWIE 645



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 141/519 (27%), Positives = 236/519 (45%), Gaps = 67/519 (12%)

Query: 94  WNAMISGFLQNG--DVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSR 151
           WN +++ + ++    +A A   FD +P RD  S +AL++    +G   EA R+L     R
Sbjct: 28  WNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLL-----R 82

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
               + L  A NT  +G   R      R        +     G      N+ + ++++  
Sbjct: 83  AMHAQGL--ASNTFALGSALRSAAVARRPAIGAQLQSLALKSG---LANNVFAASALLDV 137

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW 267
           YAK G V  AR++F+ M ER+T SWN +I+GY    DM  A  LF++M      PD  T+
Sbjct: 138 YAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATF 197

Query: 268 ----------------------------------NAMVSGYAQIGNLELALDFFKRMPQ- 292
                                             NA ++ Y+Q G+L+ +   F  +   
Sbjct: 198 ASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDI 257

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQ-MQVEGEKPDRHTFSSIL-SMSSGIVDLHLGM 350
           ++L+SWN+M+     N   + A+K F++ MQ  G  PD ++F+SI+ S S    D H G 
Sbjct: 258 RDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGR 317

Query: 351 QIHQMVTKTVIPDV-PINNALITMYARCGA---IVEARIIFEEMKLLKNVVSWNAMIGGC 406
            IH +V K+ +  V P+ NALI MY R      + +A   F  + +LK+ VSWN+M+ G 
Sbjct: 318 VIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSL-VLKDTVSWNSMLTGY 376

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
           + HG + +AL+ F+ M S  V      F + L + +   +++ G+Q    +V   G    
Sbjct: 377 SQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQ-IHGLVIHSGFASN 435

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV---WGALLGACRVHNNVELAQVA-A 522
               +SL+ +  + G ++DA    +    E DK+    W A++     H   E   +   
Sbjct: 436 DFVSSSLIFMYSKSGIIDDARKSFE----EADKSSSVPWNAMIFGYAQHGQAENVDILFN 491

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
           E L +  P +   +V L    +  G  D+ +E+   M++
Sbjct: 492 EMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMET 530



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 117/470 (24%), Positives = 203/470 (43%), Gaps = 87/470 (18%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-----FLE---------EARY 50
           Y K   +  AR++FD MP+R+ VSWN +I+GY  S         FLE         EA +
Sbjct: 138 YAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATF 197

Query: 51  --LFDIMPERDC-------------------VTWNTVISGYAKTGEMEEALRLFNSM-PA 88
             L   +    C                      N  I+ Y++ G ++++ R+F+ +   
Sbjct: 198 ASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDI 257

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELDEAAR 143
           R+++SWNAM+  +  NG    A++FF RM        D  S ++++S   ++G  D   R
Sbjct: 258 RDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGR 317

Query: 144 VL--VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
           V+  +   S  +G   +  A   +   Y +   +E+A K F+ + +            ++
Sbjct: 318 VIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVL------------KD 365

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERD------TFSWNTMISGYIHVLDMEE---- 251
            VSWNSM+  Y++ G    A + F  M   +       FS     S  + VL + +    
Sbjct: 366 TVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHG 425

Query: 252 -------ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
                  ASN FV          ++++  Y++ G ++ A   F+   + + V WN+MI G
Sbjct: 426 LVIHSGFASNDFVS---------SSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFG 476

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQI-HQMVTKTVI 361
              +   E    LF +M       D  TF  +++  S  G+VD   G +I + M TK  +
Sbjct: 477 YAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVD--EGSEILNTMETKYGV 534

Query: 362 PDVPINNAL-ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           P    + A  + +Y R G + +A+ + + M    + + W  ++G C  HG
Sbjct: 535 PLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHG 584



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 12/127 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I  Y K   +  ARK F+E  +   V WN MI GY      G  E    LF+ M +R  
Sbjct: 442 LIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQ---HGQAENVDILFNEMLQRKA 498

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV-----SWNAMISGFLQNGDVANAI 111
             D +T+  +I+  +  G ++E   + N+M  +  V      +   +  + + G +  A 
Sbjct: 499 PLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAK 558

Query: 112 EFFDRMP 118
           +  D MP
Sbjct: 559 KLIDSMP 565


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 184/554 (33%), Positives = 288/554 (51%), Gaps = 97/554 (17%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N ++  YAK G+++ A  LF  M  R +  WN+MISG  ++G+   A+  F+ MP R+  
Sbjct: 134 NAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARN-- 191

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
                                              +  + +++ GY + G +E AR+ FD
Sbjct: 192 -----------------------------------IITWTSMVTGYAKMGDLESARRYFD 216

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTM 239
           ++P            +R++VSWN+M   YA+      A  +F QMLE     D  +W   
Sbjct: 217 EMP------------ERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVT 264

Query: 240 ISGYIHV----------------------------LDM-------EEASNLFVKM-PHPD 263
           IS    +                            LDM       E A N+F ++    +
Sbjct: 265 ISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRN 324

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM-Q 322
            +TWN M+S Y ++G L LA + F  MP++++VSWNSMIAG   N +   +I+LF +M  
Sbjct: 325 AVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMIS 384

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARCGAIV 381
               +PD  T +S+LS    I  L L   +  +V  K +   +   N+LI MY++CG++ 
Sbjct: 385 CMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVA 444

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
           +A  IF+ M   ++VVS+N +I G A++G   EA++L  +M    + P ++T+I VL+AC
Sbjct: 445 DAHRIFQTMGT-RDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTAC 503

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
           +HAGL+ EG+  FKS+       P ++H+A +VD++GR G L++A  LI+ MP +P   V
Sbjct: 504 SHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGV 558

Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
           +G+LL A R+H  V L ++AA  L ++EP+N   YVLL N+YA  GRW+D   VR +MK 
Sbjct: 559 YGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKK 618

Query: 562 NNIKKPTGYSWVDF 575
             +KK  G SWV++
Sbjct: 619 GGLKKSVGMSWVEY 632



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 213/449 (47%), Gaps = 63/449 (14%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y K  ++  AR LF++M +R +  WN MISG      SG   EA  LF++MP R+ +TW 
Sbjct: 140 YAKNGQVDLARNLFEQMAERTLADWNSMISG---CWKSGNETEAVVLFNMMPARNIITWT 196

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---- 120
           ++++GYAK G++E A R F+ MP R+VVSWNAM S + Q      A+  F +M       
Sbjct: 197 SMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITP 256

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  +    +S     G+   A  +L     +       V+    L+  + + G +E AR 
Sbjct: 257 DDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKT--ALLDMHAKFGNLEIARN 314

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +FD++             +RN V+WN MI  Y + G +  ARE+F+ M +RD  SWN+MI
Sbjct: 315 IFDELGS-----------QRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMI 363

Query: 241 SGYIHVLDMEEASNLFVKM-----PHPDTLTWNAMVSGYAQIGNLELA---LD------- 285
           +GY    +   +  LF +M       PD +T  +++S    IG L+L+   LD       
Sbjct: 364 AGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNI 423

Query: 286 -------------------------FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                                     F+ M  +++VS+N++I+G   N   + AIKL + 
Sbjct: 424 KLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLT 483

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAI 380
           M+ EG +PD  T+  +L+  S    L+ G  + + +     P V     ++ +  R G +
Sbjct: 484 MEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA---PTVDHYACMVDLLGRAGEL 540

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            EA+++ + M +  +   + +++     H
Sbjct: 541 DEAKMLIQSMPMKPHAGVYGSLLNASRIH 569



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 171/384 (44%), Gaps = 59/384 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           M++GY K  ++  AR+ FDEMP+R VVSWN M S Y         +EA  LF  M E   
Sbjct: 198 MVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECP---KEALNLFHQMLEEGI 254

Query: 59  --DCVTWNTVISG-----------------------------------YAKTGEMEEALR 81
             D  TW   IS                                    +AK G +E A  
Sbjct: 255 TPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARN 314

Query: 82  LFNSMPA-RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
           +F+ + + RN V+WN MIS + + G ++ A E FD MP RD  S +++++G  QNGE   
Sbjct: 315 IFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAM 374

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           +  +  +  S  D   D V    +++   G  G ++ +  + D +       E N++   
Sbjct: 375 SIELFKEMISCMDIQPDEV-TIASVLSACGHIGALKLSYWVLDIVR------EKNIKL-- 425

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
            I  +NS+I  Y+K G V  A  IF+ M  RD  S+NT+ISG+      +EA  L + M 
Sbjct: 426 GISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTME 485

Query: 261 ----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
                PD +T+  +++  +  G L    + FK +    +  +  M+       + + A  
Sbjct: 486 EEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYACMVDLLGRAGELDEAKM 545

Query: 317 LFIQMQVEGEKPDRHTFSSILSMS 340
           L   M +   KP    + S+L+ S
Sbjct: 546 LIQSMPM---KPHAGVYGSLLNAS 566



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 169/411 (41%), Gaps = 74/411 (18%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           D F  N ++  Y     ++ A NLF +M       WN+M+SG  + GN   A+  F  MP
Sbjct: 129 DHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMP 188

Query: 292 QKNLVSWNSMIAGCETNKDYEG-------------------------------AIKLFIQ 320
            +N+++W SM+ G     D E                                A+ LF Q
Sbjct: 189 ARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQ 248

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARCGA 379
           M  EG  PD  T+   +S  S I D  L   I +M+  K ++ +  +  AL+ M+A+ G 
Sbjct: 249 MLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGN 308

Query: 380 IVEARIIFEEMKLLKN-------------------------------VVSWNAMIGGCAS 408
           +  AR IF+E+   +N                               VVSWN+MI G A 
Sbjct: 309 LEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQ 368

Query: 409 HGFATEALELFKSMRS-FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
           +G +  ++ELFK M S   + P  +T  SVLSAC H G ++        +V E  I+  I
Sbjct: 369 NGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVL-DIVREKNIKLGI 427

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
             F SL+ +  + G + DA  + + M    D   +  L+     + +    + A + ++ 
Sbjct: 428 SGFNSLIFMYSKCGSVADAHRIFQTMGTR-DVVSFNTLISGFAANGH---GKEAIKLVLT 483

Query: 528 VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFSPC 578
           +E E   P  + Y     +G     +   LL +  N+ K      VD   C
Sbjct: 484 MEEEGIEPDHVTY-----IGVLTACSHAGLLNEGKNVFKSIQAPTVDHYAC 529



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 122/307 (39%), Gaps = 51/307 (16%)

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
           ++F   P PD   ++ M+  Y+++G     +  FK     NL                  
Sbjct: 55  SIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNL------------------ 96

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALIT 372
                        +P    +  ++ ++        G   H  V K   I D  I NA++ 
Sbjct: 97  -------------RPQPFVYIYLIKLAGKS-----GNMFHAYVLKLGHIDDHFIRNAILD 138

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MYA+ G +  AR +FE+M   + +  WN+MI GC   G  TEA+ LF  M +  +    I
Sbjct: 139 MYAKNGQVDLARNLFEQMA-ERTLADWNSMISGCWKSGNETEAVVLFNMMPARNI----I 193

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           T+ S+++  A  G +E  R++F  M      E  +  + ++     +    ++A++L   
Sbjct: 194 TWTSMVTGYAKMGDLESARRYFDEMP-----ERSVVSWNAMQSAYAQKECPKEALNLFHQ 248

Query: 493 MPFE---PDKAVWGALLGACRVHNNVELAQVAAEAL-MKVEPENSTPYVLLYNMYADVGR 548
           M  E   PD   W   + +C    +  LA      +  K    NS     L +M+A  G 
Sbjct: 249 MLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGN 308

Query: 549 WDDANEV 555
            + A  +
Sbjct: 309 LEIARNI 315


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 164/525 (31%), Positives = 294/525 (56%), Gaps = 25/525 (4%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E+D       IS       +  +  +F+ + + +   WN+++SG+       + I  + R
Sbjct: 58  EQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVR 117

Query: 117 MPGRDSA----SLSALVSGLIQNGELDEAARVLVKCGS--RCDGGEDLVRAYNTLIVGYG 170
           M   D A    +  +L+      G++ E    +   GS  RC   ED +    +L+  YG
Sbjct: 118 MKREDGAPDRYTFPSLLKVCASEGKMMEG---MALHGSILRCGVDED-IYVTTSLVNLYG 173

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
           + G ++ ARK+FD +             +RN+VSW +MI+ Y+  G++V A+ +F+ M E
Sbjct: 174 KGGLIDCARKVFDGMS------------ERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPE 221

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRM 290
           R+  SWN +I GY+ + D++ A   F +MP  + +++  M+ GYA+ G++  A + F++ 
Sbjct: 222 RNVASWNAIIGGYMKMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKA 281

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
           P++++++W+++I+G   N     A+K F++M     KPD+   +S++   S + +L L  
Sbjct: 282 PERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAK 341

Query: 351 QIHQMVTKTVIP--DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
            +    T+  +      +  ALI M A+CG +  A  +FE+M   ++++S+ +++ G + 
Sbjct: 342 WVDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPK-RDLISYCSVMQGLSI 400

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           HG   +A+ LF+ M    + P  + F  +L+AC+ AGLV+EG  +F+ M  +Y + P ++
Sbjct: 401 HGHGDQAVSLFERMLGEDLTPDDVAFTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVD 460

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528
           H+A +VD++ R GRL++A +LIK +P +     WGALLGAC+++ + ELA+V A  L+++
Sbjct: 461 HYACIVDLLSRSGRLKEAYELIKSVPVQSHAGAWGALLGACKLYCDSELAEVVASRLIEI 520

Query: 529 EPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           EPEN+  YVLL N+YA   RW D + VR  M    ++K  G SW+
Sbjct: 521 EPENAGNYVLLSNIYAAADRWLDVSAVRNQMNERGLRKIPGCSWI 565



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 153/284 (53%), Gaps = 16/284 (5%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           ARK+FD M +R+VVSW  MI GY S    G L EA+ LFD+MPER+  +WN +I GY K 
Sbjct: 181 ARKVFDGMSERNVVSWTAMIVGYSSI---GNLVEAKRLFDLMPERNVASWNAIIGGYMKM 237

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI 133
           G+++ A + F+ MP +NVVS+  MI G+ + GD+ +A   F + P RD  + SAL+SG  
Sbjct: 238 GDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYT 297

Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
           QNG+ +EA +  ++  SR    +  V    +L++   Q G ++ A K  D     C    
Sbjct: 298 QNGQPNEAVKTFLEMSSRNVKPDKFV--LTSLMLACSQLGNLDLA-KWVDSYATRCSVDL 354

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEAS 253
                   ++  N      AK G++  A  +FE+M +RD  S+ +++ G       ++A 
Sbjct: 355 RGAHVTAALIDMN------AKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAV 408

Query: 254 NLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           +LF +M      PD + +  +++  ++ G ++    +F+ M  K
Sbjct: 409 SLFERMLGEDLTPDDVAFTVILTACSRAGLVDEGWHYFEMMRCK 452



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 167/330 (50%), Gaps = 34/330 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI GY     + +A++LFD MP+R+V SWN +I GY+     G ++ A   FD MPE++ 
Sbjct: 199 MIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMK---MGDVKSAEKAFDEMPEKNV 255

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V++ T+I GYAK G+M  A  LF   P R++++W+A+ISG+ QNG    A++ F  M  R
Sbjct: 256 VSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSR 315

Query: 121 ----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT--LIVGYGQRGR 174
               D   L++L+    Q G LD  A+ +    +RC    DL  A+ T  LI    + G 
Sbjct: 316 NVKPDKFVLTSLMLACSQLGNLD-LAKWVDSYATRC--SVDLRGAHVTAALIDMNAKCGN 372

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT- 233
           +E A  LF+K+P            KR+++S+ S++   +  G    A  +FE+ML  D  
Sbjct: 373 MERAMYLFEKMP------------KRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLT 420

Query: 234 ---FSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALD 285
               ++  +++       ++E  + F  M       P    +  +V   ++ G L+ A +
Sbjct: 421 PDDVAFTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVDHYACIVDLLSRSGRLKEAYE 480

Query: 286 FFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
             K +P Q +  +W +++  C+   D E A
Sbjct: 481 LIKSVPVQSHAGAWGALLGACKLYCDSELA 510



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 204/448 (45%), Gaps = 73/448 (16%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYIS--------------SRGSGFLEEARYLFDIM 55
            ++ +  +FD +       WN ++SGY +               R  G  +  RY F  +
Sbjct: 76  HISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKREDGAPD--RYTFPSL 133

Query: 56  ------------------------PERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNV 91
                                    + D     ++++ Y K G ++ A ++F+ M  RNV
Sbjct: 134 LKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCARKVFDGMSERNV 193

Query: 92  VSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSR 151
           VSW AMI G+   G++  A   FD MP R+ AS +A++ G ++ G++  A +        
Sbjct: 194 VSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKMGDVKSAEKAFD----- 248

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
            +  E  V ++ T+I GY + G +  AR LF K P            +R+I++W+++I  
Sbjct: 249 -EMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAP------------ERDIIAWSALISG 295

Query: 212 YAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHV--LDMEEASNLFVKMPHPD-- 263
           Y + G    A + F +M  R    D F   +++     +  LD+ +  + +      D  
Sbjct: 296 YTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYATRCSVDLR 355

Query: 264 -TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
                 A++   A+ GN+E A+  F++MP+++L+S+ S++ G   +   + A+ LF +M 
Sbjct: 356 GAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERML 415

Query: 323 VEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMV--TKTVIPDVPINNALITMYARCG 378
            E   PD   F+ IL+  S  G+VD   G    +M+    +++P V     ++ + +R G
Sbjct: 416 GEDLTPDDVAFTVILTACSRAGLVD--EGWHYFEMMRCKYSMVPSVDHYACIVDLLSRSG 473

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGC 406
            + EA  + + + +  +  +W A++G C
Sbjct: 474 RLKEAYELIKSVPVQSHAGAWGALLGAC 501



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 139/314 (44%), Gaps = 24/314 (7%)

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           ++L  K    D+      +S    + ++  +   F R+   +   WNS+++G      + 
Sbjct: 50  AHLIQKGLEQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFV 109

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALI 371
             I L+++M+ E   PDR+TF S+L + +    +  GM +H  + +  V  D+ +  +L+
Sbjct: 110 DIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLV 169

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            +Y + G I  AR +F+ M   +NVVSW AMI G +S G   EA  LF  M    V    
Sbjct: 170 NLYGKGGLIDCARKVFDGMS-ERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNV---- 224

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
            ++ +++      G V+   + F  M      E  +  F +++D   + G +  A +L +
Sbjct: 225 ASWNAIIGGYMKMGDVKSAEKAFDEMP-----EKNVVSFTTMIDGYAKAGDMLSARNLFQ 279

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP--YVLLYNMYA----- 544
             P E D   W AL+     +        A +  +++   N  P  +VL   M A     
Sbjct: 280 KAP-ERDIIAWSALISG---YTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLG 335

Query: 545 --DVGRWDDANEVR 556
             D+ +W D+   R
Sbjct: 336 NLDLAKWVDSYATR 349


>gi|297818116|ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322779|gb|EFH53200.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 652

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 199/614 (32%), Positives = 307/614 (50%), Gaps = 71/614 (11%)

Query: 16  KLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVT------------- 62
           +LFDEMPQRD VSWN MISGY S    G LE +  LF  M    C               
Sbjct: 2   RLFDEMPQRDSVSWNTMISGYTSC---GKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIA 58

Query: 63  --------------------------WNTVISGYAKTGEMEEALRLFNSMPARNVVSWNA 96
                                      ++++  YAK   +E+A   F  +   N VSWNA
Sbjct: 59  SAKRFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNA 118

Query: 97  MISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELDEAARVLVKCGSR 151
           +I+GF+Q  D   A      M  +     D  + + L++ L      +   +V  K    
Sbjct: 119 LIAGFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLDDPMFCNLLKQVHAKVLKL 178

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
             G E  +   N +I  Y   G V +A+++FD        G G     ++++SWNSMI  
Sbjct: 179 --GLEHEITICNAMISSYANCGLVSDAKRVFD--------GLGG---SKDLISWNSMIAG 225

Query: 212 YAKAGDVVSAREIFEQM----LERDTFSWNTMIS---GYIHVLDMEEASNLFVKMPHPD- 263
            +K     SA E+F +M    +E D +++  ++S   G  H    +    L +K      
Sbjct: 226 LSKHEQKESAFELFTEMHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQV 285

Query: 264 TLTWNAMVSGYAQI--GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           T   NA++S Y Q   G ++ AL  F+ +  K+LVSWNS++ G   N   E A+K F  +
Sbjct: 286 TSVSNALISMYIQFPTGVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYL 345

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAI 380
           +    + D + FS++L   S +  L LG Q H + TK+    +  + ++LI MY++CG I
Sbjct: 346 RSSNIEVDDYAFSAVLRSCSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVI 405

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
             AR  FE++    N ++WNAMI G A HG    +L+LF  M +  V   ++TF ++L+A
Sbjct: 406 ENARKCFEQISSKHNTIAWNAMILGYAQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTA 465

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C+H GL++EG +   SM   Y I+PR+EH+A+ VD++GR G +    +LI+ MP  PD  
Sbjct: 466 CSHTGLIQEGLELLNSMEPVYKIQPRMEHYAAAVDLLGRAGLVNKVKELIESMPLNPDPM 525

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
           V    LG CR    +E+A   A  L+++EPE+   YV L +MY+D+ +W++   V+ +MK
Sbjct: 526 VLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFAYVSLSHMYSDLKKWEEKANVKKMMK 585

Query: 561 SNNIKKPTGYSWVD 574
              +KK  G+SW++
Sbjct: 586 ERGVKKVPGWSWIE 599


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 188/660 (28%), Positives = 323/660 (48%), Gaps = 102/660 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++   ++R +++ ARK++DEMP ++ VS N MISG++ +   G +  AR LFD MP+R  
Sbjct: 54  IVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT---GDVSSARDLFDAMPDRTV 110

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM------------------PARN------------ 90
           VTW  ++  YA+    +EA +LF  M                  P  N            
Sbjct: 111 VTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVH 170

Query: 91  -------------VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGE 137
                        +   N ++  + +   +  A   F+ +P +DS + + L++G  ++G 
Sbjct: 171 AFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGL 230

Query: 138 LDEAARVLVKCGSRCDGGEDLV---------------------------------RAYNT 164
             E+  + +K         D                                      N 
Sbjct: 231 YTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQ 290

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           ++  Y +  RV E R LFD++P            + + VS+N +I  Y++A    ++   
Sbjct: 291 ILDFYSKHDRVLETRMLFDEMP------------ELDFVSYNVVISSYSQADQYEASLHF 338

Query: 225 FEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVK--MPHPDTL--TWNAMVSGYAQ 276
           F +M     +R  F + TM+S   ++  ++    L  +  +   D++    N++V  YA+
Sbjct: 339 FREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAK 398

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
               E A   FK +PQ+  VSW ++I+G      +   +KLF +M+    + D+ TF+++
Sbjct: 399 CEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATV 458

Query: 337 LSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           L  S+    L LG Q+H  + ++  + +V   + L+ MYA+CG+I +A  +FEEM   +N
Sbjct: 459 LKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRN 517

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
            VSWNA+I   A +G    A+  F  M    + P  ++ + VL+AC+H G VE+G ++F+
Sbjct: 518 AVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQ 577

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
           +M   YGI P+ +H+A ++D++GR+GR  +A  L+  MPFEPD+ +W ++L ACR+H N 
Sbjct: 578 AMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQ 637

Query: 516 ELAQVAAEALMKVEP-ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            LA+ AAE L  +E   ++  YV + N+YA  G W+   +V+  M+   IKK   YSWV+
Sbjct: 638 SLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVE 697



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 132/282 (46%), Gaps = 10/282 (3%)

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
           V AR I +   + DT   N ++   +    +  A  ++ +MPH +T++ N M+SG+ + G
Sbjct: 35  VDAR-IIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTG 93

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM--QVEGEKPDRHTFSSI 336
           ++  A D F  MP + +V+W  ++     N  ++ A KLF QM        PD  TF+++
Sbjct: 94  DVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTL 153

Query: 337 LSMSSGIVDLHLGMQIHQMVTK---TVIPDVPINNALITMYARCGAIVEARIIFEEMKLL 393
           L   +  V  +   Q+H    K      P + ++N L+  Y     +  A ++FEE+   
Sbjct: 154 LPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIP-E 212

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ- 452
           K+ V++N +I G    G  TE++ LF  MR     P+  TF  VL A         G+Q 
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQL 272

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           H  S+   +  +  + +   ++D   +H R+ +   L   MP
Sbjct: 273 HALSVTTGFSRDASVGN--QILDFYSKHDRVLETRMLFDEMP 312


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 195/627 (31%), Positives = 321/627 (51%), Gaps = 74/627 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y+K  +    R +FDEM  ++VVSW  ++SGY  +   G  +E  +L + M     
Sbjct: 145 LVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARN---GLNDEVIHLINQMQMEGV 201

Query: 57  -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                                              E      N +I  Y K+  + +A  
Sbjct: 202 NPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEA 261

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP-GRDSASLSALVSGL---IQNGE 137
           +F+SM  R+ V+WN MI G+   G      + F RM       S +   + L    Q  E
Sbjct: 262 VFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRE 321

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           L+   ++   CG   +G E        L+V Y +   V+EA KLF               
Sbjct: 322 LNFTKQL--HCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADA---------- 369

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG----YIHVLDM 249
              N+V+W +MI  + +  +   A ++F QM    +  + F+++T+++G     +  L  
Sbjct: 370 -AHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHA 428

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           +     + K+P   T    A++  Y + GN+  +   F  +P K++V+W++M+ G    +
Sbjct: 429 QIIKAYYEKVPSVAT----ALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTR 484

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSIL-SMSSGIVDLHLGMQIHQMVTKTVIPD-VPIN 367
           D E A+++FIQ+  EG KP+ +TFSS++ + SS    +  G QIH    K+   + + ++
Sbjct: 485 DSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVS 544

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           +AL+TMY++ G I  A  +F   +  +++VSWN+MI G   HG A +ALE+F+ M++  +
Sbjct: 545 SALLTMYSKKGNIESAEKVFTRQEE-RDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGL 603

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
               +TFI VL+AC HAGLVEEG ++F  M+ +Y I+ +IEH++ +VD+  R G  + AM
Sbjct: 604 PLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAM 663

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
           D+I GMPF     +W  LL ACRVH N+EL ++AAE L+ ++P ++  YVLL N++A  G
Sbjct: 664 DIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAG 723

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVD 574
            W++   VR LM    +KK  G SW++
Sbjct: 724 NWEEKAHVRKLMDERKVKKEAGCSWIE 750



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 138/556 (24%), Positives = 239/556 (42%), Gaps = 72/556 (12%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGY---------------ISSRGSGF--------LEEARY 50
           A +LFDE P +D+  +N ++  +               + S G G         L+    
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 51  LFDIMPER-------------DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM 97
           LFD +  R             D     +++  Y KT + E+   +F+ M  +NVVSW ++
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 98  ISGFLQNGDVANAIEFFDRMP--GRDSASLS-ALVSGLIQNGELDEAARVLVKCGSRCDG 154
           +SG+ +NG     I   ++M   G +    + A V G + +  + E   V V      +G
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGG-VQVHAMIVKNG 235

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
            E      N LI  Y +   V +A  +FD + V            R+ V+WN MI  YA 
Sbjct: 236 FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVV------------RDSVTWNIMIGGYAA 283

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT-------- 266
            G  +   ++F +M         T+    + +   +   N F K  H   +         
Sbjct: 284 IGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELN-FTKQLHCGVVKNGYEFAQD 342

Query: 267 -WNAMVSGYAQIGNLELALDFFKRM-PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
              A++  Y++  +++ A   F       N+V+W +MI G   N + E A+ LF QM  E
Sbjct: 343 IRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSRE 402

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEA 383
           G +P+  T+S++L+         L  Q+H  + K     VP +  AL+  Y + G +VE+
Sbjct: 403 GVRPNHFTYSTVLAGKPS----SLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVES 458

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC-A 442
             +F  +   K++V+W+AM+ G A    + +A+E+F  +    V P   TF SV++AC +
Sbjct: 459 ARVFYSIP-AKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSS 517

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
            A  VE G+Q   + V   G    +   ++L+ +  + G +E A  +      E D   W
Sbjct: 518 SAATVEHGKQIHATAVKS-GKSNALCVSSALLTMYSKKGNIESAEKVFTRQE-ERDIVSW 575

Query: 503 GALLGACRVHNNVELA 518
            +++     H + + A
Sbjct: 576 NSMITGYGQHGDAKKA 591



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 19/218 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +++ Y K+  +  A K+F    +RD+VSWN MI+GY      G  ++A  +F IM  +  
Sbjct: 547 LLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGY---GQHGDAKKALEVFQIMQNQGL 603

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPA-----RNVVSWNAMISGFLQNGDVANAI 111
             D VT+  V++     G +EE  + FN M       + +  ++ M+  + + G    A+
Sbjct: 604 PLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAM 663

Query: 112 EFFDRMPGRDSASL-SALVSG--LIQNGELDE-AARVLVKCGSRCDGGEDLVRAYNTLIV 167
           +  + MP   S ++   L++   + +N EL + AA  LV        G  L+   + +  
Sbjct: 664 DIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAG 723

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
            + ++  V   RKL D+  V  + G   +  K  I S+
Sbjct: 724 NWEEKAHV---RKLMDERKVKKEAGCSWIEIKNRIFSF 758


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 200/671 (29%), Positives = 315/671 (46%), Gaps = 160/671 (23%)

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISG-------------- 100
           MP+R+ V+WNTVI+  A++G   EAL ++  M    +   N  ++               
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 60

Query: 101 ----------------FLQNG---------DVANAIEFFDRMPGRDSASLSALVSGLIQN 135
                           F++NG          VA+A+  FD MP  +  S +A++ GL Q 
Sbjct: 61  RRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQG 120

Query: 136 GELDEAAR-------------------VLVKCGSRCDGGEDLVRA--------------- 161
           G +D+A R                   VL  C   C G  ++ RA               
Sbjct: 121 GAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKG 180

Query: 162 --------------------------------------YNTLIVGYGQRGRVEEARKLFD 183
                                                 +N LI GYGQ G  E A ++ +
Sbjct: 181 FGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLE 240

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
            +  +         F+ N V++++M+    KA DV SAR +F+++ +    +WNT++SGY
Sbjct: 241 FMQES--------GFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGY 292

Query: 244 IHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLEL----------------- 282
                 +E  +LF +M H    PD  T   ++S  +++GN EL                 
Sbjct: 293 GQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDM 352

Query: 283 ------------------ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
                             AL  F  M ++++V WNSMI+G   +   E A     QM+  
Sbjct: 353 FVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMREN 412

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEA 383
           G  P   +++S++++ + +  +  G Q+H  V K     +V +  +LI MYA+ G + +A
Sbjct: 413 GMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDA 472

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
           R+ F  M ++KN+V+WN MI G A +GF  +A+ELF+ M + K  P  +TFI+VL+ C+H
Sbjct: 473 RLFFNCM-IVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSH 531

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           +GLV+E    F SM + YGI P +EH+  L+D + R  R  +   +I  MP++ D  +W 
Sbjct: 532 SGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWE 591

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
            LL AC VH+N EL + +A+ L +++P+N +PYVLL N+YA +GR  DA+ VR LM S  
Sbjct: 592 VLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRG 651

Query: 564 IKKPTGYSWVD 574
           + K  GYSWV+
Sbjct: 652 VVKGRGYSWVN 662


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 210/638 (32%), Positives = 322/638 (50%), Gaps = 86/638 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-------D 53
           ++S + K   ++ ARK+F++M  R+ V+ N ++ G +  +   + EEA  LF       D
Sbjct: 249 LVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQK---WGEEATKLFMDMNSMID 305

Query: 54  IMPERDCVTW-------------------------------------NTVISGYAKTGEM 76
           + PE   +                                       N +++ YAK G +
Sbjct: 306 VSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSI 365

Query: 77  EEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS-ALVSGLIQN 135
            +A R+F  M  ++ VSWN+MI+G  QNG    A+E +  M   D    S  L+S L   
Sbjct: 366 ADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSC 425

Query: 136 GELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
             L  A       G     G DL V   N L+  Y + G + E RK+F  +P        
Sbjct: 426 ASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP-------- 477

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE------------QMLERDTFSWNTMISG 242
               + + VSWNS+I   A+     S R + E            Q L R TFS       
Sbjct: 478 ----EHDQVSWNSIIGALAR-----SERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVS 528

Query: 243 YIHVLDM-EEASNLFVKMPHPD-TLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWN 299
            +   ++ ++   L +K    D   T NA+++ Y + G ++     F RM ++ + V+WN
Sbjct: 529 SLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWN 588

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           SMI+G   N+    A+ L   M   G++ D   ++++LS  + +  L  GM++H    + 
Sbjct: 589 SMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRA 648

Query: 360 VI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
            +  DV + +AL+ MY++CG +  A   F  M + +N  SWN+MI G A HG   EAL+L
Sbjct: 649 CLESDVVVGSALVDMYSKCGRLDYALRFFNTMPV-RNSYSWNSMISGYARHGQGEEALKL 707

Query: 419 FKSMR-SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           F++M+   +  P ++TF+ VLSAC+HAGL+EEG +HF+SM + YG+ PRIEHF+ + D++
Sbjct: 708 FETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVL 767

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN--NVELAQVAAEALMKVEPENSTP 535
           GR G L+   D I+ MP +P+  +W  +LGAC   N    EL + AAE L ++EPEN+  
Sbjct: 768 GRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVN 827

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           YVLL NMYA  GRW+D  + R  MK  ++KK  GYSWV
Sbjct: 828 YVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWV 865



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 152/511 (29%), Positives = 237/511 (46%), Gaps = 64/511 (12%)

Query: 16  KLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGE 75
           +L+     +DV   N +I+ Y+ +  S     AR +FD MP R+CV+W  ++SGY++ GE
Sbjct: 26  RLYKNRLDKDVYLCNNLINAYLETGDS---VSARKVFDEMPLRNCVSWACIVSGYSRNGE 82

Query: 76  MEEALRLFNSMPARNVVS-WNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQ 134
            +EAL     M    + S   A +S      ++ +    F R        LS  V  ++ 
Sbjct: 83  HKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVS 142

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           N        VL+    +C G            VGY        A   F  I V       
Sbjct: 143 N--------VLISMYWKCIGS-----------VGY--------ALCAFGDIEV------- 168

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML---ERDT-FSWNTMISGYIHVL--D 248
                +N VSWNS+I  Y++AGD  SA  IF  M     R T +++ ++++    +   D
Sbjct: 169 -----KNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPD 223

Query: 249 MEEASNLFVKMPHPDTLT----WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           +     +   +     LT     + +VS +A+ G+L  A   F +M  +N V+ N ++ G
Sbjct: 224 VRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVG 283

Query: 305 CETNKDYEGAIKLFIQMQVEGE-KPDRHT--FSSILSMS-SGIVDLHLGMQIHQMVTKTV 360
               K  E A KLF+ M    +  P+ +    SS    S +  V L  G ++H  V  T 
Sbjct: 284 LVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTG 343

Query: 361 IPD--VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
           + D  V I N L+ MYA+CG+I +AR +F  M   K+ VSWN+MI G   +G   EA+E 
Sbjct: 344 LVDFMVGIGNGLVNMYAKCGSIADARRVFYFMT-DKDSVSWNSMITGLDQNGCFIEAVER 402

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIV 477
           +KSMR   +LP   T IS LS+CA     + G+Q H +S+  + GI+  +    +L+ + 
Sbjct: 403 YKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESL--KLGIDLNVSVSNALMTLY 460

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
              G L +   +   MP E D+  W +++GA
Sbjct: 461 AETGYLNECRKIFSSMP-EHDQVSWNSIIGA 490



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 135/498 (27%), Positives = 218/498 (43%), Gaps = 36/498 (7%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D    + ++S +AK+G +  A ++FN M  RN V+ N ++ G ++      A + F  M 
Sbjct: 242 DLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMN 301

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGG-------EDLVRAYNTLIVGYGQ 171
                S  + V  L    E   A  V +K G    G        + +V   N L+  Y +
Sbjct: 302 SMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAK 361

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G + +AR++F  +              ++ VSWNSMI    + G  + A E ++ M   
Sbjct: 362 CGSIADARRVFYFMT------------DKDSVSWNSMITGLDQNGCFIEAVERYKSMRRH 409

Query: 232 DTFSWN-TMISGYIHVLDMEEASNLFVKMPHPDTLTW---------NAMVSGYAQIGNLE 281
           D    + T+IS       ++ A     +  H ++L           NA+++ YA+ G L 
Sbjct: 410 DILPGSFTLISSLSSCASLKWAK--LGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLN 467

Query: 282 LALDFFKRMPQKNLVSWNSMI-AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
                F  MP+ + VSWNS+I A   + +    A+  F+  Q  G+K +R TFSS+LS  
Sbjct: 468 ECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAV 527

Query: 341 SGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           S +    LG QIH +  K  I D     NALI  Y +CG +     IF  M   ++ V+W
Sbjct: 528 SSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTW 587

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N+MI G   +    +AL+L   M           + +VLSA A    +E G +     V 
Sbjct: 588 NSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVR 647

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
              +E  +   ++LVD+  + GRL+ A+     MP     + W +++     H   E A 
Sbjct: 648 AC-LESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYS-WNSMISGYARHGQGEEAL 705

Query: 520 VAAEALMKVEPENSTPYV 537
              E  MK++ +    +V
Sbjct: 706 KLFET-MKLDGQTPPDHV 722



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 138/300 (46%), Gaps = 11/300 (3%)

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           S L+      D    N +++ Y + G+   A   F  MP +N VSW  +++G   N +++
Sbjct: 25  SRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHK 84

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTK-TVIPDVPINNA 369
            A+     M  EG   +++ F S+L      G V +  G QIH ++ K +   D  ++N 
Sbjct: 85  EALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNV 144

Query: 370 LITMYARC-GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           LI+MY +C G++  A   F +++ +KN VSWN++I   +  G    A  +F SM+     
Sbjct: 145 LISMYWKCIGSVGYALCAFGDIE-VKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSR 203

Query: 429 PTYITFIS-VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
           PT  TF S V +AC+         +     + + G+   +   + LV    + G L  A 
Sbjct: 204 PTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYAR 263

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE--ALMKVEPENSTPYVLLYNMYAD 545
            +   M       + G ++G  R     E  ++  +  +++ V PE+   YV+L + + +
Sbjct: 264 KVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPES---YVILLSSFPE 320


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 189/555 (34%), Positives = 294/555 (52%), Gaps = 65/555 (11%)

Query: 67  ISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DS 122
            S  +++G++  A+ LFNS+   N+  WN+MI G   +   A A+ FF RM       +S
Sbjct: 70  FSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNS 129

Query: 123 ASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            +   L+    +     E  ++   ++K G   D     V  + +LI  Y Q G +  A+
Sbjct: 130 YTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSD-----VFIHTSLINMYAQSGEMNNAQ 184

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            +FD+               R+ +S+ ++I  YA  G +  AR++F++M  +D  SWN M
Sbjct: 185 LVFDQSNF------------RDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAM 232

Query: 240 ISGYIHVLDMEEASNLFVKM------PHPDTL--------------------TW------ 267
           I+GY  +   +EA  LF  M      P+  T+                    +W      
Sbjct: 233 IAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGL 292

Query: 268 -------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                  NA++  Y++ G+L+ A + F  M +++++SWN MI G      Y+ A+ LF +
Sbjct: 293 CSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFRE 352

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV-IPDVPINNALITMYARCGA 379
           M   G +P   TF SIL   + +  + LG  IH  + K        ++ +LI +YA+CG 
Sbjct: 353 MLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGN 412

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           IV AR +F+ MK+ K++ SWNAMI G A HG A +A ELF  M S  + P  ITF+ +LS
Sbjct: 413 IVAARQVFDGMKI-KSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILS 471

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           AC HAGLV+ G+Q F SMV +Y I P+ +H+  ++D++GR G  E+A  L++ M  +PD 
Sbjct: 472 ACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDG 531

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
           A+WG+LLGACR H  VEL ++ AE L ++EP+N   YVLL N+YA  G+WDD   +R  +
Sbjct: 532 AIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRL 591

Query: 560 KSNNIKKPTGYSWVD 574
               +KK  G + ++
Sbjct: 592 NDRGMKKVPGCTTIE 606



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 179/410 (43%), Gaps = 85/410 (20%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D     ++I+ YA++GEM  A  +F+    R+ +S+ A+I+G+   G +  A + FD MP
Sbjct: 163 DVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMP 222

Query: 119 GRDSASLSALVSGLIQNGELDEA---------------ARVLVKCGSRCDGGEDLVRAYN 163
            +D  S +A+++G  Q G   EA                  +V   S C          N
Sbjct: 223 VKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQS-------N 275

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
            L +G   R  +E             DRG        N+   N++I  Y+K GD+ +ARE
Sbjct: 276 ALDLGNSMRSWIE-------------DRG-----LCSNLKLVNALIDMYSKCGDLQTARE 317

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSG------ 273
           +F+ MLERD  SWN MI GY H+   +EA  LF +M      P  +T+ +++        
Sbjct: 318 LFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGA 377

Query: 274 -----------------------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
                                        YA+ GN+  A   F  M  K+L SWN+MI G
Sbjct: 378 IDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICG 437

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTK--TV 360
              +   + A +LF +M  +G +P+  TF  ILS    +G+VD  LG Q    + +   +
Sbjct: 438 LAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVD--LGQQFFSSMVQDYKI 495

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            P       +I +  R G   EA  + + M++  +   W +++G C  HG
Sbjct: 496 SPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHG 545



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 178/399 (44%), Gaps = 41/399 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+GY     M +AR+LFDEMP +DVVSWN MI+GY      G  +EA  LF+ M + + 
Sbjct: 201 LIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQ---MGRSKEALLLFEDMRKANV 257

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPA--------RNVVSWNAMISGFLQNGDVANAIE 112
               + I           AL L NSM +         N+   NA+I  + + GD+  A E
Sbjct: 258 PPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARE 317

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
            FD M  RD  S + ++ G        EA  +  +  +   G E     + +++      
Sbjct: 318 LFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLA--SGVEPTEITFLSILPSCAHL 375

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           G ++  + +   I  N +          +     S+I  YAK G++V+AR++F+ M  + 
Sbjct: 376 GAIDLGKWIHAYINKNFN--------SVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKS 427

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFK 288
             SWN MI G       ++A  LF KM      P+ +T+  ++S     G ++L   FF 
Sbjct: 428 LASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFS 487

Query: 289 RMPQKNLVSWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
            M Q   +S  S   GC  +       +E A  L   M+V   KPD   + S+L    G 
Sbjct: 488 SMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEV---KPDGAIWGSLL----GA 540

Query: 344 VDLHLGMQIHQMVTKTVI---PDVPINNALIT-MYARCG 378
              H  +++ ++V + +    PD P    L++ +YA  G
Sbjct: 541 CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAG 579


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 198/632 (31%), Positives = 324/632 (51%), Gaps = 78/632 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           +++ Y K   + KA+ +F+ +  +DVVSWN +I+GY S +G+        LF  M     
Sbjct: 51  LVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGY-SQKGTVGYSFVMELFQRMRAENT 109

Query: 56  -----------------PER-----------------DCVTWNTVISGYAKTGEMEEALR 81
                            PE                  D    +++I+ Y K G M +A +
Sbjct: 110 LPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARK 169

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS--------LSAL-VSGL 132
           +F+++P RN VSW  +ISG+        A E F  M   + A         LSAL V  L
Sbjct: 170 VFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDL 229

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           +  G+        + C +  +G   +    N L+  YG+ G +++A K F+         
Sbjct: 230 VHYGKQ-------IHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFE--------- 273

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLD 248
              +   ++ ++W++MI  YA+AGD   A  +F  M     +   F++  +I+    +  
Sbjct: 274 ---LSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGA 330

Query: 249 MEEASNLF---VKMPHPDTLTW-NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           +EE   +    +K  +   + +  A+V  YA+ G+L  A   F  + + ++V W SMI+G
Sbjct: 331 LEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISG 390

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPD 363
              N + E A+ L+ +MQ+E   P   T +S+L   S +  L  G QIH Q +      +
Sbjct: 391 YAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLE 450

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           VPI +AL TMYA+CG++ +  ++F  M   +++++WNAMI G + +G   +ALELF+ +R
Sbjct: 451 VPIGSALSTMYAKCGSLEDGNLVFRRMPS-RDIMTWNAMISGLSQNGEGLKALELFEELR 509

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
                P Y+TF++VLSAC+H GLVE G+ +F+ M++E+GI PR+EH+A +VDI+ R G+L
Sbjct: 510 HGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKL 569

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
            +  + I+    +    +W  LLGACR + N EL   A E LM++  + S+ Y+LL ++Y
Sbjct: 570 HETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIY 629

Query: 544 ADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
             +GR DD   VR LMK   + K  G SW++ 
Sbjct: 630 TALGRSDDVERVRRLMKLRGVNKEPGCSWIEL 661



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 134/462 (29%), Positives = 222/462 (48%), Gaps = 40/462 (8%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANA--IEFFDRMPGRD 121
           N++++ YAK G + +A  +F S+  ++VVSWN +I+G+ Q G V  +  +E F RM   +
Sbjct: 49  NSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAEN 108

Query: 122 SASLSALVSGLIQNGELD-------EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
           +       SG+              +A  + +K  +  D     V   ++LI  Y + G 
Sbjct: 109 TLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYD-----VFVGSSLINMYCKIGC 163

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE---- 230
           + +ARK+FD IP            +RN VSW ++I  YA       A E+F  M      
Sbjct: 164 MLDARKVFDTIP------------ERNTVSWATIISGYAMERMAFEAWELFXLMRREEGA 211

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL-----TWNAMVSGYAQIGNLELALD 285
            D F + +++S  + V D+         +   + L       NA+V+ Y + G L+ AL 
Sbjct: 212 HDKFIYTSVLSA-LTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALK 270

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F+    K+ ++W++MI G     D   A+ LF  M + G KP   TF  +++  S I  
Sbjct: 271 TFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGA 330

Query: 346 LHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           L  G QIH    K      +    AL+ MYA+CG++V+AR  F+ +K   ++V W +MI 
Sbjct: 331 LEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLK-EPDIVLWTSMIS 389

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           G A +G    AL L+  M+  +++P  +T  SVL AC+    +E+G+Q   +   +YG  
Sbjct: 390 GYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQ-IHAQTIKYGFS 448

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             +   ++L  +  + G LED   + + MP   D   W A++
Sbjct: 449 LEVPIGSALSTMYAKCGSLEDGNLVFRRMP-SRDIMTWNAMI 489



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 18/188 (9%)

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARII 386
           P   +F  +L   +   DL  G  IH  + +T     V + N+L+ +YA+CG+IV+A+++
Sbjct: 8   PQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLV 67

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFA--TEALELFKSMRSFKVLPTYITFISVLSACAHA 444
           FE +   K+VVSWN +I G +  G    +  +ELF+ MR+   LP   TF  V +A + +
Sbjct: 68  FESIT-NKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSS 126

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHF------ASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
                G Q        + +  +  +F      +SL+++  + G + DA  +   +P E +
Sbjct: 127 PETFGGLQ-------AHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIP-ERN 178

Query: 499 KAVWGALL 506
              W  ++
Sbjct: 179 TVSWATII 186


>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 190/611 (31%), Positives = 315/611 (51%), Gaps = 69/611 (11%)

Query: 28  SWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP 87
           +++ M+S ++ +   G +  AR LF  MPE+  V++ T++    K G + +A+ L+   P
Sbjct: 151 TYDFMVSEHVKA---GDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCP 207

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDEAAR 143
             +V  + AMISGF++N    +A   F +M       +  +L  ++   +  GE D A  
Sbjct: 208 LHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMG 267

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN------------CDR 191
           V V    +C+  E  +  +N+LI  Y + G    AR++FD + V              D 
Sbjct: 268 V-VGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADL 326

Query: 192 GE--GNVRF-----KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE---RDTFS-WNTMI 240
           G+  G  R       RN VSW ++I  + + GD   A +++ QML    R   S +++++
Sbjct: 327 GDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVL 386

Query: 241 SG-------------YIHVLDMEEASNLFVK----------------------MPHPDTL 265
           S              + + L M  ++NLFV                       +P  +T+
Sbjct: 387 SACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTV 446

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
            WN+++SGY+  G +  A   F +MP +N VSWN+MI+G   N+ +  A+  F  M   G
Sbjct: 447 CWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASG 506

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEAR 384
             P   T SS+L   + +  L +G  +H  + K  I D + +  AL  MYA+ G +  +R
Sbjct: 507 HIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSR 566

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F +M   KN ++W AM+ G A +GFA E++ LF+ M    + P   TF+++L AC+H 
Sbjct: 567 RVFYQMPE-KNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHC 625

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           GLVE+   +F++M   +GI P+ +H+  +VD++ R G L +A +L+  +  E D + W +
Sbjct: 626 GLVEQAIHYFETM-QAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSS 684

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           LL AC  + N E+ + AA+ L ++E +N+  YVLL NMYA  G+W DA E R+LM+  ++
Sbjct: 685 LLSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASL 744

Query: 565 KKPTGYSWVDF 575
           KK  G SW+  
Sbjct: 745 KKDAGCSWLQL 755


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 204/656 (31%), Positives = 324/656 (49%), Gaps = 128/656 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y     +  ARKLFDE+ QR  + +N MI  YI+     + E  +   +++  +DC
Sbjct: 61  LVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKMYIAK--GDYFEAMKVFLEMLGSKDC 118

Query: 61  V---------------------------------------TWNTVISGYAKTGEMEEALR 81
                                                     N++++ Y   GE+EEA +
Sbjct: 119 CPDNYTYPFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARK 178

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           +F++M  ++VVSWN MI+G+ +NG    A+  F++M          + SG+    E+D A
Sbjct: 179 VFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQM----------VDSGV----EIDGA 224

Query: 142 A--RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           +   VL  CG               L VG    G VEE  K+  K               
Sbjct: 225 SVVSVLPACGY-----------LKELEVGRRVHGLVEE--KVLGK--------------- 256

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
             IVS N+++  YAK G +  AR +F+ M+ERD  SW +MI+GYI   D + A +LF  M
Sbjct: 257 -KIVS-NALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIM 314

Query: 260 P----HPDTLT----------------------W-------------NAMVSGYAQIGNL 280
                 P+++T                      W              +++  YA+   L
Sbjct: 315 QIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCL 374

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
            L+   F R  +K  V WN++++GC  NK    AI LF +M +EG + +  T +S+L   
Sbjct: 375 GLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAY 434

Query: 341 SGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKL-LKNVVS 398
             + DL     I+  + ++  + ++ +  +LI +Y++CG++  A  IF  + + ++++  
Sbjct: 435 GILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFV 494

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           W+ +I G   HG    A+ LFK M    V P  +TF SVL +C+HAG+V++G   FK M+
Sbjct: 495 WSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFML 554

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            ++   P  +H+  +VD++GR GR+++A DLIK MPF P  AVWGALLGAC +H NVEL 
Sbjct: 555 KDHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMPGHAVWGALLGACVMHENVELG 614

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +VAA  L ++EP N+  YVLL  +YA +GRW+DA  VR  M    ++K   +S ++
Sbjct: 615 EVAARWLFELEPGNTGNYVLLAKLYAALGRWEDAENVRQRMDDIGLRKAPAHSLIE 670



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 138/494 (27%), Positives = 236/494 (47%), Gaps = 46/494 (9%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR--- 120
           + +++ YA  G +  A +LF+ +  R  + +N MI  ++  GD   A++ F  M G    
Sbjct: 59  SVLVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDC 118

Query: 121 --DSASLSALVSG-----LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
             D+ +   ++       L++ G +     ++ K GS        +   N+L+  Y   G
Sbjct: 119 CPDNYTYPFVIKACSELLLVEYGRVLHGLTLVSKFGSH-------LFVLNSLLAMYMNCG 171

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----L 229
            VEEARK+FD +             ++++VSWN+MI  Y K G   +A  +F QM    +
Sbjct: 172 EVEEARKVFDAMK------------EKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGV 219

Query: 230 ERDTFSWNTMI--SGYIHVLDM-EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
           E D  S  +++   GY+  L++      L  +      +  NA+V  YA+ G+++ A   
Sbjct: 220 EIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLGKKIVSNALVDMYAKCGSMDEARLV 279

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F  M ++++VSW SMI G   N D + A+ LF  MQ+EG +P+  T + IL   + + +L
Sbjct: 280 FDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNL 339

Query: 347 HLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             G  +H  V K  +  +V +  +LI MYA+C  +  +  +F      K  V WNA++ G
Sbjct: 340 KDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTS-RKKTVPWNALLSG 398

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR--QHFKSMVNEYGI 463
           C  +  ATEA+ LFK M    V     T  S+L A    G++ + +   +  S +   G 
Sbjct: 399 CVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPA---YGILADLQPVNNINSYLMRSGF 455

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE-PDKAVWGALLGACRVHNNVELAQVAA 522
              I+   SL+DI  + G LE A  +   +P +  D  VW  ++    +H + E A    
Sbjct: 456 VSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVSLF 515

Query: 523 EALMK--VEPENST 534
           + +++  V+P + T
Sbjct: 516 KQMVQSGVKPNDVT 529



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 6/181 (3%)

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIF 387
           P    + S+L        L    Q+H  +  + +  + I + L+  YA CG +  AR +F
Sbjct: 19  PKTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGLLSIDIRSVLVATYAHCGYVHNARKLF 78

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK-VLPTYITFISVLSACAHAGL 446
           +E++  +  + +N MI    + G   EA+++F  M   K   P   T+  V+ AC+   L
Sbjct: 79  DELR-QRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLL 137

Query: 447 VEEGR-QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           VE GR  H  ++V+++G    +    SL+ +    G +E+A  +   M  E     W  +
Sbjct: 138 VEYGRVLHGLTLVSKFGSHLFV--LNSLLAMYMNCGEVEEARKVFDAMK-EKSVVSWNTM 194

Query: 506 L 506
           +
Sbjct: 195 I 195


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 192/568 (33%), Positives = 291/568 (51%), Gaps = 84/568 (14%)

Query: 28  SWNVMISGYISSRG--------SGFLEEARYLFDIMPE--RDCVTWNTVISGYAKTGEME 77
           +W  +I  Y+S           +G   +  YL  + P   + C + + V  G A   E  
Sbjct: 62  NWCHLIRSYLSQGAPREALLVYTGLRRKGVYLLGVAPLVLKACASLSIVKHGKALHAE-- 119

Query: 78  EALRLFNSMPARNVVSWNAMISGFL-----QNGDVANAIEFFDRMPGRDSASLSALVSGL 132
                      +N V ++ MI   L     + G+V ++ + FD MP R++ +        
Sbjct: 120 ---------SIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVT-------- 162

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
                                        +N +I GY   G  + A  LF+K+ +     
Sbjct: 163 -----------------------------WNAMICGYLGNGDSKSAVLLFEKMSI----- 188

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE--RDTFSWNTMISGYIHVLDME 250
                  R  V+W  MI  +A++GD  +AR  F+ +    R+  +W  M+ GY    +ME
Sbjct: 189 -------RTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEME 241

Query: 251 EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
            A  +F  MP  +   W++M+SGY + GN++ A   F R+P +NLV+WNS+I+G   N  
Sbjct: 242 AAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGF 301

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT-KTVIPDVPINNA 369
            E A++ F +MQ EG +PD  T +S+LS  S +  L  G +IH M+  K +  +  + N 
Sbjct: 302 SEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNG 361

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           L+ MYA+CG +  AR+IFE M   +N   WN+MI G A HG + EALE F  M      P
Sbjct: 362 LVDMYAKCGDLANARLIFEGMA-HRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGP 420

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
             ITF+SVLSACAH G V  G + F  M  +YG+   I+H+  L+D++GR GR+++A DL
Sbjct: 421 DEITFLSVLSACAHGGFVNAGLEIFSRM-EKYGLTTGIKHYGCLIDLLGRAGRIKEAYDL 479

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS----TPYVLLYNMYAD 545
           IK MP +P+  VWGALLGACRVH ++E+A    E ++KV+   S    + YVLL N+YA 
Sbjct: 480 IKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAA 539

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWV 573
             RW+ A ++R+ M +   +K +G S +
Sbjct: 540 SDRWEKAEKMRMEMANKGFQKTSGCSSI 567



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 207/416 (49%), Gaps = 55/416 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K   +  +RK+FD MP+R+ V+WN MI GY+   G+G  + A  LF+ M  R  
Sbjct: 135 LVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYL---GNGDSKSAVLLFEKMSIRTA 191

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPA--RNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           VTW  +I G+A++G+ E A R F+ +P+  RNVV+W  M+ G+ +N ++  A E F+ MP
Sbjct: 192 VTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMP 251

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
            R+  + S+++SG  + G + EA  +  +   R     +LV  +N+LI GY Q G  EEA
Sbjct: 252 QRNFFAWSSMISGYCKKGNVKEARSIFDRIPVR-----NLVN-WNSLISGYAQNGFSEEA 305

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTF 234
            + F K+     + EG   F+ + V+  S++   ++ G + + ++I   M    ++ + F
Sbjct: 306 LEAFGKM-----QAEG---FEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQF 357

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
             N ++  Y    D+  A  +F  M H +   WN+M+SG+A  G  + AL+FF RM   +
Sbjct: 358 VLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSH 417

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
                                          E PD  TF S+LS  +    ++ G++I  
Sbjct: 418 -------------------------------EGPDEITFLSVLSACAHGGFVNAGLEIFS 446

Query: 355 MVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            + K  +   +     LI +  R G I EA  + + M +  N V W A++G C  H
Sbjct: 447 RMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVH 502


>gi|5803274|dbj|BAA83584.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|55296350|dbj|BAD68395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125596022|gb|EAZ35802.1| hypothetical protein OsJ_20095 [Oryza sativa Japonica Group]
          Length = 763

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 191/640 (29%), Positives = 314/640 (49%), Gaps = 85/640 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+ Y     ++   ++ D +   +V  WN +ISG + +   G+   AR  FD MP R+ 
Sbjct: 142 LITMYANCGVVSCLEQVLDGVESPNVALWNALISGLVMNHRVGY---ARKAFDRMPVRNV 198

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
           V+W  +I G+    E++ A +LF  MP +N VSW  MI GF+ +   + A+E F+ +   
Sbjct: 199 VSWTAMIKGHFTAHEVDMAFQLFKLMPVKNSVSWCVMIGGFVTHEKFSEAVELFNSLMMN 258

Query: 118 ----------------PGRDSASLSALVSGL-IQNG----ELDEAARVLVKCGS------ 150
                            G  S      + GL +++G     + EA+ VL+ C S      
Sbjct: 259 GEEVTNVILVKIVNAFAGMKSIRGGRCIHGLAVKSGFAYDLVLEASLVLMYCKSLDITEA 318

Query: 151 -----RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
                + +G    V ++N ++ GY    +++EARKLFD +              R+ +SW
Sbjct: 319 RLEFDKMEGNH--VGSWNAMLCGYIYSDKIDEARKLFDSMN------------NRDKISW 364

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLER-------------------------------DTF 234
           NSMI  Y   G +  A E++ +M E+                               D  
Sbjct: 365 NSMINGYINDGRIADATELYSKMTEKSLEAATALMSWFIDNGMLDKARDMFYNMPQIDVM 424

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
           S  T++ GY+    M++A +LF  M     +T+N M+SG    G +  A   F   P ++
Sbjct: 425 SCTTLLFGYVKGGHMDDALDLFHMMQKRTVVTYNVMISGLFHQGKITEAYKLFNESPTRD 484

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
            V+W+ ++AG  TN     A++ + +M +   +P     SS++S  S    +  G Q H 
Sbjct: 485 SVTWSCLVAGLATNGLIHEALQFYKKMLLSNIRPSESVVSSLISCLSNYSMMVHGQQFHA 544

Query: 355 MVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
              K  +   + I N+LI++Y +CG ++ A+ IF+ M   ++ V+WN +I G A +    
Sbjct: 545 TTIKIGLDSHLLIQNSLISLYCKCGEMIIAQSIFDLMAK-RDKVTWNTIIHGYALNNLGQ 603

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
            A+E+F+SM   +V P  ITF+ VLSAC H  L+EE +  F +M   YGI P I H+A +
Sbjct: 604 NAVEMFESMTKAQVDPDDITFLGVLSACNHMSLLEEAKYFFNAMTCTYGILPNIMHYACM 663

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           VD+  R   +++A  L+K MPFEPD A+W +LL  CR+  N +LA+ AA  L+ ++P   
Sbjct: 664 VDLFCRKCMIKEAEGLVKSMPFEPDSAIWTSLLSGCRLTGNDKLAEHAASQLIAIDPCTK 723

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            PY+ L +++    +    + +R  +KS   +K  GYSW+
Sbjct: 724 MPYLHLISVHGLTNKSTVIDSLRSQIKSTATEKDVGYSWI 763



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 186/401 (46%), Gaps = 21/401 (5%)

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
           N +++  L+ G +  A E FD MP RD  S + +++   + G    A    ++   R  G
Sbjct: 39  NRLMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLE--MRRQG 96

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
                 +++T +    +   +E  R +   +  +C  G        N+    S+I  YA 
Sbjct: 97  FRPDHTSFSTALSACARLEALEMGRCVHGLVFKSCSSG--------NVFVGASLITMYAN 148

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
            G V    ++ + +   +   WN +ISG +    +  A   F +MP  + ++W AM+ G+
Sbjct: 149 CGVVSCLEQVLDGVESPNVALWNALISGLVMNHRVGYARKAFDRMPVRNVVSWTAMIKGH 208

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
                +++A   FK MP KN VSW  MI G  T++ +  A++LF  + + GE+       
Sbjct: 209 FTAHEVDMAFQLFKLMPVKNSVSWCVMIGGFVTHEKFSEAVELFNSLMMNGEEVTNVILV 268

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLL 393
            I++  +G+  +  G  IH +  K+    D+ +  +L+ MY +   I EAR+ F++M+  
Sbjct: 269 KIVNAFAGMKSIRGGRCIHGLAVKSGFAYDLVLEASLVLMYCKSLDITEARLEFDKME-G 327

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
            +V SWNAM+ G        EA +LF SM +       I++ S+++   + G + +  + 
Sbjct: 328 NHVGSWNAMLCGYIYSDKIDEARKLFDSMNN----RDKISWNSMINGYINDGRIADATEL 383

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           +  M      E  +E   +L+     +G L+ A D+   MP
Sbjct: 384 YSKMT-----EKSLEAATALMSWFIDNGMLDKARDMFYNMP 419


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 308/541 (56%), Gaps = 32/541 (5%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPAR-NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS 122
           +T++S Y+    + ++L +FNS+P+    ++W ++I  +  +G   +++ FF +M     
Sbjct: 43  STILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGK 102

Query: 123 ASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA- 178
                +   ++++  L +  R    +  C  R   G DL    N L+  Y +   +EE  
Sbjct: 103 YPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTC-NALMNMYSKFWSLEEVN 161

Query: 179 --RKLFD--KIPVNCDRGE------GNVRF------KRNIVSWNSMIMCYAKAG----DV 218
             +K+FD  K      + E      G++R       KR+IVSWN++I   A+ G     +
Sbjct: 162 TYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDAL 221

Query: 219 VSAREIFEQMLERDTFSWNTMI---SGYIHVLDMEEASNLFVKMPH-PDTLTWNAMVSGY 274
           +  RE+    L  D+F+ ++++   + Y+++L  +E     ++  +  D    ++++  Y
Sbjct: 222 MMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMY 281

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
           A+   ++ +   F  +PQ + +SWNS+IAGC  N  ++  +K F QM +   KP+  +FS
Sbjct: 282 AKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFS 341

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLL 393
           SI+   + +  LHLG Q+H  + ++    +V I +AL+ MYA+CG I  AR IF++M+L 
Sbjct: 342 SIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELY 401

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
            ++VSW AMI G A HG A +A+ LFK M    V P Y+ F++VL+AC+HAGLV+E  ++
Sbjct: 402 -DMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKY 460

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
           F SM  +Y I P +EH+A++ D++GR GRLE+A + I  M  EP  +VW  LL ACRVH 
Sbjct: 461 FNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHK 520

Query: 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           N+ELA+  ++ L  V+P+N   YVLL N+Y+  GRW DA ++R+ M+   +KK    SW+
Sbjct: 521 NIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWI 580

Query: 574 D 574
           +
Sbjct: 581 E 581



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 112/470 (23%), Positives = 192/470 (40%), Gaps = 76/470 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M S +    E+   +K+FDE    DV S           + S +L   R +F++MP+RD 
Sbjct: 150 MYSKFWSLEEVNTYKKVFDEGKTSDVYS--------KKEKESYYLGSLRKVFEMMPKRDI 201

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQ------NGDVANAIEFF 114
           V+WNTVISG A+ G  E+AL +   M   ++   +  +S  L       N      I  +
Sbjct: 202 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGY 261

Query: 115 DRMPGRDSASL--SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
               G D+     S+L+    +   +D++ RV        DG      ++N++I G  Q 
Sbjct: 262 AIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQH-DG-----ISWNSIIAGCVQN 315

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE----IFEQM 228
           G  +E  K F ++ +         + K N VS++S++   A    +   ++    I    
Sbjct: 316 GMFDEGLKFFQQMLI--------AKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSR 367

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
            + + F  + ++  Y    ++  A  +F KM   D ++W AM+ GYA  G+   A+  FK
Sbjct: 368 FDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFK 427

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDL 346
           R                               M+VEG KP+   F ++L+  S  G+VD 
Sbjct: 428 R-------------------------------MEVEGVKPNYVAFMAVLTACSHAGLVDE 456

Query: 347 HLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
                        +IP +    A+  +  R G + EA     +M +      W+ ++  C
Sbjct: 457 AWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAAC 516

Query: 407 ASHGFATEALELFKSMRSFKVLP----TYITFISVLSACAHAGLVEEGRQ 452
             H     A ++ K +  F V P     Y+   ++ SA   AG  ++ R+
Sbjct: 517 RVHKNIELAEKVSKKL--FTVDPQNIGAYVLLSNIYSA---AGRWKDARK 561



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 131/291 (45%), Gaps = 38/291 (13%)

Query: 251 EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNK 309
            A  L   +P P  L+   ++S Y+ +  L  +L  F  +P     ++W S+I    ++ 
Sbjct: 28  HAQILRTSLPSPSLLS--TILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHG 85

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINN 368
            +  ++  FIQM   G+ PD + F S+L   + + DL  G  +H  + +  +  D+   N
Sbjct: 86  LFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCN 145

Query: 369 ALITMYARCGAIVEA-----------------------------RIIFEEMKLLKNVVSW 399
           AL+ MY++  ++ E                              R +FE M   +++VSW
Sbjct: 146 ALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMP-KRDIVSW 204

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA-HAGLVEEGRQHFKSMV 458
           N +I G A +G   +AL + + M +  + P   T  SVL   A +  L++    H  ++ 
Sbjct: 205 NTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIR 264

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           N Y  +  I   +SL+D+  +  R++D+  +   +P + D   W +++  C
Sbjct: 265 NGYDADVFIG--SSLIDMYAKCTRVDDSCRVFYMLP-QHDGISWNSIIAGC 312



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/108 (21%), Positives = 50/108 (46%)

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           ++L   S +       Q+H  + +T +P   + + ++++Y+    + ++ +IF  +    
Sbjct: 10  TLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTILSIYSNLNLLHDSLLIFNSLPSPP 69

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
             ++W ++I    SHG    +L  F  M +    P +  F SVL +C 
Sbjct: 70  TTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCT 117


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 181/524 (34%), Positives = 279/524 (53%), Gaps = 61/524 (11%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +I  Y+K   ++ A ++F+ +P +N  SWN +IS + ++G    A    D+MP  +  
Sbjct: 53  NRLIDFYSKCDSIQSAHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPN-- 110

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
               LVS                               YN+LI G G  G  +E+  +F 
Sbjct: 111 ----LVS-------------------------------YNSLISGLGHHGFRKESLNVFK 135

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--------LERDTFS 235
            +   C     NV F     +  S++   A  G    A E+  Q+        L  +   
Sbjct: 136 TMLKQCS----NVLFDE--FTLVSLVGSCASLG----APELLRQVHGAAIIIGLNSNIII 185

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
            N +I  Y    + + + ++F +MP  D ++W +MV+ YAQ   LE A   F +M +KN 
Sbjct: 186 GNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNT 245

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           VSW ++IAG   N   + A+ LF QM+ EG  P   TF+S+LS  + +  +  G +IH  
Sbjct: 246 VSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGH 305

Query: 356 VTKTVIPDVPIN----NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           + ++   D   N    NALI MY +CG +  A  +F+ M   K++VSWN++I G A +G 
Sbjct: 306 IIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHE-KDIVSWNSLITGFAQNGH 364

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             E+L +F+ M    + P ++TF+ +LSAC H GLV EG +   SM  +YG+ PR +H+A
Sbjct: 365 GEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYA 424

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDK-AVWGALLGACRVHNNVELAQVAAEALMKVEP 530
            ++D++GR+ RLE+AM LIK  P   D   +WGALLGACR+H N++LA+ AAE L ++EP
Sbjct: 425 IMIDLLGRNNRLEEAMGLIKRAPKGSDHVGMWGALLGACRIHGNMDLARRAAEVLFQLEP 484

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+  YV++YN+YA   RWD+A +VR LM    ++K    SW++
Sbjct: 485 GNAARYVMVYNIYAAASRWDEARQVRRLMMERGLRKEAACSWIE 528



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 122/507 (24%), Positives = 209/507 (41%), Gaps = 108/507 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K   +  A K+F  +P ++  SWN++IS Y  SR SG   EA  L D MP+ + 
Sbjct: 55  LIDFYSKCDSIQSAHKVFHVLPVKNTHSWNIIISAY--SR-SGLFNEAHNLLDQMPKPNL 111

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR------------------------------- 89
           V++N++ISG    G  +E+L +F +M  +                               
Sbjct: 112 VSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVH 171

Query: 90  ----------NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELD 139
                     N++  NA+I  + + G+   +   F RMP RD  S +++V+   Q   L+
Sbjct: 172 GAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLE 231

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           +A  +  +        E    ++  LI G+ Q GR +EA  LF+++     R EG     
Sbjct: 232 DAHWLFSQM------QEKNTVSWTALIAGFAQNGRGDEALHLFEQM-----REEG---IP 277

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-------DTFSWNTMISGYIHVLDMEEA 252
            +  ++ S++   A    +   +EI   ++         + F  N +I  Y     M  A
Sbjct: 278 PSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSA 337

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           + LF  M   D ++WN++++G+AQ G+ E +L  F+RM + ++                 
Sbjct: 338 TTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADI----------------- 380

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNAL 370
                         +P+  TF  +LS       +  G++I   + K   V P       +
Sbjct: 381 --------------RPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIM 426

Query: 371 ITMYARCGAIVEAR-IIFEEMKLLKNVVSWNAMIGGCASHG---FATEALELFKSMRSFK 426
           I +  R   + EA  +I    K   +V  W A++G C  HG    A  A E+      F+
Sbjct: 427 IDLLGRNNRLEEAMGLIKRAPKGSDHVGMWGALLGACRIHGNMDLARRAAEVL-----FQ 481

Query: 427 VLP-TYITFISVLSACAHAGLVEEGRQ 452
           + P     ++ V +  A A   +E RQ
Sbjct: 482 LEPGNAARYVMVYNIYAAASRWDEARQ 508



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 144/310 (46%), Gaps = 38/310 (12%)

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           TF  N +I  Y     ++ A  +F  +P  +T +WN ++S Y++ G    A +   +MP+
Sbjct: 49  TFLANRLIDFYSKCDSIQSAHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPK 108

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQM--QVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
            NLVS+NS+I+G   +   + ++ +F  M  Q      D  T  S++   + +    L  
Sbjct: 109 PNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLR 168

Query: 351 QIH-QMVTKTVIPDVPINNALITMYARCGA------------------------------ 379
           Q+H   +   +  ++ I NALI  Y +CG                               
Sbjct: 169 QVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQAS 228

Query: 380 -IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
            + +A  +F +M+  KN VSW A+I G A +G   EAL LF+ MR   + P+  TF SVL
Sbjct: 229 RLEDAHWLFSQMQ-EKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVL 287

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA--SLVDIVGRHGRLEDAMDLIKGMPFE 496
           SACA   L+  G++    ++    I+     F   +L+D+  + G++  A  L KGM  E
Sbjct: 288 SACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGM-HE 346

Query: 497 PDKAVWGALL 506
            D   W +L+
Sbjct: 347 KDIVSWNSLI 356



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 37/217 (17%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +I  Y      G +  A  LF  M E+D V+WN++I+G+A+ G  EE+L +F  M   
Sbjct: 322 NALIDMYCKC---GQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEA 378

Query: 90  NV----VSWNAMISGFLQNGDVANAIEFFDRM-------PGRDSASLSALVSGLIQNGEL 138
           ++    V++  ++S     G V+  +   D M       P  D  ++  ++  L +N  L
Sbjct: 379 DIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAI--MIDLLGRNNRL 436

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK----LFDKIPVNCDRGEG 194
           +EA  ++     R   G D V  +  L+      G ++ AR+    LF   P N      
Sbjct: 437 EEAMGLI----KRAPKGSDHVGMWGALLGACRIHGNMDLARRAAEVLFQLEPGNA----- 487

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
                R ++ +N     YA A     AR++   M+ER
Sbjct: 488 ----ARYVMVYN----IYAAASRWDEARQVRRLMMER 516


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 189/622 (30%), Positives = 319/622 (51%), Gaps = 62/622 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGFLEE 47
           ++  Y+K   + +  ++F+ MP+++VV+W  +++G             +   R  G    
Sbjct: 141 LVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPN 200

Query: 48  ARYLFDIMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                 ++                               N++++ YAK G +E+A  +FN
Sbjct: 201 PFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFN 260

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDR---MPGRDSASLSALVSGLIQNGELDEA 141
            M  R++VSWN +++G   N     A++ F       G+ + S  A V  L  N +    
Sbjct: 261 WMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLAL 320

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
           AR L  C  +  G          L   Y + G + +A  +F     +           RN
Sbjct: 321 ARQLHSCVLK-HGFHLTGNVMTALADAYSKCGELADALNIFSMTTGS-----------RN 368

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFV 257
           +VSW ++I    + GD+  A  +F +M E     + F+++ M+   + +L  +  + +  
Sbjct: 369 VVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIK 428

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                      A+++ Y++ G+ E AL  FK + QK++V+W++M++      D EGA  L
Sbjct: 429 TNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYL 488

Query: 318 FIQMQVEGEKPDRHTFSSIL---SMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITM 373
           F +M ++G KP+  T SS++   +  S  VD   G Q H +  K    D + +++AL++M
Sbjct: 489 FNKMAIQGIKPNEFTISSVIDACACPSAGVDQ--GRQFHAISIKYRYHDAICVSSALVSM 546

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           Y+R G I  A+I+FE  +  +++VSWN+MI G A HG++ +A+E F+ M +  +    +T
Sbjct: 547 YSRKGNIDSAQIVFER-QTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVT 605

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           F++V+  C H GLV EG+Q+F SMV ++ I P +EH+A +VD+  R G+L++ M LI+ M
Sbjct: 606 FLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDM 665

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           PF     VW  LLGACRVH NVEL + +A+ L+ +EP +S+ YVLL N+YA  G+W + +
Sbjct: 666 PFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERD 725

Query: 554 EVRLLMKSNNIKKPTGYSWVDF 575
           EVR LM    +KK  G SW+  
Sbjct: 726 EVRKLMDYRKVKKEAGCSWIQI 747



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 213/442 (48%), Gaps = 43/442 (9%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR--- 120
            +++  Y K G + E + +F  MP +NVV+W ++++G       +  +  F RM      
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW 198

Query: 121 -DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            +  + ++++S +   G LD   RV    VK G R       V   N+L+  Y + G VE
Sbjct: 199 PNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSS-----VFVCNSLMNMYAKCGLVE 253

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ----MLERD 232
           +A+ +F+ +              R++VSWN+++         + A ++F +    M +  
Sbjct: 254 DAKSVFNWMET------------RDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMT 301

Query: 233 TFSWNTMISGYIHVLDMEEASNLF-VKMPHPDTLTWNAMVS---GYAQIGNLELALDFFK 288
             ++ T+I    ++  +  A  L    + H   LT N M +    Y++ G L  AL+ F 
Sbjct: 302 QSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFS 361

Query: 289 RMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
                +N+VSW ++I+GC  N D   A+ LF +M+ +   P+  T+S++L  S  I    
Sbjct: 362 MTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI---- 417

Query: 348 LGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           L  QIH  V KT    +P +  AL+  Y++ G+  +A  IF+ ++  K+VV+W+AM+   
Sbjct: 418 LPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIE-QKDVVAWSAMLSCH 476

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACA--HAGLVEEGRQHFKSMVNEYGIE 464
           A  G    A  LF  M    + P   T  SV+ ACA   AG V++GRQ F ++  +Y   
Sbjct: 477 AQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAG-VDQGRQ-FHAISIKYRYH 534

Query: 465 PRIEHFASLVDIVGRHGRLEDA 486
             I   ++LV +  R G ++ A
Sbjct: 535 DAICVSSALVSMYSRKGNIDSA 556



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 140/274 (51%), Gaps = 5/274 (1%)

Query: 250 EEASNLFVKMPHP--DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
           E+   L VK  H   +     ++V  Y + G++   ++ F+ MP+KN+V+W S++ GC  
Sbjct: 119 EQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAH 178

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPI 366
            + +   + LF +M+ EG  P+  TF+S+LS  +    L LG ++H Q V       V +
Sbjct: 179 AQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFV 238

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            N+L+ MYA+CG + +A+ +F  M+  +++VSWN ++ G   +    EAL+LF   R+  
Sbjct: 239 CNSLMNMYAKCGLVEDAKSVFNWME-TRDMVSWNTLMAGLQLNECELEALQLFHESRATM 297

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
              T  T+ +V+  CA+   +   RQ   S V ++G         +L D   + G L DA
Sbjct: 298 GKMTQSTYATVIKLCANLKQLALARQ-LHSCVLKHGFHLTGNVMTALADAYSKCGELADA 356

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           +++        +   W A++  C  + ++ LA V
Sbjct: 357 LNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVV 390



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 163/369 (44%), Gaps = 70/369 (18%)

Query: 187 VNC--DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI 244
           V C  DRGE        + +  S++  Y K G V    E+FE M +++  +W ++++G  
Sbjct: 126 VKCGHDRGE--------VSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCA 177

Query: 245 HVLDMEEASNLFVKM------PHPDTLT-------------------------------- 266
           H     E   LF +M      P+P T                                  
Sbjct: 178 HAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVF 237

Query: 267 -WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
             N++++ YA+ G +E A   F  M  +++VSWN+++AG + N+    A++LF + +   
Sbjct: 238 VCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATM 297

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEAR 384
            K  + T+++++ + + +  L L  Q+H  V K        +  AL   Y++CG + +A 
Sbjct: 298 GKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADAL 357

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF-------ISV 437
            IF      +NVVSW A+I GC  +G    A+ LF  MR  +V+P   T+       +S+
Sbjct: 358 NIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI 417

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           L    HA +++   QH           P +    +L+    + G  EDA+ + K M  + 
Sbjct: 418 LPPQIHAQVIKTNYQHI----------PFVG--TALLASYSKFGSTEDALSIFK-MIEQK 464

Query: 498 DKAVWGALL 506
           D   W A+L
Sbjct: 465 DVVAWSAML 473



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 112/265 (42%), Gaps = 19/265 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++S Y ++  +  A+ +F+    RD+VSWN MISGY      G+  +A   F  M     
Sbjct: 543 LVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQ---HGYSMKAIETFRQMEASGI 599

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
           + D VT+  VI G    G + E  + F+SM   + ++     +  M+  + + G +   +
Sbjct: 600 QMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETM 659

Query: 112 EFFDRMPGRDSASLSALVSGLI---QNGELDE-AARVLVKCGSRCDGGEDLVRAYNTLIV 167
                MP    A +   + G     +N EL + +A  L+           L+   + +  
Sbjct: 660 SLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLL---SNIYA 716

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
             G+    +E RKL D   V  + G   ++ K  + S+ +    +  +  +    ++   
Sbjct: 717 AAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIIT 776

Query: 228 MLERDTFSWNTMISGYIHVLDMEEA 252
            L++D +S NT    +    D +EA
Sbjct: 777 RLKQDGYSPNTSFVLHDIAEDQKEA 801


>gi|296082839|emb|CBI22140.3| unnamed protein product [Vitis vinifera]
          Length = 428

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 166/431 (38%), Positives = 256/431 (59%), Gaps = 19/431 (4%)

Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
           K G  C G  D +     L+  Y + G +E ARK+FD++             +RN+VSWN
Sbjct: 12  KFGFSCGG--DGIYVETALVDFYCKLGDMEIARKMFDEMA------------ERNVVSWN 57

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT 266
           SM+  Y KAGD+  A  +F+QM ER+  SWN MISG++   D++ A + F  MP  + ++
Sbjct: 58  SMLAGYLKAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVS 117

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM--QVE 324
           W  M+SGY++ G+++ A + F ++  K+L+ +N+MIA    N     A+ LF  M     
Sbjct: 118 WMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYV 177

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEA 383
             +PD  T +S++S  S + DL  G  I   + +  I  D  +  AL+ +YA+CG+I +A
Sbjct: 178 NVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKA 237

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
             +F  ++  K++V++ AMI GC  +G A +A++LF  M   ++ P  ITFI +L+A  H
Sbjct: 238 YELFHGLRK-KDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNH 296

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           AGLVEEG + F SM  +Y + P ++H+  +VD+ GR GRL++A++LIK MP +P   VWG
Sbjct: 297 AGLVEEGYRCFTSM-KKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWG 355

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
           ALL ACR+HNNVE  ++AA+   ++EP+ +    LL N+YA   RWDD   +R + K   
Sbjct: 356 ALLLACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKG 415

Query: 564 IKKPTGYSWVD 574
             K  G SW++
Sbjct: 416 FSKIPGCSWME 426



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 188/383 (49%), Gaps = 63/383 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K  +M  ARK+FDEM +R+VVSWN M++GY+ +   G +E+A  LF  MPER+ 
Sbjct: 28  LVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKA---GDMEKASSLFQQMPERNF 84

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN +ISG+ + G+++ A   F++MP +N VSW  MISG+ + GDV +A E FD++ G+
Sbjct: 85  ASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGK 144

Query: 121 DSASLSALVSGLIQNGELDEAARV-----------------LVKCGSRCDGGEDL----- 158
           D    +A+++   QN   +EA  +                 L    S C    DL     
Sbjct: 145 DLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPW 204

Query: 159 VRAY-------------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
           + +Y               L+  Y + G +++A +LF  +             K+++V++
Sbjct: 205 IESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLR------------KKDLVAY 252

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTF----SWNTMISGYIHVLDMEEASNLFVKMPH 261
            +MI+     G  + A ++F++M++   F    ++  +++ Y H   +EE    F  M  
Sbjct: 253 TAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMKK 312

Query: 262 ----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE-GAI 315
               P    +  MV  + + G L+ AL+  K MP Q +   W +++  C  + + E G I
Sbjct: 313 YNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEI 372

Query: 316 KLFIQMQVEGEKPDRHTFSSILS 338
                 ++E   PD   + S+LS
Sbjct: 373 AAQHCFELE---PDTTGYRSLLS 392



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 187/411 (45%), Gaps = 62/411 (15%)

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
            A++  + + GD+  A + FD M  R+  S +++++G ++ G++++A+ +  +   R   
Sbjct: 26  TALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKAGDMEKASSLFQQMPERN-- 83

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
                 ++N +I G+ + G ++ AR  FD +P            ++N VSW +MI  Y+K
Sbjct: 84  ----FASWNAMISGHVEFGDIDSARSFFDAMP------------QKNNVSWMTMISGYSK 127

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM--PH----PDTLTWN 268
            GDV SA E+F+Q+  +D   +N MI+ Y       EA NLF  M  P+    PD +T  
Sbjct: 128 CGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLA 187

Query: 269 AMVSG-----------------------------------YAQIGNLELALDFFKRMPQK 293
           +++S                                    YA+ G+++ A + F  + +K
Sbjct: 188 SVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKK 247

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           +LV++ +MI GC  N     AIKLF +M      P+  TF  +L+  +    +  G +  
Sbjct: 248 DLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCF 307

Query: 354 QMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
             + K  ++P V     ++ ++ R G + EA  + + M +  +   W A++  C  H   
Sbjct: 308 TSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHN-N 366

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
            E  E+  +   F++ P    + S+LS    +G   +  +  + +  E G 
Sbjct: 367 VEFGEI-AAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGF 416



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 29/202 (14%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DC 60
           Y K   + KA +LF  + ++D+V++  MI G      +G   +A  LFD M +     + 
Sbjct: 228 YAKCGSIDKAYELFHGLRKKDLVAYTAMILG---CGINGKAIDAIKLFDEMVDAQIFPNS 284

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVV----SWNAMISGFLQNGDVANAIEFFDR 116
           +T+  +++ Y   G +EE  R F SM   N+V     +  M+  F + G +  A+E    
Sbjct: 285 ITFIGLLTAYNHAGLVEEGYRCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKS 344

Query: 117 MPGRDSASLSA---LVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG-YGQR 172
           MP +  A +     L   L  N E  E A         C   E     Y +L+   Y   
Sbjct: 345 MPMQPHAGVWGALLLACRLHNNVEFGEIA------AQHCFELEPDTTGYRSLLSNIYASG 398

Query: 173 GRVEEARKL--------FDKIP 186
            R ++ ++L        F KIP
Sbjct: 399 ERWDDVKRLRKVTKEKGFSKIP 420



 Score = 38.9 bits (89), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 14/148 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG-SGFLEEARYLFDIMPERD 59
           MI G     +   A KLFDEM    +   ++   G +++   +G +EE    F  M + +
Sbjct: 255 MILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMKKYN 314

Query: 60  CVT----WNTVISGYAKTGEMEEALRLFNSMPAR-NVVSWNA-MISGFLQN----GDVAN 109
            V     +  ++  + + G ++EAL L  SMP + +   W A +++  L N    G++A 
Sbjct: 315 LVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIA- 373

Query: 110 AIEFFDRMPGRDSASLSALVSGLIQNGE 137
           A   F+  P  D+    +L+S +  +GE
Sbjct: 374 AQHCFELEP--DTTGYRSLLSNIYASGE 399


>gi|356576967|ref|XP_003556601.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Glycine max]
          Length = 453

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 148/376 (39%), Positives = 227/376 (60%), Gaps = 2/376 (0%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           ++VSW +M+    K G V  AR +F++M  R+  SWN MI G+     + EA  LF  MP
Sbjct: 45  DVVSWTTMVAGLLKNGRVEDARALFDRMPVRNVVSWNAMIMGHAQNRRLHEALELFQGMP 104

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             D  +WN M++G+ Q G L  A   F  M +KN ++W +M+ G   +   E A+K+F +
Sbjct: 105 ERDMHSWNTMITGFIQNGKLNYAEKLFGEMREKNAITWTAMMMGYVQHGLSEEALKVFNK 164

Query: 321 MQV-EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGA 379
           M   +G KP+  TF ++L   S +  L  G QIHQM++KTV  D  I   LI MY +CG 
Sbjct: 165 MLANDGLKPNTGTFVTVLRACSDLAGLTEGQQIHQMISKTVFQDSXICGTLINMYPKCGE 224

Query: 380 IVEARIIFEEMKL-LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
           +  A+ +F++  L  ++++SWN MI G A HG+  EA+ LF  M+   V    +TF+ +L
Sbjct: 225 LHTAKXMFDDGLLSQRDLISWNGMIAGYAHHGYGKEAINLFNEMQELGVCANDVTFVGLL 284

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
            AC+H G+VEEG ++F  ++    I  R +H+A LVD+  R GRL++A ++I+G+  E  
Sbjct: 285 RACSHTGVVEEGLKYFDEILKNRSIXLREDHYACLVDLCDRTGRLKEAFNIIEGLGKESP 344

Query: 499 KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558
             VWG LL  C VH NV++ ++ A+ ++K+EP+N+  + LL NMYA VG+W +A  +R+ 
Sbjct: 345 LTVWGVLLARCNVHGNVDIGKLVAKKILKIEPQNAGTHSLLSNMYASVGKWKEAANIRMK 404

Query: 559 MKSNNIKKPTGYSWVD 574
           M    +KK  GYSW++
Sbjct: 405 MNDKGLKKQPGYSWIE 420



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 190/378 (50%), Gaps = 29/378 (7%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           DVVSW  M++G + +   G +E+AR LFD MP R+ V+WN +I G+A+   + EAL LF 
Sbjct: 45  DVVSWTTMVAGLLKN---GRVEDARALFDRMPVRNVVSWNAMIMGHAQNRRLHEALELFQ 101

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            MP R++ SWN MI+GF+QNG +  A + F  M  +++ + +A++ G +Q+G  +EA +V
Sbjct: 102 GMPERDMHSWNTMITGFIQNGKLNYAEKLFGEMREKNAITWTAMMMGYVQHGLSEEALKV 161

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
             K  +  DG +     + T++        + E +++   I            F+ + + 
Sbjct: 162 FNKMLAN-DGLKPNTGTFVTVLRACSDLAGLTEGQQIHQMIS--------KTVFQDSXIC 212

Query: 205 WNSMIMCYAKAGDVVSAREIFEQML--ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH- 261
             ++I  Y K G++ +A+ +F+  L  +RD  SWN MI+GY H    +EA NLF +M   
Sbjct: 213 -GTLINMYPKCGELHTAKXMFDDGLLSQRDLISWNGMIAGYAHHGYGKEAINLFNEMQEL 271

Query: 262 ---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK-DYEGAIK- 316
               + +T+  ++   +  G +E  L +F  + +   +        C  +  D  G +K 
Sbjct: 272 GVCANDVTFVGLLRACSHTGVVEEGLKYFDEILKNRSIXLREDHYACLVDLCDRTGRLKE 331

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPIN----NALIT 372
            F  ++  G++     +  +L+      ++H  + I ++V K ++   P N    + L  
Sbjct: 332 AFNIIEGLGKESPLTVWGVLLAR----CNVHGNVDIGKLVAKKILKIEPQNAGTHSLLSN 387

Query: 373 MYARCGAIVEARIIFEEM 390
           MYA  G   EA  I  +M
Sbjct: 388 MYASVGKWKEAANIRMKM 405



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 171/364 (46%), Gaps = 44/364 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++G +K   +  AR LFD MP R+VVSWN MI G+  +R    L EA  LF  MPERD 
Sbjct: 52  MVAGLLKNGRVEDARALFDRMPVRNVVSWNAMIMGHAQNRR---LHEALELFQGMPERDM 108

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WNT+I+G+ + G++  A +LF  M  +N ++W AM+ G++Q+G    A++ F++M   
Sbjct: 109 HSWNTMITGFIQNGKLNYAEKLFGEMREKNAITWTAMMMGYVQHGLSEEALKVFNKMLAN 168

Query: 121 DSAS---------LSAL--VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
           D            L A   ++GL +  ++ +     V   S   G         TLI  Y
Sbjct: 169 DGLKPNTGTFVTVLRACSDLAGLTEGQQIHQMISKTVFQDSXICG---------TLINMY 219

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
            + G +  A+ +FD            +  +R+++SWN MI  YA  G    A  +F +M 
Sbjct: 220 PKCGELHTAKXMFDD----------GLLSQRDLISWNGMIAGYAHHGYGKEAINLFNEMQ 269

Query: 230 ERDTFSWNTMISGYI----HVLDMEEASNLFVKMPHPDTLT-----WNAMVSGYAQIGNL 280
           E    + +    G +    H   +EE    F ++    ++      +  +V    + G L
Sbjct: 270 ELGVCANDVTFVGLLRACSHTGVVEEGLKYFDEILKNRSIXLREDHYACLVDLCDRTGRL 329

Query: 281 ELALDFFKRMPQKN-LVSWNSMIAGCETNKDYE-GAIKLFIQMQVEGEKPDRHTFSSILS 338
           + A +  + + +++ L  W  ++A C  + + + G +     +++E +    H+  S + 
Sbjct: 330 KEAFNIIEGLGKESPLTVWGVLLARCNVHGNVDIGKLVAKKILKIEPQNAGTHSLLSNMY 389

Query: 339 MSSG 342
            S G
Sbjct: 390 ASVG 393



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 111/231 (48%), Gaps = 12/231 (5%)

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
            DF      +++VSW +M+AG   N   E A  LF +M V     +  ++++++   +  
Sbjct: 35  FDFSLTDQVEDVVSWTTMVAGLLKNGRVEDARALFDRMPVR----NVVSWNAMIMGHAQN 90

Query: 344 VDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
             LH  +++ Q + +    D+   N +IT + + G +  A  +F EM+  KN ++W AM+
Sbjct: 91  RRLHEALELFQGMPER---DMHSWNTMITGFIQNGKLNYAEKLFGEMR-EKNAITWTAMM 146

Query: 404 GGCASHGFATEALELFKSMRSFKVL-PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
            G   HG + EAL++F  M +   L P   TF++VL AC+    + EG+Q  + +     
Sbjct: 147 MGYVQHGLSEEALKVFNKMLANDGLKPNTGTFVTVLRACSDLAGLTEGQQIHQMISKTVF 206

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLI-KGMPFEPDKAVWGALLGACRVH 512
            +  I    +L+++  + G L  A  +   G+  + D   W  ++     H
Sbjct: 207 QDSXI--CGTLINMYPKCGELHTAKXMFDDGLLSQRDLISWNGMIAGYAHH 255


>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
          Length = 584

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 197/585 (33%), Positives = 306/585 (52%), Gaps = 35/585 (5%)

Query: 8   RREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DIMPERDCV 61
           RR    AR +     +   ++  +++S + +SR S   E AR +F          E D  
Sbjct: 1   RRXTFXARXITTGFIKNPNLTTRIVLS-FSASRRSYLAEFARCIFHEYHVSSYSVEEDPF 59

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEF------FD 115
            WN VI  ++   +   AL LF  M   +V      IS  L+       ++F      F 
Sbjct: 60  LWNAVIKSFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFL 119

Query: 116 RMPG--RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           R  G   D    + L+   ++ G L  A +V  +   R     D V +YN++I GY + G
Sbjct: 120 RKTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQR-----DSV-SYNSMIDGYVKCG 173

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERD 232
            +E AR+LFD +P          R K+N++SWN MI  Y ++ D V+ A ++F++M E+D
Sbjct: 174 LIESARELFDLMP----------REKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKD 223

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
             SWN++I GY+    +E+A +LF  MP  D +TW  M+ GYA++G +  A   F  MPQ
Sbjct: 224 LISWNSLIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQ 283

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQ 351
           +++V++NSM+AG   NK +  AI +F  M+ E    PD  T   +LS  + +  L   + 
Sbjct: 284 RDVVAYNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVD 343

Query: 352 IHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           IH  +          +  ALI  Y++CG+I ++  +FEE++  K++  WNAMIGG A HG
Sbjct: 344 IHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIEN-KSIDHWNAMIGGLAIHG 402

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
               A ++   +    + P  ITFI VL+AC+H+GLV+EG   F+ M  ++ IEP+++H+
Sbjct: 403 LGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHY 462

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
             +VDI+ R G +E A +LI+ MP EP+  +W   L AC  H   E  ++ A+ L     
Sbjct: 463 GCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGG 522

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
            N + +VLL NMYA  G W +   VR  MK   ++K  G SW++ 
Sbjct: 523 YNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWIEL 567



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 182/341 (53%), Gaps = 39/341 (11%)

Query: 1   MISGYVKRRE-MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           MISGY +  + +  A KLFDEMP++D++SWN +I GY+  R    +E+A+ LFD+MP +D
Sbjct: 198 MISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKHRR---IEDAKSLFDLMPRKD 254

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            VTW T+I GYAK G + +A +LF+ MP R+VV++N+M++G++QN   A AI  F+ M  
Sbjct: 255 VVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYHAEAIGIFNDMEK 314

Query: 120 R-----DSASLSALVSGLIQNGELDEAARV-LVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
                 D  +L  ++S + Q G L +A  + L    ++   G  L  A   LI  Y + G
Sbjct: 315 ESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVA---LIDTYSKCG 371

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-- 231
            ++++ ++F++I              ++I  WN+MI   A  G   SA ++  Q+ +R  
Sbjct: 372 SIQKSMRVFEEIE------------NKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSI 419

Query: 232 --DTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELAL 284
             D  ++  +++   H   ++E    F  M       P    +  MV   ++ G++ELA 
Sbjct: 420 KPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAK 479

Query: 285 DFFKRMP-QKNLVSWNSMIAGCETNKDYEG----AIKLFIQ 320
           +  + MP + N V W + +  C  +K++E     A  LF+Q
Sbjct: 480 NLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQ 520



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 201/417 (48%), Gaps = 54/417 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ER 58
           +I  Y+K   +  AR++FD MPQRD VS+N MI GY+     G +E AR LFD+MP  ++
Sbjct: 134 LIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVK---CGLIESARELFDLMPREKK 190

Query: 59  DCVTWNTVISGYAKTGE-MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           + ++WN +ISGY ++ + +  A +LF+ MP ++++SWN++I G++++  + +A   FD M
Sbjct: 191 NLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKHRRIEDAKSLFDLM 250

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P +D  + + ++ G  + G + +A ++  +   R     D+V AYN+++ GY Q     E
Sbjct: 251 PRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQR-----DVV-AYNSMMAGYVQNKYHAE 304

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           A  +F+ +       E       +  +   ++   A+ G +  A +I   +++ + F   
Sbjct: 305 AIGIFNDM-------EKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMD-NKFRLG 356

Query: 238 -----TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
                 +I  Y     ++++  +F ++ +     WNAM+ G A  G  E A D   ++ +
Sbjct: 357 GKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEK 416

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           +++   +    G      + G +K                         G++   L  + 
Sbjct: 417 RSIKPDDITFIGVLNACSHSGLVK------------------------EGLLCFELMRRK 452

Query: 353 HQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           H+     + P +     ++ + +R G+I  A+ + EEM +  N V W   +  C++H
Sbjct: 453 HK-----IEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNH 504


>gi|302763819|ref|XP_002965331.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
 gi|300167564|gb|EFJ34169.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
          Length = 806

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 171/526 (32%), Positives = 294/526 (55%), Gaps = 33/526 (6%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------ 117
           N +IS Y + G+++EALR+F  MP RNVVSW +MI+   Q G  + +++ FD M      
Sbjct: 288 NALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDGMIAEGIN 347

Query: 118 PGRDS-ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           P   + AS+ + ++ L ++  LD   ++  +  +     + +V+  N+LI  Y + G + 
Sbjct: 348 PNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQ--NSLINMYARSGLLA 405

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----D 232
           EAR++FD I  N           + +VS+ +MI  YA  G    A EIF +M  R    +
Sbjct: 406 EAREVFDSILEN----------SKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAPN 455

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKM-----PHPDTLTWNAMVSGYAQIGNLELALDFF 287
             ++ T+++  + + D+   + +  +M        D   +N++V  YA+ G+L  A   F
Sbjct: 456 EITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVF 515

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
           + M  K+LV+W ++IA    + +   A+ L+ +M   G  PD  T S++L   + + DL 
Sbjct: 516 ETMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLA 575

Query: 348 LGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           +G +IH+   ++ +  D    NAL  MYA+CG++ +A  ++   +   +V +W +M+   
Sbjct: 576 MGEKIHRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRG-SDVATWTSMLAAH 634

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
           +  G A+ ALEL+  M S  V P  +TFI VL +C+ AGLV EGR+ F S+ ++YG +P 
Sbjct: 635 SQQGLASVALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEGREFFHSITSDYGSQPS 694

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM 526
            EHF  +VD++GR G+L DA +L+  MPF PD+  W +LL +C++H + E+   AAE L+
Sbjct: 695 AEHFGCMVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCKLHTDAEIGTRAAECLL 754

Query: 527 KVEPENSTPYVLLYNMYADVGRWDDANEVR---LLMKSNNIKKPTG 569
           +++PE+++ +V L  +YA  GR  D +E++    L +   + + TG
Sbjct: 755 ELDPESTSQFVALSQIYAAAGRNSDIDEIKRELALRRQIEVHRTTG 800



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 136/471 (28%), Positives = 220/471 (46%), Gaps = 41/471 (8%)

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           R+ +    V   YA+    + A+ LF++MP R    WN ++  FL      + +E + RM
Sbjct: 83  RNALLGELVFQMYARCRCFDTAIALFDAMPDRRPFCWNVLMKEFLAADRPRDTLELYRRM 142

Query: 118 PGRDSA-SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT-LIVGYGQRGRV 175
              ++  S    +  ++  G + + A+       R   G  +  +  + L+  Y Q GR+
Sbjct: 143 SVENTQPSACGFMWAIVACGRIKDLAQGR-SIHYRVATGRGINSSIQSALVTMYAQCGRI 201

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
           + A   FD      +R  G          WN+++   A AG    A E+F QM +     
Sbjct: 202 DLAMAAFDD-----NRELGTA-------PWNAIMSALAGAGHHRRAIELFFQMEQHQCSD 249

Query: 236 WNTM-----------ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
            +             + G I + D  ++     ++     L  NA++S Y + G L+ AL
Sbjct: 250 RSCAIALGACAAAGHLRGGIQIHDKIQS-----EIHGTRVLVLNALISMYVRCGKLDEAL 304

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI- 343
             F  MP +N+VSW SMIA       Y  ++KLF  M  EG  P+  T++S++S  + + 
Sbjct: 305 RVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDGMIAEGINPNEKTYASVVSAIAHLG 364

Query: 344 --VDLHLGMQIHQMVTKTVIPDVPI-NNALITMYARCGAIVEARIIFEE-MKLLKNVVSW 399
               L  G +IH  +T + I   PI  N+LI MYAR G + EAR +F+  ++  K VVS+
Sbjct: 365 RDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAEAREVFDSILENSKTVVSF 424

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
             MI   A +G   +ALE+F+ M +  V P  ITF +VL+AC   G +  G    + M+ 
Sbjct: 425 TTMISAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMI- 483

Query: 460 EYGIEPRIEHFA--SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           E G++   + FA  SLVD+  + G L  A  + + M  + D   W  ++ A
Sbjct: 484 ESGLDSS-DPFAYNSLVDMYAKCGDLGFAARVFETMKTK-DLVAWTTIIAA 532



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 99/467 (21%), Positives = 208/467 (44%), Gaps = 74/467 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGF---------------- 44
           +IS YV+  ++ +A ++F +MP R+VVSW  MI+    +    F                
Sbjct: 290 LISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDGMIAEGINPN 349

Query: 45  -------------------LEEARYLFDIMP----ERDCVTWNTVISGYAKTGEMEEALR 81
                              L+  R +   +     + D +  N++I+ YA++G + EA  
Sbjct: 350 EKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAEARE 409

Query: 82  LFNSM--PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA----SLSALVSGLIQN 135
           +F+S+   ++ VVS+  MIS +  NG    A+E F  M  R  A    + + +++  +  
Sbjct: 410 VFDSILENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACVAI 469

Query: 136 GELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           G+L   A +   +++ G   D  +    AYN+L+  Y + G +  A ++F+ +       
Sbjct: 470 GDLASGAWIHERMIESG--LDSSDPF--AYNSLVDMYAKCGDLGFAARVFETMKT----- 520

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLD 248
                  +++V+W ++I    ++G+  +A +++++ML+     D  + +T++    ++ D
Sbjct: 521 -------KDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGD 573

Query: 249 MEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           +     +  +        D    NA+ + YA+ G+LE A   ++R    ++ +W SM+A 
Sbjct: 574 LAMGEKIHRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVATWTSMLAA 633

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV--IP 362
                    A++L+ +M+ EG +P+  TF  +L   S    +  G +    +T      P
Sbjct: 634 HSQQGLASVALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEGREFFHSITSDYGSQP 693

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
                  ++ +  R G + +A  + + M    + ++W +++  C  H
Sbjct: 694 SAEHFGCMVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCKLH 740



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 146/335 (43%), Gaps = 40/335 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS------RGSGFLEEARYLFDI 54
           MIS Y       +A ++F EM  R V    +  +  +++        SG     R +   
Sbjct: 427 MISAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESG 486

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
           +   D   +N+++  YAK G++  A R+F +M  +++V+W  +I+  +Q+G+   A++ +
Sbjct: 487 LDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRAALDLY 546

Query: 115 DRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG 170
           DRM       D A+LS L+      G+L    ++  +   R    +D     N L   Y 
Sbjct: 547 DRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIH-RQALRSKLEQD-AHFQNALAAMYA 604

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
           + G +E+A +L+ +      RG        ++ +W SM+  +++ G    A E++ +M E
Sbjct: 605 KCGSLEKATRLYRRC-----RGS-------DVATWTSMLAAHSQQGLASVALELYAEM-E 651

Query: 231 RDTFSWNTMISGYIHVLD-------MEEASNLFVKM-----PHPDTLTWNAMVSGYAQIG 278
            +    N +   +I VL        + E    F  +       P    +  MV    + G
Sbjct: 652 SEGVRPNEVT--FIPVLISCSQAGLVAEGREFFHSITSDYGSQPSAEHFGCMVDVLGRAG 709

Query: 279 NLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
            L  A +    MP   + ++W S+++ C+ + D E
Sbjct: 710 KLRDAEELLDSMPFYPDEIAWQSLLSSCKLHTDAE 744



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 7/189 (3%)

Query: 333 FSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
           ++++L        L  G ++H  +V++ +  +  +   +  MYARC     A  +F+ M 
Sbjct: 53  YANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIALFDAMP 112

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             +    WN ++    +     + LEL++ M      P+   F+  + AC     + +GR
Sbjct: 113 -DRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVACGRIKDLAQGR 171

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM---DLIKGMPFEPDKAVWGALLGA 508
                +    GI   I+  ++LV +  + GR++ AM   D  + +   P  A+  AL GA
Sbjct: 172 SIHYRVATGRGINSSIQ--SALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGA 229

Query: 509 CRVHNNVEL 517
                 +EL
Sbjct: 230 GHHRRAIEL 238


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 193/633 (30%), Positives = 320/633 (50%), Gaps = 93/633 (14%)

Query: 6   VKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM-----PERD- 59
           VK+ ++ KAR +FD+M  RD +SW  +I+GY+++  S    EA  LF  M     P+RD 
Sbjct: 68  VKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDS---YEALILFSNMWVHPGPQRDQ 124

Query: 60  ---------CV-------------------------TWNTVISGYAKTGEMEEALRLFNS 85
                    C                            + +I  Y K G++E+  R+F  
Sbjct: 125 FMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEK 184

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDEA 141
           M  RNVVSW A+I+G +  G     + +F  M     G DS + +  +     +  L   
Sbjct: 185 MMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHG 244

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +  +   +  G ++     NTL   Y + G+ +   +LF+K+ +             +
Sbjct: 245 KAIHTQTIKQ--GFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMP------------D 290

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLE------RDTFS-------------WNTMISG 242
           +VSW ++I  Y + G+   A E F++M +      + TF+             W   I G
Sbjct: 291 VVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHG 350

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
             HVL +   + L V          N++++ Y++ G L+ A   F  + +K+++SW+++I
Sbjct: 351 --HVLRLGLVNALSVA---------NSIITLYSKCGLLKSASLVFHGITRKDIISWSTII 399

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVI 361
           +        + A      M+ EG KP+    SS+LS+   +  L  G Q+H  ++   + 
Sbjct: 400 SVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGID 459

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
            +  +++A+I+MY++CG++ EA  IF  MK+  +++SW AMI G A HG++ EA+ LF+ 
Sbjct: 460 HEAMVHSAIISMYSKCGSVQEASKIFNGMKI-NDIISWTAMINGYAEHGYSQEAINLFEK 518

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           + S  + P Y+ FI VL+AC HAG+V+ G  +F  M N Y I P  EH+  L+D++ R G
Sbjct: 519 ISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAG 578

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
           RL +A  +I+ MPF  D  VW  LL ACRVH +V+  +  AE L++++P ++  ++ L N
Sbjct: 579 RLSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLAN 638

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +YA  GRW +A  +R LMKS  + K  G+SWV+
Sbjct: 639 IYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVN 671



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 214/468 (45%), Gaps = 41/468 (8%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM-----P 118
           N+ +    K G++ +A  +F+ M  R+ +SW  +I+G++   D   A+  F  M     P
Sbjct: 61  NSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGP 120

Query: 119 GRD----SASLSALVSGL-IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
            RD    S +L A   G+ I  GEL     V         G    V   + LI  Y + G
Sbjct: 121 QRDQFMISVALKACALGVNICFGELLHGFSVK-------SGLIHSVFVSSALIDMYMKVG 173

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----- 228
           ++E+  ++F+K+              RN+VSW ++I     AG  +     F +M     
Sbjct: 174 KIEQGCRVFEKM------------MTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKV 221

Query: 229 -LERDTFSWNTMISGYIHVLDMEEA--SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
             +  TF+     S    +L   +A  +    +     +   N + + Y + G  +  + 
Sbjct: 222 GYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMR 281

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F++M   ++VSW ++I+      + E A++ F +M+     P+++TF++++S  + +  
Sbjct: 282 LFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAA 341

Query: 346 LHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
              G QIH  V +  ++  + + N++IT+Y++CG +  A ++F  +   K+++SW+ +I 
Sbjct: 342 AKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGIT-RKDIISWSTIIS 400

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
             +  G+A EA +    MR     P      SVLS C    L+E+G+Q    ++   GI+
Sbjct: 401 VYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLC-IGID 459

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
                 ++++ +  + G +++A  +  GM    D   W A++     H
Sbjct: 460 HEAMVHSAIISMYSKCGSVQEASKIFNGMKIN-DIISWTAMINGYAEH 506



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 160/380 (42%), Gaps = 48/380 (12%)

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y   G   E R+L  + P+     E N     N++  NS +    K G +  AR +F++M
Sbjct: 26  YILTGTATECRELIQQ-PIQEQPAE-NAYSVHNMLELNSELKQLVKQGQLCKARYMFDKM 83

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKM-PHP------------------------- 262
             RD  SW T+I+GY++  D  EA  LF  M  HP                         
Sbjct: 84  THRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACALGVNICFG 143

Query: 263 --------------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG-CET 307
                              +A++  Y ++G +E     F++M  +N+VSW ++IAG    
Sbjct: 144 ELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHA 203

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-I 366
             + EG +  F +M       D HTF+  L  S+    LH G  IH    K    +   +
Sbjct: 204 GYNMEGLL-YFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFV 262

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            N L TMY +CG       +FE+M+ + +VVSW  +I      G    A+E FK MR   
Sbjct: 263 INTLATMYNKCGKPDYVMRLFEKMR-MPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSY 321

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           V P   TF +V+S+CA+    + G Q     V   G+   +    S++ +  + G L+ A
Sbjct: 322 VSPNKYTFAAVISSCANLAAAKWGEQ-IHGHVLRLGLVNALSVANSIITLYSKCGLLKSA 380

Query: 487 MDLIKGMPFEPDKAVWGALL 506
             +  G+    D   W  ++
Sbjct: 381 SLVFHGIT-RKDIISWSTII 399


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 179/567 (31%), Positives = 296/567 (52%), Gaps = 69/567 (12%)

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           R C+     I    K  ++ EA+    ++  R +   +  ++  LQ+   + A+    R+
Sbjct: 24  RPCLV--EAIVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRV 81

Query: 118 PGRDSASLSALVSGLIQNGEL--DEAARVLVKCGSRCDGGEDL-------VRAYNTLIVG 168
                  L   ++GL + G    +    +  KCG   +  +         + ++N ++ G
Sbjct: 82  ------HLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSG 135

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG------------ 216
           Y + G ++ ARKLFDK+P            ++++VSWN+M++ +A+ G            
Sbjct: 136 YAKLGMIKPARKLFDKMP------------EKDVVSWNTMVIAHAQCGYWDEALRFYSEF 183

Query: 217 -----------------------DVVSAREIFEQMLERDTFS----WNTMISGYIHVLDM 249
                                  +V   R++  Q+L     S     ++++  Y+    M
Sbjct: 184 RQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLM 243

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            +A  LF +M   D L W  MVSGYA+ G+++ A + F  MP+KN VSW ++I+G   N 
Sbjct: 244 GDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNG 303

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINN 368
               A++LF +M +   +PD+ TFSS L   + I  L  G QIH  + +    P+  + +
Sbjct: 304 MGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVS 363

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           ALI MY++CG++   R +F+ M    +VV WN +I   A HG   EA+++   M      
Sbjct: 364 ALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAK 423

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P  ITF+ +L+AC+H+GLV++G   F+SM  +YGI P  EH+A L+D++GR G  E+ MD
Sbjct: 424 PDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMD 483

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
            ++ MP++PD  VW ALLG CR+H ++EL + AAE L+++EP++ST YVLL ++YA +GR
Sbjct: 484 QLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGR 543

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVDF 575
           W+   +VR LM    +KK    SW++ 
Sbjct: 544 WESVQKVRQLMNERQVKKERAISWLEI 570



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 202/429 (47%), Gaps = 40/429 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+ Y K  +  +ARK+FD+M  R++ SWN M+SGY      G ++ AR LFD MPE+D 
Sbjct: 101 LINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKL---GMIKPARKLFDKMPEKDV 157

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT++  +A+ G  +EALR ++      +       +G L        +    ++ G+
Sbjct: 158 VSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQ 217

Query: 121 DSASLSALVSGLIQNGELDEAA-RVLVKCGSRCDGGEDL-------VRAYNTLIVGYGQR 172
                  LV+G + N  L  +     VKCG   D  +         V A+ T++ GY + 
Sbjct: 218 ------ILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKW 271

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML--- 229
           G ++ A +LF ++P            ++N VSW ++I  YA+ G    A E+F +M+   
Sbjct: 272 GDMKSANELFVEMP------------EKNPVSWTALISGYARNGMGHKALELFTKMMLFH 319

Query: 230 -ERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELAL 284
              D F++++ +     +  ++    +   +      P+T+  +A++  Y++ G+L +  
Sbjct: 320 VRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGR 379

Query: 285 DFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--S 341
             F  M  K ++V WN++I+    +   E AI++   M   G KPD+ TF  IL+    S
Sbjct: 380 KVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHS 439

Query: 342 GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           G+V   L           ++P       LI +  R G   E     E+M    +   WNA
Sbjct: 440 GLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNA 499

Query: 402 MIGGCASHG 410
           ++G C  HG
Sbjct: 500 LLGVCRIHG 508



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 9/190 (4%)

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
           R P++      +++  C+ NK  E A+     +   G + D  T +S+L   +    L  
Sbjct: 19  RKPRRRPCLVEAIVKLCKKNKLNE-AVSSLENLARRGLRLDSRTLASLLQHCADSRALRE 77

Query: 349 GMQIHQMVTKTVI--PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           G ++H  +  T +  P   ++N LI MYA+CG  VEAR +F++M   +N+ SWN M+ G 
Sbjct: 78  GKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMS-ARNLYSWNNMLSGY 136

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
           A  G    A +LF  M    V    +++ +++ A A  G  +E  + F S   + GI+  
Sbjct: 137 AKLGMIKPARKLFDKMPEKDV----VSWNTMVIAHAQCGYWDEALR-FYSEFRQLGIQCN 191

Query: 467 IEHFASLVDI 476
              FA ++ +
Sbjct: 192 GFSFAGVLTV 201


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 213/607 (35%), Positives = 319/607 (52%), Gaps = 57/607 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVV-----SWNVMISGYIS------SRGSGFLEEAR 49
           ++ G VK+++   A K+F EM  +D+V     S+ V++S +         R  G    A 
Sbjct: 354 LMVGLVKQKQGEAAAKVFHEM--KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAH 411

Query: 50  YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVAN 109
            +   + +      N +++ YAK+G + +A  +F  M  ++ VSWN++ISG  QN    +
Sbjct: 412 VIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSED 471

Query: 110 AIEFFDRMPGRDSASLSA---LVSGLIQNGELDEAARVLVKCGSRCDG---GEDL-VRAY 162
           A E F RM  R + S+ +   L+S L     L     +++     CDG   G D  V   
Sbjct: 472 AAESFHRM--RRTGSMPSNFTLISTLSSCASL---GWIMLGEQIHCDGLKLGLDTDVSVS 526

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA-GDVVSA 221
           N L+  Y + G   E  K+F  +P            + + VSWNS+I   + +   V  A
Sbjct: 527 NALLALYAETGCFTECLKVFSLMP------------EYDQVSWNSVIGALSDSEASVSQA 574

Query: 222 REIFEQM------LERDTFSWNTMISGYIHVLDMEEASN----LFVKMP-HPDTLTWNAM 270
            + F QM      L R TF     I   +  L + E S+    L +K     DT   NA+
Sbjct: 575 VKYFLQMMRGGWGLSRVTF---INILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNAL 631

Query: 271 VSGYAQIGNLELALDFFKRMPQ-KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +S Y + G +      F RM + ++ VSWNSMI+G   N+    A+ L   M  +G++ D
Sbjct: 632 LSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLD 691

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFE 388
             TF++ILS  + +  L  GM++H    +  +  DV + +AL+ MY++CG I  A   FE
Sbjct: 692 SFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFE 751

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
            M L +NV SWN+MI G A HG   +AL+LF  M      P ++TF+ VLSAC+H G VE
Sbjct: 752 LMPL-RNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVE 810

Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           EG +HFKSM   Y + PR+EHF+ +VD++GR G+L++  D I  MP +P+  +W  +LGA
Sbjct: 811 EGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGA 870

Query: 509 CRVHN--NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
           C   N  N EL + AAE L+++EP+N+  YVLL NMYA   +W+D  + R  MK   +KK
Sbjct: 871 CCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKK 930

Query: 567 PTGYSWV 573
             G SWV
Sbjct: 931 EAGCSWV 937



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 159/614 (25%), Positives = 270/614 (43%), Gaps = 105/614 (17%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           DVV  NV+IS Y S   S    +AR +FD +  R+ ++WN++IS Y++ G+   A  LF+
Sbjct: 208 DVVVCNVLISMYGSCLDSA--NDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFS 265

Query: 85  SMPA---------------------------------------------RNVVSWNAMIS 99
           SM                                               +++   +A++S
Sbjct: 266 SMQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVS 325

Query: 100 GFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLV 159
           GF + G   +A   F++M  R+  S++ L+ GL++  + + AA+V  +         D  
Sbjct: 326 GFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD-- 383

Query: 160 RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVV 219
            +Y  L+  + +   +EE R+   ++  +  R   N      +   N ++  YAK+G + 
Sbjct: 384 -SYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLN---DNKVAIGNGLVNMYAKSGAIA 439

Query: 220 SAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT--------- 266
            A  +FE M+E+D+ SWN++ISG       E+A+  F +M      P   T         
Sbjct: 440 DACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCA 499

Query: 267 ---W-----------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
              W                       NA+++ YA+ G     L  F  MP+ + VSWNS
Sbjct: 500 SLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNS 559

Query: 301 MI-AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           +I A  ++      A+K F+QM   G    R TF +ILS  S +    +  QIH +V K 
Sbjct: 560 VIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKY 619

Query: 360 VIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
            +  D  I NAL++ Y +CG + E   IF  M   ++ VSWN+MI G   +    +A++L
Sbjct: 620 CLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDL 679

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH----FASLV 474
              M          TF ++LSACA    +E G +     V+  GI   +E      ++LV
Sbjct: 680 VWFMMQKGQRLDSFTFATILSACASVATLERGME-----VHACGIRACLESDVVVGSALV 734

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA-QVAAEALMKVEPENS 533
           D+  + GR++ A    + MP   +   W +++     H + E A ++    ++  +P + 
Sbjct: 735 DMYSKCGRIDYASRFFELMPLR-NVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDH 793

Query: 534 TPYVLLYNMYADVG 547
             +V + +  + VG
Sbjct: 794 VTFVGVLSACSHVG 807



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 227/484 (46%), Gaps = 69/484 (14%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           NT+I+ Y + G++  A +LF+ M  RN+V+W  +ISG+ QNG    A   F  M      
Sbjct: 110 NTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDM------ 163

Query: 124 SLSALVSGLIQNG-ELDEAARVLVKCG--------------SRCDGGEDLVRAYNTLIVG 168
               + +G I N      A R   + G              S+   G D+V   N LI  
Sbjct: 164 ----VRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVV-VCNVLISM 218

Query: 169 YGQ-RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
           YG       +AR +FD I +            RN +SWNS+I  Y++ GD VSA ++F  
Sbjct: 219 YGSCLDSANDARSVFDGIGI------------RNSISWNSIISVYSRRGDAVSAYDLFSS 266

Query: 228 M--------LERDTFSWNTMISGYIHVLDMEEA--SNLFVKMPHP----DTLTWNAMVSG 273
           M         + + +++ ++I+     +D        +  ++       D    +A+VSG
Sbjct: 267 MQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSG 326

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ-VEGEKPDRH- 331
           +A+ G  + A + F++M  +N+VS N ++ G    K  E A K+F +M+ + G   D + 
Sbjct: 327 FARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYV 386

Query: 332 ----TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD--VPINNALITMYARCGAIVEARI 385
                FS    +  G      G ++H  V +T + D  V I N L+ MYA+ GAI +A  
Sbjct: 387 VLLSAFSEFSVLEEG---RRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACS 443

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +FE M + K+ VSWN++I G   +  + +A E F  MR    +P+  T IS LS+CA  G
Sbjct: 444 VFELM-VEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLG 502

Query: 446 LVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
            +  G Q H   +  + G++  +    +L+ +    G   + + +   MP E D+  W +
Sbjct: 503 WIMLGEQIHCDGL--KLGLDTDVSVSNALLALYAETGCFTECLKVFSLMP-EYDQVSWNS 559

Query: 505 LLGA 508
           ++GA
Sbjct: 560 VIGA 563



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 180/392 (45%), Gaps = 61/392 (15%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  N+   N++I  Y + GD+ SA+++F++M  R+  +W  +ISGY      +EA   F 
Sbjct: 102 FVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFR 161

Query: 258 KM------PH-----------------------------------PDTLTWNAMVSGYAQ 276
            M      P+                                    D +  N ++S Y  
Sbjct: 162 DMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGS 221

Query: 277 -IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE----KPDRH 331
            + +   A   F  +  +N +SWNS+I+      D   A  LF  MQ EG     KP+ +
Sbjct: 222 CLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEY 281

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKT----VIPDVPINNALITMYARCGAIVEARIIF 387
           TF S+++ +   VD  L + + QM+ +      + D+ +++AL++ +AR G   +A+ IF
Sbjct: 282 TFGSLITTACSSVDFGLCV-LEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIF 340

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
           E+M  ++NVVS N ++ G         A ++F  M+    + +  +++ +LSA +   ++
Sbjct: 341 EQMG-VRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINS-DSYVVLLSAFSEFSVL 398

Query: 448 EEGRQHFKSM---VNEYGI-EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           EEGR+  + +   V   G+ + ++     LV++  + G + DA  + + M  E D   W 
Sbjct: 399 EEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELM-VEKDSVSWN 457

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           +L+      +  E ++ AAE+  ++    S P
Sbjct: 458 SLISGL---DQNECSEDAAESFHRMRRTGSMP 486



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 170/388 (43%), Gaps = 55/388 (14%)

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKM 259
           ++ S+I  Y  +     ARE+  Q ++     + F  NT+I+ Y+ + D+  A  LF +M
Sbjct: 73  TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 132

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
            + + +TW  ++SGY Q G  + A   F+ M +   +                       
Sbjct: 133 SNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFI----------------------- 169

Query: 320 QMQVEGEKPDRHTFSSIL--SMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYAR 376
                   P+ + F S L     SG     LG+QIH +++KT    DV + N LI+MY  
Sbjct: 170 --------PNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGS 221

Query: 377 C-GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS----FKVLPTY 431
           C  +  +AR +F+ +  ++N +SWN++I   +  G A  A +LF SM+     F   P  
Sbjct: 222 CLDSANDARSVFDGIG-IRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNE 280

Query: 432 ITFISVL-SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            TF S++ +AC+         +   + V + G    +   ++LV    R G  +DA ++ 
Sbjct: 281 YTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIF 340

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV---- 546
           + M      ++ G ++G  +       A+V  E +  +   NS  YV+L + +++     
Sbjct: 341 EQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHE-MKDLVGINSDSYVVLLSAFSEFSVLE 399

Query: 547 -----GRWDDANEVRLLMKSNNIKKPTG 569
                GR   A+ +R  +  N +    G
Sbjct: 400 EGRRKGREVHAHVIRTGLNDNKVAIGNG 427


>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 167/417 (40%), Positives = 245/417 (58%), Gaps = 21/417 (5%)

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +N +I GY   G  + A  LF+K+ +            R  V+W  MI  +A++GD  +A
Sbjct: 34  WNAMICGYLGNGDSKSAVLLFEKMSI------------RTAVTWIEMIDGFARSGDTETA 81

Query: 222 REIFEQMLE--RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279
           R  F+ +    R+  +W  M+ GY    +ME A  +F  MP  +   W++M+SGY + GN
Sbjct: 82  RRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGN 141

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           ++ A   F R+P +NLV+WNS+I+G   N   E A++ F +MQ EG +PD  T +S+LS 
Sbjct: 142 VKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSA 201

Query: 340 SSGIVDLHLGMQIHQMVT-KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            S +  L  G +IH M+  K +  +  + N L+ MYA+CG +  AR+IFE M   +N   
Sbjct: 202 CSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMA-HRNRAC 260

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN+MI G A HG + EALE F  M      P  ITF+SVLSACAH G V  G + F  M 
Sbjct: 261 WNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRM- 319

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            +YG+   I+H+  L+D++GR GR+++A DLIK MP +P+  VWGALLGACRVH ++E+A
Sbjct: 320 EKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMA 379

Query: 519 QVAAEALMKVEPENS----TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
               E ++KV+   S    + YVLL N+YA   RW+ A ++R+ M +   +K +G S
Sbjct: 380 DRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCS 436



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 120/378 (31%), Positives = 190/378 (50%), Gaps = 29/378 (7%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G + ++R +FD MPER+ VTWN +I GY   G+ + A+ LF  M  R  V+W  MI GF 
Sbjct: 14  GNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFA 73

Query: 103 QNGDVANAIEFFDRMPG--RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR 160
           ++GD   A  FFD +P   R+  + + +V G  +N E++ A  V      R         
Sbjct: 74  RSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRN------FF 127

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
           A++++I GY ++G V+EAR +FD+IPV            RN+V+WNS+I  YA+ G    
Sbjct: 128 AWSSMISGYCKKGNVKEARSIFDRIPV------------RNLVNWNSLISGYAQNGFSEE 175

Query: 221 AREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP----DTLTWNAMVS 272
           A E F +M     E D  +  +++S    +  ++    +   M H     +    N +V 
Sbjct: 176 ALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVD 235

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
            YA+ G+L  A   F+ M  +N   WNSMI+G   +   + A++ F +M+   E PD  T
Sbjct: 236 MYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEIT 295

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
           F S+LS  +    ++ G++I   + K  +   +     LI +  R G I EA  + + M 
Sbjct: 296 FLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMP 355

Query: 392 LLKNVVSWNAMIGGCASH 409
           +  N V W A++G C  H
Sbjct: 356 VKPNDVVWGALLGACRVH 373



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 202/433 (46%), Gaps = 56/433 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS------------------ 42
           ++  Y K   +  +RK+FD MP+R+ V+WN MI GY+ +  S                  
Sbjct: 6   LVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTW 65

Query: 43  ----------GFLEEARYLFDIMPE--RDCVTWNTVISGYAKTGEMEEALRLFNSMPARN 90
                     G  E AR  FD +P   R+ VTW  ++ GYA+  EME A  +F  MP RN
Sbjct: 66  IEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRN 125

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGS 150
             +W++MISG+ + G+V  A   FDR+P R+  + ++L+SG  QNG  +EA     K   
Sbjct: 126 FFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGK--M 183

Query: 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
           + +G E       +++    Q G ++  +K+   +         +   K N    N ++ 
Sbjct: 184 QAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMM--------NHKGIKLNQFVLNGLVD 235

Query: 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT 266
            YAK GD+ +AR IFE M  R+   WN+MISG+      +EA   F +M      PD +T
Sbjct: 236 MYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEIT 295

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVS----WNSMIAGCETNKDYEGAIKLFIQMQ 322
           + +++S  A  G +   L+ F RM +  L +    +  +I         + A  L  +M 
Sbjct: 296 FLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMP 355

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIV 381
           V   KP+   + ++L    G   +HL M++   V + ++  D  I++   + Y     I 
Sbjct: 356 V---KPNDVVWGALL----GACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIY 408

Query: 382 EARIIFEEMKLLK 394
            A   +E+ + ++
Sbjct: 409 AASDRWEKAEKMR 421



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 82/149 (55%), Gaps = 10/149 (6%)

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           I  +L+ MYA+CG +V++R +F+ M   +N V+WNAMI G   +G +  A+ LF+ M   
Sbjct: 2   IGTSLVCMYAKCGNVVDSRKVFDYMP-ERNAVTWNAMICGYLGNGDSKSAVLLFEKMS-- 58

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
             + T +T+I ++   A +G  E  R+ F  + +E      +  +  +VD   R+  +E 
Sbjct: 59  --IRTAVTWIEMIDGFARSGDTETARRFFDDVPSEL---RNVVTWTVMVDGYARNAEMEA 113

Query: 486 AMDLIKGMPFEPDKAVWGALL-GACRVHN 513
           A ++ +GMP + +   W +++ G C+  N
Sbjct: 114 AREVFEGMP-QRNFFAWSSMISGYCKKGN 141


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 190/642 (29%), Positives = 325/642 (50%), Gaps = 94/642 (14%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
            + +AR +FD+MP +++ S N+++S Y SS   G L  A++LF   P R+  TW  ++  
Sbjct: 58  HLHRARAMFDQMPHKNIFSLNLILSAYSSS---GDLPAAQHLFLSSPHRNATTWTIMMRA 114

Query: 70  YAKTGEMEEALRLFNSM------PARNVVS----------------------------WN 95
           +A  G   +AL LF +M      P R  V+                             N
Sbjct: 115 HAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCN 174

Query: 96  AMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLV---KCG--- 149
            ++  + ++G +A A   F  M  +D+ + +A++ G  + G   +A ++     + G   
Sbjct: 175 TLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPA 234

Query: 150 ---------SRCDGGEDLVRAY------------------NTLIVGYGQRGRVEEARKLF 182
                    +   G   L+  +                  N+L+  Y +   +++ R+LF
Sbjct: 235 THFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLF 294

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNT 238
           D++P            +R+ VS+N +I  YA      +   +F +M     +R    + T
Sbjct: 295 DEMP------------ERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYAT 342

Query: 239 MISGY-----IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           M+S       +H+     A  + + +   D L  NA++  Y++ G L+ A   F    +K
Sbjct: 343 MLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAKSNFSNRSEK 401

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           + +SW ++I G   N  +E A++LF  M+  G +PDR TFSSI+  SS +  + LG Q+H
Sbjct: 402 SAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLH 461

Query: 354 QMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
             + ++     V   + L+ MYA+CG + EA   F+EM   +N +SWNA+I   A +G A
Sbjct: 462 SYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPE-RNSISWNAVISAYAHYGEA 520

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
             A+++F+ M      P  +TF+SVL+AC+H GL +E  ++F  M ++Y I P  EH+A 
Sbjct: 521 KNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYAC 580

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           ++D +GR G       ++  MPF+ D  +W ++L +CR+H N ELA+VAA+ L  +EP +
Sbjct: 581 VIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTD 640

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +TPYV+L N+YA  G+W+DA  V+ +M+   ++K +GYSWV+
Sbjct: 641 ATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVE 682



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 100/426 (23%), Positives = 171/426 (40%), Gaps = 110/426 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++  Y K   +A AR++F EM  +D V++N M+ G       G   +A  LF  M     
Sbjct: 176 LLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMG---CSKEGLHTQALQLFAAMRRAGI 232

Query: 59  -------------------------------------DCVTWNTVISGYAKTGEMEEALR 81
                                                +    N+++  Y+K   +++  R
Sbjct: 233 PATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRR 292

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--GRDS-----ASLSALVSGL-- 132
           LF+ MP R+ VS+N +I+ +  N   A  +  F  M   G D      A++ ++   L  
Sbjct: 293 LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPD 352

Query: 133 IQNGELDEAARVLV-----------------KCG-------SRCDGGEDLVRAYNTLIVG 168
           +  G+   A  VL+                 KCG       +  +  E    ++  LI G
Sbjct: 353 VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 412

Query: 169 YGQRGRVEEARKLFD---KIPVNCDR----------------GEGN------VR--FKRN 201
           Y Q G+ EEA +LF    +  +  DR                G G       +R  +K +
Sbjct: 413 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 472

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           + S + ++  YAK G +  A   F++M ER++ SWN +IS Y H  + + A  +F  M H
Sbjct: 473 VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 532

Query: 262 ----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYEGAIK 316
               PD++T+ ++++  +  G  +  + +F  M  +  +S W    A C    D  G + 
Sbjct: 533 CGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYA-CVI--DTLGRVG 589

Query: 317 LFIQMQ 322
            F Q+Q
Sbjct: 590 CFSQVQ 595



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 27/221 (12%)

Query: 1   MISGYVKRREMAKARKLFDEM------PQRDVVSWNVMISGYISSRGSGFLEEARYLFDI 54
           +I+GYV+  +  +A +LF +M      P R   S  +  S  ++  G G  +   YL   
Sbjct: 409 LITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLG-RQLHSYLIRS 467

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
             +    + + ++  YAK G ++EALR F+ MP RN +SWNA+IS +   G+  NAI+ F
Sbjct: 468 GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMF 527

Query: 115 DRMP----GRDSASLSALVSGLIQNGELDEAARV--LVKCGSRCDGGEDLVRAYNTLIVG 168
           + M       DS +  ++++    NG  DE  +   L+K        ++    Y  +I  
Sbjct: 528 EGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKE---HYACVIDT 584

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
            G+ G   + +K+  ++P           FK + + W S++
Sbjct: 585 LGRVGCFSQVQKMLVEMP-----------FKADPIIWTSIL 614


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 185/503 (36%), Positives = 268/503 (53%), Gaps = 48/503 (9%)

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN 135
            E +LR+F+ +   NV  WN MI   ++N +   AI  +  M                  
Sbjct: 88  FESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEM------------------ 129

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
                     V   SR +        Y  ++      G V E  ++   +  +   G+G+
Sbjct: 130 ----------VVAHSRPNK-----YTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGH 174

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFE-QMLERDTFSWNTMISGYIHVLDMEEASN 254
           +         +S I  YA  G +V AR I + +  E D   WN MI GY+   ++E A  
Sbjct: 175 I--------LSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARE 226

Query: 255 LFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
           LF  MP    + TWNAM+SG+++ G +E+A +FF  M +++ +SW++MI G      +  
Sbjct: 227 LFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFME 286

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALIT 372
           A+++F QMQ E  +P +    S+LS  + +  L  G  IH    +  I  D  +  +L+ 
Sbjct: 287 ALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVD 346

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MYA+CG I  A  +FE+M   K V SWNAMIGG A HG A +A++LF  M    + P  I
Sbjct: 347 MYAKCGRIDLAWEVFEKMSN-KEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEI 402

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TF+ VL+ACAH GLV++G   F SM  EYG+EP+IEH+  +VD++GR G L +A  ++  
Sbjct: 403 TFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSS 462

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
           +P EP  AVWGALLGACR H NVEL +   + L+++EP+NS  Y LL N+YA  GRW++ 
Sbjct: 463 IPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEV 522

Query: 553 NEVRLLMKSNNIKKPTGYSWVDF 575
            EVR LMK   IK   G S +D 
Sbjct: 523 GEVRKLMKERGIKTTPGTSIIDL 545



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 184/430 (42%), Gaps = 74/430 (17%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           NV  + Y+S       E +  +FD + + +   WN +I    +  E  +A+ L+  M   
Sbjct: 79  NVSTNRYLS------FESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVA 132

Query: 90  ----NVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEA 141
               N  ++ A++     +G VA  ++    +     G D   LS+ +      G L EA
Sbjct: 133 HSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEA 192

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            R+L        GGE     +N +I GY + G VE AR+LF+ +P   DR          
Sbjct: 193 RRILDD-----KGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMP---DRS--------M 236

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           I +WN+MI  +++ G V  ARE F++M ERD  SW+ MI GYI      EA  +F +M  
Sbjct: 237 ISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQK 296

Query: 262 ----------PDTLT------------W-----------------NAMVSGYAQIGNLEL 282
                     P  L+            W                  ++V  YA+ G ++L
Sbjct: 297 EKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDL 356

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A + F++M  K + SWN+MI G   +   E AI LF +M +    P+  TF  +L+  + 
Sbjct: 357 AWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDI---YPNEITFVGVLNACAH 413

Query: 343 IVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
              +  G+ I   + K   V P +     ++ +  R G + EA  +   +        W 
Sbjct: 414 GGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWG 473

Query: 401 AMIGGCASHG 410
           A++G C  HG
Sbjct: 474 ALLGACRKHG 483



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 164/355 (46%), Gaps = 31/355 (8%)

Query: 2   ISGYVKRREMAKARKLFDEMP-QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           I  Y     + +AR++ D+   + D V WN MI GY+     G +E AR LF+ MP+R  
Sbjct: 180 IRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRF---GEVEAARELFEGMPDRSM 236

Query: 61  V-TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
           + TWN +ISG+++ G +E A   F+ M  R+ +SW+AMI G++Q G    A+E F +M  
Sbjct: 237 ISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQK 296

Query: 120 RD----SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
                    L +++S     G LD+  R +     R     D V    +L+  Y + GR+
Sbjct: 297 EKIRPRKFVLPSVLSACANLGALDQ-GRWIHTYAKRNSIQLDGVLG-TSLVDMYAKCGRI 354

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LERDTF 234
           + A ++F+K+              + + SWN+MI   A  G    A ++F +M +  +  
Sbjct: 355 DLAWEVFEKMS------------NKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIYPNEI 402

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKR 289
           ++  +++   H   +++   +F  M       P    +  +V    + G L  A      
Sbjct: 403 TFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSS 462

Query: 290 MP-QKNLVSWNSMIAGCETNKDYEGAIKL-FIQMQVEGEKPDRHTFSSILSMSSG 342
           +P +     W +++  C  + + E   ++  I +++E +   R+T  S +   +G
Sbjct: 463 IPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAG 517



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 154/339 (45%), Gaps = 39/339 (11%)

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH-PDTLTWNAMVSGYAQIG-----NLELALDFFKRM 290
           NT  +  +H   +++A  L ++  H  D+    ++V  YA +      + E +L  F  +
Sbjct: 41  NTQCTTSLH--HLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFV 98

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
            + N+  WN MI  C  N +   AI L+ +M V   +P+++T+ ++L   S    +  G+
Sbjct: 99  RKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGV 158

Query: 351 QIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           Q+H  +V   +  D  I ++ I MYA  G +VEAR I ++     + V WNAMI G    
Sbjct: 159 QVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRF 218

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G    A ELF+ M    ++ T+   IS  S C   G+VE  R+ F  M     I      
Sbjct: 219 GEVEAARELFEGMPDRSMISTWNAMISGFSRC---GMVEVAREFFDEMKERDEIS----- 270

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGACR----------VHNNVE 516
           +++++D   + G   +A+++   M  E   P K V  ++L AC           +H   +
Sbjct: 271 WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAK 330

Query: 517 LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
              +  + ++            L +MYA  GR D A EV
Sbjct: 331 RNSIQLDGVLGTS---------LVDMYAKCGRIDLAWEV 360



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 39/300 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVS-WNVMISGYISSRGSGFLEEARYLFDIMPERD 59
           MI GY++  E+  AR+LF+ MP R ++S WN MISG+  SR  G +E AR  FD M ERD
Sbjct: 211 MIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGF--SR-CGMVEVAREFFDEMKERD 267

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIE---FFDR 116
            ++W+ +I GY + G   EAL +F+ M    +     ++   L       A++   +   
Sbjct: 268 EISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHT 327

Query: 117 MPGRDSASL-----SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
              R+S  L     ++LV    + G +D A  V  K  ++       V ++N +I G   
Sbjct: 328 YAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNK------EVSSWNAMIGGLAM 381

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            GR E+A  LF K+ +             N +++  ++   A  G V     IF  M  R
Sbjct: 382 HGRAEDAIDLFSKMDI-----------YPNEITFVGVLNACAHGGLVQKGLTIFNSM--R 428

Query: 232 DTFSWNTMISGYIHVLD-------MEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELA 283
             +     I  Y  ++D       + EA  +   +P  P    W A++    + GN+EL 
Sbjct: 429 KEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELG 488


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 210/633 (33%), Positives = 317/633 (50%), Gaps = 82/633 (12%)

Query: 1   MISGYVKRREMAKARKLF--DEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP-- 56
           +I  Y   R++  A  LF  D  P    VS   +++ Y ++     L  A   FD +P  
Sbjct: 65  LIHLYTLSRDLPAAATLFCADPCP----VSATSLVAAYAAADR---LPAAVSFFDAVPPA 117

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV-----SWNAMIS--GFLQNGDVAN 109
            RD V  N VIS YA+      A+ +F S+ A   +     S+ A++S  G L N  V +
Sbjct: 118 RRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRH 177

Query: 110 AIEF----FDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTL 165
             +          G   +  +ALV+ L    E  EA R   K        +DL   + T+
Sbjct: 178 CAQLHCSVLKSGAGGALSVCNALVA-LYMKCESPEATRDARKVLDEMPNKDDLT--WTTM 234

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           +VGY +RG V  AR +F+++    D            V WN+MI  Y  +G  V A E+F
Sbjct: 235 VVGYVRRGDVGAARSVFEEVDGKFD------------VVWNAMISGYVHSGMAVEAFELF 282

Query: 226 EQM-LER---DTFSW---------------------------------------NTMISG 242
            +M LER   D F++                                       N +++ 
Sbjct: 283 RRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTF 342

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
           Y    ++  A  +F  M   D ++WN ++SGY +   L+ A++ F+ MP KN +SW  M+
Sbjct: 343 YSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMV 402

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP 362
           +G       E A+KLF +M+ E  KP  +T++  ++    +  L  G Q+H  + +    
Sbjct: 403 SGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFE 462

Query: 363 DV-PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
                 NALITMYARCGA+ EA ++F  M  + +V SWNAMI     HG   EALELF  
Sbjct: 463 GSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSV-SWNAMISALGQHGHGREALELFDR 521

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M +  + P  I+F++VL+AC H+GLV+EG ++F+SM  ++GI P  +H+  L+D++GR G
Sbjct: 522 MVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAG 581

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
           R+ +A DLIK MPFEP  ++W A+L  CR   ++EL   AA+ L K+ P++   Y+LL N
Sbjct: 582 RIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSN 641

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            Y+  G W DA  VR LM+   +KK  G SW++
Sbjct: 642 TYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIE 674


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 192/621 (30%), Positives = 325/621 (52%), Gaps = 69/621 (11%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DC 60
           YV   ++ + RK+FD++    V  WN+++S Y      G   E+  LF  M +     +C
Sbjct: 139 YVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKI---GNFRESVSLFKKMQKLGVVGNC 195

Query: 61  VTW-----------------------------------NTVISGYAKTGEMEEALRLFNS 85
            T+                                   N++I+ Y K G +E A  LF+ 
Sbjct: 196 YTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDE 255

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-SASLSALVSGLIQNGELDEAA-- 142
           +   +VVSWN+MI+G + NG   N +E F +M        L+ LVS L+    +   +  
Sbjct: 256 LSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLG 315

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
           R L   G +    E++V + NTL+  Y + G +  A ++F K+                I
Sbjct: 316 RALHGFGVKACFSEEVVFS-NTLLDMYSKCGNLNGATEVFVKMG------------DTTI 362

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNL--- 255
           VSW S+I  Y + G    A  +F++M  +    D ++  +++        +++  ++   
Sbjct: 363 VSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSY 422

Query: 256 FVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
            +K      L   NA+++ YA+ G++E A   F ++P K++VSWN+MI G   N     A
Sbjct: 423 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEA 482

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITM 373
           ++LF+ MQ +  KPD  T + +L   +G+  L  G +IH  ++ +    D+ +  AL+ M
Sbjct: 483 LELFLDMQKQF-KPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDM 541

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           YA+CG +V A+++F+ M   K+++SW  MI G   HGF  EA+  F  MR   + P   +
Sbjct: 542 YAKCGLLVLAQLLFD-MIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESS 600

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           F ++L+AC+H+GL+ EG + F SM NE G+EP++EH+A +VD++ R G L  A   I+ M
Sbjct: 601 FSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESM 660

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           P +PD  +WG LL  CR+H++V+LA+  AE + ++EP+N+  YV+L N+YA+  +W++  
Sbjct: 661 PIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVK 720

Query: 554 EVRLLMKSNNIKKPTGYSWVD 574
           ++R  M+    K+  G SW++
Sbjct: 721 KLRKRMQKRGFKQNPGCSWIE 741



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/471 (24%), Positives = 219/471 (46%), Gaps = 39/471 (8%)

Query: 49  RYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVA 108
           R++F   P R C+  +TV    + T       +           + NA I+ F + GD+ 
Sbjct: 30  RFIFFKQPRRTCLLHSTVCVSPSFTNTTHSVTQ-----------NQNAKINKFCEMGDLR 78

Query: 109 NAIEFFDRMPGRDSA--SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166
           NAIE   +    +    S  +++    +   L++  RV     S     ++ + A   L+
Sbjct: 79  NAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGA--KLV 136

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
             Y   G + + RK+FDKI                +  WN ++  YAK G+   +  +F+
Sbjct: 137 FMYVNCGDLVQGRKIFDKI------------MNDKVFLWNLLMSEYAKIGNFRESVSLFK 184

Query: 227 QMLER----DTFSWNTMISGYIHVLDMEEASNL---FVKMPH-PDTLTWNAMVSGYAQIG 278
           +M +     + +++  ++  +  +  ++E   +    +K+    +T   N++++ Y + G
Sbjct: 185 KMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFG 244

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
            +E A + F  + + ++VSWNSMI GC  N      +++FIQM + G + D  T  S+L 
Sbjct: 245 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLV 304

Query: 339 MSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
             + I +L LG  +H    K     +V  +N L+ MY++CG +  A  +F +M     +V
Sbjct: 305 ACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG-DTTIV 363

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SW ++I      G  ++A+ LF  M+S  V P   T  S++ ACA +  +++GR    S 
Sbjct: 364 SWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD-VHSY 422

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           V + G+   +    +L+++  + G +E+A  +   +P + D   W  ++G 
Sbjct: 423 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMIGG 472



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 208/461 (45%), Gaps = 69/461 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-----FLE--------- 46
           +I+ Y K   +  A  LFDE+ + DVVSWN MI+G + +  SG     F++         
Sbjct: 236 LIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVD 295

Query: 47  --------------------EARYLFDIMP--ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                                A + F +      + V  NT++  Y+K G +  A  +F 
Sbjct: 296 LTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFV 355

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            M    +VSW ++I+ +++ G  ++AI  FD M  +    D  +++++V     +  LD+
Sbjct: 356 KMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDK 415

Query: 141 AARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
              V   ++K G     G +L    N LI  Y + G VEEAR +F KIPV          
Sbjct: 416 GRDVHSYVIKNGM----GSNL-PVTNALINMYAKCGSVEEARLVFSKIPV---------- 460

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIF---EQMLERDTFSWNTMISGYIHVLDMEEA-- 252
             ++IVSWN+MI  Y++      A E+F   ++  + D  +   ++     +  +++   
Sbjct: 461 --KDIVSWNTMIGGYSQNLLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGRE 518

Query: 253 --SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
              ++  +    D     A+V  YA+ G L LA   F  +P+K+L+SW  MIAG   +  
Sbjct: 519 IHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGF 578

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINN 368
              AI  F +M++ G +PD  +FS+IL+  S    L+ G +    +     V P +    
Sbjct: 579 GNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYA 638

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            ++ + AR G + +A    E M +  +   W  ++ GC  H
Sbjct: 639 CVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIH 679


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 199/581 (34%), Positives = 308/581 (53%), Gaps = 72/581 (12%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------ 117
           ++++  Y K G +E+A ++F+SM  +NVV+WN+MI G++QNG    AI+ F  M      
Sbjct: 221 SSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIE 280

Query: 118 PGR--------DSASLSALVSG-------LIQNGELDEA-ARVLVKCGSRCDGGEDL--- 158
           P R         SA+L AL+ G       ++ + +LD      ++   S+    ED    
Sbjct: 281 PTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELV 340

Query: 159 --------VRAYNTLIVGYGQRGRVEEARKL----------FDKIPV-----------NC 189
                   V  +N LI  Y Q  +V +A  +          FD + +           N 
Sbjct: 341 FSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNI 400

Query: 190 DRG-EGNV-----RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
             G EG+        + ++V  NS+I  YAK   +  AR++F+   ERD   WNT+++ Y
Sbjct: 401 KLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAY 460

Query: 244 IHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMP----QKNL 295
             V    EA  LF +M      P+ ++WN+++ G+ + G +  A D F +M     Q NL
Sbjct: 461 AQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNL 520

Query: 296 VSWNSMIAG-CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           ++W ++I+G  ++   YE AI  F +MQ  G +P   + +S+L   + I  L  G  IH 
Sbjct: 521 ITWTTLISGLAQSGFGYE-AILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHG 579

Query: 355 MVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
            +T+      VP+  +L+ MYA+CG+I EA+ +F  M   K +  +NAMI   A HG A 
Sbjct: 580 FITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSS-KELPIYNAMISAYALHGQAV 638

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           EAL LFK ++   + P  ITF S+LSAC+HAGLV EG   F  MV+++ + P +EH+  +
Sbjct: 639 EALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCV 698

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           V ++ R G L++A+ LI  MPF+PD  + G+LL ACR H+ +EL +  ++ L K+EP NS
Sbjct: 699 VSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNS 758

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             YV L N YA  GRW + + +R LMK   ++K  G SW+ 
Sbjct: 759 GNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQ 799



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 137/525 (26%), Positives = 241/525 (45%), Gaps = 59/525 (11%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           YAK    E A+RLF+ +  RNV SW A++    + G   +A+  F  M            
Sbjct: 126 YAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQ----------- 174

Query: 130 SGLIQNGELDE---AARVLVKCGS-RCDGGEDLVRAY-------------NTLIVGYGQR 172
               +NG   +      VL  CGS +  G    V  Y             ++L+  YG+ 
Sbjct: 175 ----ENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKC 230

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM---- 228
           G +E+ARK+FD +             ++N+V+WNSMI+ Y + G    A ++F  M    
Sbjct: 231 GVLEDARKVFDSM------------VEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEG 278

Query: 229 LERDTFSWNTMISGYIHVLDMEEASN----LFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
           +E    +  + +S   ++  + E         +     D +  +++++ Y+++G +E A 
Sbjct: 279 IEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAE 338

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
             F RM +K++V+WN +I+    +     A+ +   M+ E  + D  T SSILS S+   
Sbjct: 339 LVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTS 398

Query: 345 DLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           ++ LG + H   + + +  DV + N++I MYA+C  I +AR +F+     +++V WN ++
Sbjct: 399 NIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTT-ERDLVLWNTLL 457

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
              A  G + EAL+LF  M+   V P  I++ SV+      G V E +  F  M    G 
Sbjct: 458 AAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQM-QSLGF 516

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMP---FEPDKAVWGALLGACRVHNNVELAQV 520
           +P +  + +L+  + + G   +A+   + M      P  A   ++L AC    ++   + 
Sbjct: 517 QPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRA 576

Query: 521 AAEALMKVEPENSTPYVL-LYNMYADVGRWDDANEVRLLMKSNNI 564
               + + E   S P    L +MYA  G  D+A +V  +M S  +
Sbjct: 577 IHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKEL 621



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 207/462 (44%), Gaps = 31/462 (6%)

Query: 93  SWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRC 152
           S+   IS   ++G +  ++     M   D      +   L+Q    + A     +  +R 
Sbjct: 46  SYFHHISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARI 105

Query: 153 DGGEDLVR----AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
               D           L+V Y +    E A +LF ++ V            RN+ SW ++
Sbjct: 106 LKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRV------------RNVFSWAAI 153

Query: 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMI------SGYIHVLDMEEASNLFV-KMPH 261
           +    + G    A   F +M E   F  N ++       G + ++ + +  + +V KM  
Sbjct: 154 VGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGF 213

Query: 262 -PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                  +++V  Y + G LE A   F  M +KN+V+WNSMI G   N   + AI +F  
Sbjct: 214 GACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYD 273

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGA 379
           M+VEG +P R T +S LS S+ +  L  G Q H + +  ++  D  + +++I  Y++ G 
Sbjct: 274 MRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGL 333

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           I +A ++F  M L K+VV+WN +I     H    +AL +   MRS  +    +T  S+LS
Sbjct: 334 IEDAELVFSRM-LEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILS 392

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           A A    ++ G++     +    +E  +    S++D+  +  R++DA  +      E D 
Sbjct: 393 ASAVTSNIKLGKEGHCYCIRR-NLESDVVVANSIIDMYAKCERIDDARKVFDSTT-ERDL 450

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
            +W  LL A   +  V L+  A +   +++ ++  P V+ +N
Sbjct: 451 VLWNTLLAA---YAQVGLSGEALKLFYQMQFDSVPPNVISWN 489



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 156/334 (46%), Gaps = 39/334 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARY--LFDIMPER 58
           +I  Y K   +  ARK+FD   +RD+V WN +++ Y     SG   +  Y   FD +P  
Sbjct: 425 IIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPP- 483

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMISGFLQNGDVANAIEFF 114
           + ++WN+VI G+ + G++ EA  +F+ M +     N+++W  +ISG  Q+G    AI FF
Sbjct: 484 NVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFF 543

Query: 115 DRMPGRD-SASLSALVSGLIQNGEL-----DEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
            +M       S++++ S L+   ++       A    +     C      V    +L+  
Sbjct: 544 QKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLS----VPVATSLVDM 599

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y + G ++EA+K+F  +              + +  +N+MI  YA  G  V A  +F+ +
Sbjct: 600 YAKCGSIDEAKKVFHMMS------------SKELPIYNAMISAYALHGQAVEALALFKHL 647

Query: 229 ----LERDTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGN 279
               +E D+ ++ +++S   H   + E  NLF  M      +P    +  +VS  ++ GN
Sbjct: 648 QKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGN 707

Query: 280 LELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
           L+ AL     MP Q +     S++  C  + + E
Sbjct: 708 LDEALRLILTMPFQPDAHILGSLLTACREHHEIE 741


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 201/624 (32%), Positives = 317/624 (50%), Gaps = 65/624 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF---DIMPE 57
           +I  Y++  ++  A KLFD + Q+D V WNVM++GY     S  + +   L     I P 
Sbjct: 175 LIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPN 234

Query: 58  R---DCV------------------------------TWNTVISGYAKTGEMEEALRLFN 84
               DCV                                N+++S Y+K G  ++A++LF 
Sbjct: 235 AVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFR 294

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            M   + V+WN MISG++Q+G +  ++ FF  M       D+ + S+L+  + +   L+ 
Sbjct: 295 MMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEY 354

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             ++   C          +   + LI  Y +   V  A+K+F +    C+          
Sbjct: 355 CRQI--HCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQ----CN--------SV 400

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQML-------ERDTFSWNTMISGYIHVLDMEEAS 253
           ++V + +MI  Y   G  + A E+F  ++       E    S   +I G + +    E  
Sbjct: 401 DVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELH 460

Query: 254 NLFVKMPHPDTLTWN-AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
              +K    +      A++  YA+ G + LA + F R+ ++++VSWNSMI  C  + +  
Sbjct: 461 GFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPS 520

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNALI 371
            AI +F QM V G   D  + S+ LS  + +     G  IH  M+  ++  DV   + LI
Sbjct: 521 AAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLI 580

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-RSFKVLPT 430
            MYA+CG +  A  +F+ MK  KN+VSWN++I    +HG   ++L LF  M       P 
Sbjct: 581 DMYAKCGNLKAAMNVFDTMKE-KNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPD 639

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            ITF+ ++S C H G V+EG + F+SM  +YGI+P+ EH+A +VD+ GR GRL +A + +
Sbjct: 640 QITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETV 699

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           K MPF PD  VWG LLGA R+H NVELA+VA+  LM ++P NS  YVL+ N +A+ G W+
Sbjct: 700 KSMPFPPDAGVWGTLLGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWE 759

Query: 551 DANEVRLLMKSNNIKKPTGYSWVD 574
              +VR LMK   ++K  GYSW++
Sbjct: 760 SVTKVRSLMKEREVQKIPGYSWIE 783



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 125/563 (22%), Positives = 236/563 (41%), Gaps = 98/563 (17%)

Query: 33  ISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNV- 91
           + G  S+ G  F      L  I P      WN++IS + + G + +AL  +  M    V 
Sbjct: 78  MCGSFSNCGKMFYRLDSRLSSIRP------WNSIISSFVRMGLLNQALAFYFKMLCFGVS 131

Query: 92  --------------------------------------VSWNAMISGFLQNGDVANAIEF 113
                                                    +++I  +L+ G +  A + 
Sbjct: 132 PDVSTFPCLVKACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKL 191

Query: 114 FDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           FDR+  +D    + +++G  + G  D   +       R D        ++ ++     + 
Sbjct: 192 FDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSL--MRMDQISPNAVTFDCVLSVCASKL 249

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
            ++   +L   + V+    EG+++        NS++  Y+K G    A ++F  M   DT
Sbjct: 250 LIDLGVQLHGLVVVSGLDFEGSIK--------NSLLSMYSKCGRFDDAIKLFRMMSRADT 301

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLE-------- 281
            +WN MISGY+    MEE+   F +M      PD +T+++++   ++  NLE        
Sbjct: 302 VTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCY 361

Query: 282 -----LALDFF--------------KRMPQK--------NLVSWNSMIAGCETNKDYEGA 314
                ++LD F                M QK        ++V + +MI+G   N     A
Sbjct: 362 IMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDA 421

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITM 373
           +++F  +      P+  T  SIL +  G++ L LG ++H  + K    +   I  A+I M
Sbjct: 422 LEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDM 481

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           YA+CG +  A  IF  +   +++VSWN+MI  CA     + A+++F+ M    +    ++
Sbjct: 482 YAKCGRMNLAYEIFGRLS-KRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVS 540

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
             + LSACA+      G+     M+ ++ +   +   ++L+D+  + G L+ AM++   M
Sbjct: 541 ISAALSACANLPSESFGKAIHGFMI-KHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTM 599

Query: 494 PFEPDKAVWGALLGACRVHNNVE 516
             E +   W +++ A   H  ++
Sbjct: 600 K-EKNIVSWNSIIAAYGNHGKLK 621



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 156/353 (44%), Gaps = 42/353 (11%)

Query: 101 FLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR 160
            L+ G   +A    +R+ G DS +   ++      G      ++  +  SR       +R
Sbjct: 46  LLRQGKQVHAFVIVNRISG-DSYTDERILGMYAMCGSFSNCGKMFYRLDSRLSS----IR 100

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
            +N++I  + + G + +A   + K+                        +C+  + DV +
Sbjct: 101 PWNSIISSFVRMGLLNQALAFYFKM------------------------LCFGVSPDVST 136

Query: 221 AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNL 280
              + +  +    F     +S  +  L M+   N FV          ++++  Y + G +
Sbjct: 137 FPCLVKACVALKNFKGIEFLSDTVSSLGMD--CNEFVA---------SSLIKAYLEYGKI 185

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           ++A   F R+ QK+ V WN M+ G       +  IK F  M+++   P+  TF  +LS+ 
Sbjct: 186 DVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVC 245

Query: 341 SGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           +  + + LG+Q+H +V  + +  +  I N+L++MY++CG   +A  +F  M    + V+W
Sbjct: 246 ASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMS-RADTVTW 304

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
           N MI G    G   E+L  F  M S  VLP  ITF S+L + +    +E  RQ
Sbjct: 305 NCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQ 357



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 140/330 (42%), Gaps = 72/330 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG-SGFLEEARYL------FD 53
           +I  Y K   M  A ++F  + +RD+VSWN MI+    S   S  ++  R +      FD
Sbjct: 478 VIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFD 537

Query: 54  I------------MPER-----------------DCVTWNTVISGYAKTGEMEEALRLFN 84
                        +P                   D  + +T+I  YAK G ++ A+ +F+
Sbjct: 538 CVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFD 597

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELD 139
           +M  +N+VSWN++I+ +  +G + +++  F  M  +     D  +   ++S     G++D
Sbjct: 598 TMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVD 657

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE-----G 194
           E  R   +  ++  G +     Y  ++  +G+ GR+ EA +    +P   D G      G
Sbjct: 658 EGVR-FFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGTLLG 716

Query: 195 NVRFKRNIV-------------SWNS-----MIMCYAKAGDVVSAREIFEQMLERDTFSW 236
             R  +N+               WNS     +   +A  G+  S  ++   M ER+    
Sbjct: 717 ASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWESVTKVRSLMKEREV--- 773

Query: 237 NTMISGYIHVLDMEEASNLFVK--MPHPDT 264
              I GY  + ++ + ++LFV   + HP++
Sbjct: 774 -QKIPGYSWI-EINKITHLFVSGDVNHPES 801


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 201/581 (34%), Positives = 309/581 (53%), Gaps = 72/581 (12%)

Query: 64   NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------ 117
            ++++  Y K G +E+A ++F+SM  +NVV+WN+MI G++QNG    AI+ F  M      
Sbjct: 1316 SSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIE 1375

Query: 118  PGR--------DSASLSALVSG-------LIQNGELDEA-ARVLVKCGSRCDGGEDL--- 158
            P R         SA+L AL+ G       ++ + +LD      ++   S+    ED    
Sbjct: 1376 PTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELV 1435

Query: 159  --------VRAYNTLIVGYGQRGRVEEARKL----------FDKIPV-----------NC 189
                    V  +N LI  Y Q  +V +A  +          FD + +           N 
Sbjct: 1436 FSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNI 1495

Query: 190  DRG-EGNVR-FKRN----IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
              G EG+    +RN    +V  NS+I  YAK   +  AR++F+   ERD   WNT+++ Y
Sbjct: 1496 KLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAY 1555

Query: 244  IHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMP----QKNL 295
              V    EA  LF +M      P+ ++WN+++ G+ + G +  A D F +M     Q NL
Sbjct: 1556 AQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNL 1615

Query: 296  VSWNSMIAG-CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
            ++W ++I+G  ++   YE AI  F +MQ  G +P   + +S+L   + I  L  G  IH 
Sbjct: 1616 ITWTTLISGLAQSGFGYE-AILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHG 1674

Query: 355  MVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
             +T+      VP+  +L+ MYA+CG+I EA+ +F  M   K +  +NAMI   A HG A 
Sbjct: 1675 FITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSS-KELPIYNAMISAYALHGQAV 1733

Query: 414  EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
            EAL LFK ++   + P  ITF S+LSAC+HAGLV EG   F  MV+++ + P +EH+  +
Sbjct: 1734 EALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCV 1793

Query: 474  VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
            V ++ R G L++A+ LI  MPF+PD  + G+LL ACR H+ +EL +  ++ L K+EP NS
Sbjct: 1794 VSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNS 1853

Query: 534  TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
              YV L N YA  GRW + + +R LMK   ++K  G SW+ 
Sbjct: 1854 GNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQ 1894



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 137/525 (26%), Positives = 241/525 (45%), Gaps = 59/525 (11%)

Query: 70   YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
            YAK    E A+RLF+ +  RNV SW A++    + G   +A+  F  M            
Sbjct: 1221 YAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQ----------- 1269

Query: 130  SGLIQNGELDE---AARVLVKCGS-RCDGGEDLVRAY-------------NTLIVGYGQR 172
                +NG   +      VL  CGS +  G    V  Y             ++L+  YG+ 
Sbjct: 1270 ----ENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKC 1325

Query: 173  GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM---- 228
            G +E+ARK+FD +             ++N+V+WNSMI+ Y + G    A ++F  M    
Sbjct: 1326 GVLEDARKVFDSM------------VEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEG 1373

Query: 229  LERDTFSWNTMISGYIHVLDMEEASN----LFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
            +E    +  + +S   ++  + E         +     D +  +++++ Y+++G +E A 
Sbjct: 1374 IEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAE 1433

Query: 285  DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
              F RM +K++V+WN +I+    +     A+ +   M+ E  + D  T SSILS S+   
Sbjct: 1434 LVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTS 1493

Query: 345  DLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
            ++ LG + H   + + +  DV + N++I MYA+C  I +AR +F+     +++V WN ++
Sbjct: 1494 NIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTT-ERDLVLWNTLL 1552

Query: 404  GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
               A  G + EAL+LF  M+   V P  I++ SV+      G V E +  F  M    G 
Sbjct: 1553 AAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQM-QSLGF 1611

Query: 464  EPRIEHFASLVDIVGRHGRLEDAMDLIKGMP---FEPDKAVWGALLGACRVHNNVELAQV 520
            +P +  + +L+  + + G   +A+   + M      P  A   ++L AC    ++   + 
Sbjct: 1612 QPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRA 1671

Query: 521  AAEALMKVEPENSTPYVL-LYNMYADVGRWDDANEVRLLMKSNNI 564
                + + E   S P    L +MYA  G  D+A +V  +M S  +
Sbjct: 1672 IHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKEL 1716



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 205/471 (43%), Gaps = 49/471 (10%)

Query: 93   SWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRC 152
            S+   IS   ++G +  ++     M   D      +   L+Q    + A     +  +R 
Sbjct: 1141 SYFHHISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARI 1200

Query: 153  DGGEDLV----RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
                D           L+V Y +    E A +LF ++ V            RN+ SW ++
Sbjct: 1201 LKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRV------------RNVFSWAAI 1248

Query: 209  IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI-----------------HVLDMEE 251
            +    + G    A   F +M E   F  N ++   +                 +VL M  
Sbjct: 1249 VGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGF 1308

Query: 252  ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
             + +FV          +++V  Y + G LE A   F  M +KN+V+WNSMI G   N   
Sbjct: 1309 GACVFVS---------SSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLN 1359

Query: 312  EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNAL 370
            + AI +F  M+VEG +P R T +S LS S+ +  L  G Q H + +  ++  D  + +++
Sbjct: 1360 QEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSI 1419

Query: 371  ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
            I  Y++ G I +A ++F  M L K+VV+WN +I     H    +AL +   MRS  +   
Sbjct: 1420 INFYSKVGLIEDAELVFSRM-LEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFD 1478

Query: 431  YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
             +T  S+LSA A    ++ G++     +    +E  +    S++D+  +  R++DA  + 
Sbjct: 1479 SVTLSSILSASAVTSNIKLGKEGHCYCIRR-NLESDVVVANSIIDMYAKCERIDDARKVF 1537

Query: 491  KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
                 E D  +W  LL A   +  V L+  A +   +++ ++  P V+ +N
Sbjct: 1538 DSTT-ERDLVLWNTLLAA---YAQVGLSGEALKLFYQMQFDSVPPNVISWN 1584



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 159/331 (48%), Gaps = 33/331 (9%)

Query: 1    MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARY--LFDIMPER 58
            +I  Y K   +  ARK+FD   +RD+V WN +++ Y     SG   +  Y   FD +P  
Sbjct: 1520 IIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPP- 1578

Query: 59   DCVTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMISGFLQNGDVANAIEFF 114
            + ++WN+VI G+ + G++ EA  +F+ M +     N+++W  +ISG  Q+G    AI FF
Sbjct: 1579 NVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFF 1638

Query: 115  DRMP-GRDSASLSALVSGLIQNGELDEA--ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
             +M       S++++ S L+   ++      R +    +R +    +  A  +L+  Y +
Sbjct: 1639 QKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVA-TSLVDMYAK 1697

Query: 172  RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--- 228
             G ++EA+K+F  +              + +  +N+MI  YA  G  V A  +F+ +   
Sbjct: 1698 CGSIDEAKKVFHMMS------------SKELPIYNAMISAYALHGQAVEALALFKHLQKE 1745

Query: 229  -LERDTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLEL 282
             +E D+ ++ +++S   H   + E  NLF  M      +P    +  +VS  ++ GNL+ 
Sbjct: 1746 GIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDE 1805

Query: 283  ALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
            AL     MP Q +     S++  C  + + E
Sbjct: 1806 ALRLILTMPFQPDAHILGSLLTACREHHEIE 1836


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 195/621 (31%), Positives = 320/621 (51%), Gaps = 78/621 (12%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF--------DIMPE-------- 57
           ARKLF+EMPQ  ++S+N++I  Y+     G   +A  +F          +P+        
Sbjct: 68  ARKLFEEMPQSSLLSYNIVIRMYVRE---GLYHDAISVFIRMVSEGVKCVPDGYTYPFVA 124

Query: 58  -------------------------RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV 92
                                    RD    N +++ Y   G++E A  +F+ M  R+V+
Sbjct: 125 KAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVI 184

Query: 93  SWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSAL--VSGLIQNGELDEAARVLV 146
           SWN MISG+ +NG + +A+  FD M       D A++ ++  V G +++ E+      LV
Sbjct: 185 SWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLV 244

Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
           +   R     D +   N L+  Y + GR++EAR +FD++             +R++++W 
Sbjct: 245 E-EKRLG---DKIEVKNALVNMYLKCGRMDEARFVFDRME------------RRDVITWT 288

Query: 207 SMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNL----FVK 258
            MI  Y + GDV +A E+   M    +  +  +  +++S     L + +   L      +
Sbjct: 289 CMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQ 348

Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
             + D +   +++S YA+   ++L    F    + +   W+++IAGC  N+    A+ LF
Sbjct: 349 QVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLF 408

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARC 377
            +M+ E  +P+  T +S+L   + + DL   M IH  +TKT  +  +     L+ +Y++C
Sbjct: 409 KRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKC 468

Query: 378 GAIVEARIIF---EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           G +  A  IF   +E    K+VV W A+I G   HG    AL++F  M    V P  ITF
Sbjct: 469 GTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITF 528

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
            S L+AC+H+GLVEEG   F+ M+  Y    R  H+  +VD++GR GRL++A +LI  +P
Sbjct: 529 TSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIP 588

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANE 554
           FEP   VWGALL AC  H NV+L ++AA  L ++EPEN+  YVLL N+YA +GRW D  +
Sbjct: 589 FEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEK 648

Query: 555 VRLLMKSNNIKKPTGYSWVDF 575
           VR +M++  ++K  G+S ++ 
Sbjct: 649 VRSMMENVGLRKKPGHSTIEI 669



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/466 (22%), Positives = 205/466 (43%), Gaps = 74/466 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           +++ Y+   ++  AR +FD M  RDV+SWN MISGY     +G++ +A  +FD M     
Sbjct: 158 LLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYR---NGYMNDALMMFDWMVNESV 214

Query: 57  ERDCVTW-----------------------------------NTVISGYAKTGEMEEALR 81
           + D  T                                    N +++ Y K G M+EA  
Sbjct: 215 DLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARF 274

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F+ M  R+V++W  MI+G+ ++GDV NA+E    M       ++ ++++LVS      +
Sbjct: 275 VFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALK 334

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           +++  + L     R     D++    +LI  Y +  RV+   ++F               
Sbjct: 335 VND-GKCLHGWAVRQQVYSDII-IETSLISMYAKCKRVDLCFRVFSGAS----------- 381

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
            K +   W+++I    +   V  A  +F++M    +E +  + N+++  Y  + D+ +A 
Sbjct: 382 -KYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAM 440

Query: 254 NLFVKMPHPDTLT----WNAMVSGYAQIGNLELALDFF----KRMPQKNLVSWNSMIAGC 305
           N+   +     ++       +V  Y++ G LE A   F    ++   K++V W ++I+G 
Sbjct: 441 NIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGY 500

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPD 363
             + D   A+++F++M   G  P+  TF+S L+    SG+V+  L +    +     +  
Sbjct: 501 GMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLAR 560

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
                 ++ +  R G + EA  +   +        W A++  C +H
Sbjct: 561 SNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTH 606



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 127/248 (51%), Gaps = 6/248 (2%)

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK--PDRH 331
           YA  G++  A   F+ MPQ +L+S+N +I        Y  AI +FI+M  EG K  PD +
Sbjct: 59  YALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGY 118

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEM 390
           T+  +   +  +  + LG+ +H  + ++    D  + NAL+ MY   G +  AR +F+ M
Sbjct: 119 TYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVM 178

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
           K  ++V+SWN MI G   +G+  +AL +F  M +  V   + T +S+L  C H   +E G
Sbjct: 179 K-NRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMG 237

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
           R   K +V E  +  +IE   +LV++  + GR+++A  +   M    D   W  ++    
Sbjct: 238 RNVHK-LVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRME-RRDVITWTCMINGYT 295

Query: 511 VHNNVELA 518
              +VE A
Sbjct: 296 EDGDVENA 303


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 190/625 (30%), Positives = 323/625 (51%), Gaps = 61/625 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +++ YV    +  A   F  +P + +++WN ++ G ++    G   +A + +  M +   
Sbjct: 73  LVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAV---GHFTKAIHFYHSMLQHGV 129

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPAR---NVVSWNAMISGFLQNGDVANAIEF 113
             D  T+  V+   +    ++    +  +M  +   NV    A+I  F + G V +A   
Sbjct: 130 TPDNYTYPLVLKACSSLHALQLGRWVHETMHGKTKANVYVQCAVIDMFAKCGSVEDARRM 189

Query: 114 FDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           F+ MP RD AS +AL+ G + NGE  EA  +  K  S     + ++ A  +++   G+  
Sbjct: 190 FEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVA--SILPACGRL- 246

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
              EA KL   + V C    G   F+ ++   N++I  Y K GD + A  +F  M+  D 
Sbjct: 247 ---EAVKLGMALQV-CAVRSG---FESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDV 299

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPH-------------------------------- 261
            SW+T+I+GY      +E+  L++ M +                                
Sbjct: 300 VSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNF 359

Query: 262 -------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
                   D +  +A++  YA  G+++ A   F+    K+++ WNSMI G     D+E A
Sbjct: 360 VLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESA 419

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITM 373
              F ++     +P+  T  SIL + + +  L  G +IH  VTK+ +  +V + N+LI M
Sbjct: 420 FFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDM 479

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           Y++CG +     +F++M +++NV ++N MI  C SHG   + L  ++ M+     P  +T
Sbjct: 480 YSKCGFLELGEKVFKQM-MVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVT 538

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           FIS+LSAC+HAGL++ G   + SM+N+YGIEP +EH++ +VD++GR G L+ A   I  M
Sbjct: 539 FISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRM 598

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           P  PD  V+G+LLGACR+HN VEL ++ AE +++++ ++S  YVLL N+YA   RW+D +
Sbjct: 599 PMTPDANVFGSLLGACRLHNKVELTELLAERILQLKADDSGHYVLLSNLYASGKRWEDMS 658

Query: 554 EVRLLMKSNNIKKPTGYSWVDFSPC 578
           +VR ++K   ++K  G SW+    C
Sbjct: 659 KVRSMIKDKGLEKKPGSSWIQVGHC 683



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 123/249 (49%), Gaps = 4/249 (1%)

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
           PH  +   + +V+ Y   G+L+ A   F+ +P K +++WN+++ G      +  AI  + 
Sbjct: 64  PHSSSFA-SQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYH 122

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGA 379
            M   G  PD +T+  +L   S +  L LG  +H+ +      +V +  A+I M+A+CG+
Sbjct: 123 SMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHETMHGKTKANVYVQCAVIDMFAKCGS 182

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           + +AR +FEEM   +++ SW A+I G   +G   EAL LF+ MRS  ++P  +   S+L 
Sbjct: 183 VEDARRMFEEMP-DRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILP 241

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           AC     V+ G    +      G E  +    +++D+  + G   +A  +   M +  D 
Sbjct: 242 ACGRLEAVKLGMA-LQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYS-DV 299

Query: 500 AVWGALLGA 508
             W  L+  
Sbjct: 300 VSWSTLIAG 308


>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
          Length = 594

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 187/562 (33%), Positives = 292/562 (51%), Gaps = 62/562 (11%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEAL 80
           D   WN +I  Y  S G      A  LF +M E     D  + + V+   ++   ++E +
Sbjct: 65  DPYLWNAVIKSY--SHGID-PRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFLKEGM 121

Query: 81  RLFNSMPARNVVS----WNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG 136
           ++   +    + S     N +I  +L+ G +  A + FDRMP RDS S            
Sbjct: 122 QIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVS------------ 169

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
                                    YN++I GY + G ++ A KLFD +P          
Sbjct: 170 -------------------------YNSMIDGYVKCGLMKSAHKLFDLMP---------- 194

Query: 197 RFKRNIVSWNSMIMCYAKAGD-VVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
           R  +N++SWNSMI  YA+  D + +A ++F +M E+D  SWN+MI+G +    +E+A  L
Sbjct: 195 REIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCVKHGRIEDAKGL 254

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           F  MP  D +TW  M+ GYA++G +  A   F +M Q+++V+ NSM+AG   NK +  A+
Sbjct: 255 FDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHMEAL 314

Query: 316 KLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITM 373
           ++F  M+ +    PD  T   +LS  + +  L   M +H  + +   P    +  ALI M
Sbjct: 315 EIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGGKLGVALIDM 374

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           +++CG+I  A  +FE ++  K++  WNAMIGG A HG    A ++   +    + P  IT
Sbjct: 375 HSKCGSIQHAISVFEGIEN-KSIDHWNAMIGGLAIHGLGELAFDMLMQIERCSIQPDXIT 433

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           FI VL+AC+H+GLV+EG   F+ M  ++ IEPR++H+  LVD++ R G +E A  LI+ M
Sbjct: 434 FIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSIELAKHLIEDM 493

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           P EP+  +W + L AC  H   E  ++ A+ L+     N + YVLL NMYA +G W D  
Sbjct: 494 PMEPNDVIWRSFLSACSTHEEFETGELVAKHLILQAGYNPSSYVLLSNMYASLGMWKDVR 553

Query: 554 EVRLLMKSNNIKKPTGYSWVDF 575
            VR++MK   + K  G SW++ 
Sbjct: 554 RVRMMMKQRKLHKIPGCSWIEL 575



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 211/424 (49%), Gaps = 68/424 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--R 58
           +I  Y+K   +  AR++FD MPQRD VS+N MI GY+     G ++ A  LFD+MP   +
Sbjct: 142 LIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVK---CGLMKSAHKLFDLMPREIK 198

Query: 59  DCVTWNTVISGYAKTGE-MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           + ++WN++ISGYA+T + +  A +LF+ MP ++++SWN+MI+G +++G + +A   FD M
Sbjct: 199 NLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCVKHGRIEDAKGLFDVM 258

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P RD                                     V  + T+I GY + G V  
Sbjct: 259 PRRD-------------------------------------VVTWATMIDGYAKLGFVHH 281

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-----LERD 232
           A+ LFD++             +R++V+ NSM+  Y +    + A EIF  M     L  D
Sbjct: 282 AKSLFDQM------------HQRDVVACNSMMAGYVQNKYHMEALEIFNDMEKDSHLSPD 329

Query: 233 TFSWNTMISGYIHVLDMEEASNLFV-----KMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
             +   ++S    +  + +A ++ V     + P    L   A++  +++ G+++ A+  F
Sbjct: 330 ETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGGKLG-VALIDMHSKCGSIQHAISVF 388

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
           + +  K++  WN+MI G   +   E A  + +Q++    +PD  TF  +L+  S    + 
Sbjct: 389 EGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERCSIQPDXITFIGVLNACSHSGLVK 448

Query: 348 LGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
            G+   +++ +   + P +     L+ + +R G+I  A+ + E+M +  N V W + +  
Sbjct: 449 EGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSIELAKHLIEDMPMEPNDVIWRSFLSA 508

Query: 406 CASH 409
           C++H
Sbjct: 509 CSTH 512


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 190/643 (29%), Positives = 325/643 (50%), Gaps = 94/643 (14%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
            + +AR +FD+MP +++ S N+++S Y SS   G L  A++LF   P R+  TW  ++  
Sbjct: 58  HLHRARAMFDQMPHKNIFSLNLILSAYSSS---GDLPAAQHLFLSSPHRNATTWTIMMRA 114

Query: 70  YAKTGEMEEALRLFNSM------PARNVVS----------------------------WN 95
           +A  G   +AL LF +M      P R  V+                             N
Sbjct: 115 HAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCN 174

Query: 96  AMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLV---KCG--- 149
            ++  + ++G +A A   F  M  +D+ + +A++ G  + G   +A ++     + G   
Sbjct: 175 TLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPA 234

Query: 150 ---------SRCDGGEDLVRAY------------------NTLIVGYGQRGRVEEARKLF 182
                    +   G   L+  +                  N+L+  Y +   +++ R+LF
Sbjct: 235 THFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLF 294

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNT 238
           D++P            +R+ VS+N +I  YA      +   +F +M     +R    + T
Sbjct: 295 DEMP------------ERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYAT 342

Query: 239 MIS-----GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           M+S       +H+     A  + + +   D L  NA++  Y++ G L+ A   F    +K
Sbjct: 343 MLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAKSNFSNRSEK 401

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           + +SW ++I G   N  +E A++LF  M+  G +PDR TFSSI+  SS +  + LG Q+H
Sbjct: 402 SAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLH 461

Query: 354 QMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
             + ++     V   + L+ MYA+CG + EA   F+EM   +N +SWNA+I   A +G A
Sbjct: 462 SYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPE-RNSISWNAVISAYAHYGEA 520

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
             A+++F+ M      P  +TF+SVL+AC+H GL +E  ++F  M ++Y I P  EH+A 
Sbjct: 521 KNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYAC 580

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           ++D +GR G       ++  MPF+ D  +W ++L +CR+H N ELA+VAA+ L  +EP +
Sbjct: 581 VIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTD 640

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           +TPYV+L N+YA  G+W+DA  V+ +M+   ++K +GYSWV+ 
Sbjct: 641 ATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEI 683



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/426 (23%), Positives = 171/426 (40%), Gaps = 110/426 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++  Y K   +A AR++F EM  +D V++N M+ G       G   +A  LF  M     
Sbjct: 176 LLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMG---CSKEGLHTQALQLFAAMRRAGI 232

Query: 59  -------------------------------------DCVTWNTVISGYAKTGEMEEALR 81
                                                +    N+++  Y+K   +++  R
Sbjct: 233 PATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRR 292

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--GRDS-----ASLSALVSGL-- 132
           LF+ MP R+ VS+N +I+ +  N   A  +  F  M   G D      A++ ++   L  
Sbjct: 293 LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPD 352

Query: 133 IQNGELDEAARVLV-----------------KCG-------SRCDGGEDLVRAYNTLIVG 168
           +  G+   A  VL+                 KCG       +  +  E    ++  LI G
Sbjct: 353 VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 412

Query: 169 YGQRGRVEEARKLFD---KIPVNCDR----------------GEGN------VR--FKRN 201
           Y Q G+ EEA +LF    +  +  DR                G G       +R  +K +
Sbjct: 413 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 472

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           + S + ++  YAK G +  A   F++M ER++ SWN +IS Y H  + + A  +F  M H
Sbjct: 473 VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 532

Query: 262 ----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYEGAIK 316
               PD++T+ ++++  +  G  +  + +F  M  +  +S W    A C    D  G + 
Sbjct: 533 CGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYA-CVI--DTLGRVG 589

Query: 317 LFIQMQ 322
            F Q+Q
Sbjct: 590 CFSQVQ 595



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 27/221 (12%)

Query: 1   MISGYVKRREMAKARKLFDEM------PQRDVVSWNVMISGYISSRGSGFLEEARYLFDI 54
           +I+GYV+  +  +A +LF +M      P R   S  +  S  ++  G G  +   YL   
Sbjct: 409 LITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLG-RQLHSYLIRS 467

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
             +    + + ++  YAK G ++EALR F+ MP RN +SWNA+IS +   G+  NAI+ F
Sbjct: 468 GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMF 527

Query: 115 DRMP----GRDSASLSALVSGLIQNGELDEAARV--LVKCGSRCDGGEDLVRAYNTLIVG 168
           + M       DS +  ++++    NG  DE  +   L+K        ++    Y  +I  
Sbjct: 528 EGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKE---HYACVIDT 584

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
            G+ G   + +K+  ++P           FK + + W S++
Sbjct: 585 LGRVGCFSQVQKMLVEMP-----------FKADPIIWTSIL 614


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 183/531 (34%), Positives = 263/531 (49%), Gaps = 72/531 (13%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L  AR L    PE D   +NT++ GY+++ E   ++ +F  M  +  V  ++    F   
Sbjct: 47  LPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAF--- 103

Query: 105 GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT 164
             V  A+E F  +         AL  GL                       E  +    T
Sbjct: 104 --VIKAVENFRSLRTGFQMHCQALKHGL-----------------------ESHLFVGTT 138

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           LI  YG  G VE ARK+FD++             + N+V+WN++I    +  DV  AREI
Sbjct: 139 LIGMYGGCGCVEFARKVFDEM------------HQPNLVAWNAVITACFRGNDVAGAREI 186

Query: 225 FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
           F++ML R+  SWN M++GYI   ++E A  +F +MPH D ++W+ M+ G A  G+   + 
Sbjct: 187 FDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESF 246

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
            +F+                               ++Q  G  P+  + + +LS  S   
Sbjct: 247 LYFR-------------------------------ELQRAGMSPNEVSLTGVLSACSQSG 275

Query: 345 DLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
               G  +H  V K      V +NNALI MY+RCG +  AR++FE M+  + +VSW +MI
Sbjct: 276 SFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMI 335

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
            G A HG   EA+ LF  M ++ V P  I+FIS+L AC+HAGL+EEG  +F  M   Y I
Sbjct: 336 AGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHI 395

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE 523
           EP IEH+  +VD+ GR G+L+ A D I  MP  P   VW  LLGAC  H N+ELA+   +
Sbjct: 396 EPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQ 455

Query: 524 ALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            L +++P NS   VLL N YA  G+W D   +R  M    IKK T +S V+
Sbjct: 456 RLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVE 506



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 155/315 (49%), Gaps = 30/315 (9%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           ARK+FDEM Q ++V+WN +I+     RG+  +  AR +FD M  R+  +WN +++GY K 
Sbjct: 152 ARKVFDEMHQPNLVAWNAVITACF--RGND-VAGAREIFDKMLVRNHTSWNVMLAGYIKA 208

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALV 129
           GE+E A R+F+ MP R+ VSW+ MI G   NG    +  +F  +       +  SL+ ++
Sbjct: 209 GELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVL 268

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           S   Q+G   E  ++L     +  G   +V   N LI  Y + G V  AR +F+      
Sbjct: 269 SACSQSGSF-EFGKILHGFVEKA-GYSWIVSVNNALIDMYSRCGNVPMARLVFE------ 320

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIH 245
                 ++ KR IVSW SMI   A  G    A  +F +M    +  D  S+ +++    H
Sbjct: 321 -----GMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSH 375

Query: 246 VLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWN 299
              +EE  + F +M       P+   +  MV  Y + G L+ A DF  +MP     + W 
Sbjct: 376 AGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWR 435

Query: 300 SMIAGCETNKDYEGA 314
           +++  C ++ + E A
Sbjct: 436 TLLGACSSHGNIELA 450



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 118/282 (41%), Gaps = 71/282 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDI------ 54
           M++GY+K  E+  A+++F EMP RD VSW+ MI G I+  GS F E   Y  ++      
Sbjct: 201 MLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVG-IAHNGS-FNESFLYFRELQRAGMS 258

Query: 55  ---------------------------MPERDCVTW-----NTVISGYAKTGEMEEALRL 82
                                        E+   +W     N +I  Y++ G +  A  +
Sbjct: 259 PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLV 318

Query: 83  FNSMP-ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALV-----SGL 132
           F  M   R +VSW +MI+G   +G    A+  F+ M       D  S  +L+     +GL
Sbjct: 319 FEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGL 378

Query: 133 IQNGE--LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           I+ GE    E  RV           E  +  Y  ++  YG+ G++++A     ++P+   
Sbjct: 379 IEEGEDYFSEMKRVY--------HIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPI--- 427

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
                       + W +++   +  G++  A ++ +++ E D
Sbjct: 428 --------PPTAIVWRTLLGACSSHGNIELAEQVKQRLNELD 461


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 179/549 (32%), Positives = 299/549 (54%), Gaps = 38/549 (6%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L  A  +F+ + E + + WNT+I G+A + +   +L L+  M +  ++  +      L++
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 105 GDVANAIEFFDRMPGR--------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
              +       ++ G+        D    ++L+S  +QN  L++A +V  +   R     
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHR----- 128

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D+V +Y  LI GY  RG +  A+KLFD+IPV            +++VSWN+MI  YA+ G
Sbjct: 129 DVV-SYTALITGYASRGDIRSAQKLFDEIPV------------KDVVSWNAMISGYAETG 175

Query: 217 DVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWN 268
               A E+FE+M++     D  ++ T++S   H   +E    +   +       +    N
Sbjct: 176 CYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVN 235

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           A++  Y++ G +E A   F+ +  K+++SWN++I G      Y+ A+ LF +M   GE P
Sbjct: 236 ALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 295

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKT---VIPDVPINNALITMYARCGAIVEARI 385
           +  T  S+L   + +  + +G  IH  + K    V     +  +LI MYA+CG I  A  
Sbjct: 296 NDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 355

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F  M L K++ SWNAMI G A HG A  + +LF  MR   + P  ITF+ +LSAC+H+G
Sbjct: 356 VFNSM-LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSG 414

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           +++ GR  F+SM  +Y + P++EH+  ++D++G  G  ++A ++I  M  EPD  +W +L
Sbjct: 415 MLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSL 474

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           L AC++H NVELA+  A+ L+K+EPEN + Y+LL N+YA  GRW+D   +R L+    +K
Sbjct: 475 LKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMK 534

Query: 566 KPTGYSWVD 574
           K  G S ++
Sbjct: 535 KVPGCSSIE 543



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 158/316 (50%), Gaps = 18/316 (5%)

Query: 245 HVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV----SWNS 300
           H   +  A+++F  +  P+ L WN M+ G+A   +   +L  +  M    L+    ++  
Sbjct: 10  HFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPF 69

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           ++  C  +K +    ++  Q+   G   D +  +S++SM      L      +++  ++ 
Sbjct: 70  LLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLE---DAYKVFDRSS 126

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
             DV    ALIT YA  G I  A+ +F+E+  +K+VVSWNAMI G A  G   EALELF+
Sbjct: 127 HRDVVSYTALITGYASRGDIRSAQKLFDEIP-VKDVVSWNAMISGYAETGCYKEALELFE 185

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M    V P   T+++VLSACAH+G +E GRQ   S V+++G +  ++   +L+D+  + 
Sbjct: 186 EMMKMNVRPDESTYVTVLSACAHSGSIELGRQ-VHSWVDDHGFDSNLKIVNALIDLYSKC 244

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV--ELAQVAAEALMKVEPENSTPYVL 538
           G +E A  L +G+ ++ D   W  L+G    H N+  E   +  E L   E  N    + 
Sbjct: 245 GEVETACGLFQGLSYK-DVISWNTLIGG-YTHMNLYKEALLLFQEMLRSGETPNDVTMLS 302

Query: 539 LYNMYA-----DVGRW 549
           +    A     D+GRW
Sbjct: 303 VLPACAHLGAIDIGRW 318



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 211/457 (46%), Gaps = 69/457 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +IS YV+   +  A K+FD    RDVVS+  +I+GY +SRG   +  A+ LFD +P +D 
Sbjct: 105 LISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGY-ASRGD--IRSAQKLFDEIPVKDV 161

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNV----VSWNAMISGFLQNG--DVANAIEFF 114
           V+WN +ISGYA+TG  +EAL LF  M   NV     ++  ++S    +G  ++   +  +
Sbjct: 162 VSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSW 221

Query: 115 DRMPGRDS--ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
               G DS    ++AL+    + GE++ A      CG         V ++NTLI GY   
Sbjct: 222 VDDHGFDSNLKIVNALIDLYSKCGEVETA------CGLFQGLSYKDVISWNTLIGGYTHM 275

Query: 173 GRVEEARKLFDK----------------IPVNCDRGEGNV----------RFK--RNIVS 204
              +EA  LF +                +P     G  ++          R K   N  S
Sbjct: 276 NLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASS 335

Query: 205 W-NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP--- 260
              S+I  YAK GD+ +A ++F  ML +   SWN MI G+      + + +LF +M    
Sbjct: 336 LRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG 395

Query: 261 -HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-----NLVSWNSMIAGCETNKDYEGA 314
             PD +T+  ++S  +  G L+L    F+ M Q       L  +  MI     +  ++ A
Sbjct: 396 IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEA 455

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALIT-M 373
            ++   M++E   PD   + S+L       ++ L     Q + K + P+ P +  L++ +
Sbjct: 456 EEMINTMEME---PDGVIWCSLLKACKMHGNVELAESFAQNLIK-IEPENPSSYILLSNI 511

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAM--IGGCAS 408
           YA  G        +E++  ++ +++   M  + GC+S
Sbjct: 512 YASAGR-------WEDVARIRALLNGKCMKKVPGCSS 541


>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 194/641 (30%), Positives = 323/641 (50%), Gaps = 72/641 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVS---WNVMISGYISSRGSGFLEEARYLFDIMPE 57
           +++ Y      A   + F +    D  S   ++ M+S ++ +   G +  AR LF  MPE
Sbjct: 121 LLTAYAAFTRAADRDQAFRDCVAADAASSFTYDFMVSEHVKA---GDIASARRLFYGMPE 177

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           +  V++ T++    K G + +A+ L+   P  +V  + AMISGF++N    +A   F +M
Sbjct: 178 KSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFPVFRKM 237

Query: 118 PG----RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
                  +  +L  ++   +  GE D A  V V    +C+  E  +  +N+LI  Y + G
Sbjct: 238 LTCSVRPNVVTLICVIKACVGAGEFDLAMGV-VGLAVKCNLFEKSIEVHNSLITLYLRMG 296

Query: 174 RVEEARKLFDKIPVN------------CDRGE--GNVRF-----KRNIVSWNSMIMCYAK 214
               A ++FD + V              D G+  G  R       RN VSW ++I  + +
Sbjct: 297 DAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAMPARNEVSWGTLIARHEQ 356

Query: 215 AGDVVSAREIFEQMLE---RDTFS-WNTMISG-------------YIHVLDMEEASNLFV 257
            GD   A +++ QML    R   S +++++S              + + L M  ++NLFV
Sbjct: 357 KGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFV 416

Query: 258 K----------------------MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
                                  +P  +T+ WN+++SGY+  G +  A   F +MP +N 
Sbjct: 417 SSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNS 476

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           VSWN+MI+G   N+ +  A+  F  M   G  P   T SS+L   + +  L +G  +H  
Sbjct: 477 VSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAE 536

Query: 356 VTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           + K  I D + +  AL  MYA+ G +  +R +F +M   KN ++W AM+ G A +GFA E
Sbjct: 537 IVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPE-KNNITWTAMVQGLAENGFAEE 595

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           ++ LF+ M    + P   TF+++L AC+H GLVE+   +F++M   +GI P+ +H+  +V
Sbjct: 596 SISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETM-QAHGIPPKSKHYTCMV 654

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D++ R G L +A +L+  +  E D + W +LL AC  + N E+ + AA+ L ++E +N+ 
Sbjct: 655 DVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELEKDNTA 714

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
            YVLL NMYA  G+W DA E R+LM+  ++KK  G SW+  
Sbjct: 715 GYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQL 755


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 183/531 (34%), Positives = 263/531 (49%), Gaps = 72/531 (13%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L  AR L    PE D   +NT++ GY+++ E   ++ +F  M  +  V  ++    F   
Sbjct: 55  LPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAF--- 111

Query: 105 GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT 164
             V  A+E F  +         AL  GL                       E  +    T
Sbjct: 112 --VIKAVENFRSLRTGFQMHCQALKHGL-----------------------ESHLFVGTT 146

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           LI  YG  G VE ARK+FD++             + N+V+WN++I    +  DV  AREI
Sbjct: 147 LIGMYGGCGCVEFARKVFDEM------------HQPNLVAWNAVITACFRGNDVAGAREI 194

Query: 225 FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
           F++ML R+  SWN M++GYI   ++E A  +F +MPH D ++W+ M+ G A  G+   + 
Sbjct: 195 FDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESF 254

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
            +F+                               ++Q  G  P+  + + +LS  S   
Sbjct: 255 LYFR-------------------------------ELQRAGMSPNEVSLTGVLSACSQSG 283

Query: 345 DLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
               G  +H  V K      V +NNALI MY+RCG +  AR++FE M+  + +VSW +MI
Sbjct: 284 SFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMI 343

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
            G A HG   EA+ LF  M ++ V P  I+FIS+L AC+HAGL+EEG  +F  M   Y I
Sbjct: 344 AGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHI 403

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE 523
           EP IEH+  +VD+ GR G+L+ A D I  MP  P   VW  LLGAC  H N+ELA+   +
Sbjct: 404 EPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQ 463

Query: 524 ALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            L +++P NS   VLL N YA  G+W D   +R  M    IKK T +S V+
Sbjct: 464 RLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVE 514



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 155/315 (49%), Gaps = 30/315 (9%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           ARK+FDEM Q ++V+WN +I+     RG+  +  AR +FD M  R+  +WN +++GY K 
Sbjct: 160 ARKVFDEMHQPNLVAWNAVITACF--RGND-VAGAREIFDKMLVRNHTSWNVMLAGYIKA 216

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALV 129
           GE+E A R+F+ MP R+ VSW+ MI G   NG    +  +F  +       +  SL+ ++
Sbjct: 217 GELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVL 276

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           S   Q+G   E  ++L     +  G   +V   N LI  Y + G V  AR +F+      
Sbjct: 277 SACSQSGSF-EFGKILHGFVEKA-GYSWIVSVNNALIDMYSRCGNVPMARLVFE------ 328

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIH 245
                 ++ KR IVSW SMI   A  G    A  +F +M    +  D  S+ +++    H
Sbjct: 329 -----GMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSH 383

Query: 246 VLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWN 299
              +EE  + F +M       P+   +  MV  Y + G L+ A DF  +MP     + W 
Sbjct: 384 AGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWR 443

Query: 300 SMIAGCETNKDYEGA 314
           +++  C ++ + E A
Sbjct: 444 TLLGACSSHGNIELA 458



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 118/282 (41%), Gaps = 71/282 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDI------ 54
           M++GY+K  E+  A+++F EMP RD VSW+ MI G I+  GS F E   Y  ++      
Sbjct: 209 MLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVG-IAHNGS-FNESFLYFRELQRAGMS 266

Query: 55  ---------------------------MPERDCVTW-----NTVISGYAKTGEMEEALRL 82
                                        E+   +W     N +I  Y++ G +  A  +
Sbjct: 267 PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLV 326

Query: 83  FNSMP-ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALV-----SGL 132
           F  M   R +VSW +MI+G   +G    A+  F+ M       D  S  +L+     +GL
Sbjct: 327 FEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGL 386

Query: 133 IQNGE--LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           I+ GE    E  RV           E  +  Y  ++  YG+ G++++A     ++P+   
Sbjct: 387 IEEGEDYFSEMKRVY--------HIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPI--- 435

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
                       + W +++   +  G++  A ++ +++ E D
Sbjct: 436 --------PPTAIVWRTLLGACSSHGNIELAEQVKQRLNELD 469


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 177/534 (33%), Positives = 296/534 (55%), Gaps = 40/534 (7%)

Query: 64  NTVISGYAKTGEMEEALRLF-NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-- 120
            ++I+ Y+K G+M EA+ +F +    RNV ++NA+ISGF+ NG  +   +F+ +M     
Sbjct: 50  TSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGV 109

Query: 121 --DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
             D  +   +V    +  E+ +    L+K G   D     V   + L+  Y + G +E+A
Sbjct: 110 MPDKYTFPCVVRTCCEVMEVKKIHGCLLKMGLELD-----VFVGSALVNTYLKNGSMEDA 164

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT 238
           +K+F ++ +            R++V WN+MI  YAK G +  A E+F +M  +       
Sbjct: 165 QKVFGELSI------------RDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRF 212

Query: 239 MISGYIHVL----DMEEASN---LFVKMPHPDTLTW-NAMVSGYAQIGNLELALDFFKRM 290
            I+G + V     D++       + +KM +   ++  NA++  Y +  ++  AL  F+ +
Sbjct: 213 TITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMI 272

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
            +K++ SWNS+I+  E   D++G ++LF +M   G  PD  T +++L   S +  L  G 
Sbjct: 273 NEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGR 332

Query: 351 QIHQMVT---------KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +IH  +             + ++ ++NA++ MYA+CG++  A  IF+ M   K+V SWN 
Sbjct: 333 EIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSK-KDVASWNI 391

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI G   HG+A EAL +F  M   +  P  +T + VLSAC HAG V  GR     M + +
Sbjct: 392 MIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTF 451

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           G+ P IEH+  ++D++GR G LEDA ++++ MP + +  VW ALLGACR+H N ELA++A
Sbjct: 452 GVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIA 511

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           A  ++++EPE+   YVL+ N+Y  +GR+++  EVR  MK  N+KK  G SW++ 
Sbjct: 512 ARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTPGCSWIEL 565



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 130/476 (27%), Positives = 217/476 (45%), Gaps = 80/476 (16%)

Query: 1   MISGYVKRREMAKARKLF-DEMPQRDVVSWNVMISGYIS----SRGSGFLEEARYLFDIM 55
           +I+ Y K  +M +A  +F D   +R+V ++N +ISG++S    S+G  F ++ R L  +M
Sbjct: 52  LINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMR-LEGVM 110

Query: 56  PER------------------------------DCVTWNTVISGYAKTGEMEEALRLFNS 85
           P++                              D    + +++ Y K G ME+A ++F  
Sbjct: 111 PDKYTFPCVVRTCCEVMEVKKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGE 170

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA----SLSALVSGLIQNGELDEA 141
           +  R+VV WNAMI+G+ + G +  A+E F RM  +  A    +++ ++S     G+LD  
Sbjct: 171 LSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNG 230

Query: 142 ARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
             V   ++K G   D G   V   N LI  YG+   + +A  +F+ I             
Sbjct: 231 KTVHGIVMKMGY--DSG---VSVSNALIDMYGKCKHIGDALIIFEMIN------------ 273

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASN 254
           +++I SWNS+I  + + GD      +F++ML      D  +  T++    H+  +     
Sbjct: 274 EKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGRE 333

Query: 255 LFVKM------------PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
           +   M               + L  NA++  YA+ G++  AL  F  M +K++ SWN MI
Sbjct: 334 IHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMI 393

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQM-VTKT 359
            G   +     A+ +F QM     KP+  T   +LS    +G V  H  + + QM  T  
Sbjct: 394 MGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVS-HGRLFLAQMESTFG 452

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
           VIP +     +I M  R G + +A  I ++M +  N V W A++G C  HG A  A
Sbjct: 453 VIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELA 508



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 88/163 (53%), Gaps = 6/163 (3%)

Query: 345 DLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           +L+ G Q+H  M+T    P  P   +LI MY++CG + EA ++F +    +NV ++NA+I
Sbjct: 26  NLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAII 85

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
            G  S+G A++  + +K MR   V+P   TF  V+  C    ++E  + H    + + G+
Sbjct: 86  SGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCE--VMEVKKIH--GCLLKMGL 141

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           E  +   ++LV+   ++G +EDA  +   +    D  +W A++
Sbjct: 142 ELDVFVGSALVNTYLKNGSMEDAQKVFGELSIR-DVVLWNAMI 183


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 188/550 (34%), Positives = 294/550 (53%), Gaps = 39/550 (7%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           ++ AR++ D  P     +WN++I  Y   G  + +L L+  M   +    N      L+ 
Sbjct: 43  IDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKA 102

Query: 105 GDVANAIEFFDRMP--------GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
                ++   +++         G D    ++L+    +   LD A       G R     
Sbjct: 103 CSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFR----- 157

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D V ++N++I GY Q G+VE+AR LF+++P+           +RN+V W +MI  Y K G
Sbjct: 158 DEV-SWNSIISGYVQWGQVEKARDLFEEMPM-----------RRNVVCWTAMINGYGKEG 205

Query: 217 DVVSAREIFEQML------ERDTFSWNTMISGYIHVLDMEEASNLFV-----KMPHPDTL 265
           D V    +F QML      + +  +   ++S    + + E    L V     K+P  +T+
Sbjct: 206 DFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIP-LNTI 264

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
              A++  Y++ G++E A   F  +  KNL SWN++I GC      E AI L+  M+ + 
Sbjct: 265 LVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQS 324

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEAR 384
            KP+  T  ++LS  +G+  L LG ++H  + +  +  +V +  AL+ MYA+CG I +A 
Sbjct: 325 VKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDAC 384

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
           +IF +    K+V  WNAMI G A HG   ++L +F  M    V P  +TFI VLSAC H+
Sbjct: 385 LIFVKTSE-KDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHS 443

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           GLVEEGR  F SM +++G+ P++EH+A +VD++GR G L++A +L++ M   PD  +WGA
Sbjct: 444 GLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGA 503

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           LL ACR+H N+ELA   +E +M  +  N    +LL N+YA  GRW D   VR  +K   I
Sbjct: 504 LLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSGRWKDVARVRRQVKEKRI 563

Query: 565 KKPTGYSWVD 574
           KKP+G SWV+
Sbjct: 564 KKPSGCSWVE 573



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 185/428 (43%), Gaps = 69/428 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP-ERD 59
           +I  Y K   +  AR  +D+M  RD VSWN +ISGY+     G +E+AR LF+ MP  R+
Sbjct: 134 LIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQ---WGQVEKARDLFEEMPMRRN 190

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPAR------NVVSWNAMISGF--LQNGDVANAI 111
            V W  +I+GY K G+  E L LF  M         N  +   ++S    L N +V   +
Sbjct: 191 VVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFL 250

Query: 112 EFF---DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
             F   +++P  ++  ++AL+    + G++++A R+    G  C      + ++N +I G
Sbjct: 251 SVFIDVNKIP-LNTILVTALIDMYSKCGDVEKAWRIFD--GVSCKN----LPSWNAIITG 303

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
             Q G +EEA  L+  +             K N ++  +++   A  G +   RE+   +
Sbjct: 304 CVQGGLLEEAIDLYRHMKAQ--------SVKPNEITLVNVLSACAGLGALELGREVHLYL 355

Query: 229 ----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
               L+ +      ++  Y     +++A  +FVK    D   WNAM+ G A  G      
Sbjct: 356 GRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHG------ 409

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SG 342
                                    D   ++ +F QM   G +P+  TF  +LS    SG
Sbjct: 410 -------------------------DGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSG 444

Query: 343 IVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +V+    +Q   M  K  + P +     ++ +  R G + EA  + + M +  + + W A
Sbjct: 445 LVE-EGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGA 503

Query: 402 MIGGCASH 409
           ++  C  H
Sbjct: 504 LLSACRIH 511



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 126/329 (38%), Gaps = 67/329 (20%)

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
           A  +    +I  Q L         +I   I +  ++ A  +  + P P   +WN+++  Y
Sbjct: 9   ATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHSIDYARFVLDQTPSPTDFSWNSLIRAY 68

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
              G+           PQ +L                     L+++M     KP   TF 
Sbjct: 69  TVHGS-----------PQNSLF--------------------LYLKMLRSSTKPSNFTFP 97

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARC---------------- 377
            +L   S +  +  G QIH  V +     D+ + N+LI MY +C                
Sbjct: 98  FVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFR 157

Query: 378 ---------------GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
                          G + +AR +FEEM + +NVV W AMI G    G   E L LF+ M
Sbjct: 158 DEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQM 217

Query: 423 --RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
              + +V P   T + +LSAC+     E GR      ++   I        +L+D+  + 
Sbjct: 218 LVSADEVQPNAATMVCLLSACSTLCNYEVGR-FLSVFIDVNKIPLNTILVTALIDMYSKC 276

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           G +E A  +  G+  + +   W A++  C
Sbjct: 277 GDVEKAWRIFDGVSCK-NLPSWNAIITGC 304


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 218/712 (30%), Positives = 341/712 (47%), Gaps = 141/712 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----------------------- 37
           +I+ YV    +  A  LF  MP R+VV+WN+MISG+                        
Sbjct: 267 VINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKST 326

Query: 38  -SSRGS-------------GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
            S+ GS             G L  A  L   +   +    ++++S YAK G+ME A ++F
Sbjct: 327 RSTLGSVLSAIASLAALDFGLLVHAEALKQGL-HSNVYVGSSLVSMYAKCGKMEAAKKVF 385

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELD 139
           +++  +NVV WNAM+ G++QNG     +E F  M       D  + S+++S       LD
Sbjct: 386 DTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLD 445

Query: 140 EAARV------------------LVKCGSRCDGGED------LVR-----AYNTLIVGYG 170
              ++                  LV   ++    ED      L+R     ++N +IVGY 
Sbjct: 446 LGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYV 505

Query: 171 QRGRVEEARKLFDKIPV---------------NCDRGEGNVRFKR------------NIV 203
           Q     EA  LF ++ +                C    G  + K+             + 
Sbjct: 506 QEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLY 565

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP--- 260
           S +S+I  YAK G + SA +I   M ER   S N +I+GY  + ++E+A NLF  M    
Sbjct: 566 SGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQI-NLEQAVNLFRDMLVEG 624

Query: 261 -HPDTLTWNAMVSG-------------YAQIGNLELALD--------------------- 285
            +   +T+ +++               ++ I  + L LD                     
Sbjct: 625 INSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDA 684

Query: 286 ---FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
              F +    K+ V W +MI+G   N     A++L+ +M+     PD+ TF S L   + 
Sbjct: 685 SVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAV 744

Query: 343 IVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  +  G + H ++  T    D   ++AL+ MYA+CG +  +  +F+EM   K+V+SWN+
Sbjct: 745 VSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNS 804

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI G A +G+A +AL +F  M+   V P  +TF+ VL+AC+H+G V EGR  F  MVN Y
Sbjct: 805 MIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSGRVSEGRLIFDMMVNLY 864

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           G++PR +H A +VD++GR G L++A + I  + FEPD  VW  +LGACR+H +    Q A
Sbjct: 865 GMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEPDAKVWATMLGACRIHGDDIRGQQA 924

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           AE L+++EP+NS+PYVLL N+YA  G WD+ N +R  M+   +KK  G SW+
Sbjct: 925 AEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLRREMREKGVKKLPGCSWI 976



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 172/533 (32%), Positives = 254/533 (47%), Gaps = 56/533 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           +I  Y K   +  AR +FD   + D VSW  MI GYI     G  EEA  +F  M     
Sbjct: 201 LIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKV---GLPEEAVKVFQEMEKVGQ 257

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D V + TVI+ Y   G ++ A  LF+ MP RNVV+WN MISG  + G    AIEFF  
Sbjct: 258 EPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQN 317

Query: 117 M--PGRDS--ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
           M   G  S  ++L +++S +     LD    +LV   +   G    V   ++L+  Y + 
Sbjct: 318 MRKAGIKSTRSTLGSVLSAIASLAALDFG--LLVHAEALKQGLHSNVYVGSSLVSMYAKC 375

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM---- 228
           G++E A+K+FD +             ++N+V WN+M+  Y + G      E+F  M    
Sbjct: 376 GKMEAAKKVFDTLN------------EQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCG 423

Query: 229 LERDTFSWNTMIS--GYIHVLDMEE-----------ASNLFVKMPHPDTLTWNAMVSGYA 275
              D F++++++S    +  LD+             ASNLFV          NA+V  YA
Sbjct: 424 FYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVG---------NALVDMYA 474

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           + G LE A   F+ +  ++ VSWN +I G    +D   A  LF +M + G  PD  + +S
Sbjct: 475 KSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLAS 534

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           ILS  + +  L  G Q+H +  KT     +   ++LI MYA+CGAI  A  I   M   +
Sbjct: 535 ILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMP-ER 593

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           +VVS NA+I G A      +A+ LF+ M    +  T ITF S+L AC     +  GRQ  
Sbjct: 594 SVVSMNALIAGYAQINL-EQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQ-I 651

Query: 455 KSMVNEYGIEPRIEHFA-SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            S++ + G++   E    SL+ +     R  DA  L           VW A++
Sbjct: 652 HSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMI 704



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 150/564 (26%), Positives = 251/564 (44%), Gaps = 89/564 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR----------------------DVVSWNVMISGYIS 38
           ++   +++ +  K   LFDE+PQR                        V  NV++  Y  
Sbjct: 47  ILQNCLQKSKQVKTHSLFDEIPQRLSQFSTTNKIIHAQSLKLGFWSKGVLGNVIVDLYAK 106

Query: 39  SRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN-------------- 84
                + E A   F  + ++D + WN+++S ++K G     ++ F               
Sbjct: 107 CADVDYAERA---FKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTF 163

Query: 85  ----SMPAR------------NVVSWN---------AMISGFLQNGDVANAIEFFDRMPG 119
               S  AR            NVV            A+I  + +   + +A   FD    
Sbjct: 164 AIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVE 223

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            D  S ++++ G I+ G  +EA +V  +      G E    A+ T+I  Y   GR++ A 
Sbjct: 224 LDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKV--GQEPDQVAFVTVINAYVDLGRLDNAS 281

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            LF ++P             RN+V+WN MI  +AK G  V A E F+ M +    S  + 
Sbjct: 282 DLFSRMP------------NRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRST 329

Query: 240 ISGYIHVLDMEEASN--LFVKMP------HPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           +   +  +    A +  L V         H +    +++VS YA+ G +E A   F  + 
Sbjct: 330 LGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLN 389

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           ++N+V WN+M+ G   N      ++LF  M+  G  PD  T+SSILS  + +  L LG Q
Sbjct: 390 EQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQ 449

Query: 352 IHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +H ++ K     ++ + NAL+ MYA+ GA+ +AR  FE ++   N VSWN +I G     
Sbjct: 450 LHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDN-VSWNVIIVGYVQEE 508

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
              EA  LF+ M    +LP  ++  S+LSACA    +E+G+Q    +  + G E ++   
Sbjct: 509 DEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQ-VHCLSVKTGQETKLYSG 567

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMP 494
           +SL+D+  + G ++ A  ++  MP
Sbjct: 568 SSLIDMYAKCGAIDSAHKILACMP 591



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 139/302 (46%), Gaps = 11/302 (3%)

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           N +V  YA+  +++ A   FK++  K++++WNS+++           +K F  +   G  
Sbjct: 98  NVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVW 157

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARII 386
           P+  TF+ +LS  + +  +  G Q+H  V K     +     ALI MYA+C  + +AR I
Sbjct: 158 PNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSI 217

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+    L  V SW +MIGG    G   EA+++F+ M      P  + F++V++A    G 
Sbjct: 218 FDGAVELDKV-SWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGR 276

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWG 503
           ++     F  M N   +   +     ++    + G   +A++  + M     +  ++  G
Sbjct: 277 LDNASDLFSRMPNRNVVAWNL-----MISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLG 331

Query: 504 ALLGACRVHNNVELAQ-VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
           ++L A      ++    V AEAL +    N      L +MYA  G+ + A +V   +   
Sbjct: 332 SVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQ 391

Query: 563 NI 564
           N+
Sbjct: 392 NV 393



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 103/203 (50%), Gaps = 10/203 (4%)

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           + N ++ +YA+C  +  A   F++++  K++++WN+++   +  GF    ++ F  + + 
Sbjct: 96  LGNVIVDLYAKCADVDYAERAFKQLED-KDILAWNSILSMHSKQGFPHLVVKYFGLLWNS 154

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            V P   TF  VLS+CA   +V+ GRQ   ++V + G E       +L+ +  +   L D
Sbjct: 155 GVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVV-KMGFESISYCEGALIGMYAKCNFLTD 213

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP----YVLLYN 541
           A  +  G   E DK  W +++G    +  V L + A +   ++E     P    +V + N
Sbjct: 214 ARSIFDG-AVELDKVSWTSMIGG---YIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVIN 269

Query: 542 MYADVGRWDDANEVRLLMKSNNI 564
            Y D+GR D+A+++   M + N+
Sbjct: 270 AYVDLGRLDNASDLFSRMPNRNV 292


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 189/622 (30%), Positives = 319/622 (51%), Gaps = 62/622 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGFLEE 47
           ++  Y+K   + +  ++F+ MP+++VV+W  +++G             +   R  G    
Sbjct: 141 LVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPN 200

Query: 48  ARYLFDIMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                 ++                               N++++ YAK G +E+A  +FN
Sbjct: 201 PFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFN 260

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDR---MPGRDSASLSALVSGLIQNGELDEA 141
            M  R++VSWN +++G   N     A++ F       G+ + S  A V  L  N +    
Sbjct: 261 WMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLAL 320

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
           AR L  C  +  G          L   Y + G + +A  +F     +           RN
Sbjct: 321 ARQLHSCVLK-HGFHLTGNVMTALADAYSKCGELADALNIFSMTTGS-----------RN 368

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFV 257
           +VSW ++I    + GD+  A  +F +M E     + F+++ M+   + +L  +  + +  
Sbjct: 369 VVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIK 428

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                      A+++ Y++ G+ E AL  FK + QK++V+W++M++      D EGA  L
Sbjct: 429 TNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYL 488

Query: 318 FIQMQVEGEKPDRHTFSSIL---SMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITM 373
           F +M ++G KP+  T SS++   +  S  VD   G Q H +  K    D + +++AL++M
Sbjct: 489 FNKMAIQGIKPNEFTISSVIDACACPSAGVDQ--GRQFHAISIKYRYHDAICVSSALVSM 546

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           Y+R G I  A+I+FE  +  +++VSWN+MI G A HG++ +A+E F+ M +  +    +T
Sbjct: 547 YSRKGNIDSAQIVFER-QTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVT 605

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           F++V+  C H GLV EG+Q+F SMV ++ I P +EH+A +VD+  R G+L++ M LI+ M
Sbjct: 606 FLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDM 665

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           PF     VW  LLGACRVH NVEL + +A+ L+ +EP +S+ YVLL N+YA  G+W + +
Sbjct: 666 PFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERD 725

Query: 554 EVRLLMKSNNIKKPTGYSWVDF 575
           EVR LM    +KK  G SW+  
Sbjct: 726 EVRKLMDYRKVKKEAGCSWIQI 747



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 213/442 (48%), Gaps = 43/442 (9%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR--- 120
            +++  Y K G + E + +F  MP +NVV+W ++++G       +  +  F RM      
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW 198

Query: 121 -DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            +  + ++++S +   G LD   RV    VK G R       V   N+L+  Y + G VE
Sbjct: 199 PNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSS-----VFVCNSLMNMYAKCGLVE 253

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ----MLERD 232
           +A+ +F+ +              R++VSWN+++         + A ++F +    M +  
Sbjct: 254 DAKSVFNWMET------------RDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMT 301

Query: 233 TFSWNTMISGYIHVLDMEEASNLF-VKMPHPDTLTWNAMVS---GYAQIGNLELALDFFK 288
             ++ T+I    ++  +  A  L    + H   LT N M +    Y++ G L  AL+ F 
Sbjct: 302 QSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFS 361

Query: 289 RMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
                +N+VSW ++I+GC  N D   A+ LF +M+ +   P+  T+S++L  S  I    
Sbjct: 362 MTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI---- 417

Query: 348 LGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           L  QIH  V KT    +P +  AL+  Y++ G+  +A  IF+ ++  K+VV+W+AM+   
Sbjct: 418 LPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIE-QKDVVAWSAMLSCH 476

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACA--HAGLVEEGRQHFKSMVNEYGIE 464
           A  G    A  LF  M    + P   T  SV+ ACA   AG V++GRQ F ++  +Y   
Sbjct: 477 AQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAG-VDQGRQ-FHAISIKYRYH 534

Query: 465 PRIEHFASLVDIVGRHGRLEDA 486
             I   ++LV +  R G ++ A
Sbjct: 535 DAICVSSALVSMYSRKGNIDSA 556



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 163/369 (44%), Gaps = 70/369 (18%)

Query: 187 VNC--DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI 244
           V C  DRGE        + +  S++  Y K G V    E+FE M +++  +W ++++G  
Sbjct: 126 VKCGHDRGE--------VSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCA 177

Query: 245 HVLDMEEASNLFVKM------PHPDTLT-------------------------------- 266
           H     E   LF +M      P+P T                                  
Sbjct: 178 HAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVF 237

Query: 267 -WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
             N++++ YA+ G +E A   F  M  +++VSWN+++AG + N+    A++LF + +   
Sbjct: 238 VCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATM 297

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEAR 384
            K  + T+++++ + + +  L L  Q+H  V K        +  AL   Y++CG + +A 
Sbjct: 298 GKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADAL 357

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF-------ISV 437
            IF      +NVVSW A+I GC  +G    A+ LF  MR  +V+P   T+       +S+
Sbjct: 358 NIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI 417

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           L    HA +++   QH  S+              +L+    + G  EDA+ + K M  + 
Sbjct: 418 LPPQIHAQVIKTNYQHIPSVGT------------ALLASYSKFGSTEDALSIFK-MIEQK 464

Query: 498 DKAVWGALL 506
           D   W A+L
Sbjct: 465 DVVAWSAML 473



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 140/274 (51%), Gaps = 5/274 (1%)

Query: 250 EEASNLFVKMPHP--DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
           E+   L VK  H   +     ++V  Y + G++   ++ F+ MP+KN+V+W S++ GC  
Sbjct: 119 EQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAH 178

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPI 366
            + +   + LF +M+ EG  P+  TF+S+LS  +    L LG ++H Q V       V +
Sbjct: 179 AQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFV 238

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            N+L+ MYA+CG + +A+ +F  M+  +++VSWN ++ G   +    EAL+LF   R+  
Sbjct: 239 CNSLMNMYAKCGLVEDAKSVFNWME-TRDMVSWNTLMAGLQLNECELEALQLFHESRATM 297

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
              T  T+ +V+  CA+   +   RQ   S V ++G         +L D   + G L DA
Sbjct: 298 GKMTQSTYATVIKLCANLKQLALARQ-LHSCVLKHGFHLTGNVMTALADAYSKCGELADA 356

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           +++        +   W A++  C  + ++ LA V
Sbjct: 357 LNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVV 390



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 112/265 (42%), Gaps = 19/265 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++S Y ++  +  A+ +F+    RD+VSWN MISGY      G+  +A   F  M     
Sbjct: 543 LVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQ---HGYSMKAIETFRQMEASGI 599

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
           + D VT+  VI G    G + E  + F+SM   + ++     +  M+  + + G +   +
Sbjct: 600 QMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETM 659

Query: 112 EFFDRMPGRDSASLSALVSGLI---QNGELDE-AARVLVKCGSRCDGGEDLVRAYNTLIV 167
                MP    A +   + G     +N EL + +A  L+           L+   + +  
Sbjct: 660 SLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLL---SNIYA 716

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
             G+    +E RKL D   V  + G   ++ K  + S+ +    +  +  +    ++   
Sbjct: 717 AAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIIT 776

Query: 228 MLERDTFSWNTMISGYIHVLDMEEA 252
            L++D +S NT    +    D +EA
Sbjct: 777 RLKQDGYSPNTSFVLHDIAEDQKEA 801


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 194/627 (30%), Positives = 320/627 (51%), Gaps = 74/627 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y+K  +    R +FDEM  ++VVSW  ++SGY  +   G  +E  +L + M     
Sbjct: 145 LVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARN---GLNDEVIHLINQMQMEGV 201

Query: 57  -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                                              E      N +I  Y K+  + +A  
Sbjct: 202 NPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEA 261

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP-GRDSASLSALVSGL---IQNGE 137
           +F+SM  R+ V+WN MI G+   G      + F RM       S +   + L    Q  E
Sbjct: 262 VFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRE 321

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           L+   ++   CG   +G E        L+V Y +   V+EA KLF               
Sbjct: 322 LNFTKQL--HCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADA---------- 369

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG----YIHVLDM 249
              N+V+W +MI  + +  +   A ++F QM    +  + F+++T+++G     +  L  
Sbjct: 370 -AHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHA 428

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           +     + K+P   T    A++  Y + GN+  +   F  +P K++V+W++M+ G    +
Sbjct: 429 QIIKAYYEKVPSVAT----ALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTR 484

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSIL-SMSSGIVDLHLGMQIHQMVTKTVIPD-VPIN 367
           D E A+++FIQ+  EG KP+ +TFSS++ + SS    +  G QIH    K+   + + ++
Sbjct: 485 DSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVS 544

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           +AL+TMY++ G I  A  +F   +  +++VSWN+MI G   HG A +ALE+F+ M++  +
Sbjct: 545 SALLTMYSKKGNIESAEKVFTRQEE-RDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGL 603

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
               +TFI VL+AC HAGLVEEG ++F  M+ +Y I+ + EH++ +VD+  R G  + AM
Sbjct: 604 PLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAM 663

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
           D+I GMPF     +W  LL ACRVH N+EL ++AAE L+ ++P ++  YVLL N++A  G
Sbjct: 664 DIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAG 723

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVD 574
            W++   VR LM    +KK  G SW++
Sbjct: 724 NWEEKAHVRKLMDERKVKKEAGCSWIE 750



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 137/556 (24%), Positives = 239/556 (42%), Gaps = 72/556 (12%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGY---------------ISSRGSGF--------LEEARY 50
           A +LFDE P +D+  +N ++  +               + S G G         L+    
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 51  LFDIMPER-------------DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM 97
           LFD +  R             D     +++  Y KT + E+   +F+ M  +NVVSW ++
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 98  ISGFLQNGDVANAIEFFDRMP--GRDSASLS-ALVSGLIQNGELDEAARVLVKCGSRCDG 154
           +SG+ +NG     I   ++M   G +    + A V G + +  + E   V V      +G
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGG-VQVHAMIVKNG 235

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
            E      N LI  Y +   V +A  +FD + V            R+ V+WN MI  YA 
Sbjct: 236 FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVV------------RDSVTWNIMIGGYAA 283

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT-------- 266
            G  +   ++F +M         T+    + +   +   N F K  H   +         
Sbjct: 284 IGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELN-FTKQLHCGVVKNGYEFAQD 342

Query: 267 -WNAMVSGYAQIGNLELALDFFKRM-PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
              A++  Y++  +++ A   F       N+V+W +MI G   N + + A+ LF QM  E
Sbjct: 343 IRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSRE 402

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEA 383
           G +P+  T+S++L+         L  Q+H  + K     VP +  AL+  Y + G +VE+
Sbjct: 403 GVRPNHFTYSTVLAGKPS----SLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVES 458

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC-A 442
             +F  +   K++V+W+AM+ G A    + +A+E+F  +    V P   TF SV++AC +
Sbjct: 459 ARVFYSIP-AKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSS 517

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
            A  VE G+Q   + V   G    +   ++L+ +  + G +E A  +      E D   W
Sbjct: 518 SAATVEHGKQIHATAVKS-GKSNALCVSSALLTMYSKKGNIESAEKVFTRQE-ERDIVSW 575

Query: 503 GALLGACRVHNNVELA 518
            +++     H + + A
Sbjct: 576 NSMITGYGQHGDAKKA 591



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 19/218 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +++ Y K+  +  A K+F    +RD+VSWN MI+GY      G  ++A  +F IM  +  
Sbjct: 547 LLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGY---GQHGDAKKALEVFQIMQNQGL 603

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPA-----RNVVSWNAMISGFLQNGDVANAI 111
             D VT+  V++     G +EE  + FN M       +    ++ M+  + + G    A+
Sbjct: 604 PLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAM 663

Query: 112 EFFDRMPGRDSASL-SALVSG--LIQNGELDE-AARVLVKCGSRCDGGEDLVRAYNTLIV 167
           +  + MP   S ++   L++   + +N EL + AA  LV        G  L+   + +  
Sbjct: 664 DIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAG 723

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
            + ++  V   RKL D+  V  + G   +  K  I S+
Sbjct: 724 NWEEKAHV---RKLMDERKVKKEAGCSWIEIKNRIFSF 758


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 183/508 (36%), Positives = 283/508 (55%), Gaps = 37/508 (7%)

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGL--IQNGE 137
           NS P  N+VSW+A+I GF QNG    A+E   RM       ++ +L++++     +QN  
Sbjct: 6   NSKP--NLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLN 63

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           L +     V   +R  G        N L+  Y +   +  A K+F    V          
Sbjct: 64  LGKEIHGYV---TR-HGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSV---------- 109

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--LERDTFSWNTMISGYIHVL----DMEE 251
             +N+VS+N+MI+ Y + G+V  A+E+F+QM  + +DT SWN+MISGY   L    D++ 
Sbjct: 110 --KNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKA 167

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP----QKNLVSWNSMIAGCET 307
           A   F  +   DT TWN ++SGYA    LE   +  ++M     + N+ +WN +I+G   
Sbjct: 168 AQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVE 227

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPI 366
           N   E A++LF +MQ    +PD +T   IL   + +  +  G Q+H   + +    DV I
Sbjct: 228 NGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHI 287

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
             AL+ MYA+CG+I  A  ++  +    N+VS NAM+   A HG   E + LF++M    
Sbjct: 288 GAALVDMYAKCGSIKHAMQVYNRISN-PNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNG 346

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
             P ++TF+SVLS+C HAG VE G + F  M   Y + P ++H+  +VD++ R GRL++A
Sbjct: 347 FRPDHVTFLSVLSSCVHAGAVETGHEFFDLMT-YYNVTPSLKHYTCIVDLLSRAGRLDEA 405

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
            +L+K +P +PD  +WGALLG C +  NVEL ++AAE+L+++EP N+  YVLL N+YA  
Sbjct: 406 YELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYA 465

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           GRW D +  R ++K   + K  G SW++
Sbjct: 466 GRWHDLDRTRQMIKDRGMHKSPGCSWIE 493



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 193/448 (43%), Gaps = 85/448 (18%)

Query: 20  EMPQRDVVSWNVMISGYISS-------------RGSGFLEEARYLFDIMPE--------- 57
           E  + ++VSW+ +I G+  +             + +GF   AR L  ++P          
Sbjct: 5   ENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNL 64

Query: 58  --------------RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQ 103
                          +    N ++  Y +  +M  AL++F+    +NVVS+N MI G+ +
Sbjct: 65  GKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCE 124

Query: 104 NGDVANAIEFFDRMP--GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
           NG+V  A E FD+M   G+D+ S ++++SG   N         L+KC       EDL  A
Sbjct: 125 NGNVEKAKELFDQMELVGKDTISWNSMISGYADN---------LLKC-------EDLKAA 168

Query: 162 --------------YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
                         +N LI GY    ++E  + L  K+     +G+G   F+ N+ +WN 
Sbjct: 169 QLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKM-----KGDG---FEPNVYTWNG 220

Query: 208 MIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP- 262
           +I  + + G    A  +F +M    L  D ++   ++     +  +     +        
Sbjct: 221 IISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQG 280

Query: 263 ---DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
              D     A+V  YA+ G+++ A+  + R+   NLVS N+M+     +   +  I LF 
Sbjct: 281 YELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFR 340

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT-KTVIPDVPINNALITMYARCG 378
            M   G +PD  TF S+LS       +  G +   ++T   V P +     ++ + +R G
Sbjct: 341 NMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAG 400

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGC 406
            + EA  + +++    + V W A++GGC
Sbjct: 401 RLDEAYELVKKIPRKPDSVMWGALLGGC 428



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 149/328 (45%), Gaps = 40/328 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMP--QRDVVSWNVMISGYISSR-GSGFLEEARYLFDIMPE 57
           MI GY +   + KA++LFD+M    +D +SWN MISGY  +      L+ A+  FD + E
Sbjct: 118 MIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTE 177

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMISGFLQNGDVANAIEF 113
           RD  TWN +ISGYA   ++E    L   M       NV +WN +ISG ++NG    A+  
Sbjct: 178 RDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRL 237

Query: 114 FDRMPGRDSASLSALVSGLIQNGELDEAARVL-------VKCGSRCDGGEDLVRAYNTLI 166
           F  M    S        G+I    L   AR+        V   S   G E  V     L+
Sbjct: 238 FTEMQ-TSSLRPDIYTVGII----LPACARLATIARGKQVHAHSIRQGYELDVHIGAALV 292

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
             Y + G ++ A +++++I               N+VS N+M+  YA  G       +F 
Sbjct: 293 DMYAKCGSIKHAMQVYNRIS------------NPNLVSQNAMLTAYAMHGHGDEGIALFR 340

Query: 227 QML----ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIG 278
            ML      D  ++ +++S  +H   +E     F  M +    P    +  +V   ++ G
Sbjct: 341 NMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAG 400

Query: 279 NLELALDFFKRMPQK-NLVSWNSMIAGC 305
            L+ A +  K++P+K + V W +++ GC
Sbjct: 401 RLDEAYELVKKIPRKPDSVMWGALLGGC 428


>gi|218197545|gb|EEC79972.1| hypothetical protein OsI_21597 [Oryza sativa Indica Group]
          Length = 731

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 185/613 (30%), Positives = 312/613 (50%), Gaps = 62/613 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +ISG V    +  ARK FD MP R+VVSW  MI G+ +      ++ A  LF +MP ++ 
Sbjct: 141 LISGLVMNHRVGDARKAFDRMPVRNVVSWTAMIKGHFTVHE---VDMAFQLFKLMPVKNS 197

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMP--------------------------------- 87
           V+W  +I G+    +  EA+ LFNS+                                  
Sbjct: 198 VSWCVMIGGFVTHEKFSEAVELFNSLMMNGEEVTNVILVKIVNAFAGMKSIRGGRCIHGL 257

Query: 88  ------ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                 A ++V   +++  + ++ D+  A   FD+M G    S +A++ G I + ++DEA
Sbjct: 258 AVKSGFAYDLVLEASLVLMYCKSLDITEARLEFDKMEGNHVGSWNAMLCGYIYSDKIDEA 317

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            ++     +R     D + ++N++I GY   GR+ +A +L+ K+       E ++     
Sbjct: 318 RKLFDSMNNR-----DKI-SWNSMINGYINDGRIADATELYSKMT------EKSLEAATA 365

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           ++SW      +   G +  AR++F  M + D  S  T++ GY+    M++A +LF  M  
Sbjct: 366 LMSW------FIDNGMLDKARDMFYNMPQIDVMSCTTLLFGYVKGGHMDDALDLFHMMQK 419

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
              +T+N M+SG    G +  A   F   P ++ V+W+ ++AG  TN     A++ + +M
Sbjct: 420 RTVVTYNVMISGLFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEALQFYKKM 479

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAI 380
            +   +P     SS++S  S    +  G Q H    K  +   + I N+LI++Y +CG +
Sbjct: 480 LLSNIRPSESVVSSLISCLSNYSMMVHGQQFHATTIKIGLDSHLLIQNSLISLYCKCGEM 539

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
           + A+ IF+ M   ++ V+WN +I G A +     A+E+F+SM   +V P  ITF+ VLSA
Sbjct: 540 IIAQSIFDLMA-KRDKVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDPDDITFLGVLSA 598

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C H  L+EE +  F +M   YGI P I H+A +VD+  R   +++A  L+K MPFEPD A
Sbjct: 599 CNHMSLLEEAKYFFNAMTCTYGILPNIMHYACMVDLFCRKCMIKEAEGLVKSMPFEPDSA 658

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
           +W +LL  CR+  N +LA+ AA  L+ ++P    PY+ L +++    +    + +R  +K
Sbjct: 659 IWTSLLSGCRLTGNDKLAEHAASQLIAIDPCTKMPYLHLISVHGLTNKSTVIDSLRSQIK 718

Query: 561 SNNIKKPTGYSWV 573
           S   +K  GYSW+
Sbjct: 719 STATEKDVGYSWI 731



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 174/376 (46%), Gaps = 61/376 (16%)

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
           +V   N L+  + + GR+E AR++FD +P            +R++VSWN+++   A+AG 
Sbjct: 34  VVSGNNRLMAEHLRAGRLEAAREVFDGMP------------RRDVVSWNTIMAVQARAGS 81

Query: 218 VVSAREIFEQML------ERDTFS--------------------------------WNTM 239
              A   F +M       +  +FS                                WN +
Sbjct: 82  HGRAVGAFLEMRRQGFRPDHTSFSTALSACARLEALEMGSCLEQVLDGVESPNVALWNAL 141

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           ISG +    + +A   F +MP  + ++W AM+ G+  +  +++A   FK MP KN VSW 
Sbjct: 142 ISGLVMNHRVGDARKAFDRMPVRNVVSWTAMIKGHFTVHEVDMAFQLFKLMPVKNSVSWC 201

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
            MI G  T++ +  A++LF  + + GE+        I++  +G+  +  G  IH +  K+
Sbjct: 202 VMIGGFVTHEKFSEAVELFNSLMMNGEEVTNVILVKIVNAFAGMKSIRGGRCIHGLAVKS 261

Query: 360 VIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
               D+ +  +L+ MY +   I EAR+ F++M+   +V SWNAM+ G        EA +L
Sbjct: 262 GFAYDLVLEASLVLMYCKSLDITEARLEFDKME-GNHVGSWNAMLCGYIYSDKIDEARKL 320

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F SM +       I++ S+++   + G + +  + +  M      E  +E   +L+    
Sbjct: 321 FDSMNN----RDKISWNSMINGYINDGRIADATELYSKMT-----EKSLEAATALMSWFI 371

Query: 479 RHGRLEDAMDLIKGMP 494
            +G L+ A D+   MP
Sbjct: 372 DNGMLDKARDMFYNMP 387



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 119/493 (24%), Positives = 211/493 (42%), Gaps = 86/493 (17%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR--- 120
           N +++ + + G +E A  +F+ MP R+VVSWN +++   + G    A+  F  M  +   
Sbjct: 39  NRLMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFR 98

Query: 121 -DSASLSALVSGLIQNGELDEAA---RVLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRV 175
            D  S S  +S   +   L+  +   +VL       DG E   V  +N LI G     RV
Sbjct: 99  PDHTSFSTALSACARLEALEMGSCLEQVL-------DGVESPNVALWNALISGLVMNHRV 151

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
            +ARK FD++PV            RN+VSW +MI  +    +V  A ++F+ M  +++ S
Sbjct: 152 GDARKAFDRMPV------------RNVVSWTAMIKGHFTVHEVDMAFQLFKLMPVKNSVS 199

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN-------------------------AM 270
           W  MI G++      EA  LF  +        N                         A+
Sbjct: 200 WCVMIGGFVTHEKFSEAVELFNSLMMNGEEVTNVILVKIVNAFAGMKSIRGGRCIHGLAV 259

Query: 271 VSGYAQIGNLELALDF--------------FKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
            SG+A    LE +L                F +M   ++ SWN+M+ G   +   + A K
Sbjct: 260 KSGFAYDLVLEASLVLMYCKSLDITEARLEFDKMEGNHVGSWNAMLCGYIYSDKIDEARK 319

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYAR 376
           LF  M       D+ +++S++   +G ++        ++ +K     +    AL++ +  
Sbjct: 320 LFDSMN----NRDKISWNSMI---NGYINDGRIADATELYSKMTEKSLEAATALMSWFID 372

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
            G + +AR +F  M  + +V+S   ++ G    G   +AL+LF  M+      T +T+  
Sbjct: 373 NGMLDKARDMFYNMPQI-DVMSCTTLLFGYVKGGHMDDALDLFHMMQK----RTVVTYNV 427

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           ++S   H G + E  + F    NE      +  ++ LV  +  +G + +A+   K M   
Sbjct: 428 MISGLFHQGKITEAYKLF----NESPTRDSVT-WSCLVAGLATNGLIHEALQFYKKMLLS 482

Query: 497 ---PDKAVWGALL 506
              P ++V  +L+
Sbjct: 483 NIRPSESVVSSLI 495


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 186/612 (30%), Positives = 321/612 (52%), Gaps = 66/612 (10%)

Query: 14   ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP----------------- 56
            A K+FDEMP+RD ++WN ++   + +  SG  E+A  LF +M                  
Sbjct: 579  ANKIFDEMPKRDDLAWNEIV---MVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQV 635

Query: 57   ----------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
                                  E +    N++I  Y++ G++E + ++FNSM  RN+ SW
Sbjct: 636  CSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSW 695

Query: 95   NAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEAARVLVKCGS 150
            N+++S + + G V +A+   D M       D  + ++L+SG        +A  VL +   
Sbjct: 696  NSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRI-- 753

Query: 151  RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
            +  G +    + ++L+    + G V+  + +   +  N        +   ++    ++I 
Sbjct: 754  QIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRN--------QLWYDVYVETTLID 805

Query: 211  CYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT 266
             Y K G +  AR +F+ M E++  +WN++ISG  +   ++EA  L  +M       + +T
Sbjct: 806  MYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVT 865

Query: 267  WNAMVSGYAQIGNLELALDFFKRMPQK----NLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
            WN++VSGYA  G  E AL    +M +     N+VSW ++++GC  N ++   +K+F++MQ
Sbjct: 866  WNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQ 925

Query: 323  VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIV 381
             EG  P+  T SS+L +   +  L+ G ++H    K  +  D  +  AL+ MYA+ G + 
Sbjct: 926  EEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLKNNLTRDAHVATALVDMYAKSGDLQ 985

Query: 382  EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
             A  IF  +K  K + SWN MI G A      E + +F +M    + P  ITF SVLS C
Sbjct: 986  SAAEIFWGIKN-KPLASWNCMIMGYAMFRRGEEGIAVFNAMLEAGIEPDAITFTSVLSVC 1044

Query: 442  AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
             ++GLV EG ++F  M + YG+ P IEH + +V+++GR G L++A D I+ MP +PD  +
Sbjct: 1045 KNSGLVREGWKYFDLMRSHYGVIPTIEHCSCMVELLGRSGYLDEAWDFIRTMPLKPDATI 1104

Query: 502  WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
            WGA L +C++H ++ELA++A + L  +EP NS  Y+++ N+Y+++ RW D   +R  M +
Sbjct: 1105 WGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWGDVERIRNSMSN 1164

Query: 562  NNIKKPTGYSWV 573
            N ++    +SW+
Sbjct: 1165 NRVRVQDLWSWI 1176



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 206/488 (42%), Gaps = 102/488 (20%)

Query: 70   YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
            Y +   ++ A ++F+ MP R+ ++WN ++   LQ+G+   A++ F  M    + +  + +
Sbjct: 570  YGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTM 629

Query: 130  SGLIQ---NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
              L+Q   N E     R +     R  G E  V   N+LIV Y + G++E +RK+F    
Sbjct: 630  VKLLQVCSNKEGFAQGRQIHGYVLRL-GFESNVSMCNSLIVMYSRNGKLESSRKVF---- 684

Query: 187  VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG 242
                    N    RN+ SWNS++  Y + G V  A  + ++M    L+ D  +WN+++SG
Sbjct: 685  --------NSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSG 736

Query: 243  Y---------IHVL----------DMEEASNLFVKMPHP--------------------D 263
            Y         I VL          +    S+L   +  P                    D
Sbjct: 737  YASKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYD 796

Query: 264  TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
                  ++  Y + G L  A   F  M +KN+V+WNS+I+G       + A  L  +M+ 
Sbjct: 797  VYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEK 856

Query: 324  EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEA 383
            EG K +  T+                                  N+L++ YA  G   +A
Sbjct: 857  EGIKSNAVTW----------------------------------NSLVSGYATWGKTEKA 882

Query: 384  RIIFEEMK---LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
              +  +MK   +  NVVSW A++ GC+ +G     L++F  M+   V P   T  S+L  
Sbjct: 883  LAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRI 942

Query: 441  CAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFAS-LVDIVGRHGRLEDAMDLIKGMPFEPD 498
                 L+  G++ H   + N      R  H A+ LVD+  + G L+ A ++  G+  +P 
Sbjct: 943  LGCLSLLYSGKEVHSFCLKNNL---TRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKP- 998

Query: 499  KAVWGALL 506
             A W  ++
Sbjct: 999  LASWNCMI 1006



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 160/353 (45%), Gaps = 55/353 (15%)

Query: 1    MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
            +I  Y+K   +  AR +FD M ++++V+WN +ISG      +G L+EA  L   M +   
Sbjct: 803  LIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGL---SYTGLLKEAEALISRMEKEGI 859

Query: 59   --DCVTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMISGFLQNGDVANAIE 112
              + VTWN+++SGYA  G+ E+AL +   M       NVVSW A++SG  +NG+  N ++
Sbjct: 860  KSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLK 919

Query: 113  FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL------------VR 160
             F +M     +  SA +S L++          ++ C S    G+++              
Sbjct: 920  IFLKMQEEGVSPNSATISSLLR----------ILGCLSLLYSGKEVHSFCLKNNLTRDAH 969

Query: 161  AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
                L+  Y + G ++ A ++F  I              + + SWN MIM YA       
Sbjct: 970  VATALVDMYAKSGDLQSAAEIFWGIK------------NKPLASWNCMIMGYAMFRRGEE 1017

Query: 221  AREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMV 271
               +F  MLE     D  ++ +++S   +   + E    F  M       P     + MV
Sbjct: 1018 GIAVFNAMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCSCMV 1077

Query: 272  SGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
                + G L+ A DF + MP K +   W + ++ C+ ++D E A   + ++QV
Sbjct: 1078 ELLGRSGYLDEAWDFIRTMPLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQV 1130



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 3/224 (1%)

Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
           + + DT   +A++  Y +  +L+LA   F  MP+++ ++WN ++     + ++E A+KLF
Sbjct: 555 LDNSDTRVVSALMGFYGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLF 614

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARC 377
             M+  G K    T   +L + S       G QIH  V +     +V + N+LI MY+R 
Sbjct: 615 RVMRFSGAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRN 674

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G +  +R +F  M + +N+ SWN+++      G+  +A+ L   M +  + P  +T+ S+
Sbjct: 675 GKLESSRKVFNSM-VDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSL 733

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           LS  A   L  +     K  +   G++P     +SL+  V   G
Sbjct: 734 LSGYASKALSRDAIAVLKR-IQIAGLKPNTSSISSLLQAVYEPG 776


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 206/716 (28%), Positives = 342/716 (47%), Gaps = 149/716 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           M++ Y    +++ A  LFD MP  DVVSWN ++SGY      G  +E+  LF       +
Sbjct: 131 MLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQR---GMFQESVDLFVEMARRGV 187

Query: 55  MPER---------------------------------DCVTWNTVISGYAKTGEMEEALR 81
            P+R                                 D  T + ++  Y K   +++AL 
Sbjct: 188 SPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALC 247

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM---------PG-----RDSASLSA 127
            F  MP RN VSW A I+G +QN      +E F  M         P      R  A++S 
Sbjct: 248 FFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSC 307

Query: 128 LVSG------LIQNGELDE--AARVLVKCGSRCDGGEDLVRAY-----------NTLIVG 168
           L +G       I+N    +      +V   ++ +   D  RA+           N ++VG
Sbjct: 308 LNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 367

Query: 169 YGQRGRVEEARKLF----------DKIPVN-----CDRGEGNVR------------FKRN 201
             + G   EA  LF          D + ++     C   +G  +            F  +
Sbjct: 368 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 427

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH-------VLDMEEASN 254
           I   N+++  Y K   ++ A  IF+ M ++D+ SWN +I+           +L   E   
Sbjct: 428 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 487

Query: 255 LFVKMPHPDTLTWNAMVSGYAQIGNLELAL-------------DFF-------------- 287
             +K   PD  T+ +++   A + +LE  L             D F              
Sbjct: 488 FGMK---PDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGI 544

Query: 288 --------KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
                    R+  + +VSWN++++G   NK+ E A K F +M   G KPD  TF+++L  
Sbjct: 545 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 604

Query: 340 SSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            + +  + LG QIH Q++ + ++ D  I++ L+ MYA+CG + ++ ++FE+++  ++ VS
Sbjct: 605 CANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEK-RDFVS 663

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WNAMI G A HG   EAL +F+ M+   V+P + TF++VL AC+H GL ++G ++F  M 
Sbjct: 664 WNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMT 723

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
             Y +EP++EHFA +VDI+GR    ++A+  I  MPF+ D  +W  LL  C++  +VE+A
Sbjct: 724 THYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIA 783

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           ++AA  ++ ++P++S+ Y+LL N+YA+ G+W D +  R L+K   +KK  G SW++
Sbjct: 784 ELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIE 839



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 140/512 (27%), Positives = 232/512 (45%), Gaps = 58/512 (11%)

Query: 51  LFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANA 110
           +FD MP RD V+WNT+++ Y+  G++  A+ LF+ MP  +VVSWNA++SG+ Q G    +
Sbjct: 116 VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 175

Query: 111 IEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYN 163
           ++ F  M  R    D  + + L+       EL    +V    VK G   D     VR  +
Sbjct: 176 VDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEID-----VRTGS 230

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
            L+  YG+   +++A   F  +P            +RN VSW + I    +    V   E
Sbjct: 231 ALVDMYGKCRSLDDALCFFYGMP------------ERNWVSWGAAIAGCVQNEQYVRGLE 278

Query: 224 IFEQMLE--------------RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA 269
           +F +M                R   + + + +G    L      N F      D +   A
Sbjct: 279 LFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTG--RQLHAHAIKNKF----SSDRVVGTA 332

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +V  YA+  +L  A   F  +P   + + N+M+ G         A+ LF  M     + D
Sbjct: 333 IVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFD 392

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFE 388
             + S + S  +       G Q+H +  K+    D+ +NNA++ +Y +C A++EA +IF+
Sbjct: 393 VVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQ 452

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
            MK  K+ VSWNA+I     +G   + +  F  M  F + P   T+ SVL ACA    +E
Sbjct: 453 GMK-QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLE 511

Query: 449 EGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM---DLIKGMPFEPDKAVWGA 504
            G   H K + +  G +  +   +++VD+  + G +++A    D I G         W A
Sbjct: 512 YGLMVHDKVIKSGLGSDAFVA--STVVDMYCKCGIIDEAQKLHDRIGGQQV----VSWNA 565

Query: 505 LLGACRVHNNVELAQ-VAAEAL-MKVEPENST 534
           +L    ++   E AQ   +E L M ++P++ T
Sbjct: 566 ILSGFSLNKESEEAQKFFSEMLDMGLKPDHFT 597



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 141/291 (48%), Gaps = 36/291 (12%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N ++  YA+      AR +F+ M  RDT SWNTM++ Y H  D+  A  LF  MP PD +
Sbjct: 98  NCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVV 157

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           +WNA+VSGY Q G  + ++D                               LF++M   G
Sbjct: 158 SWNALVSGYCQRGMFQESVD-------------------------------LFVEMARRG 186

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEAR 384
             PDR TF+ +L   S + +L LG+Q+H +  KT +  DV   +AL+ MY +C ++ +A 
Sbjct: 187 VSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDAL 246

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
             F  M   +N VSW A I GC  +      LELF  M+   +  +  ++ S   +CA  
Sbjct: 247 CFFYGMP-ERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAM 305

Query: 445 GLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
             +  GRQ H  ++ N++  +  +    ++VD+  +   L DA     G+P
Sbjct: 306 SCLNTGRQLHAHAIKNKFSSDRVVG--TAIVDVYAKANSLTDARRAFFGLP 354



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 183/387 (47%), Gaps = 57/387 (14%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N L+  Y +      AR++FD +P            +R+ VSWN+M+  Y+ AGD+ +A 
Sbjct: 98  NCLLQMYARCAGAACARRVFDAMP------------RRDTVSWNTMLTAYSHAGDISTAV 145

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW----------- 267
            +F+ M + D  SWN ++SGY      +E+ +LFV+M      PD  T+           
Sbjct: 146 ALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALE 205

Query: 268 ------------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                                   +A+V  Y +  +L+ AL FF  MP++N VSW + IA
Sbjct: 206 ELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIA 265

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-P 362
           GC  N+ Y   ++LFI+MQ  G    + +++S     + +  L+ G Q+H    K     
Sbjct: 266 GCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSS 325

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           D  +  A++ +YA+  ++ +AR  F  +     V + NAM+ G    G   EA+ LF+ M
Sbjct: 326 DRVVGTAIVDVYAKANSLTDARRAFFGLP-NHTVETSNAMMVGLVRAGLGIEAMGLFQFM 384

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
               +    ++   V SACA      +G+Q H  ++ + + ++  + +  +++D+ G+  
Sbjct: 385 IRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNN--AVLDLYGKCK 442

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGA 508
            L +A  + +GM  + D   W A++ A
Sbjct: 443 ALMEAYLIFQGMK-QKDSVSWNAIIAA 468


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 196/622 (31%), Positives = 321/622 (51%), Gaps = 66/622 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS----GFLEEAR------- 49
           +I  Y K R+M +A K F  MP R+VVSW  +ISG++    S     F +E R       
Sbjct: 289 IIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKIN 348

Query: 50  -------------------------YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
                                    ++F      D    + +I+ Y+K G ++ + R+F 
Sbjct: 349 NYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFR 408

Query: 85  SMPA-RNVVSWNAMISGFLQNGDVANAIEFFDRMPG---RDSASLSALVSGLIQNGELDE 140
            M + +N+  W  MIS F Q+G    A+E F RM     R     S+ V  +I +  L  
Sbjct: 409 EMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGR 468

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
               L+ C     G    +   ++L   Y + G +EE+  +F+++P             +
Sbjct: 469 ----LIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMP------------DK 512

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQML------ERDTFSWNTMISGYIHVLDMEEASN 254
           + VSW SMI  +++      A ++F +ML      ++ T +        +H L+  +  +
Sbjct: 513 DNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVH 572

Query: 255 LFVKMPH--PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
            +        + L   A+V+ Y++ G + LA   F  +PQK+  S +S+++G   N   E
Sbjct: 573 GYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIE 632

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALI 371
            A+ LF ++++     D  T SS++   + +  L +G Q+H  VTK  +  +V + ++L+
Sbjct: 633 DALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLV 692

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
           TMY++CG+I E   +FE+++   +++SW AMI   A HG   EAL+++  MR     P  
Sbjct: 693 TMYSKCGSIDECHKVFEQIEK-PDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDS 751

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           +TF+ VLSAC+H G+VEEG  H  SM  EYGIEP   H+A +VD++GR GRL++A   I 
Sbjct: 752 VTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFIN 811

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
            MP EPD  +WG LL AC+VH ++EL ++AA+ ++++EP  +  YV L N+ AD+G W+D
Sbjct: 812 NMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTLSNICADMGWWED 871

Query: 552 ANEVRLLMKSNNIKKPTGYSWV 573
             ++R LM+   +KK  G+S V
Sbjct: 872 VMKIRSLMEGTGVKKEPGWSSV 893



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 172/659 (26%), Positives = 308/659 (46%), Gaps = 119/659 (18%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGFLEEARYL 51
           Y K   M  A +LFD+ P  +V+SWN++ISG             +   R SGF       
Sbjct: 91  YCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNFCKMRFSGFDPNQFTY 150

Query: 52  FDIMPERDCVTWNTVISG-------------------------YAKTGEMEEALRLFNSM 86
             ++    C    + + G                         +AK    E+ALR+F  +
Sbjct: 151 GSVLSA--CTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDV 208

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAA 142
              NVV WNA+ISG ++N +   A++ F +M  R    +S + S++++      EL+   
Sbjct: 209 LCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGR 268

Query: 143 RV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
            V   ++KCG+    GED V     +I  Y +   +++A K F ++P+            
Sbjct: 269 GVQGWVIKCGA----GED-VFVGTAIIDLYAKCRDMDQAVKEFLRMPI------------ 311

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNL 255
           RN+VSW ++I  + +  D +SA   F++M +     + ++  ++++     + ++EA  L
Sbjct: 312 RNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQL 371

Query: 256 ----FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRM-PQKNLVSWNSMIAGCETNKD 310
               F    + D+   +A+++ Y++IG ++L+   F+ M   KNL  W  MI+    +  
Sbjct: 372 HSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGS 431

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNA 369
              A++LF +M  EG +PD+   SS+LS+   I  L LG  IH  + K  +  D+ + ++
Sbjct: 432 TGRAVELFQRMLQEGLRPDKFCSSSVLSI---IDSLSLGRLIHCYILKIGLFTDISVGSS 488

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           L TMY++CG++ E+  +FE+M   K+ VSW +MI G + H  A +A++LF+ M   ++ P
Sbjct: 489 LFTMYSKCGSLEESYTVFEQMP-DKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRP 547

Query: 430 TYITFISVLSACAHAGLVEEGRQHF---------------KSMVNEYG------------ 462
             +T  + L+AC+    +E+G++                  ++VN Y             
Sbjct: 548 DQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVF 607

Query: 463 -IEPRIEHF--ASLVDIVGRHGRLEDAMDL---IKGMPFEPDKAVWGALLGACRVHNNVE 516
            + P+ + F  +SLV    ++G +EDA+ L   I+      D     +++GA  + N+++
Sbjct: 608 DMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLD 667

Query: 517 LAQV--AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +     A    M +  E S    L+  MY+  G  D+ ++V        I+KP   SW 
Sbjct: 668 IGTQLHACVTKMGLNAEVSVGSSLV-TMYSKCGSIDECHKVF-----EQIEKPDLISWT 720



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 141/527 (26%), Positives = 260/527 (49%), Gaps = 43/527 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARY-------LFD 53
           +ISG VK RE   A  LF +M  R  +  +   S  +++  +  LEE  +       +  
Sbjct: 219 IISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAA--LEELEFGRGVQGWVIK 276

Query: 54  IMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEF 113
                D      +I  YAK  +M++A++ F  MP RNVVSW  +ISGF+Q  D  +A  F
Sbjct: 277 CGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHF 336

Query: 114 FDRM----PGRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLI 166
           F  M       ++ +++++++   +   + EA ++   + K G   D         + LI
Sbjct: 337 FKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDS-----NVSSALI 391

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
             Y + G V+ + ++F ++              +N+  W  MI  +A++G    A E+F+
Sbjct: 392 NMYSKIGVVDLSERVFREMEST-----------KNLAMWAVMISAFAQSGSTGRAVELFQ 440

Query: 227 QMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMP--HPDTLTWNAMVSGYAQIGNL 280
           +ML+     D F  ++++S  I  L +    + ++       D    +++ + Y++ G+L
Sbjct: 441 RMLQEGLRPDKFCSSSVLS-IIDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSL 499

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           E +   F++MP K+ VSW SMI G   +   E A++LF +M +E  +PD+ T ++ L+  
Sbjct: 500 EESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTAC 559

Query: 341 SGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           S +  L  G ++H    +  V  +V +  AL+ MY++CGAIV AR +F +M   K+  S 
Sbjct: 560 SALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVF-DMLPQKDQFSC 618

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           ++++ G A +G+  +AL LF  +R   +     T  SV+ A A    ++ G Q   + V 
Sbjct: 619 SSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQ-LHACVT 677

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           + G+   +   +SLV +  + G +++   + + +  +PD   W A++
Sbjct: 678 KMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIE-KPDLISWTAMI 723



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 123/517 (23%), Positives = 224/517 (43%), Gaps = 64/517 (12%)

Query: 67  ISGYAKTG-------EMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
            S Y K+G       ++  A  L  ++   N    N+++  + ++  + +A+  FD+ P 
Sbjct: 50  FSDYTKSGRCTLRNTKILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPH 109

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            +  S + L+SG  QN   +++ R    C  R  G +     Y +++      G      
Sbjct: 110 PNVISWNILISGCNQNFSFEDSWRNF--CKMRFSGFDPNQFTYGSVLSACTALGSPLYGE 167

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            ++     N     G VR          MI  +AK      A  +F+ +L  +   WN +
Sbjct: 168 LVYSLALKNGFFSNGYVR--------AGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAI 219

Query: 240 ISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSG---------------------- 273
           ISG +   +   A +LF +M      P++ T++++++                       
Sbjct: 220 ISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGA 279

Query: 274 -------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                        YA+  +++ A+  F RMP +N+VSW ++I+G     D   A   F +
Sbjct: 280 GEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKE 339

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGA 379
           M+  GEK + +T +S+L+  +  V +   +Q+H  + KT    D  +++ALI MY++ G 
Sbjct: 340 MRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGV 399

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           +  +  +F EM+  KN+  W  MI   A  G    A+ELF+ M    + P      SVLS
Sbjct: 400 VDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLS 459

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
                 L   GR      + + G+   I   +SL  +  + G LE++  + + MP + D 
Sbjct: 460 IIDSLSL---GRL-IHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMP-DKDN 514

Query: 500 AVWGALLGACRVHNNVELA-QVAAEALM-KVEPENST 534
             W +++     H++ E A Q+  E L+ ++ P+  T
Sbjct: 515 VSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMT 551


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/517 (32%), Positives = 281/517 (54%), Gaps = 50/517 (9%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +I+ Y+K G+   A ++F+ M  RN+ SWN M+SG+ + G +  A + FD+MP +D  
Sbjct: 90  NHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVV 149

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ---RGRVEEARK 180
           S + +V    ++G  ++A R                R    L +GY +    G +    K
Sbjct: 150 SWNTMVIAYAKSGFCNDALR--------------FYRELRRLGIGYNEYSFAGLLNICVK 195

Query: 181 LFDKIPVNCDRGEGNVR-FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           + +        G+  V  F  N+V  +S++  YAK  ++  AR +F++M+ RD  +W TM
Sbjct: 196 VKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTM 255

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           +SGY    D+E A  LF  MP  + + W ++++GYA+      AL+ F +M   N+    
Sbjct: 256 VSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNI---- 311

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
                                      +PD+ TFSS L  S+ I  L+ G QIH  + +T
Sbjct: 312 ---------------------------RPDQFTFSSCLCASASIASLNHGKQIHGYLIRT 344

Query: 360 VI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
            I P+  + ++LI MY++CG +   R++F+ M    +VV WN +I   A HG   EA+++
Sbjct: 345 NIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQM 404

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  M    + P  IT I +L+AC+H+GLV+EG + ++S+ + +G+ P  EH+A L+D++G
Sbjct: 405 FDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLG 464

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           R G  +  M+ ++ MP +P+  +W ALLG CR+H N+E  +  AE +++++P++S  YVL
Sbjct: 465 RAGHFDTLMNQLEKMPCKPNDEIWNALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYVL 524

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           L +++A VGRW+    VR LM   +++K    SW++ 
Sbjct: 525 LSSIHAAVGRWELVENVRQLMNERHVRKDRAISWIEI 561



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 134/474 (28%), Positives = 219/474 (46%), Gaps = 44/474 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+ Y K  +   A K+FDEM  R++ SWN M+SGY      G ++ AR LFD MPE+D 
Sbjct: 92  LINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAK---LGKIKPARKLFDKMPEKDV 148

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WNT++  YAK+G   +ALR +  +    +       +G L        +E   +  G+
Sbjct: 149 VSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQ 208

Query: 121 DSASLSALVSGLIQNGELDEAA-RVLVKCGSRCDG----GEDLVR---AYNTLIVGYGQR 172
                  LV+G + N  +  +      KC    D      E ++R   A+ T++ GY Q 
Sbjct: 209 ------VLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQW 262

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML--- 229
           G VE AR+LFD +P            ++N V+W S+I  YA+      A E+F +M+   
Sbjct: 263 GDVEAARELFDLMP------------EKNPVAWTSLIAGYARHDLGHKALELFTKMMALN 310

Query: 230 -ERDTFSWNTMISGYIHVLDMEEASN----LFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
              D F++++ +     +  +         L      P+T+  ++++  Y++ G LE+  
Sbjct: 311 IRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGR 370

Query: 285 DFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
             F  M  K ++V WN++I+    +   + AI++F  M   G KPDR T   +L+  S  
Sbjct: 371 LVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHS 430

Query: 344 VDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
             +  G+++++ +T    VIP+      LI +  R G         E+M    N   WNA
Sbjct: 431 GLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNA 490

Query: 402 MIGGCASHG---FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
           ++G C  HG   F  E  E    +   +    Y+   S+ +A     LVE  RQ
Sbjct: 491 LLGVCRMHGNIEFGREVAEKIIELDP-QSSAAYVLLSSIHAAVGRWELVENVRQ 543



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 164/341 (48%), Gaps = 34/341 (9%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           +TF  N +I+ Y    D   A  +F +M   +  +WN M+SGYA++G ++ A   F +MP
Sbjct: 85  NTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMP 144

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           +K++VSWN+M+     +     A++ + +++  G   + ++F+ +L++   + +L L  Q
Sbjct: 145 EKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQ 204

Query: 352 IH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLL----------------- 393
            H Q++    + ++ I+++++  YA+C  + +AR +F+EM +                  
Sbjct: 205 AHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGD 264

Query: 394 -------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
                        KN V+W ++I G A H    +ALELF  M +  + P   TF S L A
Sbjct: 265 VEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCA 324

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
            A    +  G+Q    ++    I P     +SL+D+  + G LE    +   M  + D  
Sbjct: 325 SASIASLNHGKQIHGYLIRT-NIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVV 383

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKV--EPENSTPYVLL 539
           +W  ++ +   H   + A    + ++++  +P+  T  VLL
Sbjct: 384 LWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLL 424



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 112/281 (39%), Gaps = 45/281 (16%)

Query: 332 TFSSILSMSSGIVDLHLG--MQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEE 389
           T + +L   +    L LG  + +H  VT    P+  + N LI MY++CG    A  +F+E
Sbjct: 52  TLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDE 111

Query: 390 M-------------------------KLL-----KNVVSWNAMIGGCASHGFATEALELF 419
           M                         KL      K+VVSWN M+   A  GF  +AL  +
Sbjct: 112 MSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFY 171

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVG 478
           + +R   +     +F  +L+ C     +E  +Q H + +V   G    +   +S++D   
Sbjct: 172 RELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVA--GFLSNLVISSSVLDAYA 229

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE-NSTPYV 537
           +   + DA  L   M    D   W  ++       +VE    AA  L  + PE N   + 
Sbjct: 230 KCSEMGDARRLFDEMIIR-DVLAWTTMVSGYAQWGDVE----AARELFDLMPEKNPVAWT 284

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFSPC 578
            L   YA       A E+   M + NI +P  ++   FS C
Sbjct: 285 SLIAGYARHDLGHKALELFTKMMALNI-RPDQFT---FSSC 321


>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Glycine max]
          Length = 912

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 211/649 (32%), Positives = 321/649 (49%), Gaps = 124/649 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I+ Y KR  +  A+ LFD  P  + +S N+M+ GY     +G L+ AR LFDIMP++ C
Sbjct: 310 LINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAK---AGQLDNARKLFDIMPDKGC 366

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL----QNGDVANAIEFFDR 116
           V++ T+I G  +     EAL +F  M +  VV  +  +   +      G++ N      R
Sbjct: 367 VSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILNC-----R 421

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           M    + ++   V GL           VLV          +L+RAY  L  G G      
Sbjct: 422 MI--HAIAIKLFVEGL-----------VLVS--------TNLMRAY-CLCSGVG------ 453

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           EAR+LFD++P            + N+VSWN M+  YAKAG V  ARE+FE++ ++D  SW
Sbjct: 454 EARRLFDRMP------------EVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISW 501

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHP-----DTLTWN----------------------- 268
            TMI GYI +  + EA  ++  M        + L  N                       
Sbjct: 502 GTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVK 561

Query: 269 -----------AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG---- 313
                       ++  YA  G ++LA   F+   + +L SWN++++G   N+  +     
Sbjct: 562 KGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKI 621

Query: 314 ---------------------------AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
                                      A++LF +M   G KP+  T  S+ S  + +  L
Sbjct: 622 FDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSAIATLGTL 681

Query: 347 HLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS-WNAMIG 404
             G   H+ +    IP +  +  ALI MYA+CG+I  A   F +++     VS WNA+I 
Sbjct: 682 KEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSALQFFNQIRDKTFSVSPWNAIIC 741

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           G ASHG A+  L++F  M+ + + P  ITFI VLSAC HAGLVE GR+ F+ M + Y +E
Sbjct: 742 GLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCHAGLVEPGRRIFRIMKSAYNVE 801

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           P I+H+  +VD++GR G LE+A ++I+ MP + D  +WG LL ACR H +V + + AAE+
Sbjct: 802 PDIKHYGCMVDLLGRAGLLEEAEEMIRSMPMKADIVIWGTLLAACRTHGDVNIGERAAES 861

Query: 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           L  + P +    VLL N+YAD GRW+D + VR  +++  +++  G S V
Sbjct: 862 LAGLAPSHGGGKVLLSNIYADAGRWEDVSLVRRAIQNQRMERMPGCSGV 910



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 2/193 (1%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
           L  +TF  N++I+ Y     +++A  LF   P  + ++ N MV GYA+ G L+ A   F 
Sbjct: 300 LHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAKAGQLDNARKLFD 359

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            MP K  VS+ +MI G   N+ +  A+++F  M+ +G  P+  T  +++   S   ++  
Sbjct: 360 IMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILN 419

Query: 349 GMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
              IH +  K  +   V ++  L+  Y  C  + EAR +F+ M  + N+VSWN M+ G A
Sbjct: 420 CRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEV-NLVSWNVMLNGYA 478

Query: 408 SHGFATEALELFK 420
             G    A ELF+
Sbjct: 479 KAGLVDMARELFE 491


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 205/713 (28%), Positives = 342/713 (47%), Gaps = 143/713 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           M++ Y    +++ A  LFD MP  DVVSWN ++SGY      G  +E+  LF       +
Sbjct: 89  MLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQR---GMFQESVDLFVEMARRGV 145

Query: 55  MPER---------------------------------DCVTWNTVISGYAKTGEMEEALR 81
            P+R                                 D  T + ++  Y K   +++AL 
Sbjct: 146 SPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALC 205

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM---------PG-----RDSASLSA 127
            F  MP RN VSW A I+G +QN      +E F  M         P      R  A++S 
Sbjct: 206 FFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSC 265

Query: 128 LVSG------LIQNGELDE--AARVLVKCGSRCDGGEDLVRAY-----------NTLIVG 168
           L +G       I+N    +      +V   ++ +   D  RA+           N ++VG
Sbjct: 266 LNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 325

Query: 169 YGQRGRVEEARKLF----------DKIPVN-----CDRGEGNVR------------FKRN 201
             + G   EA  LF          D + ++     C   +G  +            F  +
Sbjct: 326 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 385

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           I   N+++  Y K   ++ A  IF+ M ++D+ SWN +I+        ++    F +M  
Sbjct: 386 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 445

Query: 262 ----PDTLTWNAMVSGYAQIGNLELAL-------------DFF----------------- 287
               PD  T+ +++   A + +LE  L             D F                 
Sbjct: 446 FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDE 505

Query: 288 -----KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
                 R+  + +VSWN++++G   NK+ E A K F +M   G KPD  TF+++L   + 
Sbjct: 506 AQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCAN 565

Query: 343 IVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  + LG QIH Q++ + ++ D  I++ L+ MYA+CG + ++ ++FE+++  ++ VSWNA
Sbjct: 566 LATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEK-RDFVSWNA 624

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI G A HG   EAL +F+ M+   V+P + TF++VL AC+H GL ++G ++F  M   Y
Sbjct: 625 MICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHY 684

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
            +EP++EHFA +VDI+GR    ++A+  I  MPF+ D  +W  LL  C++  +VE+A++A
Sbjct: 685 KLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELA 744

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A  ++ ++P++S+ Y+LL N+YA+ G+W D +  R L+K   +KK  G SW++
Sbjct: 745 ASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIE 797



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 140/512 (27%), Positives = 232/512 (45%), Gaps = 58/512 (11%)

Query: 51  LFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANA 110
           +FD MP RD V+WNT+++ Y+  G++  A+ LF+ MP  +VVSWNA++SG+ Q G    +
Sbjct: 74  VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 133

Query: 111 IEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYN 163
           ++ F  M  R    D  + + L+       EL    +V    VK G   D     VR  +
Sbjct: 134 VDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEID-----VRTGS 188

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
            L+  YG+   +++A   F  +P            +RN VSW + I    +    V   E
Sbjct: 189 ALVDMYGKCRSLDDALCFFYGMP------------ERNWVSWGAAIAGCVQNEQYVRGLE 236

Query: 224 IFEQMLE--------------RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA 269
           +F +M                R   + + + +G    L      N F      D +   A
Sbjct: 237 LFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTG--RQLHAHAIKNKF----SSDRVVGTA 290

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +V  YA+  +L  A   F  +P   + + N+M+ G         A+ LF  M     + D
Sbjct: 291 IVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFD 350

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFE 388
             + S + S  +       G Q+H +  K+    D+ +NNA++ +Y +C A++EA +IF+
Sbjct: 351 VVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQ 410

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
            MK  K+ VSWNA+I     +G   + +  F  M  F + P   T+ SVL ACA    +E
Sbjct: 411 GMK-QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLE 469

Query: 449 EGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM---DLIKGMPFEPDKAVWGA 504
            G   H K + +  G +  +   +++VD+  + G +++A    D I G         W A
Sbjct: 470 YGLMVHDKVIKSGLGSDAFVA--STVVDMYCKCGIIDEAQKLHDRIGGQQV----VSWNA 523

Query: 505 LLGACRVHNNVELAQ-VAAEAL-MKVEPENST 534
           +L    ++   E AQ   +E L M ++P++ T
Sbjct: 524 ILSGFSLNKESEEAQKFFSEMLDMGLKPDHFT 555



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 143/299 (47%), Gaps = 36/299 (12%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  N    N ++  YA+      AR +F+ M  RDT SWNTM++ Y H  D+  A  LF 
Sbjct: 48  FVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFD 107

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
            MP PD ++WNA+VSGY Q G  + ++D                               L
Sbjct: 108 GMPDPDVVSWNALVSGYCQRGMFQESVD-------------------------------L 136

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYAR 376
           F++M   G  PDR TF+ +L   S + +L LG+Q+H +  KT +  DV   +AL+ MY +
Sbjct: 137 FVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGK 196

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           C ++ +A   F  M   +N VSW A I GC  +      LELF  M+   +  +  ++ S
Sbjct: 197 CRSLDDALCFFYGMP-ERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYAS 255

Query: 437 VLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
              +CA    +  GRQ H  ++ N++  +  +    ++VD+  +   L DA     G+P
Sbjct: 256 AFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG--TAIVDVYAKANSLTDARRAFFGLP 312



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 183/387 (47%), Gaps = 57/387 (14%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N L+  Y +      AR++FD +P            +R+ VSWN+M+  Y+ AGD+ +A 
Sbjct: 56  NCLLQMYARCAGAACARRVFDAMP------------RRDTVSWNTMLTAYSHAGDISTAV 103

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW----------- 267
            +F+ M + D  SWN ++SGY      +E+ +LFV+M      PD  T+           
Sbjct: 104 ALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALE 163

Query: 268 ------------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                                   +A+V  Y +  +L+ AL FF  MP++N VSW + IA
Sbjct: 164 ELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIA 223

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-P 362
           GC  N+ Y   ++LFI+MQ  G    + +++S     + +  L+ G Q+H    K     
Sbjct: 224 GCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSS 283

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           D  +  A++ +YA+  ++ +AR  F  +     V + NAM+ G    G   EA+ LF+ M
Sbjct: 284 DRVVGTAIVDVYAKANSLTDARRAFFGLP-NHTVETSNAMMVGLVRAGLGIEAMGLFQFM 342

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
               +    ++   V SACA      +G+Q H  ++ + + ++  + +  +++D+ G+  
Sbjct: 343 IRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNN--AVLDLYGKCK 400

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGA 508
            L +A  + +GM  + D   W A++ A
Sbjct: 401 ALMEAYLIFQGMK-QKDSVSWNAIIAA 426


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 183/488 (37%), Positives = 277/488 (56%), Gaps = 30/488 (6%)

Query: 101 FLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR 160
           +L+   + +A + FDRMP RD    SA+++G  + G ++EA  +  +   R  G E  + 
Sbjct: 149 YLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGE--MRSGGVEPNLV 206

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA----G 216
           ++N ++ G+G  G  +EA  +F  + V     +G            S + C   A     
Sbjct: 207 SWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDG------------STVSCVLPAVGCLE 254

Query: 217 DVVSAREI----FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           DVV   ++     +Q L  D F  + M+  Y     ++E S +F ++   +  + NA ++
Sbjct: 255 DVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLT 314

Query: 273 GYAQIGNLELALDFFKRMPQK----NLVSWNSMIAGCETN-KDYEGAIKLFIQMQVEGEK 327
           G ++ G ++ AL+ F +   +    N+V+W S+IA C  N KD E A++LF  MQ  G +
Sbjct: 315 GLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLE-ALELFRDMQAYGVE 373

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARII 386
           P+  T  S++     I  L  G +IH   + + +  DV + +ALI MYA+CG I  AR  
Sbjct: 374 PNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRC 433

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F++M  L N+VSWNA++ G A HG A E +E+F  M      P  +TF  VLSACA  GL
Sbjct: 434 FDKMSAL-NLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGL 492

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            EEG + + SM  E+GIEP++EH+A LV ++ R G+LE+A  +IK MPFEPD  VWGALL
Sbjct: 493 TEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALL 552

Query: 507 GACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
            +CRVHNN+ L ++AAE L  +EP N   Y+LL N+YA  G WD+ N +R +MKS  ++K
Sbjct: 553 SSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRK 612

Query: 567 PTGYSWVD 574
             GYSW++
Sbjct: 613 NPGYSWIE 620



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 207/428 (48%), Gaps = 41/428 (9%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP----ERDC 60
           Y+K   +  ARKLFD MP RDVV W+ MI+GY  SR  G +EEA+ LF  M     E + 
Sbjct: 149 YLKCDRILDARKLFDRMPDRDVVVWSAMIAGY--SR-LGLVEEAKELFGEMRSGGVEPNL 205

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM------PARNVVSWNAMISGFLQNGDVANAIEFF 114
           V+WN +++G+   G  +EA+ +F  M      P  + VS      G L++  V   +  +
Sbjct: 206 VSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGY 265

Query: 115 --DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQ 171
              +  G D   +SA++    + G + E +RV        D  E++ + + N  + G  +
Sbjct: 266 VIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVF-------DEVEEMEIGSLNAFLTGLSR 318

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--- 228
            G V+ A ++F+K          + + + N+V+W S+I   ++ G  + A E+F  M   
Sbjct: 319 NGMVDTALEVFNKFK--------DQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAY 370

Query: 229 -LERDTFSWNTMI--SGYIHVLDMEEASNLFV--KMPHPDTLTWNAMVSGYAQIGNLELA 283
            +E +  +  ++I   G I  L   +  + F   +    D    +A++  YA+ G ++LA
Sbjct: 371 GVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLA 430

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F +M   NLVSWN+++ G   +   +  +++F  M   G+KPD  TF+ +LS  +  
Sbjct: 431 RRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQN 490

Query: 344 VDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
                G + +  +++   + P +     L+T+ +R G + EA  I +EM    +   W A
Sbjct: 491 GLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGA 550

Query: 402 MIGGCASH 409
           ++  C  H
Sbjct: 551 LLSSCRVH 558



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 148/306 (48%), Gaps = 43/306 (14%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  + +  +S+   Y K   ++ AR++F++M +RD   W+ MI+GY  +  +EEA  LF 
Sbjct: 135 FLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFG 194

Query: 258 KMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
           +M      P+ ++WN M++G+   GN                            N  Y+ 
Sbjct: 195 EMRSGGVEPNLVSWNGMLAGF---GN----------------------------NGFYDE 223

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALIT 372
           A+ +F  M V+G  PD  T S +L     + D+ +G Q+H  V K  +  D  + +A++ 
Sbjct: 224 AVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLD 283

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY +CG + E   +F+E++ ++ + S NA + G + +G    ALE+F   +  K+    +
Sbjct: 284 MYGKCGCVKEMSRVFDEVEEME-IGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVV 342

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR-----HGRLEDAM 487
           T+ S++++C+  G   E  + F+ M   YG+EP      SL+   G      HG+     
Sbjct: 343 TWTSIIASCSQNGKDLEALELFRDM-QAYGVEPNAVTIPSLIPACGNISALMHGKEIHCF 401

Query: 488 DLIKGM 493
            L +G+
Sbjct: 402 SLRRGI 407



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 175/439 (39%), Gaps = 112/439 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMP----QRDVVSWNVMISGYISSRGSGFLEEARYLFDIM- 55
           MI+GY +   + +A++LF EM     + ++VSWN M++G+     +GF +EA  +F +M 
Sbjct: 176 MIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGF---GNNGFYDEAVGMFRMML 232

Query: 56  ---------------PERDCV-----------------------TWNTVISGYAKTGEME 77
                          P   C+                         + ++  Y K G ++
Sbjct: 233 VQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVK 292

Query: 78  EALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLI 133
           E  R+F+ +    + S NA ++G  +NG V  A+E F++   +    +  + +++++   
Sbjct: 293 EMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCS 352

Query: 134 QNGELDEAARVL---------------------------------VKCGSRCDGGEDLVR 160
           QNG+  EA  +                                  + C S   G  D V 
Sbjct: 353 QNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVY 412

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
             + LI  Y + GR++ AR+ FDK+               N+VSWN+++  YA  G    
Sbjct: 413 VGSALIDMYAKCGRIQLARRCFDKMSA------------LNLVSWNAVMKGYAMHGKAKE 460

Query: 221 AREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMV 271
             E+F  ML+     D  ++  ++S        EE    +  M       P    +  +V
Sbjct: 461 TMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLV 520

Query: 272 SGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE----GAIKLFIQMQVEGE 326
           +  +++G LE A    K MP + +   W ++++ C  + +       A KLF    +E  
Sbjct: 521 TLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFF---LEPT 577

Query: 327 KPDRHTFSSILSMSSGIVD 345
            P  +   S +  S G+ D
Sbjct: 578 NPGNYILLSNIYASKGLWD 596



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 5/200 (2%)

Query: 263 DTLTWNAMVSGYAQIGNL---ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
           DT    +++S YA   +L   +L+L     +P   L S++S+I     +  +   +  F 
Sbjct: 34  DTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFS 93

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCG 378
            +      PD     S +   + +  L  G Q+H     +  + D  + ++L  MY +C 
Sbjct: 94  HLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCD 153

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
            I++AR +F+ M   ++VV W+AMI G +  G   EA ELF  MRS  V P  +++  +L
Sbjct: 154 RILDARKLFDRMP-DRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGML 212

Query: 439 SACAHAGLVEEGRQHFKSMV 458
           +   + G  +E    F+ M+
Sbjct: 213 AGFGNNGFYDEAVGMFRMML 232


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 205/713 (28%), Positives = 342/713 (47%), Gaps = 143/713 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           M++ Y    +++ A  LFD MP  DVVSWN ++SGY      G  +E+  LF       +
Sbjct: 89  MLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQR---GMFQESVDLFVEMARRGV 145

Query: 55  MPER---------------------------------DCVTWNTVISGYAKTGEMEEALR 81
            P+R                                 D  T + ++  Y K   +++AL 
Sbjct: 146 SPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALC 205

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM---------PG-----RDSASLSA 127
            F  MP RN VSW A I+G +QN      +E F  M         P      R  A++S 
Sbjct: 206 FFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSC 265

Query: 128 LVSG------LIQNGELDE--AARVLVKCGSRCDGGEDLVRAY-----------NTLIVG 168
           L +G       I+N    +      +V   ++ +   D  RA+           N ++VG
Sbjct: 266 LNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 325

Query: 169 YGQRGRVEEARKLF----------DKIPVN-----CDRGEGNVR------------FKRN 201
             + G   EA  LF          D + ++     C   +G  +            F  +
Sbjct: 326 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 385

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           I   N+++  Y K   ++ A  IF+ M ++D+ SWN +I+        ++    F +M  
Sbjct: 386 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 445

Query: 262 ----PDTLTWNAMVSGYAQIGNLELAL-------------DFF----------------- 287
               PD  T+ +++   A + +LE  L             D F                 
Sbjct: 446 FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDE 505

Query: 288 -----KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
                 R+  + +VSWN++++G   NK+ E A K F +M   G KPD  TF+++L   + 
Sbjct: 506 AQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCAN 565

Query: 343 IVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  + LG QIH Q++ + ++ D  I++ L+ MYA+CG + ++ ++FE+++  ++ VSWNA
Sbjct: 566 LATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEK-RDFVSWNA 624

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI G A HG   EAL +F+ M+   V+P + TF++VL AC+H GL ++G ++F  M   Y
Sbjct: 625 MICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHY 684

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
            +EP++EHFA +VDI+GR    ++A+  I  MPF+ D  +W  LL  C++  +VE+A++A
Sbjct: 685 KLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELA 744

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A  ++ ++P++S+ Y+LL N+YA+ G+W D +  R L+K   +KK  G SW++
Sbjct: 745 ASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIE 797



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 140/512 (27%), Positives = 232/512 (45%), Gaps = 58/512 (11%)

Query: 51  LFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANA 110
           +FD MP RD V+WNT+++ Y+  G++  A+ LF+ MP  +VVSWNA++SG+ Q G    +
Sbjct: 74  VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 133

Query: 111 IEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYN 163
           ++ F  M  R    D  + + L+       EL    +V    VK G   D     VR  +
Sbjct: 134 VDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEID-----VRTGS 188

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
            L+  YG+   +++A   F  +P            +RN VSW + I    +    V   E
Sbjct: 189 ALVDMYGKCRSLDDALCFFYGMP------------ERNWVSWGAAIAGCVQNEQYVRGLE 236

Query: 224 IFEQMLE--------------RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA 269
           +F +M                R   + + + +G    L      N F      D +   A
Sbjct: 237 LFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTG--RQLHAHAIKNKF----SSDRVVGTA 290

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +V  YA+  +L  A   F  +P   + + N+M+ G         A+ LF  M     + D
Sbjct: 291 IVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFD 350

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFE 388
             + S + S  +       G Q+H +  K+    D+ +NNA++ +Y +C A++EA +IF+
Sbjct: 351 VVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQ 410

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
            MK  K+ VSWNA+I     +G   + +  F  M  F + P   T+ SVL ACA    +E
Sbjct: 411 GMK-QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLE 469

Query: 449 EGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM---DLIKGMPFEPDKAVWGA 504
            G   H K + +  G +  +   +++VD+  + G +++A    D I G         W A
Sbjct: 470 YGLMVHDKVIKSGLGSDAFVA--STVVDMYCKCGIIDEAQKLHDRIGGQQV----VSWNA 523

Query: 505 LLGACRVHNNVELAQ-VAAEAL-MKVEPENST 534
           +L    ++   E AQ   +E L M ++P++ T
Sbjct: 524 ILSGFSLNKESEEAQKFFSEMLDMGLKPDHFT 555



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 141/291 (48%), Gaps = 36/291 (12%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N ++  YA+      AR +F+ M  RDT SWNTM++ Y H  D+  A  LF  MP PD +
Sbjct: 56  NCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVV 115

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           +WNA+VSGY Q G  + ++D                               LF++M   G
Sbjct: 116 SWNALVSGYCQRGMFQESVD-------------------------------LFVEMARRG 144

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEAR 384
             PDR TF+ +L   S + +L LG+Q+H +  KT +  DV   +AL+ MY +C ++ +A 
Sbjct: 145 VSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDAL 204

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
             F  M   +N VSW A I GC  +      LELF  M+   +  +  ++ S   +CA  
Sbjct: 205 CFFYGMP-ERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAM 263

Query: 445 GLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
             +  GRQ H  ++ N++  +  +    ++VD+  +   L DA     G+P
Sbjct: 264 SCLNTGRQLHAHAIKNKFSSDRVVG--TAIVDVYAKANSLTDARRAFFGLP 312



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 183/387 (47%), Gaps = 57/387 (14%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N L+  Y +      AR++FD +P            +R+ VSWN+M+  Y+ AGD+ +A 
Sbjct: 56  NCLLQMYARCAGAACARRVFDAMP------------RRDTVSWNTMLTAYSHAGDISTAV 103

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW----------- 267
            +F+ M + D  SWN ++SGY      +E+ +LFV+M      PD  T+           
Sbjct: 104 ALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALE 163

Query: 268 ------------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                                   +A+V  Y +  +L+ AL FF  MP++N VSW + IA
Sbjct: 164 ELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIA 223

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-P 362
           GC  N+ Y   ++LFI+MQ  G    + +++S     + +  L+ G Q+H    K     
Sbjct: 224 GCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSS 283

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           D  +  A++ +YA+  ++ +AR  F  +     V + NAM+ G    G   EA+ LF+ M
Sbjct: 284 DRVVGTAIVDVYAKANSLTDARRAFFGLP-NHTVETSNAMMVGLVRAGLGIEAMGLFQFM 342

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
               +    ++   V SACA      +G+Q H  ++ + + ++  + +  +++D+ G+  
Sbjct: 343 IRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNN--AVLDLYGKCK 400

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGA 508
            L +A  + +GM  + D   W A++ A
Sbjct: 401 ALMEAYLIFQGMK-QKDSVSWNAIIAA 426


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 183/535 (34%), Positives = 293/535 (54%), Gaps = 35/535 (6%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D V  ++++  YAK  E E A++LF+ MP ++V  WN +IS + Q+G    A+ +F  M 
Sbjct: 140 DIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMR 199

Query: 119 ----GRDSASLSALVSGLIQNGELD---EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
                 DS +++  +S   +  +LD   E  + LV  G R D     V A   L+  YG+
Sbjct: 200 RFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDS---FVSA--ALVDMYGK 254

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G++E A ++F+++P             + +V+WNSMI  Y   GD +S  ++F++M   
Sbjct: 255 CGQLEMAIEVFEQMP------------NKTVVAWNSMINGYGFKGDGISCIQLFKRMYSE 302

Query: 232 DT-------FSWNTMISGYIHVLDMEEASNLFVK-MPHPDTLTWNAMVSGYAQIGNLELA 283
                     S     S    +L+ +      ++    PD    ++++  Y + G +E A
Sbjct: 303 GVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESA 362

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              FK MP+   VSWN MI+G  T      A++LF +M     +PD  TF+S+L+  S +
Sbjct: 363 ETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQL 422

Query: 344 VDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             L  G +IH + V + +  +  +  AL+ MYA+CGA+ EA  +F+ +   +++VSW +M
Sbjct: 423 AALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPE-RDLVSWTSM 481

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I    SHG   EALELF  M    V P  +TF+++LSAC+HAGLV++G  HF  M+N YG
Sbjct: 482 ITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYG 541

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP-FEPDKAVWGALLGACRVHNNVELAQVA 521
           I PRIEH++ L+ ++GR GRL +A ++++  P    D  +   L  ACR+H N++L    
Sbjct: 542 IIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEI 601

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           AE L+  +P++S+ Y++L NMYA  G+WD+   VR  MK   +KK  G SW++ +
Sbjct: 602 AENLIDKDPDDSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEIN 656



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 132/460 (28%), Positives = 208/460 (45%), Gaps = 74/460 (16%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPV------------NCDRGEGNVR------------- 197
           N L+ GY +    +EA  LFDK+              +  +  G +R             
Sbjct: 74  NGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLV 133

Query: 198 ---FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASN 254
                 +IV  +S++  YAK  +   A ++F++M ++D   WNT+IS Y      EEA  
Sbjct: 134 KEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALR 193

Query: 255 LFVKMP----HPDTLTWN-----------------------------------AMVSGYA 275
            F  M      PD++T                                     A+V  Y 
Sbjct: 194 YFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYG 253

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           + G LE+A++ F++MP K +V+WNSMI G     D    I+LF +M  EG KP   T +S
Sbjct: 254 KCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTS 313

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
            L   S    L  G  +H  + +  I PD+ +N++L+ +Y +CG +  A  IF+ M    
Sbjct: 314 TLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMP-KT 372

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
             VSWN MI G  + G   +AL LF  M    V P  ITF SVL+AC+    +E+GR+  
Sbjct: 373 TTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGRE-I 431

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
            +++ E  +        +L+D+  + G +E+A  + K +P E D   W +++ A   H  
Sbjct: 432 HNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLP-ERDLVSWTSMITAYGSHGR 490

Query: 515 V-ELAQVAAEALMK-VEPENSTPYVLLYNMYADVGRWDDA 552
           V E  ++ AE L   V+P+  T ++ + +  +  G  DD 
Sbjct: 491 VYEALELFAEMLQSNVKPDRVT-FLAILSACSHAGLVDDG 529



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 204/447 (45%), Gaps = 82/447 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y K  E   A KLFDEMP +DV  WN +IS Y     SG  EEA   F +M     
Sbjct: 147 LVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQ---SGKFEEALRYFGMMRRFGF 203

Query: 57  ERDCVTWNTVISG-----------------------------------YAKTGEMEEALR 81
           E D VT  T IS                                    Y K G++E A+ 
Sbjct: 204 EPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIE 263

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVSGLIQN 135
           +F  MP + VV+WN+MI+G+   GD  + I+ F RM      P   + + + +     Q+
Sbjct: 264 VFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACS--QS 321

Query: 136 GELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
            +L E   V   +++   + D     +   ++L+  Y + G+VE A  +F  +P      
Sbjct: 322 AQLLEGKFVHGYIIRNRIQPD-----IFLNSSLMDLYFKCGKVESAETIFKLMP------ 370

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLD 248
                 K   VSWN MI  Y   G +  A  +F +M    +E D  ++ ++++    +  
Sbjct: 371 ------KTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAA 424

Query: 249 ME---EASNLFVKMPHPDT-LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           +E   E  NL V+    +  +   A++  YA+ G +E A   FK +P+++LVSW SMI  
Sbjct: 425 LEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITA 484

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMV-TKTVI 361
             ++     A++LF +M     KPDR TF +ILS  S  G+VD  L    +QM+    +I
Sbjct: 485 YGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGL-YHFNQMINVYGII 543

Query: 362 PDVPINNALITMYARCGAIVEARIIFE 388
           P +   + LIT+  R G + EA  I +
Sbjct: 544 PRIEHYSCLITLLGRAGRLHEAYEILQ 570



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 122/237 (51%), Gaps = 9/237 (3%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW-NSMIAGCETNKDYEGAIKLFIQ- 320
           D      ++S Y      + A + F  +     +S  N ++AG   N  Y+ A+ LF + 
Sbjct: 37  DVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKL 96

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGA 379
           M     KPD +T+ S+L    G+  + LG  IH  +V + ++ D+ + ++L+ MYA+C  
Sbjct: 97  MCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNE 156

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
              A  +F+EM   K+V  WN +I      G   EAL  F  MR F   P  +T  + +S
Sbjct: 157 FECAVKLFDEMP-DKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAIS 215

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF--ASLVDIVGRHGRLEDAMDLIKGMP 494
           +CA    ++ GR+  K +VN  G   R++ F  A+LVD+ G+ G+LE A+++ + MP
Sbjct: 216 SCARLLDLDRGREIHKELVNS-GF--RMDSFVSAALVDMYGKCGQLEMAIEVFEQMP 269



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 4/182 (2%)

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIF 387
           D      +L  S     L  G  +HQ +VT  +  DV +   LI++Y  C     A+ +F
Sbjct: 2   DARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVF 61

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL-PTYITFISVLSACAHAGL 446
           + ++    +   N ++ G   +    EAL LF  +  +  L P   T+ SVL AC     
Sbjct: 62  DVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRR 121

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           V  G+     +V E G+   I   +SLV +  +    E A+ L   MP + D A W  ++
Sbjct: 122 VVLGQMIHTCLVKE-GLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMP-DKDVACWNTVI 179

Query: 507 GA 508
             
Sbjct: 180 SC 181


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 192/606 (31%), Positives = 315/606 (51%), Gaps = 62/606 (10%)

Query: 17  LFDEMPQRDVVSWNVMISGYISS-------------RGSGFLEEARYLFDIMPE------ 57
           +FDEMP+R+ VS+  +I GY  S              G G  E   ++F  + +      
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGH-ELNPFVFTTVLKLLVSME 60

Query: 58  --------RDCV----------TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMIS 99
                     CV              +I  Y+ +G +  A  +F+ + ++++VSW  MI+
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 100 GFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN--GELDEAARVLVKCGSRCDGGED 157
            + +N   + A+EFF +M        +   +G+++   G  +  A   V C       E 
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
            +     L+  Y + G  ++A + F  +P            K +++ W+ MI  +A++G 
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMP------------KNDVIPWSFMISRFAQSGQ 228

Query: 218 VVSAREIFEQMLE------RDTFSWNTMISGYIHVLDMEEA--SNLFVKMPHPDTLTWNA 269
              A EIF QM        + TFS     S  I  LD+ +    +        D    NA
Sbjct: 229 SEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNA 288

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +++ YA+ G +E +++ F+ +  +N VSWN++I       D E A+ LF  M     +  
Sbjct: 289 LMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQAT 348

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFE 388
             T+SSIL   + +  L LG+Q+H +  KT+   DV + NALI MYA+CG+I +AR +F+
Sbjct: 349 EVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFD 408

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
            + L ++ VSWNA+I G + HG   EA+++F  M+  K  P  +TF+ VLSAC++ G ++
Sbjct: 409 MLDL-RDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLD 467

Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           EG+Q+F SM  +YGIEP +EH+  +V ++GR G L+ A+  I+ +PFEP   +W ALLGA
Sbjct: 468 EGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGA 527

Query: 509 CRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPT 568
           C +HN+VEL +++A+ ++++EP +   +VLL N+YA   RW +   VR  MK   +KK  
Sbjct: 528 CVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEP 587

Query: 569 GYSWVD 574
           G SW++
Sbjct: 588 GLSWIE 593



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 17/159 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K   +  AR +FD +  RD VSWN +I GY S  G G   EA  +F++M E  C
Sbjct: 390 LIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGY-SMHGLGV--EAIKMFNLMKETKC 446

Query: 61  ----VTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
               +T+  V+S  + TG ++E  + F SM     +      +  M+    ++G++  A+
Sbjct: 447 KPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAV 506

Query: 112 EFFDRMPGRDSASL-SALVSGLIQNGELD----EAARVL 145
           +F + +P   S  +  AL+   + + +++     A RVL
Sbjct: 507 KFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVL 545


>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
 gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g45350, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
 gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
          Length = 613

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 172/484 (35%), Positives = 260/484 (53%), Gaps = 51/484 (10%)

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
           N +I  +L+ G +  + + FDRMP RDS S                              
Sbjct: 160 NCLIGLYLKCGCLGLSRQMFDRMPKRDSVS------------------------------ 189

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
                  YN++I GY + G +  AR+LFD +P+            +N++SWNSMI  YA+
Sbjct: 190 -------YNSMIDGYVKCGLIVSARELFDLMPME----------MKNLISWNSMISGYAQ 232

Query: 215 AGDVVS-AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
             D V  A ++F  M E+D  SWN+MI GY+    +E+A  LF  MP  D +TW  M+ G
Sbjct: 233 TSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDG 292

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK-PDRHT 332
           YA++G +  A   F +MP +++V++NSM+AG   NK +  A+++F  M+ E    PD  T
Sbjct: 293 YAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTT 352

Query: 333 FSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
              +L   + +  L   + +H  +V K       +  ALI MY++CG+I  A ++FE ++
Sbjct: 353 LVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIE 412

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             K++  WNAMIGG A HG    A ++   +    + P  ITF+ VL+AC+H+GLV+EG 
Sbjct: 413 N-KSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGL 471

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
             F+ M  ++ IEPR++H+  +VDI+ R G +E A +LI+ MP EP+  +W   L AC  
Sbjct: 472 LCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSH 531

Query: 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           H   E  ++ A+ L+     N + YVLL NMYA  G W D   VR +MK   I+K  G S
Sbjct: 532 HKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCS 591

Query: 572 WVDF 575
           W++ 
Sbjct: 592 WIEL 595



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 207/423 (48%), Gaps = 66/423 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ER 58
           +I  Y+K   +  +R++FD MP+RD VS+N MI GY+     G +  AR LFD+MP   +
Sbjct: 162 LIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVK---CGLIVSARELFDLMPMEMK 218

Query: 59  DCVTWNTVISGYAKTGE-MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           + ++WN++ISGYA+T + ++ A +LF  MP ++++SWN+MI G++++G + +A   FD M
Sbjct: 219 NLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVM 278

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P RD                                     V  + T+I GY + G V  
Sbjct: 279 PRRD-------------------------------------VVTWATMIDGYAKLGFVHH 301

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-----LERD 232
           A+ LFD++P             R++V++NSM+  Y +    + A EIF  M     L  D
Sbjct: 302 AKTLFDQMP------------HRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPD 349

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN----AMVSGYAQIGNLELALDFFK 288
             +   ++     +  + +A ++ + +             A++  Y++ G+++ A+  F+
Sbjct: 350 DTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFE 409

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            +  K++  WN+MI G   +   E A  + +Q++    KPD  TF  +L+  S    +  
Sbjct: 410 GIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKE 469

Query: 349 GMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           G+   +++ +   + P +     ++ + +R G+I  A+ + EEM +  N V W   +  C
Sbjct: 470 GLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTAC 529

Query: 407 ASH 409
           + H
Sbjct: 530 SHH 532



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 173/359 (48%), Gaps = 62/359 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQ--RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           MI GYVK   +  AR+LFD MP   ++++SWN MISGY  ++ S  ++ A  LF  MPE+
Sbjct: 193 MIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGY--AQTSDGVDIASKLFADMPEK 250

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D ++WN++I GY K G +E+A  LF+ MP R+VV+W  MI G+ + G V +A   FD+MP
Sbjct: 251 DLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMP 310

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV---GYGQRGRV 175
            RD  + +++++G +QN    EA  +     S  +    L+    TL++      Q GR+
Sbjct: 311 HRDVVAYNSMMAGYVQNKYHMEALEIF----SDMEKESHLLPDDTTLVIVLPAIAQLGRL 366

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
            +A  +   I        G +          ++I  Y+K G +  A  +FE +  +    
Sbjct: 367 SKAIDMHLYIVEKQFYLGGKLGV--------ALIDMYSKCGSIQHAMLVFEGIENKSIDH 418

Query: 236 WNTMISGY-IHVLDMEEASNLFVKMPH----PDTLT------------------------ 266
           WN MI G  IH L  E A ++ +++      PD +T                        
Sbjct: 419 WNAMIGGLAIHGLG-ESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELM 477

Query: 267 ------------WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
                       +  MV   ++ G++ELA +  + MP + N V W + +  C  +K++E
Sbjct: 478 RRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFE 536



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 11/211 (5%)

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WN++I      KD   A+ L   M   G   D+ + S +L   S +  +  GMQIH  + 
Sbjct: 89  WNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLK 148

Query: 358 KTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           KT +  D+ + N LI +Y +CG +  +R +F+ M   ++ VS+N+MI G    G    A 
Sbjct: 149 KTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMP-KRDSVSYNSMIDGYVKCGLIVSAR 207

Query: 417 ELFKSM-RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           ELF  M    K L ++ + IS  +  +    V+   + F  M      E  +  + S++D
Sbjct: 208 ELFDLMPMEMKNLISWNSMISGYAQTSDG--VDIASKLFADMP-----EKDLISWNSMID 260

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
              +HGR+EDA  L   MP   D   W  ++
Sbjct: 261 GYVKHGRIEDAKGLFDVMP-RRDVVTWATMI 290



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 162/385 (42%), Gaps = 101/385 (26%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNL---------------------------FVK---MPH 261
           D F WN +I  + H  D  +A  L                           FVK     H
Sbjct: 85  DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 144

Query: 262 ---------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ-------------------- 292
                     D    N ++  Y + G L L+   F RMP+                    
Sbjct: 145 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIV 204

Query: 293 -------------KNLVSWNSMIAG-CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
                        KNL+SWNSMI+G  +T+   + A KLF  M     + D  +++S++ 
Sbjct: 205 SARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADM----PEKDLISWNSMID 260

Query: 339 --MSSGIVDLHLGMQIHQMVTKTVIP--DVPINNALITMYARCGAIVEARIIFEEMKLLK 394
             +  G ++   G+         V+P  DV     +I  YA+ G +  A+ +F++M   +
Sbjct: 261 GYVKHGRIEDAKGLF-------DVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMP-HR 312

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSM-RSFKVLPTYITFISVLSACAHAGLVEEG-RQ 452
           +VV++N+M+ G   + +  EALE+F  M +   +LP   T + VL A A  G + +    
Sbjct: 313 DVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDM 372

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV--WGALLGACR 510
           H   +  ++ +  ++    +L+D+  + G ++ AM + +G+    +K++  W A++G   
Sbjct: 373 HLYIVEKQFYLGGKLG--VALIDMYSKCGSIQHAMLVFEGI---ENKSIDHWNAMIGGLA 427

Query: 511 VHNNVELAQVAAEALMKVEPENSTP 535
           +H    L + A + L+++E  +  P
Sbjct: 428 IHG---LGESAFDMLLQIERLSLKP 449


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 185/515 (35%), Positives = 293/515 (56%), Gaps = 36/515 (6%)

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQ 134
           A ++F+ MP RN+V+W  MI+ F Q G   +AI+ F  M       D  + S+++S   +
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 135 NGELDEAARV---LVKCGSRCDG--GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
            G L    ++   +++ G   D   G  LV  Y          G V+++RK+F+++P   
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC----AADGSVDDSRKVFEQMP--- 116

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDV-VSAREIFEQMLE----RDTFSWNTMISGYI 244
                    + N++SW ++I  YA++G+    A E+F +M+      + FS+++++    
Sbjct: 117 ---------EHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACG 167

Query: 245 HVLDM---EEASNLFVKMPHPDT-LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           ++ D    E+  +  VK+         N+++S YA+ G +E A   F  + +KNLVS+N+
Sbjct: 168 NLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNA 227

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKT 359
           ++ G   N   E A  LF ++   G      TF+S+LS ++ I  +  G QIH +++   
Sbjct: 228 IVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGG 287

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              +  I NALI+MY+RCG I  A  +F EM+  +NV+SW +MI G A HGFAT ALE+F
Sbjct: 288 YKSNQCICNALISMYSRCGNIEAAFQVFNEMED-RNVISWTSMITGFAKHGFATRALEMF 346

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M      P  IT+++VLSAC+H G++ EG++HF SM  E+GI PR+EH+A +VD++GR
Sbjct: 347 HKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGR 406

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G L +AM+ I  MP   D  VW  LLGACRVH N EL + AAE +++ EP++   Y+LL
Sbjct: 407 SGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILL 466

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N++A  G+W D  ++R  MK  N+ K  G SW++
Sbjct: 467 SNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIE 501



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 213/464 (45%), Gaps = 90/464 (19%)

Query: 12  AKARKLFDEMPQRDVVSWNVMI---------------------SGYISSRGS-------- 42
           A A K+FD+MP+R++V+W +MI                     SGY+  R +        
Sbjct: 2   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 61

Query: 43  ---GFLEEARYLFD----IMPERDCVTWNTVISGYAKT---GEMEEALRLFNSMPARNVV 92
              G L   + L      +    D     +++  YAK    G ++++ ++F  MP  NV+
Sbjct: 62  TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 121

Query: 93  SWNAMISGFLQNGDV-ANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSR 151
           SW A+I+ + Q+G+    AIE F +M           +SG I+      ++ VL  CG+ 
Sbjct: 122 SWTAIITAYAQSGECDKEAIELFCKM-----------ISGHIRPNHFSFSS-VLKACGNL 169

Query: 152 CD--GGEDLVRAY-------------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            D   GE  V +Y             N+LI  Y + GR+E+ARK FD            +
Sbjct: 170 SDPYTGEQ-VYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD------------I 216

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEA 252
            F++N+VS+N+++  YAK      A  +F ++ +       F++ +++SG   +  M + 
Sbjct: 217 LFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKG 276

Query: 253 SNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             +  ++       +    NA++S Y++ GN+E A   F  M  +N++SW SMI G   +
Sbjct: 277 EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKH 336

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPI 366
                A+++F +M   G KP+  T+ ++LS  S +  +  G +    + K   ++P +  
Sbjct: 337 GFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEH 396

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
              ++ +  R G +VEA      M L+ + + W  ++G C  HG
Sbjct: 397 YACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHG 440



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 164/383 (42%), Gaps = 59/383 (15%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +IS Y  S   G +E+AR  FDI+ E++ V++N ++ GYAK  + EEA  LFN +   
Sbjct: 195 NSLISMYARS---GRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIA-- 249

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
                          G   +A  F   + G  +AS+ A+  G   +G L +      +C 
Sbjct: 250 -------------DTGIGISAFTFASLLSG--AASIGAMGKGEQIHGRLLKGGYKSNQC- 293

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
                        N LI  Y + G +E A ++F+++              RN++SW SMI
Sbjct: 294 -----------ICNALISMYSRCGNIEAAFQVFNEME------------DRNVISWTSMI 330

Query: 210 MCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEEASNLFVKMPH---- 261
             +AK G    A E+F +MLE  T     ++  ++S   HV  + E    F  M      
Sbjct: 331 TGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGI 390

Query: 262 -PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE-GAIKLF 318
            P    +  MV    + G L  A++F   MP   + + W +++  C  + + E G     
Sbjct: 391 VPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAE 450

Query: 319 IQMQVEGEKPDRHTFSSILSMSSG----IVDLHLGMQIHQMVTKTVIPDVPINNALITMY 374
           + ++ E + P  +   S L  S+G    +V +   M+   ++ +     + + N +   +
Sbjct: 451 MILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFH 510

Query: 375 ARCGAIVEARIIFEEMKLLKNVV 397
               +  +A  I++E+  L + +
Sbjct: 511 VGETSHPQAWQIYQELDQLASKI 533



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 111/273 (40%), Gaps = 54/273 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           +IS Y +   M  ARK FD + ++++VS+N ++ GY                        
Sbjct: 197 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 256

Query: 37  -------------ISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
                        I + G G     R L        C+  N +IS Y++ G +E A ++F
Sbjct: 257 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCIC-NALISMYSRCGNIEAAFQVF 315

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELD 139
           N M  RNV+SW +MI+GF ++G    A+E F +M       +  +  A++S     G + 
Sbjct: 316 NEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 375

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           E  +       +  G    +  Y  ++   G+ G + EA +  + +P+  D         
Sbjct: 376 EGQKHF-NSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMAD--------- 425

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
              + W +++      G+    R   E +LE++
Sbjct: 426 --ALVWRTLLGACRVHGNTELGRHAAEMILEQE 456


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 202/619 (32%), Positives = 312/619 (50%), Gaps = 76/619 (12%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC----VTWNTV 66
           M  A +LF  MP+++ VSWN +++GY +  G G  ++   LF  M E +      T +TV
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGY-AQLGDG--KKVLKLFCKMKECETKFSKFTLSTV 57

Query: 67  ISGYAKTGEMEE-----------------------------------ALRLFNSMPARNV 91
           + G A TG + E                                   AL++F  +   +V
Sbjct: 58  LKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDV 117

Query: 92  VSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVK 147
           V+W+AMI+G  Q G    A E F  M  +    +  +LS+LVS     G+L     +   
Sbjct: 118 VAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIH-- 175

Query: 148 CGSRCDGG---EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
            G  C  G   ++LV   N LI+ Y +   VE+  K+F+ +               ++VS
Sbjct: 176 -GCICKYGFESDNLVS--NPLIMMYMKSRCVEDGNKVFEAMT------------NPDLVS 220

Query: 205 WNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLFVKM- 259
           WN+++  +  +        IF QML    + + F++ +++     +LD E    +   + 
Sbjct: 221 WNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHII 280

Query: 260 ---PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
                 D     A+V  YA+   LE A   F R+  +++ SW  +I+G       E A+K
Sbjct: 281 KNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVK 340

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYA 375
            F QMQ EG KP+ +T +S LS  S +  L  G Q+H +  K     D+ + +AL+ +Y 
Sbjct: 341 YFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYG 400

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +CG +  A  IF+ + + +++VSWN +I G + HG   +ALE F+ M S  ++P   TFI
Sbjct: 401 KCGCMEHAEAIFKGL-ISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFI 459

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
            VLSAC+  GLVEEG++ F SM   YGI P IEH+A +VDI+GR G+  +    I+ M  
Sbjct: 460 GVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNL 519

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
            P   +W  +LGAC++H NV+  + AA+ L ++EP   + Y+LL N++A  GRWDD   +
Sbjct: 520 TPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNI 579

Query: 556 RLLMKSNNIKKPTGYSWVD 574
           R LM S  IKK  G SWV+
Sbjct: 580 RALMTSRGIKKEPGCSWVE 598


>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
          Length = 606

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 172/484 (35%), Positives = 260/484 (53%), Gaps = 51/484 (10%)

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
           N +I  +L+ G +  + + FDRMP RDS S                              
Sbjct: 153 NCLIGLYLKCGCLGLSRQMFDRMPKRDSVS------------------------------ 182

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
                  YN++I GY + G +  AR+LFD +P+            +N++SWNSMI  YA+
Sbjct: 183 -------YNSMIDGYVKCGLIVSARELFDLMPME----------MKNLISWNSMISGYAQ 225

Query: 215 AGDVVS-AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
             D V  A ++F  M E+D  SWN+MI GY+    +E+A  LF  MP  D +TW  M+ G
Sbjct: 226 TSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDG 285

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK-PDRHT 332
           YA++G +  A   F +MP +++V++NSM+AG   NK +  A+++F  M+ E    PD  T
Sbjct: 286 YAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTT 345

Query: 333 FSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
              +L   + +  L   + +H  +V K       +  ALI MY++CG+I  A ++FE ++
Sbjct: 346 LVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIE 405

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             K++  WNAMIGG A HG    A ++   +    + P  ITF+ VL+AC+H+GLV+EG 
Sbjct: 406 N-KSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGL 464

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
             F+ M  ++ IEPR++H+  +VDI+ R G +E A +LI+ MP EP+  +W   L AC  
Sbjct: 465 LCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSH 524

Query: 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           H   E  ++ A+ L+     N + YVLL NMYA  G W D   VR +MK   I+K  G S
Sbjct: 525 HKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCS 584

Query: 572 WVDF 575
           W++ 
Sbjct: 585 WIEL 588



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 207/423 (48%), Gaps = 66/423 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ER 58
           +I  Y+K   +  +R++FD MP+RD VS+N MI GY+     G +  AR LFD+MP   +
Sbjct: 155 LIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVK---CGLIVSARELFDLMPMEMK 211

Query: 59  DCVTWNTVISGYAKTGE-MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           + ++WN++ISGYA+T + ++ A +LF  MP ++++SWN+MI G++++G + +A   FD M
Sbjct: 212 NLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVM 271

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           P RD                                     V  + T+I GY + G V  
Sbjct: 272 PRRD-------------------------------------VVTWATMIDGYAKLGFVHH 294

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-----LERD 232
           A+ LFD++P             R++V++NSM+  Y +    + A EIF  M     L  D
Sbjct: 295 AKTLFDQMP------------HRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPD 342

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN----AMVSGYAQIGNLELALDFFK 288
             +   ++     +  + +A ++ + +             A++  Y++ G+++ A+  F+
Sbjct: 343 DTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFE 402

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            +  K++  WN+MI G   +   E A  + +Q++    KPD  TF  +L+  S    +  
Sbjct: 403 GIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKE 462

Query: 349 GMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           G+   +++ +   + P +     ++ + +R G+I  A+ + EEM +  N V W   +  C
Sbjct: 463 GLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTAC 522

Query: 407 ASH 409
           + H
Sbjct: 523 SHH 525



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 216/445 (48%), Gaps = 47/445 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQ--RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           MI GYVK   +  AR+LFD MP   ++++SWN MISGY  ++ S  ++ A  LF  MPE+
Sbjct: 186 MIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGY--AQTSDGVDIASKLFADMPEK 243

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D ++WN++I GY K G +E+A  LF+ MP R+VV+W  MI G+ + G V +A   FD+MP
Sbjct: 244 DLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMP 303

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV---GYGQRGRV 175
            RD  + +++++G +QN    EA  +     S  +    L+    TL++      Q GR+
Sbjct: 304 HRDVVAYNSMMAGYVQNKYHMEALEIF----SDMEKESHLLPDDTTLVIVLPAIAQLGRL 359

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
            +A  +   I        G +          ++I  Y+K G +  A  +FE +  +    
Sbjct: 360 SKAIDMHLYIVEKQFYLGGKLGV--------ALIDMYSKCGSIQHAMLVFEGIENKSIDH 411

Query: 236 WNTMISGY-IHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
           WN MI G  IH L  E A ++ +++      PD +T+  +++  +  G ++  L  F+ M
Sbjct: 412 WNAMIGGLAIHGLG-ESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELM 470

Query: 291 PQKN-----LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            +K+     L  +  M+     +   E A  L  +M VE   P+   + + L+  S    
Sbjct: 471 RRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVE---PNDVIWRTFLTACSH--- 524

Query: 346 LHLGMQIHQMVTKTVIPDVPINNA----LITMYARCGA---IVEARIIFEEMKLLK-NVV 397
            H   +  ++V K +I     N +    L  MYA  G    +   R + +E K+ K    
Sbjct: 525 -HKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGC 583

Query: 398 SWNAMIGGCASHGFATEALELFKSM 422
           SW  + G    H F  +++E+  ++
Sbjct: 584 SWIELDG--RVHEFFVDSIEVSSTL 606



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 11/211 (5%)

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WN++I      KD   A+ L   M   G   D+ + S +L   S +  +  GMQIH  + 
Sbjct: 82  WNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLK 141

Query: 358 KTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           KT +  D+ + N LI +Y +CG +  +R +F+ M   ++ VS+N+MI G    G    A 
Sbjct: 142 KTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMP-KRDSVSYNSMIDGYVKCGLIVSAR 200

Query: 417 ELFKSM-RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           ELF  M    K L ++ + IS  +  +    V+   + F  M      E  +  + S++D
Sbjct: 201 ELFDLMPMEMKNLISWNSMISGYAQTSDG--VDIASKLFADMP-----EKDLISWNSMID 253

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
              +HGR+EDA  L   MP   D   W  ++
Sbjct: 254 GYVKHGRIEDAKGLFDVMP-RRDVVTWATMI 283



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 162/385 (42%), Gaps = 101/385 (26%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNL---------------------------FVK---MPH 261
           D F WN +I  + H  D  +A  L                           FVK     H
Sbjct: 78  DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 137

Query: 262 ---------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ-------------------- 292
                     D    N ++  Y + G L L+   F RMP+                    
Sbjct: 138 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIV 197

Query: 293 -------------KNLVSWNSMIAG-CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
                        KNL+SWNSMI+G  +T+   + A KLF  M     + D  +++S++ 
Sbjct: 198 SARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADM----PEKDLISWNSMID 253

Query: 339 --MSSGIVDLHLGMQIHQMVTKTVIP--DVPINNALITMYARCGAIVEARIIFEEMKLLK 394
             +  G ++   G+         V+P  DV     +I  YA+ G +  A+ +F++M   +
Sbjct: 254 GYVKHGRIEDAKGLF-------DVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMP-HR 305

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSM-RSFKVLPTYITFISVLSACAHAGLVEEG-RQ 452
           +VV++N+M+ G   + +  EALE+F  M +   +LP   T + VL A A  G + +    
Sbjct: 306 DVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDM 365

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV--WGALLGACR 510
           H   +  ++ +  ++    +L+D+  + G ++ AM + +G+    +K++  W A++G   
Sbjct: 366 HLYIVEKQFYLGGKLG--VALIDMYSKCGSIQHAMLVFEGI---ENKSIDHWNAMIGGLA 420

Query: 511 VHNNVELAQVAAEALMKVEPENSTP 535
           +H    L + A + L+++E  +  P
Sbjct: 421 IHG---LGESAFDMLLQIERLSLKP 442


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 185/515 (35%), Positives = 293/515 (56%), Gaps = 36/515 (6%)

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQ 134
           A ++F+ MP RN+V+W  MI+ F Q G   +AI+ F  M       D  + S+++S   +
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 135 NGELDEAARV---LVKCGSRCDG--GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
            G L    ++   +++ G   D   G  LV  Y          G V+++RK+F+++P   
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC----AADGSVDDSRKVFEQMP--- 121

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDV-VSAREIFEQMLE----RDTFSWNTMISGYI 244
                    + N++SW ++I  YA++G+    A E+F +M+      + FS+++++    
Sbjct: 122 ---------EHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACG 172

Query: 245 HVLDM---EEASNLFVKMPHPDT-LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           ++ D    E+  +  VK+         N+++S YA+ G +E A   F  + +KNLVS+N+
Sbjct: 173 NLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNA 232

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKT 359
           ++ G   N   E A  LF ++   G      TF+S+LS ++ I  +  G QIH +++   
Sbjct: 233 IVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGG 292

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
              +  I NALI+MY+RCG I  A  +F EM+  +NV+SW +MI G A HGFAT ALE+F
Sbjct: 293 YKSNQCICNALISMYSRCGNIEAAFQVFNEMED-RNVISWTSMITGFAKHGFATRALEMF 351

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M      P  IT+++VLSAC+H G++ EG++HF SM  E+GI PR+EH+A +VD++GR
Sbjct: 352 HKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGR 411

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G L +AM+ I  MP   D  VW  LLGACRVH N EL + AAE +++ EP++   Y+LL
Sbjct: 412 SGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILL 471

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N++A  G+W D  ++R  MK  N+ K  G SW++
Sbjct: 472 SNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIE 506



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 213/464 (45%), Gaps = 90/464 (19%)

Query: 12  AKARKLFDEMPQRDVVSWNVMI---------------------SGYISSRGS-------- 42
           A A K+FD+MP+R++V+W +MI                     SGY+  R +        
Sbjct: 7   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 66

Query: 43  ---GFLEEARYLFD----IMPERDCVTWNTVISGYAKT---GEMEEALRLFNSMPARNVV 92
              G L   + L      +    D     +++  YAK    G ++++ ++F  MP  NV+
Sbjct: 67  TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 126

Query: 93  SWNAMISGFLQNGDV-ANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSR 151
           SW A+I+ + Q+G+    AIE F +M           +SG I+      ++ VL  CG+ 
Sbjct: 127 SWTAIITAYAQSGECDKEAIELFCKM-----------ISGHIRPNHFSFSS-VLKACGNL 174

Query: 152 CD--GGEDLVRAY-------------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            D   GE  V +Y             N+LI  Y + GR+E+ARK FD            +
Sbjct: 175 SDPYTGEQ-VYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD------------I 221

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEA 252
            F++N+VS+N+++  YAK      A  +F ++ +       F++ +++SG   +  M + 
Sbjct: 222 LFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKG 281

Query: 253 SNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             +  ++       +    NA++S Y++ GN+E A   F  M  +N++SW SMI G   +
Sbjct: 282 EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKH 341

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPI 366
                A+++F +M   G KP+  T+ ++LS  S +  +  G +    + K   ++P +  
Sbjct: 342 GFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEH 401

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
              ++ +  R G +VEA      M L+ + + W  ++G C  HG
Sbjct: 402 YACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHG 445



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 164/383 (42%), Gaps = 59/383 (15%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +IS Y  S   G +E+AR  FDI+ E++ V++N ++ GYAK  + EEA  LFN +   
Sbjct: 200 NSLISMYARS---GRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIA-- 254

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
                          G   +A  F   + G  +AS+ A+  G   +G L +      +C 
Sbjct: 255 -------------DTGIGISAFTFASLLSG--AASIGAMGKGEQIHGRLLKGGYKSNQC- 298

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
                        N LI  Y + G +E A ++F+++              RN++SW SMI
Sbjct: 299 -----------ICNALISMYSRCGNIEAAFQVFNEME------------DRNVISWTSMI 335

Query: 210 MCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEEASNLFVKMPH---- 261
             +AK G    A E+F +MLE  T     ++  ++S   HV  + E    F  M      
Sbjct: 336 TGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGI 395

Query: 262 -PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE-GAIKLF 318
            P    +  MV    + G L  A++F   MP   + + W +++  C  + + E G     
Sbjct: 396 VPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAE 455

Query: 319 IQMQVEGEKPDRHTFSSILSMSSG----IVDLHLGMQIHQMVTKTVIPDVPINNALITMY 374
           + ++ E + P  +   S L  S+G    +V +   M+   ++ +     + + N +   +
Sbjct: 456 MILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFH 515

Query: 375 ARCGAIVEARIIFEEMKLLKNVV 397
               +  +A  I++E+  L + +
Sbjct: 516 VGETSHPQAWQIYQELDQLASKI 538



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 111/273 (40%), Gaps = 54/273 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           +IS Y +   M  ARK FD + ++++VS+N ++ GY                        
Sbjct: 202 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 261

Query: 37  -------------ISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
                        I + G G     R L        C+  N +IS Y++ G +E A ++F
Sbjct: 262 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCIC-NALISMYSRCGNIEAAFQVF 320

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELD 139
           N M  RNV+SW +MI+GF ++G    A+E F +M       +  +  A++S     G + 
Sbjct: 321 NEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 380

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           E  +       +  G    +  Y  ++   G+ G + EA +  + +P+  D         
Sbjct: 381 EGQKHF-NSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMAD--------- 430

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
              + W +++      G+    R   E +LE++
Sbjct: 431 --ALVWRTLLGACRVHGNTELGRHAAEMILEQE 461


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 187/526 (35%), Positives = 275/526 (52%), Gaps = 53/526 (10%)

Query: 58  RDCVTWNTVISGYAKTG-----EMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIE 112
           +D     +++  YA          E +LR+F+ +   NV  WN MI   ++N +   AI 
Sbjct: 64  QDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAIL 123

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
            +  M          +V+    N                          Y  ++      
Sbjct: 124 LYYEM----------MVAHFRPNK-----------------------YTYPAVLKACSDA 150

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE-QMLER 231
           G V E  ++   +  +   G+G++         +S I  YA  G +V AR I + +  E 
Sbjct: 151 GVVAEGVQVHAHLVKHGLGGDGHI--------LSSAIRMYASFGRLVEARRILDDKGGEV 202

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRM 290
           D   WN MI GY+   ++E A  LF  MP    + TWNAM+SG+++ G +E+A +FF  M
Sbjct: 203 DAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEM 262

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
            +++ +SW++MI G      +  A+++F QMQ E  +P +    S+LS  + +  L  G 
Sbjct: 263 KERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGR 322

Query: 351 QIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            IH    +  I  D  +  +L+ MYA+CG I  A  +FE+M   K V SWNAMIGG A H
Sbjct: 323 WIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSN-KEVSSWNAMIGGLAMH 381

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G A +A++LF  M    + P  ITF+ VL+ACAH GLV++G   F SM  EYG+EP+IEH
Sbjct: 382 GRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEH 438

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           +  +VD++GR G L +A  ++  +P EP  AVWGALLGACR H NVEL +   + L+++E
Sbjct: 439 YGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELE 498

Query: 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           P+NS  Y LL N+YA  GRW++  EVR LMK   IK   G S +D 
Sbjct: 499 PQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDL 544



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 183/430 (42%), Gaps = 74/430 (17%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           NV  + Y+S       E +  +FD + + +   WN +I    +  E  +A+ L+  M   
Sbjct: 78  NVSTNRYLS------FESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVA 131

Query: 90  ----NVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEA 141
               N  ++ A++      G VA  ++    +     G D   LS+ +      G L EA
Sbjct: 132 HFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEA 191

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            R+L        GGE     +N +I GY + G VE AR+LF+ +P   DR          
Sbjct: 192 RRILDD-----KGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMP---DRS--------M 235

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           I +WN+MI  +++ G V  ARE F++M ERD  SW+ MI GYI      EA  +F +M  
Sbjct: 236 ISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQK 295

Query: 262 ----------PDTLT------------W-----------------NAMVSGYAQIGNLEL 282
                     P  L+            W                  ++V  YA+ G ++L
Sbjct: 296 EKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDL 355

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A + F++M  K + SWN+MI G   +   E AI LF +M +    P+  TF  +L+  + 
Sbjct: 356 AWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDI---NPNEITFVGVLNACAH 412

Query: 343 IVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
              +  G+ I   + K   V P +     ++ +  R G + EA  +   +        W 
Sbjct: 413 GGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWG 472

Query: 401 AMIGGCASHG 410
           A++G C  HG
Sbjct: 473 ALLGACRKHG 482



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 142/326 (43%), Gaps = 61/326 (18%)

Query: 2   ISGYVKRREMAKARKLFDEMP-QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           I  Y     + +AR++ D+   + D V WN MI GY+     G +E AR LF+ MP+R  
Sbjct: 179 IRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRF---GEVEAARELFEGMPDRSM 235

Query: 61  V-TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
           + TWN +ISG+++ G +E A   F+ M  R+ +SW+AMI G++Q G    A+E F +M  
Sbjct: 236 ISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQK 295

Query: 120 RD----SASLSALVSGLIQNGELDEAARV------------------LVKCGSRCDGGED 157
                    L +++S     G LD+   +                  LV   ++C G  D
Sbjct: 296 EKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC-GRID 354

Query: 158 L------------VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
           L            V ++N +I G    GR E+A  LF K+ +N            N +++
Sbjct: 355 LAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIN-----------PNEITF 403

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD-------MEEASNLFVK 258
             ++   A  G V     IF  M  R  +     I  Y  ++D       + EA  +   
Sbjct: 404 VGVLNACAHGGLVQKGLTIFNSM--RKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSS 461

Query: 259 MP-HPDTLTWNAMVSGYAQIGNLELA 283
           +P  P    W A++    + GN+EL 
Sbjct: 462 IPTEPTPAVWGALLGACRKHGNVELG 487



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 154/339 (45%), Gaps = 39/339 (11%)

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH-PDTLTWNAMVSGYAQIG-----NLELALDFFKRM 290
           NT  +  +H   +++A  L ++  H  D+    ++V  YA +      + E +L  F  +
Sbjct: 40  NTQCTTSLH--HLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFV 97

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
            + N+  WN MI  C  N +   AI L+ +M V   +P+++T+ ++L   S    +  G+
Sbjct: 98  RKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGV 157

Query: 351 QIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           Q+H  +V   +  D  I ++ I MYA  G +VEAR I ++     + V WNAMI G    
Sbjct: 158 QVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRF 217

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G    A ELF+ M    ++ T+   IS  S C   G+VE  R+ F  M     I      
Sbjct: 218 GEVEAARELFEGMPDRSMISTWNAMISGFSRC---GMVEVAREFFDEMKERDEIS----- 269

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGACR----------VHNNVE 516
           +++++D   + G   +A+++   M  E   P K V  ++L AC           +H   +
Sbjct: 270 WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAK 329

Query: 517 LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
              +  + ++            L +MYA  GR D A EV
Sbjct: 330 RNSIQLDGVLGTS---------LVDMYAKCGRIDLAWEV 359



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 112/290 (38%), Gaps = 59/290 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----------------------- 37
           MISG+ +   +  AR+ FDEM +RD +SW+ MI GYI                       
Sbjct: 242 MISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPR 301

Query: 38  ---------SSRGSGFLEEARYLFDIMP----ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                    +    G L++ R++         + D V   +++  YAK G ++ A  +F 
Sbjct: 302 KFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFE 361

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            M  + V SWNAMI G   +G   +AI+ F +M    +      V     +G L +    
Sbjct: 362 KMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDINPNEITFVGVLNACAHGGLVQKGLT 421

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP-----------VNCDRGE 193
           +     +  G E  +  Y  ++   G+ G + EA K+   IP           +   R  
Sbjct: 422 IFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKH 481

Query: 194 GNVRF------------KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
           GNV               +N   +  +   YAKAG      E+ + M ER
Sbjct: 482 GNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKER 531


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 195/629 (31%), Positives = 319/629 (50%), Gaps = 72/629 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--RGSGFLEEARYLF------ 52
           +I+ Y K   + KA+ +FD +  +DV+SWN +I+GY      GS F+ E   LF      
Sbjct: 49  LINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVME---LFQRMRAD 105

Query: 53  DIMPER---------------------------------DCVTWNTVISGYAKTGEMEEA 79
           +I+P                                   D    +++++ Y K G + EA
Sbjct: 106 NILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEA 165

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA----SLSALVSGLIQN 135
             +F+ MP RN V+W  MISG+        A E F+ M   +      + ++++S L   
Sbjct: 166 REVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVP 225

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
             +D   ++   C +   G    +   N L+  Y + G ++++ ++F+            
Sbjct: 226 EFVDSGKQI--HCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFE------------ 271

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEE 251
           +   +N ++W++MI  YA++GD   A ++F +M    +    F+   +++       +EE
Sbjct: 272 MSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEE 331

Query: 252 AS---NLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
                N  +K+     L    A+V  YA+ G  E A   F  + Q +LV W SMIAG   
Sbjct: 332 GKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQ 391

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPI 366
           N + E A+ L+ +MQ+EG  P+  T +S+L   S +     G QIH    K  +  +V I
Sbjct: 392 NGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTI 451

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            +AL TMYA+CG + E  I+F  M   ++++SWNAMI G + +G+  EALELF+ MR   
Sbjct: 452 GSALSTMYAKCGNLEEGNIVFRRMPE-RDIISWNAMISGLSQNGYGKEALELFEEMRQQD 510

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
             P  +TF++VLSAC+H GLV+ G  +F+ M +E+G+ P++EH+A +VD++ R G+L +A
Sbjct: 511 TKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEA 570

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
            + I+    +    +W  LLGACR + N EL   A E LM++  + S+ YVLL  +Y  +
Sbjct: 571 KEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIYTAL 630

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           GR +D   VR +MK   + K  G SW++ 
Sbjct: 631 GRPEDVERVRSMMKVRGVSKEPGCSWIEL 659



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 228/469 (48%), Gaps = 54/469 (11%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANA--IEFFDRMPGRD 121
           N++I+ YAK   + +A  +F+ +  ++V+SWN +I+G+ Q G   ++  +E F RM   +
Sbjct: 47  NSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADN 106

Query: 122 SASLSALVSGLIQNGEL-------DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
               +   SG+              +A  V +K     D     V   ++L+  Y + G 
Sbjct: 107 ILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYD-----VFVGSSLLNMYCKAGL 161

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML--ERD 232
           + EAR++FD++P            +RN V+W +MI  YA       A E+FE M   E D
Sbjct: 162 LFEAREVFDRMP------------ERNEVTWATMISGYAIQRLAGEAFEVFELMRREEED 209

Query: 233 T--FSWNTMISGY-----------IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279
              F++ +++S             IH L ++    +F+ +        NA+V+ YA+ G+
Sbjct: 210 VNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSI-------LNALVTMYAKCGS 262

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           L+ +L  F+    KN ++W++MI G   + D   A+KLF +M   G  P   T   +L+ 
Sbjct: 263 LDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNA 322

Query: 340 SSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            S    +  G Q+H  + K      + I  AL+ MYA+ G   +AR  F  ++   ++V 
Sbjct: 323 CSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQ-QPDLVL 381

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSM 457
           W +MI G   +G   +AL L+  M+   +LP  +T  SVL AC++    ++GRQ H +++
Sbjct: 382 WTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTI 441

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             +YG+   +   ++L  +  + G LE+   + + MP E D   W A++
Sbjct: 442 --KYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMP-ERDIISWNAMI 487


>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 190/584 (32%), Positives = 296/584 (50%), Gaps = 81/584 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS-SRGSGFLEEARYLFDIMPERD 59
           +IS  V  + +   + L  ++ +  +     + +G I      G  E     FD +P + 
Sbjct: 84  LISNCVSAKSLKHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLPNKT 143

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
             TWNT++S Y+K G   +A +LF+ MP RN+VS+N++ISG  ++     A++FF  M  
Sbjct: 144 TRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQN 203

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTL--IVGYGQRGRVEE 177
                    V GL+    LDE   V +     C      +R  + +  IVG+        
Sbjct: 204 G--------VGGLM----LDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVGF-------- 243

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
                                + N++  N++I  Y K G+  S+  +F  M+E+D  SW 
Sbjct: 244 ---------------------RTNLILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWT 282

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           +M+  Y     +++A  +F +MP   T++W A++SG+ + G                   
Sbjct: 283 SMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNG------------------- 323

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
                      + YE A+++F QM  EG  P   TF S+L   +    +  G Q+H  + 
Sbjct: 324 -----------RCYE-ALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQII 371

Query: 358 KTVIPD----VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
           +    D    V + NAL+ MYA+CG +  A  +FE M  +K+VVSWN +I G A +G   
Sbjct: 372 RGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGE 431

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           ++L +F  M    + P ++TF+ VLSAC HAGLV  G +   SM   YG++P+  H+A L
Sbjct: 432 DSLAVFDRMIESNIEPNHVTFLGVLSACNHAGLVNAGLELLDSMERRYGVKPKSNHYALL 491

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDK--AVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
           +D++GR  RLE+AM LI+ +P E     A+WGA+LG CRVH N+ELA+ AAEAL  +EPE
Sbjct: 492 IDLLGRKNRLEEAMCLIEKVPNEISNHIAMWGAVLGGCRVHGNLELARKAAEALFALEPE 551

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           N+  YV+L N+YA  GRW D N +R +MK   +KK   +S ++ 
Sbjct: 552 NTGRYVMLSNIYAASGRWSDTNRIRNVMKERGLKKEPAFSRIEL 595


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 203/627 (32%), Positives = 325/627 (51%), Gaps = 74/627 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y+K       RK+FDEM +R+VV+W  +ISGY  +R S   +E   LF  M     
Sbjct: 134 LVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGY--ARNS-MNDEVLTLFMRMQNEGT 190

Query: 57  -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                                              ++     N++I+ Y K G + +A  
Sbjct: 191 QPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARI 250

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD-------RMPGRDSASLSALVSGLIQ 134
           LF+    ++VV+WN+MISG+  NG    A+  F        R+     AS+  L + L +
Sbjct: 251 LFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKE 310

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
               ++    +VK G   D     +R    L+V Y +   + +A +LF +I        G
Sbjct: 311 LRFTEQLHCSVVKYGFLFDQN---IR--TALMVAYSKCTAMLDALRLFKEI--------G 357

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME 250
            V    N+VSW +MI  + +      A ++F +M  +    + F+++ +++  + V+   
Sbjct: 358 CVG---NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA-LPVISPS 413

Query: 251 EASNLFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           E     VK  +  + T   A++  Y ++G +E A   F  +  K++V+W++M+AG     
Sbjct: 414 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 473

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI-VDLHLGMQIHQMVTKTVI-PDVPIN 367
           + E AIK+F ++   G KP+  TFSSIL++ +     +  G Q H    K+ +   + ++
Sbjct: 474 ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 533

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           +AL+TMYA+ G I  A  +F+  +  K++VSWN+MI G A HG A +AL++FK M+  KV
Sbjct: 534 SALLTMYAKKGNIESAEEVFKRQRE-KDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 592

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
               +TFI V +AC HAGLVEEG ++F  MV +  I P  EH + +VD+  R G+LE AM
Sbjct: 593 KMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAM 652

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
            +I+ MP      +W  +L ACRVH   EL ++AAE ++ ++PE+S  YVLL NMYA+ G
Sbjct: 653 KVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESG 712

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVD 574
            W +  +VR LM   N+KK  GYSW++
Sbjct: 713 DWQERAKVRKLMNERNVKKEPGYSWIE 739



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 202/455 (44%), Gaps = 68/455 (14%)

Query: 100 GFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGS-----RCDG 154
           G + +  + NA   FD+ PGRD  S  +L+ G  ++G   EA R+ +          C  
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDK-IPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
              +++   TL              +LF + +   C +      F  ++    S++  Y 
Sbjct: 96  FSSVLKVSATL------------CDELFGRQLHCQCIK----FGFLDDVSVGTSLVDTYM 139

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW-- 267
           K  +    R++F++M ER+  +W T+ISGY      +E   LF++M      P++ T+  
Sbjct: 140 KGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAA 199

Query: 268 ---------------------------------NAMVSGYAQIGNLELALDFFKRMPQKN 294
                                            N++++ Y + GN+  A   F +   K+
Sbjct: 200 ALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS 259

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           +V+WNSMI+G   N     A+ +F  M++   +    +F+S++ + + + +L    Q+H 
Sbjct: 260 VVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHC 319

Query: 355 MVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
            V K   + D  I  AL+  Y++C A+++A  +F+E+  + NVVSW AMI G   +    
Sbjct: 320 SVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKE 379

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           EA++LF  M+   V P   T+  +L+A     ++     H + +   Y     +    +L
Sbjct: 380 EAVDLFSEMKRKGVRPNEFTYSVILTALP---VISPSEVHAQVVKTNYERSSTVG--TAL 434

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           +D   + G++E+A  +  G+  + D   W A+L  
Sbjct: 435 LDAYVKLGKVEEAAKVFSGID-DKDIVAWSAMLAG 468



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 201/430 (46%), Gaps = 69/430 (16%)

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----L 229
           R+  A  LFDK P             R+  S+ S++  +++ G    A+ +F  +    +
Sbjct: 42  RLYNAHNLFDKSP------------GRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGM 89

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH---------PDTLTWNAMVSGYAQIGNL 280
           E D   +++++     + D      LF +  H          D     ++V  Y +  N 
Sbjct: 90  EMDCSIFSSVLKVSATLCD-----ELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNF 144

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           +     F  M ++N+V+W ++I+G   N   +  + LF++MQ EG +P+  TF++ L + 
Sbjct: 145 KDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVL 204

Query: 341 SGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           +       G+Q+H +V K  +   +P++N+LI +Y +CG + +ARI+F++ + +K+VV+W
Sbjct: 205 AEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTE-VKSVVTW 263

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA-----------HAGLVE 448
           N+MI G A++G   EAL +F SMR   V  +  +F SV+  CA           H  +V+
Sbjct: 264 NSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVK 323

Query: 449 EG---RQHFKS-----------------MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
            G    Q+ ++                 +  E G    +  + +++    ++   E+A+D
Sbjct: 324 YGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVD 383

Query: 489 LIKGMP---FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           L   M      P++  +  +L A  V   +  ++V A+ +      +ST    L + Y  
Sbjct: 384 LFSEMKRKGVRPNEFTYSVILTALPV---ISPSEVHAQVVKTNYERSSTVGTALLDAYVK 440

Query: 546 VGRWDDANEV 555
           +G+ ++A +V
Sbjct: 441 LGKVEEAAKV 450


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 201/631 (31%), Positives = 318/631 (50%), Gaps = 80/631 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           ++S +V+   +  A  +F +M +RDV SWNV++ GY  +   G  +EA  L+      +I
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKA---GCFDEALNLYHRMLWAEI 194

Query: 55  MP---------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
            P                                 E D    N +I+ Y K G++  A  
Sbjct: 195 RPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARM 254

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVSGLIQN 135
           LF+ MP R+ +SWNAMISG+ +NG     +E F  M      P   + +  A    L+ N
Sbjct: 255 LFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDN 314

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
             L       V    + + G D +   N+LI  Y   GR+EEA  +F ++          
Sbjct: 315 ERLGRGVHGYV---VKSEFGGD-ISMNNSLIQMYSSLGRLEEAETVFSRME--------- 361

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMIS-----GYIHV 246
               +++VSW +MI           A E ++ M    +  D  +  +++S     G++ +
Sbjct: 362 ---SKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDL 418

Query: 247 -LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
            + + E +     + H   +  N+++  Y++   ++ AL+ F+ +  KN+VSW S+I G 
Sbjct: 419 GIRLHEIAIKTGLVSH--VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGL 476

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DV 364
             N     A+  F QM+ E  KP+  T  S+LS  + I  L  G +IH    +T +  D 
Sbjct: 477 RINNRSFEALLFFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDG 535

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            + NA++ MY RCG  V A   F   K  K+V +WN ++ G A  G A  A+ELF  M  
Sbjct: 536 FLPNAILDMYVRCGRKVPALNQFNSQK--KDVTAWNILLTGYAQQGQAKLAVELFDKMLE 593

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
            ++ P  ITFIS+L AC+ +G+V EG ++F  M N+Y + P ++H+A +VDI+GR G+L+
Sbjct: 594 LEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLD 653

Query: 485 DAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
           DA D I+ MP  PD A+WGALL ACR+H NVEL ++AA+ + + + ++   Y+LL N+YA
Sbjct: 654 DAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYA 713

Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
             G WD  ++VR LM+   +    G SWV+ 
Sbjct: 714 GCGNWDKVSKVRSLMRERGLSADPGCSWVEI 744



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 204/421 (48%), Gaps = 32/421 (7%)

Query: 139 DEAARV--LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
           DE +RV  LV     C      VR  N L+  + + G + +A  +F K+           
Sbjct: 114 DEGSRVYELVSSSKSCL----CVRLGNALLSMFVRFGNLLDAWYVFGKMS---------- 159

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEA 252
             +R++ SWN ++  YAKAG    A  ++ +ML      + +++ +++     V D+   
Sbjct: 160 --ERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARG 217

Query: 253 SNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             +   +       D    NA+++ Y + G++  A   F +MP+++ +SWN+MI+G   N
Sbjct: 218 KEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFEN 277

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPIN 367
                 ++LF  M+     PD  T +++ S    + +  LG  +H  V K+    D+ +N
Sbjct: 278 GGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMN 337

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           N+LI MY+  G + EA  +F  M+  K+VVSW AMI    SH    +A+E +K M    +
Sbjct: 338 NSLIQMYSSLGRLEEAETVFSRME-SKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGI 396

Query: 428 LPTYITFISVLSACAHAGLVEEG-RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           LP  IT +SVLSACA  G ++ G R H   +  + G+   +    SL+D+  +   +++A
Sbjct: 397 LPDEITLVSVLSACACIGHLDLGIRLH--EIAIKTGLVSHVIVSNSLIDMYSKCKCVDNA 454

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
           +++ + +  + +   W +L+   R++N    A +    + +    NS   + + +  A +
Sbjct: 455 LEVFRNISGK-NVVSWTSLILGLRINNRSFEALLFFRQMKESMKPNSVTLISVLSACARI 513

Query: 547 G 547
           G
Sbjct: 514 G 514


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 206/650 (31%), Positives = 315/650 (48%), Gaps = 118/650 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-----FLE--------- 46
           +I  Y +   ++ A+ LFD +PQ+D V WNVM++GY+ +  SG     FLE         
Sbjct: 99  LIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPN 158

Query: 47  -----------EARYLFDIMP-----------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                       +  + D+             E D    NT+++ Y+K   ++ A +LF+
Sbjct: 159 SVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFD 218

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
           ++P  ++VSWN +ISG++QNG +  A   F  M           +S  I+   +  A+  
Sbjct: 219 TLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGM-----------ISAGIKPDSITFAS-- 265

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
            + C +     E L   +   I GY  R  V     +F K                    
Sbjct: 266 FLPCVN-----ELLSLKHCKEIHGYIIRHAV--VLDVFLK-------------------- 298

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH--- 261
            +++I  Y K  DV  A++   Q    DT    TMISGY+     +EA   F  +     
Sbjct: 299 -SALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERM 357

Query: 262 -PDTLTWNAMVSGYAQIGNLEL-----------------------------------ALD 285
            P ++T++++   +A +  L L                                   A  
Sbjct: 358 KPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACR 417

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F R+ +K+ + WNSMI  C  N     AI LF QM +EG + D  + S  LS  + +  
Sbjct: 418 VFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPA 477

Query: 346 LHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           LH G +IH ++ K  +  D+   ++LI MYA+CG +  +R +F+ M+  KN VSWN++I 
Sbjct: 478 LHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQ-EKNEVSWNSIIS 536

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
              +HG   E L LF  M    + P ++TF+ ++SAC HAG V+EG +++  M  EYGI 
Sbjct: 537 AYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIP 596

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
            R+EH+A + D+ GR GRL +A + I  MPF PD  VWG LLGAC +H NVELA+VA++ 
Sbjct: 597 ARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKH 656

Query: 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           L  ++P NS  YVLL N+ A  G+W    +VR +MK   ++K  GYSW++
Sbjct: 657 LFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIE 706



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 148/640 (23%), Positives = 270/640 (42%), Gaps = 109/640 (17%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGFLEEARYL 51
           YV+   +  A+ LF  +      +WN MI G             Y+   G+G +   +Y 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAG-VSPDKYT 60

Query: 52  FDIMPERDC------------------------VTWNTVISGYAKTGEMEEALRLFNSMP 87
           F  + +  C                           +++I  YA+ G + +A  LF+++P
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNGELDEAAR 143
            ++ V WN M++G+++NGD  NAI+ F  M   +    S + + ++S       LD   +
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 144 ---VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
              + V CG   D         NTL+  Y +   ++ ARKLFD +P            + 
Sbjct: 181 LHGIAVGCGLELDS-----PVANTLLAMYSKCQCLQAARKLFDTLP------------QS 223

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLF 256
           ++VSWN +I  Y + G +  A  +F  M    ++ D+ ++ + +     +L ++    + 
Sbjct: 224 DLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIH 283

Query: 257 -VKMPHP---DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
              + H    D    +A++  Y +  ++E+A     +    + V   +MI+G   N   +
Sbjct: 284 GYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNK 343

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALI 371
            A++ F  +  E  KP   TFSSI    +G+  L+LG ++H  + KT + +   + +A++
Sbjct: 344 EALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAIL 403

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            MYA+CG +  A  +F  +   K+ + WN+MI  C+ +G   EA+ LF+ M         
Sbjct: 404 DMYAKCGRLDLACRVFNRIT-EKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDC 462

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMV------NEYGIEPRIEHFA-------------- 471
           ++    LSACA+   +  G++    M+      + Y     I+ +A              
Sbjct: 463 VSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDR 522

Query: 472 ----------SLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNVELA 518
                     S++   G HG L++ + L   M     +PD   +  ++ AC     V+  
Sbjct: 523 MQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVD-E 581

Query: 519 QVAAEALMKVE---PENSTPYVLLYNMYADVGRWDDANEV 555
            +    LM  E   P     Y  + +M+   GR  +A E 
Sbjct: 582 GIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFET 621


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 181/527 (34%), Positives = 282/527 (53%), Gaps = 62/527 (11%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +I  YAK G M +A  LF+ M  R+ +SWN M+S +  N D   A+E F RM      
Sbjct: 81  NELIGMYAKLGRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMES---- 136

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
                                        +G E  +  + +LI  Y + G  EEA +LF 
Sbjct: 137 -----------------------------EGMEPNLVTWTSLISSYARSGWHEEAMELF- 166

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSM---IMCYAKAGDVVSAREIFEQML----ERDTFSW 236
                     G +R K   VS  ++   I   A  G  V A+ I E  +    E  +F  
Sbjct: 167 ----------GLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVK 216

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK--- 293
           + +I  Y    D+  A NLF++M +    +WNA+++ +A+ G  + AL+ F ++ +    
Sbjct: 217 SALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDC 276

Query: 294 -----NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
                N+VSW+++I G  +    + A++LF +MQ      +  T S++LS+ + +  LHL
Sbjct: 277 PRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCAELAALHL 336

Query: 349 GMQIHQMVTKTV-IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G +IH  V + V + ++ + N L+ MYA+CG + E  +IFE+ +  K+++SWN+MI G  
Sbjct: 337 GREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTER-KDLISWNSMITGYG 395

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
            HG    ALE F  M      P  +TF++VLS+C+H+GLV EGR+ F  M+ +Y IEP++
Sbjct: 396 MHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQM 455

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
           EH+A +VD++GR G L +A +++K MP  P+  VWGALL +CR+HNN E+A+  A  L  
Sbjct: 456 EHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNNTEIAEETASHLFN 515

Query: 528 VEPENST-PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +    +T  Y+LL N+YA  GRW+D+  VR   K+  +KK  G SW+
Sbjct: 516 LSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPGQSWI 562



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 120/432 (27%), Positives = 204/432 (47%), Gaps = 37/432 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY-ISSRGSGFLEEARYLFDIMPERD 59
           +I  Y K   M  AR LFD M  R  +SWN M+S Y  +   +G LE  + +     E +
Sbjct: 83  LIGMYAKLGRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPN 142

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARN----------VVSWNAMISGFLQNGDVAN 109
            VTW ++IS YA++G  EEA+ LF  M  +           V+S  A +  F++    A 
Sbjct: 143 LVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVR----AK 198

Query: 110 AIEFFDRMPGRDSASL--SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV 167
            I  +    G +  S   SAL+    ++G+++ A  + ++  ++       + ++N LI 
Sbjct: 199 IIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKS------LASWNALIT 252

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            + + G  +EA ++F ++    +R     R + N+VSW+++I  +A  G    A E+F +
Sbjct: 253 SHAEAGLCDEALEIFSQL----ERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRR 308

Query: 228 MLERDTFSWNTMISGYIHV--------LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279
           M      +    IS  + +        L  E   ++   +   + L  N +V+ YA+ G 
Sbjct: 309 MQHAKILANAVTISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGC 368

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           L+     F++  +K+L+SWNSMI G   +     A++ F QM   G KPD  TF ++LS 
Sbjct: 369 LKEGHMIFEKTERKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSS 428

Query: 340 SSGIVDLHLGMQIH-QMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
            S    +H G ++  QM+ K  I P +     ++ +  R G + EA  I + M +  N  
Sbjct: 429 CSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNAC 488

Query: 398 SWNAMIGGCASH 409
            W A++  C  H
Sbjct: 489 VWGALLNSCRMH 500



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 183/419 (43%), Gaps = 75/419 (17%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F+ ++   N +I  YAK G +  AR +F++M  R   SWNTM+S Y    D   A  +F 
Sbjct: 73  FQSHLHVGNELIGMYAKLGRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQ 132

Query: 258 KMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL-VSWNSMIAGCETNKDYE 312
           +M      P+ +TW +++S YA+ G  E A++ F  M  K + VS  ++        D  
Sbjct: 133 RMESEGMEPNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICAD-- 190

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV-------------DLHLGMQIHQMVTKT 359
             +  F++ ++  E   +  F     + S ++             +L L M+   + +  
Sbjct: 191 --LGAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASW- 247

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEM-------KLLKNVVSWNAMIGGCASHGFA 412
                   NALIT +A  G   EA  IF ++       +L  NVVSW+A+I G AS G  
Sbjct: 248 --------NALITSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGRE 299

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ---HF------------KSM 457
            EALELF+ M+  K+L   +T  +VLS CA    +  GR+   H               +
Sbjct: 300 KEALELFRRMQHAKILANAVTISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGL 359

Query: 458 VNEYG----------IEPRIEH-----FASLVDIVGRHGRLEDAMDLIKGM---PFEPDK 499
           VN Y           I  + E      + S++   G HG   +A++    M    F+PD 
Sbjct: 360 VNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDG 419

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMK---VEPENSTPYVLLYNMYADVGRWDDANEV 555
             + A+L +C     V   +   + ++K   +EP+    Y  + ++    G   +A+E+
Sbjct: 420 VTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQME-HYACMVDLLGRAGLLREASEI 477



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 122/288 (42%), Gaps = 48/288 (16%)

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCG 378
           +M+  G   D  TF  ++   + +    LG  IH  V +      + + N LI MYA+ G
Sbjct: 32  RMRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLG 91

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
            + +AR +F+ M  +++ +SWN M+   A +     ALE+F+ M S  + P  +T+ S++
Sbjct: 92  RMRDARHLFDRMS-VRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLI 150

Query: 439 SACAHAGLVEEGRQHFKSM------------------------------VNEYGIEPRIE 468
           S+ A +G  EE  + F  M                              ++EY ++   E
Sbjct: 151 SSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFE 210

Query: 469 HF----ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
            +    ++L+ + G+HG +  A +L   M      A W AL+ +   H    L   A E 
Sbjct: 211 EYSFVKSALICVYGKHGDVNGAWNLFLEMK-NKSLASWNALITS---HAEAGLCDEALEI 266

Query: 525 LMKVEPENSTP--------YVLLYNMYADVGRWDDANEVRLLMKSNNI 564
             ++E     P        +  + + +A  GR  +A E+   M+   I
Sbjct: 267 FSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKI 314


>gi|302822699|ref|XP_002993006.1| hypothetical protein SELMODRAFT_136306 [Selaginella moellendorffii]
 gi|300139206|gb|EFJ05952.1| hypothetical protein SELMODRAFT_136306 [Selaginella moellendorffii]
          Length = 579

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 191/612 (31%), Positives = 297/612 (48%), Gaps = 130/612 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+S Y +   +  A+ LFD MP RDVVSW  ++  ++ S        A  + D MP+ + 
Sbjct: 29  MVSAYAQCGHVDLAKSLFDTMPHRDVVSWTALLHAFVGS----ITTMAHQVLDRMPQLNV 84

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           VTW T+I      G +  A  +F  MP RNVVSWN M++   Q GD A A   F+RMP  
Sbjct: 85  VTWTTMIQACVDQGHLGPAKDIFTRMPERNVVSWNTMVAANFQLGDFAGAKSTFNRMPKH 144

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  S +A+VS                                      +G+ G +E+A  
Sbjct: 145 DVVSWNAVVSAH-----------------------------------AHGREGMIEQALA 169

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
            F    V            R++V+WN+MI  +A  G +  A+E FE+M ERD  SWNTMI
Sbjct: 170 AFGSYHV------------RDLVTWNAMIQAFAHCGHLDQAKEYFERMPERDCVSWNTMI 217

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD-FFKRMPQ------- 292
             Y +   +EEA+ LF +MP P+ LTW +++  +AQ GN+  A   FF RMP+       
Sbjct: 218 QAYANDGCVEEANRLFRRMPEPNLLTWTSLLVAFAQNGNVAGAETIFFARMPEWDAVACN 277

Query: 293 ------------------------KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
                                   +++ SWNS++     N +YEGA ++F +M       
Sbjct: 278 AMVALYADAGCLARAAAMFDSLKERSMASWNSIVQAHAQNGEYEGAKEMFDRMPCH---- 333

Query: 329 DRHTFSSILS--MSSGIVDLHLGMQIHQMVTKTVIPDVP--------------------- 365
           D  +++++L+  + SG +DL     + ++      PDV                      
Sbjct: 334 DMVSWNTLLAAAIHSGSIDL-----VERLFDALPEPDVVSCNIVIVTFAEQGLIEKAERL 388

Query: 366 ----------INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH---GFA 412
                       NA++  YA+CG + +A+ ++ +M   +NVVSWNA++ G       G  
Sbjct: 389 FRRMSEWNIVTVNAMVAAYAQCGRMEQAKELWSKMPE-QNVVSWNALVAGYGQKRNFGHY 447

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
           ++A EL  SM    VLP  ++F+ +L+ACAH GL+ E R +  +M  ++G++P IEH+  
Sbjct: 448 SDAFELLHSMGLESVLPNDVSFLIILNACAHKGLLREARSYLAAMA-DHGLKPCIEHYCI 506

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
            +D+ G+ G+LE+A +L   MPF+ D   WG+L GAC +H +V     AA+   ++ P++
Sbjct: 507 FIDVFGKVGQLENASELAGCMPFQGDGVSWGSLAGACGLHRSVRHGAGAAKLACEMAPKS 566

Query: 533 STPYVLLYNMYA 544
           +  YV L N+YA
Sbjct: 567 AASYVSLANLYA 578



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 177/414 (42%), Gaps = 79/414 (19%)

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMV 271
           Y+  G +  A+ +FE + +    SWNTM+S Y     ++ A +LF  MPH D ++W A++
Sbjct: 2   YSSCGSIRDAQIVFEGICKPSICSWNTMVSAYAQCGHVDLAKSLFDTMPHRDVVSWTALL 61

Query: 272 SGYA--------QI----------------------GNLELALDFFKRMPQKNLVSWNSM 301
             +         Q+                      G+L  A D F RMP++N+VSWN+M
Sbjct: 62  HAFVGSITTMAHQVLDRMPQLNVVTWTTMIQACVDQGHLGPAKDIFTRMPERNVVSWNTM 121

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS----GIVDLHLGMQIHQMVT 357
           +A      D+ GA   F +M     K D  ++++++S  +    G+++  L         
Sbjct: 122 VAANFQLGDFAGAKSTFNRM----PKHDVVSWNAVVSAHAHGREGMIEQALA-----AFG 172

Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
              + D+   NA+I  +A CG + +A+  FE M   ++ VSWN MI   A+ G   EA  
Sbjct: 173 SYHVRDLVTWNAMIQAFAHCGHLDQAKEYFERMP-ERDCVSWNTMIQAYANDGCVEEANR 231

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI-------------- 463
           LF+ M      P  +T+ S+L A A  G V      F + + E+                
Sbjct: 232 LFRRMPE----PNLLTWTSLLVAFAQNGNVAGAETIFFARMPEWDAVACNAMVALYADAG 287

Query: 464 -------------EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
                        E  +  + S+V    ++G  E A ++   MP   D   W  LL A  
Sbjct: 288 CLARAAAMFDSLKERSMASWNSIVQAHAQNGEYEGAKEMFDRMPCH-DMVSWNTLLAAAI 346

Query: 511 VHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
              +++L +   +AL   EP+  +  +++   +A+ G  + A  +   M   NI
Sbjct: 347 HSGSIDLVERLFDAL--PEPDVVSCNIVIVT-FAEQGLIEKAERLFRRMSEWNI 397


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 175/499 (35%), Positives = 280/499 (56%), Gaps = 27/499 (5%)

Query: 87  PARNVVSWNAMI---SGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD 139
           P R V   + ++   + F    D+  A+   D M       D+ + S L+      G + 
Sbjct: 13  PLRYVADPSPLVNEFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQ 72

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           E  RV       C G E  +   NTL+  Y +   +EEA  LFD++P            +
Sbjct: 73  EGKRVHEHIF--CKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMP------------E 118

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREI---FEQMLERDTFSWNTMISGYIHVLDMEEASNLF 256
           RN+VSW +MI  Y+   +  + + +   F + +  + F++++++     + ++ +     
Sbjct: 119 RNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQLHCGI 178

Query: 257 VKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           +K     D    +A++  Y++  +L+ AL  F  MP ++LV WNS+I G   N D   A+
Sbjct: 179 IKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEAL 238

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYA 375
            LF +M+  G   D+ T +S+L   +G+  L LG Q+H  V K    D+ +NNALI MY 
Sbjct: 239 NLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK-FDQDLILNNALIDMYC 297

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +CG++ +A   F  M + K+V+SW+ M+ G A +G++ +ALELF+SM+     P YIT +
Sbjct: 298 KCGSLEDANSAFSRM-VEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVL 356

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
            VL AC+HAGLVE+G  +F+SM   +G++P  EH+  L+D++GR GRL++A+ LI  M  
Sbjct: 357 GVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMEC 416

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           EPD   W  LLGACRVH NV+LA  AA+ ++++EPE++  Y+LL N+YA+  RW+D  EV
Sbjct: 417 EPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEV 476

Query: 556 RLLMKSNNIKKPTGYSWVD 574
           R  M +  I+K  G SW++
Sbjct: 477 RKTMTNRGIRKTPGCSWIE 495



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 191/426 (44%), Gaps = 37/426 (8%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI---SSRGSGFLEEAR----YLFDI 54
            + +  + ++ +A +  D M +  V +  +  S  I   S+RG+  ++E +    ++F  
Sbjct: 27  FANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGA--VQEGKRVHEHIFCK 84

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF---LQNGDVANAI 111
             E      NT+++ Y K   +EEA  LF+ MP RNVVSW  MIS +   L +  +   I
Sbjct: 85  GYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLI 144

Query: 112 EFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
             F      +  + S+++        L +     + CG    G E  V   + LI  Y +
Sbjct: 145 LMFREGVRPNMFTYSSVLRACDGLPNLRQ-----LHCGIIKTGLESDVFVRSALIDVYSK 199

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
              ++ A  +FD++P             R++V WNS+I  +A+  D   A  +F++M   
Sbjct: 200 WSDLDNALGVFDEMPT------------RDLVVWNSIIGGFAQNSDGNEALNLFKRMKRA 247

Query: 232 DTFSWNTMISGYIH------VLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
              +    ++  +       +L++    ++ V     D +  NA++  Y + G+LE A  
Sbjct: 248 GFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDANS 307

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F RM +K+++SW++M+AG   N     A++LF  M+  G +P+  T   +L   S    
Sbjct: 308 AFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGL 367

Query: 346 LHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           +  G    + + K   V P       LI +  R G + EA  +  EM+   + V+W  ++
Sbjct: 368 VEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLL 427

Query: 404 GGCASH 409
           G C  H
Sbjct: 428 GACRVH 433



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 164/373 (43%), Gaps = 65/373 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-------- 52
           +++ YVK   + +A  LFDEMP+R+VVSW  MIS Y +      L+    +F        
Sbjct: 96  LLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNM 155

Query: 53  ----------DIMP--------------ERDCVTWNTVISGYAKTGEMEEALRLFNSMPA 88
                     D +P              E D    + +I  Y+K  +++ AL +F+ MP 
Sbjct: 156 FTYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPT 215

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDEAARV 144
           R++V WN++I GF QN D   A+  F RM       D A+L++++        L+   +V
Sbjct: 216 RDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQV 275

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
            V         +DL+   N LI  Y + G +E+A   F ++             +++++S
Sbjct: 276 HVHV---LKFDQDLI-LNNALIDMYCKCGSLEDANSAFSRM------------VEKDVIS 319

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI----HVLDMEEASNLFVKMP 260
           W++M+   A+ G    A E+FE M E  +      + G +    H   +E+    F  M 
Sbjct: 320 WSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMK 379

Query: 261 H-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
                 P    +  ++    + G L+ A+     M  + + V+W +++  C  +++ + A
Sbjct: 380 KLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLA 439

Query: 315 I---KLFIQMQVE 324
           I   K  I+++ E
Sbjct: 440 IYAAKKIIELEPE 452


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 201/631 (31%), Positives = 318/631 (50%), Gaps = 80/631 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           ++S +V+   +  A  +F +M +RDV SWNV++ GY  +   G  +EA  L+      +I
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKA---GCFDEALNLYHRMLWAEI 194

Query: 55  MP---------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
            P                                 E D    N +I+ Y K G++  A  
Sbjct: 195 RPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARM 254

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVSGLIQN 135
           LF+ MP R+ +SWNAMISG+ +NG     +E F  M      P   + +  A    L+ N
Sbjct: 255 LFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDN 314

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
             L       V    + + G D +   N+LI  Y   GR+EEA  +F ++          
Sbjct: 315 ERLGRGVHGYV---VKSEFGGD-ISMNNSLIQMYSSLGRLEEAETVFSRME--------- 361

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMIS-----GYIHV 246
               +++VSW +MI           A E ++ M    +  D  +  +++S     G++ +
Sbjct: 362 ---SKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDL 418

Query: 247 -LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
            + + E +     + H   +  N+++  Y++   ++ AL+ F+ +  KN+VSW S+I G 
Sbjct: 419 GIRLHEIAIKTGLVSH--VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGL 476

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DV 364
             N     A+  F QM+ E  KP+  T  S+LS  + I  L  G +IH    +T +  D 
Sbjct: 477 RINNRSFEALLFFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDG 535

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            + NA++ MY RCG  V A   F   K  K+V +WN ++ G A  G A  A+ELF  M  
Sbjct: 536 FLPNAILDMYVRCGRKVPALNQFNSQK--KDVTAWNILLTGYAQQGQAKLAVELFDKMLE 593

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
            ++ P  ITFIS+L AC+ +G+V EG ++F  M N+Y + P ++H+A +VDI+GR G+L+
Sbjct: 594 LEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLD 653

Query: 485 DAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
           DA D I+ MP  PD A+WGALL ACR+H NVEL ++AA+ + + + ++   Y+LL N+YA
Sbjct: 654 DAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYA 713

Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
             G WD  ++VR LM+   +    G SWV+ 
Sbjct: 714 GCGNWDKVSKVRSLMRERGLSADPGCSWVEI 744



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 204/421 (48%), Gaps = 32/421 (7%)

Query: 139 DEAARV--LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
           DE +RV  LV     C      VR  N L+  + + G + +A  +F K+           
Sbjct: 114 DEGSRVYELVSSSKSCL----CVRLGNALLSMFVRFGNLLDAWYVFGKMS---------- 159

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEA 252
             +R++ SWN ++  YAKAG    A  ++ +ML      + +++ +++     V D+   
Sbjct: 160 --ERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARG 217

Query: 253 SNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             +   +       D    NA+++ Y + G++  A   F +MP+++ +SWN+MI+G   N
Sbjct: 218 KEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFEN 277

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPIN 367
                 ++LF  M+     PD  T +++ S    + +  LG  +H  V K+    D+ +N
Sbjct: 278 GGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMN 337

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           N+LI MY+  G + EA  +F  M+  K+VVSW AMI    SH    +A+E +K M    +
Sbjct: 338 NSLIQMYSSLGRLEEAETVFSRME-SKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGI 396

Query: 428 LPTYITFISVLSACAHAGLVEEG-RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           LP  IT +SVLSACA  G ++ G R H   +  + G+   +    SL+D+  +   +++A
Sbjct: 397 LPDEITLVSVLSACACIGHLDLGIRLH--EIAIKTGLVSHVIVSNSLIDMYSKCKCVDNA 454

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
           +++ + +  + +   W +L+   R++N    A +    + +    NS   + + +  A +
Sbjct: 455 LEVFRNISGK-NVVSWTSLILGLRINNRSFEALLFFRQMKESMKPNSVTLISVLSACARI 513

Query: 547 G 547
           G
Sbjct: 514 G 514


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 184/619 (29%), Positives = 317/619 (51%), Gaps = 65/619 (10%)

Query: 5    YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DC 60
            YV   ++ + RK+FD++    V  WN+++S Y      G   E+  LF  M +     +C
Sbjct: 414  YVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKI---GNFRESVSLFKKMQKLGVVGNC 470

Query: 61   VTWNTVISGYAKTGEMEEALRLFNSMP----ARNVVSWNAMISGFLQNGDVANAIEFFDR 116
             T+  V+  +A  G+++E  R+   +       N    N++I+ + + G V +A   FD 
Sbjct: 471  YTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDE 530

Query: 117  MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            +   D  S +++++G + NG       + ++      G E  +    +++V +   G + 
Sbjct: 531  LSEPDVVSWNSMINGCVVNGFSGNGLEIFIQ--MLILGVEVDLTTLVSVLVAWANIGNLS 588

Query: 177  EARKLFDKIPVNCDRGEG-NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
              R L          G G    F   +V  N+++  Y+K G++  A E+F +M +    S
Sbjct: 589  LGRAL---------HGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVS 639

Query: 236  WNTMISGYIHVLDMEEASNLFVKMP----HPDTLT------------------------- 266
            W + I+ Y+      +A  LF +M      PD  T                         
Sbjct: 640  WTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVI 699

Query: 267  ----------WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
                       NA+++ YA+ G++E A   F ++P K++VSWN+MI G   N     A++
Sbjct: 700  KNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALE 759

Query: 317  LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYA 375
            LF+ MQ +  KPD  T + +L   +G+  L  G +IH  ++ +    D+ +  AL+ MYA
Sbjct: 760  LFLDMQKQF-KPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYA 818

Query: 376  RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
            +CG +V A+++F+ M   K+++SW  MI G   HGF  EA+  F  MR   + P   +F 
Sbjct: 819  KCGLLVLAQLLFD-MIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFS 877

Query: 436  SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
             +L+AC+H+GL+ EG + F SM NE G+EP++EH+A +VD++ R G L  A   I+ MP 
Sbjct: 878  VILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPI 937

Query: 496  EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
            +PD  +WG LL  CR+H++V+LA+  AE + ++EP+N+  YV+L N+YA+  +W++  ++
Sbjct: 938  KPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKL 997

Query: 556  RLLMKSNNIKKPTGYSWVD 574
            R  M+    K+  G SW++
Sbjct: 998  RKRMQKRGFKQNPGCSWIE 1016



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/471 (24%), Positives = 218/471 (46%), Gaps = 39/471 (8%)

Query: 49  RYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVA 108
           R++F   P R C+  +TV    + T       +           + NA I+ F + GD+ 
Sbjct: 305 RFIFFKQPRRTCLLHSTVCVSPSFTNTTHSVTQ-----------NQNAKINKFCEMGDLR 353

Query: 109 NAIEFFDRMPGRDSA--SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166
           NAIE   +    +    S  +++    +   L++  RV     S     ++ + A   L+
Sbjct: 354 NAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGA--KLV 411

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
             Y   G + + RK+FDKI                +  WN ++  YAK G+   +  +F+
Sbjct: 412 FMYVNCGDLVQGRKIFDKI------------MNDKVFLWNLLMSEYAKIGNFRESVSLFK 459

Query: 227 QMLER----DTFSWNTMISGYIHVLDMEEASNL---FVKMPH-PDTLTWNAMVSGYAQIG 278
           +M +     + +++  ++  +  +  ++E   +    +K+    +T   N++++ Y + G
Sbjct: 460 KMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFG 519

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
            +E A + F  + + ++VSWNSMI GC  N      +++FIQM + G + D  T  S+L 
Sbjct: 520 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLV 579

Query: 339 MSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
             + I +L LG  +H    K     +V  +N L+ MY++CG +  A  +F +M     +V
Sbjct: 580 AWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG-DTTIV 638

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SW + I      G  ++A+ LF  M+S  V P   T  S++ ACA +  +++GR    S 
Sbjct: 639 SWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD-VHSY 697

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           V + G+   +    +L+++  + G +E+A  +   +P + D   W  ++G 
Sbjct: 698 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMIGG 747



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 204/461 (44%), Gaps = 69/461 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG----------------- 43
           +I+ Y K   +  A  LFDE+ + DVVSWN MI+G + +  SG                 
Sbjct: 511 LIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVD 570

Query: 44  -----------------FLEEARYLFDIMP--ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                             L  A + F +      + V  NT++  Y+K G +  A  +F 
Sbjct: 571 LTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFV 630

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            M    +VSW + I+ +++ G  ++AI  FD M  +    D  +++++V     +  LD+
Sbjct: 631 KMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDK 690

Query: 141 AARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
              V   ++K G     G +L    N LI  Y + G VEEAR +F KIPV          
Sbjct: 691 GRDVHSYVIKNGM----GSNL-PVTNALINMYAKCGSVEEARLVFSKIPV---------- 735

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIF---EQMLERDTFSWNTMISGYIHVLDMEEA-- 252
             ++IVSWN+MI  Y++      A E+F   ++  + D  +   ++     +  +++   
Sbjct: 736 --KDIVSWNTMIGGYSQNSLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGRE 793

Query: 253 --SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
              ++  +    D     A+V  YA+ G L LA   F  +P+K+L+SW  MIAG   +  
Sbjct: 794 IHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGF 853

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINN 368
              AI  F +M++ G +PD  +FS IL+  S    L+ G +    +     V P +    
Sbjct: 854 GNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYA 913

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            ++ + AR G + +A    E M +  +   W  ++ GC  H
Sbjct: 914 CVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIH 954


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 197/632 (31%), Positives = 321/632 (50%), Gaps = 82/632 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           ++S Y     +  A  +F  M QRD V++N +I+G +S  G G  E+A  LF  M     
Sbjct: 312 LVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLING-LSQCGYG--EKAMELFKRMQLDGL 368

Query: 56  -PERD--------CVTWNTVISG-------------------------YAKTGEMEEALR 81
            P+ +        C +  T+ SG                         YAK  ++E AL 
Sbjct: 369 EPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALN 428

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNGE 137
            F      NVV WN M+  +    D+ N+   F +M   +      +  +++   I+ G+
Sbjct: 429 YFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGD 488

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAY--NTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           L+   ++   ++K   +       + AY  + LI  Y + G+++ A  +           
Sbjct: 489 LELGEQIHSQIIKTSFQ-------LNAYVCSVLIDMYAKLGKLDTAWDIL---------- 531

Query: 193 EGNVRFK-RNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVL 247
              +RF  +++VSW +MI  Y +      A   F QML+R    D       +S    + 
Sbjct: 532 ---IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQ 588

Query: 248 DMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
            ++E   +  +        D    NA+V+ Y++ GN+E A   F++    + ++WN++++
Sbjct: 589 ALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVS 648

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIP 362
           G + + + E A+++F +M  EG   +  TF S +  +S   ++  G Q+H ++TKT    
Sbjct: 649 GFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDS 708

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           +  + NA+I+MYA+CG+I +A+  F E+ + KN VSWNAMI   + HGF +EAL+ F  M
Sbjct: 709 ETEVCNAIISMYAKCGSISDAKKQFLELSM-KNEVSWNAMINAYSKHGFGSEALDSFDQM 767

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
               V P ++T + VLSAC+H GLV++G ++F+SM  EYG+ P+ EH+  +VD++ R G 
Sbjct: 768 IHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGL 827

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           L  A D I  MP EPD  VW  LL AC VH N+E+ + AA  L+++EPE+S  YVLL N+
Sbjct: 828 LSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNL 887

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           YA   +WD  +  R  MK   +KK  G SW++
Sbjct: 888 YAVCRKWDARDLTRQKMKEKGVKKEPGQSWIE 919



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 152/578 (26%), Positives = 252/578 (43%), Gaps = 78/578 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y+ + ++  A K+FDEMP+R + +WN MI    S   SG   +   LF  M   + 
Sbjct: 109 LLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSG---KVFCLFGRMVNENV 165

Query: 61  VTWNTVISGYAKTG----------EMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANA 110
                  SG  +            E   A  ++  +    +V  N +I  + +NG V  A
Sbjct: 166 TPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVC-NPLIDLYSRNGFVDRA 224

Query: 111 IEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG 170
              FD +  +D +S  A++SGL +N    EA R+   C     G      A+++++    
Sbjct: 225 RRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLF--CDMYVLGIMPTPYAFSSVLSACK 282

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
           +   +E   +L   +          + F  +    N+++  Y   G ++SA  IF  M +
Sbjct: 283 KIESLEIGEQLHGLVL--------KLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQ 334

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMV----------SG--- 273
           RD  ++NT+I+G       E+A  LF +M      PD+ T  ++V          SG   
Sbjct: 335 RDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQL 394

Query: 274 ----------------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
                                 YA+  ++E AL++F     +N+V WN M+       D 
Sbjct: 395 HAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDL 454

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNAL 370
             + ++F QMQ+E   P+++T+ SIL     + DL LG QIH  + KT    +  + + L
Sbjct: 455 RNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVL 514

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           I MYA+ G +  A  I       K+VVSW  MI G   + F  +AL  F+ M    +   
Sbjct: 515 IDMYAKLGKLDTAWDILIRFA-GKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSD 573

Query: 431 YITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
            +   + +SACA    ++EG+Q H ++ V+  G    +    +LV +  + G +E+A   
Sbjct: 574 EVGLTNAVSACAGLQALKEGQQIHAQACVS--GFSSDLPFQNALVTLYSKCGNIEEAY-- 629

Query: 490 IKGMPFEP----DKAVWGALL-GACRVHNNVELAQVAA 522
              + FE     D   W AL+ G  +  NN E  +V A
Sbjct: 630 ---LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFA 664


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 204/624 (32%), Positives = 307/624 (49%), Gaps = 67/624 (10%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC---- 60
           Y K  E   A+KLFD MP+R+VVSWN +ISGY      GF  E   LF      D     
Sbjct: 64  YCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQ---MGFYHEVMNLFKEARMSDLRLDK 120

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARN-----VVSWNAMISGFLQNGDVANAIEFFD 115
            T++  +S   +T ++    RL +++   +     V+  N++I  + + G +  A   F+
Sbjct: 121 FTFSNALSVCGRTLDLRLG-RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFE 179

Query: 116 RMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
                DS S ++L++G ++ G  DE  R+LVK                    G      +
Sbjct: 180 SADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSI 239

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
           E  + L       C    G      ++V   +++  YAK GD+  A +IF+ M + +   
Sbjct: 240 ECGKMLH-----GCAVKLG---LDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVM 291

Query: 236 WNTMISGYIHVLDM-----EEASNLFVKMP------------------------------ 260
           +N MI+G++ +  M      EA  LF +M                               
Sbjct: 292 YNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQI 351

Query: 261 ---------HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
                      D    NA+V  Y+  G++E  L  F   P+ ++VSW S+I G   N  +
Sbjct: 352 HAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQF 411

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNAL 370
           EG + LF ++   G KPD  T S +LS  + +  +  G QIH    KT I +   I N+ 
Sbjct: 412 EGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQ 471

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           I MYA+CG I  A + F+E K   ++VSW+ MI   A HG A EA++LF+ M+   + P 
Sbjct: 472 ICMYAKCGDIDSANMTFKETK-NPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPN 530

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
           +ITF+ VL AC+H GLVEEG ++F+ M  ++GI P ++H A +VD++GR GRL +A   I
Sbjct: 531 HITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFI 590

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
               FE D  +W +LL ACRVH   +  +  AE ++++EPE +  YVLLYN+Y D G   
Sbjct: 591 MDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQM 650

Query: 551 DANEVRLLMKSNNIKKPTGYSWVD 574
            A E+R LMK   +KK  G SW++
Sbjct: 651 PATEIRNLMKDRGVKKEPGLSWIE 674



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 148/502 (29%), Positives = 209/502 (41%), Gaps = 103/502 (20%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N ++  Y K GE + A +LF+ MP RNVVSWN++ISG+ Q G     +  F        A
Sbjct: 58  NNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKE------A 111

Query: 124 SLSALVSGLIQNGELDE--AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
            +S L         LD+   +  L  CG   D    L R  + LI   G  G V      
Sbjct: 112 RMSDL--------RLDKFTFSNALSVCGRTLD--LRLGRLIHALITVSGLGGPV------ 155

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
                                +  NS+I  Y K G +  AR +FE   E D+ SWN++I+
Sbjct: 156 ---------------------LLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIA 194

Query: 242 GYIHVLDMEEASNLFVKMPHP--------------------------------------- 262
           GY+ +   +E   L VKM                                          
Sbjct: 195 GYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGL 254

Query: 263 --DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG---CETNKD--YEGAI 315
             D +   A++  YA+IG+LE A   FK MP  N+V +N+MIAG    ET  D     A+
Sbjct: 255 DLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAM 314

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMY 374
            LF +MQ  G KP   TFSSIL   S I     G QIH  + K  +  D  I NAL+ +Y
Sbjct: 315 YLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELY 374

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           +  G+I +    F     L +VVSW ++I G   +G     L LF  +      P   T 
Sbjct: 375 SLSGSIEDGLKCFHSTPKL-DVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTI 433

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA----SLVDIVGRHGRLEDAMDLI 490
             +LSACA+   V+ G Q     ++ Y I+  I +F     S + +  + G ++ A    
Sbjct: 434 SIMLSACANLAAVKSGEQ-----IHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTF 488

Query: 491 KGMPFEPDKAVWGALLGACRVH 512
           K     PD   W  ++ +   H
Sbjct: 489 KETK-NPDIVSWSVMISSNAQH 509



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 107/470 (22%), Positives = 196/470 (41%), Gaps = 79/470 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----------------------- 37
           +I  Y K   +  AR +F+   + D VSWN +I+GY+                       
Sbjct: 161 LIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLN 220

Query: 38  --------SSRGSGF---LEEARYL----FDIMPERDCVTWNTVISGYAKTGEMEEALRL 82
                    + GS F   +E  + L      +  + D V    ++  YAK G++E+A ++
Sbjct: 221 SYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKI 280

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVAN-----AIEFFDRMPGRDSASLSALVSGLIQNGE 137
           F  MP  NVV +NAMI+GFLQ   +A+     A+  F  M  R         S +++   
Sbjct: 281 FKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACS 340

Query: 138 LDEAARVLVKCGSRCDG--------GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
             EA     +CG +            ++ +   N L+  Y   G +E+  K F   P   
Sbjct: 341 TIEA----FECGKQIHAQIFKYNLQSDEFIG--NALVELYSLSGSIEDGLKCFHSTP--- 391

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIH 245
                    K ++VSW S+I+ + + G       +F ++L    + D F+ + M+S   +
Sbjct: 392 ---------KLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACAN 442

Query: 246 VLDMEEASNLFVKMPHPD----TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           +  ++    +            T+  N+ +  YA+ G+++ A   FK     ++VSW+ M
Sbjct: 443 LAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVM 502

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-- 359
           I+    +   + A+ LF  M+  G  P+  TF  +L   S    +  G++  +++ K   
Sbjct: 503 ISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHG 562

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           + P+V  +  ++ +  R G + EA     +     + V W +++  C  H
Sbjct: 563 ITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVH 612



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 157/356 (44%), Gaps = 50/356 (14%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           FK  +   N+++  Y K G+   A+++F++M +R+  SWN++ISGY  +    E  NLF 
Sbjct: 50  FKPCLFLLNNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFK 109

Query: 258 KMPHPD---------------------------------------TLTWNAMVSGYAQIG 278
           +    D                                        L  N+++  Y + G
Sbjct: 110 EARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCG 169

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
            ++ A   F+   + + VSWNS+IAG       +  ++L ++M   G   + +   S L 
Sbjct: 170 RIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALK 229

Query: 339 M--SSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
              S+    +  G  +H    K  +  DV +  AL+  YA+ G + +A  IF+ M    N
Sbjct: 230 ACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMP-DPN 288

Query: 396 VVSWNAMIGG-----CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
           VV +NAMI G       +  FA EA+ LF  M+S  + P+  TF S+L AC+     E G
Sbjct: 289 VVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECG 348

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +Q   + + +Y ++       +LV++    G +ED +      P + D   W +L+
Sbjct: 349 KQ-IHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTP-KLDVVSWTSLI 402



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 140/313 (44%), Gaps = 41/313 (13%)

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERD----TFSWNTMISGYIHVLDMEEASNLFVK 258
           V++  ++ C  + G ++  +     M++       F  N ++  Y    + + A  LF +
Sbjct: 20  VTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDR 79

Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
           MP  + ++WN+++SGY Q+G     ++ FK     +L                       
Sbjct: 80  MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDL----------------------- 116

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARC 377
                   + D+ TFS+ LS+    +DL LG  IH ++T + +   V + N+LI MY +C
Sbjct: 117 --------RLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKC 168

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G I  AR++FE    L + VSWN++I G    G   E L L   M    +        S 
Sbjct: 169 GRIDWARLVFESADELDS-VSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSA 227

Query: 438 LSACAH--AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           L AC    +  +E G+      V + G++  +    +L+D   + G LEDA  + K MP 
Sbjct: 228 LKACGSNFSSSIECGKMLHGCAV-KLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMP- 285

Query: 496 EPDKAVWGALLGA 508
           +P+  ++ A++  
Sbjct: 286 DPNVVMYNAMIAG 298



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 5/199 (2%)

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIF 387
           D  T++ ++  S+    L  G   H  + KT   P + + N L+ MY +CG    A+ +F
Sbjct: 18  DSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLF 77

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
           + M   +NVVSWN++I G    GF  E + LFK  R   +     TF + LS C     +
Sbjct: 78  DRMP-KRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDL 136

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL- 506
             GR    +++   G+   +    SL+D+  + GR+ D   L+     E D   W +L+ 
Sbjct: 137 RLGRL-IHALITVSGLGGPVLLTNSLIDMYCKCGRI-DWARLVFESADELDSVSWNSLIA 194

Query: 507 GACRVHNNVELAQVAAEAL 525
           G  R+ +N E+ ++  + L
Sbjct: 195 GYVRIGSNDEMLRLLVKML 213


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 175/486 (36%), Positives = 286/486 (58%), Gaps = 28/486 (5%)

Query: 101 FLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR 160
           +++ G + +A + FDRM  +D  + SAL+ G  + G L+E  R+L +      G E  + 
Sbjct: 161 YMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEK--SGIEPNIV 218

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
           ++N ++ G+ + G  +EA  +F K+         ++ F  + V+ +S++     + ++  
Sbjct: 219 SWNGILSGFNRSGYHKEAVIMFQKMH--------HLGFCPDQVTVSSVLPSVGDSENLNM 270

Query: 221 AREIFEQMLERDTFSWNTMISGYIHVLDMEEAS-------NLFVKMPHPDTLTWNAMVSG 273
            R+I   ++++       +IS    +LDM   S        LF +    +T   NA ++G
Sbjct: 271 GRQIHGYVIKQGLLKDKCVISA---MLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITG 327

Query: 274 YAQIGNLELALDFFKRMPQK----NLVSWNSMIAGCETN-KDYEGAIKLFIQMQVEGEKP 328
            ++ G ++ AL+ F    ++    N+VSW S+IAGC  N KD E A++LF +MQV G KP
Sbjct: 328 LSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIE-ALELFREMQVAGVKP 386

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIF 387
           +R T  S+L     I  L  G   H    +  ++ DV + +ALI MYA+CG I  ++I+F
Sbjct: 387 NRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVF 446

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
             M   KN+V WN+++ G + HG A E + +F+S+   ++ P +I+F S+LSAC   GL 
Sbjct: 447 NMMPT-KNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLT 505

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           +EG ++F  M  EYGI+PR+EH++ +V+++GR G+L++A DLIK +PFEPD  VWGALL 
Sbjct: 506 DEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLN 565

Query: 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
           +CR+ NNV+LA++AA+ L  +EPEN   YVL+ N+YA  G W + + +R  M+S  +KK 
Sbjct: 566 SCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKN 625

Query: 568 TGYSWV 573
            G SW+
Sbjct: 626 PGCSWI 631



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 190/425 (44%), Gaps = 41/425 (9%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP----ERDC 60
           Y++   M  ARK+FD M ++DVV+ + ++ GY      G LEE   +   M     E + 
Sbjct: 161 YMRCGRMGDARKVFDRMSEKDVVTCSALLCGYAR---KGCLEEVVRILSEMEKSGIEPNI 217

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM------PARNVVSWNAMISGFLQNGDVANAIEFF 114
           V+WN ++SG+ ++G  +EA+ +F  M      P +  VS      G  +N ++   I  +
Sbjct: 218 VSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGY 277

Query: 115 DRMPG--RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQ 171
               G  +D   +SA++    ++G +    ++        D  E +     N  I G  +
Sbjct: 278 VIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLF-------DEFEMMETGVCNAYITGLSR 330

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML-- 229
            G V++A ++F              + + N+VSW S+I   A+ G  + A E+F +M   
Sbjct: 331 NGLVDKALEMFGLFKEQ--------KMELNVVSWTSIIAGCAQNGKDIEALELFREMQVA 382

Query: 230 ----ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH--PDTLTWNAMVSGYAQIGNLELA 283
                R T        G I  L    +++ F    H   D    +A++  YA+ G ++++
Sbjct: 383 GVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMS 442

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F  MP KNLV WNS++ G   +   +  + +F  +     KPD  +F+S+LS    +
Sbjct: 443 QIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQV 502

Query: 344 VDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
                G +   M+++   + P +   + ++ +  R G + EA  + +E+    +   W A
Sbjct: 503 GLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGA 562

Query: 402 MIGGC 406
           ++  C
Sbjct: 563 LLNSC 567



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 159/361 (44%), Gaps = 72/361 (19%)

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HP 262
           S+   Y + G +  AR++F++M E+D  + + ++ GY     +EE   +  +M      P
Sbjct: 156 SLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEP 215

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           + ++WN ++SG+ + G                                ++ A+ +F +M 
Sbjct: 216 NIVSWNGILSGFNRSGY-------------------------------HKEAVIMFQKMH 244

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAI- 380
             G  PD+ T SS+L       +L++G QIH  V K  ++ D  + +A++ MY + G + 
Sbjct: 245 HLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVY 304

Query: 381 ---------------------------------VEARIIFEEMKLLKNVVSWNAMIGGCA 407
                                            +E   +F+E K+  NVVSW ++I GCA
Sbjct: 305 GIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCA 364

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
            +G   EALELF+ M+   V P  +T  S+L AC +   +  GR      V  + ++  +
Sbjct: 365 QNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDD-V 423

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
              ++L+D+  + GR++ +  +   MP + +   W +L+    +H   +      E+LM+
Sbjct: 424 HVGSALIDMYAKCGRIKMSQIVFNMMPTK-NLVCWNSLMNGYSMHGKAKEVMSIFESLMR 482

Query: 528 V 528
            
Sbjct: 483 T 483



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 97/210 (46%), Gaps = 3/210 (1%)

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +++ Y+       A    + +P   + S++S+I      K +  +I +F +M   G  PD
Sbjct: 56  LIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPD 115

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFE 388
            H   ++  + + +     G QIH +   + +  D  +  +L  MY RCG + +AR +F+
Sbjct: 116 THVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFD 175

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
            M   K+VV+ +A++ G A  G   E + +   M    + P  +++  +LS    +G  +
Sbjct: 176 RMS-EKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHK 234

Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           E    F+ M +  G  P     +S++  VG
Sbjct: 235 EAVIMFQKM-HHLGFCPDQVTVSSVLPSVG 263



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 12/200 (6%)

Query: 1   MISGYVKRREMAKARKLFDEM------PQRDVVSWNVMISGYISSRGSGFLEEARYLFDI 54
           +I+G  +  +  +A +LF EM      P R  +   +   G I++ G G      +   +
Sbjct: 359 IIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHG-FAVRV 417

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
               D    + +I  YAK G ++ +  +FN MP +N+V WN++++G+  +G     +  F
Sbjct: 418 HLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIF 477

Query: 115 DR-MPGR---DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG 170
           +  M  R   D  S ++L+S   Q G  DE  +      S   G +  +  Y+ ++   G
Sbjct: 478 ESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF-NMMSEEYGIKPRLEHYSCMVNLLG 536

Query: 171 QRGRVEEARKLFDKIPVNCD 190
           + G+++EA  L  +IP   D
Sbjct: 537 RAGKLQEAYDLIKEIPFEPD 556


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 192/601 (31%), Positives = 312/601 (51%), Gaps = 51/601 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDV------VSWNVMISG-----YISSRGSGFLEEAR 49
           M+ G+ K  ++ KA K F  M   +V       ++ + + G      +     G L ++ 
Sbjct: 106 MLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165

Query: 50  YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVAN 109
           +  D+           + + YAK  ++ EA ++F+ MP R++VSWN +++G+ QNG    
Sbjct: 166 FSLDLF------AMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARM 219

Query: 110 AIEFFDRMPGRD-SASLSALVSGLIQNGELDEAARVLVKCGSRCDGG------EDLVRAY 162
           A+E  + M   +   S   +VS L     L      L++ G    G       + LV   
Sbjct: 220 ALEMVNLMCEENLKPSFITIVSVLPAVSALR-----LIRIGKEIHGYAMRAGFDSLVNIA 274

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
             L+  Y + G ++ AR LFD +             +RN+VSWNSMI  Y +  +   A 
Sbjct: 275 TALVDMYAKCGSLKTARLLFDGM------------LERNVVSWNSMIDAYVQNENPKEAM 322

Query: 223 EIFEQMLERDTFSWNTMISGYIHVL----DMEEA---SNLFVKMPHPDTLTW-NAMVSGY 274
            IF++ML+      +  + G +H      D+E       L V++     ++  N+++S Y
Sbjct: 323 VIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMY 382

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
            +   ++ A   F ++  + +VSWN+MI G   N     A+  F QMQ    KPD  T+ 
Sbjct: 383 CKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYV 442

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLL 393
           S+++  + +   H    IH +V +  +  +V +  AL+ MYA+CGAI+ AR+IF+ M   
Sbjct: 443 SVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSE- 501

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           ++V +WNAMI G  +HG    ALELF+ M+   + P  +TF+SV+SAC+H+GLVE G + 
Sbjct: 502 RHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKC 561

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
           F  M   Y IEP ++H+ ++VD++GR GRL +A D I  MP +P   V+GA+LGAC++H 
Sbjct: 562 FHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHK 621

Query: 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           NV  A+  AE L ++ PE+   +VLL N+Y     W+   +VR+ M    ++K  G S V
Sbjct: 622 NVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMV 681

Query: 574 D 574
           +
Sbjct: 682 E 682



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 138/516 (26%), Positives = 249/516 (48%), Gaps = 47/516 (9%)

Query: 21  MPQRDVVSWNVM--ISGYISSRGSGFLEEARYLFDIMPE----RDCVTWNTVISGYAKTG 74
           + QR+ +  NV    +  +  R S  L+E R++  ++ +    ++ +    ++S + + G
Sbjct: 25  LSQRNYIPANVYEHPAALLLERCSS-LKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYG 83

Query: 75  EMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA------SLSAL 128
            ++EA R+F  +  +  V +  M+ GF +  D+  A++FF RM  RD        + + L
Sbjct: 84  SVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRM--RDDEVEPVVYNFTYL 141

Query: 129 VSGLIQNGEL---DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           +       EL    E   +LVK G   D     + A   L   Y +  +V EARK+FD++
Sbjct: 142 LKVCGDEAELRVGKEIHGLLVKSGFSLD-----LFAMTGLENMYAKCRQVHEARKVFDRM 196

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-SWNTMIS--- 241
           P            +R++VSWN+++  Y++ G    A E+   M E +   S+ T++S   
Sbjct: 197 P------------ERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLP 244

Query: 242 --GYIHVLDMEEASNLFVKMPHPDTLT--WNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
               + ++ + +  + +      D+L     A+V  YA+ G+L+ A   F  M ++N+VS
Sbjct: 245 AVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVS 304

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WNSMI     N++ + A+ +F +M  EG KP   +    L   + + DL  G  IH++  
Sbjct: 305 WNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSV 364

Query: 358 KTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           +  +  +V + N+LI+MY +C  +  A  +F +++  + +VSWNAMI G A +G   EAL
Sbjct: 365 ELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQ-SRTIVSWNAMILGFAQNGRPIEAL 423

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
             F  M++  V P   T++SV++A A   +    +     +V    ++  +    +LVD+
Sbjct: 424 NYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKW-IHGVVMRNCLDKNVFVTTALVDM 482

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
             + G +  A  LI  M  E     W A++     H
Sbjct: 483 YAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTH 517



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 144/276 (52%), Gaps = 8/276 (2%)

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
           + + L    +VS + + G+++ A   F+ + +K  V + +M+ G     D + A+K F++
Sbjct: 66  YQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVR 125

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGA 379
           M+ +  +P  + F+ +L +     +L +G +IH ++ K+    D+     L  MYA+C  
Sbjct: 126 MRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQ 185

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           + EAR +F+ M   +++VSWN ++ G + +G A  ALE+   M    + P++IT +SVL 
Sbjct: 186 VHEARKVFDRMP-ERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLP 244

Query: 440 ACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           A +   L+  G++ H  +M    G +  +    +LVD+  + G L+ A  L  GM  E +
Sbjct: 245 AVSALRLIRIGKEIHGYAM--RAGFDSLVNIATALVDMYAKCGSLKTARLLFDGM-LERN 301

Query: 499 KAVWGALLGACRVHNNVELAQVAAEALMK--VEPEN 532
              W +++ A   + N + A V  + ++   V+P +
Sbjct: 302 VVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTD 337


>gi|449523327|ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 1090

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 197/656 (30%), Positives = 328/656 (50%), Gaps = 90/656 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSR-------------GSGFLEE 47
           ++S Y K   +  ARK+FD M +R++ +W+ MI  Y   +             G G L +
Sbjct: 120 LVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPD 179

Query: 48  ARYLFDIMPE-----RDCVT-------------------WNTVISGYAKTGEMEEALRLF 83
           A +LF  + +      D  T                    N++++ + K G++  A + F
Sbjct: 180 A-FLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFF 238

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVSGLIQNGE 137
            +M  R+ VSWN MI+G+ Q G+   A    D M      PG    + + +++   Q G+
Sbjct: 239 GNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGL--VTYNIMIASYSQLGD 296

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK------------- 184
            D    +  K  S   G    V  + ++I G+ Q  R+ +A   F K             
Sbjct: 297 CDLVIDLKKKMESV--GLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITI 354

Query: 185 ----------------IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
                           + ++C   +  +   R  +  NS+I  Y+K G + +AR +F+ +
Sbjct: 355 ASATSACASLKSLQNGLEIHCFAIKMGI--ARETLVGNSLIDMYSKCGKLEAARHVFDTI 412

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELAL 284
           LE+D ++WN+MI GY       +A  LF+++      P+ +TWNAM+SG  Q G+ + A+
Sbjct: 413 LEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAM 472

Query: 285 DFFKRMP-----QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           D F+ M      ++N  SWNS+IAG     +   A+ +F QMQ     P+  T  SIL  
Sbjct: 473 DLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPA 532

Query: 340 SSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            + ++      +IH  V +  +  ++ + N+L+  YA+ G I  +R +F  M   K++++
Sbjct: 533 CANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMS-SKDIIT 591

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN++I G   HG +  A +LF  MR+  + P   T  S++ A   AG+V++GR  F S+ 
Sbjct: 592 WNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSSIT 651

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            E+ I P ++H+ ++VD+ GR GRL DA++ I+ MP EPD ++W +LL ACR H N+ LA
Sbjct: 652 EEHQILPTLDHYLAMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTSLLTACRFHGNLNLA 711

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            +AA+ L ++EP+N   Y LL   YA  G+++   +VR L K + +KK T   WV+
Sbjct: 712 VLAAKRLHELEPDNHVIYRLLVQAYALYGKFEQTLKVRKLGKESAMKKCTAQCWVE 767



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 110/487 (22%), Positives = 186/487 (38%), Gaps = 90/487 (18%)

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
           +S L  NG L EA   +     R  G +     Y  L+      G +E  R+L  ++   
Sbjct: 52  LSYLCSNGLLREAITAIDSISKR--GSKLSTNTYINLLQTCIDVGSIELGRELHVRM--- 106

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                  +  + N      ++  YAK G +  AR++F+ M ER+ ++W+ MI  Y     
Sbjct: 107 ------GLVHRVNPFVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQR 160

Query: 249 MEEASNLFVKMPH----PDTLTW-----------------------------------NA 269
            +E   LF  M      PD   +                                   N+
Sbjct: 161 WKEVVELFFLMMGDGVLPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNS 220

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +++ + + G L LA  FF  M +++ VSWN MIAG     + + A +L   M  +G KP 
Sbjct: 221 ILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPG 280

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEE 389
             T++ +++  S + D                               C  +++ +   E 
Sbjct: 281 LVTYNIMIASYSQLGD-------------------------------CDLVIDLKKKMES 309

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           + L  +V +W +MI G +     ++AL+ FK M    V P  IT  S  SACA    ++ 
Sbjct: 310 VGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQN 369

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           G +       + GI        SL+D+  + G+LE A  +   +  E D   W +++G  
Sbjct: 370 GLE-IHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTI-LEKDVYTWNSMIGG- 426

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY----ADVGRWDDANEVRLLMKSNNIK 565
             +        A E  M++      P V+ +N         G  D A ++  +M+ +   
Sbjct: 427 --YCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIMEKDGGV 484

Query: 566 KPTGYSW 572
           K    SW
Sbjct: 485 KRNTASW 491


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 179/561 (31%), Positives = 305/561 (54%), Gaps = 36/561 (6%)

Query: 33  ISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNV- 91
           +  +  +   G  + AR LFD +PE +   WNT+I GY++    +  + L+  M  R V 
Sbjct: 77  VMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVK 136

Query: 92  ---VSWNAMISGFLQNGDVANAIEFFDRMPGR--------DSASLSALVSGLIQNGELDE 140
               ++  +  GF ++     A+E+  ++ G         +    +ALV   +  G+LD 
Sbjct: 137 PDRYTFPFLFKGFTRDI----ALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDT 192

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A  V   C  + D     V  +N +I  Y + G+ EE+R+LF  +         + +   
Sbjct: 193 ARGVFDVC-PKAD-----VITWNMIISAYNKVGKFEESRRLFLVME--------DKQVLP 238

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLF 256
             V+   ++   +K  D+ + +++   +    +E +    N MI  Y    +M+ A  +F
Sbjct: 239 TTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIF 298

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
             M + D ++W  +VSG+  +G +++A ++F +MP+K+ VSW +MI G   +  ++ A++
Sbjct: 299 RSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALE 358

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYA 375
           LF  MQ    KPD  T  S+L+  + +  L LG  I   + +  I  D+ + NALI MY 
Sbjct: 359 LFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYF 418

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +CG + +A  IF EM   ++  +W AMI G A +G   +AL++F +M    +LP  IT+I
Sbjct: 419 KCGDVDKAESIFREMSQ-RDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYI 477

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
            VLSAC H GLV++GR++F  M +++GIEP I H+  LVD++ R GRL++A ++I+ MP 
Sbjct: 478 GVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPI 537

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           + +  VWGALL  CRV+   ++A++  + ++++EP+N   YVLL N+YA   RW+D  E+
Sbjct: 538 KANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLREL 597

Query: 556 RLLMKSNNIKKPTGYSWVDFS 576
           R +M    IKK  G S ++ +
Sbjct: 598 RQMMMDKGIKKXPGCSLIEMN 618



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 155/348 (44%), Gaps = 56/348 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y+   ++  AR +FD  P+ DV++WN++IS Y      G  EE+R LF +M     
Sbjct: 180 LVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAY---NKVGKFEESRRLFLVMEDKQV 236

Query: 57  -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                                              E + V  N +I  YA  GEM+ AL 
Sbjct: 237 LPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALG 296

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           +F SM  R+++SW  ++SGF   G++  A  +FD+MP +D  S +A++ G I++    EA
Sbjct: 297 IFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEA 356

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +     +     ++      +++      G +E    L + I    DR     + K +
Sbjct: 357 LELFRNMQATNVKPDEFTMV--SVLTACAHLGALE----LGEWIRTYIDRN----KIKND 406

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           +   N++I  Y K GDV  A  IF +M +RD F+W  MI G       E+A ++F  M  
Sbjct: 407 LFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLK 466

Query: 262 ----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
               PD +T+  ++S     G ++    +F RM  ++ +  N    GC
Sbjct: 467 ASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGC 514



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 15/248 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI-SSRGSGFLEEARYLFDIMPERD 59
           ++SG+    E+  AR  FD+MP++D VSW  MI GYI S+R    LE  R +     + D
Sbjct: 312 IVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPD 371

Query: 60  CVTWNTVISGYAKTGEME--EALRLF--NSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
             T  +V++  A  G +E  E +R +   +    ++   NA+I  + + GDV  A   F 
Sbjct: 372 EFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFR 431

Query: 116 RMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
            M  RD  + +A++ GL  NG  ++A  +           +++   Y  ++      G V
Sbjct: 432 EMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEI--TYIGVLSACTHTGLV 489

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LERDTF 234
           ++ RK F  + +    G      + NI  +  ++   A+AG +  A E+ E M ++ ++ 
Sbjct: 490 DKGRKYF--LRMTSQHG-----IEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSI 542

Query: 235 SWNTMISG 242
            W  +++G
Sbjct: 543 VWGALLAG 550


>gi|359492597|ref|XP_002282781.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g04860-like [Vitis vinifera]
          Length = 724

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 191/616 (31%), Positives = 301/616 (48%), Gaps = 78/616 (12%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGY-------------ISSRGSGFLEEARYLFDIMP---- 56
           A+ LF+EMP+RDVVSWN +I GY             +     GF    R L  ++P    
Sbjct: 107 AQHLFEEMPRRDVVSWNALICGYSRNGYDYDALEVFVQMLREGFPPCQRTLVGLVPSCGR 166

Query: 57  -------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM 97
                              + DC   N + S YAK  +++ A  LF  +  +  VSWN M
Sbjct: 167 PDIIFQGKAIHGFGIKSGLDLDCRVKNALTSMYAKCADLQAAEVLFEEIFEKTEVSWNTM 226

Query: 98  ISGFLQNGDVANAIEFFDRMPG-RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
           I  + QNG    A+  F +M   R   +   ++S L  N  LD     ++K G   D   
Sbjct: 227 IGAYGQNGLFDEAMLVFKQMQKERVEVNYVTIISLLSANAHLDSTHCYVIKTGFATDA-- 284

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
                  +L+  Y   G +E A  L++ +P            +RN+VS  +MI  YA+ G
Sbjct: 285 ---SVITSLVCSYAGCGNIESAGLLYNLMP------------QRNLVSLTAMISGYAEKG 329

Query: 217 DVVSAREIFEQMLER----DTFSWNTMISGY-----------IHVLDMEEASNLFVKMPH 261
           ++    E F QML+     D  +  +++ G+           IH   ++           
Sbjct: 330 NMGLVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTG-------LC 382

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            D L  N ++S Y++ G++E     F  M +K L+SWNS+I+ C        A++LF QM
Sbjct: 383 ADCLVVNGLISMYSKFGDIETVFSLFSEMGEKQLISWNSVISACIQVGRTSDAMELFCQM 442

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAI 380
           ++ G  PD  T +S+L+  S +  L  G ++H  V +  +  +  +  AL+ MY +CG +
Sbjct: 443 RMYGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLETALVDMYIKCGRL 502

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
             A  +F+ +K    + +WN MI G    G    AL  +  M+   + P  ITF+ VLSA
Sbjct: 503 ESAERVFKSIK-EPCLATWNTMISGYGLSGHEHRALSCYSEMQEQGLKPDRITFLGVLSA 561

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C H GLV EG+++F+SM  ++G+ P ++H A +VD++ R G LE+A+  +K M  EPD A
Sbjct: 562 CTHGGLVWEGKRYFRSMREDFGMIPGLQHNACMVDLLSRAGFLEEAVIFVKNMEVEPDSA 621

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
           +WGALL +C +H  ++L +  A+ L+ ++  +   YVL+ N+YA  GRWDD   VR +MK
Sbjct: 622 IWGALLTSCCIHQELKLGECLAKRLLLLDYYSGGLYVLMSNLYASKGRWDDVARVRKMMK 681

Query: 561 SNNIKKPTGYSWVDFS 576
                  +G S ++ S
Sbjct: 682 DTGGDGSSGISLIEVS 697



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 140/443 (31%), Positives = 211/443 (47%), Gaps = 22/443 (4%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           Y K G +  A  LF  MP R+VVSWNA+I G+ +NG   +A+E F +M           +
Sbjct: 98  YGKLGCIYYAQHLFEEMPRRDVVSWNALICGYSRNGYDYDALEVFVQMLREGFPPCQRTL 157

Query: 130 SGLIQN-GELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPV 187
            GL+ + G  D   +     G     G DL  R  N L   Y +   ++ A  LF++I  
Sbjct: 158 VGLVPSCGRPDIIFQGKAIHGFGIKSGLDLDCRVKNALTSMYAKCADLQAAEVLFEEI-- 215

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML-ERDTFSWNTMISGYIHV 246
                     F++  VSWN+MI  Y + G    A  +F+QM  ER   ++ T+IS     
Sbjct: 216 ----------FEKTEVSWNTMIGAYGQNGLFDEAMLVFKQMQKERVEVNYVTIISLLSAN 265

Query: 247 LDMEEASNLFVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
             ++      +K     D     ++V  YA  GN+E A   +  MPQ+NLVS  +MI+G 
Sbjct: 266 AHLDSTHCYVIKTGFATDASVITSLVCSYAGCGNIESAGLLYNLMPQRNLVSLTAMISGY 325

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDV 364
               +    ++ F QM     KPD     SIL   +    +  G+ IH    KT +  D 
Sbjct: 326 AEKGNMGLVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTGLCADC 385

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            + N LI+MY++ G I     +F EM   K ++SWN++I  C   G  ++A+ELF  MR 
Sbjct: 386 LVVNGLISMYSKFGDIETVFSLFSEMG-EKQLISWNSVISACIQVGRTSDAMELFCQMRM 444

Query: 425 FKVLPTYITFISVLSACAHAGLVEEG-RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
           +   P  IT  S+L+ C+  G ++ G R H   + N   +E  +E   +LVD+  + GRL
Sbjct: 445 YGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLE--TALVDMYIKCGRL 502

Query: 484 EDAMDLIKGMPFEPDKAVWGALL 506
           E A  + K +  EP  A W  ++
Sbjct: 503 ESAERVFKSIK-EPCLATWNTMI 524



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 6/179 (3%)

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK-DYEGAIKLFIQMQVEGE 326
            A +  Y ++G +  A   F+ MP++++VSWN++I G   N  DY+ A+++F+QM  EG 
Sbjct: 92  TAFLDFYGKLGCIYYAQHLFEEMPRRDVVSWNALICGYSRNGYDYD-ALEVFVQMLREGF 150

Query: 327 KPDRHTFSSILSMSSGIVDLHL-GMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEAR 384
            P + T   ++  S G  D+   G  IH    K+ +  D  + NAL +MYA+C  +  A 
Sbjct: 151 PPCQRTLVGLVP-SCGRPDIIFQGKAIHGFGIKSGLDLDCRVKNALTSMYAKCADLQAAE 209

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
           ++FEE+   K  VSWN MIG    +G   EA+ +FK M+  +V   Y+T IS+LSA AH
Sbjct: 210 VLFEEI-FEKTEVSWNTMIGAYGQNGLFDEAMLVFKQMQKERVEVNYVTIISLLSANAH 267



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 172/444 (38%), Gaps = 104/444 (23%)

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------------ 259
           Y K G +  A+ +FE+M  RD  SWN +I GY       +A  +FV+M            
Sbjct: 98  YGKLGCIYYAQHLFEEMPRRDVVSWNALICGYSRNGYDYDALEVFVQMLREGFPPCQRTL 157

Query: 260 -------PHPDTL--------------------TWNAMVSGYAQIGNLELALDFFKRMPQ 292
                    PD +                      NA+ S YA+  +L+ A   F+ + +
Sbjct: 158 VGLVPSCGRPDIIFQGKAIHGFGIKSGLDLDCRVKNALTSMYAKCADLQAAEVLFEEIFE 217

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K  VSWN+MI     N  ++ A+ +F QMQ E  + +  T  S+LS ++     HL    
Sbjct: 218 KTEVSWNTMIGAYGQNGLFDEAMLVFKQMQKERVEVNYVTIISLLSANA-----HLD-ST 271

Query: 353 HQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H  V KT    D  +  +L+  YA CG I  A +++  M   +N+VS  AMI G A  G 
Sbjct: 272 HCYVIKTGFATDASVITSLVCSYAGCGNIESAGLLYNLMP-QRNLVSLTAMISGYAEKGN 330

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR------------------QH 453
               +E F  M   K+ P  +  +S+L        +  G                     
Sbjct: 331 MGLVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTGLCADCLVVNG 390

Query: 454 FKSMVNEYG-IEPRIEHFA-----------SLVDIVGRHGRLEDAMDLIKGMPF---EPD 498
             SM +++G IE     F+           S++    + GR  DAM+L   M      PD
Sbjct: 391 LISMYSKFGDIETVFSLFSEMGEKQLISWNSVISACIQVGRTSDAMELFCQMRMYGHSPD 450

Query: 499 KAVWGALLGAC----------RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
                +LL  C          R+HN V    +  E  ++           L +MY   GR
Sbjct: 451 AITIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLETA---------LVDMYIKCGR 501

Query: 549 WDDANEVRLLMKSNNIKKPTGYSW 572
            + A  V       +IK+P   +W
Sbjct: 502 LESAERVF-----KSIKEPCLATW 520


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 179/558 (32%), Positives = 304/558 (54%), Gaps = 36/558 (6%)

Query: 36  YISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNV---- 91
           +  +   G  + AR LFD +PE +   WNT+I GY++    +  + L+  M  R V    
Sbjct: 59  FCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDR 118

Query: 92  VSWNAMISGFLQNGDVANAIEFFDRMPGR--------DSASLSALVSGLIQNGELDEAAR 143
            ++  +  GF ++     A+E+  ++ G         +    +ALV   +  G+LD A  
Sbjct: 119 YTFPFLFKGFTRDI----ALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARG 174

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
           V   C  + D     V  +N +I  Y + G+ EE+R+LF  +         + +     V
Sbjct: 175 VFDVC-PKAD-----VITWNMIISAYNKVGKFEESRRLFLVME--------DKQVLPTTV 220

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
           +   ++   +K  D+ + +++   +    +E +    N MI  Y    +M+ A  +F  M
Sbjct: 221 TLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSM 280

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
            + D ++W  +VSG+  +G +++A ++F +MP+K+ VSW +MI G   +  ++ A++LF 
Sbjct: 281 NNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFR 340

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCG 378
            MQ    KPD  T  S+L+  + +  L LG  I   + +  I  D+ + NALI MY +CG
Sbjct: 341 NMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCG 400

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
            + +A  IF EM   ++  +W AMI G A +G   +AL++F +M    +LP  IT+I VL
Sbjct: 401 DVDKAESIFREMSQ-RDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVL 459

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           SAC H GLV++GR++F  M +++GIEP I H+  LVD++ R GRL++A ++I+ MP + +
Sbjct: 460 SACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKAN 519

Query: 499 KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558
             VWGALL  CRV+   ++A++  + ++++EP+N   YVLL N+YA   RW+D  E+R +
Sbjct: 520 SIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQM 579

Query: 559 MKSNNIKKPTGYSWVDFS 576
           M    IKK  G S ++ +
Sbjct: 580 MMDKGIKKTPGCSLIEMN 597



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 155/348 (44%), Gaps = 56/348 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y+   ++  AR +FD  P+ DV++WN++IS Y      G  EE+R LF +M     
Sbjct: 159 LVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAY---NKVGKFEESRRLFLVMEDKQV 215

Query: 57  -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                                              E + V  N +I  YA  GEM+ AL 
Sbjct: 216 LPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALG 275

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           +F SM  R+++SW  ++SGF   G++  A  +FD+MP +D  S +A++ G I++    EA
Sbjct: 276 IFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEA 335

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +     +     ++      +++      G +E    L + I    DR     + K +
Sbjct: 336 LELFRNMQATNVKPDEFTMV--SVLTACAHLGALE----LGEWIRTYIDRN----KIKND 385

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           +   N++I  Y K GDV  A  IF +M +RD F+W  MI G       E+A ++F  M  
Sbjct: 386 LFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLK 445

Query: 262 ----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
               PD +T+  ++S     G ++    +F RM  ++ +  N    GC
Sbjct: 446 ASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGC 493



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 15/248 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI-SSRGSGFLEEARYLFDIMPERD 59
           ++SG+    E+  AR  FD+MP++D VSW  MI GYI S+R    LE  R +     + D
Sbjct: 291 IVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPD 350

Query: 60  CVTWNTVISGYAKTGEME--EALRLF--NSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
             T  +V++  A  G +E  E +R +   +    ++   NA+I  + + GDV  A   F 
Sbjct: 351 EFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFR 410

Query: 116 RMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
            M  RD  + +A++ GL  NG  ++A  +           +++   Y  ++      G V
Sbjct: 411 EMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEI--TYIGVLSACTHTGLV 468

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LERDTF 234
           ++ RK F  + +    G      + NI  +  ++   A+AG +  A E+ E M ++ ++ 
Sbjct: 469 DKGRKYF--LRMTSQHG-----IEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSI 521

Query: 235 SWNTMISG 242
            W  +++G
Sbjct: 522 VWGALLAG 529


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 188/603 (31%), Positives = 312/603 (51%), Gaps = 49/603 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +++GY K     +A +LF+++     +  +      +     G     RY+   M     
Sbjct: 76  LMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGL---HRYVLGKMIHTCL 132

Query: 59  -------DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAI 111
                  D V  ++++  Y K    E+A+ LFN MP ++V  WN +IS + Q+G+  +A+
Sbjct: 133 IKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDAL 192

Query: 112 EFFDRMP----GRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNT 164
           E+F  M       +S +++  +S   +  +L+    +   L+  G   D         + 
Sbjct: 193 EYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDS-----FISSA 247

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           L+  YG+ G +E A ++F+++P            K+ +V+WNSMI  Y   GD++S  ++
Sbjct: 248 LVDMYGKCGHLEMAIEIFEQMP------------KKTVVAWNSMISGYGLKGDIISCIQL 295

Query: 225 FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH---------PDTLTWNAMVSGYA 275
           F++M         T +S  I V     A  L  K  H         PD    ++++  Y 
Sbjct: 296 FKRMYNEGVKPTLTTLSSLIMVCS-RSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYF 354

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           + G +ELA   FK +P+  +VSWN MI+G         A+ LF +M+    + D  TF+S
Sbjct: 355 KCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTS 414

Query: 336 ILSMSSGIVDLHLGMQIHQMVT-KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +L+  S +  L  G +IH ++  K +  +  +  AL+ MYA+CGA+ EA  +F+ +   +
Sbjct: 415 VLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPK-R 473

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           ++VSW +MI    SHG A  ALELF  M    V P  + F+++LSAC HAGLV+EG  +F
Sbjct: 474 DLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYF 533

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP-FEPDKAVWGALLGACRVHN 513
             M+N YGI PR+EH++ L+D++GR GRL +A ++++  P    D  +   L  ACR+H 
Sbjct: 534 NQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHR 593

Query: 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           N++L    A  L+  +P++S+ Y+LL NMYA   +WD+   VR  MK   +KK  G SW+
Sbjct: 594 NIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWI 653

Query: 574 DFS 576
           + +
Sbjct: 654 EIN 656



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 139/501 (27%), Positives = 247/501 (49%), Gaps = 49/501 (9%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-WNAMISGFLQNGDVANAIEFFD 115
           + D     T+I+ Y      + A  +F++M     +S WN +++G+ +N     A+E F+
Sbjct: 35  QNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFE 94

Query: 116 RMPGR-----DSASLSAL---VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV 167
           ++        DS +  ++     GL +          L+K G   D     +   ++L+ 
Sbjct: 95  KLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMD-----IVVGSSLVG 149

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            YG+    E+A  LF+++P            ++++  WN++I CY ++G+   A E F  
Sbjct: 150 MYGKCNAFEKAIWLFNEMP------------EKDVACWNTVISCYYQSGNFKDALEYFGL 197

Query: 228 M----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGN 279
           M     E ++ +  T IS    +LD+     +  ++ +     D+   +A+V  Y + G+
Sbjct: 198 MRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGH 257

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           LE+A++ F++MP+K +V+WNSMI+G     D    I+LF +M  EG KP   T SS++ +
Sbjct: 258 LEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMV 317

Query: 340 SSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            S    L  G  +H    +  I PDV +N++L+ +Y +CG +  A  IF+ +   K VVS
Sbjct: 318 CSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSK-VVS 376

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN MI G  + G   EAL LF  MR   V    ITF SVL+AC+    +E+G++     +
Sbjct: 377 WNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKE-----I 431

Query: 459 NEYGIEPRIEH----FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           +   IE ++++      +L+D+  + G +++A  + K +P + D   W +++ A   H +
Sbjct: 432 HNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITAYGSHGH 490

Query: 515 VELAQVAAEALMKVEPENSTP 535
              A  A E   ++   N  P
Sbjct: 491 ---AYGALELFAEMLQSNVKP 508



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 4/165 (2%)

Query: 346 LHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           L  G  IHQ +VT  +  D+ +   LI  Y  C     A+ +F+ M+    +  WN ++ 
Sbjct: 19  LKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGLMA 78

Query: 405 GCASHGFATEALELFKSMRSFKVL-PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
           G   +    EALELF+ +  +  L P   T+ SV  AC        G+     ++   G+
Sbjct: 79  GYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKT-GL 137

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
              I   +SLV + G+    E A+ L   MP E D A W  ++  
Sbjct: 138 MMDIVVGSSLVGMYGKCNAFEKAIWLFNEMP-EKDVACWNTVISC 181


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 174/502 (34%), Positives = 286/502 (56%), Gaps = 44/502 (8%)

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA----SLSALVSGLIQNGE 137
           +FN + + + V WN  I G+ +N  V+  +  F RM   D+     +  +L+    +   
Sbjct: 79  VFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCG 138

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           + E        V+CG    GG+  V    +LI  YG+ G +  ARK+FD++      GE 
Sbjct: 139 VKEGVAFHGSAVRCGV---GGDVFV--MTSLIDLYGKCGEILCARKVFDEM------GE- 186

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASN 254
                RN+VSW +MI  YA   D+V AR++F++M E++  SWN +ISGY+   D+  A  
Sbjct: 187 -----RNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARK 241

Query: 255 LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
           +F +MPH + +++  M+ GYA+ G++  A   F+  P++++V+W+++I            
Sbjct: 242 MFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALI------------ 289

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP---INNALI 371
            ++  +  V   KPD     S++S  S +  L L   +   V K+ I DV    +  ALI
Sbjct: 290 FRVCAEWNV---KPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSI-DVHRAHVIAALI 345

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            M A+CG++  A  +FEEM   ++++S+ +M+ G + HG   +A+ LF  M +  + P  
Sbjct: 346 DMNAKCGSMDRATKLFEEMPK-RDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDD 404

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           + F  +L+AC+ AGLV+EG  +F+SM  +Y I P  +H+A +VD++GR GRL++A +L+K
Sbjct: 405 VAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLK 464

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
            MP EP    WGALLGAC++H ++EL +V A+ L ++EP+N+  YVLL N+YA   +W D
Sbjct: 465 SMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLD 524

Query: 552 ANEVRLLMKSNNIKKPTGYSWV 573
            + +R  M+   I+K  G SW+
Sbjct: 525 VSLLRNKMRERGIRKIPGCSWI 546



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 169/343 (49%), Gaps = 48/343 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K  E+  ARK+FDEM +R+VVSW  MI+GY S      L EAR LFD MPE++ 
Sbjct: 164 LIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSD---LVEARKLFDEMPEKNA 220

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN +ISGY K G++  A ++F+ MP RNVVS+  MI G+ ++GD+A+A   F+  P R
Sbjct: 221 VSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPER 280

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCD-----------------GGEDLVRAY- 162
           D  + SAL+  +     +     ++V   S C                     D+ RA+ 
Sbjct: 281 DVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHV 340

Query: 163 -NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
              LI    + G ++ A KLF+++P            KR+++S+ SM+   +  G    A
Sbjct: 341 IAALIDMNAKCGSMDRATKLFEEMP------------KRDLISYCSMMQGLSIHGCGPQA 388

Query: 222 REIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKM-------PHPDTLTWNAM 270
             +F +ML      D  ++  +++       ++E    F  M       P PD   +  M
Sbjct: 389 VSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPD--HYACM 446

Query: 271 VSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
           V    + G L+ A +  K MP + +  +W +++  C+ + D E
Sbjct: 447 VDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIE 489



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 175/358 (48%), Gaps = 36/358 (10%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D     ++I  Y K GE+  A ++F+ M  RNVVSW AMI+G+    D+  A + FD MP
Sbjct: 157 DVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP 216

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
            +++ S +A++SG ++ G+L  A ++  +   R       V ++ T+I GY + G +  A
Sbjct: 217 EKNAVSWNAIISGYVKCGDLRSARKMFDEMPHR------NVVSFTTMIDGYAKSGDMASA 270

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT 238
           R +F++ P            +R++V+W+++I            R   E  ++ D F   +
Sbjct: 271 RFVFEEAP------------ERDVVAWSALIF-----------RVCAEWNVKPDEFIMVS 307

Query: 239 MISGYIHVLDMEEAS--NLFVKMPHPDTLTWN---AMVSGYAQIGNLELALDFFKRMPQK 293
           ++S    +  +E A   + +V+    D    +   A++   A+ G+++ A   F+ MP++
Sbjct: 308 LMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKR 367

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQ 351
           +L+S+ SM+ G   +     A+ LF +M  EG  PD   F+ IL+  S  G+VD      
Sbjct: 368 DLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYF 427

Query: 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
                  +++P       ++ +  R G + EA  + + M +  +  +W A++G C  H
Sbjct: 428 ESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLH 485



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 149/346 (43%), Gaps = 33/346 (9%)

Query: 233 TFSWNTMISGYIHVLDMEEA-SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           T S +T++        +E+  + +  K  H D    +  ++    + N       F  + 
Sbjct: 25  TSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFNGVS 84

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
             + V WN+ I G   N      + LFI+M+     PD+ T+ S++   S +  +  G+ 
Sbjct: 85  SPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVA 144

Query: 352 IHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            H    +  V  DV +  +LI +Y +CG I+ AR +F+EM   +NVVSW AMI G AS  
Sbjct: 145 FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMG-ERNVVSWTAMIAGYASFS 203

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
              EA +LF  M         +++ +++S     G +   R+ F  M +       +  F
Sbjct: 204 DLVEARKLFDEMPE----KNAVSWNAIISGYVKCGDLRSARKMFDEMPHR-----NVVSF 254

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMP-------------------FEPDKAVWGALLGACRV 511
            +++D   + G +  A  + +  P                    +PD+ +  +L+ AC  
Sbjct: 255 TTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQ 314

Query: 512 HNNVELAQVAAEALMKVEPENSTPYVL--LYNMYADVGRWDDANEV 555
             ++ELA+   + + K   +    +V+  L +M A  G  D A ++
Sbjct: 315 MGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKL 360


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 181/529 (34%), Positives = 278/529 (52%), Gaps = 28/529 (5%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
            +D      +I+ ++    +  A+ +FN +P  NV  +N++I     N            
Sbjct: 50  HQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHN------------ 97

Query: 117 MPGRDSASLSALVSGLIQNGELDE--AARVLVKCGSRCDGGEDL--VRAYNTLIVGYGQR 172
                S   +A    + +NG   +      L+K    C G   L  VR  +  +  +G  
Sbjct: 98  -TSHPSLPFNAFFQ-MQKNGLFPDNFTYPFLLKA---CTGPSSLPLVRMIHAHVEKFGFY 152

Query: 173 GRVEEARKLFDKIPVNCDRG-EGNVRF-----KRNIVSWNSMIMCYAKAGDVVSAREIFE 226
           G +     L D        G +G +       +R++V+WNSMI    + G++  A ++F+
Sbjct: 153 GDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFD 212

Query: 227 QMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
           +M ERD  SWNTM+ GY    +M+ A  LF +MP  + ++W+ MV GY++ G++++A   
Sbjct: 213 EMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVL 272

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F R P KN+V W ++IAG         A +L+ +M+  G +PD     SIL+  +    L
Sbjct: 273 FDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGML 332

Query: 347 HLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
            LG +IH  + +        + NA I MYA+CG +  A  +F  M   K+VVSWN+MI G
Sbjct: 333 GLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQG 392

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
            A HG   +ALELF  M      P   TF+ +L AC HAGLV EGR++F SM   YGI P
Sbjct: 393 FAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVP 452

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
           ++EH+  ++D++GR G L++A  L++ MP EP+  + G LL ACR+HN+V+ A+   E L
Sbjct: 453 QVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQL 512

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            KVEP +   Y LL N+YA  G W +   VRL M +   +KP+G S ++
Sbjct: 513 FKVEPTDPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPSGASSIE 561



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 172/362 (47%), Gaps = 36/362 (9%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           A  LF  M +RDVV+WN MI G +     G LE A  LFD MPERD V+WNT++ GYAK 
Sbjct: 176 AMSLFLAMKERDVVTWNSMIGGLVRC---GELEGACKLFDEMPERDMVSWNTMLDGYAKA 232

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI 133
           GEM+ A  LF  MP RN+VSW+ M+ G+ + GD+  A   FDR P ++    + +++G  
Sbjct: 233 GEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYA 292

Query: 134 QNGELDEAARVLVK---CGSRCDGG---EDLVRAYNTLIVGYGQRGRVEEARKLFDK--- 184
           + G + EA  +  K    G R D G     L     + ++G G+R      R  F     
Sbjct: 293 EKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTK 352

Query: 185 -----IPVNCDRGEGNVRF--------KRNIVSWNSMIMCYAKAGDVVSAREIFEQML-- 229
                I +    G  +  F        K+++VSWNSMI  +A  G    A E+F +M+  
Sbjct: 353 VLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPE 412

Query: 230 --ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLEL 282
             E DT+++  ++    H   + E    F  M       P    +  M+    + G+L+ 
Sbjct: 413 GFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKE 472

Query: 283 ALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMS 340
           A    + MP + N +   +++  C  + D + A  +  Q+ +VE   P  ++  S +   
Sbjct: 473 AFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQ 532

Query: 341 SG 342
           +G
Sbjct: 533 AG 534



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 182/392 (46%), Gaps = 49/392 (12%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+   N +I  Y S  GS  L+ A  LF  M ERD VTWN++I G  + GE+E A +LF+
Sbjct: 154 DIFVPNSLIDSY-SRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFD 212

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            MP R++VSWN M+ G+ + G++  A E F+RMP R+  S S +V G  + G++D  ARV
Sbjct: 213 EMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMD-MARV 271

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV-------- 196
           L     RC      V  + T+I GY ++G V EA +L+ K+     R +           
Sbjct: 272 LF---DRCPAKN--VVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAAC 326

Query: 197 -------------------RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML-ERDTFSW 236
                              RF+      N+ I  YAK G + +A ++F  M+ ++D  SW
Sbjct: 327 AESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSW 386

Query: 237 NTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           N+MI G+      E+A  LF +M      PDT T+  ++      G +     +F  M +
Sbjct: 387 NSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEK 446

Query: 293 KNLVSWNSMIAGCETNKDYEG-----AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
              +       GC  +    G     A  L   M +E   P+     ++L+      D+ 
Sbjct: 447 VYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPME---PNAIILGTLLNACRMHNDVD 503

Query: 348 LGMQIHQMVTKTVIPDVPINNALIT-MYARCG 378
               + + + K V P  P N +L++ +YA+ G
Sbjct: 504 FARAVCEQLFK-VEPTDPGNYSLLSNIYAQAG 534



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 42/251 (16%)

Query: 214 KAGDVVSAREIFEQMLE----RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA 269
           K  ++ S  +I  Q+L+    +D F    +I+ +     +  A N+F  +PHP+   +N+
Sbjct: 30  KCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNS 89

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           ++  +A       +L F                               F QMQ  G  PD
Sbjct: 90  IIRAHAH-NTSHPSLPF-----------------------------NAFFQMQKNGLFPD 119

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGA--IVEARII 386
             T+  +L   +G   L L   IH  V K     D+ + N+LI  Y+RCG+  +  A  +
Sbjct: 120 NFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSL 179

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F  MK  ++VV+WN+MIGG    G    A +LF  M    +    +++ ++L   A AG 
Sbjct: 180 FLAMK-ERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDM----VSWNTMLDGYAKAGE 234

Query: 447 VEEGRQHFKSM 457
           ++   + F+ M
Sbjct: 235 MDRAFELFERM 245


>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 474

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 154/379 (40%), Positives = 225/379 (59%), Gaps = 4/379 (1%)

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK 258
           ++N+V W SMI  Y    D+VSAR  F+   ERD   WNTMISGYI + +M EA +LF +
Sbjct: 56  EKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFDQ 115

Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
           MP  D ++WN ++ GYA IG++E     F  MP++N+ SWN +I G   N      +  F
Sbjct: 116 MPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSF 175

Query: 319 IQMQVEGEK-PDRHTFSSILSMSSGIVDLHLGMQIHQM--VTKTVIPDVPINNALITMYA 375
            +M  EG   P+  T + +LS  + +     G  +H+          DV + NALI MY 
Sbjct: 176 KRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYG 235

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +CGAI  A  +F+ +K  ++++SWN MI G A+HG  TEAL LF  M++  + P  +TF+
Sbjct: 236 KCGAIEIAMEVFKGIKR-RDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFV 294

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
            VL AC H GLVE+G  +F SM  ++ I P IEH   +VD++ R G L  A++ I  MP 
Sbjct: 295 GVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPV 354

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           + D  +W  LLGA +V+  V++ +VA E L+K+EP N   +V+L N+Y D GR+DDA  +
Sbjct: 355 KADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAARL 414

Query: 556 RLLMKSNNIKKPTGYSWVD 574
           ++ M+    KK  G SW++
Sbjct: 415 KVAMRDTGFKKEAGVSWIE 433



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/395 (29%), Positives = 192/395 (48%), Gaps = 36/395 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+GY+  +++  AR+ FD  P+RD+V WN MISGYI     G + EAR LFD MP RD 
Sbjct: 65  MINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIE---MGNMLEARSLFDQMPCRDV 121

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++WNTV+ GYA  G+ME   R+F+ MP RNV SWN +I G+ QNG V+  +  F RM   
Sbjct: 122 MSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDE 181

Query: 121 DS-----ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
            S     A+++ ++S   + G  D   + + K G      +  V   N LI  YG+ G +
Sbjct: 182 GSVVPNDATMTLVLSACAKLGAFD-FGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAI 240

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LER 231
           E A ++F  I             +R+++SWN+MI   A  G    A  +F +M    +  
Sbjct: 241 EIAMEVFKGIK------------RRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISP 288

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKM-----PHPDTLTWNAMVSGYAQIGNLELALDF 286
           D  ++  ++    H+  +E+    F  M       P+      +V   ++ G L  A++F
Sbjct: 289 DKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEF 348

Query: 287 FKRMPQK-NLVSWNSMIAGCETNKDYE-GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
             +MP K + V W +++   +  K  + G + L   +++E   P      S +   +G  
Sbjct: 349 INKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRF 408

Query: 345 D----LHLGMQIHQMVTKTVIPDVPINNALITMYA 375
           D    L + M+      +  +  +  ++ L+  Y+
Sbjct: 409 DDAARLKVAMRDTGFKKEAGVSWIETDDGLVKFYS 443



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 17/285 (5%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGY 70
           +A A K+F EM +++VV W  MI+GY+ ++    L  AR  FD+ PERD V WNT+ISGY
Sbjct: 44  IASANKVFCEMVEKNVVLWTSMINGYLLNKD---LVSARRYFDLSPERDIVLWNTMISGY 100

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
            + G M EA  LF+ MP R+V+SWN ++ G+   GD+      FD MP R+  S + L+ 
Sbjct: 101 IEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIK 160

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVR-AYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           G  QNG + E   VL       D G  +   A  TL++    +    +  K   K     
Sbjct: 161 GYAQNGRVSE---VLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETL 217

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
              + +V  K      N++I  Y K G +  A E+F+ +  RD  SWNTMI+G       
Sbjct: 218 GYNKVDVNVK------NALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHG 271

Query: 250 EEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
            EA NLF +M +    PD +T+  ++     +G +E  L +F  M
Sbjct: 272 TEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSM 316



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 18/243 (7%)

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
           +G +  A   F  M +KN+V W SMI G   NKD   A + F         P+R     +
Sbjct: 41  MGVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYF------DLSPERDI---V 91

Query: 337 L--SMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           L  +M SG +++   ++   +  +    DV   N ++  YA  G +     +F++M   +
Sbjct: 92  LWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMP-ER 150

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSM-RSFKVLPTYITFISVLSACAHAGLVEEGR-- 451
           NV SWN +I G A +G  +E L  FK M     V+P   T   VLSACA  G  + G+  
Sbjct: 151 NVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWV 210

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
             +   +    ++  +++  +L+D+ G+ G +E AM++ KG+    D   W  ++     
Sbjct: 211 HKYGETLGYNKVDVNVKN--ALIDMYGKCGAIEIAMEVFKGIK-RRDLISWNTMINGLAA 267

Query: 512 HNN 514
           H +
Sbjct: 268 HGH 270


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 184/554 (33%), Positives = 297/554 (53%), Gaps = 28/554 (5%)

Query: 36  YISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWN 95
           +  ++ SG +  AR +FD +P+     WNT+I GY++    E  + L+  M   N+   +
Sbjct: 76  FCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKP-D 134

Query: 96  AMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGL-IQNG--------ELDEAARVLV 146
                FL  G   +    + ++    +     L S L +Q G         L   AR + 
Sbjct: 135 GFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIF 194

Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
             G   DG E  V  +N ++ GY +  R EE+++LF ++   C+          N V+  
Sbjct: 195 DMG---DGWE--VVTWNVVLSGYNRFKRYEESKRLFIEMEKKCEC------VSPNSVTLV 243

Query: 207 SMIMCYAKAGDVVSAREIF-----EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
            M+   +K  D+V  + I+     E ++E +    N +I  +    +M+ A  +F +M  
Sbjct: 244 LMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKT 303

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            D ++W ++V+G+A    ++LA  +F +MP+++ VSW +MI G      ++  + LF  M
Sbjct: 304 RDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDM 363

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAI 380
           Q+   KPD  T  SIL+  + +  L LG      + K  I  D  I NALI MY +CG +
Sbjct: 364 QMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNV 423

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
            +A+ IF EM+  K+  +W AMI G A++G   EAL +F  M    V P  IT+I V+ A
Sbjct: 424 EKAKKIFNEMQK-KDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCA 482

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C H GLV +G+  F +M  ++GI+P + H+  +VD++GR G L++A+++I  MP +P+  
Sbjct: 483 CTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSI 542

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
           VWG+LLGACRVH NV+LA++AA  ++++EPEN   YVLL N+YA   +W + + VR +M 
Sbjct: 543 VWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMM 602

Query: 561 SNNIKKPTGYSWVD 574
              IKK  G S ++
Sbjct: 603 ERGIKKIPGCSLME 616



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 179/399 (44%), Gaps = 40/399 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR------DVVSWNVMISG--YISSRGSGFLEEARYLF 52
           ++SGY + +   ++++LF EM ++      + V+  +M+S    +     G     +Y+ 
Sbjct: 208 VLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIK 267

Query: 53  DIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIE 112
           + + E + +  N +I  +A  GEM+ A  +F+ M  R+V+SW ++++GF     +  A +
Sbjct: 268 EGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARK 327

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG-SRCDGGEDLVRAYNTLIVGYGQ 171
           +FD+MP RD  S +A++ G ++     E   +      S     E  + +  T     G 
Sbjct: 328 YFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGA 387

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
               E A+   DK  +  D   G           N++I  Y K G+V  A++IF +M ++
Sbjct: 388 LELGEWAKTYIDKNKIKNDTFIG-----------NALIDMYFKCGNVEKAKKIFNEMQKK 436

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFF 287
           D F+W  MI G  +    EEA  +F  M      PD +T+  ++     +G +     FF
Sbjct: 437 DKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFF 496

Query: 288 KRMP-----QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
             M      + NL  +  M+         + A+++ + M V   KP+   + S+L    G
Sbjct: 497 SNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPV---KPNSIVWGSLL----G 549

Query: 343 IVDLHLGMQIHQMVTKTVIPDVPINNA----LITMYARC 377
              +H  +Q+ +M    ++   P N A    L  +YA C
Sbjct: 550 ACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAAC 588


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 213/672 (31%), Positives = 324/672 (48%), Gaps = 125/672 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS---------------------- 38
           +I+ YV+  ++  A+KLFDEM  R++V+W  +ISGY                        
Sbjct: 140 LINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPN 199

Query: 39  --SRGS--------------------GFLEEARYLFDIMPERDCVTWNTVISGYAKT-GE 75
             + GS                    G + + RY  D+      V  N +IS Y      
Sbjct: 200 HYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDV------VVCNVLISMYGSCLDS 253

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----------PGRDSASL 125
             +A  +F+ +  RN +SWN++IS + + GD  +A + F  M          P    +  
Sbjct: 254 ANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEF 313

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           S L  G  +  E+   A V+     R    ++ V   N L+  Y + G + +A  +F+  
Sbjct: 314 SVLEEGRRKGREVH--AHVI-----RTGLNDNKVAIGNGLVNMYAKSGAIADACSVFE-- 364

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG--- 242
                     +  +++ VSWNS+I    +      A E+F  M E D  SWN++I     
Sbjct: 365 ----------LMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSD 414

Query: 243 --------------------------YIHVLD------MEEASN----LFVKMP-HPDTL 265
                                     +I++L       + E S+    L +K     DT 
Sbjct: 415 SEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTA 474

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQ-KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
             NA++S Y + G +      F RM + ++ VSWNSMI+G   N+    A+ L   M  +
Sbjct: 475 IGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQK 534

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEA 383
           G++ D  TF++ILS  + +  L  GM++H    +  +  DV + +AL+ MY++CG I  A
Sbjct: 535 GQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYA 594

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
              FE M L +NV SWN+MI G A HG   +AL+LF  M      P ++TF+ VLSAC+H
Sbjct: 595 SRFFELMPL-RNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSH 653

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
            G VEEG +HFKSM   Y + PR+EHF+ +VD++GR G+L++  D I  MP +P+  +W 
Sbjct: 654 VGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWR 713

Query: 504 ALLGACRVHN--NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
            +LGAC   N  N EL + AAE L+++EP+N+  YVLL NMYA   +W+D  + R  MK 
Sbjct: 714 TVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKE 773

Query: 562 NNIKKPTGYSWV 573
             +KK  G SWV
Sbjct: 774 AAVKKEAGCSWV 785



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 152/547 (27%), Positives = 243/547 (44%), Gaps = 92/547 (16%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           NT+I+ Y + G++  A +LF+ M  RN+V+W  +ISG+ QNG    A   F  M      
Sbjct: 138 NTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDM------ 191

Query: 124 SLSALVSGLIQNG-ELDEAARVLVKCG--------------SRCDGGEDLVRAYNTLIVG 168
               + +G I N      A R   + G              S+   G D+V   N LI  
Sbjct: 192 ----VRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVV-VCNVLISM 246

Query: 169 YGQ-RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
           YG       +AR +FD I +            RN +SWNS+I  Y++ GD VSA ++F  
Sbjct: 247 YGSCLDSANDARSVFDGIGI------------RNSISWNSIISVYSRRGDAVSAYDLFSS 294

Query: 228 MLER---------DTFS-------------------------------WNTMISGYIHVL 247
           M +          D FS                                N +++ Y    
Sbjct: 295 MQKEGLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSG 354

Query: 248 DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI-AGCE 306
            + +A ++F  M   D+++WN+++SG  Q    E A + F  MP+ + VSWNS+I A  +
Sbjct: 355 AIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSD 414

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVP 365
           +      A+K F+QM   G    R TF +ILS  S +    +  QIH +V K  +  D  
Sbjct: 415 SEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTA 474

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           I NAL++ Y +CG + E   IF  M   ++ VSWN+MI G   +    +A++L   M   
Sbjct: 475 IGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQK 534

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH----FASLVDIVGRHG 481
                  TF ++LSACA    +E G +     V+  GI   +E      ++LVD+  + G
Sbjct: 535 GQRLDSFTFATILSACASVATLERGME-----VHACGIRACLESDVVVGSALVDMYSKCG 589

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA-QVAAEALMKVEPENSTPYVLLY 540
           R++ A    + MP   +   W +++     H + E A ++    ++  +P +   +V + 
Sbjct: 590 RIDYASRFFELMPLR-NVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVL 648

Query: 541 NMYADVG 547
           +  + VG
Sbjct: 649 SACSHVG 655



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 113/472 (23%), Positives = 192/472 (40%), Gaps = 102/472 (21%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  N+   N++I  Y + GD+ SA+++F++M  R+  +W  +ISGY      +EA   F 
Sbjct: 130 FVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFR 189

Query: 258 KM------PH-----------------------------------PDTLTWNAMVSGYAQ 276
            M      P+                                    D +  N ++S Y  
Sbjct: 190 DMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGS 249

Query: 277 -IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE----KPDRH 331
            + +   A   F  +  +N +SWNS+I+      D   A  LF  MQ EG     KP+  
Sbjct: 250 CLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPN-D 308

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD--VPINNALITMYARCGAIVEARIIFEE 389
            FS    +  G      G ++H  V +T + D  V I N L+ MYA+ GAI +A  +FE 
Sbjct: 309 AFSEFSVLEEG---RRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFEL 365

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP-------------------- 429
           M + K+ VSWN++I G   +  + +A E+F  M  +  +                     
Sbjct: 366 M-VEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVK 424

Query: 430 ------------TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
                       + +TFI++LSA +   L E   Q   ++V +Y +        +L+   
Sbjct: 425 YFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQ-IHALVLKYCLSDDTAIGNALLSCY 483

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE----ALMKVEPENS 533
           G+ G + +   +   M    D+  W +++    +HN  EL   A +     + K +  +S
Sbjct: 484 GKCGEMNECEKIFARMSETRDEVSWNSMISG-YIHN--ELLHKAMDLVWFMMQKGQRLDS 540

Query: 534 TPYVLLYNMYADVGRWDDANEV-----RLLMKSNNIKKPTGYSWVD-FSPCG 579
             +  + +  A V   +   EV     R  ++S+ +    G + VD +S CG
Sbjct: 541 FTFATILSACASVATLERGMEVHACGIRACLESDVV---VGSALVDMYSKCG 589



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 156/346 (45%), Gaps = 65/346 (18%)

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKM 259
           ++ S+I  Y  +     ARE+  Q ++     + F  NT+I+ Y+ + D+  A  LF +M
Sbjct: 101 TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 160

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
            + + +TW  ++SGY Q G  + A   F+ M +   +                       
Sbjct: 161 SNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFI----------------------- 197

Query: 320 QMQVEGEKPDRHTFSSIL--SMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYAR 376
                   P+ + F S L     SG     LG+QIH +++KT    DV + N LI+MY  
Sbjct: 198 --------PNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGS 249

Query: 377 C-GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR------SFKVLP 429
           C  +  +AR +F+ +  ++N +SWN++I   +  G A  A +LF SM+      SFK   
Sbjct: 250 CLDSANDARSVFDGIG-IRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPND 308

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSM---VNEYGI-EPRIEHFASLVDIVGRHGRLED 485
            +  F           ++EEGR+  + +   V   G+ + ++     LV++  + G + D
Sbjct: 309 AFSEF----------SVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIAD 358

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
           A  + + M  E D   W +L+      +  E ++ AAE +  + PE
Sbjct: 359 ACSVFELM-VEKDSVSWNSLISGL---DQNECSEDAAE-MFSLMPE 399


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 196/634 (30%), Positives = 325/634 (51%), Gaps = 88/634 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
           +I  Y +  ++  AR +F+EM  RD VSWN +ISGY S+   GF E+A  ++       +
Sbjct: 162 LIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSN---GFWEDALDMYHKFRMTGM 218

Query: 55  MPERDCVTWNTVI-----------------------------------SGYAKTGEMEEA 79
           +P  DC T ++V+                                   S Y K   + EA
Sbjct: 219 VP--DCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREA 276

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF-DRMPG--RDSASLSALVSGLIQNG 136
            R+F+ M  ++ V+WN MI G+ Q G    +++ F D + G   D  S+++ +    Q+G
Sbjct: 277 RRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSG 336

Query: 137 ELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
           +L     V   L+  G  CD       A N LI  Y + G +  A+++FD     C    
Sbjct: 337 DLQVGKFVHKYLIGSGFECD-----TVACNILIDMYAKCGDLLAAQEVFDT--TKC---- 385

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LER--DTFSWNTMISGYIHVLDME 250
                 ++ V+WNS+I  Y ++G      E F+ M +ER  D+ ++  ++S +  + D+ 
Sbjct: 386 ------KDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADIN 439

Query: 251 EASNLFVKMPHPDTLTW---------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           +   +     H D + +         N+++  YA+ G ++  L  F  M   +++SWN++
Sbjct: 440 QGRGI-----HCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTV 494

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
           IA      D     ++  +M+ EG  PD  T   IL M S +     G +IH  + K+  
Sbjct: 495 IASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGF 554

Query: 362 -PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
             +VPI NALI MY++CG++     +F+ MK  K+VV+W A+I     +G   +AL+ F+
Sbjct: 555 ESNVPIGNALIEMYSKCGSLENCIKVFKYMKE-KDVVTWTALISAFGMYGEGKKALKAFQ 613

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M    VLP  + FI+ + AC+H+G+V+EG + F  M  +Y +EPR+EH+A +VD++ R 
Sbjct: 614 DMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARS 673

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G L  A + I  MP +PD ++WGALL ACR   N  +AQ  ++ ++++  +++  YVL+ 
Sbjct: 674 GLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVS 733

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N+YA +G+WD    VR  MK+  +KK  G SW++
Sbjct: 734 NIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIE 767



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 217/461 (47%), Gaps = 34/461 (7%)

Query: 66  VISGYAKTGEMEEALRLFNSM-PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---- 120
           +IS YA+  +   ++ +F S+ P  NV  WN++I     NG    A+ ++  M  +    
Sbjct: 60  LISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQP 119

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D+ +  ++++   +   LD     +V   +   G E  +   N LI  Y +   ++ AR 
Sbjct: 120 DAFTFPSVINSCARI--LDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARY 177

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSW 236
           +F+++              R+ VSWNS+I  Y   G    A +++ +     +  D F+ 
Sbjct: 178 VFEEMS------------NRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTM 225

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           ++++     ++ ++E   +   +       D +  N ++S Y +   L  A   F +M  
Sbjct: 226 SSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAV 285

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K+ V+WN+MI G      +E ++KLF+ M ++G  PD  + +S +       DL +G  +
Sbjct: 286 KDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFV 344

Query: 353 HQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H+ ++      D    N LI MYA+CG ++ A+ +F+  K  K+ V+WN++I G    G+
Sbjct: 345 HKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTK-CKDSVTWNSLINGYTQSGY 403

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             E LE FK M+  +  P  +TF+ +LS  +    + +GR      V ++G E  +    
Sbjct: 404 YKEGLESFKMMK-MERKPDSVTFVLLLSIFSQLADINQGRG-IHCDVIKFGFEAELIIGN 461

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           SL+D+  + G ++D + +   M    D   W  ++ A  VH
Sbjct: 462 SLLDVYAKCGEMDDLLKVFSYMSAH-DIISWNTVI-ASSVH 500



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 201/413 (48%), Gaps = 23/413 (5%)

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKI-----PVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
           +R  ++LI+  G    V  + KL  K      P++      ++    N+  WNS+I    
Sbjct: 38  LRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALT 97

Query: 214 KAGDVVSA----REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF---VKMP-HPDTL 265
             G    A     E+ E+ L+ D F++ ++I+    +LD+E    +    ++M    D  
Sbjct: 98  HNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLY 157

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
             NA++  Y++  +L+ A   F+ M  ++ VSWNS+I+G  +N  +E A+ ++ + ++ G
Sbjct: 158 IGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTG 217

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEAR 384
             PD  T SS+L     ++ +  G+ +H ++ K  I  DV I N L++MY +   + EAR
Sbjct: 218 MVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREAR 277

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F +M  +K+ V+WN MI G A  G    +++LF  M     +P  ++  S + AC  +
Sbjct: 278 RVFSKMA-VKDSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQS 335

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           G ++ G+   K ++   G E        L+D+  + G L  A ++      + D   W +
Sbjct: 336 GDLQVGKFVHKYLIGS-GFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCK-DSVTWNS 393

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPE-NSTPYVLLYNMYADVGRWDDANEVR 556
           L+      +      + +  +MK+E + +S  +VLL ++++ +    D N+ R
Sbjct: 394 LING-YTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLA---DINQGR 442


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 187/555 (33%), Positives = 296/555 (53%), Gaps = 67/555 (12%)

Query: 63  WNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----- 117
           WN++++ Y K G ++ A +LF  +  ++VVSWNAMI+   Q G+  NA+  F RM     
Sbjct: 262 WNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEP 321

Query: 118 ---PGRDS-ASLSALVSGLIQNGELDEAARVLVKCGSRCDGG------EDLVRAYNTLIV 167
              P R +  SL + VSGL             ++CG            E      N+LI 
Sbjct: 322 PVQPNRVTFLSLLSAVSGLSA-----------LRCGREIHAHIFRLSLEVDTSITNSLIT 370

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y +   V +AR++F+++ +            R+I+SWNSM+  Y +        +IF++
Sbjct: 371 FYSKCREVGKAREIFERLLL------------RDIISWNSMLAGYEQNEQQGRCFDIFKR 418

Query: 228 ML----ERDTFSWNTMI-------SGYIHVLDMEEASNLFVKMPHPDTLTW---NAMVSG 273
           M+    E D+ S   +        SG I+    +E     ++   P  ++    NA++  
Sbjct: 419 MMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKM 478

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           YA+   +  A   FK M  ++  SWN+M+ G   N  +E  + +F+ +  +G   D  + 
Sbjct: 479 YAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSL 538

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVP-------INNALITMYARCGAIVEARI 385
           S +L+    +V L LG Q H +V K     D P       INNALI+MY++CG+I +A  
Sbjct: 539 SILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQ 598

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F +M+  K+V SW AMI GCA HG A EAL+LF+ M++  + P  +TF+++L ACAH G
Sbjct: 599 VFLKMER-KDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGG 657

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK-GM----PFEPDKA 500
           LV+EG  +F SM N+YG+ P IEH+A ++D+ GR G+ + A  L++ G+    P+  D  
Sbjct: 658 LVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDIL 717

Query: 501 -VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
            +W  LLGAC     ++L   AA  ++++EPE+   Y+LL N+YA  G W+DA +VR  M
Sbjct: 718 NLWKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAM 777

Query: 560 KSNNIKKPTGYSWVD 574
           +   ++K  G SW+D
Sbjct: 778 RDKGLRKEVGCSWID 792



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 126/474 (26%), Positives = 234/474 (49%), Gaps = 48/474 (10%)

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
           C   +  +   ++   ++ A +LF++ P R+V+SW+A+I+ + + G+ A A   F +M G
Sbjct: 55  CSACSKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMG 114

Query: 120 R----DSASLSALVSGLIQNGELDEAARVL---VKCGSRCDGGEDLVRAYNTLIVGYGQR 172
                +  SL++L+      GE+    ++    ++ G   D G   +RA    I  Y + 
Sbjct: 115 EGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSG---IRA--AWITMYSRC 169

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           G +E+A+++FD+  +             +I+ WNS+I  Y   G  V    +F +M+   
Sbjct: 170 GVLEDAQRVFDETSL----------LALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVG 219

Query: 233 TFSWNTMISGYIHVLDMEEASN----------LFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
             +   +   Y  V++   +S             +K     T  WN++V+ Y + GNL+ 
Sbjct: 220 VVAPTELT--YASVVNACGSSGEEKYGAMVHGRIIKAGLEATNLWNSLVTFYGKCGNLQH 277

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGE-KPDRHTFSSILSMS 340
           A   F+R+ +K++VSWN+MIA  E   + E A+ LF +M +VE   +P+R TF S+LS  
Sbjct: 278 ASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAV 337

Query: 341 SGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           SG+  L  G +IH  + +  +  D  I N+LIT Y++C  + +AR IFE + LL++++SW
Sbjct: 338 SGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERL-LLRDIISW 396

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH--AGLV-----EEGRQ 452
           N+M+ G   +       ++FK M    + P   +   + +A +   +GL+     +E   
Sbjct: 397 NSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHG 456

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +    +   G+   + +  +++ +  +  R+ DA  + KGM    D   W A++
Sbjct: 457 YILRRITPGGVSLSVSN--AILKMYAKFNRIADAEKIFKGMK-NRDSYSWNAMM 507



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 124/533 (23%), Positives = 234/533 (43%), Gaps = 96/533 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG----------------- 43
           +++ Y K   +  A +LF+ + ++DVVSWN MI+     RG G                 
Sbjct: 265 LVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAAN-EQRGEGENALGLFRRMLKVEPPV 323

Query: 44  ------FL----------------EEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALR 81
                 FL                E   ++F +  E D    N++I+ Y+K  E+ +A  
Sbjct: 324 QPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKARE 383

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALV------ 129
           +F  +  R+++SWN+M++G+ QN       + F RM      P  DS SL+ +       
Sbjct: 384 IFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEP--DSHSLTIIFNAASRD 441

Query: 130 -SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
            SGLI      E    +++   R   G   +   N ++  Y +  R+ +A K+F      
Sbjct: 442 SSGLIYFRRGKEIHGYILR---RITPGGVSLSVSNAILKMYAKFNRIADAEKIF------ 492

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYI 244
             +G  N    R+  SWN+M+  Y++         IF  +L++    D  S + +++   
Sbjct: 493 --KGMKN----RDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCG 546

Query: 245 HVLDMEEASNLFV---------KMPHPDTLTW--NAMVSGYAQIGNLELALDFFKRMPQK 293
            ++ ++                  PH D+L    NA++S Y++ G+++ A   F +M +K
Sbjct: 547 RLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERK 606

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL-SMSSGIVDLHLGMQI 352
           ++ SW +MI GC  +     A++LF +M+ +G KP++ TF ++L + + G +        
Sbjct: 607 DVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYF 666

Query: 353 HQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFE-EMKLLK----NVVS-WNAMIGG 405
             M     + P +     +I ++ R G    A+ + E  + L K    ++++ W  ++G 
Sbjct: 667 DSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGA 726

Query: 406 CASHGFATEALELFKSMRSFKVLPT-YITFISVLSACAHAGLVEEGRQHFKSM 457
           C  H      L +  + +  ++ P    T+I + +  A +GL E+  +  K+M
Sbjct: 727 C--HASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAM 777


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 188/621 (30%), Positives = 312/621 (50%), Gaps = 70/621 (11%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG------------------------FL 45
           +++ AR LFD++P   +  +N +I  Y S RG                           L
Sbjct: 78  DLSLARHLFDQIPAPGIHDYNALIRAY-SLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 46  EEARYLFDIMPER-------------DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV 92
           +    L D+   R             D      ++  YAK      A  +F  MPAR+VV
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVV 196

Query: 93  SWNAMISGFLQNGDVANAIEFF-----DRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
           +WNAM++G+  +G  ++ I        D  P  ++++L AL+  L Q+G L +   V   
Sbjct: 197 AWNAMLAGYALHGKYSDTIACLLLMQDDHAP--NASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 148 CGSRCD--GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
               C     +D V     L+  Y + G +  A ++F+ + V            RN V+W
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAV------------RNEVTW 302

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLER-----DTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           ++++  +   G ++ A  +F+ ML +        S  + +    ++ D+     L   + 
Sbjct: 303 SALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLA 362

Query: 261 ----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
               H D    N+++S YA+ G ++ A   F +M  K+ VS++++++G   N   + A +
Sbjct: 363 KSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFR 422

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYA 375
           +F +MQ    +PD  T  S++   S +  L  G   H  ++ + +  +  I NALI MYA
Sbjct: 423 VFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYA 482

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +CG I  +R IF+ M   +++VSWN MI G   HG   EA  LF  M+     P  +TFI
Sbjct: 483 KCGRIDLSRQIFDVMPA-RDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFI 541

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
            ++SAC+H+GLV EG++ F  M ++YGI PR+EH+  +VD++ R G L++A   I+GMP 
Sbjct: 542 CLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPL 601

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           + D  VWGALLGACRVH N++L +  +  + ++ PE +  +VLL N+++  GR+D+A EV
Sbjct: 602 KADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEV 661

Query: 556 RLLMKSNNIKKPTGYSWVDFS 576
           R++ K    KK  G SW++ +
Sbjct: 662 RIIQKEQGFKKSPGCSWIEIN 682



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 161/365 (44%), Gaps = 69/365 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-DIMPERD 59
           ++  Y K   +  A ++F+ M  R+ V+W+ ++ G++     G + EA  LF D++ +  
Sbjct: 274 LLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVL---CGRMLEAFSLFKDMLAQGL 330

Query: 60  CVTWNTVISGYAKT---------GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANA 110
           C    T ++   +          G+   AL L  S    ++ + N+++S + + G +  A
Sbjct: 331 CFLSPTSVASALRACANLSDLCLGKQLHAL-LAKSGLHTDLTAGNSLLSMYAKAGLIDQA 389

Query: 111 IEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK-------------------CG-- 149
              FD+M  +D+ S SALVSG +QNG+ DEA RV  K                   C   
Sbjct: 390 TTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHL 449

Query: 150 -----SRCDGGEDLVRAY-------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
                 +C  G  +VR         N LI  Y + GR++ +R++FD +P           
Sbjct: 450 AALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPA---------- 499

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIF----EQMLERDTFSWNTMISGYIHVLDMEEAS 253
             R+IVSWN+MI  Y   G    A  +F     Q  E D  ++  +IS   H   + E  
Sbjct: 500 --RDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGK 557

Query: 254 NLFVKMPHPDTLT-----WNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCET 307
             F  M H   +T     +  MV   A+ G L+ A  F + MP K ++  W +++  C  
Sbjct: 558 RWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRV 617

Query: 308 NKDYE 312
           +K+ +
Sbjct: 618 HKNID 622



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/448 (23%), Positives = 193/448 (43%), Gaps = 78/448 (17%)

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML--- 229
           G +  AR LFD+IP               I  +N++I  Y+  G  ++ R          
Sbjct: 77  GDLSLARHLFDQIPAP------------GIHDYNALIRAYSLRGPALALRLYRSLRRRRL 124

Query: 230 -ERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELAL 284
            + + +++  ++     +LD+  A  +         H D     A+V  YA+  +   A 
Sbjct: 125 PQPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAA 184

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
             F+RMP +++V+WN+M+AG   +  Y   I   + MQ +   P+  T  ++L + +   
Sbjct: 185 TVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQ-DDHAPNASTLVALLPLLAQHG 243

Query: 345 DLHLGMQIHQMVTKTV-IPD----VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
            L  G  +H    +   + D    V +  AL+ MYA+CG +V A  +FE M  ++N V+W
Sbjct: 244 ALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMA-VRNEVTW 302

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVL---PTYITFISVLSACAH------------- 443
           +A++GG    G   EA  LFK M +  +    PT +   S L ACA+             
Sbjct: 303 SALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLCLGKQLHAL 360

Query: 444 ----------------------AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
                                 AGL+++    F  MV +  +      +++LV    ++G
Sbjct: 361 LAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVS-----YSALVSGYVQNG 415

Query: 482 RLEDAMDLIKGMP---FEPDKAVWGALLGACRVHNNVELAQVAAEALM--KVEPENSTPY 536
           + ++A  + + M     +PD A   +L+ AC     ++  +    +++   +  E S   
Sbjct: 416 KADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICN 475

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNI 564
            L+ +MYA  GR D + ++  +M + +I
Sbjct: 476 ALI-DMYAKCGRIDLSRQIFDVMPARDI 502


>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
          Length = 421

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 154/379 (40%), Positives = 225/379 (59%), Gaps = 4/379 (1%)

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK 258
           ++N+V W SMI  Y    D+VSAR  F+   ERD   WNTMISGYI + +M EA +LF +
Sbjct: 3   EKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFDQ 62

Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
           MP  D ++WN ++ GYA IG++E     F  MP++N+ SWN +I G   N      +  F
Sbjct: 63  MPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSF 122

Query: 319 IQMQVEGEK-PDRHTFSSILSMSSGIVDLHLGMQIHQM--VTKTVIPDVPINNALITMYA 375
            +M  EG   P+  T + +LS  + +     G  +H+          DV + NALI MY 
Sbjct: 123 KRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYG 182

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +CGAI  A  +F+ +K  ++++SWN MI G A+HG  TEAL LF  M++  + P  +TF+
Sbjct: 183 KCGAIEIAMEVFKGIKR-RDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFV 241

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
            VL AC H GLVE+G  +F SM  ++ I P IEH   +VD++ R G L  A++ I  MP 
Sbjct: 242 GVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPV 301

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           + D  +W  LLGA +V+  V++ +VA E L+K+EP N   +V+L N+Y D GR+DDA  +
Sbjct: 302 KADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAARL 361

Query: 556 RLLMKSNNIKKPTGYSWVD 574
           ++ M+    KK  G SW++
Sbjct: 362 KVAMRDTGFKKEAGVSWIE 380



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/395 (29%), Positives = 192/395 (48%), Gaps = 36/395 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+GY+  +++  AR+ FD  P+RD+V WN MISGYI     G + EAR LFD MP RD 
Sbjct: 12  MINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIE---MGNMLEARSLFDQMPCRDV 68

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++WNTV+ GYA  G+ME   R+F+ MP RNV SWN +I G+ QNG V+  +  F RM   
Sbjct: 69  MSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDE 128

Query: 121 DS-----ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
            S     A+++ ++S   + G  D   + + K G      +  V   N LI  YG+ G +
Sbjct: 129 GSVVPNDATMTLVLSACAKLGAFD-FGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAI 187

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LER 231
           E A ++F  I             +R+++SWN+MI   A  G    A  +F +M    +  
Sbjct: 188 EIAMEVFKGIK------------RRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISP 235

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKM-----PHPDTLTWNAMVSGYAQIGNLELALDF 286
           D  ++  ++    H+  +E+    F  M       P+      +V   ++ G L  A++F
Sbjct: 236 DKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEF 295

Query: 287 FKRMPQK-NLVSWNSMIAGCETNKDYE-GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
             +MP K + V W +++   +  K  + G + L   +++E   P      S +   +G  
Sbjct: 296 INKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRF 355

Query: 345 D----LHLGMQIHQMVTKTVIPDVPINNALITMYA 375
           D    L + M+      +  +  +  ++ L+  Y+
Sbjct: 356 DDAARLKVAMRDTGFKKEAGVSWIETDDGLVKFYS 390



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/275 (34%), Positives = 139/275 (50%), Gaps = 17/275 (6%)

Query: 21  MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEAL 80
           M +++VV W  MI+GY+ ++    L  AR  FD+ PERD V WNT+ISGY + G M EA 
Sbjct: 1   MVEKNVVLWTSMINGYLLNKD---LVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEAR 57

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
            LF+ MP R+V+SWN ++ G+   GD+      FD MP R+  S + L+ G  QNG + E
Sbjct: 58  SLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSE 117

Query: 141 AARVLVKCGSRCDGGEDLVR-AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
              VL       D G  +   A  TL++    +    +  K   K        + +V  K
Sbjct: 118 ---VLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVK 174

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
                 N++I  Y K G +  A E+F+ +  RD  SWNTMI+G        EA NLF +M
Sbjct: 175 ------NALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEM 228

Query: 260 PH----PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
            +    PD +T+  ++     +G +E  L +F  M
Sbjct: 229 KNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSM 263


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 178/488 (36%), Positives = 285/488 (58%), Gaps = 22/488 (4%)

Query: 96  AMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGG 155
           +M   +++ G + +A + FDRM  +D  + SAL+    + G L+E  R+L +  S   G 
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMES--SGI 213

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
           E  + ++N ++ G+ + G  +EA  +F KI         ++ F  + V+ +S++     +
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIH--------HLGFCPDQVTVSSVLPSVGDS 265

Query: 216 GDVVSAREI----FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMV 271
             +   R I     +Q L +D    + MI  Y     +    +LF +    +    NA +
Sbjct: 266 EMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYI 325

Query: 272 SGYAQIGNLELALDFFKRMPQK----NLVSWNSMIAGCETN-KDYEGAIKLFIQMQVEGE 326
           +G ++ G ++ AL+ F+   ++    N+VSW S+IAGC  N KD E A++LF +MQV G 
Sbjct: 326 TGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIE-ALELFREMQVAGV 384

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARI 385
           KP+  T  S+L     I  L  G   H    +  ++ +V + +ALI MYA+CG I  ++I
Sbjct: 385 KPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQI 444

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F  M   KN+V WN+++ G + HG A E + +F+S+   ++ P +I+F S+LSAC   G
Sbjct: 445 VFNMMPT-KNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVG 503

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           L +EG ++FK M  EYGI+PR+EH++ +V+++GR G+L++A DLIK MPFEPD  VWGAL
Sbjct: 504 LTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGAL 563

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           L +CR+ NNV+LA++AAE L  +EPEN   YVLL N+YA  G W + + +R  M+S  +K
Sbjct: 564 LNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLK 623

Query: 566 KPTGYSWV 573
           K  G SW+
Sbjct: 624 KNPGCSWI 631



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 188/428 (43%), Gaps = 39/428 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           M   Y++   M  ARK+FD M  +DVV+ + ++  Y      G LEE   +   M     
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYAR---KGCLEEVVRILSEMESSGI 213

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E + V+WN ++SG+ ++G  +EA+ +F  +           +S  L +   +  +     
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273

Query: 117 MPG--------RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           + G        +D   +SA++    ++G +     +  +      G        N  I G
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAG------VCNAYITG 327

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
             + G V++A ++F+               + N+VSW S+I   A+ G  + A E+F +M
Sbjct: 328 LSRNGLVDKALEMFELFKEQ--------TMELNVVSWTSIIAGCAQNGKDIEALELFREM 379

Query: 229 ----LERDTFSWNTMI--SGYIHVLDMEEASNLFVKMPH--PDTLTWNAMVSGYAQIGNL 280
               ++ +  +  +M+   G I  L    +++ F    H   +    +A++  YA+ G +
Sbjct: 380 QVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRI 439

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
            L+   F  MP KNLV WNS++ G   +   +  + +F  +     KPD  +F+S+LS  
Sbjct: 440 NLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSAC 499

Query: 341 SGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
             +     G +  +M+++   + P +   + ++ +  R G + EA  + +EM    +   
Sbjct: 500 GQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCV 559

Query: 399 WNAMIGGC 406
           W A++  C
Sbjct: 560 WGALLNSC 567



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 149/361 (41%), Gaps = 65/361 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           MI  Y K   +     LF++    +    N  I+G   SR +G +++A  +F++  E+  
Sbjct: 293 MIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGL--SR-NGLVDKALEMFELFKEQTM 349

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
             + V+W ++I+G A+ G+  EAL LF  M    V   +  I   L              
Sbjct: 350 ELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML-------------- 395

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            P     +++AL  G   +G    A RV +          D V   + LI  Y + GR+ 
Sbjct: 396 -PA--CGNIAALGHGRSTHG---FAVRVHLL---------DNVHVGSALIDMYAKCGRIN 440

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERD 232
            ++ +F+ +P             +N+V WNS++  ++  G       IFE +    L+ D
Sbjct: 441 LSQIVFNMMPT------------KNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPD 488

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFF 287
             S+ +++S    V   +E    F  M       P    ++ MV+   + G L+ A D  
Sbjct: 489 FISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLI 548

Query: 288 KRMP-QKNLVSWNSMIAGCETNKDYE----GAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           K MP + +   W +++  C    + +     A KLF    +E E P  +   S +  + G
Sbjct: 549 KEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLF---HLEPENPGTYVLLSNIYAAKG 605

Query: 343 I 343
           +
Sbjct: 606 M 606


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 193/629 (30%), Positives = 323/629 (51%), Gaps = 78/629 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
           +I  Y +  ++  AR +F+EM  RD VSWN +ISGY S+   GF E+A  ++       +
Sbjct: 162 LIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSN---GFWEDALDMYHKFRMTGM 218

Query: 55  MPERDCVTWNTVI-----------------------------------SGYAKTGEMEEA 79
           +P  DC T ++V+                                   S Y K   + EA
Sbjct: 219 VP--DCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREA 276

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF-DRMPG--RDSASLSALVSGLIQNG 136
            R+F+ M  ++ V+WN MI G+ Q G    +++ F D + G   D  S+++ +    Q+G
Sbjct: 277 RRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSG 336

Query: 137 ELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
           +L     V   L+  G  CD       A N LI  Y + G +  A+++FD          
Sbjct: 337 DLQVGKFVHKYLIGSGFECD-----TVACNILIDMYAKCGDLLAAQEVFDTTKC------ 385

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LER--DTFSWNTMISGYIHVLDME 250
                 ++ V+WNS+I  Y ++G      E F+ M +ER  D+ ++  ++S +  + D+ 
Sbjct: 386 ------KDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADIN 439

Query: 251 EASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           +   +   +       + +  N+++  YA+ G ++  L  F  M   +++SWN++IA   
Sbjct: 440 QGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSV 499

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVP 365
              D     ++  +M+ EG  PD  T   IL M S +     G +IH  + K+    +VP
Sbjct: 500 HFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVP 559

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           I NALI MY++CG++     +F+ MK  K+VV+W A+I     +G   +AL+ F+ M   
Sbjct: 560 IGNALIEMYSKCGSLENCIKVFKYMKE-KDVVTWTALISAFGMYGEGKKALKAFQDMELS 618

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            VLP  + FI+ + AC+H+G+V+EG + F  M  +Y +EPR+EH+A +VD++ R G L  
Sbjct: 619 GVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQ 678

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A + I  MP +PD ++WGALL ACR   N  +AQ  ++ ++++  +++  YVL+ N+YA 
Sbjct: 679 AEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYAT 738

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +G+WD    VR  MK+  +KK  G SW++
Sbjct: 739 LGKWDQVKTVRNSMKTKGLKKEPGSSWIE 767



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 217/461 (47%), Gaps = 34/461 (7%)

Query: 66  VISGYAKTGEMEEALRLFNSM-PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---- 120
           +IS YA+  +   ++ +F S+ P  NV  WN++I     NG    A+ ++  M  +    
Sbjct: 60  LISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQP 119

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D+ +  ++++   +   LD     +V   +   G E  +   N LI  Y +   ++ AR 
Sbjct: 120 DAFTFPSVINSCARI--LDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARY 177

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSW 236
           +F+++              R+ VSWNS+I  Y   G    A +++ +     +  D F+ 
Sbjct: 178 VFEEMS------------NRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTM 225

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           ++++     ++ ++E   +   +       D +  N ++S Y +   L  A   F +M  
Sbjct: 226 SSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAV 285

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K+ V+WN+MI G      +E ++KLF+ M ++G  PD  + +S +       DL +G  +
Sbjct: 286 KDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFV 344

Query: 353 HQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H+ ++      D    N LI MYA+CG ++ A+ +F+  K  K+ V+WN++I G    G+
Sbjct: 345 HKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTK-CKDSVTWNSLINGYTQSGY 403

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             E LE FK M+  +  P  +TF+ +LS  +    + +GR      V ++G E  +    
Sbjct: 404 YKEGLESFKMMK-MERKPDSVTFVLLLSIFSQLADINQGRG-IHCDVIKFGFEAELIIGN 461

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           SL+D+  + G ++D + +   M    D   W  ++ A  VH
Sbjct: 462 SLLDVYAKCGEMDDLLKVFSYMS-AHDIISWNTVI-ASSVH 500



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 201/413 (48%), Gaps = 23/413 (5%)

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKI-----PVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
           +R  ++LI+  G    V  + KL  K      P++      ++    N+  WNS+I    
Sbjct: 38  LRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALT 97

Query: 214 KAGDVVSA----REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF---VKMP-HPDTL 265
             G    A     E+ E+ L+ D F++ ++I+    +LD+E    +    ++M    D  
Sbjct: 98  HNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLY 157

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
             NA++  Y++  +L+ A   F+ M  ++ VSWNS+I+G  +N  +E A+ ++ + ++ G
Sbjct: 158 IGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTG 217

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEAR 384
             PD  T SS+L     ++ +  G+ +H ++ K  I  DV I N L++MY +   + EAR
Sbjct: 218 MVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREAR 277

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F +M  +K+ V+WN MI G A  G    +++LF  M     +P  ++  S + AC  +
Sbjct: 278 RVFSKMA-VKDSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQS 335

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           G ++ G+   K ++   G E        L+D+  + G L  A ++      + D   W +
Sbjct: 336 GDLQVGKFVHKYLIGS-GFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCK-DSVTWNS 393

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPE-NSTPYVLLYNMYADVGRWDDANEVR 556
           L+      +      + +  +MK+E + +S  +VLL ++++ +    D N+ R
Sbjct: 394 LING-YTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLA---DINQGR 442


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 197/618 (31%), Positives = 315/618 (50%), Gaps = 74/618 (11%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER------------ 58
           M +AR+ FD +  + VV+WN +I+GY      G ++EA  LF  M +             
Sbjct: 112 MLEARQTFDSVENKTVVTWNAIIAGYAQL---GHVKEAFALFRQMVDEAMEPSIITFLIV 168

Query: 59  ---------------------------DCVTWNTVISGYAKTGEMEEALRLFNSMPARNV 91
                                      D      ++S Y K G M+ A ++F+ +  R+V
Sbjct: 169 LDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDV 228

Query: 92  VSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVSGLIQNGELDEAARVL 145
            ++N MI G+ ++GD   A + F RM      P R   S  +++ G      L     V 
Sbjct: 229 STFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNR--ISFLSILDGCSTPEALAWGKAVH 286

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
            +C +   G  D VR    LI  Y   G +E AR++FDK+ V            R++VSW
Sbjct: 287 AQCMN--TGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKV------------RDVVSW 332

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
             MI  YA+  ++  A  +F  M E     D  ++  +I+      D+  A  +  ++  
Sbjct: 333 TVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVR 392

Query: 262 P----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                D L   A+V  YA+ G ++ A   F  M ++++VSW++MI     N   E A + 
Sbjct: 393 AGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFET 452

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYAR 376
           F  M+    +PD  T+ ++L+    +  L LGM+I+ Q +   ++  +P+ NALI M  +
Sbjct: 453 FHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVK 512

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
            G+I  AR IFE M + ++VV+WN MIGG + HG A EAL+LF  M   +  P  +TF+ 
Sbjct: 513 HGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVG 571

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           VLSAC+ AG VEEGR+ F  +++  GI P +E +  +VD++GR G L++A  LI  MP +
Sbjct: 572 VLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLK 631

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
           P+ ++W  LL ACR++ N+++A+ AAE  +  EP +   YV L +MYA  G W++  +VR
Sbjct: 632 PNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVR 691

Query: 557 LLMKSNNIKKPTGYSWVD 574
            +M+S  ++K  G +W++
Sbjct: 692 KVMESRGVRKEQGCTWIE 709



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 147/324 (45%), Gaps = 38/324 (11%)

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           N ++  ++  GN+  A   F  +  K +V+WN++IAG       + A  LF QM  E  +
Sbjct: 100 NTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAME 159

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARII 386
           P   TF  +L   S    L LG + H  V K   + D  I  AL++MY + G++  AR +
Sbjct: 160 PSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQV 219

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA---- 442
           F+ +   ++V ++N MIGG A  G   +A +LF  M+     P  I+F+S+L  C+    
Sbjct: 220 FDGL-YKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEA 278

Query: 443 -------HA-----GLVEEGRQHFKSMVNEY----GIEP--RIEHFASLVDIV------- 477
                  HA     GLV++ R    +++  Y     IE   R+     + D+V       
Sbjct: 279 LAWGKAVHAQCMNTGLVDDVRVA-TALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIR 337

Query: 478 --GRHGRLEDAMDLIKGMP---FEPDKAVWGALLGACRVHNNVELA-QVAAEALMKVEPE 531
               +  +EDA  L   M     +PD+  +  ++ AC    ++ LA ++ ++ +      
Sbjct: 338 GYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGT 397

Query: 532 NSTPYVLLYNMYADVGRWDDANEV 555
           +      L +MYA  G   DA +V
Sbjct: 398 DLLVDTALVHMYAKCGAIKDARQV 421



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 92/181 (50%), Gaps = 4/181 (2%)

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIF 387
           D  T+  +      + D  LG Q+   + ++    ++   N LI +++ CG ++EAR  F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
           + ++  K VV+WNA+I G A  G   EA  LF+ M    + P+ ITF+ VL AC+    +
Sbjct: 120 DSVEN-KTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGL 178

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           + G++ F + V + G         +LV +  + G ++ A  +  G+ ++ D + +  ++G
Sbjct: 179 KLGKE-FHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGL-YKRDVSTFNVMIG 236

Query: 508 A 508
            
Sbjct: 237 G 237


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 192/618 (31%), Positives = 314/618 (50%), Gaps = 73/618 (11%)

Query: 13  KARKLFDEMPQ-RDVVSWNVMISGYI--------------------------------SS 39
           +AR++FDE  + R+ VSWN M+S ++                                + 
Sbjct: 153 EARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNAC 212

Query: 40  RGSGFLEEARYLFDIMP----ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWN 95
            GS  LE  R +  ++     ++D  T N ++  Y+K G++  A  +F  +P  +VVSWN
Sbjct: 213 TGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWN 272

Query: 96  AMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR---------VLV 146
           A ISG + +G   +A+E   +M           +S +++      A            ++
Sbjct: 273 AFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMI 332

Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
           K    C   +D +     L+  Y + G +++ARK+F+ IP            +++++ WN
Sbjct: 333 KA---CADSDDYIGV--ALVDMYAKYGLLDDARKVFEWIP------------RKDLLLWN 375

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH-------VLDMEEASNLFVKM 259
           ++I   +  G    +  +F +M +  +    T ++  +        + D  +   L  K+
Sbjct: 376 ALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKI 435

Query: 260 PH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
               D+   N ++  Y +   L  A   F+     N++++ SMI         E AIKLF
Sbjct: 436 GFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLF 495

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARC 377
           ++M  +G +PD    SS+L+  + +     G Q+H  ++ +  + DV   NAL+  YA+C
Sbjct: 496 MEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKC 555

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G+I +A + F  +   K VVSW+AMIGG A HG    AL++F+ M   ++ P +IT  SV
Sbjct: 556 GSIEDADLAFSGLPD-KGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSV 614

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           L AC HAGLV+E + +F SM   +GI+   EH++ ++D++GR G+L+DAM+L+  MPFE 
Sbjct: 615 LCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEA 674

Query: 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
           + AVWGALL A RVH + EL ++AAE L  +EPE S  +VLL N YA  G WD+  +VR 
Sbjct: 675 NAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRK 734

Query: 558 LMKSNNIKKPTGYSWVDF 575
           LMK + +KK    SWV+ 
Sbjct: 735 LMKDSKVKKEPAMSWVEL 752



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 144/570 (25%), Positives = 247/570 (43%), Gaps = 80/570 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++S Y K R    AR++FDE P    VSW+ +++ Y     +    EA   F  M  R  
Sbjct: 43  LLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAY---SNNALPREALAAFRAMRARGV 99

Query: 59  ----------------------------------DCVTWNTVISGYAKTGEMEEALRLFN 84
                                             D    N +++ Y   G ++EA R+F+
Sbjct: 100 RCNEFALPIVLKCAPDAGLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFD 159

Query: 85  SMPA-RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD 139
                RN VSWN M+S F++N   ++A+E F  M       +    S +V+    + +L 
Sbjct: 160 EAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDL- 218

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           EA R +     R    +D+  A N L+  Y + G +  A  +F K+P            K
Sbjct: 219 EAGRKVHAMVVRTGYDKDVFTA-NALVDMYSKLGDIHMAALVFGKVP------------K 265

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMIS-----GYIHVLDME 250
            ++VSWN+ I      G    A E+  QM    L  + F+ ++++      G        
Sbjct: 266 TDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGR 325

Query: 251 EASNLFVK-MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           +     +K     D     A+V  YA+ G L+ A   F+ +P+K+L+ WN++I+GC    
Sbjct: 326 QIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGG 385

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINN 368
            +  ++ LF +M+ EG   +R T +++L  ++ +  +    Q+H +  K   + D  + N
Sbjct: 386 CHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVN 445

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
            LI  Y +C  +  A  +FEE     N++++ +MI   +      +A++LF  M    + 
Sbjct: 446 GLIDSYWKCNCLRYANKVFEEHS-SDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLE 504

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA--SLVDIVGRHGRLEDA 486
           P      S+L+ACA     E+G+Q    ++    +    + FA  +LV    + G +EDA
Sbjct: 505 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFM---TDVFAGNALVYTYAKCGSIEDA 561

Query: 487 MDLIKGMPFEPDKAV--WGALLGACRVHNN 514
                G+   PDK V  W A++G    H +
Sbjct: 562 DLAFSGL---PDKGVVSWSAMIGGLAQHGH 588



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 148/570 (25%), Positives = 242/570 (42%), Gaps = 94/570 (16%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N ++S Y   R  G    AR +FD  P+   V+W+++++ Y+      EAL  F +M AR
Sbjct: 41  NHLLSFYSKCRLPG---SARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRAR 97

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
            V                    EF          +L  ++      G   +   V V  G
Sbjct: 98  GV-----------------RCNEF----------ALPIVLKCAPDAGLGVQVHAVAVSTG 130

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
              D     +   N L+  YG  G V+EAR++FD+   +           RN VSWN M+
Sbjct: 131 LSGD-----IFVANALVAMYGGFGFVDEARRVFDEAARD-----------RNAVSWNGMM 174

Query: 210 MCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP--- 262
             + K      A E+F +M    +  + F ++ +++      D+E    +   +      
Sbjct: 175 SAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYD 234

Query: 263 -DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            D  T NA+V  Y+++G++ +A   F ++P+ ++VSWN+ I+GC  +   + A++L +QM
Sbjct: 235 KDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQM 294

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGM--QIHQ-MVTKTVIPDVPINNALITMYARCG 378
           +  G  P+  T SSIL   +G       +  QIH  M+      D  I  AL+ MYA+ G
Sbjct: 295 KSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYG 354

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
            + +AR +FE +   K+++ WNA+I GC+  G   E+L LF  MR         T  +VL
Sbjct: 355 LLDDARKVFEWIP-RKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVL 413

Query: 439 SACAHAGLVEEGRQ-----------------------HFKSMVNEYGIEPRIEH------ 469
            + A    + +  Q                       ++K     Y  +   EH      
Sbjct: 414 KSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNII 473

Query: 470 -FASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
            F S++  + +    EDA+ L   M     EPD  V  +LL AC   +  E  +     L
Sbjct: 474 AFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 533

Query: 526 MKVE--PENSTPYVLLYNMYADVGRWDDAN 553
           +K +   +      L+Y  YA  G  +DA+
Sbjct: 534 IKRKFMTDVFAGNALVYT-YAKCGSIEDAD 562


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 193/601 (32%), Positives = 313/601 (52%), Gaps = 51/601 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDV------VSWNVMISG-----YISSRGSGFLEEAR 49
           M+ G+ K  ++ KA + F  M   DV       ++ + + G      +     G L ++ 
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165

Query: 50  YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVAN 109
           +  D+           + + YAK  ++ EA ++F+ MP R++VSWN +++G+ QNG    
Sbjct: 166 FSLDLF------AMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARM 219

Query: 110 AIEFFDRMPGRD-SASLSALVSGLIQNGELDEAARVLVKCGSRC------DGGEDLVRAY 162
           A+E    M   +   S   +VS L     L      L+  G          G + LV   
Sbjct: 220 ALEMVKSMCEENLKPSFITIVSVLPAVSALR-----LISVGKEIHGYAMRSGFDSLVNIS 274

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
             L+  Y + G +E AR+LFD +             +RN+VSWNSMI  Y +  +   A 
Sbjct: 275 TALVDMYAKCGSLETARQLFDGM------------LERNVVSWNSMIDAYVQNENPKEAM 322

Query: 223 EIFEQMLERDTFSWNTMISGYIHVL----DMEEA---SNLFVKMPHPDTLTW-NAMVSGY 274
            IF++ML+      +  + G +H      D+E       L V++     ++  N+++S Y
Sbjct: 323 LIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMY 382

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
            +   ++ A   F ++  + LVSWN+MI G   N     A+  F QM+    KPD  T+ 
Sbjct: 383 CKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYV 442

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLL 393
           S+++  + +   H    IH +V ++ +  +V +  AL+ MYA+CGAI+ AR+IF+ M   
Sbjct: 443 SVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSE- 501

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           ++V +WNAMI G  +HGF   ALELF+ M+   + P  +TF+SV+SAC+H+GLVE G + 
Sbjct: 502 RHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKC 561

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
           F  M   Y IE  ++H+ ++VD++GR GRL +A D I  MP +P   V+GA+LGAC++H 
Sbjct: 562 FYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHK 621

Query: 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           NV  A+ AAE L ++ P++   +VLL N+Y     W+   +VR+ M    ++K  G S V
Sbjct: 622 NVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMV 681

Query: 574 D 574
           +
Sbjct: 682 E 682



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 130/463 (28%), Positives = 229/463 (49%), Gaps = 36/463 (7%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
           ++S + + G ++EA R+F  + ++  V ++ M+ GF +  D+  A++FF RM   D   +
Sbjct: 75  LVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPV 134

Query: 126 SALVSGLIQ----NGEL---DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
               + L++      EL    E   +LVK G   D     + A   L   Y +  +V EA
Sbjct: 135 VYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLD-----LFAMTGLENMYAKCRQVNEA 189

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-SWN 237
           RK+FD++P            +R++VSWN+++  Y++ G    A E+ + M E +   S+ 
Sbjct: 190 RKVFDRMP------------ERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFI 237

Query: 238 TMIS-----GYIHVLDMEEASNLFVKMPHPDTLT--WNAMVSGYAQIGNLELALDFFKRM 290
           T++S       + ++ + +  + +      D+L     A+V  YA+ G+LE A   F  M
Sbjct: 238 TIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM 297

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
            ++N+VSWNSMI     N++ + A+ +F +M  EG KP   +    L   + + DL  G 
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357

Query: 351 QIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            IH++  +  +  +V + N+LI+MY +C  +  A  +F +++  + +VSWNAMI G A +
Sbjct: 358 FIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQ-SRTLVSWNAMILGFAQN 416

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G   +AL  F  MRS  V P   T++SV++A A   +    +     +V    ++  +  
Sbjct: 417 GRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKW-IHGVVMRSCLDKNVFV 475

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
             +LVD+  + G +  A  LI  M  E     W A++     H
Sbjct: 476 TTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTH 517


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 191/655 (29%), Positives = 315/655 (48%), Gaps = 97/655 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI    +R ++ +AR+L D+MP R+  S +++ISGY+ S   G L  AR +FD   ER  
Sbjct: 49  MIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKS---GNLTVARRIFDDTDERTV 105

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM----PARNVVSW---------------------- 94
           V W T+I  Y+K+    +A +LF  M       + V++                      
Sbjct: 106 VAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQ 165

Query: 95  -------------NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                        N ++  + + G + +A   F  M G DS S + +++G   NG  +EA
Sbjct: 166 IVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEA 225

Query: 142 ARVLVKCGSRCDGGEDLVRAY---------------------------------NTLIVG 168
             + V+  +      D   A                                  N  +  
Sbjct: 226 IELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDF 285

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y +   V E RKLF+++P            + + VS+N +I  YA  G V  + ++F+++
Sbjct: 286 YSKHDCVNEVRKLFNEMP------------ELDGVSYNVIITAYAWVGKVKESIDLFQEL 333

Query: 229 ----LERDTFSWNTMISGYIHVLDMEEASNLF----VKMPHPDTLTWNAMVSGYAQIGNL 280
                +R  F + TM+S     LD++    L     V M  PD    N++V  YA+ G  
Sbjct: 334 QFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKF 393

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           E A   F R+  ++ V W +MI+       +E  +KLF +M+      D+ TF+ +L  S
Sbjct: 394 EEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKAS 453

Query: 341 SGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
           + +  + LG Q+H  V ++   +V    AL+ MYA C +I +A   FEEM   +NVV+WN
Sbjct: 454 ANLASILLGKQLHSCVIRSGFMNVYSGCALLDMYANCASIKDAIKTFEEMSE-RNVVTWN 512

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           A++   A +G     L+ F+ M      P  ++F+ +L+AC+H  LVEEG ++F  M   
Sbjct: 513 ALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGV 572

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           Y + P+ EH+ ++VD + R GR ++A  L+  MPFEPD+ VW ++L +CR+H N  LA+ 
Sbjct: 573 YNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARK 632

Query: 521 AAEALMKVEP-ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           AA  L  ++   ++ PYV + N++A+ G+WD   +V+  M+   ++K   YSWV+
Sbjct: 633 AAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVE 687



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 175/374 (46%), Gaps = 56/374 (14%)

Query: 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
           G + +   +N +I    +RG++ +AR+L D++P             RN  S + +I  Y 
Sbjct: 38  GFDPITSRFNFMIKDLSERGQLCQARQLLDQMP------------NRNSFSIDIIISGYV 85

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW-- 267
           K+G++  AR IF+   ER   +W TMI  Y       +A  LF +M      PD +T+  
Sbjct: 86  KSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYIT 145

Query: 268 ---------------------------------NAMVSGYAQIGNLELALDFFKRMPQKN 294
                                            N ++  Y + G L+ A   F  M   +
Sbjct: 146 LLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWD 205

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
            VS+N MI G   N   E AI+LF++MQ  G KP   TF++++S S G+ D   G QIH 
Sbjct: 206 SVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHG 265

Query: 355 MVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
            V KT  I +V + NA +  Y++   + E R +F EM  L   VS+N +I   A  G   
Sbjct: 266 FVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDG-VSYNVIITAYAWVGKVK 324

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFAS 472
           E+++LF+ ++          F ++LS  A +  ++ GRQ H + +V+    + R+ +  S
Sbjct: 325 ESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSN--S 382

Query: 473 LVDIVGRHGRLEDA 486
           LVD+  + G+ E+A
Sbjct: 383 LVDMYAKCGKFEEA 396



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 133/280 (47%), Gaps = 10/280 (3%)

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           T  +N MI        + +A  L  +MP+ ++ + + ++SGY + GNL +A   F    +
Sbjct: 43  TSRFNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDE 102

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           + +V+W +MI     +  +  A KLF +M   G +PD  T+ ++L   +G  DL +  ++
Sbjct: 103 RTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLL---TGCNDLEVAKEL 159

Query: 353 HQMVTKTVIPDVPIN----NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           +Q   + V     +N    N L+  Y + G +  AR +F EM    + VS+N MI G A+
Sbjct: 160 YQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEM-CGWDSVSFNVMITGYAN 218

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           +G   EA+ELF  M++    P+  TF +V+SA         G+Q    +V    I     
Sbjct: 219 NGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFV 278

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
             A  +D   +H  + +   L   MP E D   +  ++ A
Sbjct: 279 GNA-FLDFYSKHDCVNEVRKLFNEMP-ELDGVSYNVIITA 316


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 177/540 (32%), Positives = 279/540 (51%), Gaps = 41/540 (7%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM- 117
           D +  N +I  YAK GE+  A  +F  MP RNVVSW A++ GFL++GD    +     M 
Sbjct: 38  DTMLGNNLIDMYAKCGELRMAGEVFGGMPERNVVSWTALMVGFLRHGDARECLRLLGAMR 97

Query: 118 ------PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
                 P   + S S    G++     D AA V +       G E      N+L++ Y +
Sbjct: 98  SLSDVAPNEFTLSASLKACGVVG----DMAAGVWIHGACVRAGFEGHHVVANSLVLLYSK 153

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            GR+ +AR++FD                RN+V+WN+MI  YA AG    +  +F +M +R
Sbjct: 154 GGRIGDARRVFDGTVF------------RNLVTWNAMISGYAHAGHGRDSLLVFREMQQR 201

Query: 232 ---------DTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTLTWNAMVSGYAQ 276
                    D F++ +++     +    E + +   M         + +   A++  Y +
Sbjct: 202 RQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVK 261

Query: 277 IGNL-ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
              L  +A+  F R+ QKN + W ++I G       + A++LF +    G + D H  SS
Sbjct: 262 CRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSS 321

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           ++ + +    +  G Q+H    KT    DV + N+LI MY +CG   EA   F E+   +
Sbjct: 322 VVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPA-R 380

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           NVVSW AMI G   HG   EA+ +F+ MR+  V P  + ++++LSAC+H+GLVEE R++F
Sbjct: 381 NVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYF 440

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
            ++ ++  + PR EH+A +VD++GR G L +A DL+  MP  P   VW  LL ACRVH N
Sbjct: 441 SAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSACRVHKN 500

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           V + + A E L+ ++ +N   YV+L N++A+ G W +   VR  M+   ++K  G SWV+
Sbjct: 501 VTVGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRGAMRRRGLRKQGGCSWVE 560



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 111/491 (22%), Positives = 202/491 (41%), Gaps = 93/491 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS----GFLEEARYLFDIMP 56
           +I  Y K  E+  A ++F  MP+R+VVSW  ++ G++    +      L   R L D+ P
Sbjct: 45  LIDMYAKCGELRMAGEVFGGMPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAP 104

Query: 57  ---------------------------------ERDCVTWNTVISGYAKTGEMEEALRLF 83
                                            E   V  N+++  Y+K G + +A R+F
Sbjct: 105 NEFTLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVF 164

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---------DSASLSALVSGLIQ 134
           +    RN+V+WNAMISG+   G   +++  F  M  R         D  + ++L+     
Sbjct: 165 DGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGS 224

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG------YGQRGRVEEARKLFDKIPVN 188
            G   E A+V      R      +  A N ++ G         R  +  A ++F+++   
Sbjct: 225 LGAAREGAQVHAAMVIR-----GVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLE-- 277

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                     ++N + W ++I+ +A+ G V  A E+F +        W++ +    HVL 
Sbjct: 278 ----------QKNAIQWTTVIVGHAQEGQVKEAMELFGRF-------WSSGVRADGHVLS 320

Query: 249 -----------MEEASNLF---VKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
                      +E+   +    VK P   D    N+++  Y + G  + A   F+ +P +
Sbjct: 321 SVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPAR 380

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQ 351
           N+VSW +MI G   +   + AI +F +M+ EG +PD   + ++LS    SG+V+      
Sbjct: 381 NVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYF 440

Query: 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
                 + + P       ++ +  R G + EA+ +   M +   V  W  ++  C  H  
Sbjct: 441 SAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSACRVHKN 500

Query: 412 ATEALELFKSM 422
            T   E  +++
Sbjct: 501 VTVGREAGETL 511


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 192/618 (31%), Positives = 323/618 (52%), Gaps = 70/618 (11%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP----ERDCVTWNTV 66
           + +AR++FD +  + VV+WN +I+GY      G ++EA  LF  M     E   +T+ +V
Sbjct: 108 VTEARQIFDSVENKTVVTWNALIAGYAQV---GHVKEAFALFRQMVDEGLEPSIITFLSV 164

Query: 67  -----------------------------------ISGYAKTGEMEEALRLFNSMPARNV 91
                                              +S Y K G M++A ++F+ +  R+V
Sbjct: 165 LDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDV 224

Query: 92  VSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEAARVLVK 147
            ++N M+ G+ ++GD   A E F RM       +  S  +++ G      L     V  +
Sbjct: 225 STFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQ 284

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
           C +   G  D +R   +LI  Y   G +E AR++FD + V            R++VSW  
Sbjct: 285 CMNA--GLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKV------------RDVVSWTV 330

Query: 208 MIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMP--- 260
           MI  YA+ G++  A  +F  M E     D  ++  +++      ++  A  +  ++    
Sbjct: 331 MIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAG 390

Query: 261 -HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
              D L   A+V  YA+ G ++ A   F  MP++++VSW++MI     N     A + F 
Sbjct: 391 FGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFH 450

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCG 378
            M+    +PD  T+ ++L+    +  L +GM+I+ Q +   ++  VP+ NALI M A+ G
Sbjct: 451 LMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHG 510

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
           ++  AR IF+ M + ++V++WNAMIGG + HG A EAL LF  M   +  P  +TF+ VL
Sbjct: 511 SVERARYIFDTM-VRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVL 569

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           SAC+ AG V+EGR+ F  ++   GI P ++ +  +VD++GR G L++A  LIK MP +P 
Sbjct: 570 SACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPT 629

Query: 499 KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558
            ++W +LL ACR+H N+++A+ AAE  + ++P +   YV L +MYA  G W++  +VR +
Sbjct: 630 SSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKV 689

Query: 559 MKSNNIKKPTGYSWVDFS 576
           M+S  I+K  G +W++ +
Sbjct: 690 MESRGIRKEQGCTWIEVA 707



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 125/418 (29%), Positives = 202/418 (48%), Gaps = 36/418 (8%)

Query: 154 GGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
           GG  L +   NTLI  Y   G V EAR++FD +              + +V+WN++I  Y
Sbjct: 86  GGRQLNIYELNTLIKLYSICGNVTEARQIFDSVE------------NKTVVTWNALIAGY 133

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM--EEASNLFVKMPHPDTLT---- 266
           A+ G V  A  +F QM++         I  ++ VLD     A   + K  H   +T    
Sbjct: 134 AQVGHVKEAFALFRQMVDE---GLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFV 190

Query: 267 -----WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
                  A+VS Y + G+++ A   F  +  +++ ++N M+ G   + D+E A +LF +M
Sbjct: 191 SDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRM 250

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAI 380
           Q  G KP++ +F SIL        L  G  +H Q +   ++ D+ +  +LI MY  CG+I
Sbjct: 251 QQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSI 310

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
             AR +F+ MK +++VVSW  MI G A +G   +A  LF +M+   + P  IT++ +++A
Sbjct: 311 EGARRVFDNMK-VRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNA 369

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           CA +  +   R+   S V+  G    +    +LV +  + G ++DA  +   MP   D  
Sbjct: 370 CAISANLNHARE-IHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMP-RRDVV 427

Query: 501 VWGALLGACRVHNNVELAQVAAEALMK---VEPENSTPYVLLYNMYADVGRWDDANEV 555
            W A++GA  V N           LMK   +EP+  T Y+ L N    +G  D   E+
Sbjct: 428 SWSAMIGA-YVENGYGTEAFETFHLMKRSNIEPDGVT-YINLLNACGHLGALDVGMEI 483


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 207/710 (29%), Positives = 332/710 (46%), Gaps = 137/710 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY---------------ISSRG---- 41
           M++ YV   +   A  LF  MP  DVVSWN +ISGY               +S RG    
Sbjct: 91  MLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALD 150

Query: 42  ----------SGFLEEARYLFDIMP-------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                      G L++      I         E D    + ++  Y K   +++ALR F+
Sbjct: 151 RTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFH 210

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRM---------PGRDSASLSALVSGLIQN 135
            M  RN VSW A I+G +QN      +E F +M         P   SA  S      +  
Sbjct: 211 GMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLST 270

Query: 136 GELDEA-----------------ARVLVKCGSRCDGGEDL-------VRAYNTLIVGYGQ 171
                A                   V  K G+  D            V   N ++VG  +
Sbjct: 271 ARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVR 330

Query: 172 RGRVEEARKL----------FDKIPVN-----CDRGEGNVR------------FKRNIVS 204
            G   EA +L          FD I ++     C   +G  +            F  ++  
Sbjct: 331 TGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCV 390

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP---- 260
            N+++  Y K   +V A  +F++M +RD+ SWN +I+        E+      +M     
Sbjct: 391 RNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGM 450

Query: 261 HPDTLTWNAMVSGYAQIGNLE-------------LALDFF-------------------- 287
            PD  T+ +++   A + +LE             L LD F                    
Sbjct: 451 EPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQK 510

Query: 288 --KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
              R+  + LVSWNS+I+G    K  E A + F +M   G KPD  T++++L   + +  
Sbjct: 511 LHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLAT 570

Query: 346 LHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           + LG QIH Q++ + ++ D  I++ L+ MYA+CG + ++ ++FE+ + L + VSWNAMI 
Sbjct: 571 IELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKL-DFVSWNAMIC 629

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           G A HG   EALE+F+ M+   V+P + TF++VL AC+H GL+++G Q+F  M + Y + 
Sbjct: 630 GYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRYKLV 689

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           P++EHFA +VDI+GR    ++A++ I+ MP E D  VW  LL  C++  +VE+A+ AA  
Sbjct: 690 PQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEVAETAASN 749

Query: 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +++++P++++ Y+LL N+YA  G+W D +  R LM+   ++K  G SW++
Sbjct: 750 VLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSWIE 799



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 158/594 (26%), Positives = 257/594 (43%), Gaps = 74/594 (12%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           + A AR L         VS N ++  Y    G+     A  +FD MP RD V+WNT+++ 
Sbjct: 39  QAAHARMLVSGFMPTTFVS-NCLLQMYARCGGTA---HAHGVFDTMPHRDTVSWNTMLTA 94

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           Y   G+ + A  LF +MP  +VVSWN +ISG+ Q+G   N++     M  R  A     +
Sbjct: 95  YVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTL 154

Query: 130 SGLIQN-GELDEAAR-VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV 187
           + L+++ G LD+ A  V +   +   G E  VRA + L+  YG+   +++A + F     
Sbjct: 155 AVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFF----- 209

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT-FSWNTMISGYIHV 246
               G G    +RN VSW + I    +        E+F QM       S     S +   
Sbjct: 210 ---HGMG----ERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSC 262

Query: 247 LDMEEASNLFVKMPHP-------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
             M   S       H        D +   A+V  YA+ GNL  A   F  +P  N+ + N
Sbjct: 263 AAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCN 322

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           +M+ G         A++LF  M   G   D  + S + S  + +     G+Q+H +  K+
Sbjct: 323 AMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKS 382

Query: 360 VIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
               DV + NA++ +Y +C A+VEA ++F+EM+  ++ VSWNA+I     +    + +  
Sbjct: 383 GFDVDVCVRNAILDLYGKCKALVEAYLVFQEME-QRDSVSWNAIIAALEQNECYEDTIAH 441

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGR-QHFKSMVNEYGIEPRIEHFASLVDIV 477
              M    + P   T+ SVL ACA    +E G   H K++ +  G++  +   +++VD+ 
Sbjct: 442 LNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVS--STVVDMY 499

Query: 478 GRHGRLEDAMDL---------------IKG-------------------MPFEPDKAVWG 503
            + G + +A  L               I G                   M  +PD   + 
Sbjct: 500 CKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYA 559

Query: 504 ALLGACRVHNNVEL-----AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
            +L  C     +EL      Q+  + ++  E  +ST    L +MYA  G   D+
Sbjct: 560 TVLDTCANLATIELGKQIHGQIIKQEMLGDEYISST----LVDMYAKCGNMPDS 609



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 87/211 (41%), Gaps = 35/211 (16%)

Query: 332 TFSSI--LSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFE 388
           TFS +  L  S+G   L  G   H +M+    +P   ++N L+ MYARCG    A  +F+
Sbjct: 19  TFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFD 78

Query: 389 EM---------KLLK---------------------NVVSWNAMIGGCASHGFATEALEL 418
            M          +L                      +VVSWN +I G   HG    ++ L
Sbjct: 79  TMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGL 138

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
              M    V     T   +L +C     +  G Q   ++  + G+E  +   ++LVD+ G
Sbjct: 139 SMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQ-IHALAVKTGLETDVRAGSALVDMYG 197

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           +   L+DA+    GM  E +   WGA +  C
Sbjct: 198 KCRSLDDALRFFHGMG-ERNSVSWGAAIAGC 227


>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
          Length = 696

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 206/628 (32%), Positives = 317/628 (50%), Gaps = 89/628 (14%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG- 69
           +A AR++FDE+P+RD VSWN +++ + +S   G   EA  L   M  +   + NT   G 
Sbjct: 43  LAAARRVFDEVPRRDEVSWNALLAAHAAS---GAHPEAWRLLRAMHAQGLAS-NTFALGS 98

Query: 70  ---------------------------------------YAKTGEMEEALRLFNSMPARN 90
                                                  YAK G + +A ++F+ MP RN
Sbjct: 99  ALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERN 158

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNG--ELDEAARV 144
            VSWNA+I+G+ ++GD+A+A+E F  M       D A+ ++L++ +       + +    
Sbjct: 159 TVSWNALIAGYTESGDMASALELFLEMEREGLVPDEATFASLLTAVEGPSCFLMHQLHGK 218

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
           +VK GS        +   N  I  Y Q G ++++R++FD I        G++R   +++S
Sbjct: 219 IVKYGSALG-----LTVLNAAITAYSQCGSLKDSRRIFDGI--------GDIR---DLIS 262

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLER-----DTFSWNTMISG------------YIHVL 247
           WN+M+  Y   G    A + F +M++      D +S+ ++IS              IH L
Sbjct: 263 WNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGL 322

Query: 248 DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
            ++ A    ++   P      AM + Y +   +E A   F  +  K+ VSWNSM+ G   
Sbjct: 323 VIKSA----LEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQ 378

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPI 366
           +     A+K F  M  E  + D + FS+ L  SS +  L LG QIH +V  +    +  +
Sbjct: 379 HGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFV 438

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
           +++LI MY++ G I +AR  FEE     + V WNAMI G A HG A     LF  M   K
Sbjct: 439 SSSLIFMYSKSGIIDDARKSFEEADK-SSSVPWNAMIFGYAQHGQAENVDILFNEMLQRK 497

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
               +ITF+ ++++C+HAGLV+EG +   +M  +YG+  R+EH+A  VD+ GR G+L+ A
Sbjct: 498 APLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKA 557

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
             LI  MPFEPD  VW  LLGACR+H NVELA   A  L   EP   + YVLL +MY+ +
Sbjct: 558 KKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGL 617

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           G W D   V+ +MK   + K  G+S ++
Sbjct: 618 GMWSDRATVQRVMKKRGLSKVPGWSLIE 645



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 141/519 (27%), Positives = 236/519 (45%), Gaps = 67/519 (12%)

Query: 94  WNAMISGFLQNG--DVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSR 151
           WN +++ + ++    +A A   FD +P RD  S +AL++    +G   EA R+L     R
Sbjct: 28  WNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAHAASGAHPEAWRLL-----R 82

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
               + L  A NT  +G   R      R        +     G      N+ + ++++  
Sbjct: 83  AMHAQGL--ASNTFALGSALRSAAVARRPAIGAQLQSLALKSG---LANNVFAASALLDV 137

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW 267
           YAK G V  AR++F+ M ER+T SWN +I+GY    DM  A  LF++M      PD  T+
Sbjct: 138 YAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVPDEATF 197

Query: 268 ----------------------------------NAMVSGYAQIGNLELALDFFKRMPQ- 292
                                             NA ++ Y+Q G+L+ +   F  +   
Sbjct: 198 ASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDI 257

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQ-MQVEGEKPDRHTFSSIL-SMSSGIVDLHLGM 350
           ++L+SWN+M+     N   + A+K F++ MQ  G  PD ++F+SI+ S S    D H G 
Sbjct: 258 RDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGR 317

Query: 351 QIHQMVTKTVIPDV-PINNALITMYARCGA---IVEARIIFEEMKLLKNVVSWNAMIGGC 406
            IH +V K+ +  V P+ NALI MY R      + +A   F  + +LK+ VSWN+M+ G 
Sbjct: 318 VIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSL-VLKDTVSWNSMLTGY 376

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
           + HG + +AL+ F+ M S  V      F + L + +   +++ G+Q    +V   G    
Sbjct: 377 SQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQ-IHGLVIHSGFASN 435

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV---WGALLGACRVHNNVELAQVA-A 522
               +SL+ +  + G ++DA    +    E DK+    W A++     H   E   +   
Sbjct: 436 DFVSSSLIFMYSKSGIIDDARKSFE----EADKSSSVPWNAMIFGYAQHGQAENVDILFN 491

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
           E L +  P +   +V L    +  G  D+ +E+   M++
Sbjct: 492 EMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMET 530



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 117/470 (24%), Positives = 203/470 (43%), Gaps = 87/470 (18%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-----FLE---------EARY 50
           Y K   +  AR++FD MP+R+ VSWN +I+GY  S         FLE         EA +
Sbjct: 138 YAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVPDEATF 197

Query: 51  --LFDIMPERDC-------------------VTWNTVISGYAKTGEMEEALRLFNSM-PA 88
             L   +    C                      N  I+ Y++ G ++++ R+F+ +   
Sbjct: 198 ASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDI 257

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELDEAAR 143
           R+++SWNAM+  +  NG    A++FF RM        D  S ++++S   ++G  D   R
Sbjct: 258 RDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGR 317

Query: 144 VL--VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
           V+  +   S  +G   +  A   +   Y +   +E+A K F+ + +            ++
Sbjct: 318 VIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVL------------KD 365

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERD------TFSWNTMISGYIHVLDMEE---- 251
            VSWNSM+  Y++ G    A + F  M   +       FS     S  + VL + +    
Sbjct: 366 TVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHG 425

Query: 252 -------ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
                  ASN FV          ++++  Y++ G ++ A   F+   + + V WN+MI G
Sbjct: 426 LVIHSGFASNDFVS---------SSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFG 476

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQI-HQMVTKTVI 361
              +   E    LF +M       D  TF  +++  S  G+VD   G +I + M TK  +
Sbjct: 477 YAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVD--EGSEILNTMETKYGV 534

Query: 362 PDVPINNAL-ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           P    + A  + +Y R G + +A+ + + M    + + W  ++G C  HG
Sbjct: 535 PLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHG 584



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 12/127 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I  Y K   +  ARK F+E  +   V WN MI GY      G  E    LF+ M +R  
Sbjct: 442 LIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQ---HGQAENVDILFNEMLQRKA 498

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV-----SWNAMISGFLQNGDVANAI 111
             D +T+  +I+  +  G ++E   + N+M  +  V      +   +  + + G +  A 
Sbjct: 499 PLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAK 558

Query: 112 EFFDRMP 118
           +  D MP
Sbjct: 559 KLIDSMP 565


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 178/489 (36%), Positives = 285/489 (58%), Gaps = 22/489 (4%)

Query: 96  AMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGG 155
           +M   +++ G + +A + FDRM  +D  + SAL+    + G L+E  R+L +  S   G 
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMES--SGI 213

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
           E  + ++N ++ G+ + G  +EA  +F KI         ++ F  + V+ +S++     +
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIH--------HLGFCPDQVTVSSVLPSVGDS 265

Query: 216 GDVVSAREI----FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMV 271
             +   R I     +Q L +D    + MI  Y     +    +LF +    +    NA +
Sbjct: 266 EMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYI 325

Query: 272 SGYAQIGNLELALDFFKRMPQK----NLVSWNSMIAGCETN-KDYEGAIKLFIQMQVEGE 326
           +G ++ G ++ AL+ F+   ++    N+VSW S+IAGC  N KD E A++LF +MQV G 
Sbjct: 326 TGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIE-ALELFREMQVAGV 384

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARI 385
           KP+  T  S+L     I  L  G   H    +  ++ +V + +ALI MYA+CG I  ++I
Sbjct: 385 KPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQI 444

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F  M   KN+V WN+++ G + HG A E + +F+S+   ++ P +I+F S+LSAC   G
Sbjct: 445 VFNMMPT-KNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVG 503

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           L +EG ++FK M  EYGI+PR+EH++ +V+++GR G+L++A DLIK MPFEPD  VWGAL
Sbjct: 504 LTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGAL 563

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           L +CR+ NNV+LA++AAE L  +EPEN   YVLL N+YA  G W + + +R  M+S  +K
Sbjct: 564 LNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLK 623

Query: 566 KPTGYSWVD 574
           K  G SW+ 
Sbjct: 624 KNPGCSWIQ 632



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 188/428 (43%), Gaps = 39/428 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           M   Y++   M  ARK+FD M  +DVV+ + ++  Y      G LEE   +   M     
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYAR---KGCLEEVVRILSEMESSGI 213

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E + V+WN ++SG+ ++G  +EA+ +F  +           +S  L +   +  +     
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273

Query: 117 MPG--------RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           + G        +D   +SA++    ++G +     +  +      G        N  I G
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAG------VCNAYITG 327

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
             + G V++A ++F+               + N+VSW S+I   A+ G  + A E+F +M
Sbjct: 328 LSRNGLVDKALEMFELFKEQ--------TMELNVVSWTSIIAGCAQNGKDIEALELFREM 379

Query: 229 ----LERDTFSWNTMI--SGYIHVLDMEEASNLFVKMPH--PDTLTWNAMVSGYAQIGNL 280
               ++ +  +  +M+   G I  L    +++ F    H   +    +A++  YA+ G +
Sbjct: 380 QVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRI 439

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
            L+   F  MP KNLV WNS++ G   +   +  + +F  +     KPD  +F+S+LS  
Sbjct: 440 NLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSAC 499

Query: 341 SGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
             +     G +  +M+++   + P +   + ++ +  R G + EA  + +EM    +   
Sbjct: 500 GQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCV 559

Query: 399 WNAMIGGC 406
           W A++  C
Sbjct: 560 WGALLNSC 567



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 149/361 (41%), Gaps = 65/361 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           MI  Y K   +     LF++    +    N  I+G   SR +G +++A  +F++  E+  
Sbjct: 293 MIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGL--SR-NGLVDKALEMFELFKEQTM 349

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
             + V+W ++I+G A+ G+  EAL LF  M    V   +  I   L              
Sbjct: 350 ELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML-------------- 395

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            P     +++AL  G   +G    A RV +          D V   + LI  Y + GR+ 
Sbjct: 396 -PA--CGNIAALGHGRSTHG---FAVRVHLL---------DNVHVGSALIDMYAKCGRIN 440

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERD 232
            ++ +F+ +P             +N+V WNS++  ++  G       IFE +    L+ D
Sbjct: 441 LSQIVFNMMPT------------KNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPD 488

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFF 287
             S+ +++S    V   +E    F  M       P    ++ MV+   + G L+ A D  
Sbjct: 489 FISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLI 548

Query: 288 KRMP-QKNLVSWNSMIAGCETNKDYE----GAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           K MP + +   W +++  C    + +     A KLF    +E E P  +   S +  + G
Sbjct: 549 KEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLF---HLEPENPGTYVLLSNIYAAKG 605

Query: 343 I 343
           +
Sbjct: 606 M 606


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 201/627 (32%), Positives = 330/627 (52%), Gaps = 76/627 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEAR----------- 49
           +++ Y  R   A AR++FDEMP RD+VSWN ++S  +++   G LE+A+           
Sbjct: 153 LVTFYAARGRAADARRVFDEMPARDIVSWNSLVSALLTN---GMLEDAKRAVVGMMRSGI 209

Query: 50  -----YLFDIMP----ERD-------------------CVTWNTVISGYAKTGEMEEALR 81
                 L  ++P    ERD                       N ++  Y K G++E ++R
Sbjct: 210 PVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMR 269

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVSGLIQN 135
           +FN M  +N VSWN+ +  F   G   + +E F  M      PG  S +LS+L+  L+  
Sbjct: 270 VFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPG--SVTLSSLLPALVDL 327

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           G       V      R    E  +   N+L+  Y + G +E+A  +F+ I       EG 
Sbjct: 328 GYFHLGKEVHGYSIRR--AMESDIFIANSLMDMYAKFGCLEKASAIFENI-------EG- 377

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEE 251
               RN+VSWN+MI   A+ G    A  +  +M +     ++F+   ++     V  ++ 
Sbjct: 378 ----RNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKM 433

Query: 252 ASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
              +     H     D    NA++  YA+ G L +A D F R  +K+ VS+N++I G   
Sbjct: 434 GKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDR-SEKDDVSYNTLIVGYSQ 492

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-I 366
           ++    ++ LF QM+  G + D  +F   LS  + +     G +IH ++ + ++   P +
Sbjct: 493 SQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHPFL 552

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            N+L+ +Y + G +  A  IF  +   K+V SWN MI G   HG    A ELF  M+   
Sbjct: 553 ANSLLDLYTKGGMLATASKIFNRITR-KDVASWNTMILGYGMHGQIDVAFELFDLMKDDG 611

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           V   ++++I+VLSAC+H GLV+ G+++F  M+ +  I+P+  H+A +VD++GR G+L ++
Sbjct: 612 VDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIAQ-NIKPQQMHYACMVDLLGRAGQLSES 670

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
           +++I  MPF  +  VWGALLG+CR+H ++ELA++AAE L +++PE+S  Y LL NMY++ 
Sbjct: 671 VEIITNMPFPANSDVWGALLGSCRIHGDIELARLAAEHLFELKPEHSGYYTLLRNMYSES 730

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWV 573
           G W++ANE++ LMKS  ++K   YSWV
Sbjct: 731 GMWNEANEIKTLMKSRKVQKNPAYSWV 757



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 138/473 (29%), Positives = 235/473 (49%), Gaps = 31/473 (6%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIE-FFDRM 117
           D    NT+++ YA  G   +A R+F+ MPAR++VSWN+++S  L NG + +A       M
Sbjct: 146 DVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSALLTNGMLEDAKRAVVGMM 205

Query: 118 PGRDSASLSALVSGLIQNG-ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
                 ++++LVS +   G E DE   + V       G + +V   N L+  YG+ G +E
Sbjct: 206 RSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLE 265

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            + ++F+ +             ++N VSWNS + C+A AG      E+F  M E +    
Sbjct: 266 SSMRVFNGMQ------------EKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPG 313

Query: 237 NTMIS---------GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
           +  +S         GY H L  E       +    D    N+++  YA+ G LE A   F
Sbjct: 314 SVTLSSLLPALVDLGYFH-LGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIF 372

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
           + +  +N+VSWN+MIA    N     A  L I+MQ  GE P+  T  ++L   S +  + 
Sbjct: 373 ENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVK 432

Query: 348 LGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           +G QIH   + ++++ D+ ++NALI +YA+CG +  A+ IF+  +  K+ VS+N +I G 
Sbjct: 433 MGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDRSE--KDDVSYNTLIVGY 490

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE-YGIEP 465
           +      E+L LF+ MRS  +    ++F+  LSACA+    ++G++    +V       P
Sbjct: 491 SQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHP 550

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            + +  SL+D+  + G L  A  +   +    D A W  ++    +H  +++A
Sbjct: 551 FLAN--SLLDLYTKGGMLATASKIFNRIT-RKDVASWNTMILGYGMHGQIDVA 600



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 148/353 (41%), Gaps = 87/353 (24%)

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
           G  + A  +   +L  D F+ NT+++ Y       +A  +F +MP  D ++WN++VS   
Sbjct: 130 GAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSALL 189

Query: 276 QIGNLELA----LDFFKRMPQKNLVSWNSMIAGCETNK---------------------- 309
             G LE A    +   +     N+ S  S++  C T +                      
Sbjct: 190 TNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVN 249

Query: 310 -------------DYEGAIKLFIQMQVEGE------------------------------ 326
                        D E ++++F  MQ + E                              
Sbjct: 250 LGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHE 309

Query: 327 -KPDRHTFSSILSMSSGIVDL---HLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIV 381
             P   T SS+L     +VDL   HLG ++H   + + +  D+ I N+L+ MYA+ G + 
Sbjct: 310 VTPGSVTLSSLL---PALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLE 366

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
           +A  IFE ++  +NVVSWNAMI   A +G  TEA  L   M+     P   T +++L AC
Sbjct: 367 KASAIFENIE-GRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPAC 425

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRI--EHFAS--LVDIVGRHGRLEDAMDLI 490
           +    V+ G+Q     ++ + I   +  + F S  L+D+  + G+L  A D+ 
Sbjct: 426 SRVASVKMGKQ-----IHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIF 473



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKL-LKNVVSWNAMIGGCASHGFAT 413
           +V+  +   +P+  AL+  YA    I  AR+I     L L++   WN++    AS G  +
Sbjct: 29  LVSGALTASLPLAGALLLSYAALRDIPSARLILRHHPLRLRSAFLWNSLSRALASAGLPS 88

Query: 414 EALELFKSMRSFKVLPTYITF 434
           EAL ++  M    V P   TF
Sbjct: 89  EALRVYNCMVRSGVRPDDRTF 109


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 188/593 (31%), Positives = 301/593 (50%), Gaps = 81/593 (13%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD-------------- 59
           A  +F +MPQR++ SW  ++S ++     G+ EEA  LF+ +   D              
Sbjct: 113 ANLVFVKMPQRNLYSWTAILSVHVDH---GYFEEALSLFEKLQLDDIGLEFFVFPVVLKL 169

Query: 60  CVTWNTVISG-------YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIE 112
           C     +  G         +  +M  AL++F+    +NVVS+N MI G+ +NG+V  A E
Sbjct: 170 CGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKE 229

Query: 113 FFDRMP--GRDSASLSALVSGLIQNGELDEAAR----VLVKCGSRCDGGEDLVRAYNTLI 166
            FD+M   G+D+ S ++++SG   N   DEA      +L++ G   D          +++
Sbjct: 230 LFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADS-----FTLGSVL 284

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
                   +   +++  +  V   RG        N     +++  Y+K  D+ +A+  F+
Sbjct: 285 AACADMASLRRGKEVHAQAVV---RG-----LHWNTFVGGALVEMYSKCEDLKAAQLAFD 336

Query: 227 QMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLEL 282
            + ERDT +WN +ISGY     +E   NL  KM      P+  TWN ++SG+ + G+ EL
Sbjct: 337 GVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNEL 396

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           AL                               +LF +MQ    +PD +T   IL   + 
Sbjct: 397 AL-------------------------------RLFTEMQTSSLRPDIYTVGIILPACAR 425

Query: 343 IVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  +  G Q+H   + +    DV I  AL+ MYA+CG+I  A  ++  +    N+VS NA
Sbjct: 426 LATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRIS-NPNLVSQNA 484

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           M+   A HG   E + LF++M      P ++TF+SVLS+C HAG VE G + F  M   Y
Sbjct: 485 MLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMT-YY 543

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
            + P ++H+  +VD++ R GRL++A +L+K +P +PD  +WGALLG C +  NVEL ++A
Sbjct: 544 NVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIA 603

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           AE+L+++EP N+  YVLL N+YA  GRW D +  R ++K   + K  G SW++
Sbjct: 604 AESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIE 656



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 194/432 (44%), Gaps = 49/432 (11%)

Query: 2   ISGYVKRR--EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--E 57
           + G V +R  +M  A K+F     ++VVS+N MI GY  +   G +E+A+ LFD M    
Sbjct: 182 LHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCEN---GNVEKAKELFDQMELVG 238

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           +D ++WN++ISGYA     +EAL +F     R+++    + +     G V  A      +
Sbjct: 239 KDTISWNSMISGYADNLLFDEALSMF-----RDLLMEEGIEADSFTLGSVLAACADMASL 293

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA--------------YN 163
                    A+V GL  N  +  A   LV+  S+C   EDL  A              +N
Sbjct: 294 RRGKEVHAQAVVRGLHWNTFVGGA---LVEMYSKC---EDLKAAQLAFDGVTERDTATWN 347

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
            LI GY    ++E  + L  K+     +G+G   F+ N+ +WN +I  + + G    A  
Sbjct: 348 VLISGYACCNQLENIQNLIQKM-----KGDG---FEPNVYTWNGIISGHVENGHNELALR 399

Query: 224 IFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP----DTLTWNAMVSGYA 275
           +F +M    L  D ++   ++     +  +     +           D     A+V  YA
Sbjct: 400 LFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYA 459

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           + G+++ A+  + R+   NLVS N+M+     +   +  I LF  M   G +PD  TF S
Sbjct: 460 KCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLS 519

Query: 336 ILSMSSGIVDLHLGMQIHQMVT-KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +LS       +  G +   ++T   V P +     ++ + +R G + EA  + +++    
Sbjct: 520 VLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKP 579

Query: 395 NVVSWNAMIGGC 406
           + V W A++GGC
Sbjct: 580 DSVMWGALLGGC 591



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 182/410 (44%), Gaps = 75/410 (18%)

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           L+  YG+ G +++A  +F K+P            +RN+ SW +++  +   G    A  +
Sbjct: 100 LLQMYGRFGCLDDANLVFVKMP------------QRNLYSWTAILSVHVDHGYFEEALSL 147

Query: 225 FEQM------LERDTFSWNTMISGYIHVL---------------DMEEASNLFVKMPHPD 263
           FE++      LE   F     + G + VL               DM  A  +F      +
Sbjct: 148 FEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKN 207

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRMP--QKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            +++N M+ GY + GN+E A + F +M    K+ +SWNSMI+G   N  ++ A+ +F  +
Sbjct: 208 VVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDL 267

Query: 322 QV-EGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGA 379
            + EG + D  T  S+L+  + +  L  G ++H Q V + +  +  +  AL+ MY++C  
Sbjct: 268 LMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCED 327

Query: 380 IVEARIIF-------------------------------EEMK---LLKNVVSWNAMIGG 405
           +  A++ F                               ++MK      NV +WN +I G
Sbjct: 328 LKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISG 387

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIE 464
              +G    AL LF  M++  + P   T   +L ACA    +  G+Q H  S+   Y ++
Sbjct: 388 HVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELD 447

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
             I   A+LVD+  + G ++ AM +   +   P+     A+L A  +H +
Sbjct: 448 VHIG--AALVDMYAKCGSIKHAMQVYNRIS-NPNLVSQNAMLTAYAMHGH 494



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 132/318 (41%), Gaps = 57/318 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y K  ++  A+  FD + +RD  +WNV+ISGY        LE  + L   M     
Sbjct: 318 LVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQ---LENIQNLIQKMKGDGF 374

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E +  TWN +ISG+ + G  E ALRLF  M   ++   +    G +              
Sbjct: 375 EPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRP-DIYTVGII-------------- 419

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           +P    A L+ +  G              V   S   G E  V     L+  Y + G ++
Sbjct: 420 LPA--CARLATIARG------------KQVHAHSIRQGYELDVHIGAALVDMYAKCGSIK 465

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERD 232
            A +++++I               N+VS N+M+  YA  G       +F  ML      D
Sbjct: 466 HAMQVYNRIS------------NPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPD 513

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFK 288
             ++ +++S  +H   +E     F  M +    P    +  +V   ++ G L+ A +  K
Sbjct: 514 HVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVK 573

Query: 289 RMPQK-NLVSWNSMIAGC 305
           ++P+K + V W +++ GC
Sbjct: 574 KIPRKPDSVMWGALLGGC 591



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 5/128 (3%)

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEAR 384
           ++ D  T++S+L        L+LG Q+H    KT       +   L+ MY R G + +A 
Sbjct: 58  KQIDSSTYASLLESCR---TLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDAN 114

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
           ++F +M   +N+ SW A++     HG+  EAL LF+ ++   +   +  F  VL  C   
Sbjct: 115 LVFVKMP-QRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGL 173

Query: 445 GLVEEGRQ 452
            ++E GRQ
Sbjct: 174 RVLELGRQ 181


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 205/617 (33%), Positives = 324/617 (52%), Gaps = 72/617 (11%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISS---RGSGFL------------EEARYLFDIM 55
           +A  R+LF+++ + D+  +NV+I G+  +   + S FL            +   Y F I 
Sbjct: 62  VAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAIS 121

Query: 56  P------ER-----------DCVTWN-----TVISGYAKTGEMEEALRLFNSMPARNVVS 93
                  ER           D V  N      ++  Y K    E A ++F+ MP R+ V 
Sbjct: 122 AASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVL 181

Query: 94  WNAMISGFLQNGDVANAIEFF----DRMPGRDSASLSALVSGLIQNGELDEAARVL-VKC 148
           WN MISGF +N    ++I  F    D     DS +L+ +++ +    EL E    + ++C
Sbjct: 182 WNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAV---AELQEYRLGMGIQC 238

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
            +   G    V     LI  Y + G+  + R LFD+I             + +++S+N+M
Sbjct: 239 LASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQID------------QPDLISYNAM 286

Query: 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI-------HVLDMEEASNLFVKMP- 260
           I  Y    +  SA  +F ++L       ++ + G I       H+       NL +K+  
Sbjct: 287 ISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGI 346

Query: 261 --HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
              P   T  A+ + Y ++  ++ A   F   P+K+L SWN+MI+G   N   + AI LF
Sbjct: 347 ILQPSVST--ALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLF 404

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARC 377
            +M  +   P+  T +SILS  + +  L +G  +H ++ ++ +  +V ++ AL+ MYA+C
Sbjct: 405 QEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKC 463

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G+IVEAR +F+ M + KNVV+WNAMI G   HG   EAL+LF  M    + PT +TF+S+
Sbjct: 464 GSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSI 522

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           L AC+H+GLV EG + F SM N YG +P  EH+A +VDI+GR G+L +A++ I+ MP EP
Sbjct: 523 LYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEP 582

Query: 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
             AVWGALLGAC +H N E+A VA++ L +++PEN   YVLL N+Y+    +  A  VR 
Sbjct: 583 GPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQ 642

Query: 558 LMKSNNIKKPTGYSWVD 574
           ++K   + K  G + ++
Sbjct: 643 VVKKRKLAKTPGCTLIE 659



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/514 (23%), Positives = 227/514 (44%), Gaps = 43/514 (8%)

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM-------PGRDSASLS 126
           G +    +LFN +   ++  +N +I GF  NG   ++I  +  +       P   + + +
Sbjct: 60  GAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFA 119

Query: 127 ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
              +  ++    DE   VL+   S  DG    +   + ++  Y +  R E ARK+FD +P
Sbjct: 120 ISAASRLE----DERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMP 175

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD-TFSWNTMISGYIH 245
                       +R+ V WN+MI  +++      +  +F  ML+   +F   T+ +    
Sbjct: 176 ------------ERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTA 223

Query: 246 VLDMEE----------ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           V +++E          AS    K  H D      ++S Y++ G        F ++ Q +L
Sbjct: 224 VAELQEYRLGMGIQCLASK---KGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDL 280

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           +S+N+MI+G   N + E A+ LF ++   G++ +  T   ++ +      L L   I  +
Sbjct: 281 ISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNL 340

Query: 356 VTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
             K  +I    ++ AL T+Y R   +  AR +F+E    K++ SWNAMI G   +G    
Sbjct: 341 SLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESP-EKSLASWNAMISGYTQNGLTDR 399

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           A+ LF+ M   ++ P  +T  S+LSACA  G +  G+     ++    +E  +    +LV
Sbjct: 400 AISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKW-VHGLIKSERLESNVYVSTALV 457

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH-NNVELAQVAAEALMKVEPENS 533
           D+  + G + +A  L   M  + +   W A++    +H +  E  ++  E L    P   
Sbjct: 458 DMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTG 516

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
             ++ +    +  G   + NE+   M +N   +P
Sbjct: 517 VTFLSILYACSHSGLVSEGNEIFHSMANNYGFQP 550



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 131/492 (26%), Positives = 204/492 (41%), Gaps = 81/492 (16%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---ERDCV 61
           Y K      ARK+FD MP+RD V WN MISG+  SR S F +  R   D++      D  
Sbjct: 158 YFKFTRAELARKVFDVMPERDTVLWNTMISGF--SRNSYFEDSIRVFVDMLDVGLSFDST 215

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAIEFFDR 116
           T  TV++  A+  E    + +   + ++     +V     +IS + + G        FD+
Sbjct: 216 TLATVLTAVAELQEYRLGMGI-QCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQ 274

Query: 117 MPGRDSASLSALVSGLIQNGELDEAA---RVLVKCGSRCDGGE--DLVRAYNTLIVGYGQ 171
           +   D  S +A++SG   N E + A    R L+  G R +      L+  Y  L   + Q
Sbjct: 275 IDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVY--LPFNHLQ 332

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS----MIMCYAKAGDVVSAREIFEQ 227
             R+ +                 N+  K  I+   S    +   Y +  +V  AR++F++
Sbjct: 333 LSRLIQ-----------------NLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDE 375

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVK-MPH--PDTLTWNAMVSGYAQIGNLEL-- 282
             E+   SWN MISGY      + A +LF + MP   P+ +T  +++S  AQ+G L +  
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGK 435

Query: 283 ---------------------------------ALDFFKRMPQKNLVSWNSMIAGCETNK 309
                                            A   F  M  KN+V+WN+MI G   + 
Sbjct: 436 WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHG 495

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI-HQMVTKTVIPDVPINN 368
             + A+KLF +M   G  P   TF SIL   S    +  G +I H M        +  + 
Sbjct: 496 HGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHY 555

Query: 369 A-LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           A ++ +  R G +  A    E M L      W A++G C  H   TE   +  S R F++
Sbjct: 556 ACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHK-NTEMANV-ASKRLFQL 613

Query: 428 LPTYITFISVLS 439
            P  + +  +LS
Sbjct: 614 DPENVGYYVLLS 625



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 162/368 (44%), Gaps = 73/368 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-DIMPERD 59
           +IS Y K  +  K R LFD++ Q D++S+N MISGY  +  +   E A  LF +++    
Sbjct: 255 LISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHET---ESAVTLFRELLASGQ 311

Query: 60  CVTWNTVI--------------------------------------SGYAKTGEMEEALR 81
            V  +T++                                      + Y +  E++ A +
Sbjct: 312 RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQ 371

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS---ASLSALVSGLIQNGEL 138
           LF+  P +++ SWNAMISG+ QNG    AI  F  M  + S    ++++++S   Q G L
Sbjct: 372 LFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGAL 431

Query: 139 DEAARV--LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
                V  L+K     +  E  V     L+  Y + G + EAR+LFD            +
Sbjct: 432 SIGKWVHGLIK----SERLESNVYVSTALVDMYAKCGSIVEARQLFD------------L 475

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEEA 252
              +N+V+WN+MI  Y   G    A ++F +ML+        ++ +++    H   + E 
Sbjct: 476 MVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEG 535

Query: 253 SNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCE 306
           + +F  M       P +  +  MV    + G L  AL+F +RMP +     W +++  C 
Sbjct: 536 NEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACM 595

Query: 307 TNKDYEGA 314
            +K+ E A
Sbjct: 596 IHKNTEMA 603


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 205/617 (33%), Positives = 324/617 (52%), Gaps = 72/617 (11%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISS---RGSGFL------------EEARYLFDIM 55
           +A  R+LF+++ + D+  +NV+I G+  +   + S FL            +   Y F I 
Sbjct: 62  VAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAIS 121

Query: 56  P------ER-----------DCVTWN-----TVISGYAKTGEMEEALRLFNSMPARNVVS 93
                  ER           D V  N      ++  Y K    E A ++F+ MP R+ V 
Sbjct: 122 AASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVL 181

Query: 94  WNAMISGFLQNGDVANAIEFF----DRMPGRDSASLSALVSGLIQNGELDEAARVL-VKC 148
           WN MISGF +N    ++I  F    D     DS +L+ +++ +    EL E    + ++C
Sbjct: 182 WNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAV---AELQEYRLGMGIQC 238

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
            +   G    V     LI  Y + G+  + R LFD+I             + +++S+N+M
Sbjct: 239 LASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQID------------QPDLISYNAM 286

Query: 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI-------HVLDMEEASNLFVKMP- 260
           I  Y    +  SA  +F ++L       ++ + G I       H+       NL +K+  
Sbjct: 287 ISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGI 346

Query: 261 --HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
              P   T  A+ + Y ++  ++ A   F   P+K+L SWN+MI+G   N   + AI LF
Sbjct: 347 ILQPSVST--ALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLF 404

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARC 377
            +M  +   P+  T +SILS  + +  L +G  +H ++ ++ +  +V ++ AL+ MYA+C
Sbjct: 405 QEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKC 463

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G+IVEAR +F+ M + KNVV+WNAMI G   HG   EAL+LF  M    + PT +TF+S+
Sbjct: 464 GSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSI 522

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           L AC+H+GLV EG + F SM N YG +P  EH+A +VDI+GR G+L +A++ I+ MP EP
Sbjct: 523 LYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEP 582

Query: 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
             AVWGALLGAC +H N E+A VA++ L +++PEN   YVLL N+Y+    +  A  VR 
Sbjct: 583 GPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQ 642

Query: 558 LMKSNNIKKPTGYSWVD 574
           ++K   + K  G + ++
Sbjct: 643 VVKKRKLAKTPGCTLIE 659



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/512 (24%), Positives = 228/512 (44%), Gaps = 39/512 (7%)

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSAL 128
           G +    +LFN +   ++  +N +I GF  NG   ++I  +  +  +     D+ + +  
Sbjct: 60  GAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFA 119

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
           +S    +   DE   VL+   S  DG    +   + ++  Y +  R E ARK+FD +P  
Sbjct: 120 ISA--ASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMP-- 175

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD-TFSWNTMISGYIHVL 247
                     +R+ V WN+MI  +++      +  +F  ML+   +F   T+ +    V 
Sbjct: 176 ----------ERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225

Query: 248 DMEE----------ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           +++E          AS    K  H D      ++S Y++ G        F ++ Q +L+S
Sbjct: 226 ELQEYRLGMGIQCLASK---KGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLIS 282

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           +N+MI+G   N + E A+ LF ++   G++ +  T   ++ +      L L   I  +  
Sbjct: 283 YNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSL 342

Query: 358 KT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           K  +I    ++ AL T+Y R   +  AR +F+E    K++ SWNAMI G   +G    A+
Sbjct: 343 KIGIILQPSVSTALTTVYCRLNEVQFARQLFDESP-EKSLASWNAMISGYTQNGLTDRAI 401

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
            LF+ M   ++ P  +T  S+LSACA  G +  G+     ++    +E  +    +LVD+
Sbjct: 402 SLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKW-VHGLIKSERLESNVYVSTALVDM 459

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH-NNVELAQVAAEALMKVEPENSTP 535
             + G + +A  L   M  + +   W A++    +H +  E  ++  E L    P     
Sbjct: 460 YAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVT 518

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
           ++ +    +  G   + NE+   M +N   +P
Sbjct: 519 FLSILYACSHSGLVSEGNEIFHSMANNYGFQP 550



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 131/492 (26%), Positives = 204/492 (41%), Gaps = 81/492 (16%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---ERDCV 61
           Y K      ARK+FD MP+RD V WN MISG+  SR S F +  R   D++      D  
Sbjct: 158 YFKFTRAELARKVFDVMPERDTVLWNTMISGF--SRNSYFEDSIRVFVDMLDVGLSFDST 215

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAIEFFDR 116
           T  TV++  A+  E    + +   + ++     +V     +IS + + G        FD+
Sbjct: 216 TLATVLTAVAELQEYRLGMGI-QCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQ 274

Query: 117 MPGRDSASLSALVSGLIQNGELDEAA---RVLVKCGSRCDGGE--DLVRAYNTLIVGYGQ 171
           +   D  S +A++SG   N E + A    R L+  G R +      L+  Y  L   + Q
Sbjct: 275 IDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVY--LPFNHLQ 332

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS----MIMCYAKAGDVVSAREIFEQ 227
             R+ +                 N+  K  I+   S    +   Y +  +V  AR++F++
Sbjct: 333 LSRLIQ-----------------NLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDE 375

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVK-MPH--PDTLTWNAMVSGYAQIGNLEL-- 282
             E+   SWN MISGY      + A +LF + MP   P+ +T  +++S  AQ+G L +  
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGK 435

Query: 283 ---------------------------------ALDFFKRMPQKNLVSWNSMIAGCETNK 309
                                            A   F  M  KN+V+WN+MI G   + 
Sbjct: 436 WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHG 495

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI-HQMVTKTVIPDVPINN 368
             + A+KLF +M   G  P   TF SIL   S    +  G +I H M        +  + 
Sbjct: 496 HGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHY 555

Query: 369 A-LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           A ++ +  R G +  A    E M L      W A++G C  H   TE   +  S R F++
Sbjct: 556 ACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHK-NTEMANV-ASKRLFQL 613

Query: 428 LPTYITFISVLS 439
            P  + +  +LS
Sbjct: 614 DPENVGYYVLLS 625



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 162/368 (44%), Gaps = 73/368 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-DIMPERD 59
           +IS Y K  +  K R LFD++ Q D++S+N MISGY  +  +   E A  LF +++    
Sbjct: 255 LISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHET---ESAVTLFRELLASGQ 311

Query: 60  CVTWNTVI--------------------------------------SGYAKTGEMEEALR 81
            V  +T++                                      + Y +  E++ A +
Sbjct: 312 RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQ 371

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS---ASLSALVSGLIQNGEL 138
           LF+  P +++ SWNAMISG+ QNG    AI  F  M  + S    ++++++S   Q G L
Sbjct: 372 LFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGAL 431

Query: 139 DEAARV--LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
                V  L+K     +  E  V     L+  Y + G + EAR+LFD            +
Sbjct: 432 SIGKWVHGLIK----SERLESNVYVSTALVDMYAKCGSIVEARQLFD------------L 475

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEEA 252
              +N+V+WN+MI  Y   G    A ++F +ML+        ++ +++    H   + E 
Sbjct: 476 MVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEG 535

Query: 253 SNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCE 306
           + +F  M       P +  +  MV    + G L  AL+F +RMP +     W +++  C 
Sbjct: 536 NEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACM 595

Query: 307 TNKDYEGA 314
            +K+ E A
Sbjct: 596 IHKNTEMA 603


>gi|449470126|ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 1463

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 197/656 (30%), Positives = 328/656 (50%), Gaps = 90/656 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSR-------------GSGFLEE 47
           ++S Y K   +  ARK+FD M +R++ +W+ MI  Y   +             G G L +
Sbjct: 120 LVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPD 179

Query: 48  ARYLFDIMPE-----RDCVT-------------------WNTVISGYAKTGEMEEALRLF 83
           A +LF  + +      D  T                    N++++ + K G++  A + F
Sbjct: 180 A-FLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFF 238

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVSGLIQNGE 137
            +M  R+ VSWN MI+G+ Q G+   A    D M      PG    + + +++   Q G+
Sbjct: 239 GNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGL--VTYNIMIASYSQLGD 296

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK------------- 184
            D    +  K  S   G    V  + ++I G+ Q  R+ +A   F K             
Sbjct: 297 CDLVIDLKKKMESV--GLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITI 354

Query: 185 ----------------IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
                           + ++C   +  +   R  +  NS+I  Y+K G + +AR +F+ +
Sbjct: 355 ASATSACASLKSLQNGLEIHCFAIKMGI--ARETLVGNSLIDMYSKCGKLEAARHVFDTI 412

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELAL 284
           LE+D ++WN+MI GY       +A  LF+++      P+ +TWNAM+SG  Q G+ + A+
Sbjct: 413 LEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAM 472

Query: 285 DFFKRMP-----QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           D F+ M      ++N  SWNS+IAG     +   A+ +F QMQ     P+  T  SIL  
Sbjct: 473 DLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPA 532

Query: 340 SSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            + ++      +IH  V +  +  ++ + N+L+  YA+ G I  +R +F  M   K++++
Sbjct: 533 CANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMS-SKDIIT 591

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN++I G   HG +  A +LF  MR+  + P   T  S++ A   AG+V++GR  F S+ 
Sbjct: 592 WNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSSIT 651

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            E+ I P ++H+ ++VD+ GR GRL DA++ I+ MP EPD ++W +LL ACR H N+ LA
Sbjct: 652 EEHQILPTLDHYLAMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTSLLTACRFHGNLNLA 711

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            +AA+ L ++EP+N   Y LL   YA  G+++   +VR L K + +KK T   WV+
Sbjct: 712 VLAAKRLHELEPDNHVIYRLLVQAYALYGKFEQTLKVRKLGKESAMKKCTAQCWVE 767



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 110/487 (22%), Positives = 186/487 (38%), Gaps = 90/487 (18%)

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
           +S L  NG L EA   +     R  G +     Y  L+      G +E  R+L  ++   
Sbjct: 52  LSYLCSNGLLREAITAIDSISKR--GSKLSTNTYINLLQTCIDVGSIELGRELHVRM--- 106

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                  +  + N      ++  YAK G +  AR++F+ M ER+ ++W+ MI  Y     
Sbjct: 107 ------GLVHRVNPFVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQR 160

Query: 249 MEEASNLFVKMPH----PDTLTW-----------------------------------NA 269
            +E   LF  M      PD   +                                   N+
Sbjct: 161 WKEVVELFFLMMGDGVLPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNS 220

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +++ + + G L LA  FF  M +++ VSWN MIAG     + + A +L   M  +G KP 
Sbjct: 221 ILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPG 280

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEE 389
             T++ +++  S + D                               C  +++ +   E 
Sbjct: 281 LVTYNIMIASYSQLGD-------------------------------CDLVIDLKKKMES 309

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           + L  +V +W +MI G +     ++AL+ FK M    V P  IT  S  SACA    ++ 
Sbjct: 310 VGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQN 369

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           G +       + GI        SL+D+  + G+LE A  +   +  E D   W +++G  
Sbjct: 370 GLE-IHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTI-LEKDVYTWNSMIGG- 426

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY----ADVGRWDDANEVRLLMKSNNIK 565
             +        A E  M++      P V+ +N         G  D A ++  +M+ +   
Sbjct: 427 --YCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIMEKDGGV 484

Query: 566 KPTGYSW 572
           K    SW
Sbjct: 485 KRNTASW 491


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 187/601 (31%), Positives = 288/601 (47%), Gaps = 113/601 (18%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGY----------------ISSRGSGFLEEARYLFDIMPE 57
           ARK+FDE+PQ +  +WN +I  Y                +SS    +  +  + F I   
Sbjct: 84  ARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAA 143

Query: 58  ----------------------RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWN 95
                                  D    N++I  Y   G+++ A ++F ++  ++VVSWN
Sbjct: 144 AEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWN 203

Query: 96  AMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGG 155
           +MI+GF+Q G    A+E F +M   D  +    + G++                S C   
Sbjct: 204 SMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL----------------SACAKI 247

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
            DL          +G+R                C   E N R   N+   N+M+  Y K 
Sbjct: 248 RDL---------EFGRRV---------------CSYIEEN-RVNVNLTLANAMLDMYTKC 282

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
           G +  A+ +F+ M E+D  +W TM+ GY    D E A  +   MP  D + WNA++S Y 
Sbjct: 283 GSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYE 342

Query: 276 QIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
           Q G    AL  F  +  QKN+                               K ++ T  
Sbjct: 343 QNGKPNEALLVFHELQLQKNI-------------------------------KLNQITLV 371

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLL 393
           S LS  + +  L LG  IH  + K  I  +  + +ALI MY++CG + +AR +F  ++  
Sbjct: 372 STLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVE-K 430

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           ++V  W+AMIGG A HG  +EA+++F  M+   V P  +TF +V  AC+H GLV+E    
Sbjct: 431 RDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL 490

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
           F  M + YGI P  +H+A +VD++GR G LE A+  I+ MP  P  +VWGALLGAC++H 
Sbjct: 491 FYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 550

Query: 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           N+ LA++A   L+++EP N   +VLL N+YA  G+WD+ +E+R  M+   +KK  G S +
Sbjct: 551 NLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSI 610

Query: 574 D 574
           +
Sbjct: 611 E 611



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 8/261 (3%)

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK--- 327
           ++  +   +LE A   F  +PQ N  +WN++I    +  D   +I  F+ M V  E    
Sbjct: 72  IAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDM-VSSESQCY 130

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARII 386
           P+++TF  ++  ++ +  L LG  +H M  K+ +  DV + N+LI  Y  CG +  A  +
Sbjct: 131 PNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKV 190

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F  +K  K+VVSWN+MI G    G   +ALELFK M S  V  +++T + VLSACA    
Sbjct: 191 FTTIK-EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRD 249

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +E GR+   S + E  +   +    +++D+  + G +EDA  L   M  E D   W  +L
Sbjct: 250 LEFGRR-VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTML 307

Query: 507 GACRVHNNVELAQVAAEALMK 527
               +  + E A+    A+ K
Sbjct: 308 DGYAISEDYEAAREVLNAMPK 328



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 179/430 (41%), Gaps = 71/430 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y    ++  A K+F  + ++DVVSWN MI+G++     G  ++A  LF  M   D 
Sbjct: 174 LIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ---KGSPDKALELFKKMESEDV 230

Query: 61  ----VTWNTVISG-----------------------------------YAKTGEMEEALR 81
               VT   V+S                                    Y K G +E+A R
Sbjct: 231 KASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKR 290

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           LF++M  ++ V+W  M+ G+  + D   A E  + MP +D  + +AL+S   QNG+ +EA
Sbjct: 291 LFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEA 350

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             V  +   + +   + +   +TL     Q G +E  R +   I  N          K N
Sbjct: 351 LLVFHELQLQKNIKLNQITLVSTL-SACAQVGALELGRWIHSYIKKN--------GIKMN 401

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
               +++I  Y+K GD+  ARE+F  + +RD F W+ MI G        EA ++F KM  
Sbjct: 402 FYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQE 461

Query: 262 ----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN----KDY-E 312
               P+ +T+  +    +  G ++ A   F +M     +        C  +      Y E
Sbjct: 462 ANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLE 521

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA--- 369
            A+K    M +    P    + ++L    G   +H  + + +M    ++   P N+    
Sbjct: 522 KAVKFIEAMPI---PPSTSVWGALL----GACKIHANLSLAEMACTRLLELEPRNDGAHV 574

Query: 370 -LITMYARCG 378
            L  +YA+ G
Sbjct: 575 LLSNIYAKSG 584


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 191/535 (35%), Positives = 292/535 (54%), Gaps = 34/535 (6%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D    +++I  Y++ G + +A  LF+ MP+++ V WN M++G+++NGD  NA   F  
Sbjct: 179 ELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFME 238

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG-----GEDL---VRAYNTLIVG 168
           M   ++   S   + ++       A+ +++  GS+  G     G ++   V     LI  
Sbjct: 239 MRRTETNPNSVTFACVLSVC----ASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDI 294

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y +   VE ARK+FD+            R   +IV   +MI  Y   G   +A EIF  +
Sbjct: 295 YFKCRDVEMARKIFDQ------------RTPVDIVVCTAMISGYVLNGMNNNALEIFRWL 342

Query: 229 L-ERDTFSWNTMIS------GYIHVLDMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNL 280
           L ER   +  T+ S      G   +   +E     +K  H  +    +A++  YA+ G L
Sbjct: 343 LQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRL 402

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           +LA   F  +  K+ V WNSMI  C  N   E AI LF QM + G K D  + S+ LS  
Sbjct: 403 DLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSAC 462

Query: 341 SGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           + +  LH G +IH  + +     D+   +ALI MY++CG +  A  +F+ M+  KN VSW
Sbjct: 463 ANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEE-KNEVSW 521

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N++I    +HG   ++L LF  M    + P ++TF++++SAC HAG V+EG  +F+ M  
Sbjct: 522 NSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTE 581

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
           E GI  R+EH+A +VD+ GR GRL +A  +I  MPF PD  VWG LLGACR+H NVELA+
Sbjct: 582 ELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAE 641

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           VA+  L  ++P+NS  YVLL N++A+ G+W+   ++R LMK   ++K  G SW+D
Sbjct: 642 VASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWID 696



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 195/472 (41%), Gaps = 86/472 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS----RGSGFLEEARYL----- 51
           +I  Y +   +  AR LFD MP +D V WNVM++GY+ +      +G   E R       
Sbjct: 188 LIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPN 247

Query: 52  ------------FDIM---------------PERDCVTWNT--VISGYAKTGEMEEALRL 82
                        +IM                E D    NT  +I  Y K  ++E A ++
Sbjct: 248 SVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKI 307

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFF-----DRMPGRD---------SASLSAL 128
           F+     ++V   AMISG++ NG   NA+E F     +RM              A L+AL
Sbjct: 308 FDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAAL 367

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
             G   +G + +        G  C  G  ++         Y + GR++ A + F  I   
Sbjct: 368 TLGKELHGHILKNGH-----GGSCYVGSAIMDM-------YAKCGRLDLAHQTFIGIS-- 413

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYI 244
                      ++ V WNSMI   ++ G    A ++F QM     + D  S +  +S   
Sbjct: 414 ----------DKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACA 463

Query: 245 HVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           ++  +     +   M       D    +A++  Y++ GNL+LA   F  M +KN VSWNS
Sbjct: 464 NLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNS 523

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT- 359
           +IA    +   + ++ LF  M  +G +PD  TF +I+S       +  G+   + +T+  
Sbjct: 524 IIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEEL 583

Query: 360 -VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            ++  +     ++ ++ R G + EA  +   M    +   W  ++G C  HG
Sbjct: 584 GIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHG 635



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 132/526 (25%), Positives = 232/526 (44%), Gaps = 77/526 (14%)

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN-GEL 138
           LRL+ S P      WN MI GF   G    A+ F+ +M G  +         +I+  G L
Sbjct: 107 LRLWCSEP------WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGL 160

Query: 139 DEAA--RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
           +  A  RV V    +  G E  V   ++LI  Y + G + +AR LFD++P          
Sbjct: 161 NSVALGRV-VHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMP---------- 209

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL- 255
              ++ V WN M+  Y K GD  +A  +F +M   +T   +   +  + V   E   N  
Sbjct: 210 --SKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFG 267

Query: 256 ----------FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
                      ++M  P   T+ A++  Y +  ++E+A   F +    ++V   +MI+G 
Sbjct: 268 SQLHGLVVSSGLEMDSPVANTF-ALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGY 326

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDV 364
             N     A+++F  +  E  + +  T +S+L   +G+  L LG ++H  + K       
Sbjct: 327 VLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSC 386

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            + +A++ MYA+CG +  A   F  +   K+ V WN+MI  C+ +G   EA++LF+ M  
Sbjct: 387 YVGSAIMDMYAKCGRLDLAHQTFIGIS-DKDAVCWNSMITSCSQNGKPEEAIDLFRQMGM 445

Query: 425 FKVLPTYITFISVLSACAHAGLVEEG--------RQHFKS-------MVNEYG------- 462
                  ++  + LSACA+   +  G        R  F+S       +++ Y        
Sbjct: 446 AGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDL 505

Query: 463 -------IEPRIE-HFASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGAC-- 509
                  +E + E  + S++   G HGRL+D+++L  GM     +PD   + A++ AC  
Sbjct: 506 ACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGH 565

Query: 510 --RVHNNVELAQVAAEAL-MKVEPENSTPYVLLYNMYADVGRWDDA 552
             +V   +   +   E L +    E+   Y  + +++   GR ++A
Sbjct: 566 AGQVDEGIHYFRCMTEELGIMARMEH---YACMVDLFGRAGRLNEA 608



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 4/189 (2%)

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARC 377
           +Q  +  +        SIL   +    L  G Q H QM+   +  +  +   L+ MY  C
Sbjct: 35  LQFSIHNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLC 94

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           GA ++A+ IF +++L  +   WN MI G    G    AL  +  M     LP   TF  V
Sbjct: 95  GAFLDAKNIFYQLRLWCS-EPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYV 153

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           + AC     V  GR      +   G E  +   +SL+     +G + DA  L   MP   
Sbjct: 154 IKACGGLNSVALGRV-VHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMP-SK 211

Query: 498 DKAVWGALL 506
           D  +W  +L
Sbjct: 212 DGVLWNVML 220



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 112/258 (43%), Gaps = 34/258 (13%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSM----PARNVVSWNAMI 98
           G L+ A   F  + ++D V WN++I+  ++ G+ EEA+ LF  M       + VS +A +
Sbjct: 400 GRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAAL 459

Query: 99  SGF-----LQNGDVANAIEFFDRMPGR-DSASLSALVSGLIQNGELDEAARVLVKCGSRC 152
           S       L  G   +A  F  R   R D  + SAL+    + G LD A RV        
Sbjct: 460 SACANLPALHYGKEIHA--FMMRGAFRSDLFAESALIDMYSKCGNLDLACRVF------- 510

Query: 153 DGGEDLVR-AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
           D  E+    ++N++I  YG  GR++++  LF  +      G+G    + + V++ ++I  
Sbjct: 511 DTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGM-----LGDG---IQPDHVTFLAIISA 562

Query: 212 YAKAGDVVSAREIFEQMLERDTF-----SWNTMISGYIHVLDMEEASNLFVKMP-HPDTL 265
              AG V      F  M E          +  M+  +     + EA  +   MP  PD  
Sbjct: 563 CGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAG 622

Query: 266 TWNAMVSGYAQIGNLELA 283
            W  ++      GN+ELA
Sbjct: 623 VWGTLLGACRLHGNVELA 640



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 15/154 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           +I  Y K   +  A ++FD M +++ VSWN +I+ Y      G L+++  LF  M     
Sbjct: 493 LIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAY---GNHGRLKDSLNLFHGMLGDGI 549

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
           + D VT+  +IS     G+++E +  F  M         +  +  M+  F + G +  A 
Sbjct: 550 QPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAF 609

Query: 112 EFFDRMPGRDSASLSALVSG---LIQNGELDEAA 142
              + MP    A +   + G   L  N EL E A
Sbjct: 610 GMINSMPFSPDAGVWGTLLGACRLHGNVELAEVA 643


>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
          Length = 596

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 170/482 (35%), Positives = 280/482 (58%), Gaps = 26/482 (5%)

Query: 108 ANAIEFFDRMPGRDSASLSALVSGLIQN-GELDEAARVLVKCGSRCDGGEDLVR---AYN 163
           A ++  FD +P +++ S ++L++ L +  G L +A R+L       DG     R   +YN
Sbjct: 81  AASLAAFDDLPHKNAHSYNSLLAALARGRGTLPDALRLL-------DGMPPASRNVVSYN 133

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
           T+I    + GR  EA ++F ++    DRG G  +   +  +  S     A   D    RE
Sbjct: 134 TVISSLARHGRESEALRVFAQLAR--DRGLGQQQVAIDRFTVVSAASACAGLRDARHLRE 191

Query: 224 IFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279
           +   +    +E      N M+  Y     +E+A  LF +M   D+++W +M++GY +   
Sbjct: 192 LHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGLFDQMTIRDSVSWTSMIAGYCRASM 251

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           L+ A+  F  MP ++ ++W ++I+G E N + E A++LF +M  EG  P      S L  
Sbjct: 252 LDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGA 311

Query: 340 SSGIVDLHLGMQIHQMVTKTVIPDVPIN----NALITMYARCGAIVEARIIFEEMKLLKN 395
            + +  +  G ++H  + +  I   P N    NALI MY++CG +V A  +F+ M L ++
Sbjct: 312 CAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRM-LERD 370

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           ++SWN+M+ G + +G   ++L +F+ M   +V PTY+TF++VL+AC+HAGLV +GR+  +
Sbjct: 371 IISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILE 430

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGACRVH 512
           SM  ++G+EPR EH+A+ +D +GR+ +LE+A + IKG+  +        WGALLGAC VH
Sbjct: 431 SM-QDHGVEPRAEHYAAFIDALGRNHQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVH 489

Query: 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
            N+E+A+  AEAL ++EPENS  YV+L N+Y+  G+WDDA +VR LMK   ++K   YSW
Sbjct: 490 GNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVRALMKGKGLRKDQAYSW 549

Query: 573 VD 574
           ++
Sbjct: 550 IE 551



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 161/335 (48%), Gaps = 33/335 (9%)

Query: 26  VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNS 85
           V+  N M+  Y  +   G +E+AR LFD M  RD V+W ++I+GY +   +++A+++F+ 
Sbjct: 205 VIMANAMVDAYSKA---GRVEDARGLFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDM 261

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS-ALVSGLIQNGELDEAARV 144
           MPA++ ++W A+ISG  QNG+   A+E F+RM G        ALVS L    ++   AR 
Sbjct: 262 MPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARG 321

Query: 145 LVKCG---SRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
               G    R  G +   V  +N LI  Y + G +  A  +FD++             +R
Sbjct: 322 KEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRM------------LER 369

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEEASNLF 256
           +I+SWNSM+  ++  G    +  +FE+ML+ +      ++  +++   H   + +   + 
Sbjct: 370 DIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRIL 429

Query: 257 VKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK----NLVSWNSMIAGCETN 308
             M      P    + A +    +   LE A +F K +  K       SW +++  C  +
Sbjct: 430 ESMQDHGVEPRAEHYAAFIDALGRNHQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVH 489

Query: 309 KDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMSSG 342
            + E A ++   + Q+E E   R+   S +  ++G
Sbjct: 490 GNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAG 524



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 140/302 (46%), Gaps = 36/302 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  Y K   +  AR LFD+M  RD VSW  MI+GY     +  L++A  +FD+MP +D 
Sbjct: 211 MVDAYSKAGRVEDARGLFDQMTIRDSVSWTSMIAGYCR---ASMLDDAVQVFDMMPAQDA 267

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVV----SWNAMISGFLQNGDVANAIE---- 112
           + W  +ISG+ + GE E AL LF  M    VV    +  + +    + G VA   E    
Sbjct: 268 IAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGF 327

Query: 113 FFDRMPGRDSASL---SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
              R  G D  ++   +AL+    + G++  A  V  +   R     D++ ++N+++ G+
Sbjct: 328 ILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLER-----DII-SWNSMVTGF 381

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
              G+ +++  +F+++  +          +   V++ +++   + AG V   R I E M 
Sbjct: 382 SHNGQGKQSLAVFERMLKD--------EVQPTYVTFLAVLTACSHAGLVSDGRRILESMQ 433

Query: 230 ERDTFSWNTMISGYIHVL----DMEEAS----NLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           +          + +I  L     +EEAS     L  K+    T +W A++      GN+E
Sbjct: 434 DHGVEPRAEHYAAFIDALGRNHQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIE 493

Query: 282 LA 283
           +A
Sbjct: 494 IA 495


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 204/657 (31%), Positives = 323/657 (49%), Gaps = 136/657 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY-------------ISSRGSGFLEE 47
           +++ Y    +   AR++FDEMP+RDVVSWN ++S +             +S   SGF   
Sbjct: 160 LVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLN 219

Query: 48  ARYLFDIMPERDCVT-------------------------WNTVISGYAKTGEMEEALRL 82
              L  ++P   C T                          N ++  Y K G++E ++++
Sbjct: 220 VASLVSVVPA--CGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQV 277

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVSGLIQNG 136
           F+ M  +N VSWN+ I  FL  G   + +  F +M      PG  S +LS+L+  L++ G
Sbjct: 278 FDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPG--SITLSSLLPALVELG 335

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
             D    V          G  + RA +                                 
Sbjct: 336 SFDLGREV---------HGYSIKRAMDL-------------------------------- 354

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF 256
               +I   NS++  YAK G +  A  IFEQM +R+  SWN MI+  +      EA  L 
Sbjct: 355 ----DIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLV 410

Query: 257 VKMPH----PDTLT----------------------W-------------NAMVSGYAQI 277
             M      P+++T                      W             NA++  Y++ 
Sbjct: 411 TDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKC 470

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
           G L LA + F+R  +K+ VS+N++I G   +     ++ LF QM+  G   D  +F   L
Sbjct: 471 GQLSLARNIFER-SEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGAL 529

Query: 338 SMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNV 396
           S  + +     G +IH ++ + ++   P ++N+L+ +Y + G +V A  IF ++   K+V
Sbjct: 530 SACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITK-KDV 588

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
            SWN MI G   HG    A ELF+ M+   +   ++++I+VL+AC+H GLV++G+++F  
Sbjct: 589 ASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQ 648

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE 516
           MV +  IEP+  H+A +VD++GR G+L    ++I+ MPF  +  VWGALLGACR+H N+E
Sbjct: 649 MVAQ-NIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIE 707

Query: 517 LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           LAQ AAE L +++PE+S  Y L+ NMYA+ GRW++AN++R LMKS  ++K   YSWV
Sbjct: 708 LAQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWV 764



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 142/472 (30%), Positives = 237/472 (50%), Gaps = 29/472 (6%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIE-FFDRM 117
           D  T NT+++ YA  G+  +A R+F+ MP R+VVSWN+++S FL NG   +A       M
Sbjct: 153 DVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMM 212

Query: 118 PGRDSASLSALVSGLIQNG-ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
                 ++++LVS +   G E +E   + +   +   G   +V   N L+  YG+ G VE
Sbjct: 213 RSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVE 272

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            + ++FD +             ++N VSWNS I C+  AG       +F +M E +    
Sbjct: 273 ASMQVFDGM------------LEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPG 320

Query: 237 NTMISGYIHVL------DM-EEASNLFVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFK 288
           +  +S  +  L      D+  E     +K     D    N++V  YA+ G+LE A   F+
Sbjct: 321 SITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFE 380

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
           +M  +N+VSWN+MIA    N     A +L   MQ  GE P+  T  ++L   + +  L +
Sbjct: 381 QMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKM 440

Query: 349 GMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G QIH   + + ++ D+ I+NALI MY++CG +  AR IFE  +  K+ VS+N +I G +
Sbjct: 441 GKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSE--KDDVSYNTLILGYS 498

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE-YGIEPR 466
              +  E+L LFK MRS  +    ++F+  LSAC +  + + G++    +V       P 
Sbjct: 499 QSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPF 558

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
           + +  SL+D+  + G L  A  +   +  + D A W  ++    +H  +++A
Sbjct: 559 LSN--SLLDLYTKGGMLVTASKIFNKIT-KKDVASWNTMILGYGMHGQIDIA 607



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 112/248 (45%), Gaps = 16/248 (6%)

Query: 269 AMVSGYAQIGNLELALDFFKRMPQK--NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
           A++  YA + +L  A    +  P +  +   WNS+     +      A++++  M     
Sbjct: 54  ALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLSRALSSASLPSEALRVYNLMLRSAV 113

Query: 327 KPDRHTFSSILSMSSGIVDLH--LGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEA 383
           +PD  TF   L  ++  V      G+++H   + +  + DV   N L+  YA CG   +A
Sbjct: 114 RPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHLADVFTGNTLVAFYAACGKACDA 173

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
           R +F+EM   ++VVSWN+++     +G   +A     SM          + +SV+ AC  
Sbjct: 174 RRVFDEMP-ERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACG- 231

Query: 444 AGLVEEGRQHF----KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
                E  + F     ++  + G+   +    +LVD+ G+ G +E +M +  GM  E ++
Sbjct: 232 ----TEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGM-LEQNE 286

Query: 500 AVWGALLG 507
             W + +G
Sbjct: 287 VSWNSAIG 294


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 184/588 (31%), Positives = 297/588 (50%), Gaps = 84/588 (14%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR---NVVSWNAMISGFLQNGDVANAIEF 113
           E +    N +++ Y++ G +EEA  +F+ +  R   +V+SWN+++S  +++ +   A++ 
Sbjct: 42  ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 101

Query: 114 FDRM-------PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-VRAYNTL 165
           F +M       P  + + + ++V+ L   G L    +     G+    G  L V   N L
Sbjct: 102 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNAL 161

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           I  Y + G +E A K+F+ +              +++VSWN+M+  Y+++G+  +A E+F
Sbjct: 162 IDAYAKCGLMENAVKVFNMMEF------------KDVVSWNAMVAGYSQSGNFKAAFELF 209

Query: 226 EQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKM---------------------- 259
           + M    +  D  +W  +I+GY       EA N+F +M                      
Sbjct: 210 KNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASL 269

Query: 260 ---------------------------PHPDTLTWNAMVSGYAQIGNLELALDFFKRMP- 291
                                         D + +NA++  Y++  + + A   F  +P 
Sbjct: 270 GAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPL 329

Query: 292 -QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE--GEKPDRHTFSSILSMSSGIVDLHL 348
            ++N+V+W  MI G     D   A+KLF++M  E  G  P+ +T S IL   + +  + +
Sbjct: 330 EERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRI 389

Query: 349 GMQIHQMVTKTVIPDVP---INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
           G QIH  V +    D     + N LI MY++CG +  AR +F+ M   K+ +SW +M+ G
Sbjct: 390 GKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQ-KSAISWTSMMTG 448

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
              HG  +EAL++F  MR    +P  ITF+ VL AC+H G+V++G  +F SM  +YG+ P
Sbjct: 449 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTP 508

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
           R EH+A  +D++ R GRL+ A   +K MP EP   VW ALL ACRVH+NVELA+ A   L
Sbjct: 509 RAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 568

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +++  EN   Y L+ N+YA  GRW D   +R LMK + IKK  G SWV
Sbjct: 569 VEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWV 616



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 200/472 (42%), Gaps = 123/472 (26%)

Query: 147 KCGSR------CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           +CGS       C+G E  V   N L+  Y + G +EEA  +FD+I     RG  +V    
Sbjct: 27  RCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEIT---QRGIDDV---- 79

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQML---------ER-------------------- 231
             +SWNS++  + K+ +  +A ++F +M          ER                    
Sbjct: 80  --ISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 137

Query: 232 ----------------DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
                           D F  N +I  Y     ME A  +F  M   D ++WNAMV+GY+
Sbjct: 138 QTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYS 197

Query: 276 QIGNLELALDFFKRMPQKN----LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
           Q GN + A + FK M ++N    +V+W ++IAG         A+ +F QM   G  P+  
Sbjct: 198 QSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCV 257

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVI-----------PDVPINNALITMYARCGAI 380
           T  S+LS  + +     GM+IH    K  +            D+ + NALI MY++C + 
Sbjct: 258 TIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 317

Query: 381 VEARIIFEEMKL-LKNVVSWNAMIGGCASHGFATEALELFKSMRS--FKVLPTYITFISV 437
             AR IF+++ L  +NVV+W  MIGG A +G + +AL+LF  M S  + V P   T   +
Sbjct: 318 KAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCI 377

Query: 438 LSACAH-------------------------------------AGLVEEGRQHFKSMVNE 460
           L ACAH                                      G V+  R  F SM  +
Sbjct: 378 LMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQK 437

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGAC 509
             I      + S++   G HGR  +A+D+   M    F PD   +  +L AC
Sbjct: 438 SAIS-----WTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYAC 484



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 127/515 (24%), Positives = 212/515 (41%), Gaps = 116/515 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR---DVVSWNVMISGYISS------------------ 39
           +++ Y +   + +A  +FDE+ QR   DV+SWN ++S ++ S                  
Sbjct: 51  LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVH 110

Query: 40  -RGSGFLEEARYLFDIMPE-----------------------RDCVTWNTVISGYAKTGE 75
            + +    +   + +I+P                         D    N +I  YAK G 
Sbjct: 111 EKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGL 170

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSG 131
           ME A+++FN M  ++VVSWNAM++G+ Q+G+   A E F  M       D  + +A+++G
Sbjct: 171 MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAG 230

Query: 132 LIQNGELDEAAR-------------------VLVKCGS----------------RC---- 152
             Q G   EA                     VL  C S                 C    
Sbjct: 231 YSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTL 290

Query: 153 ---DGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
               GGED  +  YN LI  Y +    + AR +FD IP+           +RN+V+W  M
Sbjct: 291 DNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLE----------ERNVVTWTVM 340

Query: 209 IMCYAKAGDVVSAREIFEQMLERD--------TFSWNTMISGYIHVLDMEEASNLFVKMP 260
           I  +A+ GD   A ++F +M+           T S   M   ++  + + +  + +V   
Sbjct: 341 IGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRH 400

Query: 261 HP-DTLTW---NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
           H  D+  +   N +++ Y++ G+++ A   F  M QK+ +SW SM+ G   +     A+ 
Sbjct: 401 HQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALD 460

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINNALITMY 374
           +F +M+  G  PD  TF  +L   S  G+VD  L           + P        I + 
Sbjct: 461 IFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLL 520

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           AR G + +A    ++M +    V W A++  C  H
Sbjct: 521 ARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVH 555



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 13/204 (6%)

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEA 383
           G + D  T   +L     +     G   H ++       +V I NAL+ MY+RCG++ EA
Sbjct: 5   GTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 64

Query: 384 RIIFEEM--KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF-KVLPT-----YITFI 435
            +IF+E+  + + +V+SWN+++        A  AL+LF  M       PT      I+ +
Sbjct: 65  SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 124

Query: 436 SVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           ++L AC     V + ++ H  ++ N   ++  + +  +L+D   + G +E+A+ +   M 
Sbjct: 125 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGN--ALIDAYAKCGLMENAVKVFNMME 182

Query: 495 FEPDKAVWGALLGACRVHNNVELA 518
           F+ D   W A++       N + A
Sbjct: 183 FK-DVVSWNAMVAGYSQSGNFKAA 205


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 180/536 (33%), Positives = 291/536 (54%), Gaps = 37/536 (6%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D V  ++++  YAK    E+A+ LFN MP ++V  WN +IS + Q+G+   A+E+F  M 
Sbjct: 140 DIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMR 199

Query: 119 ----GRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
                 +S +++  +S   +  +L+    +   L+  G   D         + L+  YG+
Sbjct: 200 RFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDS-----FISSALVDMYGK 254

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G +E A ++F+++P            K+ +V+WNSMI  Y   GD +S  ++F++M   
Sbjct: 255 CGHLEMAIEVFEQMP------------KKTVVAWNSMISGYGLKGDSISCIQLFKRMYNE 302

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPH---------PDTLTWNAMVSGYAQIGNLEL 282
                 T +S  I V     A  L  K  H          D    ++++  Y + G +EL
Sbjct: 303 GVKPTLTTLSSLIMVCS-RSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVEL 361

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A + FK +P+  +VSWN MI+G         A+ LF +M+    +PD  TF+S+L+  S 
Sbjct: 362 AENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQ 421

Query: 343 IVDLHLGMQIHQMVT-KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  L  G +IH ++  K +  +  +  AL+ MYA+CGA+ EA  +F+ +   +++VSW +
Sbjct: 422 LAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPK-RDLVSWTS 480

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI    SHG A  ALELF  M    + P  +TF+++LSAC HAGLV+EG  +F  MVN Y
Sbjct: 481 MITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVY 540

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP-FEPDKAVWGALLGACRVHNNVELAQV 520
           GI PR+EH++ L+D++GR GRL +A ++++  P    D  +   L  ACR+H N++L   
Sbjct: 541 GIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAE 600

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
            A  L+  +P++S+ Y+LL NMYA   +WD+   VR  MK   +KK  G SW++ +
Sbjct: 601 IARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEIN 656



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 140/501 (27%), Positives = 245/501 (48%), Gaps = 49/501 (9%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-WNAMISGFLQNGDVANAIEFFD 115
           + D      +I+ Y      + A  +F++M     +S WN +++G+ +N     A+E F+
Sbjct: 35  QNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFE 94

Query: 116 RMPGR-----DSASLSALVS---GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV 167
           ++        DS +  +++    GL +          LVK G   D     +   ++L+ 
Sbjct: 95  KLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMD-----IVVGSSLVG 149

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y +    E+A  LF+++P            ++++  WN++I CY ++G+   A E F  
Sbjct: 150 MYAKCNAFEKAIWLFNEMP------------EKDVACWNTVISCYYQSGNFKEALEYFGL 197

Query: 228 M----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGN 279
           M     E ++ +  T IS    +LD+     +  ++ +     D+   +A+V  Y + G+
Sbjct: 198 MRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGH 257

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           LE+A++ F++MP+K +V+WNSMI+G     D    I+LF +M  EG KP   T SS++ +
Sbjct: 258 LEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMV 317

Query: 340 SSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            S    L  G  +H    +  I  DV IN++L+ +Y +CG +  A  IF+ +   K VVS
Sbjct: 318 CSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSK-VVS 376

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN MI G  + G   EAL LF  MR   V P  ITF SVL+AC+    +E+G +     +
Sbjct: 377 WNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEE-----I 431

Query: 459 NEYGIEPRIEH----FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           +   IE ++++      +L+D+  + G +++A  + K +P + D   W +++ A   H  
Sbjct: 432 HNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITAYGSHGQ 490

Query: 515 VELAQVAAEALMKVEPENSTP 535
              A VA E   ++   N  P
Sbjct: 491 ---AYVALELFAEMLQSNMKP 508



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 208/464 (44%), Gaps = 73/464 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y K     KA  LF+EMP++DV  WN +IS Y     SG  +EA   F +M     
Sbjct: 147 LVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQ---SGNFKEALEYFGLMRRFGF 203

Query: 57  ERDCVTWNTVISG-----------------------------------YAKTGEMEEALR 81
           E + VT  T IS                                    Y K G +E A+ 
Sbjct: 204 EPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIE 263

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           +F  MP + VV+WN+MISG+   GD  + I+ F RM           +S LI       +
Sbjct: 264 VFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIM--VCSRS 321

Query: 142 ARVL----VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           AR+L    V   +  +  +  V   ++L+  Y + G+VE A  +F  IP           
Sbjct: 322 ARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIP----------- 370

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDM---E 250
            K  +VSWN MI  Y   G +  A  +F +M    +E D  ++ ++++    +  +   E
Sbjct: 371 -KSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGE 429

Query: 251 EASNLFV-KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           E  NL + K    + +   A++  YA+ G ++ A   FK +P+++LVSW SMI    ++ 
Sbjct: 430 EIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHG 489

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMV-TKTVIPDVPI 366
               A++LF +M     KPDR TF +ILS    +G+VD       +QMV    +IP V  
Sbjct: 490 QAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVD-EGCYYFNQMVNVYGIIPRVEH 548

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVS-WNAMIGGCASH 409
            + LI +  R G + EA  I ++   +++ V   + +   C  H
Sbjct: 549 YSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLH 592



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/460 (23%), Positives = 195/460 (42%), Gaps = 128/460 (27%)

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER---- 231
           + A+ +FD +   C+           I  WN ++  Y K    V A E+FE++L      
Sbjct: 55  DHAKCVFDNMENPCE-----------ISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLK 103

Query: 232 -DTFSWNTMISG----YIHVLD-------------------------------MEEASNL 255
            D++++ +++      Y +VL                                 E+A  L
Sbjct: 104 PDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWL 163

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           F +MP  D   WN ++S Y Q GN + AL++F                         G +
Sbjct: 164 FNEMPEKDVACWNTVISCYYQSGNFKEALEYF-------------------------GLM 198

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMY 374
           + F      G +P+  T ++ +S  + ++DL+ GM+IH +++    + D  I++AL+ MY
Sbjct: 199 RRF------GFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMY 252

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
            +CG +  A  +FE+M   K VV+WN+MI G    G +   ++LFK M +  V PT  T 
Sbjct: 253 GKCGHLEMAIEVFEQMP-KKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTL 311

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH----FASLVDIVGRHGRLEDAMDLI 490
            S++  C+ +  + EG+      V+ Y I  RI+      +SL+D+  + G++E A ++ 
Sbjct: 312 SSLIMVCSRSARLLEGK-----FVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIF 366

Query: 491 KGMP----------------------------------FEPDKAVWGALLGACRVHNNVE 516
           K +P                                   EPD   + ++L AC     +E
Sbjct: 367 KLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALE 426

Query: 517 LAQVAAEALMKVEPENSTPYV-LLYNMYADVGRWDDANEV 555
             +     +++ + +N+   +  L +MYA  G  D+A  V
Sbjct: 427 KGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSV 466



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 4/165 (2%)

Query: 346 LHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           L  G  IHQ +VT  +  D+ +   LI +Y  C     A+ +F+ M+    +  WN ++ 
Sbjct: 19  LKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISLWNGLMA 78

Query: 405 GCASHGFATEALELFKSMRSFKVL-PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
           G   +    EALELF+ +  +  L P   T+ SVL AC        G+     +V   G+
Sbjct: 79  GYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKT-GL 137

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
              I   +SLV +  +    E A+ L   MP E D A W  ++  
Sbjct: 138 MMDIVVGSSLVGMYAKCNAFEKAIWLFNEMP-EKDVACWNTVISC 181


>gi|302820037|ref|XP_002991687.1| hypothetical protein SELMODRAFT_133908 [Selaginella moellendorffii]
 gi|300140536|gb|EFJ07258.1| hypothetical protein SELMODRAFT_133908 [Selaginella moellendorffii]
          Length = 589

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 170/546 (31%), Positives = 286/546 (52%), Gaps = 23/546 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y     M +A   F ++ + +  SWN+++  Y+ +   G +  AR +FD MP+   
Sbjct: 63  LIQMYSSCGSMDEAHLAFSQIQRSNTFSWNILLGAYVRN---GDIVLAREVFDRMPQWGL 119

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG-DVANAIEFFDRMPG 119
           V++N++++ Y++ G  E++  +F+ MP  + +SWNAMI+ F  +G   A     F+RM  
Sbjct: 120 VSFNSILTAYSRIGSPEQSSVIFHWMPELDEISWNAMIAAFAHSGHSFAAKNNLFERMGE 179

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           R+  S ++L++   +N E + A  VL K         D+V +    ++GY   G +  A 
Sbjct: 180 RNIVSWNSLITAHAKNAEPELARAVLGKMPQ-----HDIVSS-TAAMLGYAYTGDMSSAI 233

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            LF  +P            +RN++SWN+++  Y     V  A + F +M +    SW  +
Sbjct: 234 ALFLAMP------------QRNLISWNTLVSAYGHTASVEGAEDSFARMPKWSISSWIGL 281

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           I GY     ++ A  +F  +P  +T   NAM++G      ++ AL  F  +P ++++SW+
Sbjct: 282 IIGYCQGGRIQSALAVFRDLPAKNTSACNAMLTGLCLNAVMDEALALFLAIPARDVISWS 341

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           +++ G   + D   A+K F+ M ++G KPD   F   +       DL  G  +H  +   
Sbjct: 342 AIVTGFLQSGDARSAMKYFLLMDLDGIKPDEMAFLVAIDSCGAASDLARGRFLHAEIDAA 401

Query: 360 VI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
                  + N+L+ MY +CG + EAR +F+     ++   WN MI   +  GF  EAL+L
Sbjct: 402 GYDSSSTVANSLVGMYGKCGNLQEARRLFDRGGARRSSALWNTMISCYSQAGFVREALDL 461

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
             +M     +PT +T+I+ LSAC+H GLVE G  HF +M   YGI P  EH+A ++D++ 
Sbjct: 462 LHAMEQDGTIPTAVTYIAALSACSHMGLVELGTHHFTAMSESYGIAPAAEHYACMIDLLS 521

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           R G LE A + ++ MP  PD   W ALLGAC+ H  V+ A+  AE  ++   + ++ Y+L
Sbjct: 522 RAGILESAEEFVERMPVAPDGIAWTALLGACKSHGGVDAAERVAERALQKGGQWASSYIL 581

Query: 539 LYNMYA 544
           L N+ A
Sbjct: 582 LSNLQA 587



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 92/427 (21%), Positives = 164/427 (38%), Gaps = 102/427 (23%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM---------------- 249
           N +I  Y+  G +  A   F Q+   +TFSWN ++  Y+   D+                
Sbjct: 61  NLLIQMYSSCGSMDEAHLAFSQIQRSNTFSWNILLGAYVRNGDIVLAREVFDRMPQWGLV 120

Query: 250 ---------------EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL-DFFKRMPQK 293
                          E++S +F  MP  D ++WNAM++ +A  G+   A  + F+RM ++
Sbjct: 121 SFNSILTAYSRIGSPEQSSVIFHWMPELDEISWNAMIAAFAHSGHSFAAKNNLFERMGER 180

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM--------SSGIVD 345
           N+VSWNS+I     N + E      +   V G+ P     SS  +M         S  + 
Sbjct: 181 NIVSWNSLITAHAKNAEPE------LARAVLGKMPQHDIVSSTAAMLGYAYTGDMSSAIA 234

Query: 346 LHLGMQIHQMV-----------TKTV---------IPDVPINN--ALITMYARCGAIVEA 383
           L L M    ++           T +V         +P   I++   LI  Y + G I  A
Sbjct: 235 LFLAMPQRNLISWNTLVSAYGHTASVEGAEDSFARMPKWSISSWIGLIIGYCQGGRIQSA 294

Query: 384 RIIFEEMKL------------------------------LKNVVSWNAMIGGCASHGFAT 413
             +F ++                                 ++V+SW+A++ G    G A 
Sbjct: 295 LAVFRDLPAKNTSACNAMLTGLCLNAVMDEALALFLAIPARDVISWSAIVTGFLQSGDAR 354

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
            A++ F  M    + P  + F+  + +C  A  +  GR    + ++  G +       SL
Sbjct: 355 SAMKYFLLMDLDGIKPDEMAFLVAIDSCGAASDLARGR-FLHAEIDAAGYDSSSTVANSL 413

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           V + G+ G L++A  L          A+W  ++     ++     + A + L  +E + +
Sbjct: 414 VGMYGKCGNLQEARRLFDRGGARRSSALWNTMIS---CYSQAGFVREALDLLHAMEQDGT 470

Query: 534 TPYVLLY 540
            P  + Y
Sbjct: 471 IPTAVTY 477


>gi|357153150|ref|XP_003576355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Brachypodium distachyon]
          Length = 617

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 187/574 (32%), Positives = 317/574 (55%), Gaps = 47/574 (8%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYA-KTGEMEEALRLF 83
           D   WN+++  Y  +RG G L +AR L D+MP    V++NT++SGYA  +G +E AL L 
Sbjct: 28  DTYRWNLLLRAY--TRGGG-LADARALLDLMPSPTLVSYNTLLSGYAASSGLLEAALHLL 84

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFF---DRMPGRDSASLSALVS---GLIQNGE 137
           ++MP R+  SWN  ISG  + G + +A+  F    R P +  A   ++VS        G 
Sbjct: 85  DAMPERDAWSWNVAISGLARAGRLTDALRRFLEMTRGPVQPDAFTYSIVSPCCCGGAGGG 144

Query: 138 LDEAARV---LVKCGSRCDG--GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           L+ A +V    +K G+  D   G   VR Y+ L       G + +ARK+F+ +P      
Sbjct: 145 LESAWQVHARALKAGAFADACVGTGFVRLYSGL-------GLIGDARKVFEGMP------ 191

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHV-- 246
                 +R++V+WN ++ C  ++G+  S  +    M+    + D F++ T+++G      
Sbjct: 192 ------ERDLVAWNVLLDCGMRSGEAGSCLQDLVLMIGGRVQPDEFTFATVVNGLAERFA 245

Query: 247 -LDMEEASNLFVKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
            L+  +  ++ +K  H  D    N++++ Y + G ++LA   F+ MP+K++VSW ++I+G
Sbjct: 246 GLEAMQVHSVILKSGHLKDLFLCNSLLNVYGRCGYVDLAKKLFEAMPEKDVVSWTALISG 305

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV 364
              +     A K F +MQ     P+  TF S++S  + + DL  G Q H +V K  +  +
Sbjct: 306 LVASGHQADAFKTFCRMQGAATVPNSFTFGSVVSSCACVNDLGGGRQCHALVIKHGLESI 365

Query: 365 P-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           P + ++L+ MY++C  + +A  +F+ M   +++VSWNAMI G A +G +  ALEL+  M 
Sbjct: 366 PTVASSLLDMYSKCAEMDDATRMFDAMPR-RDIVSWNAMICGLAQNGRSARALELYDEML 424

Query: 424 SF---KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
                 + P  +T + VLSAC+H G VE+G  +F  MVN++ IEP  EH++ LVD+  R 
Sbjct: 425 RLHQESITPNSVTCVGVLSACSHVGAVEKGCIYFTQMVNDFHIEPVPEHYSCLVDLFARA 484

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G L++A  +I   PF+ D  + G LL  CR + N+++A+  A+ ++  + +N++   LL 
Sbjct: 485 GLLDEAEGIISNSPFKHDAIILGTLLNGCRKYGNLDMAKRIAKRILVDDSDNASTIFLLS 544

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           NM+     W+DA+E+R  + S+  +K  G SW+D
Sbjct: 545 NMFIANEEWNDASELRKAVISSGTRKFVGNSWID 578



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 180/389 (46%), Gaps = 81/389 (20%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMIS-GYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           +  ARK+F+ MP+RD+V+WNV++  G  S      L++   +     + D  T+ TV++G
Sbjct: 180 IGDARKVFEGMPERDLVAWNVLLDCGMRSGEAGSCLQDLVLMIGGRVQPDEFTFATVVNG 239

Query: 70  -----------------------------------YAKTGEMEEALRLFNSMPARNVVSW 94
                                              Y + G ++ A +LF +MP ++VVSW
Sbjct: 240 LAERFAGLEAMQVHSVILKSGHLKDLFLCNSLLNVYGRCGYVDLAKKLFEAMPEKDVVSW 299

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD---EAARVLVK 147
            A+ISG + +G  A+A + F RM G     +S +  ++VS      +L    +   +++K
Sbjct: 300 TALISGLVASGHQADAFKTFCRMQGAATVPNSFTFGSVVSSCACVNDLGGGRQCHALVIK 359

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
                 G E +    ++L+  Y +   +++A ++FD +P            +R+IVSWN+
Sbjct: 360 -----HGLESIPTVASSLLDMYSKCAEMDDATRMFDAMP------------RRDIVSWNA 402

Query: 208 MIMCYAKAGDVVSAREIFEQM--LERDTFSWNT-----MISGYIHVLDMEEASNLFVKM- 259
           MI   A+ G    A E++++M  L +++ + N+     ++S   HV  +E+    F +M 
Sbjct: 403 MICGLAQNGRSARALELYDEMLRLHQESITPNSVTCVGVLSACSHVGAVEKGCIYFTQMV 462

Query: 260 ------PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYE 312
                 P P+   ++ +V  +A+ G L+ A       P K + +   +++ GC    + +
Sbjct: 463 NDFHIEPVPE--HYSCLVDLFARAGLLDEAEGIISNSPFKHDAIILGTLLNGCRKYGNLD 520

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A ++  ++ V+    D    S+I  +S+
Sbjct: 521 MAKRIAKRILVD----DSDNASTIFLLSN 545



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 10/154 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----SSRGSGFLEEARYLFDIMP 56
           ++  Y K  EM  A ++FD MP+RD+VSWN MI G      S+R     +E   L     
Sbjct: 372 LLDMYSKCAEMDDATRMFDAMPRRDIVSWNAMICGLAQNGRSARALELYDEMLRLHQESI 431

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
             + VT   V+S  +  G +E+    F  M     +      ++ ++  F + G +  A 
Sbjct: 432 TPNSVTCVGVLSACSHVGAVEKGCIYFTQMVNDFHIEPVPEHYSCLVDLFARAGLLDEAE 491

Query: 112 EFFDRMPGR-DSASLSALVSGLIQNGELDEAARV 144
                 P + D+  L  L++G  + G LD A R+
Sbjct: 492 GIISNSPFKHDAIILGTLLNGCRKYGNLDMAKRI 525


>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera]
 gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 186/534 (34%), Positives = 286/534 (53%), Gaps = 51/534 (9%)

Query: 47  EARYLFDIMPERD-CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG 105
            AR +FD  P RD     N++I  Y    +  E+  L+  +  R   S+           
Sbjct: 38  HARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDL--RRNTSFTP--------- 86

Query: 106 DVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAY 162
                          DS + S L      N  + E   +   +V  G   D     + A 
Sbjct: 87  ---------------DSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLD-----LYAA 126

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
             L+  Y + G+++ ARKLFD++              R+ VSW ++I  Y ++GD+ +A 
Sbjct: 127 TALVDMYAKFGKMDCARKLFDEM------------IDRSQVSWTALIGGYVRSGDMDNAG 174

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
           ++F+QM+E+D+ ++NTMI  Y+ + DM  A  LF +MP    ++W  M+ GY+  GNL+ 
Sbjct: 175 KLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDS 234

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ-VEGEKPDRHTFSSILSMSS 341
           A   F  MP+KNL SWN+MI+G   NK    A+KLF +MQ     +PD  T  S+L   +
Sbjct: 235 ARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIA 294

Query: 342 GIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +  L LG  +H+ V +  +     +  ALI MYA+CG IV++R +F+ M   K   SWN
Sbjct: 295 DLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMP-EKETASWN 353

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           A+I   A +G A EAL LF  M     +P  IT I VLSAC H+GLVEEG++ FK+M  E
Sbjct: 354 ALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAM-EE 412

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           +G+ P+IEH+  +VD++GR G L++A  L++ MP+E +  +  + L AC    +V  A+ 
Sbjct: 413 FGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAER 472

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             +  +K+E  N   Y++L N+YA+  RW +A+EV+ LM+ N +KK  G S ++
Sbjct: 473 VLKEAIKMEAWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIE 526



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 153/311 (49%), Gaps = 38/311 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K  +M  ARKLFDEM  R  VSW  +I GY+ S   G ++ A  LFD M E+D 
Sbjct: 129 LVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRS---GDMDNAGKLFDQMIEKDS 185

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
             +NT+I  Y K G+M  A +LF+ MP R+VVSW  MI G+  NG++ +A   FD MP +
Sbjct: 186 AAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEK 245

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++SG  QN +  EA ++  +  S      D V   + L               
Sbjct: 246 NLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVL--------------- 290

Query: 181 LFDKIPVNCDRGEGNV-----------RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
                P   D G  ++           +  R      ++I  YAK G++V +R +F+ M 
Sbjct: 291 -----PAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMP 345

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALD 285
           E++T SWN +I+ +      +EA  LF++M H    P+ +T   ++S     G +E    
Sbjct: 346 EKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKR 405

Query: 286 FFKRMPQKNLV 296
           +FK M +  L 
Sbjct: 406 WFKAMEEFGLT 416



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 196/443 (44%), Gaps = 70/443 (15%)

Query: 14  ARKLFDEMPQR-DVVSWNVMISGYIS--------------SRGSGFLEEARYLFDIMPER 58
           AR++FD  P R D    N MI  Y+                R + F  ++ + F ++ + 
Sbjct: 39  ARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDS-FTFSVLAKS 97

Query: 59  ------------------------DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
                                   D      ++  YAK G+M+ A +LF+ M  R+ VSW
Sbjct: 98  CALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSW 157

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
            A+I G++++GD+ NA + FD+M  +DSA+ + ++   ++ G++  A ++  +   R   
Sbjct: 158 TALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERS-- 215

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
               V ++  +I GY   G ++ AR LFD +P            ++N+ SWN+MI  Y +
Sbjct: 216 ----VVSWTIMIYGYSSNGNLDSARSLFDAMP------------EKNLFSWNAMISGYRQ 259

Query: 215 AGDVVSAREIFEQM-----LERDTFSWNTMISGY--IHVLDMEEASNLFVKMPHPDTLT- 266
                 A ++F +M     LE D  +  +++     +  LD+    + FV+    D  T 
Sbjct: 260 NKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATN 319

Query: 267 -WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
              A++  YA+ G +  +   F  MP+K   SWN++I     N   + A+ LF++M  +G
Sbjct: 320 VGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKG 379

Query: 326 EKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEA 383
             P+  T   +LS    SG+V+         M    + P +     ++ +  R G + EA
Sbjct: 380 FMPNEITMIGVLSACNHSGLVE-EGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEA 438

Query: 384 RIIFEEMKLLKNVVSWNAMIGGC 406
             + E M    N +  ++ +  C
Sbjct: 439 EKLMESMPYEANGIILSSFLFAC 461



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 161/342 (47%), Gaps = 40/342 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I GYV+  +M  A KLFD+M ++D  ++N MI  Y+     G +  AR LFD MPER  
Sbjct: 160 LIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKL---GDMCSARKLFDEMPERSV 216

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  +I GY+  G ++ A  LF++MP +N+ SWNAMISG+ QN     A++ F  M   
Sbjct: 217 VSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQST 276

Query: 121 -----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN---TLIVGYGQR 172
                D  ++ +++  +   G LD    V      R    + L RA N    LI  Y + 
Sbjct: 277 TSLEPDEVTIVSVLPAIADLGALDLGGWV-----HRFVRRKKLDRATNVGTALIDMYAKC 331

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER- 231
           G + ++R +FD +P            ++   SWN++I  +A  G    A  +F +M  + 
Sbjct: 332 GEIVKSRGVFDNMP------------EKETASWNALINAFAINGRAKEALGLFMEMNHKG 379

Query: 232 ---DTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELAL 284
              +  +   ++S   H   +EE    F  M      P    +  MV    + G L+ A 
Sbjct: 380 FMPNEITMIGVLSACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAE 439

Query: 285 DFFKRMP-QKNLVSWNSMIAGCETNKDY---EGAIKLFIQMQ 322
              + MP + N +  +S +  C  +KD    E  +K  I+M+
Sbjct: 440 KLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKME 481


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 180/533 (33%), Positives = 295/533 (55%), Gaps = 39/533 (7%)

Query: 64  NTVISGYAKTGEMEEALRLF-NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG--- 119
            ++I+ Y++  +MEEA+ +F +    RNV ++NA+I+GF+ NG  A+  +F+ RM     
Sbjct: 14  TSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGV 73

Query: 120 -RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
             D  +   +V    +  E+ +    L K G   +     V   + L+  Y +    E+A
Sbjct: 74  MPDKFTFPCVVRACCEFMEVRKIHGCLFKMGLELN-----VFVGSALVNTYLKVDGTEDA 128

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTF 234
            K+F+++P            +R++V WN+MI  Y K G +  A  +F++M E       F
Sbjct: 129 EKVFEELP------------ERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRF 176

Query: 235 SWNTMISGYIHVLDMEEA---SNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRM 290
           +  +++S    + D+        +  KM +   +   NA++  Y +  + E AL  F+ +
Sbjct: 177 TTTSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMI 236

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
            +K+L SWNS+I+  E   D++G ++LF +M      PD  T +++L   S +  L  G 
Sbjct: 237 NEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGR 296

Query: 351 QIHQMVTKTVI------PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           +IH  +    +       DV +NNA++ MYA+CG +  A IIF+ M+  K+V SWN MI 
Sbjct: 297 EIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRN-KDVASWNIMIM 355

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           G A HG+ TEAL++F  M   ++ P  +TF+ VLSAC+HAG V +GR     M  E+G+ 
Sbjct: 356 GYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVI 415

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           P IEH+  ++D++GR G L +A DL + +P E +  +W ALLGACR+H N EL  V  E 
Sbjct: 416 PTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALLGACRLHGNAELGNVVGEK 475

Query: 525 LMKVEPEN--STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           + ++EP++  S  Y+L+ ++Y  VGR+++A EVR  MK  N+KK  G SW++ 
Sbjct: 476 ITQLEPKHCGSGSYILMSSLYGVVGRYEEALEVRRTMKEQNVKKTPGCSWIEL 528



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 120/474 (25%), Positives = 208/474 (43%), Gaps = 85/474 (17%)

Query: 1   MISGYVKRREMAKARKLF-DEMPQRDVVSWNVMISGYIS----SRGSGFLEEARYLFDIM 55
           +I+ Y +  +M +A  +F D   +R+V ++N +I+G+++    + G  F +  R +  +M
Sbjct: 16  LINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSV-GVM 74

Query: 56  PE--------RDCVTW----------------------NTVISGYAKTGEMEEALRLFNS 85
           P+        R C  +                      + +++ Y K    E+A ++F  
Sbjct: 75  PDKFTFPCVVRACCEFMEVRKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKVFEE 134

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS-----ALVSGLIQNGELDE 140
           +P R+VV WNAMI+G+ + G +  A+  F RM G +  SLS     +++S L   G+++ 
Sbjct: 135 LPERDVVLWNAMINGYTKIGHLNKAVVVFKRM-GEEGISLSRFTTTSILSILTSMGDINN 193

Query: 141 AAR---VLVKCG-SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
                 ++ K G S C      V   N LI  YG+    E+A  +F+ I           
Sbjct: 194 GRAIHGIVTKMGYSSC------VAVSNALIDMYGKCKHTEDALMIFEMIN---------- 237

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEA 252
             ++++ SWNS+I  + +  D      +F +ML      D  +   ++    H+  +   
Sbjct: 238 --EKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHG 295

Query: 253 SNLFVKM---------PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
             +   M            D L  NA++  YA+ G ++ A   F  M  K++ SWN MI 
Sbjct: 296 REIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIM 355

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT---- 359
           G   +     A+ +F +M     KPD  TF  +LS  S    +H G      +T+     
Sbjct: 356 GYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQG---RSFLTRMELEF 412

Query: 360 -VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
            VIP +     +I M  R G + EA  + + + L  N++ W A++G C  HG A
Sbjct: 413 GVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALLGACRLHGNA 466



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 5/152 (3%)

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           MVT   I       +LI MY+RC  + EA ++F +    +NV ++NA+I G  ++G A +
Sbjct: 1   MVTSGFIHLPSSITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAAD 60

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
             + +K MRS  V+P   TF  V+ AC     +E  + H    + + G+E  +   ++LV
Sbjct: 61  GFQFYKRMRSVGVMPDKFTFPCVVRACCE--FMEVRKIH--GCLFKMGLELNVFVGSALV 116

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +   +    EDA  + + +P E D  +W A++
Sbjct: 117 NTYLKVDGTEDAEKVFEELP-ERDVVLWNAMI 147


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 187/624 (29%), Positives = 315/624 (50%), Gaps = 65/624 (10%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGY--------------------ISSRGSGF 44
           ++ R ++A AR++FD +P  D  ++N +I  Y                    ++     F
Sbjct: 44  HISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTF 103

Query: 45  ---LEEARYLFDIMPER-------------DCVTWNTVISGYAKTGEMEEALRLFNSMPA 88
              L+    L D+   R             D      +I  Y +      A  +F  MP 
Sbjct: 104 PFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPM 163

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELDEAAR 143
           R+VV+WNAM++G+  +G   +AI     M        ++++L +L+  L Q+G L +   
Sbjct: 164 RDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTS 223

Query: 144 VLVKCGSRC-DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
           +   C   C +  E+ V     L+  Y +  ++  A ++F  +PV            RN 
Sbjct: 224 IHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPV------------RND 271

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQML-ERDTFSWNTMISGYIHVL----DMEEASNLFV 257
           V+W+++I  +     +  A  +F+ ML E   F   T ++  + V     D+   + L  
Sbjct: 272 VTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHA 331

Query: 258 KMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
            +     H D    N+++S YA+ G +  A  FF  +  K+ +S+ ++++GC  N   E 
Sbjct: 332 LIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEE 391

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALIT 372
           A  +F +MQ    +PD  T  S++   S +  L  G   H  ++ + +  +  I N+LI 
Sbjct: 392 AFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLID 451

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MYA+CG I  +R +F++M   ++VVSWN MI G   HG   EA  LF  M++    P  +
Sbjct: 452 MYAKCGKIDLSRQVFDKMPA-RDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDV 510

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TFI +++AC+H+GLV EG+  F +M ++YGI PR+EH+  +VD++ R G L++A   I+ 
Sbjct: 511 TFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQS 570

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
           MP + D  VWGALLGACR+H N++L +  +  + K+ PE +  +VLL N+++  GR+D+A
Sbjct: 571 MPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEA 630

Query: 553 NEVRLLMKSNNIKKPTGYSWVDFS 576
            EVR++ K    KK  GYSW++ +
Sbjct: 631 AEVRIIQKVKGFKKSPGYSWIEIN 654



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 129/535 (24%), Positives = 216/535 (40%), Gaps = 134/535 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS--------------SRGSGFLE 46
           +I  Y++      AR +F +MP RDVV+WN M++GY +                  G   
Sbjct: 141 LIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRP 200

Query: 47  EARYLFDIMP------------------ERDCVTWN--------TVISGYAKTGEMEEAL 80
            A  L  ++P                   R C+  N         ++  YAK  ++  A 
Sbjct: 201 NASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYAC 260

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRDSASLSALVSGLIQNGEL 138
           R+F+ MP RN V+W+A+I GF+    +  A   F  M   G    S +++ S L     L
Sbjct: 261 RVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASL 320

Query: 139 ------DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV----- 187
                  +   ++ K G   D     + A N+L+  Y + G + EA   FD+I V     
Sbjct: 321 ADLHMGTQLHALIAKSGIHAD-----LTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS 375

Query: 188 ----------NCDRGEGNVRFKR--------NIVSWNSMI-------------------- 209
                     N    E  + FK+        +I +  S+I                    
Sbjct: 376 YGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVI 435

Query: 210 ---------MC------YAKAGDVVSAREIFEQMLERDTFSWNTMISGY-IHVLDMEEAS 253
                    +C      YAK G +  +R++F++M  RD  SWNTMI+GY IH L  +EA+
Sbjct: 436 IRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLG-KEAT 494

Query: 254 NLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            LF+ M +    PD +T+  +++  +  G +     +F  M  K  +        C  + 
Sbjct: 495 TLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDL 554

Query: 310 DYEGAI--KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPIN 367
              G +  + +  +Q    K D   + ++L       ++ LG Q+ +++ K + P+   N
Sbjct: 555 LARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQK-LGPEGTGN 613

Query: 368 NALIT-MYARCGAIVEA---RIIFEEMKLLKNV--VSW-------NAMIGGCASH 409
             L++ +++  G   EA   RII +++K  K     SW       +A +GG  SH
Sbjct: 614 FVLLSNIFSAAGRFDEAAEVRII-QKVKGFKKSPGYSWIEINGSLHAFVGGDQSH 667



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 117/254 (46%), Gaps = 16/254 (6%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D   W   +  +   G L LA   F R+P  +  ++N++I        +  AI L+  M 
Sbjct: 33  DKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSML 92

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIV 381
                P+++TF  +L   S +VDL  G  IH       +  D+ ++ ALI +Y RC    
Sbjct: 93  RFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFG 152

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL-PTYITFISVLSA 440
            AR +F +M  +++VV+WNAM+ G A+HG    A+     M+    L P   T +S+L  
Sbjct: 153 PARNVFAKMP-MRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPL 211

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEH-------FASLVDIVGRHGRLEDAMDLIKGM 493
            A  G + +G     + ++ Y +   +E          +L+D+  +  +L  A  +  GM
Sbjct: 212 LAQHGALFQG-----TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGM 266

Query: 494 PFEPDKAVWGALLG 507
           P   D   W AL+G
Sbjct: 267 PVRND-VTWSALIG 279


>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 186/533 (34%), Positives = 286/533 (53%), Gaps = 51/533 (9%)

Query: 48  ARYLFDIMPERD-CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGD 106
           AR +FD  P RD     N++I  Y    +  E+  L+  +  R   S+            
Sbjct: 213 ARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDL--RRNTSFTP---------- 260

Query: 107 VANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYN 163
                         DS + S L      N  + E   +   +V  G   D     + A  
Sbjct: 261 --------------DSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLD-----LYAAT 301

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
            L+  Y + G+++ ARKLFD++              R+ VSW ++I  Y ++GD+ +A +
Sbjct: 302 ALVDMYAKFGKMDCARKLFDEM------------IDRSQVSWTALIGGYVRSGDMDNAGK 349

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           +F+QM+E+D+ ++NTMI  Y+ + DM  A  LF +MP    ++W  M+ GY+  GNL+ A
Sbjct: 350 LFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSA 409

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ-VEGEKPDRHTFSSILSMSSG 342
              F  MP+KNL SWN+MI+G   NK    A+KLF +MQ     +PD  T  S+L   + 
Sbjct: 410 RSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIAD 469

Query: 343 IVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  L LG  +H+ V +  +     +  ALI MYA+CG IV++R +F+ M   K   SWNA
Sbjct: 470 LGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMP-EKETASWNA 528

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           +I   A +G A EAL LF  M     +P  IT I VLSAC H+GLVEEG++ FK+M  E+
Sbjct: 529 LINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAM-EEF 587

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           G+ P+IEH+  +VD++GR G L++A  L++ MP+E +  +  + L AC    +V  A+  
Sbjct: 588 GLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERV 647

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            +  +K+E  N   Y++L N+YA+  RW +A+EV+ LM+ N +KK  G S ++
Sbjct: 648 LKEAIKMEAWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIE 700



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 153/311 (49%), Gaps = 38/311 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K  +M  ARKLFDEM  R  VSW  +I GY+ S   G ++ A  LFD M E+D 
Sbjct: 303 LVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRS---GDMDNAGKLFDQMIEKDS 359

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
             +NT+I  Y K G+M  A +LF+ MP R+VVSW  MI G+  NG++ +A   FD MP +
Sbjct: 360 AAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEK 419

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  S +A++SG  QN +  EA ++  +  S      D V   + L               
Sbjct: 420 NLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVL--------------- 464

Query: 181 LFDKIPVNCDRGEGNV-----------RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
                P   D G  ++           +  R      ++I  YAK G++V +R +F+ M 
Sbjct: 465 -----PAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMP 519

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALD 285
           E++T SWN +I+ +      +EA  LF++M H    P+ +T   ++S     G +E    
Sbjct: 520 EKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKR 579

Query: 286 FFKRMPQKNLV 296
           +FK M +  L 
Sbjct: 580 WFKAMEEFGLT 590



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 196/444 (44%), Gaps = 70/444 (15%)

Query: 14  ARKLFDEMPQR-DVVSWNVMISGYIS--------------SRGSGFLEEARYLFDIMPER 58
           AR++FD  P R D    N MI  Y+                R + F  ++ + F ++ + 
Sbjct: 213 ARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDS-FTFSVLAKS 271

Query: 59  ------------------------DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
                                   D      ++  YAK G+M+ A +LF+ M  R+ VSW
Sbjct: 272 CALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSW 331

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
            A+I G++++GD+ NA + FD+M  +DSA+ + ++   ++ G++  A ++  +   R   
Sbjct: 332 TALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERS-- 389

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
               V ++  +I GY   G ++ AR LFD +P            ++N+ SWN+MI  Y +
Sbjct: 390 ----VVSWTIMIYGYSSNGNLDSARSLFDAMP------------EKNLFSWNAMISGYXQ 433

Query: 215 AGDVVSAREIFEQM-----LERDTFSWNTMISGY--IHVLDMEEASNLFVKMPHPDTLT- 266
                 A ++F +M     LE D  +  +++     +  LD+    + FV+    D  T 
Sbjct: 434 NKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATN 493

Query: 267 -WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
              A++  YA+ G +  +   F  MP+K   SWN++I     N   + A+ LF++M  +G
Sbjct: 494 VGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKG 553

Query: 326 EKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEA 383
             P+  T   +LS    SG+V+         M    + P +     ++ +  R G + EA
Sbjct: 554 FMPNEITMIGVLSACNHSGLVE-EGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEA 612

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCA 407
             + E M    N +  ++ +  C 
Sbjct: 613 EKLMESMPYEANGIILSSFLFACG 636



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 161/343 (46%), Gaps = 40/343 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I GYV+  +M  A KLFD+M ++D  ++N MI  Y+     G +  AR LFD MPER  
Sbjct: 334 LIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKL---GDMCSARKLFDEMPERSV 390

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  +I GY+  G ++ A  LF++MP +N+ SWNAMISG+ QN     A++ F  M   
Sbjct: 391 VSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQST 450

Query: 121 -----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN---TLIVGYGQR 172
                D  ++ +++  +   G LD    V      R    + L RA N    LI  Y + 
Sbjct: 451 TSLEPDEVTIVSVLPAIADLGALDLGGWV-----HRFVRRKKLDRATNVGTALIDMYAKC 505

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER- 231
           G + ++R +FD +P            ++   SWN++I  +A  G    A  +F +M  + 
Sbjct: 506 GEIVKSRGVFDNMP------------EKETASWNALINAFAINGRAKEALGLFMEMNHKG 553

Query: 232 ---DTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELAL 284
              +  +   ++S   H   +EE    F  M      P    +  MV    + G L+ A 
Sbjct: 554 FMPNEITMIGVLSACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAE 613

Query: 285 DFFKRMP-QKNLVSWNSMIAGCETNKDY---EGAIKLFIQMQV 323
              + MP + N +  +S +  C  +KD    E  +K  I+M+ 
Sbjct: 614 KLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEA 656


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 208/715 (29%), Positives = 330/715 (46%), Gaps = 145/715 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I+ YV    +A ARKLF ++P  +VV+WNVMISG+      GF EEA   F  + +   
Sbjct: 249 VINAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKR---GFAEEAISFFLELKKTGL 305

Query: 59  -------------------------------------DCVTWNTVISGYAKTGEMEEALR 81
                                                +    + +++ YAK  +M+ A +
Sbjct: 306 KATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQ 365

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGE 137
           +FNS+  RN+V WNAM+ GF QNG     +EFF  M    P  D  + +++ S       
Sbjct: 366 VFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHY 425

Query: 138 LDEA------------------ARVLVKCGSRCDGGEDLVR-----------AYNTLIVG 168
           LD                    A  LV   ++    ++  +           ++N +IVG
Sbjct: 426 LDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVG 485

Query: 169 YGQRGRVEEARKLFDKIPVN---------------------------CDRGEGNVRFKRN 201
           Y Q    +EA  +F ++  N                           C      V    +
Sbjct: 486 YVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTS 545

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP- 260
             + +S+I  Y K G V++AR++F  M  R+  S N +I+GY  +  +EEA +LF ++  
Sbjct: 546 TCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYT-MSHLEEAIHLFQEIQM 604

Query: 261 ---HPDTLTWNAMVSGYAQIGNLELALD-------------------------------- 285
               P  +T+  ++ G      L L                                   
Sbjct: 605 VGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRFA 664

Query: 286 -----FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
                F +    K LV W ++I+G      +E A++ +  M+ +   PD+ TF+S+L   
Sbjct: 665 DSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRAC 724

Query: 341 SGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           +G+  L  G ++H ++  T    D    ++LI MYA+CG +  +  +F EM    +V+SW
Sbjct: 725 AGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISW 784

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N+MI G A +G+A EALE+FK M    ++P  +TF+ VLSAC+HAG V EGR+ F  MVN
Sbjct: 785 NSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMVN 844

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
            Y ++PR++H   +VDI+GR G L +A + I  +  + D  +W  LLGACR H +    +
Sbjct: 845 NYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHGDEVRGK 904

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            AA  LM+++P++S+ YVLL  +YA+   W  A+ +R  MK   +KK  GYSW++
Sbjct: 905 RAANKLMELKPQSSSSYVLLSGLYAESENWSGADSLRREMKLKGVKKLPGYSWIE 959



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 182/676 (26%), Positives = 292/676 (43%), Gaps = 117/676 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           +I  Y K R +  AR +FD     D VSW  +I+GY+     GF  EA  +FD M     
Sbjct: 183 LIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRD---GFPMEAVKVFDKMQRVGH 239

Query: 58  -RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
             D +   TVI+ Y   G + +A +LF  +P  NVV+WN MISG  + G    AI FF  
Sbjct: 240 VPDQIALVTVINAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLE 299

Query: 117 M------PGRDS--------ASLSALVSGLIQNGE-----LDEAARV---LVKCGSRCDG 154
           +        R S        ASLS L  G + + +     LD+   V   LV   ++C  
Sbjct: 300 LKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSK 359

Query: 155 -----------GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE---------- 193
                      GE  +  +N ++ G+ Q G  +E  + F  +  +  + +          
Sbjct: 360 MDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSA 419

Query: 194 ----------GNV-------RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
                     G +       +F  N+   N+++  YAK+G +  AR+ FE M   D  SW
Sbjct: 420 CASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSW 479

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSG------------------- 273
           N +I GY+     +EA  +F +M      PD ++  ++VS                    
Sbjct: 480 NAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVK 539

Query: 274 ----------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                           Y + G +  A D F  MP +N+VS N++IAG  T    E AI L
Sbjct: 540 VGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAG-YTMSHLEEAIHL 598

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNALITMYA 375
           F ++Q+ G KP   TF+ +L    G   L+LG QIH  V K   +     +  +L+ MY 
Sbjct: 599 FQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYM 658

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
                 ++  +F E++  K +V W A+I G A      +AL+ ++ MRS  +LP   TF 
Sbjct: 659 NSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFA 718

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           SVL ACA    ++ G Q   S++   G        +SL+D+  + G ++ ++ +   MP 
Sbjct: 719 SVLRACAGMSSLQTG-QEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPR 777

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP----YVLLYNMYADVGRWDD 551
                 W +++     +     A+ A E   ++E ++  P    ++ + +  +  GR  +
Sbjct: 778 RNSVISWNSMIVGLAKNG---YAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSE 834

Query: 552 ANEVRLLMKSNNIKKP 567
             +V  LM +N   +P
Sbjct: 835 GRKVFDLMVNNYKLQP 850



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 149/305 (48%), Gaps = 11/305 (3%)

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
           L  N +V  Y + GN++ A   F R+ +K++ +WNS+++    +  +   ++ F+ M   
Sbjct: 77  LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNH 136

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPI-NNALITMYARCGAIVEA 383
           G +P+  TF+ +LS  SG+ D++ G Q+H  V K            LI MYA+C  + +A
Sbjct: 137 GVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDA 196

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
           R++F+   L  + VSW  +I G    GF  EA+++F  M+    +P  I  ++V++A   
Sbjct: 197 RLVFDG-ALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVA 255

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL---IKGMPFEPDKA 500
            G + + R+ F  + N     P +  +  ++    + G  E+A+     +K    +  ++
Sbjct: 256 LGRLADARKLFTQIPN-----PNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRS 310

Query: 501 VWGALLGACRVHNNVEL-AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
             G++L A    + +   + V A+A+ +   +N      L NMYA   + D A +V   +
Sbjct: 311 SLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSL 370

Query: 560 KSNNI 564
              NI
Sbjct: 371 GERNI 375


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 175/563 (31%), Positives = 288/563 (51%), Gaps = 70/563 (12%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA-- 123
           +IS Y+K+G + +A  +F  +P +N+ SWNA+   +  +    + ++ F  +   +S   
Sbjct: 44  LISFYSKSGSIRDAYNVFGKIPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDV 103

Query: 124 ---------SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
                    SL AL S    +G   E    +++ G   D     +   N LI  Y +   
Sbjct: 104 KPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLEYD-----IFVVNALITFYSRCDE 158

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----- 229
           +  AR +FD++P            +R+ VSWN+M+  Y++ G     +E+F  ML     
Sbjct: 159 LVLARIMFDRMP------------ERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEV 206

Query: 230 -----------------------------------ERDTFSWNTMISGYIHVLDMEEASN 254
                                              + D   WN +I  Y     ++ A  
Sbjct: 207 KPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARE 266

Query: 255 LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
           LF +MP  D +T+ +M+SGY   G +  A+D F+   +  L +WN++I+G   N   EGA
Sbjct: 267 LFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGA 326

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITM 373
           + +F  MQ  G +P+  T +SIL + S    L  G +IH   +  T   ++ +  A+I  
Sbjct: 327 VDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDS 386

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           YA+CG +  A+++F+++K  +++++W ++I   A HG A  AL LF  M +  + P  +T
Sbjct: 387 YAKCGYLHGAQLVFDQIKG-RSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVT 445

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           F SVL+ACAH+G ++E  + F  ++ EYGI+P +EH+A +V ++ R G+L DA++ I  M
Sbjct: 446 FTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKM 505

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           P EP   VWGALL    V  +VEL +   + L ++EPEN+  YV++ N+Y+  GRW DA+
Sbjct: 506 PLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDAD 565

Query: 554 EVRLLMKSNNIKKPTGYSWVDFS 576
            +R LMK   +KK  G SW++ S
Sbjct: 566 TIRDLMKEVRLKKIPGNSWIETS 588



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 142/263 (53%), Gaps = 9/263 (3%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF--- 318
           PD    + ++S Y++ G++  A + F ++P+KN+ SWN++      +  +   +KLF   
Sbjct: 36  PDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALFISYTLHNMHTDLLKLFSSL 95

Query: 319 IQMQVEGEKPDRHTFS-SILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYAR 376
           +       KPDR T + S+ +++S   +  L  ++H  + +  +  D+ + NALIT Y+R
Sbjct: 96  VNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSR 155

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-RSFKVLPTYITFI 435
           C  +V ARI+F+ M   ++ VSWNAM+ G +  G   E  ELF+ M  S +V P  +T +
Sbjct: 156 CDELVLARIMFDRMP-ERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAV 214

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           SVL ACA +  +  G +  +  VNE  I+  +  + +++ +  + G L+ A +L + MP 
Sbjct: 215 SVLQACAQSNDLTFGIEVHR-FVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMP- 272

Query: 496 EPDKAVWGALLGACRVHNNVELA 518
           E D   + +++    VH  V  A
Sbjct: 273 EKDGITYCSMISGYMVHGFVNQA 295



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 184/426 (43%), Gaps = 99/426 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           +I+ Y +  E+  AR +FD MP+RD VSWN M++GY  S+G  + EE + LF +M     
Sbjct: 149 LITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGY--SQGGSY-EECKELFRVMLSSVE 205

Query: 56  -----------------------------------PERDCVTWNTVISGYAKTGEMEEAL 80
                                               + D   WN VI  YAK G ++ A 
Sbjct: 206 VKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYAR 265

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
            LF  MP ++ +++ +MISG++ +G V  A++ F         + +A++SGL+QN   + 
Sbjct: 266 ELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEG 325

Query: 141 AA---RVLVKCGSRCD------------------GGEDL------------VRAYNTLIV 167
           A    R +   G R +                  GG+++            +     +I 
Sbjct: 326 AVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIID 385

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y + G +  A+ +FD+I              R++++W S+I  YA  GD   A  +F +
Sbjct: 386 SYAKCGYLHGAQLVFDQIK------------GRSLIAWTSIISAYAVHGDANVALSLFYE 433

Query: 228 ML----ERDTFSWNTMISGYIHVLDMEEASNLF-VKMP----HPDTLTWNAMVSGYAQIG 278
           ML    + D  ++ ++++   H  +++EA  +F V +P     P    +  MV   ++ G
Sbjct: 434 MLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAG 493

Query: 279 NLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSI 336
            L  A++F  +MP +     W +++ G     D E    +F ++ ++E E    +   + 
Sbjct: 494 KLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMAN 553

Query: 337 LSMSSG 342
           L   SG
Sbjct: 554 LYSQSG 559



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 14/171 (8%)

Query: 346 LHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
             +G Q+H ++V  +V+PD  + + LI+ Y++ G+I +A  +F ++   KN+ SWNA+  
Sbjct: 19  FRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIP-RKNIFSWNALFI 77

Query: 405 GCASHGFATEALELFKSM---RSFKVLPTYITFISVLSACA----HAGLVEEGRQHFKSM 457
               H   T+ L+LF S+    S  V P   T    L A A    ++GL +E      S 
Sbjct: 78  SYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKE----VHSF 133

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           +   G+E  I    +L+    R   L  A  +   MP E D   W A+L  
Sbjct: 134 ILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMP-ERDTVSWNAMLAG 183


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 196/625 (31%), Positives = 318/625 (50%), Gaps = 78/625 (12%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER--DCV------ 61
            +A ARKLFDEMPQ  ++S+N++I  Y+     G   +A  +F  M      CV      
Sbjct: 64  HIAYARKLFDEMPQSSLLSYNIVIRMYVRD---GLYHDAINVFIRMVSEGIKCVPDGYTY 120

Query: 62  -------------------------TW--------NTVISGYAKTGEMEEALRLFNSMPA 88
                                    +W        N +++ Y   G +E A  +F+ M  
Sbjct: 121 PFVAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKN 180

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSAL--VSGLIQNGELDEAA 142
           R+V+SWN MISG+ +NG + +A+  FD M       D A++ ++  V G ++  E+    
Sbjct: 181 RDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNV 240

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
             LV+   R     D +   N L+  Y + GR++EAR +F ++             +R++
Sbjct: 241 HKLVE-EKRLG---DKIEVKNALVNMYLKCGRMDEARFVFGRME------------RRDV 284

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNL--- 255
           ++W  MI  Y + GDV +A E+   M    +  +  +  +++S     L + +   L   
Sbjct: 285 ITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGW 344

Query: 256 -FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
              +    D +   +++S YA+  +++L    F    + +   W+++IAGC  N+    A
Sbjct: 345 AIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDA 404

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITM 373
           + LF +M+ E  +P+  T +S+L   + + DL   M IH  +TKT  +  +     L+ +
Sbjct: 405 LDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHV 464

Query: 374 YARCGAIVEARIIF---EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           Y++CG +  A  IF   +E    K+VV W A+I G   HG    AL++F  M    V P 
Sbjct: 465 YSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPN 524

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            ITF S L+AC+H+GLVEEG   F  M+  Y    R  H+  +VD++GR GRL++A +LI
Sbjct: 525 EITFTSALNACSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLI 584

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
             +PFEP   +WGALL AC  H NV+L ++AA  L ++EPEN+  YVLL N+YA +GRW 
Sbjct: 585 TTIPFEPTSTIWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWK 644

Query: 551 DANEVRLLMKSNNIKKPTGYSWVDF 575
           D  +VR +M++  ++K  G+S ++ 
Sbjct: 645 DMEKVRNMMENVGLRKKPGHSTIEI 669



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 193/426 (45%), Gaps = 59/426 (13%)

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           V+ Y +L+  Y     + + + L      +C    G  R   +I+S  ++ + YA  G +
Sbjct: 15  VKQYQSLLNHYAATQSISKTKAL------HCHVITGG-RVSGHILS--TLSVTYALCGHI 65

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH------PDTLTW----- 267
             AR++F++M +    S+N +I  Y+      +A N+F++M        PD  T+     
Sbjct: 66  AYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAK 125

Query: 268 ------------------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
                                         NA+++ Y   G +E+A + F  M  ++++S
Sbjct: 126 AAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVIS 185

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WN+MI+G   N     A+ +F  M  EG  PD  T  S+L +   +  L +G  +H++V 
Sbjct: 186 WNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVE 245

Query: 358 KTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           +  + D + + NAL+ MY +CG + EAR +F  M+  ++V++W  MI G    G    AL
Sbjct: 246 EKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRME-RRDVITWTCMINGYIEDGDVENAL 304

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR-QHFKSMVNEYGIEPRIEHFASLVD 475
           EL + M+   V P  +T  S++SAC  A  + +G+  H  ++  +   +  IE   SL+ 
Sbjct: 305 ELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIE--TSLIS 362

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           +  +   ++    +  G         W A++  C V N  EL + A +   ++  E+  P
Sbjct: 363 MYAKCKHIDLCFRVFSGAS-RNHTGPWSAIIAGC-VQN--ELVRDALDLFKRMRREDVEP 418

Query: 536 YVLLYN 541
            +   N
Sbjct: 419 NIATLN 424



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/466 (21%), Positives = 203/466 (43%), Gaps = 74/466 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           +++ Y+    +  AR +FD M  RDV+SWN MISGY     +G++ +A  +FD M     
Sbjct: 158 LLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYR---NGYMNDALMMFDWMVNEGV 214

Query: 56  -PERDCVTW---------------------------------NTVISGYAKTGEMEEALR 81
            P+   +                                   N +++ Y K G M+EA  
Sbjct: 215 DPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARF 274

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F  M  R+V++W  MI+G++++GDV NA+E    M       ++ ++++LVS      +
Sbjct: 275 VFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALK 334

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           L++  + L     R     D++    +LI  Y +   ++   ++F     N         
Sbjct: 335 LND-GKCLHGWAIRQKVCSDII-IETSLISMYAKCKHIDLCFRVFSGASRN--------- 383

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
              +   W+++I    +   V  A ++F++M    +E +  + N+++  Y  + D+ +  
Sbjct: 384 ---HTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTM 440

Query: 254 NLFVKMPHPDTLT----WNAMVSGYAQIGNLELALDFF----KRMPQKNLVSWNSMIAGC 305
           N+   +     ++       +V  Y++ G LE A   F    ++   K++V W ++I+G 
Sbjct: 441 NIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGY 500

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPD 363
             + D   A+++F++M   G  P+  TF+S L+    SG+V+  L +    +     +  
Sbjct: 501 GMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFSFMLEHYKTLAR 560

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
                 ++ +  R G + EA  +   +        W A++  C +H
Sbjct: 561 SNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTIWGALLAACVTH 606


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 185/588 (31%), Positives = 299/588 (50%), Gaps = 84/588 (14%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR---NVVSWNAMISGFLQNGDVANAIEF 113
           E +    N +++ Y++ G +EEA  +F+ +  R   +V+SWN+++S  +++ +   A++ 
Sbjct: 149 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 208

Query: 114 FDRM-------PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-VRAYNTL 165
           F +M       P  + + + ++V+ L   G L    +     G+    G  L V   N L
Sbjct: 209 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNAL 268

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           I  Y + G +E A K+F+ +              +++VSWN+M+  Y+++G+  +A E+F
Sbjct: 269 IDAYAKCGLMENAVKVFNMMEF------------KDVVSWNAMVAGYSQSGNFKAAFELF 316

Query: 226 EQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKM------PH-------------- 261
           + M    +  D  +W  +I+GY       EA N+F +M      P+              
Sbjct: 317 KNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASL 376

Query: 262 -----------------------------PDTLTWNAMVSGYAQIGNLELALDFFKRMP- 291
                                         D + +NA++  Y++  + + A   F  +P 
Sbjct: 377 GAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPL 436

Query: 292 -QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE--GEKPDRHTFSSILSMSSGIVDLHL 348
            ++N+V+W  MI G     D   A+KLF++M  E  G  P+ +T S IL   + +  + +
Sbjct: 437 EERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRI 496

Query: 349 GMQIHQMVTKTVIPDVP---INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
           G QIH  V +    D     + N LI MY++CG +  AR +F+ M   K+ +SW +M+ G
Sbjct: 497 GKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQ-KSAISWTSMMTG 555

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
              HG  +EAL++F  MR    +P  ITF+ VL AC+H G+V++G  +F SM  +YG+ P
Sbjct: 556 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTP 615

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
           R EH+A  +D++ R GRL+ A   +K MP EP   VW ALL ACRVH+NVELA+ A   L
Sbjct: 616 RAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 675

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +++  EN   Y L+ N+YA  GRW D   +R LMK + IKK  G SWV
Sbjct: 676 VEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWV 723



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 155/555 (27%), Positives = 231/555 (41%), Gaps = 131/555 (23%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
           V++ Y   G  + AL +   +     V WN +I   ++ G + +AI    RM  R    L
Sbjct: 57  VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRML-RAGTRL 115

Query: 126 S--ALVSGLIQNGELDEAARVLVKCGSR------CDGGEDLVRAYNTLIVGYGQRGRVEE 177
               L   L   GEL        +CGS       C+G E  V   N L+  Y + G +EE
Sbjct: 116 DHFTLPHVLKACGELPS-----YRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEE 170

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML-------- 229
           A  +FD+I     RG  +V      +SWNS++  + K+ +  +A ++F +M         
Sbjct: 171 ASMIFDEIT---QRGIDDV------ISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPT 221

Query: 230 -ER------------------------------------DTFSWNTMISGYIHVLDMEEA 252
            ER                                    D F  N +I  Y     ME A
Sbjct: 222 NERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENA 281

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN----LVSWNSMIAGCETN 308
             +F  M   D ++WNAMV+GY+Q GN + A + FK M ++N    +V+W ++IAG    
Sbjct: 282 VKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQR 341

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI------- 361
                A+ +F QM   G  P+  T  S+LS  + +     GM+IH    K  +       
Sbjct: 342 GCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDF 401

Query: 362 ----PDVPINNALITMYARCGAIVEARIIFEEMKL-LKNVVSWNAMIGGCASHGFATEAL 416
                D+ + NALI MY++C +   AR IF+++ L  +NVV+W  MIGG A +G + +AL
Sbjct: 402 GGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDAL 461

Query: 417 ELFKSMRS--FKVLPTYITFISVLSACAH------------------------------- 443
           +LF  M S  + V P   T   +L ACAH                               
Sbjct: 462 KLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCL 521

Query: 444 ------AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM---P 494
                  G V+  R  F SM  +  I      + S++   G HGR  +A+D+   M    
Sbjct: 522 INMYSKCGDVDTARHVFDSMSQKSAIS-----WTSMMTGYGMHGRGSEALDIFDKMRKAG 576

Query: 495 FEPDKAVWGALLGAC 509
           F PD   +  +L AC
Sbjct: 577 FVPDDITFLVVLYAC 591



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 127/515 (24%), Positives = 212/515 (41%), Gaps = 116/515 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR---DVVSWNVMISGYISS------------------ 39
           +++ Y +   + +A  +FDE+ QR   DV+SWN ++S ++ S                  
Sbjct: 158 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVH 217

Query: 40  -RGSGFLEEARYLFDIMPE-----------------------RDCVTWNTVISGYAKTGE 75
            + +    +   + +I+P                         D    N +I  YAK G 
Sbjct: 218 EKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGL 277

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSG 131
           ME A+++FN M  ++VVSWNAM++G+ Q+G+   A E F  M       D  + +A+++G
Sbjct: 278 MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAG 337

Query: 132 LIQNGELDEAAR-------------------VLVKCGS----------------RC---- 152
             Q G   EA                     VL  C S                 C    
Sbjct: 338 YSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTL 397

Query: 153 ---DGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
               GGED  +  YN LI  Y +    + AR +FD IP+           +RN+V+W  M
Sbjct: 398 DNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLE----------ERNVVTWTVM 447

Query: 209 IMCYAKAGDVVSAREIFEQMLERD--------TFSWNTMISGYIHVLDMEEASNLFVKMP 260
           I  +A+ GD   A ++F +M+           T S   M   ++  + + +  + +V   
Sbjct: 448 IGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRH 507

Query: 261 HP-DTLTW---NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
           H  D+  +   N +++ Y++ G+++ A   F  M QK+ +SW SM+ G   +     A+ 
Sbjct: 508 HQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALD 567

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINNALITMY 374
           +F +M+  G  PD  TF  +L   S  G+VD  L           + P        I + 
Sbjct: 568 IFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLL 627

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           AR G + +A    ++M +    V W A++  C  H
Sbjct: 628 ARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVH 662



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 119/261 (45%), Gaps = 13/261 (4%)

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
             +V+ Y   G  + AL   +R+     V WN +I         + AI +  +M   G +
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARII 386
            D  T   +L     +     G   H ++       +V I NAL+ MY+RCG++ EA +I
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 174

Query: 387 FEEM--KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF-KVLPT-----YITFISVL 438
           F+E+  + + +V+SWN+++        A  AL+LF  M       PT      I+ +++L
Sbjct: 175 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 234

Query: 439 SACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
            AC     V + ++ H  ++ N   ++  + +  +L+D   + G +E+A+ +   M F+ 
Sbjct: 235 PACGSLKAVPQTKEVHGNAIRNGTFLDVFVGN--ALIDAYAKCGLMENAVKVFNMMEFK- 291

Query: 498 DKAVWGALLGACRVHNNVELA 518
           D   W A++       N + A
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAA 312


>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
 gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
          Length = 603

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 178/526 (33%), Positives = 284/526 (53%), Gaps = 58/526 (11%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDV-ANAIEFFDRMPGRDS 122
           N +++ Y++      A+  F+ +P +N  S+N +++  L+  D   +A+  FD MP    
Sbjct: 75  NRLVALYSRLPSSAAAVAAFDDLPHKNAHSYNTLLAALLRRPDTFPDALHLFDTMPAD-- 132

Query: 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
                              AR LV              +YNTL+      GR  EA ++ 
Sbjct: 133 -------------------ARNLV--------------SYNTLMSSLVHHGRQAEALRVV 159

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-------LERDTFS 235
            ++  +   G G    +  +VS     +  A AG + +AR + E         +E     
Sbjct: 160 ARLARDRFLGPGLAMDRFTVVS-----VATACAG-IRAARPLREMHGAVVVSGMELTVIM 213

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
            N M++ Y     +EEA +LF ++   D +TW +M+SGY Q+  L+ AL  F  MP K+ 
Sbjct: 214 ANAMVNAYSKAWRVEEARHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDR 273

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           V+W ++I+G E N + + A++LF +M  EG  P      S+L   + +  +  G ++H  
Sbjct: 274 VAWTALISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKELHCS 333

Query: 356 VTKTVIPDVPIN----NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           + +  I   P N    NAL+ MY++CG +  A  +F  M   ++ +SWN+M+ G + +G 
Sbjct: 334 ILRRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMPE-RDFISWNSMVTGFSHNGL 392

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             ++L +F+ M    V PT++TF++VL+AC+H+GLV  GR   +SM  ++G+EPR EH+A
Sbjct: 393 GKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLILESM-EDHGVEPRAEHYA 451

Query: 472 SLVDIVGRHGRLEDAMDLIKGMP--FEPDKA-VWGALLGACRVHNNVELAQVAAEALMKV 528
           + +D +GR+ +LE+A++ IK +P    P  A  WGALLGACR+H N+ELA+  AE L K+
Sbjct: 452 AFIDALGRNRQLEEAIEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFKL 511

Query: 529 EPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           EP NS  YV+L N+YA  G+WDDA  VR LMK   +KK   YSW++
Sbjct: 512 EPGNSGRYVMLSNIYAAAGQWDDARRVRGLMKEKGLKKDQAYSWIE 557



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 151/311 (48%), Gaps = 42/311 (13%)

Query: 26  VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNS 85
           V+  N M++ Y     +  +EEAR+LFD +  RD VTW ++ISGY +  +++EAL++F+ 
Sbjct: 211 VIMANAMVNAY---SKAWRVEEARHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDM 267

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-SASLSALVSGLIQNGELDEAAR- 143
           MP ++ V+W A+ISG  QNG+   A+E F+RM     S +  ALVS L    +L    R 
Sbjct: 268 MPDKDRVAWTALISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRG 327

Query: 144 VLVKCG--SRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             + C    R  G +   +  +N L+  Y + G +  A  +F ++P            +R
Sbjct: 328 KELHCSILRRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMP------------ER 375

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQML------ERDTF-------SWNTMISGYIHVL 247
           + +SWNSM+  ++  G    +  IFE+ML         TF       S + ++S    +L
Sbjct: 376 DFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLIL 435

Query: 248 DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK----NLVSWNSMIA 303
           +  E   +  +  H     + A +    +   LE A++F K +P +       SW +++ 
Sbjct: 436 ESMEDHGVEPRAEH-----YAAFIDALGRNRQLEEAIEFIKDLPSRIGPGTAGSWGALLG 490

Query: 304 GCETNKDYEGA 314
            C  + + E A
Sbjct: 491 ACRLHGNIELA 501



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 142/303 (46%), Gaps = 38/303 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++ Y K   + +AR LFD++  RD V+W  MISGY   +    L+EA  +FD+MP++D 
Sbjct: 217 MVNAYSKAWRVEEARHLFDQISIRDNVTWTSMISGYCQVKK---LDEALQVFDMMPDKDR 273

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWN-AMIS--------GFLQNGDVANAI 111
           V W  +ISG+ + GE + AL LF  M A  V     A++S        G +  G   +  
Sbjct: 274 VAWTALISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKELHC- 332

Query: 112 EFFDRMPGRDSASL---SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
               R  G D  ++   +ALV    + G++  A  V  +   R     D + ++N+++ G
Sbjct: 333 SILRRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMPER-----DFI-SWNSMVTG 386

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           +   G  +++  +F+++ V        VR     V++ +++   + +G V + R I E M
Sbjct: 387 FSHNGLGKQSLAIFEEMLV------AGVRPTH--VTFLAVLTACSHSGLVSNGRLILESM 438

Query: 229 LERDTFSWNTMISGYIHVL----DMEEASNLFVKMPH---PDTL-TWNAMVSGYAQIGNL 280
            +          + +I  L     +EEA      +P    P T  +W A++      GN+
Sbjct: 439 EDHGVEPRAEHYAAFIDALGRNRQLEEAIEFIKDLPSRIGPGTAGSWGALLGACRLHGNI 498

Query: 281 ELA 283
           ELA
Sbjct: 499 ELA 501


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 179/549 (32%), Positives = 298/549 (54%), Gaps = 38/549 (6%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L  A  +F+ + E + + WNT+  G+A + +   AL+L+  M +  ++  +      L++
Sbjct: 41  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 100

Query: 105 GDVANAIEFFDRMPGR--------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
              + A +   ++ G         D    ++L+S  +QNG L++A +V  +   R     
Sbjct: 101 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHR----- 155

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D+V +Y  LI GY  RG +E A+K+FD+IPV            +++VSWN+MI  YA+ G
Sbjct: 156 DVV-SYTALIKGYASRGYIENAQKMFDEIPV------------KDVVSWNAMISGYAETG 202

Query: 217 DVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWN 268
           +   A E+F+ M++     D  +  T++S       +E    +   +       +    N
Sbjct: 203 NYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVN 262

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           A++  Y++ G LE A   F+ +P K+++SWN++I G      Y+ A+ LF +M   GE P
Sbjct: 263 ALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 322

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKT---VIPDVPINNALITMYARCGAIVEARI 385
           +  T  SIL   + +  + +G  IH  + K    V     +  +LI MYA+CG I  A  
Sbjct: 323 NDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQ 382

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F  + L K++ SWNAMI G A HG A  + ++F  MR   + P  ITF+ +LSAC+H+G
Sbjct: 383 VFNSI-LHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSG 441

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           +++ GR  F+SM  +Y + P++EH+  ++D++G  G  ++A ++I  M  EPD  +W +L
Sbjct: 442 MLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSL 501

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           L AC++H NVEL +  A+ L+K+EPEN   YVLL N+YA  GRW++    R L+    +K
Sbjct: 502 LKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMK 561

Query: 566 KPTGYSWVD 574
           K  G S ++
Sbjct: 562 KVPGCSSIE 570



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 198/403 (49%), Gaps = 35/403 (8%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+     +IS Y+ +   G LE+A  +FD  P RD V++  +I GYA  G +E A ++F+
Sbjct: 125 DLYVHTSLISMYVQN---GRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFD 181

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            +P ++VVSWNAMISG+ + G+   A+E F  M       D +++  +VS   Q+G ++ 
Sbjct: 182 EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIEL 241

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +V         G    ++  N LI  Y + G +E A  LF+ +P             +
Sbjct: 242 GRQVHSWIDDHGFGSN--LKIVNALIDLYSKCGELETACGLFEGLPY------------K 287

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLER-DTFSWNTMIS-----GYIHVLDMEEASN 254
           +++SWN++I  Y        A  +F++ML   +T +  TM+S      ++  +D+    +
Sbjct: 288 DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIH 347

Query: 255 LFVK-----MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           +++      + +  +L   +++  YA+ G++E A   F  +  K+L SWN+MI G   + 
Sbjct: 348 VYIDKRLKGVANASSLR-TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHG 406

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPIN 367
             + +  +F +M+  G +PD  TF  +LS  S    L LG  I + +T+   + P +   
Sbjct: 407 RADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHY 466

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
             +I +    G   EA  +   M++  + V W +++  C  HG
Sbjct: 467 GCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHG 509



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 168/350 (48%), Gaps = 29/350 (8%)

Query: 220 SAREIFEQMLERDTFSWNTMISGYI-------HVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           S R I  QM++    + N  +S  I       H   +  A ++F  +  P+ L WN M  
Sbjct: 5   SLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFR 64

Query: 273 GYAQIGNLELALDFFKRMPQKNLV----SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           G+A   +   AL  +  M    L+    ++  ++  C  +K ++   ++   +   G   
Sbjct: 65  GHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDL 124

Query: 329 DRHTFSSILSM--SSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARII 386
           D +  +S++SM   +G ++       H++  ++   DV    ALI  YA  G I  A+ +
Sbjct: 125 DLYVHTSLISMYVQNGRLE-----DAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKM 179

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+E+  +K+VVSWNAMI G A  G   EALELFK M    V P   T ++V+SACA +G 
Sbjct: 180 FDEIP-VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 238

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +E GRQ   S ++++G    ++   +L+D+  + G LE A  L +G+P++ D   W  L+
Sbjct: 239 IELGRQ-VHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYK-DVISWNTLI 296

Query: 507 GACRVHNNV--ELAQVAAEALMKVEPENSTPYVLLYNMYA-----DVGRW 549
           G    H N+  E   +  E L   E  N    + +    A     D+GRW
Sbjct: 297 GG-YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 345



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 169/397 (42%), Gaps = 71/397 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           +I GY  R  +  A+K+FDE+P +DVVSWN MISGY     +G  +EA  LF      ++
Sbjct: 163 LIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAE---TGNYKEALELFKDMMKTNV 219

Query: 55  MPE--------------------RDCVTW-------------NTVISGYAKTGEMEEALR 81
            P+                    R   +W             N +I  Y+K GE+E A  
Sbjct: 220 RPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACG 279

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGE 137
           LF  +P ++V+SWN +I G+        A+  F  M       +  ++ +++      G 
Sbjct: 280 LFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 339

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           +D    + V    R  G  +      +LI  Y + G +E A ++F+ I            
Sbjct: 340 IDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSI------------ 387

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
             +++ SWN+MI  +A  G   ++ +IF +M    +E D  ++  ++S   H   ++   
Sbjct: 388 LHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR 447

Query: 254 NLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCET 307
           ++F  M       P    +  M+      G  + A +    M  + + V W S++  C+ 
Sbjct: 448 HIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM 507

Query: 308 NKDYEGAIKLFIQ--MQVEGEKPDRHTFSSILSMSSG 342
           + + E   + F Q  +++E E P  +   S +  ++G
Sbjct: 508 HGNVELG-ESFAQNLIKIEPENPGSYVLLSNIYATAG 543


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 193/651 (29%), Positives = 333/651 (51%), Gaps = 98/651 (15%)

Query: 6   VKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNT 65
           V+  ++AKAR+LFDEMP R+  S N+M+SGY+ SR    L  AR LF+ M  R+ V+W  
Sbjct: 57  VRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRN---LFRARELFESMFSRNEVSWTI 113

Query: 66  VISGYAKTGEMEEALRLFNSMPARNV----VSWNAMISGF----------------LQNG 105
           +I GY++  + +EA  L+  M    V    +++  ++SGF                ++ G
Sbjct: 114 MIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFG 173

Query: 106 DVANAIEF-------------------FDRMPGRDSASLSALVSGLIQNGELDEAARVLV 146
             A+ I F                   F  MP +DS S + +++G  + G  +EA ++ +
Sbjct: 174 FSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFM 233

Query: 147 KCGSR---------------CDGGEDLV-----------RAY-------NTLIVGYGQRG 173
           +  +                  G ED++            +Y       N L+  Y +  
Sbjct: 234 QMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHD 293

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----L 229
            ++ A+ LFD++P            + + VS+N +I  YA  G    + ++F+++     
Sbjct: 294 YIDLAKNLFDEMP------------ELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSF 341

Query: 230 ERDTFSWNTMISGYIHVLDM----EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
           +R  F + TM+S     L++    +  +   V     +    NA+V  YA+    E A  
Sbjct: 342 DRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANR 401

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F  +  +N V W ++I+       +E A+K+F +M  E    D+ TF+S L  S+ +  
Sbjct: 402 IFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLAS 461

Query: 346 LHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           + LG Q+H  V +  ++  V   + L+ MYA CG++ +A  +F+EM   +N+V WNA+I 
Sbjct: 462 VSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPD-RNIVCWNALIS 520

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
             + +G A      F  M    + P  ++F+SVL+AC+H GLVE+   +F SM   Y ++
Sbjct: 521 AYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLD 580

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           PR +H+A+++D++ R GR  +A +LI  MPFEPD+ +W ++L +CR+H N +LA+ AA+ 
Sbjct: 581 PRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQ 640

Query: 525 LMKVEP-ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           L K++   ++  YV + N+YA+ G+W++A +V+  M+   +KK T YSWV+
Sbjct: 641 LFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVE 691



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 137/498 (27%), Positives = 238/498 (47%), Gaps = 61/498 (12%)

Query: 63  WNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS 122
           +N  +    +  ++ +A +LF+ MP RN  S N M+SG++++ ++  A E F+ M  R+ 
Sbjct: 49  FNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNE 108

Query: 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGG--EDLVRAYNTLIVGYGQRGRVEEARK 180
            S + ++ G  QN +  EA  +  +    C  G   D +  + TL+ G+     ++E  +
Sbjct: 109 VSWTIMIGGYSQNNQPKEAFNLYTEM---CRSGVKPDHI-TFATLLSGFDDTTTLKEVLQ 164

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +   I            F  +++ +NS++  Y K   +  A ++F +M  +D+ S+N MI
Sbjct: 165 IHSHII--------RFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMI 216

Query: 241 SGYIHVLDMEEASNLFVKMPHPD----------------------------------TLT 266
           +GY      EEA  LF++M + D                                  +  
Sbjct: 217 TGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYV 276

Query: 267 W-----NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           W     NA++  Y++   ++LA + F  MP+ + VS+N +I G   N  YE +  LF ++
Sbjct: 277 WDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRL 336

Query: 322 QVEGEKPDRHT--FSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCG 378
           Q  G   DR    F+++LS+++  ++L +G Q H Q V  T + +V + NAL+ MYA+C 
Sbjct: 337 Q--GTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCE 394

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
              +A  IF  +   +N V W A+I      GF  EAL++FK M    V     TF S L
Sbjct: 395 KFEDANRIFANLA-YRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTL 453

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
            A A+   V  G+Q   S++   G+   +   + LVD+    G ++DA+++ K MP + +
Sbjct: 454 KASANLASVSLGKQLHSSVI-RLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMP-DRN 511

Query: 499 KAVWGALLGACRVHNNVE 516
              W AL+ A   + + E
Sbjct: 512 IVCWNALISAYSQNGDAE 529



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 158/357 (44%), Gaps = 40/357 (11%)

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           +N  +   +    + +A  LF +MP+ +T + N MVSGY +  NL  A + F+ M  +N 
Sbjct: 49  FNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNE 108

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           VSW  MI G   N   + A  L+ +M   G KPD  TF+++LS       L   +QIH  
Sbjct: 109 VSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSH 168

Query: 356 VTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           + +      + + N+L+  Y +   +  A  +F EM   K+ VS+N MI G   +GF  E
Sbjct: 169 IIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMP-TKDSVSFNVMITGYTKYGFREE 227

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASL 473
           AL+LF  MR+    P+  TF ++L     +  V  G+Q H  ++   Y  +  + +  +L
Sbjct: 228 ALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVAN--AL 285

Query: 474 VDIVGRH-------------------------------GRLEDAMDLIK---GMPFEPDK 499
           +D   +H                               G+ E + DL K   G  F+   
Sbjct: 286 LDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKN 345

Query: 500 AVWGALLGACRVHNNVELA-QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
             +  +L    +  N+ +  Q  A+A++            L +MYA   +++DAN +
Sbjct: 346 FPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRI 402


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 189/547 (34%), Positives = 294/547 (53%), Gaps = 34/547 (6%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSM-------PARNVVSWNAM 97
           L+ A+ +FD +P  +  TWNT+I  YA +    ++L +F  M       P +    +   
Sbjct: 85  LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144

Query: 98  ISGFLQNGDVANAIE--FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGG 155
            +  L+      A        + G D   L++L+    + GEL    RV V    R    
Sbjct: 145 AASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRR---- 200

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
            D+V ++N++I  + Q G  EEA +LF ++         NV  K N ++   ++   AK 
Sbjct: 201 -DVV-SWNSMITAFVQGGCPEEALELFQEMETQ------NV--KPNGITMVGVLSACAKK 250

Query: 216 GDVVSAREIFEQMLERD------TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA 269
            D    R +    +ER+      T S N M+  Y     +E+A  LF KMP  D ++W  
Sbjct: 251 SDFEFGRWV-HSYIERNRIGESLTLS-NAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTT 308

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV-EGEKP 328
           M+ GYA+IG  + A   F  MP +++ +WN++I+  E     + A++LF ++Q+ +  KP
Sbjct: 309 MLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKP 368

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIF 387
           D  T  S LS  + +  + LG  IH  + K  +  +  +  +LI MY +CG + +A ++F
Sbjct: 369 DEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVF 428

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
             ++  K+V  W+AMI G A HG   +A+ LF  M+  KV P  +TF ++L AC+H GLV
Sbjct: 429 HSVER-KDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLV 487

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           EEGR  F  M   YG+ P ++H+A +VDI+GR G LE+A++LI+ MP  P  +VWGALLG
Sbjct: 488 EEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLG 547

Query: 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
           AC +H NV LA+ A   L+++EP N   YVLL N+YA  G+WD  + +R LM+   +KK 
Sbjct: 548 ACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKE 607

Query: 568 TGYSWVD 574
            G S ++
Sbjct: 608 PGCSSIE 614



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/479 (26%), Positives = 217/479 (45%), Gaps = 97/479 (20%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISS------------------------------RGSG 43
           A+++FD++P  ++ +WN +I  Y SS                              + + 
Sbjct: 88  AQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAAS 147

Query: 44  FLEE-------ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNA 96
            LEE          +  ++   D    N++I  YAK GE+    R+F ++P R+VVSWN+
Sbjct: 148 ELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNS 207

Query: 97  MISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRC 152
           MI+ F+Q G    A+E F  M  +    +  ++  ++S   +  +  E  R +     R 
Sbjct: 208 MITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDF-EFGRWVHSYIERN 266

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
             GE L  + N ++  Y + G VE+A++LFDK+P            +++IVSW +M++ Y
Sbjct: 267 RIGESLTLS-NAMLDMYTKCGSVEDAKRLFDKMP------------EKDIVSWTTMLVGY 313

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF-----VKMPHPDTLTW 267
           AK G+  +A+ IF+ M  +D  +WN +IS Y      +EA  LF      K   PD +T 
Sbjct: 314 AKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTL 373

Query: 268 NAMVSGYAQIGNLEL-----------------------------------ALDFFKRMPQ 292
            + +S  AQ+G ++L                                   AL  F  + +
Sbjct: 374 VSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVER 433

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ- 351
           K++  W++MIAG   +   + AI LF +MQ +  KP+  TF++IL   S +  +  G   
Sbjct: 434 KDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTF 493

Query: 352 IHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            +QM +   V+P V     ++ +  R G + EA  + E+M +      W A++G C  H
Sbjct: 494 FNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIH 552



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 145/333 (43%), Gaps = 55/333 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD- 59
           +I  Y K  E+    ++F  +P+RDVVSWN MI+ ++     G  EEA  LF  M  ++ 
Sbjct: 177 LIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQ---GGCPEEALELFQEMETQNV 233

Query: 60  -------------CVT--------W-----------------NTVISGYAKTGEMEEALR 81
                        C          W                 N ++  Y K G +E+A R
Sbjct: 234 KPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKR 293

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           LF+ MP +++VSW  M+ G+ + G+   A   FD MP +D A+ +AL+S   Q G+  EA
Sbjct: 294 LFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEA 353

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +  +         D V   +TL     Q G ++    +   I     + +G    K N
Sbjct: 354 LELFHELQLSKTAKPDEVTLVSTL-SACAQLGAMDLGGWIHVYI-----KKQG---MKLN 404

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
                S+I  Y K GD+  A  +F  +  +D F W+ MI+G       ++A  LF KM  
Sbjct: 405 CHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQE 464

Query: 262 ----PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
               P+ +T+  ++   + +G +E    FF +M
Sbjct: 465 DKVKPNAVTFTNILCACSHVGLVEEGRTFFNQM 497



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 138/296 (46%), Gaps = 32/296 (10%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N M+  Y      G +E+A+ LFD MPE+D V+W T++ GYAK GE + A  +F++MP +
Sbjct: 276 NAMLDMYTKC---GSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQ 332

Query: 90  NVVSWNAMISGFLQNGDVANAIEFF-----DRMPGRDSASLSALVSGLIQNGELDEAARV 144
           ++ +WNA+IS + Q G    A+E F      +    D  +L + +S   Q G +D    +
Sbjct: 333 DIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWI 392

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
            V    +  G +       +LI  Y + G +++A  +F  +             ++++  
Sbjct: 393 HVYIKKQ--GMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVE------------RKDVFV 438

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           W++MI   A  G    A  +F +M E     +  ++  ++    HV  +EE    F +M 
Sbjct: 439 WSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQME 498

Query: 261 -----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGCETNKD 310
                 P    +  MV    + G LE A++  ++MP     S W +++  C  +++
Sbjct: 499 LVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHEN 554


>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
          Length = 773

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 197/630 (31%), Positives = 314/630 (49%), Gaps = 77/630 (12%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYL------------- 51
           Y +   +  A K+F+EMP+RDVV+W  +ISG + +  SG  E  RYL             
Sbjct: 160 YARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGESG--EGLRYLVEMVRLAGDGSVR 217

Query: 52  ---------------FDIMPERDCV--------------TWNTVISGYAKTGEMEEALRL 82
                           D +    C+                + + S Y+K    E+A  L
Sbjct: 218 PNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYSTEDACAL 277

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGEL 138
           F  +P ++VVSW ++I  + + G +  A+E F +M       D   +S ++SGL  NG +
Sbjct: 278 FLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNV 337

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
                       R  G  D V   N LI  YG+   V+ A ++F             +  
Sbjct: 338 HGGKTFHAVITKRNFG--DSVLIGNALISMYGKFEMVDSAGRVF------------RLLH 383

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW----NTMISGYIHVLDMEE--- 251
           +R+  SWN M++ Y KAG  V   E++ +M  RD + +    ++++S       + E   
Sbjct: 384 QRDADSWNLMVVGYCKAGCDVKCLELYREMQLRDKYEFWCVADSLVSAISSCSRLAELRL 443

Query: 252 ---ASNLFVK-MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCE 306
              A    +K +   D+   N ++  Y + G  + A   F     K ++V+WN++I+   
Sbjct: 444 GRSAHCYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYA 503

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVP 365
                  A+ L+ QM +EG  P+  T  +++S  + +V L  G +IH  V +     DV 
Sbjct: 504 HLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVS 563

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           IN ALI MYA+CG +  AR IF+ M L  +VV+WN MI G   HG A +ALELF  M   
Sbjct: 564 INTALIDMYAKCGQLGIARRIFDSM-LQHDVVAWNVMISGYGMHGEAKQALELFGKMEGG 622

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            + P  +TF+++LSA  H+GL+EEGR+ F  M  +Y +EP ++H+A +VD++G+ G L++
Sbjct: 623 SIKPNGVTFLAILSALCHSGLLEEGRKVFTRM-GKYSLEPNLKHYACMVDLLGKSGHLQE 681

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A D++  MP EPD  +WG LL AC++H+N E+    A+     +PEN   Y+L+ N Y  
Sbjct: 682 AEDMVLAMPIEPDGGIWGTLLSACKLHDNFEMGLRIAKKAFASDPENEGYYILISNSYGG 741

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
             +WD+  ++R  MK+  ++K  G+S VD+
Sbjct: 742 AKKWDEIEKLRETMKNLGVQKGVGWSAVDY 771



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 111/465 (23%), Positives = 195/465 (41%), Gaps = 73/465 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           + S Y K      A  LF E+P++DVVSW  +I  Y      G + EA  LF  M E   
Sbjct: 261 LFSMYSKCYSTEDACALFLELPEKDVVSWTSLIGIYCR---RGLITEAMELFQQMMESGL 317

Query: 59  -------DCV------------------------------TWNTVISGYAKTGEMEEALR 81
                   CV                                N +IS Y K   ++ A R
Sbjct: 318 QPDEILVSCVLSGLGNNGNVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGR 377

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN-GELDE 140
           +F  +  R+  SWN M+ G+ + G     +E +  M  RD      +   L+        
Sbjct: 378 VFRLLHQRDADSWNLMVVGYCKAGCDVKCLELYREMQLRDKYEFWCVADSLVSAISSCSR 437

Query: 141 AARVLVKCGSRCDGGEDLV----RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            A + +   + C   + L+       N LI  YG+ G+ + A K+F           G  
Sbjct: 438 LAELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIF-----------GLA 486

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA 252
           + K ++V+WN++I  YA  G   +A  +++QM    L  ++ +  T+IS   +++ +E  
Sbjct: 487 KLKGDVVTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACANLVALERG 546

Query: 253 SNLFVKMPHPDTLTWN-------AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
             +     +   + W+       A++  YA+ G L +A   F  M Q ++V+WN MI+G 
Sbjct: 547 EKIH---SYVKEMGWDYDVSINTALIDMYAKCGQLGIARRIFDSMLQHDVVAWNVMISGY 603

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDV 364
             + + + A++LF +M+    KP+  TF +ILS       L  G ++   + K ++ P++
Sbjct: 604 GMHGEAKQALELFGKMEGGSIKPNGVTFLAILSALCHSGLLEEGRKVFTRMGKYSLEPNL 663

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
                ++ +  + G + EA  +   M +  +   W  ++  C  H
Sbjct: 664 KHYACMVDLLGKSGHLQEAEDMVLAMPIEPDGGIWGTLLSACKLH 708



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 125/500 (25%), Positives = 217/500 (43%), Gaps = 52/500 (10%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PG 119
           ++S Y+  G    A   F++ P  +   WN++I       D   A+    RM      P 
Sbjct: 51  LVSAYSSAGRPGLAALAFSASPRPDAFLWNSLIRTHHCASDFVAALSAHRRMLASGARPS 110

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKC--GSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
             +A L+A  S   + G L   A V   C       G  D V   ++L+  Y + G V +
Sbjct: 111 PFTAPLAASASA--ELGALGVGAAVHAYCVRYGLLVGDGDSVAVASSLVYMYARCGNVRD 168

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--LERDTF- 234
           A K+F+++P            +R++V+W ++I    + G+         +M  L  D   
Sbjct: 169 AVKVFEEMP------------ERDVVAWTAVISGCVRNGESGEGLRYLVEMVRLAGDGSV 216

Query: 235 --SWNTMISGY--IHVLDMEEASNLF----VKMPHPDT-LTWNAMVSGYAQIGNLELALD 285
             +  TM SG     VLD   +        VK+   D+ +  +A+ S Y++  + E A  
Sbjct: 217 RPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYSTEDACA 276

Query: 286 FFKRMPQKNLVSWNSMIA-GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
            F  +P+K++VSW S+I   C      E A++LF QM   G +PD    S +LS      
Sbjct: 277 LFLELPEKDVVSWTSLIGIYCRRGLITE-AMELFQQMMESGLQPDEILVSCVLSGLGNNG 335

Query: 345 DLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           ++H G   H ++TK    D V I NALI+MY +   +  A  +F  +   ++  SWN M+
Sbjct: 336 NVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLH-QRDADSWNLMV 394

Query: 404 GGCASHGFATEALELFKSMR---SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
            G    G   + LEL++ M+    ++      + +S +S+C+    +  GR       + 
Sbjct: 395 VGYCKAGCDVKCLELYREMQLRDKYEFWCVADSLVSAISSCSRLAELRLGRS-----AHC 449

Query: 461 YGIEPRIEHFAS----LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG--ACRVHNN 514
           Y I+  ++  +S    L+ + GR G+ + A  +      + D   W  L+   A   H+N
Sbjct: 450 YSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSN 509

Query: 515 VELAQVAAEALMKVEPENST 534
             ++      +  + P ++T
Sbjct: 510 AAMSLYDQMLIEGLTPNSTT 529


>gi|357122034|ref|XP_003562721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Brachypodium distachyon]
          Length = 689

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 203/622 (32%), Positives = 316/622 (50%), Gaps = 79/622 (12%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG- 69
           +A AR++FDE+P+ D  SWN +++ ++S+   G    A  L   M  +  V  NT   G 
Sbjct: 41  LAAARRVFDEIPRPDAASWNSLLTAHVSA---GAHPAAWCLLRAMHAQG-VAANTFALGS 96

Query: 70  ---------------------------------------YAKTGEMEEALRLFNSMPARN 90
                                                  YAK G + +A R+F+ MP RN
Sbjct: 97  SLRSAAAARCPALGAQLQSLAFKSGLADNVFAASALLHMYAKCGRVRDARRVFDGMPERN 156

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE--LDEAARV 144
            VSWNA+I+G++++G V  A+E F  M       D A+ +AL++    +    + +    
Sbjct: 157 TVSWNALIAGYVESGKVLQALELFINMETERLVPDEATFAALLTAFDDSNYFLMHQLHGK 216

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
           +VK GS        +   N  I  Y Q G + E+R++FD+I      G+      R+++S
Sbjct: 217 IVKYGSALG-----LTVSNAAITAYSQCGALAESRRIFDQI------GD-----SRDLIS 260

Query: 205 WNSMIMCYAKAGDVVSAREIFEQML-----ERDTFSWNTMISGYIHVLDMEEAS--NLFV 257
           WN+M+  Y   G    A   F +M+     + D +S+ ++IS      D +  +   L +
Sbjct: 261 WNAMLGAYTYHGMDYDAMGFFVRMIRESGVQLDMYSFTSIISTCPEHDDHQGRAIHGLVI 320

Query: 258 KMP-HPDTLTWNAMVSGYAQI-GN--LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
           K      T   NA+++ Y +I GN  +E A   F  +  K+ VSWNSM+ G   +     
Sbjct: 321 KNGLEGATPVCNALIAMYTRISGNCMMEDACKCFDSLLIKDTVSWNSMLTGYSQHNLSAD 380

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALIT 372
           A++ F  MQ    + D + FS+ L   S +  L LG QIH  ++      +  ++++LI 
Sbjct: 381 ALRFFRCMQSANIRCDEYAFSAALRSCSELAVLQLGRQIHGSIIHSGFASNNFVSSSLIF 440

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY++ G + +A+  FEE     + V WN+MI G A HG A     LF  M   KV   ++
Sbjct: 441 MYSKSGILDDAKKSFEEADK-GSSVPWNSMIFGYAQHGHAHIVHSLFNEMVELKVPLDHV 499

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TF+ ++++C+HAGLV+EG +   +M   YGI  R+EH+A  VD+ GR G+LE A +LI  
Sbjct: 500 TFVGLITSCSHAGLVDEGSEILNAMETRYGIPLRMEHYACGVDLYGRAGQLEKAKELIDS 559

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
           MPFEPD  VW  LLGACR+H N+ELA   A  L+  EP+  + Y+LL +MY+ +G W D 
Sbjct: 560 MPFEPDAMVWMTLLGACRIHGNMELASEVASHLLVSEPKQHSTYILLSSMYSGLGMWSDR 619

Query: 553 NEVRLLMKSNNIKKPTGYSWVD 574
             V+  MK+  + K  G+SW++
Sbjct: 620 AIVQREMKNRGLSKVPGWSWIE 641



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 150/574 (26%), Positives = 265/574 (46%), Gaps = 78/574 (13%)

Query: 6   VKRREMAKARKLFDEMPQRDVVS---WNVMISGY-ISSRGSGFLEEARYLFDIMPERDCV 61
           ++RR    A K    + +  ++S   WN +++ Y +S  G   L  AR +FD +P  D  
Sbjct: 1   MRRRLTIAAAKSHATLLKSCIISPTRWNQLLTAYSLSPLG---LAAARRVFDEIPRPDAA 57

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--G 119
           +WN++++ +   G    A  L  +M A+ V +    +   L++   A       R P  G
Sbjct: 58  SWNSLLTAHVSAGAHPAAWCLLRAMHAQGVAANTFALGSSLRSAAAA-------RCPALG 110

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
               SL A  SGL  N                       V A + L+  Y + GRV +AR
Sbjct: 111 AQLQSL-AFKSGLADN-----------------------VFAASALLHMYAKCGRVRDAR 146

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFS 235
           ++FD +P            +RN VSWN++I  Y ++G V+ A E+F  M    L  D  +
Sbjct: 147 RVFDGMP------------ERNTVSWNALIAGYVESGKVLQALELFINMETERLVPDEAT 194

Query: 236 WNTMISGY--IHVLDMEEASNLFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRM-P 291
           +  +++ +   +   M +     VK      LT  NA ++ Y+Q G L  +   F ++  
Sbjct: 195 FAALLTAFDDSNYFLMHQLHGKIVKYGSALGLTVSNAAITAYSQCGALAESRRIFDQIGD 254

Query: 292 QKNLVSWNSMIAGCETNK-DYEGAIKLFIQMQVE-GEKPDRHTFSSILSMSSGIVDLHLG 349
            ++L+SWN+M+     +  DY+ A+  F++M  E G + D ++F+SI+S      D H G
Sbjct: 255 SRDLISWNAMLGAYTYHGMDYD-AMGFFVRMIRESGVQLDMYSFTSIISTCPEHDD-HQG 312

Query: 350 MQIHQMVTKTVIPD-VPINNALITMYARCGA---IVEARIIFEEMKLLKNVVSWNAMIGG 405
             IH +V K  +    P+ NALI MY R      + +A   F+ + L+K+ VSWN+M+ G
Sbjct: 313 RAIHGLVIKNGLEGATPVCNALIAMYTRISGNCMMEDACKCFDSL-LIKDTVSWNSMLTG 371

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
            + H  + +AL  F+ M+S  +      F + L +C+   +++ GRQ   S+++  G   
Sbjct: 372 YSQHNLSADALRFFRCMQSANIRCDEYAFSAALRSCSELAVLQLGRQIHGSIIHS-GFAS 430

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV---WGALLGACRVHNNVELAQVAA 522
                +SL+ +  + G L+DA    +    E DK     W +++     H +  +     
Sbjct: 431 NNFVSSSLIFMYSKSGILDDAKKSFE----EADKGSSVPWNSMIFGYAQHGHAHIVHSLF 486

Query: 523 EALMKVE-PENSTPYVLLYNMYADVGRWDDANEV 555
             +++++ P +   +V L    +  G  D+ +E+
Sbjct: 487 NEMVELKVPLDHVTFVGLITSCSHAGLVDEGSEI 520



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 122/497 (24%), Positives = 218/497 (43%), Gaps = 83/497 (16%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-DIMPER---DC 60
           Y K   +  AR++FD MP+R+ VSWN +I+GY+    SG + +A  LF ++  ER   D 
Sbjct: 136 YAKCGRVRDARRVFDGMPERNTVSWNALIAGYVE---SGKVLQALELFINMETERLVPDE 192

Query: 61  VTW----------------------------------NTVISGYAKTGEMEEALRLFNSM 86
            T+                                  N  I+ Y++ G + E+ R+F+ +
Sbjct: 193 ATFAALLTAFDDSNYFLMHQLHGKIVKYGSALGLTVSNAAITAYSQCGALAESRRIFDQI 252

Query: 87  -PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELDE 140
             +R+++SWNAM+  +  +G   +A+ FF RM        D  S ++++S   ++   D 
Sbjct: 253 GDSRDLISWNAMLGAYTYHGMDYDAMGFFVRMIRESGVQLDMYSFTSIISTCPEHD--DH 310

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ---RGRVEEARKLFDKIPVNCDRGEGNVR 197
             R +     + +G E      N LI  Y +      +E+A K FD + +          
Sbjct: 311 QGRAIHGLVIK-NGLEGATPVCNALIAMYTRISGNCMMEDACKCFDSLLI---------- 359

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
             ++ VSWNSM+  Y++      A   F  M    +  D ++++  +     +  ++   
Sbjct: 360 --KDTVSWNSMLTGYSQHNLSADALRFFRCMQSANIRCDEYAFSAALRSCSELAVLQLGR 417

Query: 254 NLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            +   + H     +    ++++  Y++ G L+ A   F+   + + V WNSMI G   + 
Sbjct: 418 QIHGSIIHSGFASNNFVSSSLIFMYSKSGILDDAKKSFEEADKGSSVPWNSMIFGYAQHG 477

Query: 310 DYEGAIKLFIQMQVEGEKPDRH-TFSSILSMSS--GIVDLHLGMQI-HQMVTKTVIPDVP 365
                  LF +M VE + P  H TF  +++  S  G+VD   G +I + M T+  IP   
Sbjct: 478 HAHIVHSLFNEM-VELKVPLDHVTFVGLITSCSHAGLVD--EGSEILNAMETRYGIPLRM 534

Query: 366 INNAL-ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-- 422
            + A  + +Y R G + +A+ + + M    + + W  ++G C  HG    A E+   +  
Sbjct: 535 EHYACGVDLYGRAGQLEKAKELIDSMPFEPDAMVWMTLLGACRIHGNMELASEVASHLLV 594

Query: 423 RSFKVLPTYITFISVLS 439
              K   TYI   S+ S
Sbjct: 595 SEPKQHSTYILLSSMYS 611



 Score = 39.3 bits (90), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 12/127 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           +I  Y K   +  A+K F+E  +   V WN MI GY      G       LF+ M E   
Sbjct: 438 LIFMYSKSGILDDAKKSFEEADKGSSVPWNSMIFGYAQ---HGHAHIVHSLFNEMVELKV 494

Query: 58  -RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV-----SWNAMISGFLQNGDVANAI 111
             D VT+  +I+  +  G ++E   + N+M  R  +      +   +  + + G +  A 
Sbjct: 495 PLDHVTFVGLITSCSHAGLVDEGSEILNAMETRYGIPLRMEHYACGVDLYGRAGQLEKAK 554

Query: 112 EFFDRMP 118
           E  D MP
Sbjct: 555 ELIDSMP 561


>gi|357465513|ref|XP_003603041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492089|gb|AES73292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 729

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 191/625 (30%), Positives = 304/625 (48%), Gaps = 74/625 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-------- 52
           +I  Y+K    + AR +FD+M  RDVVSWNV+I GY     +G+L  A  LF        
Sbjct: 97  LIDLYMKLGFTSHARNMFDQMSYRDVVSWNVLICGY---SQNGYLYHAIQLFVDMLRENF 153

Query: 53  --------DIMPERDCVTW-----------------------NTVISGYAKTGEMEEALR 81
                    ++P   C                          N ++S YAK  ++E +  
Sbjct: 154 KPNQTTIVSLLPSCGCFELIFQGRSIHGFGIKAGFGLDSHLNNALMSMYAKCDDLEASQL 213

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           LF+ M  ++VVSWN MI  + QNG    AI +F  M        S  +  L+      E 
Sbjct: 214 LFDEMDEKSVVSWNTMIGVYGQNGLFDKAILYFKEMLKEGFHPSSVTIMNLVSANAFPEN 273

Query: 142 ARV-LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
               +VKCG   D          +L+  Y ++G    A++L+   P             +
Sbjct: 274 VHCYVVKCGFTNDA-----SVVTSLVCLYAKQGFTNTAKQLYKYYPT------------K 316

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           ++++  ++I  Y++ GD+ SA E F Q ++ D       + G +H   +   S+  +   
Sbjct: 317 DLITLTAIISSYSEKGDIESAVECFIQTIQLDIKPDAVALIGVLH--GITNPSHFAIGCT 374

Query: 261 HP----------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
                       D L  N ++S Y++   +E AL  F  M +K L++WNSMI+GC     
Sbjct: 375 FHGYGVKSGLSNDCLVANGLISLYSRFDEIEAALSLFYDMREKPLITWNSMISGCVQAGK 434

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNA 369
              A++LF +M + G+KPD  T +S+LS    + +L +G  +H  + +  V  +  I  A
Sbjct: 435 SSDAMELFSEMSMCGKKPDAITIASLLSGCCQLGNLRIGETLHSYILRNNVRVEDFIGTA 494

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           LI MY++CG +  A  +F  +K    + +WNA+I G + +G    A   +  ++   + P
Sbjct: 495 LIDMYSKCGRLDYAEKVFYNIKD-PCLATWNAIISGYSLYGLEHTAFGCYSKLQEQGLKP 553

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
             ITF+ VL+AC H GLV  G ++F  M  EYG+ P ++H+A +V ++G+ G  ++A++ 
Sbjct: 554 DKITFLGVLAACTHGGLVYLGLEYFNIMTKEYGLMPSLQHYACIVALLGKEGLFKEAIEF 613

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
           I  M  +PD AVWGALL AC +   V+L +  A+ L  +  +N   YVL+ N+YA VGRW
Sbjct: 614 INKMEIQPDSAVWGALLNACCIQREVKLGECLAKKLFLLNHKNGGFYVLMSNLYAIVGRW 673

Query: 550 DDANEVRLLMKSNNIKKPTGYSWVD 574
           DD   VR +MK +     +G S +D
Sbjct: 674 DDVARVREMMKDSGGDGCSGVSVID 698



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 146/324 (45%), Gaps = 46/324 (14%)

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
           +R + N+  ++S+    A +  +V  R+I +  +  + F+++ +I  Y+       +S  
Sbjct: 12  LRSRPNLSLFHSLFQ-NATSPALVIFRQILQANVNPNEFTFSLLIKAYL-------SSPS 63

Query: 256 FVKMPHPDTL-------------------TWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           F   P    L                      +++  Y ++G    A + F +M  +++V
Sbjct: 64  FTHCPSTAALQARQIQTQCLKRGVNQFIHVHTSLIDLYMKLGFTSHARNMFDQMSYRDVV 123

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SWN +I G   N     AI+LF+ M  E  KP++ T  S+L        +  G  IH   
Sbjct: 124 SWNVLICGYSQNGYLYHAIQLFVDMLRENFKPNQTTIVSLLPSCGCFELIFQGRSIHGFG 183

Query: 357 TKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            K     D  +NNAL++MYA+C  +  ++++F+EM   K+VVSWN MIG    +G   +A
Sbjct: 184 IKAGFGLDSHLNNALMSMYAKCDDLEASQLLFDEMD-EKSVVSWNTMIGVYGQNGLFDKA 242

Query: 416 LELFKSMRSFKVLPTYITFISVLSACA-----HAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
           +  FK M      P+ +T ++++SA A     H  +V+ G  +  S+V            
Sbjct: 243 ILYFKEMLKEGFHPSSVTIMNLVSANAFPENVHCYVVKCGFTNDASVV------------ 290

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMP 494
            SLV +  + G    A  L K  P
Sbjct: 291 TSLVCLYAKQGFTNTAKQLYKYYP 314


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 198/635 (31%), Positives = 320/635 (50%), Gaps = 86/635 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           MI+ Y K   M  ARK+FD M   +VVSW  MISGY     +G   +A  ++  M     
Sbjct: 200 MINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGY---SQNGQANDAIIMYIQMTRSGQ 256

Query: 59  --DCVTWNTVISGYAKTGEMEEALRL----FNSMPARNVVSWNAMISGFLQNGDVANAIE 112
             D +T+ +VI      G+++   +L      S    ++ S NA+IS +   G + +A  
Sbjct: 257 FPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASN 316

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
            F R+P +D  S   +++G IQ G   EA  +            DL+R           +
Sbjct: 317 VFTRIPTKDLISWGTMITGYIQLGYRVEALYLF----------RDLLR-----------Q 355

Query: 173 GRVEEARKLFDKIPVNC------DRGEG----NVRF--KRNIVSWNSMIMCYAKAGDVVS 220
           G  +    +F  +   C      + G+      V+F  +RN+ +  S+   YAK G + S
Sbjct: 356 GTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPS 415

Query: 221 AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW--------- 267
           A+  F Q+   D  SWN +I+ +    D  EA + F +M H    PD++T+         
Sbjct: 416 AKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGS 475

Query: 268 --------------------------NAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNS 300
                                     N++++ Y +  +L  AL+ F+ + +  NLVSWN+
Sbjct: 476 PVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNA 535

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT- 359
           +++ C   K      +L+ +M   G KPD  T +++L   + +  L +G Q+H    K+ 
Sbjct: 536 ILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSG 595

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
           +I DV + N LI MYA+CG++  AR +F+  + L ++VSW+++I G A  G   EAL LF
Sbjct: 596 LILDVSVCNGLIDMYAKCGSLKHARDVFDSTQNL-DIVSWSSLIVGYAQCGLGHEALNLF 654

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           + M +  V P  +T++  LSAC+H GLVEEG + +KSM  E+GI P  EHF+ +VD++ R
Sbjct: 655 RIMTNLGVQPNEVTYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLAR 714

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G L +A   I+    + D   W  LL AC+ HNNV++A+  A  ++K++P NS   V+L
Sbjct: 715 AGCLHEAETFIQKSGLDADITAWKTLLAACKTHNNVDIAERGAGNILKLDPSNSAAMVML 774

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N++A  G W++  ++R LMK   ++K  G SW++
Sbjct: 775 CNIHASAGNWEEVAKLRKLMKQMGVQKVPGQSWIE 809



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 183/390 (46%), Gaps = 51/390 (13%)

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
            Y +L++       ++ A+K+ D +  +         ++ +I+  N MI  Y K G +  
Sbjct: 161 TYTSLVLACANFRSLDYAKKIHDHVLKS--------NYQPSIILQNHMINMYGKCGSMKD 212

Query: 221 AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW--------- 267
           AR++F+ M   +  SW +MISGY       +A  ++++M      PD LT+         
Sbjct: 213 ARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYI 272

Query: 268 --------------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
                                     NA++S Y   G +E A + F R+P K+L+SW +M
Sbjct: 273 AGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTM 332

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           I G         A+ LF  +  +G  +P+   F S+ S  S +++L  G Q+H M  K  
Sbjct: 333 ITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFG 392

Query: 361 I-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
           +  +V    +L  MYA+ G +  A++ F ++K   ++VSWNA+I   A +G A EA++ F
Sbjct: 393 LRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIK-NPDIVSWNAIIAAFADNGDANEAIDFF 451

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           + M    + P  IT+IS+L  C     + +GRQ   S + + G +  I    SL+ +  +
Sbjct: 452 RQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQ-IHSYIVKIGFDKEITVCNSLLTMYTK 510

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
              L DA+++ + +    +   W A+L AC
Sbjct: 511 CSHLHDALNVFRDISRNANLVSWNAILSAC 540



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 123/493 (24%), Positives = 215/493 (43%), Gaps = 63/493 (12%)

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARN----VVSWNAMISGFLQNGDVANAIEFFDRM 117
           T+ +++   A    ++ A ++ + +   N    ++  N MI+ + + G + +A + FD M
Sbjct: 161 TYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTM 220

Query: 118 PGRDSASLSALVSGLIQNGELDEA-------------------ARVLVKC--GSRCDGGE 156
              +  S ++++SG  QNG+ ++A                     V+  C      D G 
Sbjct: 221 QLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGR 280

Query: 157 DL------------VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
            L            + + N LI  Y   G++E A  +F +IP             ++++S
Sbjct: 281 QLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPT------------KDLIS 328

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI-----HVLDME---EASNLF 256
           W +MI  Y + G  V A  +F  +L + T+  N  I G +      +L++E   +   + 
Sbjct: 329 WGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMC 388

Query: 257 VKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           VK     +     ++   YA+ G L  A   F ++   ++VSWN++IA    N D   AI
Sbjct: 389 VKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAI 448

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMY 374
             F QM   G  PD  T+ S+L      V L+ G QIH  + K     ++ + N+L+TMY
Sbjct: 449 DFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMY 508

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
            +C  + +A  +F ++    N+VSWNA++  C       E   L+K M      P  IT 
Sbjct: 509 TKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITI 568

Query: 435 ISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
            ++L  CA    +  G Q H  S+  + G+   +     L+D+  + G L+ A D+    
Sbjct: 569 TTLLGTCAELTSLGVGNQVHCYSI--KSGLILDVSVCNGLIDMYAKCGSLKHARDVFDST 626

Query: 494 PFEPDKAVWGALL 506
               D   W +L+
Sbjct: 627 Q-NLDIVSWSSLI 638


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 196/618 (31%), Positives = 311/618 (50%), Gaps = 73/618 (11%)

Query: 11  MAKARKLFDEM-PQRDVVSWNVMISGYI-------------------------------- 37
           M  AR++FDE   +R+ VSWN ++S Y+                                
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 38  SSRGSGFLEEARYLFDIMP----ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS 93
           +  GS  ++  R +  ++     E+D  T N ++  Y K G ++ A  +F  MP  +VVS
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVS 177

Query: 94  WNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LV 146
           WNA+ISG + NG    AIE   +M       +   LS+++      G  D   ++   ++
Sbjct: 178 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMI 237

Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
           K  +  D   D +     L+  Y +   +++A K+FD +              R+++ WN
Sbjct: 238 KANADSD---DYIGV--GLVDMYAKNHFLDDAMKVFDWMS------------HRDLILWN 280

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP---- 262
           ++I   +  G    A  IF  + +       T ++  +      EA++   +  H     
Sbjct: 281 ALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASA-TRQVHALAEK 339

Query: 263 -----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                D    N ++  Y +   L  A+  F+     ++++  SMI         EGAIKL
Sbjct: 340 IGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKL 399

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYAR 376
           F++M  +G +PD    SS+L+  + +     G Q+H  ++ +  + D    NAL+  YA+
Sbjct: 400 FMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAK 459

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG+I +A + F  +   + VVSW+AMIGG A HG    ALELF  M    + P +IT  S
Sbjct: 460 CGSIEDAELAFSSLPE-RGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTS 518

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           VL AC HAGLV+E +++F SM   +GI+   EH++ ++D++GR G+L+DAM+L+  MPF+
Sbjct: 519 VLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQ 578

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
            + +VWGALLGA RVH + EL ++AAE L  +EPE S  +VLL N YA  G W++  +VR
Sbjct: 579 ANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVR 638

Query: 557 LLMKSNNIKKPTGYSWVD 574
            LMK +NIKK    SWV+
Sbjct: 639 KLMKDSNIKKEPAMSWVE 656



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 211/475 (44%), Gaps = 41/475 (8%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPA-RNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           D    N +++ Y   G M++A R+F+   + RN VSWN ++S +++N    +AI+ F  M
Sbjct: 41  DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 100

Query: 118 --PGRDSA--SLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYG 170
              G        S +V+    +  +D   +V   +V+ G   D     V   N L+  Y 
Sbjct: 101 VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKD-----VFTANALVDMYV 155

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
           + GRV+ A  +F+K+P              ++VSWN++I      G    A E+  QM  
Sbjct: 156 KMGRVDIASVIFEKMP------------DSDVVSWNALISGCVLNGHDHRAIELLLQMKS 203

Query: 231 RDTFSWNTMISGYIH------VLDMEEASNLFVKMPHPDTLTW--NAMVSGYAQIGNLEL 282
                   M+S  +         D+    + F+   + D+  +    +V  YA+   L+ 
Sbjct: 204 SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 263

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A+  F  M  ++L+ WN++I+GC     ++ A  +F  ++ EG   +R T +++L  ++ 
Sbjct: 264 AMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTAS 323

Query: 343 IVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +       Q+H +  K   I D  + N LI  Y +C  + +A  +FEE     ++++  +
Sbjct: 324 LEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECS-SGDIIAVTS 382

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI   +       A++LF  M    + P      S+L+ACA     E+G+Q    ++   
Sbjct: 383 MITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ 442

Query: 462 GIEPRIEHFA--SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
            +    + FA  +LV    + G +EDA      +P E     W A++G    H +
Sbjct: 443 FMS---DAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGH 493



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 10/226 (4%)

Query: 343 IVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           + D  LG Q+H M   T    DV + NAL+ MY   G + +AR +F+E    +N VSWN 
Sbjct: 20  VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNG 79

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           ++     +    +A+++F  M    + PT   F  V++AC  +  ++ GRQ   +MV   
Sbjct: 80  LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQ-VHAMVVRM 138

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           G E  +    +LVD+  + GR++ A  + + MP + D   W AL+  C ++ +      A
Sbjct: 139 GYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGH---DHRA 194

Query: 522 AEALMKVEPENSTPYVLLYN----MYADVGRWDDANEVRLLMKSNN 563
            E L++++     P V + +      A  G +D   ++   M   N
Sbjct: 195 IELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKAN 240


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 196/618 (31%), Positives = 311/618 (50%), Gaps = 73/618 (11%)

Query: 11  MAKARKLFDEM-PQRDVVSWNVMISGYI-------------------------------- 37
           M  AR++FDE   +R+ VSWN ++S Y+                                
Sbjct: 151 MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 210

Query: 38  SSRGSGFLEEARYLFDIMP----ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS 93
           +  GS  ++  R +  ++     E+D  T N ++  Y K G ++ A  +F  MP  +VVS
Sbjct: 211 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVS 270

Query: 94  WNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LV 146
           WNA+ISG + NG    AIE   +M       +   LS+++      G  D   ++   ++
Sbjct: 271 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMI 330

Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
           K  +  D   D +     L+  Y +   +++A K+FD +              R+++ WN
Sbjct: 331 KANADSD---DYIGV--GLVDMYAKNHFLDDAMKVFDWMS------------HRDLILWN 373

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP---- 262
           ++I   +  G    A  IF  + +       T ++  +      EA++   +  H     
Sbjct: 374 ALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASA-TRQVHALAEK 432

Query: 263 -----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
                D    N ++  Y +   L  A+  F+     ++++  SMI         EGAIKL
Sbjct: 433 IGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKL 492

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYAR 376
           F++M  +G +PD    SS+L+  + +     G Q+H  ++ +  + D    NAL+  YA+
Sbjct: 493 FMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAK 552

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG+I +A + F  +   + VVSW+AMIGG A HG    ALELF  M    + P +IT  S
Sbjct: 553 CGSIEDAELAFSSLPE-RGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTS 611

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           VL AC HAGLV+E +++F SM   +GI+   EH++ ++D++GR G+L+DAM+L+  MPF+
Sbjct: 612 VLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQ 671

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
            + +VWGALLGA RVH + EL ++AAE L  +EPE S  +VLL N YA  G W++  +VR
Sbjct: 672 ANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVR 731

Query: 557 LLMKSNNIKKPTGYSWVD 574
            LMK +NIKK    SWV+
Sbjct: 732 KLMKDSNIKKEPAMSWVE 749



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 229/505 (45%), Gaps = 29/505 (5%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +IS Y+K      A R+F+ +P    VSW+++++ +  NG   +AI+ F  M   +  
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRA-EGV 99

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
             +     ++     D      V   +   G    V   N L+  YG  G +++AR++FD
Sbjct: 100 CCNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFD 159

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTM 239
           +              +RN VSWN ++  Y K      A ++F +M    ++   F ++ +
Sbjct: 160 EAGS-----------ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCV 208

Query: 240 I---SGYIHVLDMEEASNLFVKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           +   +G  ++    +   + V+M +  D  T NA+V  Y ++G +++A   F++MP  ++
Sbjct: 209 VNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDV 268

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ- 354
           VSWN++I+GC  N     AI+L +QM+  G  P+    SSIL   +G     LG QIH  
Sbjct: 269 VSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGF 328

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           M+      D  I   L+ MYA+   + +A  +F+ M   ++++ WNA+I GC+  G   E
Sbjct: 329 MIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS-HRDLILWNALISGCSHGGRHDE 387

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           A  +F  +R   +     T  +VL + A        RQ   ++  + G          L+
Sbjct: 388 AFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQ-VHALAEKIGFIFDAHVVNGLI 446

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK-VEPENS 533
           D   +   L DA+ + +        AV   +    +  +     ++  E L K +EP+  
Sbjct: 447 DSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPD-- 504

Query: 534 TPYVL--LYNMYADVGRWDDANEVR 556
            P+VL  L N  A +  ++   +V 
Sbjct: 505 -PFVLSSLLNACASLSAYEQGKQVH 528



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 138/301 (45%), Gaps = 13/301 (4%)

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           N ++S Y++      A   F  +P    VSW+S++     N     AI+ F  M+ EG  
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARII 386
            +      +L     + D  LG Q+H M   T    DV + NAL+ MY   G + +AR +
Sbjct: 101 CNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+E    +N VSWN ++     +    +A+++F  M    + PT   F  V++AC  +  
Sbjct: 158 FDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           ++ GRQ   +MV   G E  +    +LVD+  + GR++ A  + + MP + D   W AL+
Sbjct: 218 IDAGRQ-VHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALI 275

Query: 507 GACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN----MYADVGRWDDANEVRLLMKSN 562
             C ++ +      A E L++++     P V + +      A  G +D   ++   M   
Sbjct: 276 SGCVLNGH---DHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKA 332

Query: 563 N 563
           N
Sbjct: 333 N 333



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 8/178 (4%)

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
           T S  L+  +    L  G  +H  + K+      + N LI+ Y++C     AR +F+E+ 
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHANLLKSGFL-ASLRNHLISFYSKCRRPCCARRVFDEIP 64

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
              + VSW++++   +++G    A++ F  MR+  V         VL     A L   G 
Sbjct: 65  DPCH-VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQL---GA 120

Query: 452 Q-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           Q H  +M   +G +  + +  +LV + G  G ++DA  +      E +   W  L+ A
Sbjct: 121 QVHAMAMATGFGSDVFVAN--ALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSA 176


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 187/624 (29%), Positives = 315/624 (50%), Gaps = 65/624 (10%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGY--------------------ISSRGSGF 44
           ++ R ++A AR++FD +P  D  ++N +I  Y                    ++     F
Sbjct: 44  HISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTF 103

Query: 45  ---LEEARYLFDIMPER-------------DCVTWNTVISGYAKTGEMEEALRLFNSMPA 88
              L+    L D+   R             D      +I  Y +      A  +F  MP 
Sbjct: 104 PFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPM 163

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELDEAAR 143
           R+VV+WNAM++G+  +G   +AI     M        ++++L +L+  L Q+G L +   
Sbjct: 164 RDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTS 223

Query: 144 VLVKCGSRC-DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
           +   C   C +  E+ V     L+  Y +  ++  A ++F  +PV            RN 
Sbjct: 224 IHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPV------------RND 271

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQML-ERDTFSWNTMISGYIHVL----DMEEASNLFV 257
           V+W+++I  +     +  A  +F+ ML E   F   T ++  + V     D+   + L  
Sbjct: 272 VTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHA 331

Query: 258 KMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
            +     H D    N+++S YA+ G +  A  FF  +  K+ +S+ ++++GC  N   E 
Sbjct: 332 LIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEE 391

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALIT 372
           A  +F +MQ    +PD  T  S++   S +  L  G   H  ++ + +  +  I N+LI 
Sbjct: 392 AFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLID 451

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MYA+CG I  +R +F++M   ++VVSWN MI G   HG   EA  LF  M++    P  +
Sbjct: 452 MYAKCGKIDLSRQVFDKMPA-RDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDV 510

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TFI +++AC+H+GLV EG+  F +M ++YGI PR+EH+  +VD++ R G L++A   I+ 
Sbjct: 511 TFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQS 570

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
           MP + D  VWGALLGACR+H N++L +  +  + K+ PE +  +VLL N+++  GR+D+A
Sbjct: 571 MPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEA 630

Query: 553 NEVRLLMKSNNIKKPTGYSWVDFS 576
            EVR++ K    KK  GYSW++ +
Sbjct: 631 AEVRIIQKVKGFKKSPGYSWIEIN 654



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 129/535 (24%), Positives = 216/535 (40%), Gaps = 134/535 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS--------------SRGSGFLE 46
           +I  Y++      AR +F +MP RDVV+WN M++GY +                  G   
Sbjct: 141 LIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRP 200

Query: 47  EARYLFDIMP------------------ERDCVTWN--------TVISGYAKTGEMEEAL 80
            A  L  ++P                   R C+  N         ++  YAK  ++  A 
Sbjct: 201 NASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYAC 260

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRDSASLSALVSGLIQNGEL 138
           R+F+ MP RN V+W+A+I GF+    +  A   F  M   G    S +++ S L     L
Sbjct: 261 RVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASL 320

Query: 139 ------DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV----- 187
                  +   ++ K G   D     + A N+L+  Y + G + EA   FD+I V     
Sbjct: 321 ADLHMGTQLHALIAKSGIHAD-----LTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS 375

Query: 188 ----------NCDRGEGNVRFKR--------NIVSWNSMI-------------------- 209
                     N    E  + FK+        +I +  S+I                    
Sbjct: 376 YGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVI 435

Query: 210 ---------MC------YAKAGDVVSAREIFEQMLERDTFSWNTMISGY-IHVLDMEEAS 253
                    +C      YAK G +  +R++F++M  RD  SWNTMI+GY IH L  +EA+
Sbjct: 436 IRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLG-KEAT 494

Query: 254 NLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            LF+ M +    PD +T+  +++  +  G +     +F  M  K  +        C  + 
Sbjct: 495 TLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDL 554

Query: 310 DYEGAI--KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPIN 367
              G +  + +  +Q    K D   + ++L       ++ LG Q+ +++ K + P+   N
Sbjct: 555 LARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQK-LGPEGTGN 613

Query: 368 NALIT-MYARCGAIVEA---RIIFEEMKLLKNV--VSW-------NAMIGGCASH 409
             L++ +++  G   EA   RII +++K  K     SW       +A +GG  SH
Sbjct: 614 FVLLSNIFSAAGRFDEAAEVRII-QKVKGFKKSPGYSWIEINGSLHAFVGGDQSH 667



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 117/254 (46%), Gaps = 16/254 (6%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D   W   +  +   G L LA   F R+P  +  ++N++I        +  AI L+  M 
Sbjct: 33  DKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSML 92

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIV 381
                P+++TF  +L   S +VDL  G  IH       +  D+ ++ ALI +Y RC    
Sbjct: 93  RFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFG 152

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL-PTYITFISVLSA 440
            AR +F +M  +++VV+WNAM+ G A+HG    A+     M+    L P   T +S+L  
Sbjct: 153 PARNVFAKMP-MRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPL 211

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHF-------ASLVDIVGRHGRLEDAMDLIKGM 493
            A  G + +G     + ++ Y +   +E          +L+D+  +  +L  A  +  GM
Sbjct: 212 LAQHGALFQG-----TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGM 266

Query: 494 PFEPDKAVWGALLG 507
           P   D   W AL+G
Sbjct: 267 PVRND-VTWSALIG 279


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 192/636 (30%), Positives = 322/636 (50%), Gaps = 84/636 (13%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS----------------SRGSG----- 43
           Y +   +  A +LFDEMP+RDVV+W  +ISG +                 S G G     
Sbjct: 155 YARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPN 214

Query: 44  --FLEEARYLFDIMPERDCVTW-----------------NTVISGYAKTGEMEEALRLFN 84
              +E       ++ E    T                  +++ S Y K    E+A  LF 
Sbjct: 215 SRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFP 274

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGL-----IQN 135
            +P +++VSW ++I  + + G    A+E F  M       D   +S L++GL     ++ 
Sbjct: 275 ELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRG 334

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           G+   AA V    G       D V   N LI  Y +  +V+ A  +F  +          
Sbjct: 335 GKTFHAAIVRRNFG-------DSVLIGNALISMYAKCKQVDIAATVFRML---------- 377

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML--ERDTFSWNT-------MISGYIHV 246
              +R+  SW+SM++ Y KAG  +   E++ +M   ++D F ++T            +  
Sbjct: 378 --HQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGR 435

Query: 247 LDMEEASNLFV--KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           L + ++++ +    +   ++   NA++S Y + GN ++A   F  +  K++V+W+++I+ 
Sbjct: 436 LRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISS 495

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-D 363
                  + A+ L+ QM  EG KP+  T  S++S  + +  L  G  IH  V    +  D
Sbjct: 496 YSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECD 555

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           + I  AL+ MY +CG +  AR +F+ M L ++VV+WN MI G   HG A +AL+LF  M 
Sbjct: 556 LSICTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGEAIQALKLFSMME 614

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
              V P  +TF+++LSAC HAGLV++GR+ F  M  EY +EP ++H+A +VD++G+ G L
Sbjct: 615 RGNVKPNSLTFLAILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHL 673

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
           ++A D++  MP EPD  +WG LLGAC++H+N E+    A+     +PEN   Y+L+ N Y
Sbjct: 674 QEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSY 733

Query: 544 ADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFSPCG 579
               +W++  ++R +MK++ ++K  G+S +D   CG
Sbjct: 734 GSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDI--CG 767



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 121/533 (22%), Positives = 221/533 (41%), Gaps = 76/533 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           + S Y K      AR LF E+P++D+VSW  +I  Y     +G  E+A  LF  M E   
Sbjct: 256 LFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCR---AGHAEKAVELFLGMEESGL 312

Query: 59  -------------------------------------DCVTWNTVISGYAKTGEMEEALR 81
                                                  +  N +IS YAK  +++ A  
Sbjct: 313 QPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAAT 372

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS-GLIQNGELDE 140
           +F  +  R+  SW++M+  + + G     +E +  M  RD        +  +        
Sbjct: 373 VFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSR 432

Query: 141 AARVLVKCGSRCDGGEDLV----RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
             R+ +   + C   + L        N LI  YG+ G  + ARK+F           G V
Sbjct: 433 LGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIF-----------GMV 481

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEA 252
           + K ++V+W+++I  Y+  G    A  +++QML      ++ +  ++IS   ++  +E  
Sbjct: 482 KTK-DVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHG 540

Query: 253 SNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             +   +       D     A+V  Y + G L +A   F  M ++++V+WN MI+G   +
Sbjct: 541 ELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMH 600

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIH-QMVTKTVIPDVP 365
            +   A+KLF  M+    KP+  TF +ILS    +G+VD   G ++  +M   ++ P++ 
Sbjct: 601 GEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVD--KGRELFTRMEEYSLEPNLK 658

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
               ++ +  + G + EA  +   M +  +   W  ++G C  H      L + K  ++F
Sbjct: 659 HYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAK--KAF 716

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
              P    +  ++S    +       +  + M+  +G+E  I    S +DI G
Sbjct: 717 ASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGW--STIDICG 767



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 169/381 (44%), Gaps = 41/381 (10%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PG 119
           ++S Y+  G    A   F + P  +   WN+++    +  D A+ +    RM      P 
Sbjct: 47  LVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPS 106

Query: 120 RDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           R +A L A  S   + G L   A V    V+ G     G+  V   ++L+  Y + G V 
Sbjct: 107 RFTAPLVA--SAAAELGALPVGAAVHAYSVRFGLL--EGDGSVAVASSLVYMYARCGSVR 162

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI---MCYAKAGDVVS--AREIFEQMLER 231
           +A +LFD++P            +R++V+W ++I   +C  + G+ +S   R +       
Sbjct: 163 DAVRLFDEMP------------ERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGG 210

Query: 232 DTFSWNTMISGYIHVLDMEEAS--------NLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
              +  TM SG      + E S         +   + H  ++  +++ S Y +  + E A
Sbjct: 211 ARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVV-SSLFSMYTKCDSTEDA 269

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F  +P+K+LVSW S+I         E A++LF+ M+  G +PD    S +L+     
Sbjct: 270 RILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGND 329

Query: 344 VDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             +  G   H  + +    D V I NALI+MYA+C  +  A  +F  M   ++  SW++M
Sbjct: 330 AKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVF-RMLHQRDTDSWSSM 388

Query: 403 IGGCASHGFATEALELFKSMR 423
           +      G   + LEL++ M+
Sbjct: 389 VVAYCKAGLDLKCLELYREMQ 409



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 26/289 (8%)

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
           P PD      +VS Y+  G   LA   F   P  +   WNS++       D+   +    
Sbjct: 39  PRPDFAA--KLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASDFASTLSAHR 96

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD----VPINNALITMYA 375
           +M+  G +P R T   + S ++ +  L +G  +H    +  + +    V + ++L+ MYA
Sbjct: 97  RMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYA 156

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE-LFKSMRSF---KVLPTY 431
           RCG++ +A  +F+EM   ++VV+W A+I GC  +G   E L  L + +RS       P  
Sbjct: 157 RCGSVRDAVRLFDEMP-ERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNS 215

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH----FASLVDIVGRHGRLEDAM 487
            T  S L AC   G +  G     + ++ +G++  + H     +SL  +  +    EDA 
Sbjct: 216 RTMESGLEACGVLGELSVG-----TCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDAR 270

Query: 488 DLIKGMPFEPDKAVWGALLGA-CRVHNNVELAQVAAEALMKVEPENSTP 535
            L   +P E D   W +L+GA CR  +    A+ A E  + +E     P
Sbjct: 271 ILFPELP-EKDLVSWTSLIGAYCRAGH----AEKAVELFLGMEESGLQP 314


>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 798

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 191/619 (30%), Positives = 310/619 (50%), Gaps = 64/619 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  +VK  ++A AR LFD MP+R+VVS+  M+   +     G + EA  L++  P    
Sbjct: 157 MVHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMK---RGRVAEAVELYEQCPSGSV 213

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPA-------------------------------- 88
             +   ISG+ +      AL +F  M +                                
Sbjct: 214 AFFTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGS 273

Query: 89  --------RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
                    ++   N++I+ +L+ GD A A + FD M  +D  S +AL+    ++G+LD 
Sbjct: 274 AIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDG 333

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A RVL     R +       ++ TLI  + QRG   EA KL+ ++  +  R         
Sbjct: 334 ARRVLDAMPERNE------VSWGTLIARHEQRGNAAEAVKLYSQMLADGCRP-------- 379

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMISGYIHVLDMEEASNLF 256
           NI  ++S++   A   D+     I  + L+     + F  +++I  Y       +A  +F
Sbjct: 380 NISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIF 439

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
             +P  + + WN++ SGY+  G +  A+  FK+MP +NL SWN++I+G   N+ +  A++
Sbjct: 440 DTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALR 499

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYA 375
            F  M   G+ P   TFSS+L   + +  L  G   H    K  + + + I  AL  MYA
Sbjct: 500 SFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYA 559

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           + G +  ++ +F +M   +N V+W AMI G A +GFA E++ L + M +  + P   TF+
Sbjct: 560 KSGDLQSSKRMFYQMP-ERNDVTWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFL 618

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           ++L AC+H GLVE+   +F+ M   +GI P+ +H+  +VD++ R GRL +A  L+   P 
Sbjct: 619 ALLFACSHGGLVEQAIHYFEKM-QAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPS 677

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           + +   W ALL AC  + N E+ + AA+ L ++  +N+  YVLL NMYA  GRW DA  +
Sbjct: 678 KSEANSWAALLSACNTYKNEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARI 737

Query: 556 RLLMKSNNIKKPTGYSWVD 574
           R+LMK   +KK  G SWV 
Sbjct: 738 RVLMKGTTLKKDGGCSWVQ 756



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 138/516 (26%), Positives = 240/516 (46%), Gaps = 58/516 (11%)

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
           T  + +A+  E + A     +  A +  +++ M+   ++ GD+A+A   FD MP R+  S
Sbjct: 125 TTYAAFARAAECDRAFGDCVAAGAASPFTYDFMVHEHVKAGDIASARGLFDGMPERNVVS 184

Query: 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK 184
            + +V  L++ G + EA  +  +C S        V  +   I G+ +      A  +F K
Sbjct: 185 YTTMVDALMKRGRVAEAVELYEQCPS------GSVAFFTATISGFVRNELHHNALGVFRK 238

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS-----WNTM 239
           + V+C         + N +++  MI     AG+   A  I    ++ + F       N++
Sbjct: 239 M-VSCG-------VRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSL 290

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           I+ Y+ + D   A  +F +M   D ++W A++  Y++ G+L+ A      MP++N VSW 
Sbjct: 291 ITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWG 350

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           ++IA  E   +   A+KL+ QM  +G +P+   FSS+LS  + + DL  G +IH    K 
Sbjct: 351 TLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKM 410

Query: 360 -VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
               +V ++++LI MY +C    +A+ IF+ +   KN+V WN++  G + +G   EA+ L
Sbjct: 411 GSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLP-EKNIVCWNSLASGYSYNGKMVEAMYL 469

Query: 419 FKSM-------------------------RSFKVL------PTYITFISVLSACAH-AGL 446
           FK M                         RSF  +      P  ITF SVL ACA+   L
Sbjct: 470 FKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLCSL 529

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           V     H K++  + G+E  I    +L D+  + G L+ +  +   MP E +   W A++
Sbjct: 530 VTGKMAHAKTI--KLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMP-ERNDVTWTAMI 586

Query: 507 GACRVHNNVELAQVAAEALMK--VEPENSTPYVLLY 540
                +   E + +  E +M   + P   T   LL+
Sbjct: 587 QGLAENGFAEESILLLEDMMATGMTPNEHTFLALLF 622


>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
 gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
          Length = 583

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 180/533 (33%), Positives = 289/533 (54%), Gaps = 38/533 (7%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM- 117
           D +  N +++ YAK  ++ EA ++F+ M  RN+VSW+AMISG+ Q G+  +A+  F ++ 
Sbjct: 37  DVIVSNHILNLYAKCRKLREARQVFDEMSERNLVSWSAMISGYEQIGEPISALGLFSKLN 96

Query: 118 --PGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
             P         S  A + GL+Q  ++   A           G + +    N LI  Y +
Sbjct: 97  IVPNEYVYASVISACASLKGLVQGKQIHGQALKF--------GLDSVSFVSNALITMYMK 148

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G+  +A   +            N   + N V++N++I  + +        E+   M + 
Sbjct: 149 CGKCSDALLAY------------NEALELNPVAYNALITGFVENQQPDKGFEVLRMMYQD 196

Query: 232 ----DTFSWNTMISGYIHVLDMEEASNLF---VKMPHPDT-LTWNAMVSGYAQIGNLELA 283
               D F++  ++       D++    L    +K+    T    N +++ Y+++  LE A
Sbjct: 197 GFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTAFIGNLIITMYSKLNLLEEA 256

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSG 342
              F+ + +K+L+SWN+ I+ C    D+E A++ F +M  E   +PD  TF+S L+  SG
Sbjct: 257 EKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALAACSG 316

Query: 343 IVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  +  G QIH  + +T +  DV   NALI MYA+CG I +A  IF +M+  +N+VSWN 
Sbjct: 317 LASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKAYYIFSKMEH-QNLVSWNT 375

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI G  +HGF  +A ELF  M++  V P  +TF+ +L+A  HAGLV+EG  +F SM   Y
Sbjct: 376 MIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHAGLVDEGLVYFNSMEETY 435

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           GI P IEHF+ L+D++GR GRL +A + +K  PF  D  V G+LL ACR+H +V+  +  
Sbjct: 436 GISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGHDTVVLGSLLSACRLHGDVDTGKCF 495

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A  L+K++P  ++PYVLL N+YA    WD   E   L+K + +KK  G+S ++
Sbjct: 496 ARQLLKLQPATTSPYVLLSNLYASDEMWDGVAEAWKLLKGSGLKKEPGHSLIE 548



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 136/550 (24%), Positives = 241/550 (43%), Gaps = 86/550 (15%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGY------ISSRG--------------SGF 44
           Y K R++ +AR++FDEM +R++VSW+ MISGY      IS+ G              +  
Sbjct: 48  YAKCRKLREARQVFDEMSERNLVSWSAMISGYEQIGEPISALGLFSKLNIVPNEYVYASV 107

Query: 45  LEEARYLFDIMPER-----------DCVTW--NTVISGYAKTGEMEEALRLFNSMPARNV 91
           +     L  ++  +           D V++  N +I+ Y K G+  +AL  +N     N 
Sbjct: 108 ISACASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNP 167

Query: 92  VSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGL-----IQNGELDEAA 142
           V++NA+I+GF++N       E    M       D  +   L+        ++ GEL    
Sbjct: 168 VAYNALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQ 227

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
            + +K  S    G       N +I  Y +   +EEA K F  I             ++++
Sbjct: 228 TIKLKLNSTAFIG-------NLIITMYSKLNLLEEAEKAFRSIE------------EKDL 268

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLER-----DTFSWNTMI---SGYIHVLDMEEASN 254
           +SWN+ I   +   D   A E F++ML       D F++ + +   SG   + + ++   
Sbjct: 269 ISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALAACSGLASMCNGKQIHG 328

Query: 255 LFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
             ++   + D    NA+++ YA+ G +  A   F +M  +NLVSWN+MIAG   +     
Sbjct: 329 HLIRTRLYQDVGAGNALINMYAKCGCIAKAYYIFSKMEHQNLVSWNTMIAGFGNHGFGGK 388

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPDVPINNALI 371
           A +LF +M+  G KPD  TF  +L+ S  +G+VD  L        T  + P++   + LI
Sbjct: 389 AFELFAKMKTMGVKPDSVTFVGLLTASNHAGLVDEGLVYFNSMEETYGISPEIEHFSCLI 448

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            +  R G + EA+   ++     + V   +++  C  HG         + +   K+ P  
Sbjct: 449 DLLGRAGRLNEAKEYMKKFPFGHDTVVLGSLLSACRLHGDVDTGKCFARQL--LKLQPAT 506

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG----------RHG 481
            +   +LS    +  + +G      ++   G++    H  SL+++ G           H 
Sbjct: 507 TSPYVLLSNLYASDEMWDGVAEAWKLLKGSGLKKEPGH--SLIEVNGTFEKFTVVDFSHS 564

Query: 482 RLEDAMDLIK 491
           R+E+ MD++K
Sbjct: 565 RIEEIMDMLK 574



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 180/430 (41%), Gaps = 76/430 (17%)

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK 258
           + +++  N ++  YAK   +  AR++F++M ER+  SW+ MISGY  + +   A  LF K
Sbjct: 35  RSDVIVSNHILNLYAKCRKLREARQVFDEMSERNLVSWSAMISGYEQIGEPISALGLFSK 94

Query: 259 MP---------------------------HPDTLTW---------NAMVSGYAQIGNLEL 282
           +                            H   L +         NA+++ Y + G    
Sbjct: 95  LNIVPNEYVYASVISACASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSD 154

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           AL  +    + N V++N++I G   N+  +   ++   M  +G  PDR TF  +L   + 
Sbjct: 155 ALLAYNEALELNPVAYNALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNS 214

Query: 343 IVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
             DL  G  +H    K  +     I N +ITMY++   + EA   F  ++  K+++SWN 
Sbjct: 215 RDDLKRGELLHCQTIKLKLNSTAFIGNLIITMYSKLNLLEEAEKAFRSIE-EKDLISWNT 273

Query: 402 MIGGCASHGFATEALELFKSM-RSFKVLPTYITFISVLSACAHAGLVEEGRQ---HF--- 454
            I  C+      +ALE FK M    +V P   TF S L+AC+    +  G+Q   H    
Sbjct: 274 FISSCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALAACSGLASMCNGKQIHGHLIRT 333

Query: 455 ---------KSMVNEYG----------IEPRIEH-----FASLVDIVGRHGRLEDAMDL- 489
                     +++N Y           I  ++EH     + +++   G HG    A +L 
Sbjct: 334 RLYQDVGAGNALINMYAKCGCIAKAYYIFSKMEHQNLVSWNTMIAGFGNHGFGGKAFELF 393

Query: 490 --IKGMPFEPDKAVWGALLGACRVHNNVELAQV---AAEALMKVEPENSTPYVLLYNMYA 544
             +K M  +PD   +  LL A      V+   V   + E    + PE    +  L ++  
Sbjct: 394 AKMKTMGVKPDSVTFVGLLTASNHAGLVDEGLVYFNSMEETYGISPE-IEHFSCLIDLLG 452

Query: 545 DVGRWDDANE 554
             GR ++A E
Sbjct: 453 RAGRLNEAKE 462



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 16/160 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +I+ Y K   +AKA  +F +M  +++VSWN MI+G+      GF  +A  LF  M     
Sbjct: 345 LINMYAKCGCIAKAYYIFSKMEHQNLVSWNTMIAGF---GNHGFGGKAFELFAKMKTMGV 401

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
           + D VT+  +++     G ++E L  FNSM     +S     ++ +I    + G +  A 
Sbjct: 402 KPDSVTFVGLLTASNHAGLVDEGLVYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAK 461

Query: 112 EFFDRMP-GRDSASLSALVSGLIQNGELDEA---ARVLVK 147
           E+  + P G D+  L +L+S    +G++D     AR L+K
Sbjct: 462 EYMKKFPFGHDTVVLGSLLSACRLHGDVDTGKCFARQLLK 501


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 190/540 (35%), Positives = 278/540 (51%), Gaps = 55/540 (10%)

Query: 63  WNTVISG------YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           W+ V  G      + K   ++ A ++F  MP R+  +WNAM+SGF Q+G    A   F  
Sbjct: 84  WSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFRE 143

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLV---KCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           M   +    S  V  LIQ+   +++ ++L      G R  G +  V   NT I  YG+ G
Sbjct: 144 MRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRL-GVDVQVTVANTWISTYGKCG 202

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
            ++ A+ +F+ I    DRG+      R +VSWNSM   Y+  G+   A  ++  ML R+ 
Sbjct: 203 DLDSAKLVFEAI----DRGD------RTVVSWNSMFKAYSVFGEAFDAFGLYCLML-REE 251

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW--------------------NAMVSG 273
           F             D+    NL     +P+TLT                     N  +S 
Sbjct: 252 FK-----------PDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISM 300

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           Y++  +   A   F  M  +  VSW  MI+G     D + A+ LF  M   GEKPD  T 
Sbjct: 301 YSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTL 360

Query: 334 SSILSMSSGIVDLHLGMQIHQM--VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
            S++S       L  G  I     +      +V I NALI MY++CG+I EAR IF+   
Sbjct: 361 LSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTP 420

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             K VV+W  MI G A +G   EAL+LF  M      P +ITF++VL ACAH+G +E+G 
Sbjct: 421 -EKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGW 479

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
           ++F  M   Y I P ++H++ +VD++GR G+LE+A++LI+ M  +PD  +WGALL AC++
Sbjct: 480 EYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKI 539

Query: 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           H NV++A+ AAE+L  +EP+ + PYV + N+YA  G WD    +R +MK  NIKK  G S
Sbjct: 540 HRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGES 599



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 192/460 (41%), Gaps = 71/460 (15%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DIMPER 58
           +VK   +  A K+F+ MP+RD  +WN M+SG+     SG  ++A  LF      +I P+ 
Sbjct: 97  FVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQ---SGHTDKAFSLFREMRLNEITPDS 153

Query: 59  DCV---------------------------------TWNTVISGYAKTGEMEEALRLFNS 85
             V                                   NT IS Y K G+++ A  +F +
Sbjct: 154 VTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEA 213

Query: 86  MPA--RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-SASLSALV--SGLIQNGELDE 140
           +    R VVSWN+M   +   G+  +A   +  M   +    LS  +  +   QN E   
Sbjct: 214 IDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLT 273

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             R L+   +   G +  + A NT I  Y +      AR LFD            +   R
Sbjct: 274 QGR-LIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFD------------IMTSR 320

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME-----E 251
             VSW  MI  YA+ GD+  A  +F  M++     D  +  ++ISG      +E     +
Sbjct: 321 TCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWID 380

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           A          + +  NA++  Y++ G++  A D F   P+K +V+W +MIAG   N  +
Sbjct: 381 ARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIF 440

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNA 369
             A+KLF +M     KP+  TF ++L   +    L  G +   ++ +   + P +   + 
Sbjct: 441 LEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSC 500

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           ++ +  R G + EA  +   M    +   W A++  C  H
Sbjct: 501 MVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIH 540



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 153/365 (41%), Gaps = 73/365 (20%)

Query: 2   ISGYVKRREMAKARKLFDEMPQ--RDVVSWNVMISGYISSRGSGF--------------- 44
           IS Y K  ++  A+ +F+ + +  R VVSWN M   Y S  G  F               
Sbjct: 195 ISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAY-SVFGEAFDAFGLYCLMLREEFK 253

Query: 45  ------------------LEEARYL----FDIMPERDCVTWNTVISGYAKTGEMEEALRL 82
                             L + R +      +  ++D    NT IS Y+K+ +   A  L
Sbjct: 254 PDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLL 313

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGEL 138
           F+ M +R  VSW  MISG+ + GD+  A+  F  M       D  +L +L+SG  + G L
Sbjct: 314 FDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSL 373

Query: 139 DEAARVLVKCGSRCD---GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           +    +     +R D      D V   N LI  Y + G + EAR +FD  P         
Sbjct: 374 ETGKWI----DARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTP--------- 420

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD----TFSWNTMISGYIHVLDMEE 251
              ++ +V+W +MI  YA  G  + A ++F +M++ D      ++  ++    H   +E+
Sbjct: 421 ---EKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEK 477

Query: 252 ASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGC 305
               F  M       P    ++ MV    + G LE AL+  + M  K +   W +++  C
Sbjct: 478 GWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNAC 537

Query: 306 ETNKD 310
           + +++
Sbjct: 538 KIHRN 542



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 15/204 (7%)

Query: 1   MISGYVKRREMAKARKLFDEM----PQRDVVSWNVMIS--GYISSRGSGFLEEARYLFDI 54
           MISGY ++ +M +A  LF  M     + D+V+   +IS  G   S  +G   +AR     
Sbjct: 328 MISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYG 387

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
               + +  N +I  Y+K G + EA  +F++ P + VV+W  MI+G+  NG    A++ F
Sbjct: 388 CKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLF 447

Query: 115 DRMPGRD----SASLSALVSGLIQNGELDEAARV--LVKCGSRCDGGEDLVRAYNTLIVG 168
            +M   D      +  A++     +G L++      ++K       G D    Y+ ++  
Sbjct: 448 SKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLD---HYSCMVDL 504

Query: 169 YGQRGRVEEARKLFDKIPVNCDRG 192
            G++G++EEA +L   +    D G
Sbjct: 505 LGRKGKLEEALELIRNMSAKPDAG 528



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 12/134 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K   + +AR +FD  P++ VV+W  MI+GY     +G   EA  LF  M + D 
Sbjct: 399 LIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYAL---NGIFLEALKLFSKMIDLDY 455

Query: 61  ----VTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
               +T+  V+   A +G +E+    F+ M     +S     ++ M+    + G +  A+
Sbjct: 456 KPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEAL 515

Query: 112 EFFDRMPGRDSASL 125
           E    M  +  A +
Sbjct: 516 ELIRNMSAKPDAGI 529


>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
          Length = 596

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 169/482 (35%), Positives = 280/482 (58%), Gaps = 26/482 (5%)

Query: 108 ANAIEFFDRMPGRDSASLSALVSGLIQN-GELDEAARVLVKCGSRCDGGEDLVR---AYN 163
           A ++  FD +P +++ S ++L++ L +  G L +A R+L       DG     R   +YN
Sbjct: 81  AASLAAFDDLPHKNAHSYNSLLAALARGRGTLPDALRLL-------DGMPPASRNVVSYN 133

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
           T+I    + GR  EA ++F ++    DRG G  +   +  +  S     A   D    RE
Sbjct: 134 TVISSLARHGRESEALRVFAQLAR--DRGLGQQQVAIDRFTVVSAASACAGLRDARHLRE 191

Query: 224 IFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279
           +   +    +E      N M+  Y     +E+A  +F +M   D+++W +M++GY +   
Sbjct: 192 LHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASM 251

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           L+ A+  F  MP ++ ++W ++I+G E N + E A++LF +M  EG  P      S L  
Sbjct: 252 LDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGA 311

Query: 340 SSGIVDLHLGMQIHQMVTKTVIPDVPIN----NALITMYARCGAIVEARIIFEEMKLLKN 395
            + +  +  G ++H  + +  I   P N    NALI MY++CG +V A  +F+ M L ++
Sbjct: 312 CAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRM-LERD 370

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           ++SWN+M+ G + +G   ++L +F+ M   +V PTY+TF++VL+AC+HAGLV +GR+  +
Sbjct: 371 IISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILE 430

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGACRVH 512
           SM  ++G+EPR EH+A+ +D +GR+ +LE+A + IKG+  +        WGALLGAC VH
Sbjct: 431 SM-QDHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVH 489

Query: 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
            N+E+A+  AEAL ++EPENS  YV+L N+Y+  G+WDDA +VR LMK   ++K   YSW
Sbjct: 490 GNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVRALMKGKGLRKDQAYSW 549

Query: 573 VD 574
           ++
Sbjct: 550 IE 551



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 161/335 (48%), Gaps = 33/335 (9%)

Query: 26  VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNS 85
           V+  N M+  Y  +   G +E+AR +FD M  RD V+W ++I+GY +   +++A+++F+ 
Sbjct: 205 VIMANAMVDAYSKA---GRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDM 261

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS-ALVSGLIQNGELDEAARV 144
           MPA++ ++W A+ISG  QNG+   A+E F+RM G        ALVS L    ++   AR 
Sbjct: 262 MPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARG 321

Query: 145 LVKCG---SRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
               G    R  G +   V  +N LI  Y + G +  A  +FD++             +R
Sbjct: 322 KEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRM------------LER 369

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEEASNLF 256
           +I+SWNSM+  ++  G    +  +FE+ML+ +      ++  +++   H   + +   + 
Sbjct: 370 DIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRIL 429

Query: 257 VKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK----NLVSWNSMIAGCETN 308
             M      P    + A +    +   LE A +F K +  K       SW +++  C  +
Sbjct: 430 ESMQDHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVH 489

Query: 309 KDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMSSG 342
            + E A ++   + Q+E E   R+   S +  ++G
Sbjct: 490 GNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAG 524



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 36/302 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  Y K   +  AR +FD+M  RD VSW  MI+GY     +  L++A  +FD+MP +D 
Sbjct: 211 MVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCR---ASMLDDAVQVFDMMPAQDA 267

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVV----SWNAMISGFLQNGDVANAIE---- 112
           + W  +ISG+ + GE E AL LF  M    VV    +  + +    + G VA   E    
Sbjct: 268 IAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGF 327

Query: 113 FFDRMPGRDSASL---SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
              R  G D  ++   +AL+    + G++  A  V  +   R     D++ ++N+++ G+
Sbjct: 328 ILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLER-----DII-SWNSMVTGF 381

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
              G+ +++  +F+++  +          +   V++ +++   + AG V   R I E M 
Sbjct: 382 SHNGQGKQSLAVFERMLKD--------EVQPTYVTFLAVLTACSHAGLVSDGRRILESMQ 433

Query: 230 ERDTFSWNTMISGYIHVL----DMEEAS----NLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           +          + +I  L     +EEAS     L  K+    T +W A++      GN+E
Sbjct: 434 DHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIE 493

Query: 282 LA 283
           +A
Sbjct: 494 IA 495


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 195/645 (30%), Positives = 317/645 (49%), Gaps = 84/645 (13%)

Query: 6   VKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNT 65
           ++R +++ A K++DEMP ++ VS N MISGY+     G L  AR+LFD MP+R  VTW  
Sbjct: 55  LRRGQVSAALKVYDEMPHKNTVSTNTMISGYVK---MGDLSSARHLFDAMPDRTVVTWTI 111

Query: 66  VISGYAKTGEMEEALRLFNSM----PARNVVSWNAMISG----FLQNGDVANAIEFFDRM 117
           ++  YA     +EA +LF  M       + V++  ++ G      QN      +  F   
Sbjct: 112 LMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDAVPQNA--VGQVHAFAVK 169

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
            G D+     + + L+++    E  R+ + C    +  +     +NTLI GY + G   E
Sbjct: 170 LGFDTNLFLTVCNVLLKS--YCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTE 227

Query: 178 ARKLFDKIPVNCDRGEG---------------------------NVRFKRNIVSWNSMIM 210
           A  LF K+  +  +                                 F R+    N ++ 
Sbjct: 228 AIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILH 287

Query: 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----------P 260
            Y+K   V+  R +F +M E D  S+N +IS Y      EE+ NLF +M          P
Sbjct: 288 FYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFP 347

Query: 261 HPDTLT-----------------------------WNAMVSGYAQIGNLELALDFFKRMP 291
               L+                              N++V  YA+    + A   FK + 
Sbjct: 348 FATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLS 407

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           Q++ VSW ++I+G      +   +KLF +M+    + D+ TF+++L  S+G   L LG Q
Sbjct: 408 QRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQ 467

Query: 352 IHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +H  + ++  + +V   + L+ MYA+CG+I +A  +FEEM   +N VSWNA+I   A +G
Sbjct: 468 LHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALISAYADNG 526

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
               A+  F  M    + P  ++ + VL AC+H G VE+G + F++M   YGI P+ +H+
Sbjct: 527 DGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHY 586

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
           A ++D++GR+GR  +A  L+  MPFEPD+ +W ++L ACR++ N  LA+ AAE L  +E 
Sbjct: 587 ACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEK 646

Query: 531 -ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             ++  YV + N+YA  G+W++   V+  M+   IKK   YSWV+
Sbjct: 647 LRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVE 691



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 138/552 (25%), Positives = 246/552 (44%), Gaps = 89/552 (16%)

Query: 6   VKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNT 65
           V+ R +A  R+L    P    V   ++ +G+                      D    N 
Sbjct: 10  VRSRTLATLRQLRQPPPATRRVDARIIKTGF--------------------NTDTCRSNF 49

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
            +    + G++  AL++++ MP +N VS N MISG+++ GD+++A   FD MP R   + 
Sbjct: 50  TVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTW 109

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           + L+     N   DEA ++  +    C   + +   + TL+ G              D +
Sbjct: 110 TILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVT--FTTLLPGCN------------DAV 155

Query: 186 PVNCDRGEGNVR-------FKRN--IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           P N     G V        F  N  +   N ++  Y +   +  A  +FE++L++D+ ++
Sbjct: 156 PQN---AVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTF 212

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH----PDTLTWN---------------------AMV 271
           NT+I+GY       EA +LF+KM      P   T++                     ++ 
Sbjct: 213 NTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVT 272

Query: 272 SGY---AQIGNLELAL-----------DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           +G+   A +GN  L             + F  MP+ + VS+N +I+     + YE ++ L
Sbjct: 273 TGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNL 332

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYAR 376
           F +MQ  G       F+++LS+++ +  L +G Q+H Q +  T    + + N+L+ MYA+
Sbjct: 333 FREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAK 392

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           C    EA +IF+ +   ++ VSW A+I G    G     L+LF  MR   +     TF +
Sbjct: 393 CEMFDEAELIFKSLS-QRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFAT 451

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           VL A A    +  G+Q    ++    +E  +   + LVD+  + G ++DA+ + + MP +
Sbjct: 452 VLKASAGFASLLLGKQLHAFIIRSGNLE-NVFSGSGLVDMYAKCGSIKDAVQVFEEMP-D 509

Query: 497 PDKAVWGALLGA 508
            +   W AL+ A
Sbjct: 510 RNAVSWNALISA 521



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 125/323 (38%), Gaps = 71/323 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSGFLEE 47
           ++  Y K     +A  +F  + QR  VSW  +ISGY+               RG+    +
Sbjct: 386 LVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRAD 445

Query: 48  ARYLFDIMPE-----------------------RDCVTWNTVISGYAKTGEMEEALRLFN 84
                 ++                          +  + + ++  YAK G +++A+++F 
Sbjct: 446 QSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFE 505

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            MP RN VSWNA+IS +  NGD   AI  F +M       DS S+  ++      G +++
Sbjct: 506 EMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQ 565

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP-----------VNC 189
                 +  S   G     + Y  ++   G+ GR  EA KL D++P           +N 
Sbjct: 566 GTE-FFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNA 624

Query: 190 DRGEGNVRFK-------------RNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----- 231
            R   N                 R+  ++ SM   YA AG   + R + + M ER     
Sbjct: 625 CRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGIKKV 684

Query: 232 DTFSWNTMISGYIHVLDMEEASN 254
             +SW   ++  IHV    + ++
Sbjct: 685 PAYSW-VEVNHKIHVFSSNDQTH 706


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 174/563 (30%), Positives = 289/563 (51%), Gaps = 70/563 (12%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA-- 123
           +IS Y+K+G + +A  +F  +P +N+ SWNA++  +  +    + ++ F  +   +S   
Sbjct: 44  LISFYSKSGSIRDAYNVFGKIPRKNIFSWNALLISYTLHNMHTDLLKLFSSLVNSNSTDV 103

Query: 124 ---------SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
                    +L AL S    +G   E    +++ G   D     +   N LI  Y +   
Sbjct: 104 KPDRFTVTCALKALASLFSNSGLAKEVHSFILRRGLEYD-----IFVVNALITFYSRCDE 158

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----- 229
           +  AR +FD++P            +R+IVSWN+M+  Y++ G     +E+F  ML     
Sbjct: 159 LVLARIMFDRMP------------ERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEV 206

Query: 230 -----------------------------------ERDTFSWNTMISGYIHVLDMEEASN 254
                                              + D   WN +I  Y     ++ A  
Sbjct: 207 KPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARE 266

Query: 255 LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
           LF +M   D +T+ +M+SGY   G +  A+D F+   +  L +WN++I+G   N   EGA
Sbjct: 267 LFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGA 326

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITM 373
           + +F  MQ  G +P+  T +SIL + S    L  G +IH   +  T   ++ +  A+I  
Sbjct: 327 VDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDS 386

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           YA+CG +  A+++F+++K  +++++W ++I   A HG A  AL LF  M +  + P  +T
Sbjct: 387 YAKCGYLHGAQLVFDQIKG-RSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVT 445

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           F SVL+ACAH+G ++E  + F  ++ EYGI+P +EH+A +V ++ R G+L DA++ I  M
Sbjct: 446 FTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKM 505

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           P EP   VWGALL    V  +VEL +   + L ++EPEN+  YV++ N+Y+  GRW DA+
Sbjct: 506 PLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDAD 565

Query: 554 EVRLLMKSNNIKKPTGYSWVDFS 576
            +R LMK   +KK  G SW++ S
Sbjct: 566 TIRDLMKEVRLKKIPGNSWIETS 588



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 142/263 (53%), Gaps = 9/263 (3%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF--- 318
           PD    + ++S Y++ G++  A + F ++P+KN+ SWN+++     +  +   +KLF   
Sbjct: 36  PDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALLISYTLHNMHTDLLKLFSSL 95

Query: 319 IQMQVEGEKPDRHTFSSIL-SMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYAR 376
           +       KPDR T +  L +++S   +  L  ++H  + +  +  D+ + NALIT Y+R
Sbjct: 96  VNSNSTDVKPDRFTVTCALKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSR 155

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-RSFKVLPTYITFI 435
           C  +V ARI+F+ M   +++VSWNAM+ G +  G   +  ELF+ M  S +V P  +T +
Sbjct: 156 CDELVLARIMFDRMP-ERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAV 214

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           SVL ACA +  +  G +  +  VNE  I+  +  + +++ +  + G L+ A +L + M  
Sbjct: 215 SVLQACAQSNDLIFGIEVHR-FVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEM-L 272

Query: 496 EPDKAVWGALLGACRVHNNVELA 518
           E D   + +++    VH  V  A
Sbjct: 273 EKDAITYCSMISGYMVHGFVNQA 295



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/426 (23%), Positives = 184/426 (43%), Gaps = 99/426 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           +I+ Y +  E+  AR +FD MP+RD+VSWN M++GY  S+G  + E+ + LF +M     
Sbjct: 149 LITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGY--SQGGSY-EKCKELFRVMLSSLE 205

Query: 56  -----------------------------------PERDCVTWNTVISGYAKTGEMEEAL 80
                                               + D   WN VI  YAK G ++ A 
Sbjct: 206 VKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYAR 265

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
            LF  M  ++ +++ +MISG++ +G V  A++ F         + +A++SGL+QN   + 
Sbjct: 266 ELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEG 325

Query: 141 AA---RVLVKCGSRCD------------------GGEDL------------VRAYNTLIV 167
           A    R +   G R +                  GG+++            +     +I 
Sbjct: 326 AVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIID 385

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y + G +  A+ +FD+I              R++++W S+I  YA  GD   A  +F +
Sbjct: 386 SYAKCGYLHGAQLVFDQIK------------GRSLIAWTSIISAYAVHGDANVALSLFYE 433

Query: 228 ML----ERDTFSWNTMISGYIHVLDMEEASNLF-VKMP----HPDTLTWNAMVSGYAQIG 278
           ML    + D  ++ ++++   H  +++EA  +F V +P     P    +  MV   ++ G
Sbjct: 434 MLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAG 493

Query: 279 NLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSI 336
            L  A++F  +MP +     W +++ G     D E    +F ++ ++E E    +   + 
Sbjct: 494 KLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMAN 553

Query: 337 LSMSSG 342
           L   SG
Sbjct: 554 LYSQSG 559


>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 745

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 195/638 (30%), Positives = 313/638 (49%), Gaps = 86/638 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------------RG 41
           MIS Y K   +  AR +FDEMP R++VSW  M+S   +S                   + 
Sbjct: 44  MISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIEQP 103

Query: 42  SGFLEEA------------------RYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
           + FL  A                   ++F    + D V  N ++  Y K G + +A R+F
Sbjct: 104 NQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVF 163

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG------- 136
             +P +N  SWN +I G+ + G + +A++ FD+MP  D  S +++++GL+ N        
Sbjct: 164 CEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNASSRALRF 223

Query: 137 ---------ELDEAA--RVLVKCGS----------RC----DGGEDLVRAYNTLIVGYGQ 171
                    ++DE     VL  CG            C     G E      + LI  Y  
Sbjct: 224 VSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSS 283

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--- 228
              + EA K+FD+   N    E       ++  WNSM+  +   GD V A  +   M   
Sbjct: 284 CKLLSEATKIFDQYFRNSSVSE-------SLALWNSMLSGHVVNGDYVEALSMISHMHRS 336

Query: 229 -LERDTFSWNTMISGYIHVLDMEEASNL--FVKMP--HPDTLTWNAMVSGYAQIGNLELA 283
            +  D ++++ ++   ++  ++  AS +  FV       D +  + ++  YA+ G++  A
Sbjct: 337 GVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNA 396

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
           L  F+R+P K++V+W+S+I GC      + A  LF+ M   G + D    S +L   S +
Sbjct: 397 LRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSSL 456

Query: 344 VDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
                G Q+H + + K    +  +  ALI MYA+CG I +A  +F  +  + + +SW ++
Sbjct: 457 ASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCLSEI-DTMSWTSI 515

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I GCA +G A EA+ L   M      P  IT + VL+AC H+GLVEE    F S+   +G
Sbjct: 516 IVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTACRHSGLVEEAWDVFNSIETNHG 575

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           + P  EH+  +VDI+G+ GR E+A+ LI  MPF+PDK +W +LLGAC  + N +LA + A
Sbjct: 576 LIPCPEHYNCMVDILGQAGRFEEAVKLISEMPFKPDKTIWSSLLGACGTYKNRDLANIVA 635

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
           E L+   PE+ + Y++L N+YA +G WD  ++VR  +K
Sbjct: 636 EHLLATSPEDVSVYIMLSNVYAALGMWDSVSKVRETVK 673



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 138/505 (27%), Positives = 228/505 (45%), Gaps = 68/505 (13%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------ 117
           N +IS Y+K   + +A  +F+ MP RN+VSW  M+S    +     A+  ++ M      
Sbjct: 42  NNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIE 101

Query: 118 -PGRDSASLSALVSGLIQNGELDEAAR--------------------VLVKCGSRCDGGE 156
            P +   S      GL++N EL +                       + VKCGS  D   
Sbjct: 102 QPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQR 161

Query: 157 DLVR-------AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
                      ++NTLI+GY ++G +++A KLFDK+P            + +IVSWNS+I
Sbjct: 162 VFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMP------------EPDIVSWNSII 209

Query: 210 MCYAKAGDVVSAREI-FEQM-----LERDTFSWNTMI--SGYIHVLDMEEASNLFVKMPH 261
              A   D  S+R + F  M     L+ D F++ +++   G    L +    + ++    
Sbjct: 210 ---AGLVDNASSRALRFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIKSG 266

Query: 262 PDTLTW--NAMVSGYAQIGNLELALDFFKRMPQKNLVS-----WNSMIAGCETNKDYEGA 314
            ++  +  +A++  Y+    L  A   F +  + + VS     WNSM++G   N DY  A
Sbjct: 267 FESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEA 326

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-TKTVIPDVPINNALITM 373
           + +   M   G + D +TFS +L +     +L L  Q+H  V T     D  + + LI +
Sbjct: 327 LSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDI 386

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           YA+ G+I  A  +FE +   K+VV+W+++I GCA  G    A  LF  M    +   +  
Sbjct: 387 YAKQGSINNALRLFERLP-DKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQIDHFV 445

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
              VL AC+     + G+Q   S+  + G E       +L+D+  + G +EDA+ L  G 
Sbjct: 446 ISIVLKACSSLASHQHGKQ-VHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLF-GC 503

Query: 494 PFEPDKAVWGALLGACRVHNNVELA 518
             E D   W +++  C  +   E A
Sbjct: 504 LSEIDTMSWTSIIVGCAQNGRAEEA 528



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 154/387 (39%), Gaps = 77/387 (19%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF- 256
           F  +I   N+MI  Y+K   ++ AR +F++M  R+  SW TM+S   +     EA +L+ 
Sbjct: 34  FCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSVLTNSSMPHEALSLYN 93

Query: 257 ----VKMPHP-----------------------------------DTLTWNAMVSGYAQI 277
                K+  P                                   D +  NA++  Y + 
Sbjct: 94  EMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKC 153

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ----------------- 320
           G+L  A   F  +P KN  SWN++I G       + A+KLF +                 
Sbjct: 154 GSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLV 213

Query: 321 -------------MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPI 366
                        M  +G K D  TF S+L       +L LG +IH  + K+        
Sbjct: 214 DNASSRALRFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYC 273

Query: 367 NNALITMYARCGAIVEARIIFEEM----KLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
            +ALI MY+ C  + EA  IF++      + +++  WN+M+ G   +G   EAL +   M
Sbjct: 274 ISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHM 333

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
               V   + TF  VL  C +   +    Q     V   G E      + L+DI  + G 
Sbjct: 334 HRSGVRFDFYTFSIVLKICMNFDNLSLASQ-VHGFVITSGYELDCVVGSILIDIYAKQGS 392

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGAC 509
           + +A+ L + +P + D   W +L+  C
Sbjct: 393 INNALRLFERLP-DKDVVAWSSLITGC 418



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 146/366 (39%), Gaps = 71/366 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY--ISSRGSGF----------LEEA 48
           +I  Y K+  +  A +LF+ +P +DVV+W+ +I+G     S    F          L+  
Sbjct: 383 LIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQID 442

Query: 49  RYLFDIMP------------------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
            ++  I+                         E + V    +I  YAK G++E+AL LF 
Sbjct: 443 HFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFG 502

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDE 140
            +   + +SW ++I G  QNG    AI    +M       +  ++  +++    +G ++E
Sbjct: 503 CLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTACRHSGLVEE 562

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A  V     +   G       YN ++   GQ GR EEA KL  ++P           FK 
Sbjct: 563 AWDVFNSIETN-HGLIPCPEHYNCMVDILGQAGRFEEAVKLISEMP-----------FKP 610

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLER--DTFSWNTMISGYIHVLDM--------- 249
           +   W+S++       +   A  + E +L    +  S   M+S     L M         
Sbjct: 611 DKTIWSSLLGACGTYKNRDLANIVAEHLLATSPEDVSVYIMLSNVYAALGMWDSVSKVRE 670

Query: 250 -------EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
                  + A  +F ++P       +  + G+A+ G     +     + + +LVSWN++I
Sbjct: 671 TVKKIGKKRAGKIFYEIPFKFYFMEHLHL-GHAKQGLNGGVVKVIYPILEPDLVSWNNVI 729

Query: 303 AGCETN 308
           AG   N
Sbjct: 730 AGLADN 735


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 200/659 (30%), Positives = 319/659 (48%), Gaps = 103/659 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMP--QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           +IS Y K   +  AR +F+ M   QR+VVSWN MI+ Y  +   G   EA  L+  M  +
Sbjct: 48  LISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQN---GHSTEALVLYWRMNLQ 104

Query: 59  ----DCVTW--------------------------------NTVISGYAKTGEMEEALRL 82
               D VT+                                N +++ YA+ G + +A R+
Sbjct: 105 GLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRM 164

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---DSASLSALVSGLIQNGELD 139
           F S+  R+  SWNA+I    Q+GD + A+  F  M      +S +   ++SG      L 
Sbjct: 165 FQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLP 224

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           E  ++  +  +      DLV A   LI  YG+ G   EAR++FDK+             K
Sbjct: 225 EGRKIHAEIVAN-GFDSDLVVA-TALINMYGKCGSSHEAREVFDKMK------------K 270

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM------------------------------- 228
           R++VSWN MI CY + GD   A E+++++                               
Sbjct: 271 RDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLV 330

Query: 229 --------LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG-- 278
                   L+ +      +++ Y     +EEA  +F  M + D + W+ ++  YA  G  
Sbjct: 331 HSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYG 390

Query: 279 -NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ-VEGEKPDRHTFSSI 336
            +   A   F R+  ++ + WN+MI     N     A+K+F +M    G KPD  TF ++
Sbjct: 391 KDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAV 450

Query: 337 LSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           L   + +  L     +H  ++++ +  +V + N LI MYARCG++ EA  +F   K  K 
Sbjct: 451 LEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKE-KT 509

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           VVSW AM+   + +G   EAL+LF+ M    V P  +T+ S+L  C H G +E+G ++F 
Sbjct: 510 VVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFT 569

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
            M   +G+ P  +HFA++VD++GR GRL DA +L++ MPFEPD   W   L ACR+H  +
Sbjct: 570 DMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKL 629

Query: 516 ELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           EL + AAE + +++P ++ PY+ + N+YA  G W+    VR  M+   +KK  G S+++
Sbjct: 630 ELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIE 688



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 138/504 (27%), Positives = 242/504 (48%), Gaps = 75/504 (14%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMP--ARNVVSWNAMISGFLQNGDVANAIEFF 114
           ERD +  N +IS Y K   + +A  +F SM    RNVVSWNAMI+ + QNG    A+  +
Sbjct: 39  ERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLY 98

Query: 115 DRMP----GRDSASLSALV---SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV 167
            RM     G D  +  +++   S L Q  E+    RV         G +      N L+ 
Sbjct: 99  WRMNLQGLGTDHVTFVSVLGACSSLAQGREIHN--RVFYS------GLDSFQSLANALVT 150

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y + G V +A+++F  +              R+  SWN++I+ ++++GD   A  IF++
Sbjct: 151 MYARFGSVGDAKRMFQSLQT------------RDETSWNAVILAHSQSGDWSGALRIFKE 198

Query: 228 M---LERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNL 280
           M   ++ ++ ++  +ISG+     + E   +  ++       D +   A+++ Y + G+ 
Sbjct: 199 MKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSS 258

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
             A + F +M ++++VSWN MI     N D+  A++L+ ++ +EG K  + TF SIL   
Sbjct: 259 HEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGAC 318

Query: 341 SGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           S +  L  G  +H  ++ + +  +V +  AL+ MYA+CG++ EAR +F  MK  ++ V+W
Sbjct: 319 SSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK-NRDAVAW 377

Query: 400 NAMIGGCASHGF----------------------------------ATEALELFKSMRSF 425
           + +IG  AS+G+                                  A  A+++F+ M   
Sbjct: 378 STLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGA 437

Query: 426 KVL-PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
             L P  +TFI+VL ACA  G + E +    + ++E  +E  +    +L+++  R G LE
Sbjct: 438 AGLKPDAVTFIAVLEACASLGRLSEVKA-LHAQISESELESNVVVTNTLINMYARCGSLE 496

Query: 485 DAMDLIKGMPFEPDKAVWGALLGA 508
           +A  L      E     W A++ A
Sbjct: 497 EAERLFAAAK-EKTVVSWTAMVAA 519



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 187/384 (48%), Gaps = 51/384 (13%)

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
           T++      G V E R L ++I  +        RF+R+ +  N++I  Y K   +V AR 
Sbjct: 12  TVLCSCSSCGDVAEGRALHERIRCS--------RFERDTMVGNALISMYGKCDSLVDARS 63

Query: 224 IFEQM--LERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTW---------- 267
           +FE M   +R+  SWN MI+ Y       EA  L+ +M       D +T+          
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 268 ----------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
                                 NA+V+ YA+ G++  A   F+ +  ++  SWN++I   
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAH 183

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDV 364
             + D+ GA+++F +M+ +  KP+  T+ +++S  S    L  G +IH ++V      D+
Sbjct: 184 SQSGDWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDL 242

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            +  ALI MY +CG+  EAR +F++MK  +++VSWN MIG    +G   EALEL++ +  
Sbjct: 243 VVATALINMYGKCGSSHEAREVFDKMK-KRDMVSWNVMIGCYVQNGDFHEALELYQKLDM 301

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
                T  TF+S+L AC+    + +GR    S + E G++  +    +LV++  + G LE
Sbjct: 302 EGFKRTKATFVSILGACSSVKALAQGRL-VHSHILERGLDSEVAVATALVNMYAKCGSLE 360

Query: 485 DAMDLIKGMPFEPDKAVWGALLGA 508
           +A  +   M    D   W  L+GA
Sbjct: 361 EARKVFNAMK-NRDAVAWSTLIGA 383



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 137/255 (53%), Gaps = 13/255 (5%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMP--QKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
           DT+  NA++S Y +  +L  A   F+ M   Q+N+VSWN+MIA    N     A+ L+ +
Sbjct: 41  DTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWR 100

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV-PINNALITMYARCGA 379
           M ++G   D  TF S+L   S +     G +IH  V  + +     + NAL+TMYAR G+
Sbjct: 101 MNLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGS 157

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           + +A+ +F+ ++  ++  SWNA+I   +  G  + AL +FK M+   + P   T+I+V+S
Sbjct: 158 VGDAKRMFQSLQ-TRDETSWNAVILAHSQSGDWSGALRIFKEMKC-DMKPNSTTYINVIS 215

Query: 440 ACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
             +   ++ EGR+ H + + N  G +  +    +L+++ G+ G   +A ++   M  + D
Sbjct: 216 GFSTPEVLPEGRKIHAEIVAN--GFDSDLVVATALINMYGKCGSSHEAREVFDKMK-KRD 272

Query: 499 KAVWGALLGACRVHN 513
              W  ++G C V N
Sbjct: 273 MVSWNVMIG-CYVQN 286



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 25/222 (11%)

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARI 385
           +PD  TF ++L   S   D+  G  +H+ +  +    D  + NALI+MY +C ++V+AR 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 386 IFEEMKL-LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA-- 442
           +FE M    +NVVSWNAMI   A +G +TEAL L+  M    +   ++TF+SVL AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 443 ------HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
                 H  +   G   F+S+ N            +LV +  R G + DA  + + +   
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLAN------------ALVTMYARFGSVGDAKRMFQSLQTR 171

Query: 497 PDKAVWGALLGACRVHNNVELA-QVAAEALMKVEPENSTPYV 537
            D+  W A++ A     +   A ++  E    ++P NST Y+
Sbjct: 172 -DETSWNAVILAHSQSGDWSGALRIFKEMKCDMKP-NSTTYI 211


>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
 gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
          Length = 596

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 169/482 (35%), Positives = 280/482 (58%), Gaps = 26/482 (5%)

Query: 108 ANAIEFFDRMPGRDSASLSALVSGLIQN-GELDEAARVLVKCGSRCDGGEDLVR---AYN 163
           A ++  FD +P +++ S ++L++ L +  G L +A R+L       DG     R   +YN
Sbjct: 81  AASLAAFDDLPHKNAHSYNSLLAALARGRGTLPDALRLL-------DGMPPASRNVVSYN 133

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
           T+I    + GR  EA ++F ++    DRG G  +   +  +  S     A   D    RE
Sbjct: 134 TVISSLARHGRESEALRVFAQLAR--DRGLGQQQVAIDRFTVVSAASACAGLRDARHLRE 191

Query: 224 IFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279
           +   +    +E      N M+  Y     +E+A  +F +M   D+++W +M++GY +   
Sbjct: 192 LHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASM 251

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           L+ A+  F  MP ++ ++W ++I+G E N + E A++LF +M  EG  P      S L  
Sbjct: 252 LDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGA 311

Query: 340 SSGIVDLHLGMQIHQMVTKTVIPDVPIN----NALITMYARCGAIVEARIIFEEMKLLKN 395
            + +  +  G ++H  + +  I   P N    NALI MY++CG +V A  +F+ M L ++
Sbjct: 312 CAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRM-LERD 370

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           ++SWN+M+ G + +G   ++L +F+ M   +V PTY+TF++VL+AC+HAGLV +GR+  +
Sbjct: 371 IISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILE 430

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGACRVH 512
           SM  ++G+EPR EH+A+ +D +GR+ +LE+A + IKG+  +        WGALLGAC VH
Sbjct: 431 SM-QDHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVH 489

Query: 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
            N+E+A+  AEAL ++EPENS  YV+L N+Y+  G+WDDA +VR LMK   ++K   YSW
Sbjct: 490 GNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVRALMKGKGLRKDQAYSW 549

Query: 573 VD 574
           ++
Sbjct: 550 IE 551



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 161/335 (48%), Gaps = 33/335 (9%)

Query: 26  VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNS 85
           V+  N M+  Y  +   G +E+AR +FD M  RD V+W ++I+GY +   +++A+++F+ 
Sbjct: 205 VIMANAMVDAYSKA---GRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDM 261

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS-ALVSGLIQNGELDEAARV 144
           MPA++ ++W A+ISG  QNG+   A+E F+RM G        ALVS L    ++   AR 
Sbjct: 262 MPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARG 321

Query: 145 LVKCG---SRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
               G    R  G +   V  +N LI  Y + G +  A  +FD++             +R
Sbjct: 322 KEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRM------------LER 369

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEEASNLF 256
           +I+SWNSM+  ++  G    +  +FE+ML+ +      ++  +++   H   + +   + 
Sbjct: 370 DIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRIL 429

Query: 257 VKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK----NLVSWNSMIAGCETN 308
             M      P    + A +    +   LE A +F K +  K       SW +++  C  +
Sbjct: 430 ESMQDHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVH 489

Query: 309 KDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMSSG 342
            + E A ++   + Q+E E   R+   S +  ++G
Sbjct: 490 GNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAG 524



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 36/302 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  Y K   +  AR +FD+M  RD VSW  MI+GY     +  L++A  +FD+MP +D 
Sbjct: 211 MVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCR---ASMLDDAVQVFDMMPAQDA 267

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVV----SWNAMISGFLQNGDVANAIE---- 112
           + W  +ISG+ + GE E AL LF  M    VV    +  + +    + G VA   E    
Sbjct: 268 IAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGF 327

Query: 113 FFDRMPGRDSASL---SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
              R  G D  ++   +AL+    + G++  A  V  +   R     D++ ++N+++ G+
Sbjct: 328 ILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLER-----DII-SWNSMVTGF 381

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
              G+ +++  +F+++  +          +   V++ +++   + AG V   R I E M 
Sbjct: 382 SHNGQGKQSLAVFERMLKD--------EVQPTYVTFLAVLTACSHAGLVSDGRRILESMQ 433

Query: 230 ERDTFSWNTMISGYIHVL----DMEEAS----NLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           +          + +I  L     +EEAS     L  K+    T +W A++      GN+E
Sbjct: 434 DHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIE 493

Query: 282 LA 283
           +A
Sbjct: 494 IA 495


>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g29230-like [Glycine max]
          Length = 446

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 144/374 (38%), Positives = 233/374 (62%), Gaps = 3/374 (0%)

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
           +N+ +W +++  +    D+VSAR +F+   + D   WN ++SGYI + DM  A  LF +M
Sbjct: 23  KNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIELGDMVAARELFDRM 82

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
           P  D ++WN ++SGYA  G +EL +  F+ MP +N+ SWN +I G   N  ++ A++ F 
Sbjct: 83  PDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFK 142

Query: 320 QMQVEGEK-PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARC 377
           +M V+G   P+ +T  ++LS  S + DL +G  +H          ++ + NALI MYA+C
Sbjct: 143 RMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKC 202

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G I +A  +F+ + + K++++WN +I   A H  A +AL LF+ M+     P  +TF+ +
Sbjct: 203 GVIEKALDVFDGLDV-KDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGI 261

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           LSAC H GLV  G  HF+SMV++Y I P+IEH+  +VD++GR G +  A+D+++ MP EP
Sbjct: 262 LSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAVDIVRKMPMEP 321

Query: 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
           D  +W ALLGACR + NVE+A++A + L+++EP N   +V+L N+Y D+GR  D   +++
Sbjct: 322 DVVIWAALLGACRXYKNVEMAELALQRLIELEPNNPGNFVMLSNIYKDLGRSQDVARLKV 381

Query: 558 LMKSNNIKKPTGYS 571
            M+    +K  G S
Sbjct: 382 AMRDTGFRKVPGCS 395



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 182/355 (51%), Gaps = 47/355 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ +V   +M  AR+LFD  PQ DVV WNV++SGYI     G +  AR LFD MP+ D 
Sbjct: 31  VVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIE---LGDMVAARELFDRMPDCDV 87

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
           ++WNTV+SGYA  GE+E  +++F  MPARNV SWN +I G+++NG    A+E F RM   
Sbjct: 88  MSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVD 147

Query: 118 ----PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
               P  +  ++ A++S   + G+L+    V V   S    G   V   N LI  Y + G
Sbjct: 148 GVVVP--NDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVG--NALIDMYAKCG 203

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML---E 230
            +E+A  +FD + V            ++I++WN++I   A       A  +FE M    E
Sbjct: 204 VIEKALDVFDGLDV------------KDIITWNTIINSLAMHXHAADALSLFEGMKRAGE 251

Query: 231 R-DTFSWNTMIS----------GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279
           R D  ++  ++S          G++H   M +   +  ++ H     +  MV    + G 
Sbjct: 252 RPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEH-----YGCMVDLLGRAGL 306

Query: 280 LELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           +  A+D  ++MP + ++V W +++  C   K+ E A +L +Q  +E E  +   F
Sbjct: 307 INQAVDIVRKMPMEPDVVIWAALLGACRXYKNVEMA-ELALQRLIELEPNNPGNF 360


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 203/626 (32%), Positives = 313/626 (50%), Gaps = 71/626 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGF---------------- 44
           +I  Y K  E+  A ++FD+M  +D +SW  M++GY+   G  F                
Sbjct: 268 LIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVH-HGCYFEVLQLLDEMKRKHIKM 326

Query: 45  -----------------LEEAR----YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
                            LE+ +    Y   +    D V    ++S YAK GE+++A   F
Sbjct: 327 NKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFF 386

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGL--IQNGE 137
            S+  R++V W+A +S  +Q G    A+  F  M       D   LS+LVS    I +  
Sbjct: 387 LSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSR 446

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           L +     V    + D G D+  A  TL+  Y +      A  LF+++            
Sbjct: 447 LGKMMHCYV---IKADMGSDISVA-TTLVSMYTRCKSFMYAMTLFNRM------------ 490

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA- 252
             +++V+WN++I  + K GD   A E+F ++    ++ D+ +  +++S    + D+    
Sbjct: 491 HYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGI 550

Query: 253 ---SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ-KNLVSWNSMIAGCETN 308
               N+       +     A++  YA+ G+L  A + F      K+ VSWN MIAG   N
Sbjct: 551 CFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHN 610

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPIN 367
                AI  F QM++E  +P+  TF +IL   S +  L   M  H  + +   I    I 
Sbjct: 611 GCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIRMGFISSTLIG 670

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           N+LI MYA+ G +  +   F EM+  K  +SWNAM+ G A HG    AL LF  M+   V
Sbjct: 671 NSLIDMYAKSGQLSYSEKCFHEMEN-KGTISWNAMLSGYAMHGQGEVALALFSLMQETHV 729

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
               +++ISVLSAC HAGL++EGR  F+SM  ++ +EP +EH+A +VD++G  G  ++ +
Sbjct: 730 PVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLFDEVL 789

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
            LI  MP EPD  VWGALLGAC++H+NV+L ++A   L+K+EP N+  Y++L ++YA  G
Sbjct: 790 CLIDKMPTEPDAQVWGALLGACKMHSNVKLGEIALHHLLKLEPRNAVHYIVLSDIYAQCG 849

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWV 573
           RW DA   R  M  + +KK  GYSWV
Sbjct: 850 RWIDARRTRSNMTDHGLKKNPGYSWV 875



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 154/587 (26%), Positives = 270/587 (45%), Gaps = 67/587 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG--------------SGFLE 46
           ++  Y K   +  ARK+FD+MP +DV SWN MISG   S                 G   
Sbjct: 168 LVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEP 227

Query: 47  EARYLFDIMPE------------------RDC---VTWNTVISGYAKTGEMEEALRLFNS 85
           ++  + ++ P                   R C   V  N++I  Y+K GE++ A ++F+ 
Sbjct: 228 DSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFGVVSNSLIDMYSKCGEVKLAHQIFDQ 287

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA--SLSALVSGLIQNGELD-EAA 142
           M  ++ +SW  M++G++ +G     ++  D M  +      +S + S L      D E  
Sbjct: 288 MWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKG 347

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
           + +     +     D+V A   ++  Y + G +++A++ F  +       EG     R++
Sbjct: 348 KEVHNYALQLGMTSDIVVA-TPIVSMYAKCGELKKAKEFFLSL-------EG-----RDL 394

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH- 261
           V W++ +    +AG    A  IF++M         T++S  +     E +S+   KM H 
Sbjct: 395 VVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSAC-AEISSSRLGKMMHC 453

Query: 262 --------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
                    D      +VS Y +  +   A+  F RM  K++V+WN++I G     D   
Sbjct: 454 YVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRL 513

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALIT 372
           A+++F+++Q+ G +PD  T  S+LS  + + DL+LG+  H  + K  I  ++ +  ALI 
Sbjct: 514 ALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALID 573

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MYA+CG++  A  +F   K +K+ VSWN MI G   +G A EA+  F  M+   V P  +
Sbjct: 574 MYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLV 633

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TF+++L A ++  ++ E    F + +   G         SL+D+  + G+L  +      
Sbjct: 634 TFVTILPAVSYLSILREAMA-FHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHE 692

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE--PENSTPYV 537
           M        W A+L    +H   E+A +A  +LM+    P +S  Y+
Sbjct: 693 ME-NKGTISWNAMLSGYAMHGQGEVA-LALFSLMQETHVPVDSVSYI 737



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 136/488 (27%), Positives = 228/488 (46%), Gaps = 35/488 (7%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D      ++  Y K G ++ A ++F+ MP ++V SWNAMISG  Q+ +   A+E F R
Sbjct: 159 ECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQR 218

Query: 117 MPGR-----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
           M        DS S+  L   + +  ++D    +      RC  G       N+LI  Y +
Sbjct: 219 MQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFG----VVSNSLIDMYSK 274

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--- 228
            G V+ A ++FD++ V  D            +SW +M+  Y   G      ++ ++M   
Sbjct: 275 CGEVKLAHQIFDQMWVKDD------------ISWATMMAGYVHHGCYFEVLQLLDEMKRK 322

Query: 229 -LERDTFSWNTMISGYIHVLDME---EASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELA 283
            ++ +  S    +       D+E   E  N  +++    D +    +VS YA+ G L+ A
Sbjct: 323 HIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKA 382

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEG-AIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
            +FF  +  ++LV W++ ++       Y G A+ +F +MQ EG KPD+   SS++S  + 
Sbjct: 383 KEFFLSLEGRDLVVWSAFLSAL-VQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAE 441

Query: 343 IVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           I    LG  +H  V K  +  D+ +   L++MY RC + + A  +F  M   K+VV+WN 
Sbjct: 442 ISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMH-YKDVVAWNT 500

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           +I G    G    ALE+F  ++   V P   T +S+LSACA    +  G   F   + + 
Sbjct: 501 LINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGIC-FHGNIIKN 559

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           GIE  +    +L+D+  + G L  A +L        D+  W  ++ A  +HN      ++
Sbjct: 560 GIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMI-AGYLHNGCANEAIS 618

Query: 522 AEALMKVE 529
               MK+E
Sbjct: 619 TFNQMKLE 626



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 130/287 (45%), Gaps = 34/287 (11%)

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           ++I  + LE D F    ++  Y  +  ++ A  +F KMP  D  +WNAM+SG +Q  N  
Sbjct: 151 QDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPC 210

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            AL+ F+RM                             QM+ EG +PD  +  ++    S
Sbjct: 211 EALEIFQRM-----------------------------QME-EGVEPDSVSILNLAPAVS 240

Query: 342 GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
            + D+     IH  V +  +  V ++N+LI MY++CG +  A  IF++M  +K+ +SW  
Sbjct: 241 RLEDVDSCKSIHGYVVRRCVFGV-VSNSLIDMYSKCGEVKLAHQIFDQM-WVKDDISWAT 298

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           M+ G   HG   E L+L   M+   +    I+ ++ + A      +E+G++   +   + 
Sbjct: 299 MMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKE-VHNYALQL 357

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           G+   I     +V +  + G L+ A +    +    D  VW A L A
Sbjct: 358 GMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGR-DLVVWSAFLSA 403



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 77/131 (58%), Gaps = 2/131 (1%)

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           +L+ WNS+I        ++ AIK +  M   G +PD++TF+ +L   +G +D H G+ IH
Sbjct: 91  SLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIH 150

Query: 354 Q-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
           Q + ++ +  DV I   L+ MY + G +  AR +F++M   K+V SWNAMI G +     
Sbjct: 151 QDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMP-GKDVASWNAMISGLSQSSNP 209

Query: 413 TEALELFKSMR 423
            EALE+F+ M+
Sbjct: 210 CEALEIFQRMQ 220


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 201/652 (30%), Positives = 332/652 (50%), Gaps = 85/652 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS-GFLEEARYLFDIMPERD 59
           +I      R +A+ RK+ D +   +     ++ +  +S  G  G L +AR +FD MPER+
Sbjct: 73  LICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERN 132

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNVV----SWNAMISGFLQNGDVANAIEFFD 115
            V++ +VI+GY++ G+  EA+RL+  M   ++V    ++ ++I     + DV    +   
Sbjct: 133 LVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHA 192

Query: 116 RMPGRDSAS----LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
           ++   +S+S     +AL++  ++  ++ +A+RV      +     DL+ +++++I G+ Q
Sbjct: 193 QVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMK-----DLI-SWSSIIAGFSQ 246

Query: 172 RGRVEEA----------------RKLFDKIPVNC------DRGEG------NVRFKRNIV 203
            G   EA                  +F      C      D G              N +
Sbjct: 247 LGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAI 306

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-- 261
           +  S+   YA+ G + SAR +F+Q+   DT SWN +I+G  +    +EA ++F +M    
Sbjct: 307 AGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSG 366

Query: 262 --PDTLT--------------------------W---------NAMVSGYAQIGNLELAL 284
             PD ++                          W         N++++ Y    +L    
Sbjct: 367 FIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCF 426

Query: 285 DFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
           + F+      + VSWN+++  C  ++     ++LF  M V   +PD  T  ++L     I
Sbjct: 427 NLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEI 486

Query: 344 VDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             L LG Q+H    KT + P+  I N LI MYA+CG++ +AR IF+ M   ++VVSW+ +
Sbjct: 487 SSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDN-RDVVSWSTL 545

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I G A  GF  EAL LFK M+S  + P ++TF+ VL+AC+H GLVEEG + + +M  E+G
Sbjct: 546 IVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHG 605

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           I P  EH + +VD++ R GRL +A   I  M  EPD  VW  LL AC+   NV LAQ AA
Sbjct: 606 ISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAA 665

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           E ++K++P NST +VLL +M+A  G W++A  +R  MK +++KK  G SW++
Sbjct: 666 ENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIE 717



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 138/520 (26%), Positives = 226/520 (43%), Gaps = 76/520 (14%)

Query: 28  SWNVMISGYIS----SRGSGFLEEARYLFDIMPERDC----VTWNTVISGYAKTGEMEEA 79
           S+ + +  YIS       S  L + R + D +   +C    +  N ++S Y K G + +A
Sbjct: 62  SFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDA 121

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELD 139
             +F+ MP RN+VS+ ++I+G+ QNG  A AI  + +M   D      LV      G + 
Sbjct: 122 REVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQED------LVPDQFAFGSII 175

Query: 140 EAARVLVKCGSRCDGG--------------EDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           +A      C S  D G                 + A N LI  Y +  ++ +A ++F  I
Sbjct: 176 KA------CASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGI 229

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
           P+            ++++SW+S+I  +++ G    A    ++ML    F  N  I G   
Sbjct: 230 PM------------KDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGS-- 275

Query: 246 VLDMEEASNLFVKMPHPD------------TLTWNA-----MVSGYAQIGNLELALDFFK 288
              ++  S+L      PD             L  NA     +   YA+ G L  A   F 
Sbjct: 276 --SLKACSSLL----RPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFD 329

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
           ++ + +  SWN +IAG   N   + A+ +F QM+  G  PD  +  S+L   +  + L  
Sbjct: 330 QIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQ 389

Query: 349 GMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           GMQIH  + K   + D+ + N+L+TMY  C  +     +FE+ +   + VSWN ++  C 
Sbjct: 390 GMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACL 449

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPR 466
            H    E L LFK M   +  P +IT  ++L  C     ++ G Q H  S+  + G+ P 
Sbjct: 450 QHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSL--KTGLAPE 507

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
                 L+D+  + G L  A  +   M    D   W  L+
Sbjct: 508 QFIKNGLIDMYAKCGSLGQARRIFDSMD-NRDVVSWSTLI 546


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 181/518 (34%), Positives = 282/518 (54%), Gaps = 52/518 (10%)

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           LF+ +   N+  WN MI G + N    +AIEF+  M       ++ +   ++    +  +
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           L    ++   +VK G  CD     V    +L+  Y + G +E+A K+FD IP        
Sbjct: 128 LQLGVKIHTLVVKGGFDCD-----VFVKTSLVCLYAKCGYLEDAHKVFDDIP-------- 174

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISG-------- 242
                +N+VSW ++I  Y   G    A ++F ++LE     D+F+   ++S         
Sbjct: 175 ----DKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLN 230

Query: 243 ---YIH--VLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
              +IH  +++M    N+FV           ++V  YA+ GN+E A   F  MP+K++VS
Sbjct: 231 SGEWIHKCIMEMGMVRNVFVG---------TSLVDMYAKCGNMEKARSVFDGMPEKDIVS 281

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           W +MI G   N   + AI LF+QMQ E  KPD +T   +LS  + +  L LG  +  +V 
Sbjct: 282 WGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVD 341

Query: 358 KTVIPDVPI-NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           +      P+   ALI +YA+CG++  A  +F+ MK  K+ V WNA+I G A +G+   + 
Sbjct: 342 RNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKE-KDRVVWNAIISGLAMNGYVKISF 400

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
            LF  +    + P   TFI +L  C HAGLV+EGR++F SM   + + P IEH+  +VD+
Sbjct: 401 GLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDL 460

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           +GR G L++A  LI+ MP E +  VWGALLGACR+H + +LA++A + L+++EP NS  Y
Sbjct: 461 LGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNY 520

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           VLL N+Y+   +WD+A +VRL M    I+KP G SW++
Sbjct: 521 VLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIE 558



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 118/455 (25%), Positives = 207/455 (45%), Gaps = 82/455 (18%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISS-------------RGSGFL----------EEARY 50
            R LF ++ Q ++  WN MI G +S+             R  GFL          +    
Sbjct: 65  TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACAR 124

Query: 51  LFDIMP-------------ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM 97
           L D+               + D     +++  YAK G +E+A ++F+ +P +NVVSW A+
Sbjct: 125 LLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAI 184

Query: 98  ISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCD 153
           ISG++  G    AI+ F R+       DS ++  ++S   Q G+L+    +      +C 
Sbjct: 185 ISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWI-----HKCI 239

Query: 154 GGEDLVRAY---NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
               +VR      +L+  Y + G +E+AR +FD +P            +++IVSW +MI 
Sbjct: 240 MEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMP------------EKDIVSWGAMIQ 287

Query: 211 CYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS--------NLFVK 258
            YA  G    A ++F QM    ++ D ++   ++S    +  +E           N F+ 
Sbjct: 288 GYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLY 347

Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
            P   T    A++  YA+ G++  A + FK M +K+ V WN++I+G   N   + +  LF
Sbjct: 348 NPVLGT----ALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLF 403

Query: 319 IQMQVEGEKPDRHTFSSIL--SMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNALITMY 374
            Q++  G KPD +TF  +L     +G+VD   G +    + +  ++ P +     ++ + 
Sbjct: 404 GQVEKLGIKPDGNTFIGLLCGCTHAGLVD--EGRRYFNSMYRFFSLTPSIEHYGCMVDLL 461

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            R G + EA  +   M +  N + W A++G C  H
Sbjct: 462 GRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIH 496



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 144/308 (46%), Gaps = 38/308 (12%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
           L  D +  N ++       D      LF ++  P+   WN M+ G               
Sbjct: 42  LCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRG--------------- 86

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
                 LVS          N  ++ AI+ +  M+ EG  P+  TF  +L   + ++DL L
Sbjct: 87  ------LVS----------NDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQL 130

Query: 349 GMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G++IH +V K     DV +  +L+ +YA+CG + +A  +F+++   KNVVSW A+I G  
Sbjct: 131 GVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIP-DKNVVSWTAIISGYI 189

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
             G   EA+++F+ +    + P   T + VLSAC   G +  G    K ++ E G+   +
Sbjct: 190 GVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIM-EMGMVRNV 248

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
               SLVD+  + G +E A  +  GMP E D   WGA++    ++    L + A +  ++
Sbjct: 249 FVGTSLVDMYAKCGNMEKARSVFDGMP-EKDIVSWGAMIQGYALNG---LPKEAIDLFLQ 304

Query: 528 VEPENSTP 535
           ++ EN  P
Sbjct: 305 MQRENVKP 312



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 163/382 (42%), Gaps = 81/382 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           ++  Y K   +  A K+FD++P ++VVSW  +ISGYI   G G   EA  +F      ++
Sbjct: 153 LVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYI---GVGKFREAIDMFRRLLEMNL 209

Query: 55  MPE---------------------------------RDCVTWNTVISGYAKTGEMEEALR 81
            P+                                 R+     +++  YAK G ME+A  
Sbjct: 210 APDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARS 269

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNG- 136
           +F+ MP +++VSW AMI G+  NG    AI+ F +M       D  ++  ++S   + G 
Sbjct: 270 VFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGA 329

Query: 137 -ELDEAARVLVKCGSRCDGGEDLVRAY--NTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
            EL E    LV      D  E L        LI  Y + G +  A ++F  +        
Sbjct: 330 LELGEWVSGLV------DRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMK------- 376

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDM 249
                +++ V WN++I   A  G V  +  +F Q+    ++ D  ++  ++ G  H   +
Sbjct: 377 -----EKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLV 431

Query: 250 EEASNLFVKMPHPDTLT-----WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIA 303
           +E    F  M    +LT     +  MV    + G L+ A    + MP + N + W +++ 
Sbjct: 432 DEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLG 491

Query: 304 GCETNKDY---EGAIKLFIQMQ 322
            C  ++D    E A+K  I+++
Sbjct: 492 ACRIHRDTQLAELALKQLIELE 513


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 180/520 (34%), Positives = 281/520 (54%), Gaps = 55/520 (10%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
           ++S Y + G++  A +LF+ +P  N+  W  +     + G    A+  F  M        
Sbjct: 68  LMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKE----- 122

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCD--GGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
                GL  N  +     +L  CG   D   GE++    +T+I+                
Sbjct: 123 -----GLRPNQFV--LPSILKACGHLSDRRTGENM----HTVIL---------------- 155

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
                         F+ +    +++I  Y+K G V  A  +F+ ++++D    N M+SGY
Sbjct: 156 -----------KNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGY 204

Query: 244 IHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMP----QKNL 295
                + EA NL  KM      P+ ++WN +++G++Q+G+  +  + F+ M     + ++
Sbjct: 205 AQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDV 264

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-Q 354
           VSW S+I+G   N         F +M  +G  P   T SS+L   + + +L  G +IH  
Sbjct: 265 VSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGY 324

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
            +   V  DV + +AL+ MYA+CG I EA+I+F  M   +N V+WN++I G A+HG+  E
Sbjct: 325 AMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPE-RNTVTWNSLIFGYANHGYCNE 383

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           A+ELF  M        ++TF +VL+AC+HAG+VE G   F+ M  +Y IEPR+EH+A +V
Sbjct: 384 AIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMV 443

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D++GR G+L +A DLIK MP EPDK VWGALLGACR H N+ELA+VAAE L ++EPE+  
Sbjct: 444 DLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPG 503

Query: 535 PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             +LL N+YAD GRW +A +++ +MK     K  G SW++
Sbjct: 504 SSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 543



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/462 (22%), Positives = 196/462 (42%), Gaps = 99/462 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------- 53
           ++S Y +  +++ ARKLFD++P  ++  W ++++G  + R  GF EEA   F        
Sbjct: 68  LMSFYTECGQLSNARKLFDKIPNTNIRRW-IVLTGACARR--GFYEEALSAFSEMQKEGL 124

Query: 54  -----IMP---------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                ++P                           E D    + +I  Y+K G +E+A R
Sbjct: 125 RPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACR 184

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F+ +  +++V  NAM+SG+ Q+G V  A+    +M       +  S + L++G  Q G+
Sbjct: 185 VFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGD 244

Query: 138 ---LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
              + E  R++       +G E  V ++ ++I G+ Q     E    FD      D+G  
Sbjct: 245 KSMVSEVFRLMT-----ANGVEPDVVSWTSVISGFVQNFHNHEG---FDAFKEMLDQG-- 294

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDME 250
              F  + V+ +S++       ++   +EI    +    E+D +  + ++  Y     + 
Sbjct: 295 ---FCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYIS 351

Query: 251 EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
           EA  LF  MP  +T+TWN+++ GYA  G    A++ F                       
Sbjct: 352 EAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFN---------------------- 389

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINN 368
                    QM+    K D  TF+++L+  S  G+V+L   +         + P +    
Sbjct: 390 ---------QMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYA 440

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            ++ +  R G + EA  + + M +  +   W A++G C +HG
Sbjct: 441 CMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHG 482


>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 799

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 191/619 (30%), Positives = 309/619 (49%), Gaps = 64/619 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  +VK  ++A AR LFD MP+R VVS+  M+   +     G + EA  L++  P    
Sbjct: 158 MVHEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMK---RGRVAEAVELYEQCPSGSV 214

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPA-------------------------------- 88
             +   ISG+ +      AL +F  M +                                
Sbjct: 215 AFFTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGS 274

Query: 89  --------RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
                    ++   N++I+ +L+ GD A A + FD M  +D  S +AL+    ++G+LD 
Sbjct: 275 AIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDG 334

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A RVL     R +       ++ TLI  + QRG   EA KL+ ++  +  R         
Sbjct: 335 ARRVLDAMPERNE------VSWGTLIARHEQRGNAAEAVKLYSQMLADGCRP-------- 380

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMISGYIHVLDMEEASNLF 256
           NI  ++S++   A   D+     I  + L+     + F  +++I  Y       +A  +F
Sbjct: 381 NISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIF 440

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
             +P  + + WN++ SGY+  G +  A+  FK+MP +NL SWN++I+G   N+ +  A++
Sbjct: 441 DTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALR 500

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYA 375
            F  M   G+ P   TFSS+L   + +  L  G   H    K  + + + I  AL  MYA
Sbjct: 501 SFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYA 560

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           + G +  ++ +F +M   +N V+W AMI G A +G A E++ LF+ M +  + P   TF+
Sbjct: 561 KSGDLQSSKRMFYQMP-ERNDVTWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFL 619

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           ++L AC+H GLVE+   +F+ M   +GI P+ +H+  +VD++ R GRL +A  L+   P 
Sbjct: 620 ALLFACSHGGLVEQAIHYFEKM-QAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPS 678

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           + +   W ALL AC  + N E+ + AA+ L ++  +N+  YVLL NMYA  GRW DA  +
Sbjct: 679 KSEANSWAALLSACNTYKNEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARI 738

Query: 556 RLLMKSNNIKKPTGYSWVD 574
           R+LMK   +KK  G SWV 
Sbjct: 739 RVLMKGTTLKKDGGCSWVQ 757



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 131/480 (27%), Positives = 226/480 (47%), Gaps = 56/480 (11%)

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
           T  + +A+  E + A     +  A +  +++ M+   ++ GD+A+A   FD MP R   S
Sbjct: 126 TTYAAFARAAECDRAFGDCVAAGAASPFTYDFMVHEHVKAGDIASARGLFDGMPERSVVS 185

Query: 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK 184
            + +V  L++ G + EA  +  +C S        V  +   I G+ +      A  +F K
Sbjct: 186 YTTMVDALMKRGRVAEAVELYEQCPS------GSVAFFTATISGFVRNELHHNALGVFRK 239

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS-----WNTM 239
           + V+C         + N +++  MI     AG+   A  I    ++ + F       N++
Sbjct: 240 M-VSCG-------VRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSL 291

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           I+ Y+ + D   A  +F +M   D ++W A++  Y++ G+L+ A      MP++N VSW 
Sbjct: 292 ITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWG 351

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           ++IA  E   +   A+KL+ QM  +G +P+   FSS+LS  + + DL  G +IH    K 
Sbjct: 352 TLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKM 411

Query: 360 -VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
               +V ++++LI MY +C    +A+ IF+ +   KN+V WN++  G + +G   EA+ L
Sbjct: 412 GSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLP-EKNIVCWNSLASGYSYNGKMVEAMYL 470

Query: 419 FKSM-------------------------RSFKVL------PTYITFISVLSACAH-AGL 446
           FK M                         RSF  +      P  ITF SVL ACA+   L
Sbjct: 471 FKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLCSL 530

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           V     H K++  + G+E  I    +L D+  + G L+ +  +   MP E +   W A++
Sbjct: 531 VTGKMAHAKTI--KLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMP-ERNDVTWTAMI 587


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 226/368 (61%), Gaps = 2/368 (0%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           NSM+  Y   G++  AR +F++M  RD  SWN+MI+GY+   ++E AS LF +MP  D +
Sbjct: 148 NSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLV 207

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           + NAM+ GY + G  ELA   F+ M  K++V+W SMI+    N+    A+ LF +M   G
Sbjct: 208 SCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLG 267

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT--KTVIPDVPINNALITMYARCGAIVEA 383
            +PD     S+LS  + +  +  G  +H  V+  K  +    I +ALI MY++CG I  A
Sbjct: 268 LRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENA 327

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
             +F  +   +N+  WN+MI G A HG A EAL++F  M    + P  ITF+ +LS C+H
Sbjct: 328 YHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSH 387

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
            GLVEEG+ +F+SM  +Y I PRI+H+  ++D+ GR GRLEDA+ +I+ MPFE D   W 
Sbjct: 388 GGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWK 447

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
           A+L A   H ++E+ + AA   +++ P++S+ YVLL N+YA  GRWDD  ++RL+M+   
Sbjct: 448 AILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRG 507

Query: 564 IKKPTGYS 571
           +KK  G S
Sbjct: 508 VKKIAGCS 515



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 159/319 (49%), Gaps = 31/319 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  Y+   E+  AR++FD MP RDVVSWN MI+GY+    +G +E A  LFD MPERD 
Sbjct: 150 MVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLK---AGEIELASELFDEMPERDL 206

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG- 119
           V+ N +I GY K G  E A ++F +M  ++VV+W +MIS ++QN     A++ F  M   
Sbjct: 207 VSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSL 266

Query: 120 ---RDSASLSALVSGLIQNGELDEAARVLVKCG-SRCDGGEDLVRAYNTLIVGYGQRGRV 175
               D  ++ +++S +   G ++E   +      ++ +     + +   LI  Y + G +
Sbjct: 267 GLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGS--ALIDMYSKCGYI 324

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LER 231
           E A  +F  I             +RNI  WNSMI   A  G    A +IF +M    +E 
Sbjct: 325 ENAYHVFRSI-----------SHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEP 373

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDF 286
           +  ++  ++S   H   +EE    F  M       P    +  M+  + + G LE AL  
Sbjct: 374 NEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGV 433

Query: 287 FKRMP-QKNLVSWNSMIAG 304
            + MP + +L++W ++++ 
Sbjct: 434 IQNMPFEADLLAWKAILSA 452



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 183/396 (46%), Gaps = 44/396 (11%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N M+  YI     G +E AR +FD MP RD V+WN++I+GY K GE+E A  LF+ MP R
Sbjct: 148 NSMVRMYIDF---GEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPER 204

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAA---RVLV 146
           ++VS NAMI G+ + G    A + F+ M  +D  + ++++S  +QN    +A    R ++
Sbjct: 205 DLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREML 264

Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
             G R DG      A  +++      G VEE + L   + +N       +      +  +
Sbjct: 265 SLGLRPDG-----PAIVSVLSAIADLGFVEEGKWLHAYVSMN------KIELSSGFIG-S 312

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTF-SWNTMISGY-IHVLDMEEASNLFVKMP---- 260
           ++I  Y+K G + +A  +F  +  R     WN+MISG  IH L   EA ++FV+M     
Sbjct: 313 ALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGL-AREALDIFVEMERMDI 371

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN-----KDYEGAI 315
            P+ +T+  ++S  +  G +E    +F+ M +K  +       GC  +        E A+
Sbjct: 372 EPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDAL 431

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYA 375
            +   M  E    D   + +ILS S     + +G        +    D      L  +YA
Sbjct: 432 GVIQNMPFEA---DLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYA 488

Query: 376 RCGA---IVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           + G    + + R++  +  + K        I GC+S
Sbjct: 489 KAGRWDDVAKIRLMMRQRGVKK--------IAGCSS 516


>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
 gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
          Length = 733

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 212/680 (31%), Positives = 324/680 (47%), Gaps = 123/680 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGF---------------- 44
           +IS Y   R+   +  +FD   Q+D   WN +I  + S+ G+ F                
Sbjct: 70  LISLYASFRKPHSSTYVFDSTNQKDTFLWNSIIKSHFSN-GNYFKAFDFYIQMRYDNTPP 128

Query: 45  -----------------LEEARYLFDIMPERDCVTWNTVISG-----YAKTGEMEEALRL 82
                            LEE +Y+  ++ +      N+ +       YAK G ME+A  +
Sbjct: 129 NQFTIPMIVATCAELLWLEEGKYIHGLVSKSGLFAENSAVGSSFVYMYAKCGVMEDASLM 188

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--GRDSASLSA--LVSGLIQNGEL 138
           F+ +  R+VVSW A++ G++ N D    +E    M   G D   +++  L  G    G L
Sbjct: 189 FDEIVVRDVVSWTALVIGYVHNDDSEKGLECLCEMRRIGGDGEKVNSRTLEGGFQACGNL 248

Query: 139 DE--AARVL----VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF---------- 182
               A R L    VK G  C     +V++  +L+  Y + G VEEA   F          
Sbjct: 249 GAMIAGRCLHGLAVKTGLGC---SQVVQS--SLLSMYSKCGNVEEAHNSFCQVVDKDVFS 303

Query: 183 -------------------------------DKIPVNCDR-GEGN---VR---------F 198
                                          D I V+C   G GN   VR          
Sbjct: 304 WTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHGLIV 363

Query: 199 KRNIV----SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASN 254
           +RN V      N+++  Y K G +  A ++F+ + E    SWNTM+ GY+H   ++ + +
Sbjct: 364 RRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVFGYVHCYIIKNSVD 423

Query: 255 LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
                   D    N+++  Y + GNL +A   F R  Q+++V+WN++I+    +  Y  A
Sbjct: 424 -------EDVSIANSLIDMYGKGGNLSIAWKMFCR-TQRDVVTWNTLISSYTHSGHYAEA 475

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITM 373
           I LF +M  E   P+  T   +LS    +  L  G  +HQ + +     +V +  AL+ M
Sbjct: 476 ITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALVDM 535

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
           YA+CG + ++R +F  MK  K+V+SWN MI G   HG A  A+E+F+ M    V P  IT
Sbjct: 536 YAKCGQLEQSRELFNSMKE-KDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVKPNAIT 594

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           F+S+LSAC HAG V+EG+Q F  M   Y I+P ++HFA + D++GR G L++A DL++ M
Sbjct: 595 FLSLLSACTHAGYVDEGKQLFDRM-QYYSIKPNLKHFACMADLLGRSGNLQEAEDLVQSM 653

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553
           P  PD  VWG LL AC++HN +E+    A+  ++ +PEN   Y++L NMY  +G+WD+A 
Sbjct: 654 PICPDGGVWGTLLSACKIHNEIEIGIRVAKCAIESDPENDGYYIMLSNMYGSMGKWDEAE 713

Query: 554 EVRLLMKSNNIKKPTGYSWV 573
             R LMK   I K  G+S V
Sbjct: 714 RARELMKERGIGKRAGWSAV 733



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 137/290 (47%), Gaps = 19/290 (6%)

Query: 226 EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
           +  L   T +  ++   +  ++    A+N+F+          + ++S YA       +  
Sbjct: 35  DSFLSNQTQTLQSLHKSHALIITTGNANNVFIS---------SKLISLYASFRKPHSSTY 85

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F    QK+   WNS+I    +N +Y  A   +IQM+ +   P++ T   I++  + ++ 
Sbjct: 86  VFDSTNQKDTFLWNSIIKSHFSNGNYFKAFDFYIQMRYDNTPPNQFTIPMIVATCAELLW 145

Query: 346 LHLGMQIHQMVTKTVI--PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           L  G  IH +V+K+ +   +  + ++ + MYA+CG + +A ++F+E+ ++++VVSW A++
Sbjct: 146 LEEGKYIHGLVSKSGLFAENSAVGSSFVYMYAKCGVMEDASLMFDEI-VVRDVVSWTALV 204

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYI---TFISVLSACAHAGLVEEGR-QHFKSMVN 459
            G   +  + + LE    MR        +   T      AC + G +  GR  H  ++  
Sbjct: 205 IGYVHNDDSEKGLECLCEMRRIGGDGEKVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKT 264

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
             G    ++  +SL+ +  + G +E+A +    +  + D   W +++G C
Sbjct: 265 GLGCSQVVQ--SSLLSMYSKCGNVEEAHNSFCQV-VDKDVFSWTSVIGVC 311


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 181/545 (33%), Positives = 286/545 (52%), Gaps = 37/545 (6%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN--- 104
           AR+LFD++P          +SG +K    +E + + +S+  R     +  I   L++   
Sbjct: 127 ARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQ 186

Query: 105 ------GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
                 G   +       M G D    +ALV    +NG++D A     +   +     D 
Sbjct: 187 SAASCQGSQTHCHALVRGMLG-DVFVQTALVDFYAKNGDMDSALMAFKEMPVK-----DP 240

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           +   N LI GY + G VEEAR+LFD +P            +R   SWNSMI CYA  G+ 
Sbjct: 241 I-PMNCLITGYSKSGDVEEARRLFDSMP------------RRTSASWNSMIACYAHGGEF 287

Query: 219 VSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPHPD---TLTWNAMV 271
             A  +F+QML      +  +  T+ S      D++        +   D    +   A++
Sbjct: 288 REALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTALM 347

Query: 272 SGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
             Y +   ++ A   F RMP++++V+W++MIAG   N     +++LF +M+    KP+  
Sbjct: 348 EMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEV 407

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEM 390
           T   +LS  + +    LG QI   +    +P    + +ALI MY +CG +  AR +F  M
Sbjct: 408 TLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRM 467

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
           +  K VV+WN+MI G A +GFA +A+ L++ M    + P  +TF+++L+AC HAGLV++G
Sbjct: 468 EQ-KVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKG 526

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
              F+ M  +  + P++EH A +VD++ + GRL +A   I  M  EP+  +W  LL ACR
Sbjct: 527 IAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACR 586

Query: 511 VHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGY 570
            H +VELA++AA  L+ +EP NS+ YVLL N+YAD G W D  E+R LM+S N++K + Y
Sbjct: 587 AHADVELAKLAAGKLVALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAY 646

Query: 571 SWVDF 575
           SW++ 
Sbjct: 647 SWIEL 651



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 195/424 (45%), Gaps = 63/424 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K  +M  A   F EMP +D +  N +I+GY     SG +EEAR LFD MP R  
Sbjct: 215 LVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGY---SKSGDVEEARRLFDSMPRRTS 271

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN++I+ YA  GE  EAL LF+ M               L+ G   NAI         
Sbjct: 272 ASWNSMIACYAHGGEFREALTLFDQM---------------LREGASPNAI--------- 307

Query: 121 DSASLSALVSGLIQNGELDEA--ARVLVKCGSRCDGGEDL--VRAYNTLIVGYGQRGRVE 176
              +++ + S   + G+LD    AR  ++        EDL  V  +  L+  Y +   ++
Sbjct: 308 ---TITTVFSICAKTGDLDTGRRARAWIR-------EEDLQNVIVHTALMEMYVKCRAID 357

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           EAR  FD++P            +R++V+W++MI  Y++ G    + E+FE+M   +    
Sbjct: 358 EARHEFDRMP------------RRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPN 405

Query: 237 NTMISGYIHVLDM-------EEASNLFVKMPHPDT-LTWNAMVSGYAQIGNLELALDFFK 288
              + G +            E+  N       P T    +A++  Y + G++  A   F 
Sbjct: 406 EVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFN 465

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDL 346
           RM QK +V+WNSMI G   N   E AI L+ +M  +G +P+  TF ++L+  +  G+VD 
Sbjct: 466 RMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDK 525

Query: 347 HLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
            +         + V P V     ++ +  + G + EA     +M++  N V W+ ++  C
Sbjct: 526 GIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSAC 585

Query: 407 ASHG 410
            +H 
Sbjct: 586 RAHA 589


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 192/636 (30%), Positives = 322/636 (50%), Gaps = 84/636 (13%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS----------------SRGSG----- 43
           Y +   +  A +LFDEMP+RDVV+W  +ISG +                 S G G     
Sbjct: 155 YARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPN 214

Query: 44  --FLEEARYLFDIMPERDCVTW-----------------NTVISGYAKTGEMEEALRLFN 84
              +E       ++ E    T                  +++ S Y K    E+A  LF 
Sbjct: 215 SRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFP 274

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGL-----IQN 135
            +P +++VSW ++I  + + G    A+E F  M       D   +S L++GL     ++ 
Sbjct: 275 ELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRG 334

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           G+   AA V    G       D V   N LI  Y +  +V+ A  +F  +          
Sbjct: 335 GKTFHAAIVRRNFG-------DSVLIGNALISMYAKCKQVDIAATVFRML---------- 377

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML--ERDTFSWNT-------MISGYIHV 246
              +R+  SW+SM++ Y KAG  +   E++ +M   ++D F ++T            +  
Sbjct: 378 --HQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGR 435

Query: 247 LDMEEASNLFV--KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           L + ++++ +    +   ++   NA++S Y + GN ++A   F  +  K++V+W+++I+ 
Sbjct: 436 LRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISS 495

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-D 363
                  + A+ L+ QM  EG KP+  T  S++S  + +  L  G  IH  V    +  D
Sbjct: 496 YSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECD 555

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           + I  AL+ MY +CG +  AR +F+ M L ++VV+WN MI G   HG A +AL+LF  M 
Sbjct: 556 LSICTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGEAIQALKLFSMME 614

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
              V P  +TF+++LSAC HAGLV++GR+ F  M  EY +EP ++H+A +VD++G+ G L
Sbjct: 615 RGNVKPNSLTFLAILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHL 673

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
           ++A D++  MP EPD  +WG LLGAC++H+N E+    A+     +PEN   Y+L+ N Y
Sbjct: 674 QEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSY 733

Query: 544 ADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFSPCG 579
               +W++  ++R +MK++ ++K  G+S +D   CG
Sbjct: 734 GSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDI--CG 767



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 118/533 (22%), Positives = 219/533 (41%), Gaps = 76/533 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           + S Y K      AR LF E+P++D+VSW  +I  Y     +G  E+A  LF  M E   
Sbjct: 256 LFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCR---AGHAEKAVELFLGMEESGL 312

Query: 59  -------------------------------------DCVTWNTVISGYAKTGEMEEALR 81
                                                  +  N +IS YAK  +++ A  
Sbjct: 313 QPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAAT 372

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS-GLIQNGELDE 140
           +F  +  R+  SW++M+  + + G     +E +  M  RD        +  +        
Sbjct: 373 VFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSR 432

Query: 141 AARVLVKCGSRCDGGEDLV----RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
             R+ +   + C   + L        N LI  YG+ G  + ARK+F  +           
Sbjct: 433 LGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKT--------- 483

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEA 252
              +++V+W+++I  Y+  G    A  +++QML      ++ +  ++IS   ++  +E  
Sbjct: 484 ---KDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHG 540

Query: 253 SNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             +   +       D     A+V  Y + G L +A   F  M ++++V+WN MI+G   +
Sbjct: 541 ELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMH 600

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIH-QMVTKTVIPDVP 365
            +   A+KLF  M+    KP+  TF +ILS    +G+VD   G ++  +M   ++ P++ 
Sbjct: 601 GEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVD--KGRELFTRMEEYSLEPNLK 658

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
               ++ +  + G + EA  +   M +  +   W  ++G C  H      L + K  ++F
Sbjct: 659 HYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAK--KAF 716

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
              P    +  ++S    +       +  + M+  +G+E  I    S +DI G
Sbjct: 717 ASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGW--STIDICG 767



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 168/387 (43%), Gaps = 53/387 (13%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PG 119
           ++S Y+  G    A   F + P  +   WN+++    +  D A+ +    RM      P 
Sbjct: 47  LVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPS 106

Query: 120 RDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           R +A L A  S   + G L   A V    V+ G     G+  V   ++L+  Y + G V 
Sbjct: 107 RFTAPLVA--SAAAELGALPVGAAVHAYSVRFGLL--EGDGSVAVASSLVYMYARCGSVR 162

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI---MCYAKAGDVVS------------- 220
           +A +LFD++P            +R++V+W ++I   +C  + G+ +S             
Sbjct: 163 DAVRLFDEMP------------ERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGG 210

Query: 221 AR---EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQI 277
           AR      E  LE         +   +H   ++        + H  ++  +++ S Y + 
Sbjct: 211 ARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAG------VGHCPSVV-SSLFSMYTKC 263

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
            + E A   F  +P+K+LVSW S+I         E A++LF+ M+  G +PD    S +L
Sbjct: 264 DSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLL 323

Query: 338 SMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
           +       +  G   H  + +    D V I NALI+MYA+C  +  A  +F  M   ++ 
Sbjct: 324 AGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVF-RMLHQRDT 382

Query: 397 VSWNAMIGGCASHGFATEALELFKSMR 423
            SW++M+      G   + LEL++ M+
Sbjct: 383 DSWSSMVVAYCKAGLDLKCLELYREMQ 409



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 26/289 (8%)

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
           P PD      +VS Y+  G   LA   F   P  +   WNS++       D+   +    
Sbjct: 39  PRPDFAA--KLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASDFASTLSAHR 96

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD----VPINNALITMYA 375
           +M+  G +P R T   + S ++ +  L +G  +H    +  + +    V + ++L+ MYA
Sbjct: 97  RMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYA 156

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE-LFKSMRSF---KVLPTY 431
           RCG++ +A  +F+EM   ++VV+W A+I GC  +G   E L  L + +RS       P  
Sbjct: 157 RCGSVRDAVRLFDEMP-ERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNS 215

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH----FASLVDIVGRHGRLEDAM 487
            T  S L AC   G +  G     + ++ +G++  + H     +SL  +  +    EDA 
Sbjct: 216 RTMESGLEACGVLGELSVG-----TCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDAR 270

Query: 488 DLIKGMPFEPDKAVWGALLGA-CRVHNNVELAQVAAEALMKVEPENSTP 535
            L   +P E D   W +L+GA CR  +    A+ A E  + +E     P
Sbjct: 271 ILFPELP-EKDLVSWTSLIGAYCRAGH----AEKAVELFLGMEESGLQP 314


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 173/514 (33%), Positives = 277/514 (53%), Gaps = 59/514 (11%)

Query: 74  GEMEEALRLFN---SMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSAS 124
           G +  ++ +FN   S P  N+ ++NA++  F Q+      I +F+        P  D  +
Sbjct: 72  GNLRHSVLIFNHFLSFP--NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYT 129

Query: 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK 184
            ++++       ++ E  +V                  +  +  YG              
Sbjct: 130 FTSVLKACAGLAQVLEGQKV------------------HCFVTKYG-------------- 157

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI 244
               C+          N+   NS++  Y K G    A+++F++M+ RD  SWNT+ISGY 
Sbjct: 158 ----CES---------NLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYC 204

Query: 245 HVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
               +++A  +F  M   + ++W+ M+SGYA++GNLE A   F+ MP +N+VSWN+MIAG
Sbjct: 205 FSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAG 264

Query: 305 CETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP- 362
              N+ Y  AI+LF QMQ EG   P+  T  S+LS  + +  L LG  IH+ + +  I  
Sbjct: 265 YAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEV 324

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
            + + NAL  MYA+CG ++EA+ +F EM   ++V+SW+ +I G A +G+A EA   F  M
Sbjct: 325 GLFLGNALADMYAKCGCVLEAKGVFHEMHE-RDVISWSIIIMGLAMYGYANEAFNFFAEM 383

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
               + P  I+F+ +L+AC HAGLV++G ++F  M   YGI P+IEH+  +VD++ R GR
Sbjct: 384 IEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGR 443

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           L+ A  LI  MP +P+  VWGALLG CR++ + E  +     +++++  +S   V L N+
Sbjct: 444 LDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANV 503

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           YA +GR DDA   RL M+ N   K  G SW++ +
Sbjct: 504 YASMGRLDDAASCRLRMRDNKSMKTPGCSWIEIN 537



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 165/314 (52%), Gaps = 32/314 (10%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           A+KLFDEM  RDVVSWN +ISGY     SG +++AR +FD M E++ V+W+T+ISGYA+ 
Sbjct: 181 AQKLFDEMVVRDVVSWNTLISGYC---FSGMVDKARMVFDGMMEKNLVSWSTMISGYARV 237

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSAL 128
           G +EEA +LF +MP RNVVSWNAMI+G+ QN   A+AIE F +M        +  +L ++
Sbjct: 238 GNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSV 297

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
           +S     G LD      +    R +  E  +   N L   Y + G V EA+ +F ++   
Sbjct: 298 LSACAHLGALDLGK--WIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEM--- 352

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYI 244
                     +R+++SW+ +IM  A  G    A   F +M    LE +  S+  +++   
Sbjct: 353 ---------HERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACT 403

Query: 245 HVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSW 298
           H   +++    F  MP      P    +  +V   ++ G L+ A      MP Q N++ W
Sbjct: 404 HAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVW 463

Query: 299 NSMIAGCETNKDYE 312
            +++ GC   KD E
Sbjct: 464 GALLGGCRIYKDAE 477



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 177/369 (47%), Gaps = 39/369 (10%)

Query: 56  PERDCVTWNTVISGYAKTGEMEEALRLFNSMPA----RNVVSWNAMISGFLQNGDVANAI 111
           P  D  T+ +V+   A   ++ E  ++   +       N+   N+++  + + G    A 
Sbjct: 123 PNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQ 182

Query: 112 EFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG-GEDLVRAYNTLIVGYG 170
           + FD M  RD  S + L+SG   +G +D+A  V        DG  E  + +++T+I GY 
Sbjct: 183 KLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVF-------DGMMEKNLVSWSTMISGYA 235

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
           + G +EEAR+LF+ +P+            RN+VSWN+MI  YA+      A E+F QM  
Sbjct: 236 RVGNLEEARQLFENMPM------------RNVVSWNAMIAGYAQNEKYADAIELFRQMQH 283

Query: 231 RDTFSWN--TMIS-----GYIHVLDMEEASNLFVKMPHPDT--LTWNAMVSGYAQIGNLE 281
               + N  T++S      ++  LD+ +  + F++    +      NA+   YA+ G + 
Sbjct: 284 EGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVL 343

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A   F  M +++++SW+ +I G         A   F +M  +G +P+  +F  +L+  +
Sbjct: 344 EAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACT 403

Query: 342 --GIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
             G+VD   G++   M+ +   + P +     ++ + +R G + +A  +   M +  NV+
Sbjct: 404 HAGLVD--KGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVI 461

Query: 398 SWNAMIGGC 406
            W A++GGC
Sbjct: 462 VWGALLGGC 470



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 104/481 (21%), Positives = 185/481 (38%), Gaps = 89/481 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           MISGY +   + +AR+LF+ MP R+VVSWN MI+GY  +       +A  LF  M     
Sbjct: 230 MISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYA---DAIELFRQMQHEGG 286

Query: 59  ---------------------DCVTW-----------------NTVISGYAKTGEMEEAL 80
                                D   W                 N +   YAK G + EA 
Sbjct: 287 LAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAK 346

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRDSASLS--ALVSGLIQNG 136
            +F+ M  R+V+SW+ +I G    G    A  FF  M   G +   +S   L++     G
Sbjct: 347 GVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAG 406

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            +D+          +  G    +  Y  ++    + GR+++A  L + +P+         
Sbjct: 407 LVDKGLEYF-DMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPM--------- 456

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI---SGYIHVLDMEEAS 253
             + N++ W +++       D      +  ++LE D+    +++   + Y  +  +++A+
Sbjct: 457 --QPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAA 514

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFF---KRMPQK-------NLVSWNSMIA 303
           +  ++M   D  +       + +I N     +FF      PQ          + W   +A
Sbjct: 515 SCRLRM--RDNKSMKTPGCSWIEINN--SVYEFFMGDSSHPQSLRIYSMIRELKWKMKVA 570

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDR-HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP 362
           G      Y+    L I    E EK D   T S  L+++ G+++   G  I  +    V  
Sbjct: 571 G------YKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCN 624

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMK------LLKNVVSWNAMIGGCASHGFATEAL 416
           D      +I+       +V  R  F   K      L+K++ S N  +    S  +A + +
Sbjct: 625 DCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSWLVKSLFSSNEKLAESESIPYAPKGI 684

Query: 417 E 417
           +
Sbjct: 685 D 685


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 182/537 (33%), Positives = 299/537 (55%), Gaps = 41/537 (7%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D     +++  Y KT  +E+  R+F+ M  +NVVSW ++++G+ QNG    A++ F +M 
Sbjct: 126 DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQ 185

Query: 119 ----GRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
                 +  + +A++ GL  +G +++  +V   ++K      G +  +   N+++  Y +
Sbjct: 186 LEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIK-----SGLDSTIFVGNSMVNMYSK 240

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--- 228
              V +A+ +FD +              RN VSWNSMI  +   G  + A E+F +M   
Sbjct: 241 SLMVSDAKAVFDSME------------NRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLE 288

Query: 229 ---LERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLE 281
              L +  F+  T+I    ++ +M  A  L  ++       D     A++  Y++   ++
Sbjct: 289 GVKLTQTIFA--TVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEID 346

Query: 282 LALDFFKRMPQ-KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE-GEKPDRHTFSSILSM 339
            A   F  M   +N+VSW ++I+G   N   + A+ LF QM+ E G +P+  TFSS+L+ 
Sbjct: 347 DAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNA 406

Query: 340 SSG-IVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
            +     +  G Q H    K+   + + +++AL+TMYA+ G I  A  +F+  ++ +++V
Sbjct: 407 CAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKR-QVDRDLV 465

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWN+MI G A HG   ++L++F+ MRS  +    ITFI V+SAC HAGLV EG+++F  M
Sbjct: 466 SWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLM 525

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517
           V +Y I P +EH++ +VD+  R G LE AMDLI  MPF     +W  LL ACRVH NV+L
Sbjct: 526 VKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQL 585

Query: 518 AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            ++AAE L+ ++P++S  YVLL N+YA  G W +  +VR LM    +KK  GYSW++
Sbjct: 586 GELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIE 642



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 115/463 (24%), Positives = 213/463 (46%), Gaps = 69/463 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y+K   +    ++FDEM  ++VVSW  +++GY   R +G  E+A  LF  M     
Sbjct: 133 LVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGY---RQNGLNEQALKLFSQMQLEGI 189

Query: 57  ERDCVTWNTVISGYAKTGEMEEALR----------------------------------- 81
           + +  T+  V+ G A  G +E+ ++                                   
Sbjct: 190 KPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKA 249

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM---PGRDSASLSALVSGLIQNGEL 138
           +F+SM  RN VSWN+MI+GF+ NG    A E F RM     + + ++ A V  L  N + 
Sbjct: 250 VFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKE 309

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
              A+ L  C    +G +  +     L+V Y +   +++A KLF  +             
Sbjct: 310 MSFAKQL-HCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMM-----------HG 357

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQM-----LERDTFSWNTMISGYIHVLDMEEAS 253
            +N+VSW ++I  Y + G    A  +F QM     +E + F+++++++         E  
Sbjct: 358 VQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQG 417

Query: 254 NLF----VKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             F    +K    + L   +A+V+ YA+ GN+E A + FKR   ++LVSWNSMI+G   +
Sbjct: 418 KQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQH 477

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPI 366
              + ++K+F +M+ +  + D  TF  ++S  +    ++ G +   ++ K   ++P +  
Sbjct: 478 GCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEH 537

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            + ++ +Y+R G + +A  +  +M        W  ++  C  H
Sbjct: 538 YSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVH 580



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 174/377 (46%), Gaps = 49/377 (12%)

Query: 181 LFDKI---PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           LFD+I    V+C   +    F  ++    S++  Y K   V     +F++M  ++  SW 
Sbjct: 105 LFDRIVGKQVHCQCIKCG--FVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWT 162

Query: 238 TMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALD-------- 285
           ++++GY      E+A  LF +M      P+  T+ A++ G A  G +E  +         
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS 222

Query: 286 ---------------------------FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
                                       F  M  +N VSWNSMIAG  TN     A +LF
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELF 282

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARC 377
            +M++EG K  +  F++++ + + I ++    Q+H Q++      D+ I  AL+  Y++C
Sbjct: 283 YRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKC 342

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK-VLPTYITFIS 436
             I +A  +F  M  ++NVVSW A+I G   +G    A+ LF  MR  + V P   TF S
Sbjct: 343 SEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSS 402

Query: 437 VLSACAH-AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           VL+ACA     VE+G+Q F S   + G    +   ++LV +  + G +E A ++ K    
Sbjct: 403 VLNACAAPTASVEQGKQ-FHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFK-RQV 460

Query: 496 EPDKAVWGALLGACRVH 512
           + D   W +++     H
Sbjct: 461 DRDLVSWNSMISGYAQH 477



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 123/246 (50%), Gaps = 7/246 (2%)

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F   PQ+ L   N ++     N   + A+ LF+ ++  G   D  + S +L +   + D
Sbjct: 48  LFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFD 107

Query: 346 LHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
             +G Q+H Q +    + DV +  +L+ MY +  ++ +   +F+EM+ +KNVVSW +++ 
Sbjct: 108 RIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMR-VKNVVSWTSLLA 166

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           G   +G   +AL+LF  M+   + P   TF +VL   A  G VE+G Q   +MV + G++
Sbjct: 167 GYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSGLD 225

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV-WGALLGACRVHNNVELAQVAAE 523
             I    S+V++  +   + DA  +   M  E   AV W +++ A  V N ++L      
Sbjct: 226 STIFVGNSMVNMYSKSLMVSDAKAVFDSM--ENRNAVSWNSMI-AGFVTNGLDLEAFELF 282

Query: 524 ALMKVE 529
             M++E
Sbjct: 283 YRMRLE 288



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 23/220 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +++ Y KR  +  A ++F     RD+VSWN MISGY +  G G  +++  +F+ M     
Sbjct: 439 LVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGY-AQHGCG--KKSLKIFEEMRSKNL 495

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
           E D +T+  VIS     G + E  R F+ M         +  ++ M+  + + G +  A+
Sbjct: 496 ELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAM 555

Query: 112 EFFDRMPGRDSASL------SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTL 165
           +  ++MP    A++      +  V   +Q GEL  AA  L+    +      L+      
Sbjct: 556 DLINKMPFPAGATIWRTLLAACRVHLNVQLGEL--AAEKLISLQPQDSAAYVLLSNIYAT 613

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
              + +R +V   RKL D   V  + G   +  K    S+
Sbjct: 614 AGNWQERAKV---RKLMDMKKVKKEAGYSWIEVKNKTFSF 650


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 160/415 (38%), Positives = 246/415 (59%), Gaps = 10/415 (2%)

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           +N++I  Y +  +  EA +++      C   +G +  +R++     ++  Y+K GD+  A
Sbjct: 117 WNSMIRAYTRSKQYNEALEMY-----YCMVEKGGL--ERDVFIGAGLVDMYSKMGDLKRA 169

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           RE+F++M +RD  +WN MI+G     D   A  +F +M   D ++W  M++GYA  G   
Sbjct: 170 REVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFV 229

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
             L+ F +M   N V+WN +IA    N   + AI  F QM++E   P+  TF S+L  ++
Sbjct: 230 EVLELFDKMKLGN-VTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAA 288

Query: 342 GIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +     GM  H  + +   + +  + N+LI MYA+CG +  +  +F EM   K+ VSWN
Sbjct: 289 YLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDH-KDTVSWN 347

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           AM+ G A HG    A+ LF  M+  +V    ++F+SVLSAC HAGLVEEGR+ F SM ++
Sbjct: 348 AMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDK 407

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           Y I+P +EH+A +VD++GR G  ++ +  IK MP EPD  VWGALLG+CR+H+NV+L +V
Sbjct: 408 YHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEV 467

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           A + L+K+EP N   +V+L ++YA  GRW DA + R  M    +KK  G SWV+ 
Sbjct: 468 ALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVEL 522



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 171/378 (45%), Gaps = 34/378 (8%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPA-----RNVVSWNAMISGFL 102
           AR +FD  P    + WN++I  Y ++ +  EAL ++  M       R+V     ++  + 
Sbjct: 102 ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYS 161

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
           + GD+  A E FD+MP RD  + +A+++GL Q+ +   A RV  +   + D       ++
Sbjct: 162 KMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDD------VSW 215

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
            T++ GY   G   E  +LFDK+ +      GN       V+WN +I  Y + G    A 
Sbjct: 216 GTMMAGYAHNGCFVEVLELFDKMKL------GN-------VTWNVIIAAYMQNGHAKEAI 262

Query: 223 EIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGY 274
             F QM       ++ ++ +++    ++    E       +       +TL  N+++  Y
Sbjct: 263 SSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMY 322

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
           A+ G L+ +   F  M  K+ VSWN+M++G   +   + AI LF  MQ    + D  +F 
Sbjct: 323 AKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFV 382

Query: 335 SILSMSSGIVDLHLGMQI-HQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKL 392
           S+LS       +  G +I H M  K  I PD+     ++ +  R G   E     + M +
Sbjct: 383 SVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPV 442

Query: 393 LKNVVSWNAMIGGCASHG 410
             +   W A++G C  H 
Sbjct: 443 EPDAGVWGALLGSCRMHS 460



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 178/416 (42%), Gaps = 64/416 (15%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP-----ERDCVTWNTVIS 68
           AR +FD  P    + WN MI  Y  S+      EA  ++  M      ERD      ++ 
Sbjct: 102 ARSVFDSTPNPSRILWNSMIRAYTRSKQ---YNEALEMYYCMVEKGGLERDVFIGAGLVD 158

Query: 69  GYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSAL 128
            Y+K G+++ A  +F+ MP R+VV+WNAMI+G  Q+ D   A   FD+M  +D  S   +
Sbjct: 159 MYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTM 218

Query: 129 VSGLIQNGELDEAARVL--VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
           ++G   NG   E   +   +K G+           +N +I  Y Q G  +EA   F ++ 
Sbjct: 219 MAGYAHNGCFVEVLELFDKMKLGN---------VTWNVIIAAYMQNGHAKEAISSFHQMR 269

Query: 187 VN-------------------CDRGEG--------NVRFKRNIVSWNSMIMCYAKAGDVV 219
           +                        EG         + F  N +  NS+I  YAK G + 
Sbjct: 270 LENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLD 329

Query: 220 SAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP----DTLTWNAMVSGYA 275
            + ++F +M  +DT SWN M+SGY      + A  LF  M       D++++ +++S   
Sbjct: 330 YSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACR 389

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ----MQVEGEKPDRH 331
             G +E     F  M  K  +  +     C    D  G   LF +    ++V   +PD  
Sbjct: 390 HAGLVEEGRKIFHSMSDKYHIKPDLEHYACMV--DLLGRAGLFDETLGFIKVMPVEPDAG 447

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA----LITMYARCGAIVEA 383
            + ++L    G   +H  +++ ++    ++   P N A    L ++YA+ G   +A
Sbjct: 448 VWGALL----GSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADA 499



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 127/293 (43%), Gaps = 46/293 (15%)

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +++ Y+     +LA   F   P  + + WNSMI     +K Y  A++++  M VE    +
Sbjct: 89  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCM-VEKGGLE 147

Query: 330 RHTFSSILSMSSGIVDLHLGM----QIHQMVTKTVIPDVPINNALI-------------- 371
           R  F     + +G+VD++  M    +  ++  K    DV   NA+I              
Sbjct: 148 RDVF-----IGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARR 202

Query: 372 --------------TM---YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
                         TM   YA  G  VE   +F++MKL    V+WN +I     +G A E
Sbjct: 203 VFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL--GNVTWNVIIAAYMQNGHAKE 260

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           A+  F  MR     P  +TF+SVL A A+     EG   F + + + G         SL+
Sbjct: 261 AISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLI 319

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
           D+  + G+L+ +  L   M  + D   W A+L    VH + + A +A  +LM+
Sbjct: 320 DMYAKCGQLDYSEKLFNEMDHK-DTVSWNAMLSGYAVHGHGDRA-IALFSLMQ 370



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 22/198 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I  Y K  ++  + KLF+EM  +D VSWN M+SGY +  G G  + A  LF +M E   
Sbjct: 318 LIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGY-AVHGHG--DRAIALFSLMQESQV 374

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
             D V++ +V+S     G +EE  ++F+SM  +     ++  +  M+    + G     +
Sbjct: 375 QIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETL 434

Query: 112 EFFDRMPGRDSASLSALVSG---LIQNGELDEAA-RVLVKCGSRCDGGEDLVRAYNTLIV 167
            F   MP    A +   + G   +  N +L E A   LVK   R          +  L  
Sbjct: 435 GFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPA------HFVVLSS 488

Query: 168 GYGQRGRVEEARKLFDKI 185
            Y Q GR  +A K   K+
Sbjct: 489 IYAQSGRWADAGKARSKM 506


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 161/419 (38%), Positives = 251/419 (59%), Gaps = 19/419 (4%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N LI  Y + G + +A+ +FDK+P             RN+VSW +MI  Y+ A     A 
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMP------------DRNVVSWTTMISAYSAAKLNDKAL 51

Query: 223 EIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMP-HPDTLTWNAMVSGYAQI 277
           E    ML      + F++++++     + ++ +     +K+    D    +A++  Y++ 
Sbjct: 52  EFLVLMLREGVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRW 111

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
           G LE AL  F  M   +LV W+S+IAG   N D + A++LF +M+  G    + T +S+L
Sbjct: 112 GELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVL 171

Query: 338 SMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
              +G+  L LG Q+H  V K    D+ +NNAL+ MY +CG++ +A  +F  M + K+V+
Sbjct: 172 RACTGLALLELGRQVHVHVLKYD-QDLILNNALLDMYCKCGSLEDANAVFVRM-VEKDVI 229

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SW+ MI G A +G++ EAL+LF+SM+   + P Y+T + VL AC+HAGLVEEG  +F SM
Sbjct: 230 SWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSM 289

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517
              +GI+P  EH+  ++D++GR GRL +A+DLI  M  EPD   W ALL ACRVH NV++
Sbjct: 290 KELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDV 349

Query: 518 AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           A  AA+ +++++P+++  YVLL N+YA+  RW+D  EVR  M +  IKK  G SW++ S
Sbjct: 350 AIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVS 408



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 166/359 (46%), Gaps = 31/359 (8%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR--- 120
           N +I+ Y K G + +A  +F+ MP RNVVSW  MIS +        A+EF   M      
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63

Query: 121 -DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            +  + S+++        L +    ++K G   D     V   + LI  Y + G +E A 
Sbjct: 64  PNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSD-----VFVRSALIDVYSRWGELENAL 118

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           ++FD++               ++V W+S+I  +A+  D   A  +F++M      +  T 
Sbjct: 119 RVFDEMVTG------------DLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTT 166

Query: 240 ISGYIH------VLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           ++  +       +L++    ++ V     D +  NA++  Y + G+LE A   F RM +K
Sbjct: 167 LTSVLRACTGLALLELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEK 226

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQ 351
           +++SW++MIAG   N   + A+KLF  M+V G KP+  T   +L   S  G+V+  L   
Sbjct: 227 DVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGL-YY 285

Query: 352 IHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            H M     I P       +I +  R G + EA  +  EM+   + V+W A++  C  H
Sbjct: 286 FHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVH 344



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 129/276 (46%), Gaps = 40/276 (14%)

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           F  N +I+ Y+    + +A ++F KMP  + ++W  M+S Y+                  
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYS------------------ 42

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
                          K  + A++  + M  EG +P+  T+SS+L    G+ +L    Q+H
Sbjct: 43  -------------AAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACDGLFNLR---QLH 86

Query: 354 QMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
             + K  +  DV + +ALI +Y+R G +  A  +F+EM +  ++V W+++I G A +   
Sbjct: 87  CCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEM-VTGDLVVWSSIIAGFAQNSDG 145

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
            EAL LFK M+    L    T  SVL AC    L+E GRQ     V +Y  +  + +  +
Sbjct: 146 DEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQ-VHVHVLKYDQDLILNN--A 202

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           L+D+  + G LEDA  +   M  E D   W  ++  
Sbjct: 203 LLDMYCKCGSLEDANAVFVRM-VEKDVISWSTMIAG 237



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 159/362 (43%), Gaps = 63/362 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSR-------------------- 40
           +I+ YVK   +  A+ +FD+MP R+VVSW  MIS Y +++                    
Sbjct: 6   LINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPN 65

Query: 41  ---GSGFLEEARYLFDIMPERDCV----------TWNTVISGYAKTGEMEEALRLFNSMP 87
               S  L     LF++     C+            + +I  Y++ GE+E ALR+F+ M 
Sbjct: 66  MFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMV 125

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDEAAR 143
             ++V W+++I+GF QN D   A+  F RM          +L++++        L+   +
Sbjct: 126 TGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQ 185

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
           V V         +DL+   N L+  Y + G +E+A  +F ++             +++++
Sbjct: 186 VHVHV---LKYDQDLI-LNNALLDMYCKCGSLEDANAVFVRM------------VEKDVI 229

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
           SW++MI   A+ G    A ++FE M    ++ +  +   ++    H   +EE    F  M
Sbjct: 230 SWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSM 289

Query: 260 PH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEG 313
                  P    +  M+    + G L  A+D    M  + + V+W +++  C  +++ + 
Sbjct: 290 KELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDV 349

Query: 314 AI 315
           AI
Sbjct: 350 AI 351



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 117/264 (44%), Gaps = 34/264 (12%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G LE A  +FD M   D V W+++I+G+A+  + +EALRLF  M     ++    ++  L
Sbjct: 112 GELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVL 171

Query: 103 QNGDVANAIEFFDRMPGRD-SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR- 160
           +       +E      GR     +      LI N  L +   +  KCGS  D     VR 
Sbjct: 172 RACTGLALLEL-----GRQVHVHVLKYDQDLILNNALLD---MYCKCGSLEDANAVFVRM 223

Query: 161 ------AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
                 +++T+I G  Q G  +EA KLF+ + V        +  K N V+   ++   + 
Sbjct: 224 VEKDVISWSTMIAGLAQNGYSKEALKLFESMKV--------LGIKPNYVTIVGVLFACSH 275

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD-------MEEASNLFVKMP-HPDTLT 266
           AG V      F  M  ++ F  +     Y  ++D       + EA +L  +M   PD +T
Sbjct: 276 AGLVEEGLYYFHSM--KELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVT 333

Query: 267 WNAMVSGYAQIGNLELALDFFKRM 290
           W A+++      N+++A+   K++
Sbjct: 334 WRALLNACRVHRNVDVAIHAAKQI 357


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 185/552 (33%), Positives = 302/552 (54%), Gaps = 42/552 (7%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL-- 102
           L  A  +F  + E + ++WNT+I G+A + +   AL L+  M +  + S N+    FL  
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGL-SPNSYTFPFLFK 86

Query: 103 --------QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
                   Q G   +A +        D    ++L+S   QNG +++A +V      R   
Sbjct: 87  SCAKSKAAQEGKQIHA-QILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHR--- 142

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
             D+V +Y  +I GY  RG +++A+K+FD+IP+            +++VSWN+MI  YA+
Sbjct: 143 --DVV-SYTAMITGYASRGNMDKAQKMFDEIPI------------KDVVSWNAMISGYAE 187

Query: 215 AGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT 266
            G    A E+F +M++ D      +  T++S   H  ++E    +   + +     +   
Sbjct: 188 IGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKL 247

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
            NA++  Y++ G +E A   F+ +  K+++SWN++I G      ++ A+ +F +M   GE
Sbjct: 248 VNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGE 307

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT---VIPDVPINNALITMYARCGAIVEA 383
            P+  T  SIL   + +  + +G  IH  + K    +I +  +  +LI MYA+CG I  A
Sbjct: 308 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAA 367

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
             +F+ + L K++ S NAMI G A HG A  A +L   M+   + P  ITF+ +LSAC+H
Sbjct: 368 NQVFDTI-LNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSH 426

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           AGL + GR+ FKSM  +Y IEP++EH+  ++D++GR G  ++A +LI  M  EPD  +WG
Sbjct: 427 AGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWG 486

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
           +LL AC++H N+EL ++ A+ LMK+EP+N   YVLL N+YA   RWDD   VR L+    
Sbjct: 487 SLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKG 546

Query: 564 IKKPTGYSWVDF 575
           +KK  G S ++ 
Sbjct: 547 LKKVPGCSSIEI 558



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 192/386 (49%), Gaps = 34/386 (8%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G +E+A  +FD    RD V++  +I+GYA  G M++A ++F+ +P ++VVSWNAMISG+
Sbjct: 126 NGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGY 185

Query: 102 LQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGED 157
            + G    A+E F+ M       D ++++ ++S    +G ++   ++     +   G   
Sbjct: 186 AEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSN- 244

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
            ++  N LI  Y + G +E A  LF+ +              ++++SWN++I  YA    
Sbjct: 245 -LKLVNALIDLYSKCGEMERAHGLFEGLQY------------KDVISWNTLIGGYAYINH 291

Query: 218 VVSAREIFEQMLER-DTFSWNTMIS-----GYIHVLDMEEASNLFVKMPHPDTLT----W 267
              A  +F++ML+  +T +  TM+S      ++  +D+    ++++       +T     
Sbjct: 292 HKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQ 351

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
            +++  YA+ GN+E A   F  +  K+L S N+MI G   +   + A  L  +M+ +G +
Sbjct: 352 TSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIE 411

Query: 328 PDRHTFSSILSMSS--GIVDLHLGMQIHQMVT--KTVIPDVPINNALITMYARCGAIVEA 383
           PD  TF  +LS  S  G+ D  LG +I + +T    + P +     +I +  R G   EA
Sbjct: 412 PDDITFVGLLSACSHAGLSD--LGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEA 469

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASH 409
             +   M +  + V W +++  C  H
Sbjct: 470 EELINSMTMEPDGVIWGSLLKACKIH 495



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 164/396 (41%), Gaps = 69/396 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           MI+GY  R  M KA+K+FDE+P +DVVSWN MISGY      G  +EA  LF      D+
Sbjct: 150 MITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAE---IGRYKEALELFNEMMKMDV 206

Query: 55  MPE--------------------RDCVTW-------------NTVISGYAKTGEMEEALR 81
            P+                    R   +W             N +I  Y+K GEME A  
Sbjct: 207 KPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHG 266

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGE 137
           LF  +  ++V+SWN +I G+        A+  F  M       +  ++ +++      G 
Sbjct: 267 LFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGA 326

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           +D    + V    +  G         +LI  Y + G +E A ++FD I            
Sbjct: 327 IDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTI------------ 374

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
             +++ S N+MI  +A  G   +A ++  +M    +E D  ++  ++S   H    +   
Sbjct: 375 LNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGR 434

Query: 254 NLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCET 307
            +F  M       P    +  M+    + G  + A +    M  + + V W S++  C+ 
Sbjct: 435 KIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKI 494

Query: 308 NKDYE-GAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           +K+ E G +     M++E + P  +   S +  +S 
Sbjct: 495 HKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSA 530


>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
 gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
          Length = 564

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 172/472 (36%), Positives = 268/472 (56%), Gaps = 30/472 (6%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR--- 120
            +++  Y + G + EA R+F+ MP R+V +WNAM+SG  +N    +A+  F RM G    
Sbjct: 106 GSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMVGEGVA 165

Query: 121 -DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            D+ +LS+++   +  G+   A  + V    R   GE  V   N LI  YG+ G + EAR
Sbjct: 166 GDAVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFV--CNALIDVYGKLGMLVEAR 223

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFS 235
            +F  + +            R++V+WNS+I  Y + G V +A E+F  M++     D  +
Sbjct: 224 WVFGGMAL------------RDLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLT 271

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
             ++ S      D   A ++   +        D +  NA+V  YA++  ++ A   F  +
Sbjct: 272 LVSLASAVAQCGDERGAKSVHCYVRRRGWDVGDIIAGNAVVDMYAKLSKIDAAQMVFDNL 331

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ-VEGEKPDRHTFSSILSMSSGIVDLHLG 349
           P +++VSWN++I G   N     A++++  MQ  EG KP + TF SIL   S +  L  G
Sbjct: 332 PDRDVVSWNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQG 391

Query: 350 MQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           M++H +  KT +  DV ++  LI +YA+CG +VEA ++FE M   ++   WNA+I G   
Sbjct: 392 MRMHALSIKTGLNLDVYVSTCLIDLYAKCGKLVEAMLLFEHMPR-RSTGPWNAIIAGLGV 450

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           HG   +AL LF  M+   + P  +TF+S+L+AC+HAGLV++GR  F  M   YGI P  +
Sbjct: 451 HGHGAKALNLFSQMQQEGIKPDNVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAK 510

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           H+A +VD++GR G+L++A + I+GMP +PD AVWGALLGACR+H NVELA +
Sbjct: 511 HYACMVDMLGRAGQLDEAFEFIQGMPIKPDSAVWGALLGACRIHGNVELAAI 562



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 131/473 (27%), Positives = 213/473 (45%), Gaps = 88/473 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSR-------------GSGFLEE 47
           ++  Y++   +A+A ++FDEMP+RDV +WN M+SG   +              G G   +
Sbjct: 108 LVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMVGEGVAGD 167

Query: 48  ARYLFDIMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
           A  L  ++P                         +    N +I  Y K G + EA  +F 
Sbjct: 168 AVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLVEARWVFG 227

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDE 140
            M  R++V+WN++IS + Q G VA A+E F  M       D  +L +L S + Q G  DE
Sbjct: 228 GMALRDLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVAQCG--DE 285

Query: 141 AARVLVKCGSRCDGGE--DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
                V C  R  G +  D++ A N ++  Y +  +++ A+ +FD +P            
Sbjct: 286 RGAKSVHCYVRRRGWDVGDII-AGNAVVDMYAKLSKIDAAQMVFDNLP------------ 332

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-----SWNTMISGY---------- 243
            R++VSWN++I  Y + G    A  I+  M   +       ++ +++  Y          
Sbjct: 333 DRDVVSWNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQGM 392

Query: 244 -IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
            +H L ++   NL       D      ++  YA+ G L  A+  F+ MP+++   WN++I
Sbjct: 393 RMHALSIKTGLNL-------DVYVSTCLIDLYAKCGKLVEAMLLFEHMPRRSTGPWNAII 445

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTV 360
           AG   +     A+ LF QMQ EG KPD  TF S+L+  S  G+VD   G     ++ +TV
Sbjct: 446 AGLGVHGHGAKALNLFSQMQQEGIKPDNVTFVSLLAACSHAGLVD--QGRSFFDLM-QTV 502

Query: 361 IPDVPINN---ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
              VPI      ++ M  R G + EA    + M +  +   W A++G C  HG
Sbjct: 503 YGIVPIAKHYACMVDMLGRAGQLDEAFEFIQGMPIKPDSAVWGALLGACRIHG 555



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 201/420 (47%), Gaps = 37/420 (8%)

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           V A  +L+  Y + GRV EA ++FD++P            +R++ +WN+M+    +    
Sbjct: 102 VFASGSLVHAYLRFGRVAEAYRVFDEMP------------ERDVPAWNAMLSGLCRNARA 149

Query: 219 VSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFV----KMPHPDTLTWNAM 270
           V A  +F +M+      D  + ++++   + + D   A  + V    +    +    NA+
Sbjct: 150 VDAVALFGRMVGEGVAGDAVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNAL 209

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
           +  Y ++G L  A   F  M  ++LV+WNS+I+  E       A++LF  M   G  PD 
Sbjct: 210 IDVYGKLGMLVEARWVFGGMALRDLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDV 269

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTV--IPDVPINNALITMYARCGAIVEARIIFE 388
            T  S+ S  +   D      +H  V +    + D+   NA++ MYA+   I  A+++F+
Sbjct: 270 LTLVSLASAVAQCGDERGAKSVHCYVRRRGWDVGDIIAGNAVVDMYAKLSKIDAAQMVFD 329

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL-PTYITFISVLSACAHAGLV 447
            +   ++VVSWN +I G   +G + EA+ ++  M++ + L P   TF+S+L A ++ G +
Sbjct: 330 NLP-DRDVVSWNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGAL 388

Query: 448 EEG-RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           ++G R H  S+  + G+   +     L+D+  + G+L +AM L + MP       W A++
Sbjct: 389 QQGMRMHALSI--KTGLNLDVYVSTCLIDLYAKCGKLVEAMLLFEHMP-RRSTGPWNAII 445

Query: 507 GACRVHNNVE-----LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
               VH +        +Q+  E    ++P+N T +V L    +  G  D       LM++
Sbjct: 446 AGLGVHGHGAKALNLFSQMQQEG---IKPDNVT-FVSLLAACSHAGLVDQGRSFFDLMQT 501



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 136/278 (48%), Gaps = 15/278 (5%)

Query: 251 EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
            A  L + + HP+     ++V  Y + G +  A   F  MP++++ +WN+M++G   N  
Sbjct: 89  HACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNAR 148

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNA 369
              A+ LF +M  EG   D  T SS+L M   + D  L + +H   V + +  ++ + NA
Sbjct: 149 AVDAVALFGRMVGEGVAGDAVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNA 208

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           LI +Y + G +VEAR +F  M  L+++V+WN++I      G    A+ELF  M    V P
Sbjct: 209 LIDVYGKLGMLVEARWVFGGMA-LRDLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSP 267

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE-PRIEHFASLVDIVGRHGRLEDAMD 488
             +T +S+ SA A  G  E G +     V   G +   I    ++VD+  +  +++ A  
Sbjct: 268 DVLTLVSLASAVAQCG-DERGAKSVHCYVRRRGWDVGDIIAGNAVVDMYAKLSKIDAAQM 326

Query: 489 LIKGMPFEPDKAVWGALLG----------ACRVHNNVE 516
           +   +P + D   W  L+           A R++N+++
Sbjct: 327 VFDNLP-DRDVVSWNTLITGYMQNGLSNEAVRIYNDMQ 363



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 154/370 (41%), Gaps = 78/370 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-------- 52
           +I  Y K   + +AR +F  M  RD+V+WN +IS Y      G +  A  LF        
Sbjct: 209 LIDVYGKLGMLVEARWVFGGMALRDLVTWNSIISAY---EQGGKVAAAVELFHGMMKSGV 265

Query: 53  --DIMP-------------ER-----------------DCVTWNTVISGYAKTGEMEEAL 80
             D++              ER                 D +  N V+  YAK  +++ A 
Sbjct: 266 SPDVLTLVSLASAVAQCGDERGAKSVHCYVRRRGWDVGDIIAGNAVVDMYAKLSKIDAAQ 325

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-----SASLSALVSGLIQN 135
            +F+++P R+VVSWN +I+G++QNG    A+  ++ M   +       +  +++      
Sbjct: 326 MVFDNLPDRDVVSWNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTFVSILPAYSNL 385

Query: 136 GELDEAAR---VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           G L +  R   + +K G   D     V     LI  Y + G++ EA  LF+ +P      
Sbjct: 386 GALQQGMRMHALSIKTGLNLD-----VYVSTCLIDLYAKCGKLVEAMLLFEHMP------ 434

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLD 248
                 +R+   WN++I      G    A  +F QM    ++ D  ++ ++++   H   
Sbjct: 435 ------RRSTGPWNAIIAGLGVHGHGAKALNLFSQMQQEGIKPDNVTFVSLLAACSHAGL 488

Query: 249 MEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMI 302
           +++  + F  M       P    +  MV    + G L+ A +F + MP K +   W +++
Sbjct: 489 VDQGRSFFDLMQTVYGIVPIAKHYACMVDMLGRAGQLDEAFEFIQGMPIKPDSAVWGALL 548

Query: 303 AGCETNKDYE 312
             C  + + E
Sbjct: 549 GACRIHGNVE 558


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 181/527 (34%), Positives = 282/527 (53%), Gaps = 24/527 (4%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
            +D      +I+ ++    +  A+ +FN +P  NV  +N++I     N     ++ F   
Sbjct: 50  HQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNSS-HRSLPF--- 105

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL--VRAYNTLIVGYGQRGR 174
                +A      +GL  +   +     L+K    C G   L  VR  +  +   G  G 
Sbjct: 106 -----NAFFQMQKNGLFPD---NFTYPFLLKA---CSGPSSLPLVRMIHAHVEKIGFYGD 154

Query: 175 VEEARKLFDKIPVNCDRG-EGNVRF-----KRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           +     L D      + G +G +       +R++V+WNSMI    + G++  A ++F++M
Sbjct: 155 IFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEM 214

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
            +RD  SWNTM+ GY    +M+ A  LF +MP  + ++W+ MV GY++ G++++A   F 
Sbjct: 215 PDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFD 274

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
           R P KN+V W ++IAG         A +L+ +M+  G +PD     SIL+  +    L L
Sbjct: 275 RCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGL 334

Query: 349 GMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G +IH  + +        + NA I MYA+CG +  A  +F  M   K+VVSWN+MI G A
Sbjct: 335 GKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFA 394

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
            HG   +ALELF  M      P   TF+ +L AC HAGLV EGR++F SM   YGI P++
Sbjct: 395 MHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQV 454

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
           EH+  ++D++GR G L++A  L++ MP EP+  + G LL ACR+HN+V+LA+   E L K
Sbjct: 455 EHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFK 514

Query: 528 VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +EP +   Y LL N+YA  G W +   VRL MK+   +KP+G S ++
Sbjct: 515 LEPSDPGNYSLLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASSIE 561



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 170/362 (46%), Gaps = 36/362 (9%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           A  LF  M +RDVV+WN MI G +     G L+ A  LFD MP+RD V+WNT++ GYAK 
Sbjct: 176 AMSLFLAMEERDVVTWNSMIGGLVR---CGELQGACKLFDEMPDRDMVSWNTMLDGYAKA 232

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI 133
           GEM+ A  LF  MP RN+VSW+ M+ G+ + GD+  A   FDR P ++    + +++G  
Sbjct: 233 GEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYA 292

Query: 134 QNGELDEAARVLVK---CGSRCDGG---EDLVRAYNTLIVGYGQRGRVEEARKLFDK--- 184
           + G   EA  +  K    G R D G     L     + ++G G+R      R  F     
Sbjct: 293 EKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAK 352

Query: 185 -----IPVNCDRGEGNVRF--------KRNIVSWNSMIMCYAKAGDVVSAREIFEQML-- 229
                I +    G  +  F        K+++VSWNSMI  +A  G    A E+F  M+  
Sbjct: 353 VLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQE 412

Query: 230 --ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLEL 282
             E DT+++  ++    H   + E    F  M       P    +  M+    + G+L+ 
Sbjct: 413 GFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKE 472

Query: 283 ALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMS 340
           A    + MP + N +   +++  C  + D + A  +  Q+ ++E   P  ++  S +   
Sbjct: 473 AFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQ 532

Query: 341 SG 342
           +G
Sbjct: 533 AG 534



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 181/389 (46%), Gaps = 43/389 (11%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+   N +I  Y S  G+  L+ A  LF  M ERD VTWN++I G  + GE++ A +LF+
Sbjct: 154 DIFVPNSLIDSY-SRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFD 212

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            MP R++VSWN M+ G+ + G++  A E F+RMP R+  S S +V G  + G++D A  +
Sbjct: 213 EMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARML 272

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV-------- 196
             +C  +       V  + T+I GY ++G   EA +L+ K+     R +           
Sbjct: 273 FDRCPVKN------VVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAAC 326

Query: 197 -------------------RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML-ERDTFSW 236
                              RF+      N+ I  YAK G + +A ++F  M+ ++D  SW
Sbjct: 327 AESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSW 386

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           N+MI G+      E+A  LF  M      PDT T+  ++      G +     +F  M +
Sbjct: 387 NSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEK 446

Query: 293 KNLVSWNSMIAGCETNKDYEGA--IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
              +       GC  +    G    + F+ ++    +P+     ++L+      D+ L  
Sbjct: 447 VYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLAR 506

Query: 351 QIHQMVTKTVIPDVPINNALIT-MYARCG 378
            + + + K + P  P N +L++ +YA+ G
Sbjct: 507 AVCEQLFK-LEPSDPGNYSLLSNIYAQAG 534



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 38/238 (15%)

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
           ++ +  L +D F    +I+ +     +  A N+F  +PHP+   +N+++  +A   +   
Sbjct: 43  QVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNSS--- 99

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
                + +P                          F QMQ  G  PD  T+  +L   SG
Sbjct: 100 ----HRSLP-----------------------FNAFFQMQKNGLFPDNFTYPFLLKACSG 132

Query: 343 IVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCG--AIVEARIIFEEMKLLKNVVSW 399
              L L   IH  V K     D+ + N+LI  Y+RCG   +  A  +F  M+  ++VV+W
Sbjct: 133 PSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAME-ERDVVTW 191

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           N+MIGG    G    A +LF  M    +    +++ ++L   A AG ++   + F+ M
Sbjct: 192 NSMIGGLVRCGELQGACKLFDEMPDRDM----VSWNTMLDGYAKAGEMDTAFELFERM 245


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 199/651 (30%), Positives = 316/651 (48%), Gaps = 119/651 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR-DVVSWNVMISGY----------------------- 36
           +I  Y K     +AR LF ++  R ++V+WNVMI G+                       
Sbjct: 180 LIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKV 239

Query: 37  --------ISSRGSG-FLEEARYL----FDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
                   +S+ G G F+   + +      +  E D     ++++ Y K   +E A ++F
Sbjct: 240 VSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVF 299

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
           N +P + +  WNA+IS ++ NG   +A+  + +M       L  ++S        D    
Sbjct: 300 NEVPDKEIELWNALISAYVGNGYAYDALRIYKQM------KLCTVLS--------DSFTI 345

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
           + V   S   G  DL R  +T IV                K P+           + +I 
Sbjct: 346 LNVLTSSSMAGLYDLGRLIHTEIV----------------KRPL-----------QSSIT 378

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP--- 260
             ++++  Y+K GD   A  IF  M ERD  +W ++ISG+      +EA + F  M    
Sbjct: 379 IQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADL 438

Query: 261 -HPDTLTWNAMVSG-----------------------------------YAQIGNLELAL 284
             PD+    +++S                                    Y++ G  E A 
Sbjct: 439 VKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAG 498

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
           + F  MP KNLV+WNS+I+    N   + +I LF Q+      PD  +F+S+L+  S + 
Sbjct: 499 NIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVA 558

Query: 345 DLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
            L  G  +H  + +  IP D+ + N LI MY +CG +  A+ IFE +   KN+V+WN+MI
Sbjct: 559 ALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERIS-EKNLVAWNSMI 617

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
           GG  SHG  ++A+ELF  MRS  + P  +TF+S+LS+C H+GL+EEG   F+ M  ++GI
Sbjct: 618 GGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGI 677

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE 523
           EPR+EH+ ++VD+ GR G L DA   +K MP EPD+++W +LL +C++H N+EL ++ A 
Sbjct: 678 EPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELGEMVAN 737

Query: 524 ALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            L+ +EP   + YV L N+Y +   WD    +R  MK   +KK  G SW++
Sbjct: 738 KLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMKEKGLKKTPGCSWIE 788



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 163/629 (25%), Positives = 283/629 (44%), Gaps = 99/629 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR-----DVVSWNVMISGYIS-------------SRGS 42
           +I+ YVK      A K+FD++P+      DV  WN +I GY                + S
Sbjct: 94  LINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSS 153

Query: 43  GFLEEAR---YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-NVVSWNAMI 98
           G+ E  +   Y+   M   D      +I  Y K G   EA  LF  +  R N+V+WN MI
Sbjct: 154 GYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMI 213

Query: 99  SGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
            GF +NG   N++E++      +    S+S +  +S   Q GE     +  V C +   G
Sbjct: 214 GGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQ-GEFVSFGKQ-VHCDAIKVG 271

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
            ED    + +L+  YG+   +E A K+F+++P             + I  WN++I  Y  
Sbjct: 272 FEDDPYVHTSLLTMYGKCQMIESAEKVFNEVP------------DKEIELWNALISAYVG 319

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL-------------FVKMPH 261
            G    A  I++QM         T++S    +L++  +S++              VK P 
Sbjct: 320 NGYAYDALRIYKQM------KLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPL 373

Query: 262 PDTLT-WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             ++T  +A+++ Y++ G+   A   F  M ++++V+W S+I+G   N+ Y+ A+  F  
Sbjct: 374 QSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRA 433

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGA 379
           M+ +  KPD    +SI+S  +G+  + LG  IH  V K+ +  DV + ++L+ MY++ G 
Sbjct: 434 MEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGF 493

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
              A  IF +M  LKN+V+WN++I     +     ++ LF  +    + P  ++F SVL+
Sbjct: 494 PERAGNIFSDMP-LKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLA 552

Query: 440 ACAHAGLVEEGR---------------QHFKSMVNEY---GIEPRIEH------------ 469
           A +    + +G+               Q   ++++ Y   G+    +H            
Sbjct: 553 AISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVA 612

Query: 470 FASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNVELAQVAAEAL- 525
           + S++   G HG    A++L   M     +PD   + +LL +C     +E      E + 
Sbjct: 613 WNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMK 672

Query: 526 MK--VEPENSTPYVLLYNMYADVGRWDDA 552
           MK  +EP     YV + ++Y   G   DA
Sbjct: 673 MKFGIEPRME-HYVNIVDLYGRAGCLGDA 700



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 170/391 (43%), Gaps = 54/391 (13%)

Query: 171 QRGRVEEARKLFDKIPVNCDR-----------GEGNVRFKRNIVS-------------WN 206
           Q+ +  EA KL+ K PV   R              N+++ + I S              +
Sbjct: 33  QQRQYIEALKLYTKSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITS 92

Query: 207 SMIMCYAKAGDVVSAREIFEQMLER-----DTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           S+I  Y K G    A ++F+Q+ +      D   WN++I GY     +EE    F +M  
Sbjct: 93  SLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQS 152

Query: 262 P-------------------DTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSM 301
                               D     A++  Y + G    A   FK++  + N+V+WN M
Sbjct: 153 SGYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVM 212

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
           I G   N  +E +++ ++  + E  K    +F+  LS       +  G Q+H    K   
Sbjct: 213 IGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGF 272

Query: 362 PDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
            D P ++ +L+TMY +C  I  A  +F E+   K +  WNA+I     +G+A +AL ++K
Sbjct: 273 EDDPYVHTSLLTMYGKCQMIESAEKVFNEVP-DKEIELWNALISAYVGNGYAYDALRIYK 331

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M+   VL    T ++VL++ + AGL + GR     +V    ++  I   ++L+ +  + 
Sbjct: 332 QMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKR-PLQSSITIQSALLTMYSKF 390

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALL-GACR 510
           G    A  +   M  E D   WG+++ G C+
Sbjct: 391 GDSNYANSIFSTMK-ERDVVAWGSVISGFCQ 420



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 107/277 (38%), Gaps = 63/277 (22%)

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPI 366
            + Y  A+KL+ +  V      R T+ S+L   + + +L  G  IH  ++T  +  D  I
Sbjct: 34  QRQYIEALKLYTKSPV---YTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYI 90

Query: 367 NNALITMYARCGAIVEARIIFEEMKL----LKNVVSWNAMIGGCASHGFATEALELFKSM 422
            ++LI +Y +CG   +A  +F+++      + +V  WN++I G    G   E +  F  M
Sbjct: 91  TSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRM 150

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
           +S                   +G  E  + H   + N    +P +E   +L+D   + GR
Sbjct: 151 QS-------------------SGYKEGKQIHSYIVRNMLNFDPFLE--TALIDTYFKCGR 189

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
             +A  L K +    +   W  ++G                                   
Sbjct: 190 PTEARYLFKKLKDRSNIVAWNVMIGG---------------------------------- 215

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFSPCG 579
           + + G W+++ E  LL K+ N+K  +       S CG
Sbjct: 216 FGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACG 252


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 192/636 (30%), Positives = 322/636 (50%), Gaps = 84/636 (13%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS----------------SRGSG----- 43
           Y +   +  A +LFDEMP+RDVV+W  +ISG +                 S G G     
Sbjct: 155 YARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPN 214

Query: 44  --FLEEARYLFDIMPERDCVTW-----------------NTVISGYAKTGEMEEALRLFN 84
              +E       ++ E    T                  +++ S Y K    E+A  LF 
Sbjct: 215 SRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFP 274

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGL-----IQN 135
            +P +++VSW ++I  + + G    A+E F  M       D   +S L++GL     ++ 
Sbjct: 275 ELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRG 334

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           G+   AA V    G       D V   N LI  Y +  +V+ A  +F  +          
Sbjct: 335 GKTFHAAIVRRNFG-------DSVLIGNALISMYAKCKQVDIAATVFRML---------- 377

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML--ERDTFSWNT-------MISGYIHV 246
              +R+  SW+SM++ Y KAG  +   E++ +M   ++D F ++T            +  
Sbjct: 378 --HQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGR 435

Query: 247 LDMEEASNLFV--KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           L + ++++ +    +   ++   NA++S Y + GN ++A   F  +  K++V+W+++I+ 
Sbjct: 436 LRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISS 495

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-D 363
                  + A+ L+ QM  EG KP+  T  S++S  + +  L  G  IH  V    +  D
Sbjct: 496 YSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECD 555

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           + I  AL+ MY +CG +  AR +F+ M L ++VV+WN MI G   HG A +AL+LF  M 
Sbjct: 556 LSICTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGEAIQALKLFSMME 614

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
              V P  +TF+++LSAC HAGLV++GR+ F  M  EY +EP ++H+A +VD++G+ G L
Sbjct: 615 RGNVKPNSLTFLAILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHL 673

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
           ++A D++  MP EPD  +WG LLGAC++H+N E+    A+     +PEN   Y+L+ N Y
Sbjct: 674 QEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSY 733

Query: 544 ADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFSPCG 579
               +W++  ++R +MK++ ++K  G+S +D   CG
Sbjct: 734 GSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDI--CG 767



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 121/533 (22%), Positives = 221/533 (41%), Gaps = 76/533 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           + S Y K      AR LF E+P++D+VSW  +I  Y     +G  E+A  LF  M E   
Sbjct: 256 LFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCR---AGHAEKAVELFLGMEESGL 312

Query: 59  -------------------------------------DCVTWNTVISGYAKTGEMEEALR 81
                                                  +  N +IS YAK  +++ A  
Sbjct: 313 QPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAAT 372

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS-GLIQNGELDE 140
           +F  +  R+  SW++M+  + + G     +E +  M  RD        +  +        
Sbjct: 373 VFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSR 432

Query: 141 AARVLVKCGSRCDGGEDLV----RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
             R+ +   + C   + L        N LI  YG+ G  + ARK+F           G V
Sbjct: 433 LGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIF-----------GMV 481

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEA 252
           + K ++V+W+++I  Y+  G    A  +++QML      ++ +  ++IS   ++  +E  
Sbjct: 482 KTK-DVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHG 540

Query: 253 SNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             +   +       D     A+V  Y + G L +A   F  M ++++V+WN MI+G   +
Sbjct: 541 ELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMH 600

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIH-QMVTKTVIPDVP 365
            +   A+KLF  M+    KP+  TF +ILS    +G+VD   G ++  +M   ++ P++ 
Sbjct: 601 GEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVD--KGRELFTRMEEYSLEPNLK 658

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
               ++ +  + G + EA  +   M +  +   W  ++G C  H      L + K  ++F
Sbjct: 659 HYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAK--KAF 716

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
              P    +  ++S    +       +  + M+  +G+E  I    S +DI G
Sbjct: 717 ASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGW--STIDICG 767



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 168/387 (43%), Gaps = 53/387 (13%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PG 119
           ++S Y+  G    A   F + P  +   WN+++    +  D A+ +    RM      P 
Sbjct: 47  LVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPS 106

Query: 120 RDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           R +A L A  S   + G L   A V    V+ G     G+  V   ++L+  Y + G V 
Sbjct: 107 RFTAPLVA--SAAAELGALPVGAAVHAYSVRFGLL--EGDGSVAVASSLVYMYARCGSVR 162

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI---MCYAKAGDVVS------------- 220
           +A +LFD++P            +R++V+W ++I   +C  + G+ +S             
Sbjct: 163 DAVRLFDEMP------------ERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGG 210

Query: 221 AR---EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQI 277
           AR      E  LE         +   +H   ++        + H  ++  +++ S Y + 
Sbjct: 211 ARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAG------VGHCPSVV-SSLFSMYTKC 263

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
            + E A   F  +P+K+LVSW S+I         E A++LF+ M+  G +PD    S +L
Sbjct: 264 DSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLL 323

Query: 338 SMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
           +       +  G   H  + +    D V I NALI+MYA+C  +  A  +F  M   ++ 
Sbjct: 324 AGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVF-RMLHQRDT 382

Query: 397 VSWNAMIGGCASHGFATEALELFKSMR 423
            SW++M+      G   + LEL++ M+
Sbjct: 383 DSWSSMVVAYCKAGLDLKCLELYREMQ 409



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 26/289 (8%)

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
           P PD      +VS Y+  G   LA   F   P  +   WNS++       D+   +    
Sbjct: 39  PRPDFAA--KLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASDFASTLSAHR 96

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD----VPINNALITMYA 375
           +M+  G +P R T   + S ++ +  L +G  +H    +  + +    V + ++L+ MYA
Sbjct: 97  RMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYA 156

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE-LFKSMRSF---KVLPTY 431
           RCG++ +A  +F+EM   ++VV+W A+I GC  +G   E L  L + +RS       P  
Sbjct: 157 RCGSVRDAVRLFDEMP-ERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNS 215

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH----FASLVDIVGRHGRLEDAM 487
            T  S L AC   G +  G     + ++ +G++  + H     +SL  +  +    EDA 
Sbjct: 216 RTMESGLEACGVLGELSVG-----TCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDAR 270

Query: 488 DLIKGMPFEPDKAVWGALLGA-CRVHNNVELAQVAAEALMKVEPENSTP 535
            L   +P E D   W +L+GA CR  +    A+ A E  + +E     P
Sbjct: 271 ILFPELP-EKDLVSWTSLIGAYCRAGH----AEKAVELFLGMEESGLQP 314


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 189/577 (32%), Positives = 293/577 (50%), Gaps = 101/577 (17%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARN----------VVSWNAM 97
           AR+LFD +P        T+IS  ++    +E L  F+S+  R           VV   A+
Sbjct: 38  ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAI 97

Query: 98  ISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGED 157
           ++   Q   V                   A+V GL+                     G+ 
Sbjct: 98  LAASRQGKQV----------------HCHAIVRGLL---------------------GDI 120

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
            V+    L+  Y + G ++ A K+FD++PV            ++ +  N +I  Y+K+GD
Sbjct: 121 FVQ--TALVDFYAKNGDMDCAVKVFDEMPV------------KDPIPMNCLITGYSKSGD 166

Query: 218 VVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSG 273
           VV AR +F+ M+ R + SWN+MI+ Y H  + +EA  LF +M      P+ +T   M S 
Sbjct: 167 VVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSI 226

Query: 274 YAQIGNLEL------------------------------ALDF----FKRMPQKNLVSWN 299
            A+ G+LE                               A+D     F RM Q+++V+W+
Sbjct: 227 CAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWS 286

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           +MIAG   N     +++LF +M+    KP+  T   +LS  + +    LG QI   V   
Sbjct: 287 TMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQ 346

Query: 360 VIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
            +P    + +ALI MY +CG +  AR +F  M+  K V++WN+M+ G A +GFA +A+ L
Sbjct: 347 NLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEH-KVVITWNSMMRGLALNGFAQDAITL 405

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           +K M    V P  ITF+++L+AC HAGLV++G   FK M   + + P++EH A +VD++ 
Sbjct: 406 YKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLC 465

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           + GRL +A   I  M  EP+  +W  LL ACR H +VELA++AA  L+ +EP+NS+ YVL
Sbjct: 466 KSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVL 525

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           L N+YAD G W D  E+R LM+S N++K + YSW++ 
Sbjct: 526 LSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIEL 562



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 191/420 (45%), Gaps = 55/420 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K  +M  A K+FDEMP +D +  N +I+GY     SG + +AR LFD M  R  
Sbjct: 126 LVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGY---SKSGDVVKARRLFDGMVRRTS 182

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMISGFLQNGDVANAIEFFDR 116
            +WN++I+ YA  GE +EALRLF  M +     N ++   M S   + GD+         
Sbjct: 183 ASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSL 242

Query: 117 MPGRDSASL---SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           +  +D  ++   +AL+   ++   +DEA R   +   R     D+V A++T+I GY Q G
Sbjct: 243 IAEQDLQNMIVHTALMEMYVKCRAIDEARREFDRMQQR-----DVV-AWSTMIAGYAQNG 296

Query: 174 RVEEARKLFDKI-PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           R  E+ +LF+++   +C   E  +     ++S  + +      G + S  E   Q L   
Sbjct: 297 RPHESLELFERMKATSCKPNEVTL---VGVLSACAQLGSDELGGQIGSHVE--SQNLPLT 351

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           ++  + +I  Y     +  A ++F +M H   +TWN+M+ G A  G  + A+  +K M +
Sbjct: 352 SYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTE 411

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGM 350
           +++                               +P+  TF ++L+  +  G+VD  +  
Sbjct: 412 EDV-------------------------------QPNEITFVALLTACTHAGLVDQGMSF 440

Query: 351 QIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
                    V P V     ++ +  + G + EA     +M++  N V W+ ++  C +H 
Sbjct: 441 FKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHA 500


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 187/569 (32%), Positives = 292/569 (51%), Gaps = 85/569 (14%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDV 107
           AR+LFD +P        T+IS  ++    +E L  F+S+  R                  
Sbjct: 38  ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGS---------------- 81

Query: 108 ANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV--LVKCGSRCDGGEDLVRAYNTL 165
                  D  PG         V  ++++  +  A+R    V C +   G    +     L
Sbjct: 82  -------DVPPG--------CVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTAL 126

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           +  Y + G ++ A K+FD++PV            ++ +  N +I  Y+K+GDVV AR +F
Sbjct: 127 VDFYAKNGDMDCAVKVFDEMPV------------KDPIPMNCLITGYSKSGDVVKARRLF 174

Query: 226 EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLE 281
           + M+ R + SWN+MI+ Y H  + +EA  LF +M      P+ +T   M S  A+ G+LE
Sbjct: 175 DGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLE 234

Query: 282 L------------------------------ALDF----FKRMPQKNLVSWNSMIAGCET 307
                                          A+D     F RM Q+++V+W++MIAG   
Sbjct: 235 TGKWARSLIAEQDLQNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQ 294

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-I 366
           N     +++LF +M+    KP+  T   +LS  + +    LG QI   V    +P    +
Sbjct: 295 NGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYL 354

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            +ALI MY +CG +  AR +F  M+  K V++WN+M+ G A +GFA +A+ L+K M    
Sbjct: 355 GSALIDMYTKCGHVGRARSVFNRMEH-KVVITWNSMMRGLALNGFAQDAITLYKEMTEED 413

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           V P  ITF+++L+AC HAGLV++G   FK M   + + P++EH A +VD++ + GRL +A
Sbjct: 414 VQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREA 473

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
              I  M  EP+  +W  LL ACR H +VELA++AA  L+ +EP+NS+ YVLL N+YAD 
Sbjct: 474 YKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADA 533

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           G W D  E+R LM+S N++K + YSW++ 
Sbjct: 534 GLWGDVREIRDLMRSKNVQKLSAYSWIEL 562



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 191/420 (45%), Gaps = 55/420 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K  +M  A K+FDEMP +D +  N +I+GY     SG + +AR LFD M  R  
Sbjct: 126 LVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGY---SKSGDVVKARRLFDGMVRRTS 182

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMISGFLQNGDVANAIEFFDR 116
            +WN++I+ YA  GE +EALRLF  M +     N ++   M S   + GD+         
Sbjct: 183 ASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSL 242

Query: 117 MPGRDSASL---SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           +  +D  ++   +AL+   ++   +DEA R   +   R     D+V A++T+I GY Q G
Sbjct: 243 IAEQDLQNMIVHTALMEMYVKCQAIDEARREFDRMQQR-----DVV-AWSTMIAGYAQNG 296

Query: 174 RVEEARKLFDKI-PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           R  E+ +LF+++   +C   E  +     ++S  + +      G + S  E   Q L   
Sbjct: 297 RPHESLELFERMKATSCKPNEVTL---VGVLSACAQLGSDELGGQIGSHVE--SQNLPLT 351

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           ++  + +I  Y     +  A ++F +M H   +TWN+M+ G A  G  + A+  +K M +
Sbjct: 352 SYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTE 411

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGM 350
           +++                               +P+  TF ++L+  +  G+VD  +  
Sbjct: 412 EDV-------------------------------QPNEITFVALLTACTHAGLVDQGMSF 440

Query: 351 QIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
                    V P V     ++ +  + G + EA     +M++  N V W+ ++  C +H 
Sbjct: 441 FKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHA 500


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 188/574 (32%), Positives = 301/574 (52%), Gaps = 84/574 (14%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           + F++ AR +FD +P  D     + I+ Y++     EALR F SM   NV          
Sbjct: 43  ASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNV---------- 92

Query: 102 LQNGDVANAIEFFDRMP-GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR 160
                    I  F   P  +  ASL A+  G        +   ++++ G         V 
Sbjct: 93  --------RIVCFTIPPIFKSCASLLAIDVG-------KQVHSLVIRYGFHSS-----VF 132

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
             N LI  Y +   +  A  +FD I V            ++ +++N +I  Y+++G+V++
Sbjct: 133 CQNALINFYAKINDLGSAELIFDGILV------------KDTIAYNCLISAYSRSGEVLA 180

Query: 221 AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQ 276
           ARE+F++M +R   SWN MIS Y    D  +   +F +M      P+ +T   ++S  A+
Sbjct: 181 ARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAK 240

Query: 277 IGNLELALDF-----------------------------------FKRMPQKNLVSWNSM 301
           +G+LE+ L                                     F  M ++++V+W++M
Sbjct: 241 LGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAM 300

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-TKTV 360
           IAG   N     A++LF  M+    KP+  T  S+LS  + +  +  G +I   V ++ +
Sbjct: 301 IAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGL 360

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
           I +V + +AL+ MY++CG I++AR IF+++    NV +WN+MI G A +GFA +A+ L+ 
Sbjct: 361 ISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNV-TWNSMIMGLAINGFAEDAIALYN 419

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M+  +V P  ITF+ +++AC HAG VE G + F+SM +++ I P IEHFA +VD+  R 
Sbjct: 420 RMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRS 479

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           GRL DA + I  M  EP+  +WG LL A R+H NVELA++A + L+++EP+NS  YV+L 
Sbjct: 480 GRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILS 539

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N+YA  GRW +A +VR LMK   ++K   YSWV+
Sbjct: 540 NIYASAGRWQEALKVRKLMKDKRVQKAAAYSWVE 573


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 200/627 (31%), Positives = 319/627 (50%), Gaps = 74/627 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           ++  Y+K       R +FDEM +R+VV+W  +ISGY  +R S   EE   LF  M +   
Sbjct: 138 LVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGY--ARNS-LNEEVLTLFMRMQDEGT 194

Query: 58  ------------------------------------RDCVTWNTVISGYAKTGEMEEALR 81
                                               +     N++I+ Y K G + +A  
Sbjct: 195 QPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARI 254

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD-------RMPGRDSASLSALVSGLIQ 134
           LF+    ++VV+WN+MISG+  NG    A+  F        R+     AS+  L + L +
Sbjct: 255 LFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKE 314

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
               ++    +VK G   D     +R    L+V Y +   + +A +LF +          
Sbjct: 315 LRFTEQLHCSVVKYGFVFDQN---IR--TALMVAYSKCMAMLDALRLFKETG-------- 361

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME 250
              F  N+VSW +MI  + +      A  +F +M  +    + F+++ +++  + V+   
Sbjct: 362 ---FLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTA-LPVISPS 417

Query: 251 EASNLFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           E     VK  +  + T   A++  Y ++G ++ A   F  +  K++V+W++M+AG     
Sbjct: 418 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAG 477

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV-DLHLGMQIHQMVTKTVI-PDVPIN 367
           + E AIK+F ++   G KP+  TFSSIL++ +     +  G Q H    K+ +   + ++
Sbjct: 478 ETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVS 537

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           +AL+TMYA+ G I  A  +F+  +  K++VSWN+MI G A HG A +AL++FK M+  KV
Sbjct: 538 SALLTMYAKKGHIESAEEVFKRQRE-KDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 596

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
               +TFI V +AC HAGLVEEG ++F  MV +  I P  EH + +VD+  R G+LE AM
Sbjct: 597 KMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAM 656

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
            +I  MP      +W  +L ACRVH   EL ++AAE ++ + PE+S  YVLL NMYA+ G
Sbjct: 657 KVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESG 716

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVD 574
            W +  +VR LM   N+KK  GYSW++
Sbjct: 717 DWQERAKVRKLMNERNVKKEPGYSWIE 743



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 193/444 (43%), Gaps = 68/444 (15%)

Query: 110 AIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGS-----RCDGGEDLVRAYNT 164
           A   FD+ P RD  S ++L+ G  ++G   EA R+ +          C     +++   T
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 165 LIVGYGQRGRVEEARKLFDK-IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
           L              +LF + +   C +      F  ++    S++  Y K  +    R 
Sbjct: 110 L------------CDELFGRQLHCQCIK----FGFLDDVSVGTSLVDTYMKGSNFKDGRN 153

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW------------ 267
           +F++M ER+  +W T+ISGY      EE   LF++M      P++ T+            
Sbjct: 154 VFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGV 213

Query: 268 -----------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
                                  N++++ Y + GN+  A   F +   K++V+WNSMI+G
Sbjct: 214 GGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISG 273

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPD 363
              N     A+ +F  M++   +    +F+SI+ + + + +L    Q+H  V K   + D
Sbjct: 274 YAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFD 333

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
             I  AL+  Y++C A+++A  +F+E   L NVVSW AMI G   +    EA+ LF  M+
Sbjct: 334 QNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMK 393

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
              V P   T+  +L+A     ++     H + +   Y     +    +L+D   + G++
Sbjct: 394 RKGVRPNEFTYSVILTALP---VISPSEVHAQVVKTNYERSSTVG--TALLDAYVKLGKV 448

Query: 484 EDAMDLIKGMPFEPDKAVWGALLG 507
           ++A  +  G+    D   W A+L 
Sbjct: 449 DEAAKVFSGID-NKDIVAWSAMLA 471



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 172/353 (48%), Gaps = 33/353 (9%)

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
           G     R+  A  LFDK P             R+  S+ S++  +++ G    A  +F  
Sbjct: 40  GAASSSRLYYAHNLFDKSP------------DRDRESYTSLLFGFSRDGRTQEATRLFLN 87

Query: 228 M----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH---------PDTLTWNAMVSGY 274
           +    +E D   +++++     + D      LF +  H          D     ++V  Y
Sbjct: 88  IQHLGMEMDCSIFSSVLKVSATLCD-----ELFGRQLHCQCIKFGFLDDVSVGTSLVDTY 142

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
            +  N +   + F  M ++N+V+W ++I+G   N   E  + LF++MQ EG +P+  TF+
Sbjct: 143 MKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFA 202

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLL 393
           + L + +       G+Q+H +V K  +   +P++N+LI +Y +CG + +ARI+F++ + +
Sbjct: 203 AALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTE-V 261

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           K+VV+WN+MI G A++G   EAL +F SMR   V  +  +F S++  CA+   +    Q 
Sbjct: 262 KSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQL 321

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             S+V +YG         +L+    +   + DA+ L K   F  +   W A++
Sbjct: 322 HCSVV-KYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMI 373


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 193/595 (32%), Positives = 312/595 (52%), Gaps = 39/595 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-RGSGFLEEARYLFDIMP--- 56
           ++S YVK  +   A ++F EM    +       S  +++  GS  +E  R +  ++    
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMG 232

Query: 57  -ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
            ++D  T N ++  Y K G ++ A  +F  MP  +VVSWNA+ISG + NG    AIE   
Sbjct: 233 YDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLL 292

Query: 116 RMPGR----DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVG 168
           +M       +  +LS+++      G  D   ++   ++K  +  D   D +     L+  
Sbjct: 293 QMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSD---DYIGV--GLVDM 347

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y +   +++ARK+FD +            F R+++  N++I   +  G    A  +F ++
Sbjct: 348 YAKNHFLDDARKVFDWM------------FHRDLILCNALISGCSHGGRHDEALSLFYEL 395

Query: 229 LERDTFSWNTMISGYIH-VLDMEEASN------LFVKMPHP-DTLTWNAMVSGYAQIGNL 280
            +       T ++  +     +E AS       L VK+    D    N ++  Y +   L
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCL 455

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
             A   F+     ++++  SMI         EGAIKLF++M  +G +PD    SS+L+  
Sbjct: 456 SDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515

Query: 341 SGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           + +     G Q+H  ++ +  + D    NAL+  YA+CG+I +A + F  +   + VVSW
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPE-RGVVSW 574

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           +AMIGG A HG    ALELF  M    + P +IT  SVL AC HAGLV+E +++F SM  
Sbjct: 575 SAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKE 634

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
            +GI+   EH++ ++D++GR G+L+DAM+L+  MPF+ + ++WGALLGA RVH + EL +
Sbjct: 635 MFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGK 694

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +AAE L  +EPE S  +VLL N YA  G W++  +VR LMK +NIKK    SW++
Sbjct: 695 LAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIE 749



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 191/398 (47%), Gaps = 22/398 (5%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +IS Y+K      A R+F+ +P    VSW+++++ +  NG   +AI+ F  M   +  
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRA-EGV 99

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
             +     ++     D      V   +   G    V   N L+  YG  G +++AR++F+
Sbjct: 100 CCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTM 239
           +              +RN VSWN ++  Y K      A ++F +M    ++   F ++ +
Sbjct: 160 EADS-----------ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCV 208

Query: 240 ISGYIHVLDME---EASNLFVKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           ++      ++E   +   + V+M +  D  T NA+V  Y ++G +++A   F++MP  ++
Sbjct: 209 VNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDV 268

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ- 354
           VSWN++I+GC  N     AI+L +QM+  G  P+  T SSIL   SG     LG QIH  
Sbjct: 269 VSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGF 328

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           M+      D  I   L+ MYA+   + +AR +F+ M   ++++  NA+I GC+  G   E
Sbjct: 329 MIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGCSHGGRHDE 387

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
           AL LF  +R   +     T  +VL + A        RQ
Sbjct: 388 ALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQ 425



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 127/272 (46%), Gaps = 9/272 (3%)

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           N ++S Y++      A   F  +P    VSW+S++     N     AI+ F  M+ EG  
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARII 386
            +      +L     + D  LG Q+H M   T    DV + NAL+ MY   G + +AR +
Sbjct: 101 CNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F E    +N VSWN ++     +    +A+++F  M    + PT   F  V++AC  +  
Sbjct: 158 FNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +E GRQ   +MV   G +  +    +LVD+  + GR++ A  + + MP + D   W AL+
Sbjct: 218 IEAGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALI 275

Query: 507 GACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
             C ++ +      A E L++++     P V 
Sbjct: 276 SGCVLNGH---DHRAIELLLQMKYSGLVPNVF 304


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 183/532 (34%), Positives = 282/532 (53%), Gaps = 34/532 (6%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD--R 116
           D      ++  Y K G++++A  LF+ MP RN+ SWNAMI GF Q G +      F   R
Sbjct: 86  DIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVFNLFMGMR 145

Query: 117 MPGR--DSASLSALVSGLIQNGEL---DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
           + G   D+A++  L   +I    L        + ++ G   D         NT I  Y +
Sbjct: 146 LVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDAD-----TSVSNTWIAAYSK 200

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G ++ A+ +F  I           +  R+ VSWNS+I CYA  G  V A + ++ +L  
Sbjct: 201 CGELQLAKMVFHGIQ----------KTARSSVSWNSLIACYAHFGKYVDAVKSYKGLL-C 249

Query: 232 DTFS--WNTMISGYIHVLDMEEASNLFVKMPH-------PDTLTWNAMVSGYAQIGNLEL 282
           D F    +T+IS        E     F+   H        D    N ++S Y++ G++  
Sbjct: 250 DGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISS 309

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F  M  +  VSW +MI+G       + A+ LF  M+  GEKPD  T  S++S    
Sbjct: 310 ATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGK 369

Query: 343 IVDLHLGMQIHQMVT-KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
              L LG  I    +   +  DV + NALI MYA+CG++ +AR IF  +   + VVSW A
Sbjct: 370 TGALGLGHWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPN-RTVVSWTA 428

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI  CA +G   EAL+LF  +    + P  ITF++VL AC H G +E+GR+ F  M   Y
Sbjct: 429 MIAACALNGEFREALDLFSLLSESGIEPNNITFLAVLQACCHGGYLEKGRECFMMMTERY 488

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           GI P ++H++ ++D++GR G+L +A+++I+ MP +PD+ +WGALLGAC++HNN+E+ +  
Sbjct: 489 GINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGALLGACKIHNNMEIGEYV 548

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +  L +++P  +  +V + N+YA VGRWD+   +R  M+SN ++K  G S V
Sbjct: 549 SRYLFELQPRVAVSFVEMANIYASVGRWDEVAAMRKTMRSNQMRKSPGKSVV 600



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 123/488 (25%), Positives = 205/488 (42%), Gaps = 120/488 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           M+  YVK  ++  A  LFD+MP R++ SWN MI G+                        
Sbjct: 93  MVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVFNLFMGMRLVGTRPD 152

Query: 37  -----------ISSRGSGFLEEARYL-FDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
                      IS++   FL+    +  +   + D    NT I+ Y+K GE++ A  +F+
Sbjct: 153 AATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTWIAAYSKCGELQLAKMVFH 212

Query: 85  SM--PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAA 142
            +   AR+ VSWN++I+ +   G   +A++ +                GL+ +G     A
Sbjct: 213 GIQKTARSSVSWNSLIACYAHFGKYVDAVKSY---------------KGLLCDG-FKPDA 256

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
             ++   S C   E L+  Y  LI G+G                + CD          +I
Sbjct: 257 STIISLLSSCQQPEALI--YGFLIHGHG--------------FQLGCD---------SDI 291

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH- 261
              N++I  Y++ GD+ SA  +F+ M  R   SW  MISGY  V  +++A  LF  M   
Sbjct: 292 SLINTLISMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEET 351

Query: 262 ---PDTLT------------------W-----------------NAMVSGYAQIGNLELA 283
              PD +T                  W                 NA++  YA+ G+L  A
Sbjct: 352 GEKPDIVTVLSLISGCGKTGALGLGHWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDA 411

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
            + F  +P + +VSW +MIA C  N ++  A+ LF  +   G +P+  TF ++L      
Sbjct: 412 REIFYSLPNRTVVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAVLQACCHG 471

Query: 344 VDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
             L  G +   M+T+   + P +   + +I +  R G ++EA  + ++M +  +   W A
Sbjct: 472 GYLEKGRECFMMMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGA 531

Query: 402 MIGGCASH 409
           ++G C  H
Sbjct: 532 LLGACKIH 539



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 177/401 (44%), Gaps = 55/401 (13%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  +I    +M+  Y K G V  A  +F++M  R+  SWN MI G+  +  ++   NLF+
Sbjct: 83  FYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVFNLFM 142

Query: 258 KM----PHPDTLT-----------------------------------WNAMVSGYAQIG 278
            M      PD  T                                    N  ++ Y++ G
Sbjct: 143 GMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTWIAAYSKCG 202

Query: 279 NLELALDFFKRMPQ--KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            L+LA   F  + +  ++ VSWNS+IA       Y  A+K +  +  +G KPD  T  S+
Sbjct: 203 ELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDASTIISL 262

Query: 337 LSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           LS       L  G  IH          D+ + N LI+MY+RCG I  A I+F+ M  ++ 
Sbjct: 263 LSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSATILFDGMS-IRT 321

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
            VSW AMI G +  G   +AL LF +M      P  +T +S++S C   G +  G     
Sbjct: 322 CVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGLGHW-ID 380

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN- 514
           +  + + ++  +    +L+D+  + G L DA ++   +P       W A++ AC ++   
Sbjct: 381 NYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLP-NRTVVSWTAMIAACALNGEF 439

Query: 515 ---VELAQVAAEALMKVEPENSTPYVLL----YNMYADVGR 548
              ++L  + +E+   +EP N T   +L    +  Y + GR
Sbjct: 440 REALDLFSLLSES--GIEPNNITFLAVLQACCHGGYLEKGR 478



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 21/304 (6%)

Query: 205 WNSMIMCYAKAGDVVSAREIFEQM----LERDTFSW---NTMISGYIHVLDMEEASNLFV 257
           WNS I      G+   A  +F Q+    L+ + F++   +   +   H+ + +      V
Sbjct: 20  WNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIHTHVV 79

Query: 258 KMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
           K P + D     AMV  Y + G ++ A + F +MP +N+ SWN+MI G       +    
Sbjct: 80  KSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVFN 139

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYA 375
           LF+ M++ G +PD  T   +         L     +H +  +T +  D  ++N  I  Y+
Sbjct: 140 LFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTWIAAYS 199

Query: 376 RCGAIVEARIIFEEM-KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           +CG +  A+++F  + K  ++ VSWN++I   A  G   +A++ +K +      P   T 
Sbjct: 200 KCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDASTI 259

Query: 435 ISVLSACAHA-----GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
           IS+LS+C        G +  G         + G +  I    +L+ +  R G +  A  L
Sbjct: 260 ISLLSSCQQPEALIYGFLIHGHGF------QLGCDSDISLINTLISMYSRCGDISSATIL 313

Query: 490 IKGM 493
             GM
Sbjct: 314 FDGM 317



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 158/363 (43%), Gaps = 66/363 (18%)

Query: 2   ISGYVKRREMAKARKLFDEMPQ--RDVVSWNVMISGYI----------SSRG---SGFLE 46
           I+ Y K  E+  A+ +F  + +  R  VSWN +I+ Y           S +G    GF  
Sbjct: 195 IAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKP 254

Query: 47  EARYLFDIM-----PE------------------RDCVTWNTVISGYAKTGEMEEALRLF 83
           +A  +  ++     PE                   D    NT+IS Y++ G++  A  LF
Sbjct: 255 DASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSATILF 314

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD 139
           + M  R  VSW AMISG+ + G V +A+  F+ M       D  ++ +L+SG  + G L 
Sbjct: 315 DGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALG 374

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
                +    S  +  +D+V   N LI  Y + G + +AR++F  +P             
Sbjct: 375 -LGHWIDNYASLHELKKDVVVC-NALIDMYAKCGSLNDAREIFYSLP------------N 420

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIF----EQMLERDTFSWNTMISGYIHVLDMEEASNL 255
           R +VSW +MI   A  G+   A ++F    E  +E +  ++  ++    H   +E+    
Sbjct: 421 RTVVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAVLQACCHGGYLEKGREC 480

Query: 256 FVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNK 309
           F+ M      +P    ++ M+    + G L  AL+  + MP K +   W +++  C+ + 
Sbjct: 481 FMMMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGALLGACKIHN 540

Query: 310 DYE 312
           + E
Sbjct: 541 NME 543



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 123/275 (44%), Gaps = 35/275 (12%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+   N +IS Y  SR  G +  A  LFD M  R CV+W  +ISGY++ G +++AL LFN
Sbjct: 290 DISLINTLISMY--SR-CGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFN 346

Query: 85  SMPAR----NVVSWNAMISGFLQNG--DVANAIEFFDRMP--GRDSASLSALVSGLIQNG 136
           +M       ++V+  ++ISG  + G   + + I+ +  +    +D    +AL+    + G
Sbjct: 347 AMEETGEKPDIVTVLSLISGCGKTGALGLGHWIDNYASLHELKKDVVVCNALIDMYAKCG 406

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            L++A  +     +R       V ++  +I      G   EA  LF  +       E  +
Sbjct: 407 SLNDAREIFYSLPNR------TVVSWTAMIAACALNGEFREALDLFSLLS------ESGI 454

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDME------ 250
             + N +++ +++      G +   RE F  M ER  +  N  +  Y  ++D+       
Sbjct: 455 --EPNNITFLAVLQACCHGGYLEKGRECFMMMTER--YGINPGLDHYSCMIDLLGRKGKL 510

Query: 251 -EASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELA 283
            EA  +   MP  PD   W A++       N+E+ 
Sbjct: 511 IEALEVIQDMPMKPDEGIWGALLGACKIHNNMEIG 545



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
           L  +  WN+ I G  + G A++AL LF  ++   + P   TF  +  ACA    +    Q
Sbjct: 14  LSTLTWWNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNS-Q 72

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
              + V +      I    ++VD+  + G+++DA +L   MP   + A W A++
Sbjct: 73  IIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVR-NIASWNAMI 125


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 193/595 (32%), Positives = 312/595 (52%), Gaps = 39/595 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-RGSGFLEEARYLFDIMP--- 56
           ++S YVK  +   A ++F EM    +       S  +++  GS  +E  R +  ++    
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMG 232

Query: 57  -ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
            ++D  T N ++  Y K G ++ A  +F  MP  +VVSWNA+ISG + NG    AIE   
Sbjct: 233 YDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLL 292

Query: 116 RMPGR----DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVG 168
           +M       +  +LS+++      G  D   ++   ++K  +  D   D +     L+  
Sbjct: 293 QMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSD---DYIGV--GLVDM 347

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y +   +++ARK+FD +            F R+++  N++I   +  G    A  +F ++
Sbjct: 348 YAKNHFLDDARKVFDWM------------FHRDLILCNALISGCSHGGRHDEALSLFYEL 395

Query: 229 LERDTFSWNTMISGYIH-VLDMEEASN------LFVKMPHP-DTLTWNAMVSGYAQIGNL 280
            +       T ++  +     +E AS       L VK+    D    N ++  Y +   L
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCL 455

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
             A   F+     ++++  SMI         EGAIKLF++M  +G +PD    SS+L+  
Sbjct: 456 SDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515

Query: 341 SGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           + +     G Q+H  ++ +  + D    NAL+  YA+CG+I +A + F  +   + VVSW
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPE-RGVVSW 574

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           +AMIGG A HG    ALELF  M    + P +IT  SVL AC HAGLV+E +++F SM  
Sbjct: 575 SAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKE 634

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
            +GI+   EH++ ++D++GR G+L+DAM+L+  MPF+ + ++WGALLGA RVH + EL +
Sbjct: 635 MFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGK 694

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +AAE L  +EPE S  +VLL N YA  G W++  +VR LMK +NIKK    SW++
Sbjct: 695 LAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIE 749



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 198/411 (48%), Gaps = 48/411 (11%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +IS Y+K      A R F+ +P    VSW+++++ +  NG   +AI+ F  M      
Sbjct: 41  NHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAE--- 97

Query: 124 SLSALVSGLIQNGELDEAARVLVKC------GSRCDG-------GEDLVRAYNTLIVGYG 170
                  G+  N   + A  V++KC      G++          G D+  A N L+  YG
Sbjct: 98  -------GVCCN---EFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVA-NALVAMYG 146

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-- 228
             G +++AR++F++              +RN VSWN ++  Y K      A ++F +M  
Sbjct: 147 GFGFMDDARRVFNEADS-----------ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVW 195

Query: 229 --LERDTFSWNTMISGYIHVLDME---EASNLFVKMPH-PDTLTWNAMVSGYAQIGNLEL 282
             ++   F ++ +++      ++E   +   + V+M +  D  T NA+V  Y ++G +++
Sbjct: 196 SGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDI 255

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F++MP  ++VSWN++I+GC  N     AI+L +QM+  G  P+  T SSIL   SG
Sbjct: 256 ASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSG 315

Query: 343 IVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
                LG QIH  M+      D  I   L+ MYA+   + +AR +F+ M   ++++  NA
Sbjct: 316 AGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCNA 374

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
           +I GC+  G   EAL LF  +R   +     T  +VL + A        RQ
Sbjct: 375 LISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQ 425



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 128/272 (47%), Gaps = 9/272 (3%)

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           N ++S Y++      A  FF  +P    VSW+S++     N     AI+ F  M+ EG  
Sbjct: 41  NHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARII 386
            +      +L     + D  LG Q+H M   T    DV + NAL+ MY   G + +AR +
Sbjct: 101 CNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F E    +N VSWN ++     +    +A+++F  M    + PT   F  V++AC  +  
Sbjct: 158 FNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +E GRQ   +MV   G +  +    +LVD+  + GR++ A  + + MP + D   W AL+
Sbjct: 218 IEAGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALI 275

Query: 507 GACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
             C ++ +      A E L++++     P V 
Sbjct: 276 SGCVLNGH---DHRAIELLLQMKYSGLVPNVF 304


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 174/516 (33%), Positives = 277/516 (53%), Gaps = 53/516 (10%)

Query: 67  ISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGR 120
           IS  +    ++ A+ +F     +N   +NA+I G  +N    ++I FF  M      P R
Sbjct: 81  ISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDR 140

Query: 121 DSASLSALVSGLIQNGELDEAARV-LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            +       +  + NG +  A    ++K G   D     VR   +L+  Y +   +  A 
Sbjct: 141 LTFPFVLKSAAALSNGGVGRALHCGILKFGLEFD---SFVRV--SLVDMYVKVEELGSAL 195

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           K+FD+ P +   G        +++ WN +I  Y + GD+V A E+F+ M ++DT SWN++
Sbjct: 196 KVFDESPESVKNG--------SVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSL 247

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           I+G++ + DM  A  LFVKMP  + ++W  MV+G++Q                       
Sbjct: 248 INGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQ----------------------- 284

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
                   N D E A++ F  M  EG +P+ +T  S LS  + I  L  G++IH  ++  
Sbjct: 285 --------NGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGN 336

Query: 360 VIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
               ++ I  AL+ MYA+CG I  A  +F E K  K ++ W+ MI G A HG   +AL+ 
Sbjct: 337 GFKLNLVIGTALVDMYAKCGNIEHAEKVFHETK-EKGLLIWSVMIWGWAIHGHFRKALQY 395

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F+ M+     P  + F++VL+AC+H+G V EG + F +M   Y IEP ++H+  +VD++G
Sbjct: 396 FEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLG 455

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           R GRL++A+  I+ MP  PD  VWGAL  ACR H NVE+A++A++ L+++EP++   YV 
Sbjct: 456 RAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVF 515

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           L N YA VGRWDDA  VR+ M+ +   K  G+S+++
Sbjct: 516 LSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIE 551



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 165/356 (46%), Gaps = 40/356 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR----DVVSWNVMISGYISSRGSGFLEEARYLFDIMP 56
           ++  YVK  E+  A K+FDE P+      V+ WNV+I GY      G L +A  LFD MP
Sbjct: 181 LVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRM---GDLVKATELFDSMP 237

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           ++D  +WN++I+G+ K G+M  A  LF  MP +NVVSW  M++GF QNGD   A+E F  
Sbjct: 238 KKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFC 297

Query: 117 M-----PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG-YG 170
           M        D   +SAL S   + G LD   R+          G  L     T +V  Y 
Sbjct: 298 MLEEGARPNDYTIVSAL-SACAKIGALDAGLRIH---NYLSGNGFKLNLVIGTALVDMYA 353

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-- 228
           + G +E A K+F +              ++ ++ W+ MI  +A  G    A + FE M  
Sbjct: 354 KCGNIEHAEKVFHETK------------EKGLLIWSVMIWGWAIHGHFRKALQYFEWMKF 401

Query: 229 --LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLE 281
              + D+  +  +++   H   + E    F  M       P    +  +V    + G L+
Sbjct: 402 TGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLD 461

Query: 282 LALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA-IKLFIQMQVEGEKPDRHTFSS 335
            AL F + MP   + V W ++   C T+K+ E A +     +Q+E + P  + F S
Sbjct: 462 EALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLS 517


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 189/589 (32%), Positives = 297/589 (50%), Gaps = 84/589 (14%)

Query: 30  NVMISGY--ISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP 87
           +++++ Y  ++  G G L  AR LFD +P  D V +NT+I  Y  +    EALRL   M 
Sbjct: 45  DLLLASYCALAKAGHGVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGML 104

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
            R ++     +   ++   +A A E    + G       AL  GL+         +V V 
Sbjct: 105 RRGILPNEFTLPFVVKACTIAQAREHALAVHG------VALRLGLV--------GQVFVG 150

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
                          N L+  Y   G + ++R+ FD++              RN+VSWNS
Sbjct: 151 ---------------NALLHSYASAGSLGDSRRFFDEM------------VDRNVVSWNS 183

Query: 208 MIMCYAKAGDVVSAREIFEQMLER----DTFSW---------------------NTMISG 242
           MI  YA+AGD      +F +M  +    D F+                        ++SG
Sbjct: 184 MIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSG 243

Query: 243 --------------YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
                         Y    D+  A   F  MP    ++W +M+    + G++  A  +F 
Sbjct: 244 SRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFD 303

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            MP++N+VSWN+MI+          A+ L+ QMQ +G  PD  T  ++LS S  I DL +
Sbjct: 304 HMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTV 363

Query: 349 GMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G  +H  +   +  PDV + N+L+ MYA+CG +  A  +F EM   +NVVSWN +IGG A
Sbjct: 364 GKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEM-CNRNVVSWNVIIGGLA 422

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
            HG A + +  F+SM +    P  ITF+++LSAC+H GL+E G+ +F+SM + Y ++  +
Sbjct: 423 MHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEV 482

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
           EH+A +VD++GR G LE A+ LIK MP +PD  VWGALLGACR+H NV++ +   + L++
Sbjct: 483 EHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLLE 542

Query: 528 VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           +E  +   +VL+ N+  +  +W+D   +R LMK    +K  G S ++ +
Sbjct: 543 LEGISGGLFVLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEIN 591



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 128/493 (25%), Positives = 201/493 (40%), Gaps = 95/493 (19%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISS---RGSGFLEEARYLFDIMPE--------RD 59
           +  AR+LFD +P  D V +N +I  Y +S   R +  L        I+P         + 
Sbjct: 62  LCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKA 121

Query: 60  CV-------------------------TWNTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
           C                            N ++  YA  G + ++ R F+ M  RNVVSW
Sbjct: 122 CTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSW 181

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGS 150
           N+MI G+ Q GD       F  M  +    D  +L +L+    Q G L E  R LV C  
Sbjct: 182 NSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNL-EIGR-LVHCRM 239

Query: 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
              G    +   + L+  YG+ G +  AR+ F+ +P+            +++VSW SM+ 
Sbjct: 240 LVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPI------------KSVVSWTSMLC 287

Query: 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP---------- 260
              K G V +AR  F+ M ER+  SWN MIS Y+      EA +L+ +M           
Sbjct: 288 AQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEIT 347

Query: 261 -----------------------------HPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
                                        +PD    N+++  YA+ G ++ A+  F  M 
Sbjct: 348 LVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMC 407

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
            +N+VSWN +I G   +      I  F  M  +   PD  TF ++LS  S    L  G  
Sbjct: 408 NRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQH 467

Query: 352 IHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
             + +     V  +V     ++ +  R G + +A  + +EM +  +VV W A++G C  H
Sbjct: 468 YFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIH 527

Query: 410 GFATEALELFKSM 422
           G      ++ K +
Sbjct: 528 GNVKIGRQVIKQL 540



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 189/442 (42%), Gaps = 65/442 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSGFLEE 47
           ++  Y     +  +R+ FDEM  R+VVSWN MI GY  +             R  GFLE+
Sbjct: 153 LLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLED 212

Query: 48  ARYLFDIM-----------------------PERDCVTWNTVISGYAKTGEMEEALRLFN 84
              L  ++                          D +  + ++  Y K G++  A R F 
Sbjct: 213 EFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFE 272

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            MP ++VVSW +M+    ++G V  A  +FD MP R+  S +A++S  +Q G+  EA  +
Sbjct: 273 MMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDL 332

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
             +  S+    +++      ++   G+ G +   + +   I  N         +  ++  
Sbjct: 333 YNQMQSQGLAPDEITLV--AVLSASGRIGDLTVGKMVHLYIRDNI--------YNPDVSL 382

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH--- 261
            NS++  YAK G V +A  +F +M  R+  SWN +I G        +    F  M     
Sbjct: 383 VNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSF 442

Query: 262 -PDTLTWNAMVSGYAQIGNLELALDFFKRMP-----QKNLVSWNSMIAGCETNKDYEGAI 315
            PD +T+ A++S  +  G LE    +F+ M      +  +  +  M+         E A+
Sbjct: 443 APDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAV 502

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYA 375
            L  +M +   KPD   + ++L    G   +H  ++I + V K ++    I+  L  + +
Sbjct: 503 CLIKEMPM---KPDVVVWGALL----GACRIHGNVKIGRQVIKQLLELEGISGGLFVLIS 555

Query: 376 RCGAIVEARIIFEEMKLLKNVV 397
               ++     +E+MK L+ ++
Sbjct: 556 N---LLYETHQWEDMKRLRKLM 574


>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
 gi|194692242|gb|ACF80205.1| unknown [Zea mays]
 gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
          Length = 590

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 158/415 (38%), Positives = 246/415 (59%), Gaps = 14/415 (3%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N LI  Y +   +   RK+FD+         G V   R++VSWNSM+  Y   G++  A+
Sbjct: 152 NALISFYCRILDIRSGRKVFDE--------AGGV--SRDLVSWNSMVAGYVGCGEMGLAQ 201

Query: 223 EIFEQMLERDTFSWNTMISGYIHV--LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNL 280
           E+F++M ++DTFSW T+I GY       ++ A  LF +MP  D + WN+M+ GYA+ G +
Sbjct: 202 EMFDEMPQKDTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLVCWNSMIDGYARHGRM 261

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           + A   F+ MP++N++SW+ +I G  +  + + A++ F  M   G +PDR      +S  
Sbjct: 262 DEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAAVGAVSAC 321

Query: 341 SGIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           + +  L  G  +H  +  K ++ DV +  ALI MY +CG +  A +IFE M   ++VV+W
Sbjct: 322 AQLGALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAE-RSVVTW 380

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N MI G  +HGF  +A+ LF  M +  V    ++ + +L+AC HAGLV EG + F  M  
Sbjct: 381 NVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVSEGLEIFHRMKK 440

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
           ++GI+P++EH+ +LVD++GR GRL+ A   I+ MP EP   +WG+LL ACR H+ VELA+
Sbjct: 441 DFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSHSCVELAE 500

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           ++ E L  +  ++S  YVLL N+YAD G W D   +R LM    ++K  G S ++
Sbjct: 501 LSVERLADLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIE 555



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 161/328 (49%), Gaps = 33/328 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GYV   EM  A+++FDEMPQ+D  SW  +I GY    G+G ++ AR LFD MPERD 
Sbjct: 187 MVAGYVGCGEMGLAQEMFDEMPQKDTFSWATLIDGYGKQGGAG-VDRARELFDQMPERDL 245

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
           V WN++I GYA+ G M+EA  LF  MP RNV+SW+ +I G +  G+   A+E+F  M   
Sbjct: 246 VCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRC 305

Query: 118 ---PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
              P R +A     VS   Q G L E  R L     +     D+V     LI  Y + G 
Sbjct: 306 GLRPDRIAA--VGAVSACAQLGAL-EQGRWLHSYLEKKKLLSDVV-VQTALIDMYVKCGC 361

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LE 230
           ++ A  +F+ +             +R++V+WN MI+     G  + A  +F +M    + 
Sbjct: 362 LDLAMLIFESMA------------ERSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVA 409

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALD 285
            D  S   M++   H   + E   +F +M       P    + A+V    + G L+ A  
Sbjct: 410 VDDLSVLGMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARH 469

Query: 286 FFKRMPQKNLVS-WNSMIAGCETNKDYE 312
             + MP +     W S++A C ++   E
Sbjct: 470 AIETMPMEPTPELWGSLLAACRSHSCVE 497



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 153/304 (50%), Gaps = 29/304 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMP--QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           +IS Y +  ++   RK+FDE     RD+VSWN M++GY+   G G +  A+ +FD MP++
Sbjct: 154 LISFYCRILDIRSGRKVFDEAGGVSRDLVSWNSMVAGYV---GCGEMGLAQEMFDEMPQK 210

Query: 59  DCVTWNTVISGYAKTG--EMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           D  +W T+I GY K G   ++ A  LF+ MP R++V WN+MI G+ ++G +  A   F+ 
Sbjct: 211 DTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLVCWNSMIDGYARHGRMDEARSLFEE 270

Query: 117 MPGRDSASLSALVSGLIQNGELDEAA---RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           MP R+  S S ++ G +  GE  EA    + +++CG R     D + A    +    Q G
Sbjct: 271 MPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLR----PDRIAAVGA-VSACAQLG 325

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
            +E+ R L   +           +   ++V   ++I  Y K G +  A  IFE M ER  
Sbjct: 326 ALEQGRWLHSYLE--------KKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERSV 377

Query: 234 FSWNTMISGY-IHVLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFK 288
            +WN MI G   H   + +A  LF +M       D L+   M++     G +   L+ F 
Sbjct: 378 VTWNVMIVGLGTHGFGL-DAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVSEGLEIFH 436

Query: 289 RMPQ 292
           RM +
Sbjct: 437 RMKK 440



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 177/399 (44%), Gaps = 66/399 (16%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ERDCVTWNTVISGYAKTGEMEEALRL 82
           D+ + N +IS Y        +   R +FD      RD V+WN++++GY   GEM  A  +
Sbjct: 147 DLFTVNALISFYCRILD---IRSGRKVFDEAGGVSRDLVSWNSMVAGYVGCGEMGLAQEM 203

Query: 83  FNSMPARNVVSWNAMISGFLQNG--DVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
           F+ MP ++  SW  +I G+ + G   V  A E FD+MP RD    ++++ G  ++G    
Sbjct: 204 FDEMPQKDTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLVCWNSMIDGYARHG---- 259

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
                                            R++EAR LF+++P            +R
Sbjct: 260 ---------------------------------RMDEARSLFEEMP------------ER 274

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA---- 252
           N++SW+ +I  +   G+   A E F+ M    L  D  +    +S    +  +E+     
Sbjct: 275 NVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGALEQGRWLH 334

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           S L  K    D +   A++  Y + G L+LA+  F+ M ++++V+WN MI G  T+    
Sbjct: 335 SYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVGLGTHGFGL 394

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNAL 370
            A+ LF +M+ E    D  +   +L+  +    +  G++I   + K   + P V    AL
Sbjct: 395 DAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGAL 454

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           + +  R G + +AR   E M +      W +++  C SH
Sbjct: 455 VDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSH 493



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 143/324 (44%), Gaps = 55/324 (16%)

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL-FVKMP----HPDTLTW 267
           A   DVV AR        RD F+WNT I   +H      A+ L F +M      PD  T+
Sbjct: 61  AALADVVFARLPLPA--ARDPFAWNTAIR--LHAPARPRAALLYFARMRRCGVRPDAYTF 116

Query: 268 -----------------------------------NAMVSGYAQIGNLELALDFFKRMP- 291
                                              NA++S Y +I ++      F     
Sbjct: 117 PAVLKACGCAPGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGG 176

Query: 292 -QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
             ++LVSWNSM+AG      Y G  ++ +  ++  E P + TFS    +         G+
Sbjct: 177 VSRDLVSWNSMVAG------YVGCGEMGLAQEMFDEMPQKDTFSWATLIDGYGKQGGAGV 230

Query: 351 -QIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            +  ++  +    D+   N++I  YAR G + EAR +FEEM   +NV+SW+ +I G  S 
Sbjct: 231 DRARELFDQMPERDLVCWNSMIDGYARHGRMDEARSLFEEMP-ERNVISWSIVIDGHVSC 289

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G A EALE F+SM    + P  I  +  +SACA  G +E+GR    S + +  +   +  
Sbjct: 290 GEAKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGALEQGRW-LHSYLEKKKLLSDVVV 348

Query: 470 FASLVDIVGRHGRLEDAMDLIKGM 493
             +L+D+  + G L+ AM + + M
Sbjct: 349 QTALIDMYVKCGCLDLAMLIFESM 372



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 100/216 (46%), Gaps = 19/216 (8%)

Query: 287 FKRMP---QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
           F R+P    ++  +WN+ I           A+  F +M+  G +PD +TF ++L      
Sbjct: 68  FARLPLPAARDPFAWNTAIR-LHAPARPRAALLYFARMRRCGVRPDAYTFPAVLKACGCA 126

Query: 344 VDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM-KLLKNVVSWNA 401
                G+ +H + V + +  D+   NALI+ Y R   I   R +F+E   + +++VSWN+
Sbjct: 127 PGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSRDLVSWNS 186

Query: 402 MIG---GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           M+    GC   G A E  +      +F    ++ T I        AG V+  R+ F  M 
Sbjct: 187 MVAGYVGCGEMGLAQEMFDEMPQKDTF----SWATLIDGYGKQGGAG-VDRARELFDQMP 241

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
                E  +  + S++D   RHGR+++A  L + MP
Sbjct: 242 -----ERDLVCWNSMIDGYARHGRMDEARSLFEEMP 272


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 193/635 (30%), Positives = 322/635 (50%), Gaps = 91/635 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +++ Y K   + +ARK+FD +  RD VSW  MIS Y ++   GF +EA  L+  M     
Sbjct: 187 LVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANN---GFCDEALDLYQQMDADGI 243

Query: 57  ERDCVTWNT-------------------------------VISGYAKTGEMEEALRLFNS 85
           + D +T+ +                               +I+ YA+ G++  A + F  
Sbjct: 244 QPDSITFTSALLACTKLVDGKAIHARIVSSNMESDFVGSALINMYARCGDVSSARQAFEK 303

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEA 141
           +  ++VV W ++++ ++Q      A++ + RM       D  +    +      G L E 
Sbjct: 304 IQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEG 363

Query: 142 ARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
             +   + +CG      + LV  +  L+  Y + G ++ AR +F++           VR 
Sbjct: 364 KAIHSRVFECGF-----QSLV-VHTALLTMYAKCGELDAARAVFNR-----------VRQ 406

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISG------------ 242
           KRN+  W +MI  YA+AG    A E+++QM+   T    ++++ +++             
Sbjct: 407 KRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMK 466

Query: 243 -YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
            + HV + E ASN+ V+         NA+V+ YA+ G+LELA   F+   +K+LVSWN+M
Sbjct: 467 IHGHVENSELASNVAVQ---------NALVTMYAKCGSLELAKSAFEASGRKDLVSWNAM 517

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--T 359
           I     +     A+ L+  M  +G  PD  T +S LS  +    L LG +IH  V K  +
Sbjct: 518 IGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQS 577

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
               + +  AL+ MY RCG +  AR +FE+M   ++V+SW AM    A  G A + L+L+
Sbjct: 578 FRSSLMVQTALVNMYGRCGRLETARSMFEDMGQ-RDVLSWTAMTSAYAQQGHADQVLDLY 636

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M    + P  ITF S+L  C+HAGL+  G + F  M +E+ + P  EHF  +VD++GR
Sbjct: 637 LEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVPIREHFLCMVDLLGR 696

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            GRL DA  L++ MP++PD   W  +LG+C+ H++ + A+ AA  + +++PEN++ Y LL
Sbjct: 697 SGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVKELDPENTSLYSLL 756

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            +++   G   +A EV+L MK   +KKP G S ++
Sbjct: 757 SSIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLIE 791



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 153/581 (26%), Positives = 255/581 (43%), Gaps = 66/581 (11%)

Query: 16  KLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGE 75
           +L+DE+ Q+          G + S   G L   R+L      R+    N +I  Y   GE
Sbjct: 43  ELYDELLQQ---------CGRLGSLAEGKLVH-RHLLRTGHGRNQFLGNLLIQMYGNCGE 92

Query: 76  MEEALRLFNSMPA-RNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVS 130
           +  A   F +  + + V  +N M+S + +NG    A+E + RM    P  D  +   ++ 
Sbjct: 93  IHLARAAFQNFASIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLG 152

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
                G L EA  +            D +   N L+  YG+ G VEEARK+FD I     
Sbjct: 153 SCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIK---- 208

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHV 246
                    R+ VSW SMI  YA  G    A ++++QM    ++ D+ ++ + +     +
Sbjct: 209 --------NRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKL 260

Query: 247 LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           +D +      V          +A+++ YA+ G++  A   F+++  K++V W S++    
Sbjct: 261 VDGKAIHARIVSSNMESDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYV 320

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPI 366
               Y  A+ L+ +M  EG   D  T+ + L   + +  L  G  IH  V +     + +
Sbjct: 321 QTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQSLVV 380

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
           + AL+TMYA+CG +  AR +F  ++  +NV  W AMI   A  G   EALEL+  M +  
Sbjct: 381 HTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEG 440

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQ---HFK------------SMVNEYGIEPRIEHFA 471
             P   TF +VL+AC+ +G +E G +   H +            ++V  Y     +E   
Sbjct: 441 TRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAK 500

Query: 472 SLVDIVGR---------------HGRLEDAMDLIKGMPFE---PDKAVWGALLGACRVHN 513
           S  +  GR               HG   +A+DL + M  +   PD+    + L AC +  
Sbjct: 501 SAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISG 560

Query: 514 NVELAQVAAEALMKVEPENSTPYV--LLYNMYADVGRWDDA 552
           +++L +     ++K +   S+  V   L NMY   GR + A
Sbjct: 561 SLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETA 601


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/461 (35%), Positives = 267/461 (57%), Gaps = 20/461 (4%)

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D+ + S L+   +  G + +A   LV      +G E      NTLI  Y + G ++EAR 
Sbjct: 15  DAITYSELIKCCLVRGAVQQAR--LVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARN 72

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSW 236
           LFD++P             RN+VSW +MI  Y+ +     A +    ML      + +++
Sbjct: 73  LFDEMP------------DRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTY 120

Query: 237 NTMISGYIHVLDMEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           ++++     +L++ +     +K+    D    +A++  Y+++G    AL+ F  M   +L
Sbjct: 121 SSVLRACDGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDL 180

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           V WNS+I G   N D +  + L+ +M+      D+ T +S+L   +G+  L LG Q+H  
Sbjct: 181 VVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVH 240

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
           V K    D+ +NNAL+ MY +CG++ +A ++F  M   K+V+SW+ MI G A +GF+ +A
Sbjct: 241 VLK-YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADA 299

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L+LF++M+S    P YIT + VL AC+HAGLV +G  +F+SM   +GI+P  EH+  ++D
Sbjct: 300 LKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIID 359

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++GR G+L++A+ LI  M  EPD   W  LLGACRVH NV+LA  AA+ ++K++P ++  
Sbjct: 360 LLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGT 419

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           Y+LL N+YA+  +W+D  EVR  M++  +KK  G SW++ S
Sbjct: 420 YILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVS 460



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 178/387 (45%), Gaps = 40/387 (10%)

Query: 43  GFLEEAR----YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMI 98
           G +++AR    ++F    E      NT+I+ Y K G ++EA  LF+ MP RNVVSW  MI
Sbjct: 30  GAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMI 89

Query: 99  SGFLQNGDVANAIEFFDRM------PGRDS-ASLSALVSGLIQNGELDEAARVLVKCGSR 151
           S +  +     A++F   M      P   + +S+     GL+   +L  +   ++K G  
Sbjct: 90  SAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNLRQLHGS---ILKVGLE 146

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
            D     V   + LI  Y + G   +A  +F+++               ++V WNS+I  
Sbjct: 147 SD-----VFVRSALIDTYSKLGEQHDALNVFNEMITG------------DLVVWNSIIGG 189

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH------VLDMEEASNLFVKMPHPDTL 265
           +A+  D      ++++M   D  +  + ++  +       +L++    ++ V     D +
Sbjct: 190 FAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLI 249

Query: 266 TWNAMVSGYAQIGNLELA-LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
             NA++  Y + G+LE A L F + M +K+++SW++MIAG   N     A+KLF  M+ +
Sbjct: 250 LNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSK 309

Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVE 382
           G KP+  T   +L   S    ++ G    Q + +   + P       +I +  R G + E
Sbjct: 310 GPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDE 369

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASH 409
           A  +  EM    + V+W  ++G C  H
Sbjct: 370 AVKLIHEMNHEPDAVTWRILLGACRVH 396



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 152/362 (41%), Gaps = 62/362 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           +I+ YVK   + +AR LFDEMP R+VVSW  MIS Y +S                     
Sbjct: 57  LINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPN 116

Query: 40  --------RGSGFLEEARYL----FDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP 87
                   R    L   R L      +  E D    + +I  Y+K GE  +AL +FN M 
Sbjct: 117 MYTYSSVLRACDGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMI 176

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDEAAR 143
             ++V WN++I GF QN D    +  + RM       D ++L++++        L+   +
Sbjct: 177 TGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQ 236

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
           V V         +DL+   N L+  Y + G +E+A  LF ++             +++++
Sbjct: 237 VHVHV---LKYDQDLI-LNNALLDMYCKCGSLEDANLLFTRMMT-----------EKDVI 281

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI----HVLDMEEASNLFVKM 259
           SW++MI   A+ G    A ++FE M  +        I G +    H   + +    F  M
Sbjct: 282 SWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSM 341

Query: 260 PH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEG 313
                  P    +  ++    + G L+ A+     M  + + V+W  ++  C  +K+ + 
Sbjct: 342 KEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDL 401

Query: 314 AI 315
           AI
Sbjct: 402 AI 403



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 145/354 (40%), Gaps = 64/354 (18%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +I+ Y+     G L+EAR LFD MP+R+ V+W T+IS Y+ +    +AL     M   
Sbjct: 55  NTLINMYVKF---GLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLRE 111

Query: 90  ------------------------------------NVVSWNAMISGFLQNGDVANAIEF 113
                                               +V   +A+I  + + G+  +A+  
Sbjct: 112 GVRPNMYTYSSVLRACDGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNV 171

Query: 114 FDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           F+ M   D    ++++ G  QN + DE    L K   R D   D     + L    G   
Sbjct: 172 FNEMITGDLVVWNSIIGGFAQNSDGDETLH-LYKRMKRADFVADQSTLTSVLRACTGL-A 229

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML-ERD 232
            +E  R++   +          +++ ++++  N+++  Y K G +  A  +F +M+ E+D
Sbjct: 230 LLELGRQVHVHV----------LKYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKD 279

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFK 288
             SW+TMI+G        +A  LF  M    P P+ +T   ++   +  G +     +F+
Sbjct: 280 VISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQ 339

Query: 289 RMPQKNLVSWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
            M +   +       GC  +        + A+KL  +M  E   PD  T+  +L
Sbjct: 340 SMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHE---PDAVTWRILL 390


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 201/660 (30%), Positives = 321/660 (48%), Gaps = 105/660 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMP--QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           +IS Y K   +  AR +F+ M   QR+VVSWN MI+ Y  +   G   EA  L+  M  +
Sbjct: 48  LISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQN---GHSTEALVLYWRMNLQ 104

Query: 59  ----DCVTW--------------------------------NTVISGYAKTGEMEEALRL 82
               D VT+                                N +++ YA+ G + +A R+
Sbjct: 105 GLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRM 164

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---DSASLSALVSGLIQNGELD 139
           F S+  R+  SWNA+I    Q+GD + A+  F  M      +S +   ++SG      L 
Sbjct: 165 FQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLP 224

Query: 140 EAARVLVKCGSRCDGGE-DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
           E  ++  +  +  +G + DLV A   LI  YG+ G   EAR++FDK+             
Sbjct: 225 EGRKIHAEIVA--NGFDTDLVVA-TALINMYGKCGSSHEAREVFDKMK------------ 269

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQM------------------------------ 228
           KR++VSWN MI CY   GD   A E+++++                              
Sbjct: 270 KRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRL 329

Query: 229 ---------LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG- 278
                    L+ +      +++ Y     +EEA  +F  M + D + W+ ++  YA  G 
Sbjct: 330 VHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGY 389

Query: 279 --NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ-VEGEKPDRHTFSS 335
             +   A   F R+  ++ +SWN+MI     N     A+K+F +M    G KPD  TF +
Sbjct: 390 GKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIA 449

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +L   + +  L     +H  ++++ +  +V + N LI MYARCG++ EA  +F   K  K
Sbjct: 450 VLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKE-K 508

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
            VVSW AM+   + +G   EAL+LF+ M    V P  +T+ S+L  C H G +E+G ++F
Sbjct: 509 TVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYF 568

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
             M   + + P  +HFA++VD++GR GRL DA +L++ MPFEPD   W   L ACR+H  
Sbjct: 569 TDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGK 628

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +EL + AAE + +++P ++ PY+ + N+YA  G W+    VR  M+   +KK  G S+++
Sbjct: 629 LELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIE 688



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 243/503 (48%), Gaps = 73/503 (14%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMP--ARNVVSWNAMISGFLQNGDVANAIEFF 114
           ERD +  N +IS Y K   + +A  +F SM    RNVVSWNAMI+ + QNG    A+  +
Sbjct: 39  ERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLY 98

Query: 115 DRMP----GRDSASLSALV---SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV 167
            RM     G D  +  +++   S L Q  E+    RV     S  D  + L    N L+ 
Sbjct: 99  WRMNLQGLGTDHVTFVSVLGACSSLAQGREIHN--RVFY---SGLDSFQSLA---NALVT 150

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y + G V +A+++F  +              R+  SWN++I+ ++++GD   A  IF++
Sbjct: 151 MYARFGSVGDAKRMFQSLQT------------RDETSWNAVILAHSQSGDWSGALRIFKE 198

Query: 228 M---LERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNL 280
           M   ++ ++ ++  +ISG+     + E   +  ++       D +   A+++ Y + G+ 
Sbjct: 199 MKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSS 258

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
             A + F +M ++++VSWN MI     N D+  A++L+ ++ +EG K  + TF SIL   
Sbjct: 259 HEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGAC 318

Query: 341 SGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-------- 391
           S +  L  G  +H  ++ + +  +V +  AL+ MYA+CG++ EAR +F  MK        
Sbjct: 319 SSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWS 378

Query: 392 -LL------------------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            L+                        ++ +SWNAMI     +G A  A+++F+ M    
Sbjct: 379 TLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAA 438

Query: 427 VL-PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            L P  +TFI+VL ACA  G + E +    + ++E  +E  +    +L+++  R G LE+
Sbjct: 439 GLKPDAVTFIAVLEACASLGRLSEVKA-LHAQISESELESNVVVTNTLINMYARCGSLEE 497

Query: 486 AMDLIKGMPFEPDKAVWGALLGA 508
           A  L      E     W A++ A
Sbjct: 498 AERLFAAAK-EKTVVSWTAMVAA 519



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 187/384 (48%), Gaps = 51/384 (13%)

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
           T++      G V E R L ++I  +        RF+R+ +  N++I  Y K   +V AR 
Sbjct: 12  TVLCSCSSCGDVVEGRALHERIRCS--------RFERDTMVGNALISMYGKCDSLVDARS 63

Query: 224 IFEQM--LERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTW---------- 267
           +FE M   +R+  SWN MI+ Y       EA  L+ +M       D +T+          
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 268 ----------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
                                 NA+V+ YA+ G++  A   F+ +  ++  SWN++I   
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAH 183

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDV 364
             + D+ GA+++F +M+ +  KP+  T+ +++S  S    L  G +IH ++V      D+
Sbjct: 184 SQSGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDL 242

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            +  ALI MY +CG+  EAR +F++MK  +++VSWN MIG    +G   EALEL++ +  
Sbjct: 243 VVATALINMYGKCGSSHEAREVFDKMK-KRDMVSWNVMIGCYVLNGDFHEALELYQKLDM 301

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
                T  TF+S+L AC+    + +GR    S + E G++  +    +LV++  + G LE
Sbjct: 302 EGFKRTKATFVSILGACSSVKALAQGRL-VHSHILERGLDSEVAVATALVNMYAKCGSLE 360

Query: 485 DAMDLIKGMPFEPDKAVWGALLGA 508
           +A  +   M    D   W  L+GA
Sbjct: 361 EARKVFNAMK-NRDAVAWSTLIGA 383



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 141/266 (53%), Gaps = 18/266 (6%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMP--QKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
           DT+  NA++S Y +  +L  A   F+ M   Q+N+VSWN+MIA    N     A+ L+ +
Sbjct: 41  DTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWR 100

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV-PINNALITMYARCGA 379
           M ++G   D  TF S+L   S +     G +IH  V  + +     + NAL+TMYAR G+
Sbjct: 101 MNLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGS 157

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           + +A+ +F+ ++  ++  SWNA+I   +  G  + AL +FK M+   V P   T+I+V+S
Sbjct: 158 VGDAKRMFQSLQ-TRDETSWNAVILAHSQSGDWSGALRIFKEMKC-DVKPNSTTYINVIS 215

Query: 440 ACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
             +   ++ EGR+ H + + N  G +  +    +L+++ G+ G   +A ++   M  + D
Sbjct: 216 GFSTPEVLPEGRKIHAEIVAN--GFDTDLVVATALINMYGKCGSSHEAREVFDKMK-KRD 272

Query: 499 KAVWGALLGACRV-----HNNVELAQ 519
              W  ++G C V     H  +EL Q
Sbjct: 273 MVSWNVMIG-CYVLNGDFHEALELYQ 297



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 111/222 (50%), Gaps = 25/222 (11%)

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARI 385
           +PD  TF ++L   S   D+  G  +H+ +  +    D  + NALI+MY +C ++V+AR 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 386 IFEEMKL-LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA-- 442
           +FE M    +NVVSWNAMI   A +G +TEAL L+  M    +   ++TF+SVL AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 443 ------HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
                 H  +   G   F+S+ N            +LV +  R G + DA  + + +   
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLAN------------ALVTMYARFGSVGDAKRMFQSLQTR 171

Query: 497 PDKAVWGALLGACRVHNNVELA-QVAAEALMKVEPENSTPYV 537
            D+  W A++ A     +   A ++  E    V+P NST Y+
Sbjct: 172 -DETSWNAVILAHSQSGDWSGALRIFKEMKCDVKP-NSTTYI 211


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 186/588 (31%), Positives = 299/588 (50%), Gaps = 84/588 (14%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR---NVVSWNAMISGFLQNGDVANAIEF 113
           E +    N +++ Y++ G +EEA  +F+ +  R   +V+SWN+++S  +++ +   A++ 
Sbjct: 187 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 246

Query: 114 FDRM-------PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE-DLVRAYNTL 165
           F +M       P  + + + ++V+ L   G L    +     G+    G    V   N L
Sbjct: 247 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNAL 306

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           I  Y + G +E A K+F+ +            FK ++VSWN+M+  Y+++G+  +A E+F
Sbjct: 307 IDAYAKCGLMENAVKVFNMM-----------EFK-DVVSWNAMVAGYSQSGNFEAAFELF 354

Query: 226 EQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKM------PH-------------- 261
           + M    +  D  +W  +I+GY       EA NLF +M      P+              
Sbjct: 355 KNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASL 414

Query: 262 -----------------------------PDTLTWNAMVSGYAQIGNLELALDFFKRMP- 291
                                         D + +NA++  Y++  + + A   F  +P 
Sbjct: 415 GAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPL 474

Query: 292 -QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE--GEKPDRHTFSSILSMSSGIVDLHL 348
            ++N+V+W  MI G     D   A+KLF++M  E  G  P+ +T S IL   + +  + +
Sbjct: 475 EERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRI 534

Query: 349 GMQIHQMVTKTVIPDVP---INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
           G QIH  V +    +     + N LI MY++CG +  AR +F+ M   K+ +SW +M+ G
Sbjct: 535 GKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQ-KSAISWTSMMTG 593

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
              HG  +EAL++F  MR    +P  ITF+ VL AC+H G+V++G  +F SM  +YG+ P
Sbjct: 594 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTP 653

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
           R EH+A  +D++ R GRL+ A   +K MP EP   VW ALL ACRVH+NVELA+ A   L
Sbjct: 654 RAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 713

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +++  EN   Y L+ N+YA  GRW D   +R LMK + IKK  G SWV
Sbjct: 714 VEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWV 761



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 151/551 (27%), Positives = 240/551 (43%), Gaps = 94/551 (17%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRD 121
           V++ Y   G  + AL +   +     V WN +I   ++ G + +AI    RM       D
Sbjct: 95  VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPD 154

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSR------CDGGEDLVRAYNTLIVGYGQRGRV 175
             +L  ++      GEL        +CGS       C+G E  V   N L+  Y + G +
Sbjct: 155 HFTLPHVLKAC---GELPS-----YRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSL 206

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML------ 229
           EEA  +FD+I     RG  +V      +SWNS++  + K+ +  +A ++F +M       
Sbjct: 207 EEASMIFDEIT---QRGIDDV------ISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEK 257

Query: 230 ---ER------------------------------------DTFSWNTMISGYIHVLDME 250
              ER                                    D F  N +I  Y     ME
Sbjct: 258 PTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLME 317

Query: 251 EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL----VSWNSMIAGCE 306
            A  +F  M   D ++WNAMV+GY+Q GN E A + FK M ++N+    V+W ++IAG  
Sbjct: 318 NAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYS 377

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI----- 361
                  A+ LF QM   G  P+  T  S+LS  + +     G +IH    K  +     
Sbjct: 378 QRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDN 437

Query: 362 ------PDVPINNALITMYARCGAIVEARIIFEEMKL-LKNVVSWNAMIGGCASHGFATE 414
                  D+ + NALI MY++C +   AR IF+++ L  +NVV+W  MIGG A +G + +
Sbjct: 438 DFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSND 497

Query: 415 ALELFKSMRS--FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
           AL+LF  M S  + V P   T   +L ACAH   +  G+Q    ++  +  E      A+
Sbjct: 498 ALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVAN 557

Query: 473 -LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE-- 529
            L+D+  + G ++ A  +   M  +     W +++    +H     A    + + K    
Sbjct: 558 CLIDMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV 616

Query: 530 PENSTPYVLLY 540
           P++ T  V+LY
Sbjct: 617 PDDITFLVVLY 627



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 184/431 (42%), Gaps = 58/431 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I  Y K   M  A K+F+ M  +DVVSWN M++GY     SG  E A  LF  M +   
Sbjct: 306 LIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY---SQSGNFEAAFELFKNMRKENI 362

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
             D VTW  VI+GY++ G   EAL LF  M               + +G + N +     
Sbjct: 363 PLDVVTWTAVIAGYSQRGCSHEALNLFRQM---------------IFSGSLPNCVTIISV 407

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCD---GGEDL-VRAYNTLIVGYGQR 172
           +     ASL A   G       +  A  L  C    D   GGED  +  YN LI  Y + 
Sbjct: 408 LSA--CASLGAFSQG------TEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKC 459

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
              + AR +FD IP+           +RN+V+W  MI  +A+ GD   A ++F +M+   
Sbjct: 460 RSFKAARSIFDDIPLE----------ERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 509

Query: 233 --------TFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNL 280
                   T S   M   ++  + + +  + +V   H          N ++  Y++ G++
Sbjct: 510 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDV 569

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           + A   F  M QK+ +SW SM+ G   +     A+ +F +M+  G  PD  TF  +L   
Sbjct: 570 DTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYAC 629

Query: 341 S--GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
           S  G+VD  L           + P        I + AR G + +A    ++M +    V 
Sbjct: 630 SHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVV 689

Query: 399 WNAMIGGCASH 409
           W A++  C  H
Sbjct: 690 WVALLSACRVH 700


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 191/576 (33%), Positives = 286/576 (49%), Gaps = 88/576 (15%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G    AR LFD +P+ D  T +T+IS     G   EA+++++S+  R +           
Sbjct: 26  GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKP--------- 76

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSG-LIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
                         MP   +A+ +  VSG  ++  E+ + A    +CG   D     V  
Sbjct: 77  -------------DMPVFLAAAKACAVSGDALRVKEVHDDA---TRCGVMSD-----VFV 115

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
            N LI  YG+   VE AR++FD + V            R++VSW S+  CY K G     
Sbjct: 116 GNALIHAYGKCKCVEGARRVFDDLVV------------RDVVSWTSLSSCYVKCGFPRKG 163

Query: 222 REIFEQM---------------------------------------LERDTFSWNTMISG 242
            ++F +M                                       +  + F  + ++S 
Sbjct: 164 MDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSL 223

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL----VSW 298
           Y   L + EA  +F  MPH D ++WN +++ Y +    E     F +M +  +     +W
Sbjct: 224 YAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATW 283

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           N++I GC  N   E A+++F +MQ  G KP+  T SSIL   S   +L +G +IH  V +
Sbjct: 284 NAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFR 343

Query: 359 T-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
              + D+    AL+ MYA+CG +  +R +F+ M+  K+VV+WN MI   A HG   EAL 
Sbjct: 344 HWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRR-KDVVAWNTMIIANAMHGNGKEALF 402

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           LF  M   +V P  +TF  VLS C+H+ LVEEG Q F SM  ++ +EP   H++ +VDI 
Sbjct: 403 LFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIY 462

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
            R GRL +A   I+GMP EP  + WGALL ACRV+ NVELA+++A+ L ++EP N   YV
Sbjct: 463 SRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYV 522

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            L+N+      W +A++VR+LMK   I K  G SW+
Sbjct: 523 SLFNILVTAKMWSEASQVRILMKERGITKTPGCSWL 558



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 176/415 (42%), Gaps = 102/415 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS----RG---------SGFLEE 47
           +I  Y K + +  AR++FD++  RDVVSW  + S Y+      +G         SG    
Sbjct: 119 LIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPN 178

Query: 48  ARYLFDIMPE-----------------------RDCVTWNTVISGYAKTGEMEEALRLFN 84
              +  I+P                         +    + ++S YAK   + EA  +F+
Sbjct: 179 PMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFD 238

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDE 140
            MP R+VVSWN +++ + +N +       F +M       D A+ +A++ G ++NG  +E
Sbjct: 239 LMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEE 298

Query: 141 AA---RVLVKCGSR------------CDGGEDL------------------VRAYNTLIV 167
           A    R + K G +            C   E+L                  + +   L+ 
Sbjct: 299 AVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLY 358

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y + G +  +R +FD +             ++++V+WN+MI+  A  G+   A  +F++
Sbjct: 359 MYAKCGDLNLSRNVFDMMR------------RKDVVAWNTMIIANAMHGNGKEALFLFDK 406

Query: 228 ML----ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIG 278
           ML    + ++ ++  ++SG  H   +EE   +F  M       PD   ++ +V  Y++ G
Sbjct: 407 MLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAG 466

Query: 279 NLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYE----GAIKLFIQMQVEGEKP 328
            L  A  F + MP +   S W +++A C   K+ E     A KLF   ++E   P
Sbjct: 467 RLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLF---EIEPNNP 518



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 4/234 (1%)

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
            +G+   A   F  +PQ +  + +++I+   T+     AIK++  +Q  G KPD   F +
Sbjct: 24  NVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLA 83

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
                +   D     ++H   T+  V+ DV + NALI  Y +C  +  AR +F+++ +++
Sbjct: 84  AAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDL-VVR 142

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           +VVSW ++       GF  + +++F+ M    V P  +T  S+L ACA    ++ G++  
Sbjct: 143 DVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKE-I 201

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
                 +G+   +   ++LV +  +   + +A  +   MP   D   W  +L A
Sbjct: 202 HGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNGVLTA 254


>gi|302754270|ref|XP_002960559.1| hypothetical protein SELMODRAFT_73342 [Selaginella moellendorffii]
 gi|300171498|gb|EFJ38098.1| hypothetical protein SELMODRAFT_73342 [Selaginella moellendorffii]
          Length = 578

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 177/553 (32%), Positives = 297/553 (53%), Gaps = 40/553 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y +   +A+A+ +FD + Q  + SWN++ + Y  +   G L+ A  LFD+MP RD 
Sbjct: 60  LIDKYGRFGCVAEAKLVFDAIAQPGIHSWNIITAAYARN---GHLDHAARLFDVMPRRDV 116

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W +++SG+++    EEA+R+F SMP  +VV+ N  I+ + Q G + +A+E F RM  R
Sbjct: 117 VSWTSLLSGFSQYNCPEEAIRVFLSMPQWDVVACNPAIAAYAQYGHIFDAVEIFARMSYR 176

Query: 121 DSASLSALVSGLIQNGELDEAARVL-VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           D AS +A+++         E+++VL V   S      D + + NT++      G +E A+
Sbjct: 177 DIASWNAILAAY------SESSQVLNVNAFSALMPMWDAI-STNTVLTANATAGYLERAK 229

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            +FD+             F+ + V+WN+MI  Y   GD+ + + IF+ M  R + SW+TM
Sbjct: 230 CIFDR-----------SSFRDDTVAWNAMIWAYVSNGDLQTGKAIFDSMPRRGSSSWDTM 278

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           I+ +    ++  AS   VK+P    L+W ++++G+AQ   L+ A+  F  M Q+N VSWN
Sbjct: 279 IAAFAQGGEISLASETLVKIPRSSVLSWTSLLAGHAQATELDKAMAVFHAMKQRNDVSWN 338

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           +++A      + E A  +F +M   G          I S ++ +V L     +     K 
Sbjct: 339 AVLAAYAQAGEIEDARAIFAKMPQLG----------IASWAAIVVALVRNRDLAS--AKA 386

Query: 360 VIPDVPIN-----NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
               +P +     N L+  YA  G + +A  +F  M + KN  SW A++  CA +    +
Sbjct: 387 AFDGMPEHDVFAWNCLLRAYASNGFVADALDLFSRMTV-KNPASWAAVLASCAYNNMGRD 445

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           A+ LF+ M      P    F +VL+ C HAG++EEGR++F ++   YG+ P +EH++ +V
Sbjct: 446 AVRLFRLMVLDGHRPDGTAFSAVLTGCGHAGMLEEGRRYFWAISESYGVTPAVEHYSCVV 505

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           +++GR  RL DA +L+  MP  P  + W  LLG   +  +V  A+ AAE + ++ P   +
Sbjct: 506 NLLGRSRRLADAEELVDSMPLCPQVSTWSVLLGVAGISGDVRRAERAAEEIARLSPCAHS 565

Query: 535 PYVLLYNMYADVG 547
           PYVLL N+ +  G
Sbjct: 566 PYVLLSNVLSSDG 578



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 183/442 (41%), Gaps = 85/442 (19%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           N+V+ N +I  Y + G V  A+ +F+ + +    SWN + + Y     ++ A+ LF  MP
Sbjct: 54  NLVA-NLLIDKYGRFGCVAEAKLVFDAIAQPGIHSWNIITAAYARNGHLDHAARLFDVMP 112

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             D ++W +++SG++Q    E A+  F  MPQ ++V+ N  IA          A+++F +
Sbjct: 113 RRDVVSWTSLLSGFSQYNCPEEAIRVFLSMPQWDVVACNPAIAAYAQYGHIFDAVEIFAR 172

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAI 380
           M       D  ++++IL+  S    +   + ++       + D    N ++T  A  G +
Sbjct: 173 MSYR----DIASWNAILAAYSESSQV---LNVNAFSALMPMWDAISTNTVLTANATAGYL 225

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHG------------------------------ 410
             A+ IF+      + V+WNAMI    S+G                              
Sbjct: 226 ERAKCIFDRSSFRDDTVAWNAMIWAYVSNGDLQTGKAIFDSMPRRGSSSWDTMIAAFAQG 285

Query: 411 ----FATEAL----------------------ELFKSMRSFKVLPTY--ITFISVLSACA 442
                A+E L                      EL K+M  F  +     +++ +VL+A A
Sbjct: 286 GEISLASETLVKIPRSSVLSWTSLLAGHAQATELDKAMAVFHAMKQRNDVSWNAVLAAYA 345

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
            AG +E+ R  F  M  + GI      +A++V  + R+  L  A     GMP E D   W
Sbjct: 346 QAGEIEDARAIFAKM-PQLGIAS----WAAIVVALVRNRDLASAKAAFDGMP-EHDVFAW 399

Query: 503 GALLGACRVHNNVELAQVAAEAL-----MKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
             LL A   +  V      A+AL     M V+   S   VL    Y ++GR D     RL
Sbjct: 400 NCLLRAYASNGFV------ADALDLFSRMTVKNPASWAAVLASCAYNNMGR-DAVRLFRL 452

Query: 558 LMKSNNIKKPTGYSWVDFSPCG 579
           ++   +    T +S V  + CG
Sbjct: 453 MVLDGHRPDGTAFSAV-LTGCG 473


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 199/636 (31%), Positives = 325/636 (51%), Gaps = 89/636 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMP--QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE- 57
           +++ Y K   +A AR +FD MP   RD+VSW  M S    SR     E  R   + + E 
Sbjct: 90  LLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCL--SRNGAEAEALRLFGETLEEG 147

Query: 58  ------------RDCVT--------------------WNT-------VISGYAKTGEMEE 78
                       + C                      W T       +I  +AK G++  
Sbjct: 148 LLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVA 207

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQ 134
             R+F+ +  R VV W  +I+ + Q+G    A+E F  M       D  +LS+++S   +
Sbjct: 208 MRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTE 267

Query: 135 NGEL---DEAARVLVKCGSRCDG--GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
            G      +   + ++ G   D      LV  Y     G      +  AR++F+++P   
Sbjct: 268 LGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQS----LHNAREVFNRMP--- 320

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI-FEQMLER----DTFSWNTMISGYI 244
                    K N+++W +++  Y + G   +   I F +ML      +  ++++M+    
Sbjct: 321 ---------KHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACA 371

Query: 245 HVLDMEEASNLF---VKMPHPD-TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           ++ D +    +    VK    D  +  NA+VS YA+ G++E A   F ++ +KN+VS++ 
Sbjct: 372 NLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSG 431

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKP--DRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
                  N D +G    +   Q+E  +      TF S++S ++ +  L  G ++H +  K
Sbjct: 432 -------NLDGDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLK 484

Query: 359 TVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
                D  I N+L++MY+RCG +V+A  +F+EM    NV+SW +MI G A HG+A  ALE
Sbjct: 485 AGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMND-HNVISWTSMISGLAKHGYAARALE 543

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           LF  M +  V P  +T+I+VLSAC+HAGLV+EG++HF+ M   +G+ PR+EH+A +VD++
Sbjct: 544 LFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLL 603

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
           GR G +EDA+D I  MP + D  VW  LLGAC+ HNN+++ ++AA  ++++EP++  PYV
Sbjct: 604 GRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYV 663

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           LL N+YA+ G WD    +R LM+  N+ K  G SW+
Sbjct: 664 LLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWM 699



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 130/472 (27%), Positives = 218/472 (46%), Gaps = 70/472 (14%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPA--RNVVSWNAMISGFLQNGDVANAIEFF 114
           E D V  N++++ Y+K   +  A  +F+ MP   R++VSW AM S   +NG  A A+  F
Sbjct: 81  ETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLF 140

Query: 115 DRMPGRDSASLSALVSGLIQNG-------ELDEAARVLVKCGSRCDG--------GEDLV 159
                        L  GL+ N        +   A+ +    G    G        G D V
Sbjct: 141 GE----------TLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTD-V 189

Query: 160 RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVV 219
                LI  + + G +   R++FD +            F+R +V W  +I  YA++G   
Sbjct: 190 SVGCALIDMFAKNGDLVAMRRVFDGL------------FERTVVVWTLLITRYAQSGYSD 237

Query: 220 SAREIFEQMLER----DTFSWNTMISGYIHVLDM---EEASNLFVKMP-HPDTLTWNAMV 271
            A E+F  MLE     D ++ ++M+S    +      ++  +L +++    D+     +V
Sbjct: 238 EAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLV 297

Query: 272 SGYAQIGN---LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK-LFIQMQVEGEK 327
             YA+  N   L  A + F RMP+ N+++W ++++G       +  +  LF +M  EG +
Sbjct: 298 DMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIR 357

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARII 386
           P+  T+SS+L   + + D   G QIH    K+ + D+  + NAL++MYA  G+I EAR  
Sbjct: 358 PNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHA 417

Query: 387 FEEMKLLKNVVSWNAMIGGCAS----HGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           F+++   KN+VS++  + G         +  E +EL  S           TF S++SA A
Sbjct: 418 FDQL-YEKNMVSFSGNLDGDGRSNTYQDYQIERMELGIST---------FTFGSLISAAA 467

Query: 443 HAGLVEEG-RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
             G++ +G R H  S+   +G +  I +  SLV +  R G L DA  +   M
Sbjct: 468 SVGMLTKGQRLHALSLKAGFGSDRAIGN--SLVSMYSRCGYLVDACQVFDEM 517



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 6/167 (3%)

Query: 345 DLHLG--MQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKL-LKNVVSWN 400
           D+HLG  +Q H + T +++  D  + N+L+T+Y++C A+  AR +F+ M + L+++VSW 
Sbjct: 62  DIHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWT 121

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           AM    + +G   EAL LF       +LP   T  +   AC  + L          +V +
Sbjct: 122 AMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFK 181

Query: 461 YGI-EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            G     +    +L+D+  ++G L     +  G+ FE    VW  L+
Sbjct: 182 LGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGL-FERTVVVWTLLI 227


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 186/588 (31%), Positives = 299/588 (50%), Gaps = 84/588 (14%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR---NVVSWNAMISGFLQNGDVANAIEF 113
           E +    N +++ Y++ G +EEA  +F+ +  R   +V+SWN+++S  +++ +   A++ 
Sbjct: 194 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 253

Query: 114 FDRM-------PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE-DLVRAYNTL 165
           F +M       P  + + + ++V+ L   G L    +     G+    G    V   N L
Sbjct: 254 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNAL 313

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           I  Y + G +E A K+F+ +            FK ++VSWN+M+  Y+++G+  +A E+F
Sbjct: 314 IDAYAKCGLMENAVKVFNMM-----------EFK-DVVSWNAMVAGYSQSGNFEAAFELF 361

Query: 226 EQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKM------PH-------------- 261
           + M    +  D  +W  +I+GY       EA NLF +M      P+              
Sbjct: 362 KNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASL 421

Query: 262 -----------------------------PDTLTWNAMVSGYAQIGNLELALDFFKRMP- 291
                                         D + +NA++  Y++  + + A   F  +P 
Sbjct: 422 GAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPL 481

Query: 292 -QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE--GEKPDRHTFSSILSMSSGIVDLHL 348
            ++N+V+W  MI G     D   A+KLF++M  E  G  P+ +T S IL   + +  + +
Sbjct: 482 EERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRI 541

Query: 349 GMQIHQMVTKTVIPDVP---INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
           G QIH  V +    +     + N LI MY++CG +  AR +F+ M   K+ +SW +M+ G
Sbjct: 542 GKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQ-KSAISWTSMMTG 600

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
              HG  +EAL++F  MR    +P  ITF+ VL AC+H G+V++G  +F SM  +YG+ P
Sbjct: 601 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTP 660

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
           R EH+A  +D++ R GRL+ A   +K MP EP   VW ALL ACRVH+NVELA+ A   L
Sbjct: 661 RAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 720

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +++  EN   Y L+ N+YA  GRW D   +R LMK + IKK  G SWV
Sbjct: 721 VEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWV 768



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 151/551 (27%), Positives = 240/551 (43%), Gaps = 94/551 (17%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRD 121
           V++ Y   G  + AL +   +     V WN +I   ++ G + +AI    RM       D
Sbjct: 102 VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPD 161

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSR------CDGGEDLVRAYNTLIVGYGQRGRV 175
             +L  ++      GEL        +CGS       C+G E  V   N L+  Y + G +
Sbjct: 162 HFTLPHVLKAC---GELPS-----YRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSL 213

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML------ 229
           EEA  +FD+I     RG  +V      +SWNS++  + K+ +  +A ++F +M       
Sbjct: 214 EEASMIFDEIT---QRGIDDV------ISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEK 264

Query: 230 ---ER------------------------------------DTFSWNTMISGYIHVLDME 250
              ER                                    D F  N +I  Y     ME
Sbjct: 265 PTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLME 324

Query: 251 EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL----VSWNSMIAGCE 306
            A  +F  M   D ++WNAMV+GY+Q GN E A + FK M ++N+    V+W ++IAG  
Sbjct: 325 NAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYS 384

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI----- 361
                  A+ LF QM   G  P+  T  S+LS  + +     G +IH    K  +     
Sbjct: 385 QRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDN 444

Query: 362 ------PDVPINNALITMYARCGAIVEARIIFEEMKL-LKNVVSWNAMIGGCASHGFATE 414
                  D+ + NALI MY++C +   AR IF+++ L  +NVV+W  MIGG A +G + +
Sbjct: 445 DFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSND 504

Query: 415 ALELFKSMRS--FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
           AL+LF  M S  + V P   T   +L ACAH   +  G+Q    ++  +  E      A+
Sbjct: 505 ALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVAN 564

Query: 473 -LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE-- 529
            L+D+  + G ++ A  +   M  +     W +++    +H     A    + + K    
Sbjct: 565 CLIDMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV 623

Query: 530 PENSTPYVLLY 540
           P++ T  V+LY
Sbjct: 624 PDDITFLVVLY 634



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 184/431 (42%), Gaps = 58/431 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I  Y K   M  A K+F+ M  +DVVSWN M++GY     SG  E A  LF  M +   
Sbjct: 313 LIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY---SQSGNFEAAFELFKNMRKENI 369

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
             D VTW  VI+GY++ G   EAL LF  M               + +G + N +     
Sbjct: 370 PLDVVTWTAVIAGYSQRGCSHEALNLFRQM---------------IFSGSLPNCVTIISV 414

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCD---GGEDL-VRAYNTLIVGYGQR 172
           +     ASL A   G       +  A  L  C    D   GGED  +  YN LI  Y + 
Sbjct: 415 LSA--CASLGAFSQG------TEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKC 466

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
              + AR +FD IP+           +RN+V+W  MI  +A+ GD   A ++F +M+   
Sbjct: 467 RSFKAARSIFDDIPLE----------ERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 516

Query: 233 --------TFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNL 280
                   T S   M   ++  + + +  + +V   H          N ++  Y++ G++
Sbjct: 517 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDV 576

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           + A   F  M QK+ +SW SM+ G   +     A+ +F +M+  G  PD  TF  +L   
Sbjct: 577 DTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYAC 636

Query: 341 S--GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
           S  G+VD  L           + P        I + AR G + +A    ++M +    V 
Sbjct: 637 SHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVV 696

Query: 399 WNAMIGGCASH 409
           W A++  C  H
Sbjct: 697 WVALLSACRVH 707


>gi|242038427|ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
 gi|241920462|gb|EER93606.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
          Length = 752

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 181/602 (30%), Positives = 316/602 (52%), Gaps = 69/602 (11%)

Query: 28  SWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP 87
           +++ M+S ++ +   G +  AR LFD MPE+  V++ T++    K G +++A++L+   P
Sbjct: 156 TYDFMVSEHVKA---GDIASARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCP 212

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDEAAR 143
             +V  + AMI+GF++N    +A   F +M       +  +L  ++   +  GE D A  
Sbjct: 213 LYSVAFFTAMIAGFVRNELHKDAFPVFRKMLRCSVRPNVVTLICVIKACVGAGEFDLAMG 272

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN------------CDR 191
           V V    + +  E  +  +N+LI  Y + G    A ++FD + V              + 
Sbjct: 273 V-VGLAIKWNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAEL 331

Query: 192 G--EGNVRF-----KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMI 240
           G  EG  R      +RN VSW+++I  + + GD   A +++ QML      +   +++++
Sbjct: 332 GDLEGARRVLDAMPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFSSVL 391

Query: 241 SGYIHVLDME-----------------------------------EASNLFVKMPHPDTL 265
           S    + D+                                    +A  +F  +P  +T+
Sbjct: 392 SACATLHDLRGGTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPEKNTV 451

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
            WN+++SGY+  G +  A + FK+MP +N  SWN+MI+G   N+ +  A+  F  M   G
Sbjct: 452 CWNSLISGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASG 511

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEAR 384
           + P   T SS+L   + +  L +G  +H  + K  I D + +  AL  MYA+ G +  +R
Sbjct: 512 QIPGEITLSSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSR 571

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F +M   KN ++W AM+ G A +GFA E++ LF++M + ++ P   TF+++L AC+H 
Sbjct: 572 RMFYQMPE-KNNITWTAMVQGLAENGFAEESILLFENMIANRIAPNEHTFLAILFACSHC 630

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           GLVE+   +F++M   +GI P+ +H+  +VD++ R GRL +A +L+  +P + D + W +
Sbjct: 631 GLVEQAIHYFETM-QAHGIPPKDKHYTCMVDVLARAGRLPEAEELLMKVPSKLDTSSWSS 689

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           LL AC  + N E+ + AA+ L ++E +N+  YVLL NMYA  G+W DA E R+LM+   +
Sbjct: 690 LLSACNTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGPRL 749

Query: 565 KK 566
           KK
Sbjct: 750 KK 751



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 146/354 (41%), Gaps = 72/354 (20%)

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS----------------------- 300
           + T++ MVS + + G++  A   F  MP+K++VS+ +                       
Sbjct: 154 SFTYDFMVSEHVKAGDIASARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCPL 213

Query: 301 --------MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
                   MIAG   N+ ++ A  +F +M     +P+  T   ++    G  +  L M +
Sbjct: 214 YSVAFFTAMIAGFVRNELHKDAFPVFRKMLRCSVRPNVVTLICVIKACVGAGEFDLAMGV 273

Query: 353 HQMVTKTVI--PDVPINNALITMYARCGAIVEARIIFEEMKLL----------------- 393
             +  K  +    + ++N+LIT+Y R G    A  +F++M++                  
Sbjct: 274 VGLAIKWNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAELGD 333

Query: 394 -------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
                        +N VSW+ +I      G + EAL+L+  M +    P    F SVLSA
Sbjct: 334 LEGARRVLDAMPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFSSVLSA 393

Query: 441 CAHAGLVEEG-RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           CA    +  G R H  ++  + G    +   +SL+D+  +  +  DA  +   +P E + 
Sbjct: 394 CATLHDLRGGTRIHANAL--KMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLP-EKNT 450

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKVEP-ENSTPYVLLYNMYADVGRWDDA 552
             W +L+     +  +    V AE L K  P  N+  +  + + YA+  R+ DA
Sbjct: 451 VCWNSLISGYSWNGKM----VEAEELFKKMPARNAASWNTMISGYAENRRFGDA 500


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 167/500 (33%), Positives = 265/500 (53%), Gaps = 42/500 (8%)

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN 135
           +  A RLF  +   +V  +N +I G   +   +NA++ F  M  R S +L    S     
Sbjct: 55  LHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMR-RKSVALPDSFSFAF-- 111

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
                    L+K  + C    + ++ +  L VGYG                         
Sbjct: 112 ---------LLKAAANCRALTNGLQLH-CLAVGYG------------------------- 136

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
                ++    ++I  YA+   +V AR++F++M+E +  +WN +++       +++A  +
Sbjct: 137 --LDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQV 194

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           F  MP  +  +WN M++GY + G L+LA + F +MP K+ VSW++MI G   N ++  A 
Sbjct: 195 FRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAF 254

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMY 374
             F +++ EG +P+  + + +LS  +       G  +H  V K+  +  + +NNALI  Y
Sbjct: 255 AFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTY 314

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           ++CG +  AR++F+ M L ++ VSW AMI G A HG+  EA+ LF  M    + P  ITF
Sbjct: 315 SKCGNLDMARLVFDNM-LRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITF 373

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           IS+L AC+HAGLV+ G  +F  MVN YGIEP IEH+  +VD+ GR G+L+ A D +  MP
Sbjct: 374 ISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMP 433

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANE 554
             P+  VW  LLGAC +H N+ LA      L +++PENS  +VLL N+YA  G+W D   
Sbjct: 434 ISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAA 493

Query: 555 VRLLMKSNNIKKPTGYSWVD 574
           +R  M    +KK  G+S ++
Sbjct: 494 LRRSMTHQRLKKTPGWSMIE 513



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 181/378 (47%), Gaps = 37/378 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +IS Y +   +  ARK+FDEM + ++V+WN +++      G   +++A  +F  MP R+ 
Sbjct: 147 LISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEG---VKDAEQVFRCMPIRNL 203

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD--RMP 118
            +WN +++GY K GE++ A  +F  MP ++ VSW+ MI GF  NG+  +A  FF   R  
Sbjct: 204 TSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRRE 263

Query: 119 GR--DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           G   +  SL+ ++S   Q G   E  R+L     +  G   ++   N LI  Y + G ++
Sbjct: 264 GMRPNEVSLTGVLSACAQAGAF-EFGRILHGFVEK-SGFLQIISVNNALIDTYSKCGNLD 321

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----D 232
            AR +FD +             +R+ VSW +MI   A  G    A  +F +M E     D
Sbjct: 322 MARLVFDNM------------LRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPD 369

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFF 287
           + ++ +++    H   ++   + F +M +     P    +  MV  Y + G L+ A DF 
Sbjct: 370 SITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFV 429

Query: 288 KRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMSSG--- 342
            +MP   N + W +++  C  + +   A ++  Q+ +++ E    H   S +   +G   
Sbjct: 430 CQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWK 489

Query: 343 -IVDLHLGMQIHQMVTKT 359
            +  L   M  HQ + KT
Sbjct: 490 DVAALRRSMT-HQRLKKT 506



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 154/354 (43%), Gaps = 53/354 (14%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
            T+IS YA+   +  A ++F+ M   N+V+WNA+++   +   V +A + F  MP R+  
Sbjct: 145 TTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLT 204

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S + +++G  + GEL  A  V +K   + D       +++T+IVG+   G   +A   F 
Sbjct: 205 SWNIMLAGYTKAGELQLAREVFMKMPLKDD------VSWSTMIVGFAHNGNFNDAFAFFR 258

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW-----NT 238
           ++     R EG    + N VS   ++   A+AG     R I    +E+  F       N 
Sbjct: 259 EV-----RREG---MRPNEVSLTGVLSACAQAGAFEFGR-ILHGFVEKSGFLQIISVNNA 309

Query: 239 MISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
           +I  Y    +++ A  +F  M     ++W AM++G A  G  E A+  F  M + N+   
Sbjct: 310 LIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNI--- 366

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMV 356
                                       KPD  TF SIL   S  G+VDL        + 
Sbjct: 367 ----------------------------KPDSITFISILYACSHAGLVDLGCSYFSRMVN 398

Query: 357 TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           T  + P +     ++ +Y R G + +A     +M +  N + W  ++G C+ HG
Sbjct: 399 TYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHG 452


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 191/627 (30%), Positives = 312/627 (49%), Gaps = 73/627 (11%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE------- 57
           ++ R E+  AR +FD++P+  VV WN+MI  Y     SG  +++ YL+  M +       
Sbjct: 51  HISRNEIQLARHVFDQIPKPSVVLWNMMIRTY---AWSGPFQQSIYLYLHMLQLGVTPTN 107

Query: 58  -------RDCVTWNTVISG-------------------------YAKTGEMEEALRLFNS 85
                  + C +   +  G                         YAK G + +A  LFNS
Sbjct: 108 FTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNS 167

Query: 86  MPA--RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD 139
           +    R++V+WNAMI+ F  +   A  I    +M       +S++L +++  + Q   L 
Sbjct: 168 ISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALH 227

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           +   +        +   D V     L+  Y +   +  ARK+F+ +             K
Sbjct: 228 QGKAIHAYYIR--NFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVN------------K 273

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQML-----ERDTFSWNTMISGYIHVLDMEEASN 254
           +N V W++MI  Y     +  A  +++ ML          +  TM+     + D++    
Sbjct: 274 KNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKK 333

Query: 255 LFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
           L   M       DT   N+++S YA+ G ++ A+ F   M  K+ VS++++I+GC  N  
Sbjct: 334 LHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGY 393

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNA 369
            E A+ +F QMQ  G  P   T  ++L   S +  L  G   H   V +    D  I NA
Sbjct: 394 AEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNA 453

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           +I MY++CG I  +R IF+ M+  ++++SWN MI G   HG   EAL LF+ +++  + P
Sbjct: 454 IIDMYSKCGKITISREIFDRMQN-RDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKP 512

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
             +T I+VLSAC+H+GLV EG+  F SM   + I+PR+ H+  +VD++ R G L++A   
Sbjct: 513 DDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTF 572

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
           I+ MPF P+  +WGALL ACR H N+E+ +  ++ +  + PE +  +VL+ N+Y+ VGRW
Sbjct: 573 IQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRW 632

Query: 550 DDANEVRLLMKSNNIKKPTGYSWVDFS 576
           DDA  +R + + +  KK  G SWV+ S
Sbjct: 633 DDAAYIRSIQRHHGYKKSPGCSWVEIS 659



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 168/379 (44%), Gaps = 71/379 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS----SRGSGFLEEARYLFDIMP 56
           ++  Y K   +  ARK+F+ + +++ V W+ MI GY+     S      ++   ++ + P
Sbjct: 251 LLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNP 310

Query: 57  ---------------------------------ERDCVTWNTVISGYAKTGEMEEALRLF 83
                                            + D    N++IS YAK G M+ A+   
Sbjct: 311 TPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFL 370

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
           + M A++ VS++A+ISG +QNG    A+  F +M    S+ ++  +  +I    L   + 
Sbjct: 371 DEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQM---QSSGIAPYLETMI--ALLPACSH 425

Query: 144 VLVKCGSRCDGGEDLVRAY-------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
           +       C  G  +VR +       N +I  Y + G++  +R++FD++           
Sbjct: 426 LAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQ---------- 475

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA 252
              R+I+SWN+MI+ Y   G  V A  +F+++    L+ D  +   ++S   H   + E 
Sbjct: 476 --NRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEG 533

Query: 253 SNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCE 306
              F  M       P    +  MV   A+ GNL+ A  F +RMP   N+  W +++A C 
Sbjct: 534 KYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACR 593

Query: 307 TNKDYEGAIKLFIQMQVEG 325
           T+K+ E   ++  ++Q+ G
Sbjct: 594 THKNIEMGEQVSKKIQLLG 612


>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 655

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 203/628 (32%), Positives = 311/628 (49%), Gaps = 77/628 (12%)

Query: 5   YVKRREMAKARKLFDEMPQRDV--VSWNVMISGYISSRGSGFLEEARYLF------DIMP 56
           Y    E+  AR +FDE+P   +  ++W++MI  Y+S+   GF E+A  L+       + P
Sbjct: 45  YASCNEVELARHVFDEIPHPRINPIAWDLMIRAYVSN---GFAEKALDLYYKMLNSGVRP 101

Query: 57  ER---------------------------------DCVTWNTVISGYAKTGEMEEALRLF 83
            +                                 D      ++  YAK GE++ A+++F
Sbjct: 102 TKFTYPFVLKACAGLRAIEDGKLIHSHVKCSNFAADMYVCTALVDFYAKCGELDMAIKVF 161

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD--SASLSALVS---GLIQNGEL 138
           + MP R++V+WNAMISGF  +  + + I  F  M   D  S +LS +V     L + G L
Sbjct: 162 DEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRAGAL 221

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
            E   V   C +R     DLV     L V Y +   +  AR++FD              F
Sbjct: 222 REGKAVHGYC-TRMGFSNDLVVKTGILDV-YAKSKCIIYARRVFDS------------DF 267

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT------MISGYIHVLDMEEA 252
           K+N V+W++MI  Y +   +  A E+F QML     +  T      ++ G     D+   
Sbjct: 268 KKNEVTWSAMIGGYVENEMIKEAGEVFLQMLVNADMAMVTPVAIGLILMGCARFGDLSGG 327

Query: 253 SNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             +           D    N ++S YA+ G+L  A   F  +  K++VS+NS+I+GC  N
Sbjct: 328 RCVHCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVEN 387

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPIN 367
              E + +LF QM+  G +PD  T   IL+  S +  L  G   H   V      +  I 
Sbjct: 388 CRAEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSIC 447

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           NAL+ MY +CG +  A+ +F+ M   +++VSWN M+ G   HG   EAL LF SM+   V
Sbjct: 448 NALMDMYTKCGKLYVAKRVFDTMHK-RDIVSWNTMLFGFGIHGLGKEALSLFNSMQDTGV 506

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMV-NEYGIEPRIEHFASLVDIVGRHGRLEDA 486
            P  +T +++LSAC+H+GLV+EG+Q F SM   ++ + PR++H+  + D++ R G L++A
Sbjct: 507 HPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDHYNCMTDLLARAGYLDEA 566

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
            D +  MPFEPD  V G LL AC  + NVEL    ++  M+   E +   VLL N Y+  
Sbjct: 567 YDFVNKMPFEPDIRVLGTLLSACWTYKNVELGNEVSKK-MQSLGETTESLVLLSNTYSAA 625

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            RW+DA ++R+  K + + K  GYSWVD
Sbjct: 626 ERWEDAAKIRMTQKKSGLLKTPGYSWVD 653



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 195/472 (41%), Gaps = 145/472 (30%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGS----- 42
           ++  Y K  E+  A K+FDEMP+RD+V+WN MISG             ++  R S     
Sbjct: 144 LVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSDCLSP 203

Query: 43  ---------------GFLEEAR----YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
                          G L E +    Y   +    D V    ++  YAK+  +  A R+F
Sbjct: 204 NLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVF 263

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM-PGRDSASLSALVSGLI-----QNGE 137
           +S   +N V+W+AMI G+++N  +  A E F +M    D A ++ +  GLI     + G+
Sbjct: 264 DSDFKKNEVTWSAMIGGYVENEMIKEAGEVFLQMLVNADMAMVTPVAIGLILMGCARFGD 323

Query: 138 LD----------EAARVL------------VKCGSRCD--------GGEDLVRAYNTLIV 167
           L           +A  +L             K GS CD        G +D+V +YN+LI 
Sbjct: 324 LSGGRCVHCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIV-SYNSLIS 382

Query: 168 GYGQRGRVEEARKLFDKIPVNCDR-------------------GEGNV--------RFKR 200
           G  +  R EE+ +LF ++  +  R                   G G+          +  
Sbjct: 383 GCVENCRAEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAV 442

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY-IHVLDMEEASNLFVKM 259
           N    N+++  Y K G +  A+ +F+ M +RD  SWNTM+ G+ IH L  +EA +LF  M
Sbjct: 443 NTSICNALMDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLG-KEALSLFNSM 501

Query: 260 P----HPDTLT-------------------------------------WNAMVSGYAQIG 278
                HPD +T                                     +N M    A+ G
Sbjct: 502 QDTGVHPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDHYNCMTDLLARAG 561

Query: 279 NLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
            L+ A DF  +MP + ++    ++++ C T K+ E   ++  +MQ  GE  +
Sbjct: 562 YLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNVELGNEVSKKMQSLGETTE 613



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 9/173 (5%)

Query: 345 DLHLGMQIHQMVTKTVIP----DVPINNALITMYARCGAIVEARIIFEEMKLLK-NVVSW 399
           +L LG  IHQ + K  +      V +N  L  +YA C  +  AR +F+E+   + N ++W
Sbjct: 14  NLILGQIIHQHLLKRSLTLSSSTVLVN--LTRLYASCNEVELARHVFDEIPHPRINPIAW 71

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           + MI    S+GFA +AL+L+  M +  V PT  T+  VL ACA    +E+G+    S V 
Sbjct: 72  DLMIRAYVSNGFAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAIEDGKL-IHSHVK 130

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
                  +    +LVD   + G L+ A+ +   MP + D   W A++    +H
Sbjct: 131 CSNFAADMYVCTALVDFYAKCGELDMAIKVFDEMP-KRDIVAWNAMISGFSLH 182


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 179/520 (34%), Positives = 280/520 (53%), Gaps = 55/520 (10%)

Query: 66   VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
            ++S Y + G++  A +LF+ +P  N+  W  +     + G    A+  F  M        
Sbjct: 844  LMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKE----- 898

Query: 126  SALVSGLIQNGELDEAARVLVKCGSRCD--GGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
                 GL  N  +     +L  CG   D   GE++    +T+I+                
Sbjct: 899  -----GLRPNQFV--LPSILKACGHLSDRRTGENM----HTVIL---------------- 931

Query: 184  KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
                          F+ +    +++I  Y+K G V  A  +F+ ++++D    N M+SGY
Sbjct: 932  -----------KNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGY 980

Query: 244  IHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMP----QKNL 295
                 + EA BL  KM      P+ ++WN +++G++Q+G+  +  + F+ M     + ++
Sbjct: 981  AQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDV 1040

Query: 296  VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-Q 354
            VSW S+I+G   N         F +M  +G  P   T SS+L   + + +L  G +IH  
Sbjct: 1041 VSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGY 1100

Query: 355  MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
             +   V  DV + +AL+ MYA+CG I EA+I+F  M   +N V+WN++I G A+HG+  E
Sbjct: 1101 AMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPE-RNTVTWNSLIFGYANHGYCNE 1159

Query: 415  ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
            A+ELF  M        ++TF +VL+AC+HAG+VE G   F  M  +Y IEPR+EH+A +V
Sbjct: 1160 AIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMV 1219

Query: 475  DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
            D++GR G+L +A DLIK MP EPDK VWGALLGACR H N+ELA+VAAE L ++EPE+  
Sbjct: 1220 DLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPG 1279

Query: 535  PYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
              +LL N+YAD GRW +A +++ +MK     K  G SW++
Sbjct: 1280 SSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 168/530 (31%), Positives = 287/530 (54%), Gaps = 39/530 (7%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------ 117
            ++I  YAK GE++ A+R+++ M + +  + N +IS + +NG    A + F ++      
Sbjct: 152 TSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTR 211

Query: 118 PGRDSASLSALVSGLI---QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
           P   + S    V G I   Q G+   A  V ++  S    G       N L+  Y + G 
Sbjct: 212 PNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVG-------NALLTLYSKCGM 264

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LE 230
           +EEA  +F+ +             +RNI+SW + I  + + GD   A + F  M    +E
Sbjct: 265 MEEAEIVFESLR------------QRNIISWTASINGFYQHGDFKKALKQFSMMRESGIE 312

Query: 231 RDTFSWNTMISGYIHVLDMEEA----SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
            + F+++ +++    V D  +     + +  K          A++  Y+ +G ++ A   
Sbjct: 313 PNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQ 372

Query: 287 FKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
           FK+M +  + VSWN++IAG   N+  E A++ F +M  E    +  T+S+I    S    
Sbjct: 373 FKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPS 432

Query: 346 LHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           L   +QIH +++   V  ++ + ++LI  Y +CG++  A  +F ++    +VVSWN++I 
Sbjct: 433 LATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISD-ADVVSWNSIIK 491

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
             + +G   +A+ L + M      PT  TF++VLSAC+H+GLV+EG++ FKSMV +Y I+
Sbjct: 492 AYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQ 551

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           P   H + +VDI+GR G+LE+A+D IK +  +P  ++W  LL ACR ++N+++A+  AE 
Sbjct: 552 PEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEK 611

Query: 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           ++ +EP ++T YV L NMYA+VGRW DA   R LM+   I K  G SW++
Sbjct: 612 ILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIE 661



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 136/266 (51%), Gaps = 3/266 (1%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D     +++  YA+ G ++ A+  + +M   +  + N +I+    N  +  A ++F+Q+ 
Sbjct: 147 DEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIG 206

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIV 381
             G +P+ +T+S++L++   I  +  G Q+H  V K   + +  + NAL+T+Y++CG + 
Sbjct: 207 NMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMME 266

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
           EA I+FE ++  +N++SW A I G   HG   +AL+ F  MR   + P   TF  VL++C
Sbjct: 267 EAEIVFESLR-QRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASC 325

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
                  +GR  F + V + G+   +    +++D+    G +++A    K M        
Sbjct: 326 GCVKDFIDGRM-FHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVS 384

Query: 502 WGALLGACRVHNNVELAQVAAEALMK 527
           W AL+    ++  +E A  A   ++K
Sbjct: 385 WNALIAGYVLNEKIEKAMEAFCRMVK 410



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 194/465 (41%), Gaps = 81/465 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEA------------ 48
           +I  Y K  E+  A +++D+M   D  + N +IS Y  +   GF  +A            
Sbjct: 154 LIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARN---GFFVQAFQVFMQIGNMGT 210

Query: 49  ---RYLFDIMPE------------------------RDCVTWNTVISGYAKTGEMEEALR 81
               Y +  M                           +    N +++ Y+K G MEEA  
Sbjct: 211 RPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEI 270

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           +F S+  RN++SW A I+GF Q+GD   A++ F  M  R+S          I+  E   +
Sbjct: 271 VFESLRQRNIISWTASINGFYQHGDFKKALKQFSMM--RESG---------IEPNEFTFS 319

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR- 200
             VL  CG   D  +   R ++T ++  G    V     + D      +  E   +FK+ 
Sbjct: 320 I-VLASCGCVKDFIDG--RMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQM 376

Query: 201 ----NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMI---SGYIHVLDM 249
               + VSWN++I  Y     +  A E F +M++ D     F+++ +    S +  +   
Sbjct: 377 GRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATT 436

Query: 250 EEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
            +  +  +K      L   ++++  Y Q G+LE A+  F ++   ++VSWNS+I     N
Sbjct: 437 VQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQN 496

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM-QIHQMVTKTVIPDVPIN 367
            D   AI L  +M  EG KP   TF ++LS  S     H G+ Q  Q   K+++ D  I 
Sbjct: 497 GDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACS-----HSGLVQEGQEFFKSMVQDYSIQ 551

Query: 368 ------NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
                 + ++ +  R G +  A    +++ +      W  ++  C
Sbjct: 552 PEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAAC 596



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/462 (22%), Positives = 198/462 (42%), Gaps = 99/462 (21%)

Query: 1    MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------- 53
            ++S Y +  +++ ARKLFD++P  ++  W ++++G  + R  GF EEA   F        
Sbjct: 844  LMSFYTECGQLSNARKLFDKIPNTNIRRW-IVLTGACARR--GFYEEALSAFSEMQKEGL 900

Query: 54   -----IMP---------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                 ++P                           E D    + +I  Y+K G +E+A R
Sbjct: 901  RPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACR 960

Query: 82   LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
            +F+ +  +++V  NAM+SG+ Q+G V  A++   +M       +  S + L++G  Q G+
Sbjct: 961  VFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGD 1020

Query: 138  ---LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
               + E  R++       +G E  V ++ ++I G+ Q     E    FD      D+G  
Sbjct: 1021 KSMVSEVFRLMTA-----NGVEPDVVSWTSVISGFVQNFHNHEG---FDAFKEMLDQG-- 1070

Query: 195  NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDME 250
               F  + V+ +S++       ++   +EI    +    E+D +  + ++  Y     + 
Sbjct: 1071 ---FCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYIS 1127

Query: 251  EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
            EA  LF  MP  +T+TWN+++ GYA  G    A++                         
Sbjct: 1128 EAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIE------------------------- 1162

Query: 311  YEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINN 368
                  LF QM+    K D  TF+++L+  S  G+V+L   +         + P +    
Sbjct: 1163 ------LFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYA 1216

Query: 369  ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
             ++ +  R G + EA  + + M +  +   W A++G C +HG
Sbjct: 1217 CMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHG 1258


>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
 gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
          Length = 772

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 200/634 (31%), Positives = 311/634 (49%), Gaps = 79/634 (12%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYL------------- 51
           Y +   +  A KLF+EM +RDVV+W  ++SG + +   G  +  RYL             
Sbjct: 159 YARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECG--DGLRYLVEMVRLAGDGKAR 216

Query: 52  ---------------FDIMPERDCVTWNTVISG--------------YAKTGEMEEALRL 82
                           D +    C+    V  G              Y+K    E+A  L
Sbjct: 217 PNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKCHSTEDACSL 276

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGEL 138
           F  +P ++VVSW ++I  +   G +  A+E F  M       D   +S L+SGL  +G +
Sbjct: 277 FPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNV 336

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
                       R  G  D V   N LI  YG+   V+ A ++F             +  
Sbjct: 337 HGGKAFHAVIMKRNFG--DNVLVGNALISMYGKFELVDNAGRVF------------RLLH 382

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW----NTMISGYIHVLDMEEA-- 252
           +R+  SWN MI+ Y KAG  V   E++ +M  RDT+ +    N+++S       + E   
Sbjct: 383 QRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELRL 442

Query: 253 --SNLFVKMPH---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCE 306
             S     + H    D+   N ++  Y + G  + A   F     K ++V+WN++I+   
Sbjct: 443 GRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYA 502

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVP 365
                  A+ L+ QM  EG  P+  T  +++S  + +V L  G +IH  V +     DV 
Sbjct: 503 HLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVS 562

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           IN ALI MYA+CG +  AR IF+ M L  +VV+WN MI G   HG A +ALELF  M   
Sbjct: 563 INTALIDMYAKCGQLGTARRIFDSM-LQHDVVAWNVMISGYGMHGEAKQALELFGKMEGG 621

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            + P  +TF+++LSAC H+GL+EEGRQ F  M  +Y +EP ++H+A +VD++G+ G L++
Sbjct: 622 SIKPNGVTFLAILSACCHSGLLEEGRQLFTRM-GKYSLEPNLKHYACMVDLLGKSGHLQE 680

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A D++  MP EPD  +WG LL AC++H++ E+    A+     + EN   Y+L+ N Y  
Sbjct: 681 AEDMVLAMPVEPDGGIWGTLLSACKLHDDFEMGLRIAKKAFASDAENEGYYILISNSYGS 740

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVDFSPCG 579
             +WD+  ++R  MK++ ++K  G+S VD+  CG
Sbjct: 741 AKKWDEIEKLREAMKNHGVQKGAGWSAVDY--CG 772



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 197/466 (42%), Gaps = 75/466 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           + S Y K      A  LF E+P++DVVSW  +I  Y      G + EA  LF  M E   
Sbjct: 260 LFSMYSKCHSTEDACSLFPELPEKDVVSWTSLIGIYC---WRGLIREAMELFQEMMESGL 316

Query: 59  -------------------------------------DCVTWNTVISGYAKTGEMEEALR 81
                                                + +  N +IS Y K   ++ A R
Sbjct: 317 QPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGR 376

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS----ASLSALVSGLIQNGE 137
           +F  +  R+  SWN MI G+ + G     +E +  M  RD+       ++LVS +     
Sbjct: 377 VFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSR 436

Query: 138 LDE--AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           L E    R    C S     ++     N LI  YG+ G+ + A K+F           G 
Sbjct: 437 LVELRLGRS-AHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIF-----------GL 484

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEE 251
            + K ++V+WN++I  YA  G   +A  +++QML      ++ +  T+IS   +++ +E 
Sbjct: 485 AKLKGDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALER 544

Query: 252 ASNLFVKMPHPDTLTWN-------AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
              +     +   + W+       A++  YA+ G L  A   F  M Q ++V+WN MI+G
Sbjct: 545 GEKIH---SYVKEMGWDYDVSINTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISG 601

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPD 363
              + + + A++LF +M+    KP+  TF +ILS       L  G Q+   + K ++ P+
Sbjct: 602 YGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRMGKYSLEPN 661

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           +     ++ +  + G + EA  +   M +  +   W  ++  C  H
Sbjct: 662 LKHYACMVDLLGKSGHLQEAEDMVLAMPVEPDGGIWGTLLSACKLH 707



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 109/471 (23%), Positives = 198/471 (42%), Gaps = 48/471 (10%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
           ++S Y+  G    A   F++ P  +   WN++I       D   A+    RM    +   
Sbjct: 50  LVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIRTHHCASDFVAALNAHRRMLASSARPS 109

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRC--------DGGEDLVRAYNTLIVGYGQRGRVEE 177
              V           A  V     + C        DGG   V   ++L+  Y + G V +
Sbjct: 110 PFTVPLAASAAAELGALGVGASVHAYCVRYGLLAVDGGS--VAVPSSLVYMYARCGVVRD 167

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE-----RD 232
           A KLF+++             +R++V+W +++    + G+         +M+      + 
Sbjct: 168 AVKLFEEMR------------ERDVVAWTAVVSGCVRNGECGDGLRYLVEMVRLAGDGKA 215

Query: 233 TFSWNTMISGY--IHVLDMEEASNLF----VKMPHPDT-LTWNAMVSGYAQIGNLELALD 285
             +  TM SG     VLD   +        VK+   D+ +  +A+ S Y++  + E A  
Sbjct: 216 RPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKCHSTEDACS 275

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F  +P+K++VSW S+I           A++LF +M   G +PD    S +LS      +
Sbjct: 276 LFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGN 335

Query: 346 LHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           +H G   H ++ K    D V + NALI+MY +   +  A  +F  +   ++  SWN MI 
Sbjct: 336 VHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLH-QRDADSWNLMIV 394

Query: 405 GCASHGFATEALELFKSMR---SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           G    G   + LEL++ M+   +++ L    + +S +S+C+    +  GR       + Y
Sbjct: 395 GYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELRLGRS-----AHCY 449

Query: 462 GIEPRIEHFAS----LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
            I+  ++  +S    L+ + GR G+ + A  +      + D   W  L+ +
Sbjct: 450 SIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISS 500



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 151/342 (44%), Gaps = 42/342 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSW----NVMISGYISSRGSGFLEEAR----YLF 52
           MI GY K     K  +L+ EM  RD   +    N ++S   S      L   R    Y  
Sbjct: 392 MIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELRLGRSAHCYSI 451

Query: 53  DIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-NVVSWNAMISGFLQNGDVANAI 111
               + D    N +I  Y + G+ + A ++F     + +VV+WN +IS +   G    A+
Sbjct: 452 KHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNTAV 511

Query: 112 EFFDRMPGR----DSASLSALVSGLIQNGELDEAARV--LVKCGSRCDGGEDLVRAYNT- 164
             +D+M       +S +L  ++S       L+   ++   VK     + G D   + NT 
Sbjct: 512 SLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYVK-----EMGWDYDVSINTA 566

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           LI  Y + G++  AR++FD +             + ++V+WN MI  Y   G+   A E+
Sbjct: 567 LIDMYAKCGQLGTARRIFDSM------------LQHDVVAWNVMISGYGMHGEAKQALEL 614

Query: 225 FEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQ 276
           F +M    ++ +  ++  ++S   H   +EE   LF +M      P+   +  MV    +
Sbjct: 615 FGKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRMGKYSLEPNLKHYACMVDLLGK 674

Query: 277 IGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKL 317
            G+L+ A D    MP + +   W ++++ C+ + D+E  +++
Sbjct: 675 SGHLQEAEDMVLAMPVEPDGGIWGTLLSACKLHDDFEMGLRI 716


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 186/558 (33%), Positives = 302/558 (54%), Gaps = 56/558 (10%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L  A  +F  + E + + WNT+  G+A + +   AL+L+  M +  ++  +      L++
Sbjct: 84  LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143

Query: 105 GDVANAIEFFDRMPGR--------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
              + A +   ++ G         D    ++L+S  +QNG L++A +V  K   R     
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR----- 198

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D+V +Y  LI GY  RG +E A+KLFD+IPV            +++VSWN+MI  YA+ G
Sbjct: 199 DVV-SYTALIKGYASRGYIENAQKLFDEIPV------------KDVVSWNAMISGYAETG 245

Query: 217 DVVSAREIFEQMLER----DTFSWNTMISG-------------YIHVLDMEEASNLFVKM 259
           +   A E+F+ M++     D  +  T++S              ++ + D    SNL +  
Sbjct: 246 NYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIV- 304

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
                   NA++  Y++ G LE A   F+R+P K+++SWN++I G      Y+ A+ LF 
Sbjct: 305 --------NALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQ 356

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT---VIPDVPINNALITMYAR 376
           +M   GE P+  T  SIL   + +  + +G  IH  + K    V     +  +LI MYA+
Sbjct: 357 EMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAK 416

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG I  A  +F  + L K++ SWNAMI G A HG A  + +LF  MR   + P  ITF+ 
Sbjct: 417 CGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVG 475

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           +LSAC+H+G+++ GR  F++M  +Y + P++EH+  ++D++G  G  ++A ++I  M  E
Sbjct: 476 LLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEME 535

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
           PD  +W +LL AC++H NVEL +  AE L+K+EPEN   YVLL N+YA  GRW++  + R
Sbjct: 536 PDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTR 595

Query: 557 LLMKSNNIKKPTGYSWVD 574
            L+    +KK  G S ++
Sbjct: 596 ALLNDKGMKKVPGCSSIE 613



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 200/403 (49%), Gaps = 35/403 (8%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+     +IS Y+ +   G LE+A  +FD  P RD V++  +I GYA  G +E A +LF+
Sbjct: 168 DLYVHTSLISMYVQN---GRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFD 224

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            +P ++VVSWNAMISG+ + G+   A+E F  M       D +++  +VS   Q+G ++ 
Sbjct: 225 EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIEL 284

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +V +       G    ++  N LI  Y + G +E A  LF+++P             +
Sbjct: 285 GRQVHLWIDDHGFGSN--LKIVNALIDLYSKCGELETACGLFERLPY------------K 330

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLER-DTFSWNTMIS-----GYIHVLDMEEASN 254
           +++SWN++I  Y        A  +F++ML   +T +  TM+S      ++  +D+    +
Sbjct: 331 DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIH 390

Query: 255 LFVK-----MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           +++      + +  +L   +++  YA+ G++E A   F  +  K+L SWN+MI G   + 
Sbjct: 391 VYIDKRLKGVTNASSLR-TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHG 449

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPIN 367
             + +  LF +M+  G +PD  TF  +LS  S    L LG  I + +T+   + P +   
Sbjct: 450 RADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHY 509

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
             +I +    G   EA  +   M++  + V W +++  C  HG
Sbjct: 510 GCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHG 552



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 166/350 (47%), Gaps = 29/350 (8%)

Query: 220 SAREIFEQMLERDTFSWNTMISGYI-------HVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           S R I  QM++    + N  +S  I       H   +  A ++F  +  P+ L WN M  
Sbjct: 48  SLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFR 107

Query: 273 GYAQIGNLELALDFFKRMPQKNLV----SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           G+A   +   AL  +  M    L+    ++  ++  C  +K ++   ++   +   G   
Sbjct: 108 GHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDL 167

Query: 329 DRHTFSSILSM--SSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARII 386
           D +  +S++SM   +G ++       H++  K+   DV    ALI  YA  G I  A+ +
Sbjct: 168 DLYVHTSLISMYVQNGRLE-----DAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKL 222

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+E+  +K+VVSWNAMI G A  G   EALELFK M    V P   T ++V+SACA +G 
Sbjct: 223 FDEIP-VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 281

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +E GRQ     ++++G    ++   +L+D+  + G LE A  L + +P++ D   W  L+
Sbjct: 282 IELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DVISWNTLI 339

Query: 507 GACRVHNNV--ELAQVAAEALMKVEPENSTPYVLLYNMYA-----DVGRW 549
           G    H N+  E   +  E L   E  N    + +    A     D+GRW
Sbjct: 340 GG-YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 388



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 135/335 (40%), Gaps = 85/335 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           +I GY  R  +  A+KLFDE+P +DVVSWN MISGY     +G  +EA  LF      ++
Sbjct: 206 LIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAE---TGNYKEALELFKDMMKTNV 262

Query: 55  MPE--------------------RDCVTW-------------NTVISGYAKTGEMEEALR 81
            P+                    R    W             N +I  Y+K GE+E A  
Sbjct: 263 RPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACG 322

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGE 137
           LF  +P ++V+SWN +I G+        A+  F  M       +  ++ +++      G 
Sbjct: 323 LFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 382

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           +D    + V    R  G  +      +LI  Y + G +E A ++F+ I            
Sbjct: 383 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI------------ 430

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
             +++ SWN+MI  +A  G   ++ ++F +M +                           
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGI------------------------ 466

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
               PD +T+  ++S  +  G L+L    F+ M Q
Sbjct: 467 ---QPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498


>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
 gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
          Length = 589

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/414 (37%), Positives = 245/414 (59%), Gaps = 16/414 (3%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N LI  Y + G     RK+FD                R++VSWNSM+  Y   G+V  A+
Sbjct: 155 NALISFYCRIGDCRSGRKVFDH-------------GVRDLVSWNSMVAGYVGCGEVDLAQ 201

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLD-MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           ++F++M +RD FSW TMI GY  +   ++ A  LF +MP  D + WN+M+ GYA+ G ++
Sbjct: 202 DLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMD 261

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A   F+ MP++N++SW+ +I G     +   A++ F +M   G KPDR      ++  +
Sbjct: 262 EARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACA 321

Query: 342 GIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +  L  G  +H  +  K V+ DV +  ALI MY +CG +  A++IFE M   K+VV+WN
Sbjct: 322 QLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPK-KSVVTWN 380

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
            MI G  +HG+  +A++LF  M + +     ++ ++VL++C HAGLV EG   F  M  +
Sbjct: 381 VMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKD 440

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
            G+EP++EH+ +L+D++GR GR++ A + I+ MP EP   +WG+LL +CR H  VELA++
Sbjct: 441 LGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAEL 500

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + E L  +  ++S  YVLL N+YAD G WDD   +R LM +  +KK  G S ++
Sbjct: 501 SVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIE 554



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 167/338 (49%), Gaps = 50/338 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GYV   E+  A+ LFDEM QRD  SW  MI GY     +G ++ AR LFD MP+RD 
Sbjct: 187 MVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGY--GEMAGGVDRARELFDQMPDRDL 244

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
           V WN++I GYA+ G M+EA  LF  MP RNV+SW+ +I G+++ G+   A+EFF RM   
Sbjct: 245 VCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRC 304

Query: 118 ---PGR--------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166
              P R          A L AL  G   +  L E  +VL             V     LI
Sbjct: 305 GIKPDRVAAVGAVAACAQLGALEQGRWLHSYL-EKKKVLFD-----------VVVQTALI 352

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
             Y + GR++ A+ +F+ +P            K+++V+WN MI+     G  + A ++F 
Sbjct: 353 DMYVKCGRLDLAKLIFESMP------------KKSVVTWNVMIVGLGTHGYGLDAIKLFN 400

Query: 227 QM-LER---DTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQI 277
           QM  ER   D  S   +++   H   + E   +F +M       P    + A++    + 
Sbjct: 401 QMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRA 460

Query: 278 GNLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYEGA 314
           G ++ A +  + MP +     W S++A C +++  E A
Sbjct: 461 GRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELA 498



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 180/396 (45%), Gaps = 64/396 (16%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+ + N +IS Y      G     R +FD    RD V+WN++++GY   GE++ A  LF+
Sbjct: 150 DLFTRNALISFYCRI---GDCRSGRKVFD-HGVRDLVSWNSMVAGYVGCGEVDLAQDLFD 205

Query: 85  SMPARNVVSWNAMISGFLQ-NGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
            M  R+  SW  MI G+ +  G V  A E FD+MP RD    ++++ G  ++G +D    
Sbjct: 206 EMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMD---- 261

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
                                            EAR LF+++P            +RN++
Sbjct: 262 ---------------------------------EARVLFEEMP------------ERNVI 276

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEA----SNL 255
           SW+ +I  Y + G+   A E F++ML    + D  +    ++    +  +E+     S L
Sbjct: 277 SWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYL 336

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
             K    D +   A++  Y + G L+LA   F+ MP+K++V+WN MI G  T+     AI
Sbjct: 337 EKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAI 396

Query: 316 KLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITM 373
           KLF QM+ E    D  +  ++L+    +G+V   LG+         + P V    ALI +
Sbjct: 397 KLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDL 456

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
             R G + +AR   E M +      W +++  C SH
Sbjct: 457 LGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSH 492



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 12/203 (5%)

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           ++   WN+++           ++  F +M+     PD +TF ++L          +G+ +
Sbjct: 80  RHAFPWNTLVR-LHAAASPRRSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPGCRVGLVV 138

Query: 353 HQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H    +T +  D+   NALI+ Y R G     R +F+    ++++VSWN+M+ G    G 
Sbjct: 139 HGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHG--VRDLVSWNSMVAGYVGCGE 196

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
              A +LF  MR      ++ T I        AG V+  R+ F  M +       +  + 
Sbjct: 197 VDLAQDLFDEMRQRDAF-SWATMIDGYGEM--AGGVDRARELFDQMPDR-----DLVCWN 248

Query: 472 SLVDIVGRHGRLEDAMDLIKGMP 494
           S++D   RHGR+++A  L + MP
Sbjct: 249 SMIDGYARHGRMDEARVLFEEMP 271


>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 471

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 149/379 (39%), Positives = 226/379 (59%), Gaps = 4/379 (1%)

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK 258
           ++N+V W SMI  Y    D+VSAR  F+   ERD   WNTM++GYI + +M EA +LF +
Sbjct: 53  EKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIEMGNMMEARSLFDQ 112

Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
           MP  D ++WN ++ GYA IG++E     F  M ++N+ SWN +I G   N      +  F
Sbjct: 113 MPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSF 172

Query: 319 IQMQVEGEK-PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP--DVPINNALITMYA 375
            +M  EG   P+  T + +LS  + +     G ++H+          DV + NALI MY 
Sbjct: 173 KRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMYG 232

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +CGAI  A  +F+ +K  ++++SWN MI G A+HG  TEAL+LF  M++  + P  +TF+
Sbjct: 233 KCGAIEIAMEVFKGIKR-RDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPDKVTFV 291

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
            VL AC H GLVE+G  +F SM  ++ I P+IEH   +VD++ R G L  A++ I  MP 
Sbjct: 292 GVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEFINKMPV 351

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           + D  +W  LLGA +V+  V+  ++A + L+K+EP N   +V+L N+Y D GR+DDA  +
Sbjct: 352 KADAVIWATLLGASKVYKKVDTGELALKELIKLEPRNPANFVMLSNIYGDAGRFDDAARL 411

Query: 556 RLLMKSNNIKKPTGYSWVD 574
           ++ M+    KK  G SW++
Sbjct: 412 KVAMRDTGFKKEAGISWIE 430



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 193/395 (48%), Gaps = 36/395 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+GY+  +++  AR+ FD  P+RD+V WN M++GYI     G + EAR LFD MP RD 
Sbjct: 62  MINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIE---MGNMMEARSLFDQMPCRDV 118

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++WNTV+ GYA  G+ME   R+F+ M  RNV SWN +I G+ QNG V+  +  F RM   
Sbjct: 119 MSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDE 178

Query: 121 DS-----ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
            S     A+L+ ++S   + G  D   RV  K G      +  V   N LI  YG+ G +
Sbjct: 179 GSVFPNDATLTLVLSACAKLGAFDFGKRVH-KYGENLGYNKVDVNVKNALIDMYGKCGAI 237

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LER 231
           E A ++F  I             +R+++SWN+MI   A  G    A ++F +M    +  
Sbjct: 238 EIAMEVFKGIK------------RRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISP 285

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT-----WNAMVSGYAQIGNLELALDF 286
           D  ++  ++    H+  +E+    F  M    ++T        +V   ++ G L  A++F
Sbjct: 286 DKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEF 345

Query: 287 FKRMPQK-NLVSWNSMIAGCETNKDYE-GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
             +MP K + V W +++   +  K  + G + L   +++E   P      S +   +G  
Sbjct: 346 INKMPVKADAVIWATLLGASKVYKKVDTGELALKELIKLEPRNPANFVMLSNIYGDAGRF 405

Query: 345 D----LHLGMQIHQMVTKTVIPDVPINNALITMYA 375
           D    L + M+      +  I  +  ++ L+  Y+
Sbjct: 406 DDAARLKVAMRDTGFKKEAGISWIETDDGLVKFYS 440



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 144/285 (50%), Gaps = 17/285 (5%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGY 70
           M  A K+F EM +++VV W  MI+GY+ ++    L  AR  FD+ PERD V WNT+++GY
Sbjct: 41  MVSANKVFCEMVEKNVVIWTSMINGYLLNKD---LVSARRYFDLSPERDIVLWNTMVAGY 97

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
            + G M EA  LF+ MP R+V+SWN ++ G+   GD+      FD M  R+  S + L+ 
Sbjct: 98  IEMGNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIK 157

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVR-AYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           G  QNG + E   VL       D G      A  TL++    +    +  K   K   N 
Sbjct: 158 GYAQNGRVSE---VLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENL 214

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
              + +V  K      N++I  Y K G +  A E+F+ +  RD  SWNTMI+G       
Sbjct: 215 GYNKVDVNVK------NALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHG 268

Query: 250 EEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
            EA +LF +M +    PD +T+  ++     +G +E  L +F  M
Sbjct: 269 TEALDLFHEMKNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSM 313


>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
          Length = 589

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/414 (37%), Positives = 245/414 (59%), Gaps = 16/414 (3%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N LI  Y + G     RK+FD                R++VSWNSM+  Y   G+V  A+
Sbjct: 155 NALISFYCRIGDCRSGRKVFDH-------------GVRDLVSWNSMVAGYVGCGEVDLAQ 201

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLD-MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           ++F++M +RD FSW TMI GY  +   ++ A  LF +MP  D + WN+M+ GYA+ G ++
Sbjct: 202 DLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMD 261

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A   F+ MP++N++SW+ +I G     +   A++ F +M   G KPDR      ++  +
Sbjct: 262 EARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLSCGIKPDRVAAVGAVAACA 321

Query: 342 GIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +  L  G  +H  +  K V+ DV +  ALI MY +CG +  A++IFE M   K+VV+WN
Sbjct: 322 QLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPK-KSVVTWN 380

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
            MI G  +HG+  +A++LF  M + +     ++ ++VL++C HAGLV EG   F  M  +
Sbjct: 381 VMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSVLAVLTSCTHAGLVSEGLGIFYRMEKD 440

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
            G+EP++EH+ +L+D++GR GR++ A + I+ MP EP   +WG+LL +CR H  VELA++
Sbjct: 441 LGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAEL 500

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + E L  +  ++S  YVLL N+YAD G WDD   +R LM +  +KK  G S ++
Sbjct: 501 SVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIE 554



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 167/338 (49%), Gaps = 50/338 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GYV   E+  A+ LFDEM QRD  SW  MI GY     +G ++ AR LFD MP+RD 
Sbjct: 187 MVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGY--GEMAGGVDRARELFDQMPDRDL 244

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
           V WN++I GYA+ G M+EA  LF  MP RNV+SW+ +I G+++ G+   A+EFF RM   
Sbjct: 245 VCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLSC 304

Query: 118 ---PGR--------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166
              P R          A L AL  G   +  L E  +VL             V     LI
Sbjct: 305 GIKPDRVAAVGAVAACAQLGALEQGRWLHSYL-EKKKVLFD-----------VVVQTALI 352

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
             Y + GR++ A+ +F+ +P            K+++V+WN MI+     G  + A ++F 
Sbjct: 353 DMYVKCGRLDLAKLIFESMP------------KKSVVTWNVMIVGLGTHGYGLDAIKLFN 400

Query: 227 QM-LER---DTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQI 277
           QM  ER   D  S   +++   H   + E   +F +M       P    + A++    + 
Sbjct: 401 QMETERAPMDDLSVLAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRA 460

Query: 278 GNLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYEGA 314
           G ++ A +  + MP +     W S++A C +++  E A
Sbjct: 461 GRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELA 498



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 180/396 (45%), Gaps = 64/396 (16%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+ + N +IS Y      G     R +FD    RD V+WN++++GY   GE++ A  LF+
Sbjct: 150 DLFTRNALISFYCRI---GDCRSGRKVFD-HGVRDLVSWNSMVAGYVGCGEVDLAQDLFD 205

Query: 85  SMPARNVVSWNAMISGFLQ-NGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
            M  R+  SW  MI G+ +  G V  A E FD+MP RD    ++++ G  ++G +D    
Sbjct: 206 EMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMD---- 261

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
                                            EAR LF+++P            +RN++
Sbjct: 262 ---------------------------------EARVLFEEMP------------ERNVI 276

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEA----SNL 255
           SW+ +I  Y + G+   A E F++ML    + D  +    ++    +  +E+     S L
Sbjct: 277 SWSIVIDGYVRFGEPNEALEFFQRMLSCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYL 336

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
             K    D +   A++  Y + G L+LA   F+ MP+K++V+WN MI G  T+     AI
Sbjct: 337 EKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAI 396

Query: 316 KLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITM 373
           KLF QM+ E    D  +  ++L+    +G+V   LG+         + P V    ALI +
Sbjct: 397 KLFNQMETERAPMDDLSVLAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDL 456

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
             R G + +AR   E M +      W +++  C SH
Sbjct: 457 LGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSH 492



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 12/203 (5%)

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           ++   WN+++           ++  F +M+     PD +TF ++L          +G+ +
Sbjct: 80  RHAFPWNTLVR-LHAAASPRRSLLYFSRMRRVAVAPDAYTFPAVLKACGCAPGCRVGLVV 138

Query: 353 HQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H    +T +  D+   NALI+ Y R G     R +F+    ++++VSWN+M+ G    G 
Sbjct: 139 HGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHG--VRDLVSWNSMVAGYVGCGE 196

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
              A +LF  MR      ++ T I        AG V+  R+ F  M +       +  + 
Sbjct: 197 VDLAQDLFDEMRQRDAF-SWATMIDGYGEM--AGGVDRARELFDQMPDR-----DLVCWN 248

Query: 472 SLVDIVGRHGRLEDAMDLIKGMP 494
           S++D   RHGR+++A  L + MP
Sbjct: 249 SMIDGYARHGRMDEARVLFEEMP 271


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 194/618 (31%), Positives = 311/618 (50%), Gaps = 65/618 (10%)

Query: 6   VKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV---- 61
           VK   +A A  LFD MP+++VV+W  ++SGY     +G  E A  +F  M E        
Sbjct: 59  VKSGRLADALDLFDRMPRKNVVAWTSVMSGYTR---NGRPEAALAMFADMVESGVAPNDF 115

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL-----QNGDVANAIEFFDR 116
             N  +   A  G +    ++ +S+  R   + +A I   L     + G +  A E FDR
Sbjct: 116 ACNAALVACADLGALRAGEQV-HSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDR 174

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVK-------------------C----GSRCD 153
           M   D    ++L+S   +NGE + AA  L++                   C    G +  
Sbjct: 175 MDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIH 234

Query: 154 G--------GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
           G            V +   LI  Y + G  + A+ +FD +  +C          +N+VSW
Sbjct: 235 GYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSL--HC----------KNVVSW 282

Query: 206 NSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMI--SGYIHVLDMEEASNLFVKM 259
            SM+  Y + G +  A ++F  M+    + + F+ + ++   G I +      S +   +
Sbjct: 283 CSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDL 342

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
              D    NA++S Y + G +E       ++   +LVSW + I+    N   E AI L  
Sbjct: 343 I-TDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLC 401

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCG 378
           QM  EG  P+ + FSS+LS  + +  L  GMQ H +  K     ++   NALI MY++CG
Sbjct: 402 QMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCG 461

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
            +  AR+ F+ M    +V SWN++I G A HG A +ALE+F  MRS  + P   TF+ VL
Sbjct: 462 QMGSARLAFDVMH-THDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVL 520

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
             C H+G+VEEG   F+ M+++Y   P   H+A ++D++GR+GR ++A+ +I  MPFEPD
Sbjct: 521 MGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPD 580

Query: 499 KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558
             +W  LL +C++H N+++ ++AA+ LM++   +S  YVL+ N+YA  G W+DA +VR  
Sbjct: 581 ALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRR 640

Query: 559 MKSNNIKKPTGYSWVDFS 576
           M    +KK  G SW++ +
Sbjct: 641 MDETGVKKDAGCSWIEIN 658



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 192/469 (40%), Gaps = 89/469 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           +I  Y +   +  A+++FD M   DVV +  +IS +   R   F   A  L  ++ +   
Sbjct: 155 LIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFC--RNGEFELAAEALIQMLKQGLK 212

Query: 58  ---------------------------------RDCVTWNTVISGYAKTGEMEEALRLFN 84
                                            +   +   +I  Y++ GE + A  +F+
Sbjct: 213 PNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFD 272

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
           S+  +NVVSW +M+  ++++G +  A++ F  M           +S  +   E    + V
Sbjct: 273 SLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDM-----------ISEGVDPNEF-ALSIV 320

Query: 145 LVKCGS-------RCDG-GEDL---VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
           L  CGS        C     DL   +R  N L+  YG+ G VEE   + +KI        
Sbjct: 321 LGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIE------- 373

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDM 249
                  ++VSW + I    + G    A  +  QM       + +++++++S    V  +
Sbjct: 374 -----NPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASL 428

Query: 250 EEASN---LFVKM-PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
           ++      L +K+    +  T NA+++ Y++ G +  A   F  M   ++ SWNS+I G 
Sbjct: 429 DQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGH 488

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL--SMSSGIV---DLHLGMQIHQMVTKTV 360
             + D   A+++F +M+  G KPD  TF  +L     SG+V   +L   + I Q    + 
Sbjct: 489 AQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQY---SF 545

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            P       +I M  R G   EA  +  +M    + + W  ++  C  H
Sbjct: 546 TPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLH 594



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 149/347 (42%), Gaps = 46/347 (13%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           PD +     ++   + G L  ALD F RMP+KN+V+W S+++G   N   E A+ +F  M
Sbjct: 46  PDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADM 105

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAI 380
              G  P+    ++ L   + +  L  G Q+H +  +     D  I + LI MY+RCG++
Sbjct: 106 VESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSL 165

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
             A+ +F+ M    +VV + ++I     +G    A E    M    + P   T  ++L+A
Sbjct: 166 PAAKEVFDRMD-SPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTA 224

Query: 441 CA-------HAGLVEE------------GRQHFKSMVNEYGIE---------PRIEHFAS 472
           C        H  L+++                F S   E+ +            +  + S
Sbjct: 225 CPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCS 284

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGAC---RVHNNVELAQVAAEALM 526
           ++ +  R GRLE+A+ +   M  E   P++     +LGAC    +   +  + +  + + 
Sbjct: 285 MMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLIT 344

Query: 527 KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            +   N+     L +MY   GR     E+  ++  N I+ P   SW 
Sbjct: 345 DIRVSNA-----LLSMY---GRTGLVEELEAML--NKIENPDLVSWT 381



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 151/362 (41%), Gaps = 67/362 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-DIMPE-- 57
           +I  Y +  E   A+ +FD +  ++VVSW  M+  YI     G LEEA  +F D++ E  
Sbjct: 254 LIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIR---DGRLEEALQVFGDMISEGV 310

Query: 58  -----------------------------RDCVT----WNTVISGYAKTGEMEEALRLFN 84
                                         D +T     N ++S Y +TG +EE   + N
Sbjct: 311 DPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLN 370

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            +   ++VSW   IS   QNG    AI    +M       +  + S+++S       LD+
Sbjct: 371 KIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQ 430

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +    C +   G +  +   N LI  Y + G++  AR  FD            V    
Sbjct: 431 GMQ--FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFD------------VMHTH 476

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLF 256
           ++ SWNS+I  +A+ GD   A E+F +M    ++ D  ++  ++ G  H   +EE    F
Sbjct: 477 DVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFF 536

Query: 257 VKMPHPDTLT-----WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKD 310
             M    + T     +  M+    + G  + AL     MP + + + W +++A C+ +++
Sbjct: 537 RLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRN 596

Query: 311 YE 312
            +
Sbjct: 597 LD 598



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 41/185 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY---------------ISSRG---- 41
           +I+ Y K  +M  AR  FD M   DV SWN +I G+               + S G    
Sbjct: 453 LINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPD 512

Query: 42  -------------SGFLEEARYLFDIMPERDCVT-----WNTVISGYAKTGEMEEALRLF 83
                        SG +EE    F +M ++   T     +  +I    + G  +EALR+ 
Sbjct: 513 DSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMI 572

Query: 84  NSMPAR-NVVSWNAMISG--FLQNGDVAN-AIEFFDRMPGRDSASLSALVSGLIQNGELD 139
           N MP   + + W  +++     +N D+   A +    +  RDSAS   + +    +GE +
Sbjct: 573 NDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWE 632

Query: 140 EAARV 144
           +A +V
Sbjct: 633 DARKV 637


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 199/633 (31%), Positives = 319/633 (50%), Gaps = 82/633 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------YISSRGSGFLEEARYLFD 53
           +I  Y+K   +  AR +FD +P++  V+W  MISG       Y+S +    L E   + D
Sbjct: 189 LIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPD 248

Query: 54  ------------IMP-----------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                       I+P                 E+D    N +I  Y K G +  A +LF+
Sbjct: 249 GYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFD 308

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDE 140
            MP +N++SW  ++SG+ QN     A+E F  MP      D  + S++++       L+ 
Sbjct: 309 GMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEF 368

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +V         G +  V   N+LI  Y +   + EARK+FD    +            
Sbjct: 369 GTQVHAYTIKANLGNDSYVT--NSLIDMYAKCDCLTEARKVFDIFAAD------------ 414

Query: 201 NIVSWNSMIMCYAKAG---DVVSAREIFEQM--------------LERDTFSWNTM-ISG 242
           ++V +N+MI  Y++ G   ++  A  IF  M              L R + S  ++ +S 
Sbjct: 415 DVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSK 474

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
            IH L  +   NL       D    +A+++ Y+    L+ +   F  M  K+LV WNSM 
Sbjct: 475 QIHGLMFKFGLNL-------DIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMF 527

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVI 361
           +G     + E A+ LF+++Q+  ++PD  TF  +++ +  +  L LG + H Q++ + + 
Sbjct: 528 SGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLE 587

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
            +  I NAL+ MYA+CG+  +A   F+     ++VV WN++I   A+HG   +AL++ + 
Sbjct: 588 CNPYITNALLDMYAKCGSPEDAHKAFDSAAS-RDVVCWNSVISSYANHGEGRKALQMLEK 646

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M    + P YITF+ VLSAC+HAGLVE+G + F+ M+  +GIEP  EH+  +V ++GR G
Sbjct: 647 MMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML-RFGIEPETEHYVCMVSLLGRAG 705

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
           RL +A +LI+ MP +P   VW +LL  C    NVELA+ AAE  +  +P++S  + LL N
Sbjct: 706 RLNEARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSN 765

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +YA  G W DA +VR  MK   + K  G SW++
Sbjct: 766 IYASKGMWTDAKKVRERMKFEGVVKEPGRSWIE 798



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 143/531 (26%), Positives = 242/531 (45%), Gaps = 71/531 (13%)

Query: 4   GYVKRREMAKA---RKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           G   RRE A+    R L D +   +VV   +++SG                     E D 
Sbjct: 40  GIRGRREFARLLQLRALDDPLLYHNVVHGQIIVSGL--------------------ELDT 79

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANA-IEFFDRMPG 119
              N +++ Y++ G M  A ++F  MP RN+V+W+ M+S    +G    + + F D    
Sbjct: 80  YLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRT 139

Query: 120 RDSASLSALVSGLIQNGE-LDEAARVLV------KCGSRCDGGEDLVRAYNTLIVGYGQR 172
           R ++    ++S  IQ    LD + R +V         SR D     V     LI  Y + 
Sbjct: 140 RKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFDRD---VYVGTLLIDFYLKE 196

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           G ++ AR +FD +P            +++ V+W +MI    K G    + ++F Q++E  
Sbjct: 197 GNIDYARLVFDALP------------EKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEG- 243

Query: 233 TFSWNTMISGYIHVLDMEEASNL-FV---KMPHPDTLTW---------NAMVSGYAQIGN 279
               N +  GYI    +   S L F+   K  H   L +         N ++  Y + G 
Sbjct: 244 ----NVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGR 299

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           +  A   F  MP KN++SW ++++G + N  ++ A++LF  M   G KPD    SSIL+ 
Sbjct: 300 VRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTS 359

Query: 340 SSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            + +  L  G Q+H    K  +  D  + N+LI MYA+C  + EAR +F ++    +VV 
Sbjct: 360 CASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVF-DIFAADDVVL 418

Query: 399 WNAMIGGCASHGFATE---ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           +NAMI G +  G   E   AL +F  MR   + P+ +TF+S+L A A    +   +Q   
Sbjct: 419 FNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQ-IH 477

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            ++ ++G+   I   ++L+ +      L+D+  +   M  + D  +W ++ 
Sbjct: 478 GLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVK-DLVIWNSMF 527


>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 483

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/414 (37%), Positives = 245/414 (59%), Gaps = 16/414 (3%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N LI  Y + G     RK+FD                R++VSWNSM+  Y   G+V  A+
Sbjct: 49  NALISFYCRIGDCRSGRKVFD-------------HGVRDLVSWNSMVAGYVGCGEVDLAQ 95

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLD-MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           ++F++M +RD FSW TMI GY  +   ++ A  LF +MP  D + WN+M+ GYA+ G ++
Sbjct: 96  DLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMD 155

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A   F+ MP++N++SW+ +I G     +   A++ F +M   G KPDR      ++  +
Sbjct: 156 EARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACA 215

Query: 342 GIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +  L  G  +H  +  K V+ DV +  ALI MY +CG +  A++IFE M   K+VV+WN
Sbjct: 216 QLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPK-KSVVTWN 274

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
            MI G  +HG+  +A++LF  M + +     ++ ++VL++C HAGLV EG   F  M  +
Sbjct: 275 VMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKD 334

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
            G+EP++EH+ +L+D++GR GR++ A + I+ MP EP   +WG+LL +CR H  VELA++
Sbjct: 335 LGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAEL 394

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + E L  +  ++S  YVLL N+YAD G WDD   +R LM +  +KK  G S ++
Sbjct: 395 SVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIE 448



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 167/338 (49%), Gaps = 50/338 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GYV   E+  A+ LFDEM QRD  SW  MI GY     +G ++ AR LFD MP+RD 
Sbjct: 81  MVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGY--GEMAGGVDRARELFDQMPDRDL 138

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
           V WN++I GYA+ G M+EA  LF  MP RNV+SW+ +I G+++ G+   A+EFF RM   
Sbjct: 139 VCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRC 198

Query: 118 ---PGR--------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166
              P R          A L AL  G   +  L E  +VL             V     LI
Sbjct: 199 GIKPDRVAAVGAVAACAQLGALEQGRWLHSYL-EKKKVLFD-----------VVVQTALI 246

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
             Y + GR++ A+ +F+ +P            K+++V+WN MI+     G  + A ++F 
Sbjct: 247 DMYVKCGRLDLAKLIFESMP------------KKSVVTWNVMIVGLGTHGYGLDAIKLFN 294

Query: 227 QM-LER---DTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQI 277
           QM  ER   D  S   +++   H   + E   +F +M       P    + A++    + 
Sbjct: 295 QMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRA 354

Query: 278 GNLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYEGA 314
           G ++ A +  + MP +     W S++A C +++  E A
Sbjct: 355 GRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELA 392



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 180/396 (45%), Gaps = 64/396 (16%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+ + N +IS Y      G     R +FD    RD V+WN++++GY   GE++ A  LF+
Sbjct: 44  DLFTRNALISFYCRI---GDCRSGRKVFD-HGVRDLVSWNSMVAGYVGCGEVDLAQDLFD 99

Query: 85  SMPARNVVSWNAMISGFLQ-NGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
            M  R+  SW  MI G+ +  G V  A E FD+MP RD    ++++ G  ++G +D    
Sbjct: 100 EMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMD---- 155

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
                                            EAR LF+++P            +RN++
Sbjct: 156 ---------------------------------EARVLFEEMP------------ERNVI 170

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEA----SNL 255
           SW+ +I  Y + G+   A E F++ML    + D  +    ++    +  +E+     S L
Sbjct: 171 SWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYL 230

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
             K    D +   A++  Y + G L+LA   F+ MP+K++V+WN MI G  T+     AI
Sbjct: 231 EKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAI 290

Query: 316 KLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITM 373
           KLF QM+ E    D  +  ++L+    +G+V   LG+         + P V    ALI +
Sbjct: 291 KLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDL 350

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
             R G + +AR   E M +      W +++  C SH
Sbjct: 351 LGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSH 386



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 11/168 (6%)

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARII 386
           PD +TF ++L          +G+ +H    +T +  D+   NALI+ Y R G     R +
Sbjct: 8   PDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKV 67

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+    ++++VSWN+M+ G    G    A +LF  MR      ++ T I        AG 
Sbjct: 68  FDHG--VRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAF-SWATMIDGYG--EMAGG 122

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           V+  R+ F  M +       +  + S++D   RHGR+++A  L + MP
Sbjct: 123 VDRARELFDQMPDR-----DLVCWNSMIDGYARHGRMDEARVLFEEMP 165


>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
          Length = 616

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/414 (37%), Positives = 245/414 (59%), Gaps = 16/414 (3%)

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N LI  Y + G     RK+FD                R++VSWNSM+  Y   G+V  A+
Sbjct: 155 NALISFYCRIGDCRSGRKVFDH-------------GVRDLVSWNSMVAGYVGCGEVDLAQ 201

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLD-MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           ++F++M +RD FSW TMI GY  +   ++ A  LF +MP  D + WN+M+ GYA+ G ++
Sbjct: 202 DLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMD 261

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A   F+ MP++N++SW+ +I G     +   A++ F +M   G KPDR      ++  +
Sbjct: 262 EARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACA 321

Query: 342 GIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +  L  G  +H  +  K V+ DV +  ALI MY +CG +  A++IFE M   K+VV+WN
Sbjct: 322 QLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPK-KSVVTWN 380

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
            MI G  +HG+  +A++LF  M + +     ++ ++VL++C HAGLV EG   F  M  +
Sbjct: 381 VMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKD 440

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
            G+EP++EH+ +L+D++GR GR++ A + I+ MP EP   +WG+LL +CR H  VELA++
Sbjct: 441 LGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAEL 500

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + E L  +  ++S  YVLL N+YAD G WDD   +R LM +  +KK  G S ++
Sbjct: 501 SVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIE 554



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 167/338 (49%), Gaps = 50/338 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GYV   E+  A+ LFDEM QRD  SW  MI GY     +G ++ AR LFD MP+RD 
Sbjct: 187 MVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGY--GEMAGGVDRARELFDQMPDRDL 244

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
           V WN++I GYA+ G M+EA  LF  MP RNV+SW+ +I G+++ G+   A+EFF RM   
Sbjct: 245 VCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRC 304

Query: 118 ---PGR--------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166
              P R          A L AL  G   +  L E  +VL             V     LI
Sbjct: 305 GIKPDRVAAVGAVAACAQLGALEQGRWLHSYL-EKKKVLFD-----------VVVQTALI 352

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
             Y + GR++ A+ +F+ +P            K+++V+WN MI+     G  + A ++F 
Sbjct: 353 DMYVKCGRLDLAKLIFESMP------------KKSVVTWNVMIVGLGTHGYGLDAIKLFN 400

Query: 227 QM-LER---DTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQI 277
           QM  ER   D  S   +++   H   + E   +F +M       P    + A++    + 
Sbjct: 401 QMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRA 460

Query: 278 GNLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYEGA 314
           G ++ A +  + MP +     W S++A C +++  E A
Sbjct: 461 GRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELA 498



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 180/396 (45%), Gaps = 64/396 (16%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+ + N +IS Y      G     R +FD    RD V+WN++++GY   GE++ A  LF+
Sbjct: 150 DLFTRNALISFYCRI---GDCRSGRKVFD-HGVRDLVSWNSMVAGYVGCGEVDLAQDLFD 205

Query: 85  SMPARNVVSWNAMISGFLQ-NGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
            M  R+  SW  MI G+ +  G V  A E FD+MP RD    ++++ G  ++G +D    
Sbjct: 206 EMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMD---- 261

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
                                            EAR LF+++P            +RN++
Sbjct: 262 ---------------------------------EARVLFEEMP------------ERNVI 276

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEA----SNL 255
           SW+ +I  Y + G+   A E F++ML    + D  +    ++    +  +E+     S L
Sbjct: 277 SWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYL 336

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
             K    D +   A++  Y + G L+LA   F+ MP+K++V+WN MI G  T+     AI
Sbjct: 337 EKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAI 396

Query: 316 KLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITM 373
           KLF QM+ E    D  +  ++L+    +G+V   LG+         + P V    ALI +
Sbjct: 397 KLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDL 456

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
             R G + +AR   E M +      W +++  C SH
Sbjct: 457 LGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSH 492



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 12/203 (5%)

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           ++   WN+++           ++  F +M+     PD +TF ++L          +G+ +
Sbjct: 80  RHAFPWNTLVR-LHAAASPRRSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPGCRVGLVV 138

Query: 353 HQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H    +T +  D+   NALI+ Y R G     R +F+    ++++VSWN+M+ G    G 
Sbjct: 139 HGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHG--VRDLVSWNSMVAGYVGCGE 196

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
              A +LF  MR      ++ T I        AG V+  R+ F  M +       +  + 
Sbjct: 197 VDLAQDLFDEMRQRDAF-SWATMIDGYGEM--AGGVDRARELFDQMPDR-----DLVCWN 248

Query: 472 SLVDIVGRHGRLEDAMDLIKGMP 494
           S++D   RHGR+++A  L + MP
Sbjct: 249 SMIDGYARHGRMDEARVLFEEMP 271


>gi|302782173|ref|XP_002972860.1| hypothetical protein SELMODRAFT_98704 [Selaginella moellendorffii]
 gi|300159461|gb|EFJ26081.1| hypothetical protein SELMODRAFT_98704 [Selaginella moellendorffii]
          Length = 509

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 168/531 (31%), Positives = 275/531 (51%), Gaps = 29/531 (5%)

Query: 21  MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEAL 80
           MP  D+VS N  ++        G LE A+  FD MP+RD  +WN+++    +    + A 
Sbjct: 1   MPFWDLVSLNTALAAL------GHLESAKQFFDSMPQRDIFSWNSIVQACVEDDIADLAA 54

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
            +FN MP R++VSWN++I   +Q    A A+E  +  P  D  + +  +      GE+  
Sbjct: 55  LVFNRMPNRSLVSWNSLIQVRIQQTQCARALELLEEAPEFDVFTCNLAIQTYTGLGEIQF 114

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A         R     D+V  + T++V + Q G + +A  +++ +P            + 
Sbjct: 115 AREFFDSMDQR-----DIV-TWATMLVAHSQHGDLPQANSVYENMP------------QH 156

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           N V+  +M++ Y+   ++ SA  IF++M E D F+WN M+  Y    ++        KMP
Sbjct: 157 NAVAGTAMLVAYSNTSNLPSAIHIFKKMPELDIFAWNAMLVAYAASGNISSLEKFLNKMP 216

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             D  +WN+ +  Y   G L  A   F  MPQ++L++WNSMIAG    +++  A+ LF  
Sbjct: 217 MLDICSWNSTLQAYGWYGYLGKAKSVFDSMPQRDLITWNSMIAGYTQAREWNLALMLFGS 276

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV----TKTVIPDVPINNALITMYAR 376
           M  EG  PD  T+SS+         +  G  +H ++     + ++  + I+ AL++MY +
Sbjct: 277 MDQEGISPDTATYSSVFYACGEHGAVTQGRILHSLLEEAPDREILESLAISAALVSMYGK 336

Query: 377 CGAIVEARI-IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           CG + EAR  +F E    ++   WN+M+   A +G   E + LF++M    V P  +TF+
Sbjct: 337 CGCLDEARQKLFGEYPGNRDRNWWNSMLTAYARNGHHREVVRLFRAMDLDGVPPDGVTFV 396

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           ++L+AC+HAG ++ G   F +M   YG+ P   H+A L D++ R G+LE A ++I  MP+
Sbjct: 397 TLLAACSHAGDLQRGAACFAAMAELYGVAPGAGHYACLADLLSRLGQLERAENVIHAMPY 456

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
           EP  A W ++LGAC  H   + A+ AA   +  EP  S+ YVLL N+   V
Sbjct: 457 EPGPAAWTSVLGACGSHGTADRARDAARYALDAEPRGSSSYVLLSNVLGSV 507



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 186/429 (43%), Gaps = 67/429 (15%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           I  Y    E+  AR+ FD M QRD+V+W  M+   ++    G L +A  +++ MP+ + V
Sbjct: 103 IQTYTGLGEIQFAREFFDSMDQRDIVTWATML---VAHSQHGDLPQANSVYENMPQHNAV 159

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
               ++  Y+ T  +  A+ +F  MP  ++ +WNAM+  +  +G++++  +F ++MP  D
Sbjct: 160 AGTAMLVAYSNTSNLPSAIHIFKKMPELDIFAWNAMLVAYAASGNISSLEKFLNKMPMLD 219

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
                                                + ++N+ +  YG  G + +A+ +
Sbjct: 220 -------------------------------------ICSWNSTLQAYGWYGYLGKAKSV 242

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWN 237
           FD +P            +R++++WNSMI  Y +A +   A  +F  M    +  DT +++
Sbjct: 243 FDSMP------------QRDLITWNSMIAGYTQAREWNLALMLFGSMDQEGISPDTATYS 290

Query: 238 TMISG---YIHVLDMEEASNLFVKMPHPDTL----TWNAMVSGYAQIGNLELALD-FFKR 289
           ++      +  V       +L  + P  + L       A+VS Y + G L+ A    F  
Sbjct: 291 SVFYACGEHGAVTQGRILHSLLEEAPDREILESLAISAALVSMYGKCGCLDEARQKLFGE 350

Query: 290 MP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            P  ++   WNSM+     N  +   ++LF  M ++G  PD  TF ++L+  S   DL  
Sbjct: 351 YPGNRDRNWWNSMLTAYARNGHHREVVRLFRAMDLDGVPPDGVTFVTLLAACSHAGDLQR 410

Query: 349 GMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           G      + +   V P       L  + +R G +  A  +   M       +W +++G C
Sbjct: 411 GAACFAAMAELYGVAPGAGHYACLADLLSRLGQLERAENVIHAMPYEPGPAAWTSVLGAC 470

Query: 407 ASHGFATEA 415
            SHG A  A
Sbjct: 471 GSHGTADRA 479



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 149/325 (45%), Gaps = 32/325 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  Y     +  A  +F +MP+ D+ +WN M+  Y +S     LE+     + MP  D 
Sbjct: 164 MLVAYSNTSNLPSAIHIFKKMPELDIFAWNAMLVAYAASGNISSLEK---FLNKMPMLDI 220

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN+ +  Y   G + +A  +F+SMP R++++WN+MI+G+ Q  +   A+  F  M   
Sbjct: 221 CSWNSTLQAYGWYGYLGKAKSVFDSMPQRDLITWNSMIAGYTQAREWNLALMLFGSMDQE 280

Query: 121 ----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL--VRAYNTLIVGYGQRGR 174
               D+A+ S++     ++G + +  R+L          E L  +     L+  YG+ G 
Sbjct: 281 GISPDTATYSSVFYACGEHGAVTQ-GRILHSLLEEAPDREILESLAISAALVSMYGKCGC 339

Query: 175 VEEAR-KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----L 229
           ++EAR KLF + P N DR             WNSM+  YA+ G       +F  M    +
Sbjct: 340 LDEARQKLFGEYPGNRDRNW-----------WNSMLTAYARNGHHREVVRLFRAMDLDGV 388

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELAL 284
             D  ++ T+++   H  D++  +  F  M       P    +  +    +++G LE A 
Sbjct: 389 PPDGVTFVTLLAACSHAGDLQRGAACFAAMAELYGVAPGAGHYACLADLLSRLGQLERAE 448

Query: 285 DFFKRMP-QKNLVSWNSMIAGCETN 308
           +    MP +    +W S++  C ++
Sbjct: 449 NVIHAMPYEPGPAAWTSVLGACGSH 473


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/413 (36%), Positives = 240/413 (58%), Gaps = 40/413 (9%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           ++ +WN ++  Y K+  +  A ++F++M ER+T S+ T+I GY   +   EA  LFV++ 
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH 131

Query: 261 --------------------------------------HPDTLTWNAMVSGYAQIGNLEL 282
                                                 H D    NA++  YA+ G +E 
Sbjct: 132 REVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMEN 191

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           +++ F   P +N V+WN++I G     D E A++LF+ M     +    T+SS L   + 
Sbjct: 192 SMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACAS 251

Query: 343 IVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +  L  G+QIH +  KT    D+ + NALI MYA+CG+I +AR++F+ M   ++ VSWNA
Sbjct: 252 LAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNK-QDEVSWNA 310

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI G + HG   EAL +F  M+  +V P  +TF+ VLSACA+AGL+++G+ +F SM+ ++
Sbjct: 311 MISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDH 370

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           GIEP IEH+  +V ++GR G L+ A+ LI  +PF+P   VW ALLGAC +HN++EL +++
Sbjct: 371 GIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRIS 430

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A+ ++++EP++   +VLL NMYA   RWD+   VR  MK   +KK  G SW++
Sbjct: 431 AQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIE 483



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 173/363 (47%), Gaps = 25/363 (6%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D   WN +++ Y K+  + +A +LF+ MP RN +S+  +I G+ ++     AIE F R+ 
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH 131

Query: 119 GRDSASLSALVSGLIQNGELDEAARV--LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            R+        + ++Q     E   +   + C     G    V   N L+  Y + GR+E
Sbjct: 132 -REVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRME 190

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT--- 233
            + +LF + P             RN V+WN++I+ + + GD   A  +F  MLE      
Sbjct: 191 NSMELFAESP------------HRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQAT 238

Query: 234 -FSWNTMISGYIHVLDME---EASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFK 288
             ++++ +     +  +E   +  +L VK     D +  NA++  YA+ G+++ A   F 
Sbjct: 239 EVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFD 298

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIVDL 346
            M +++ VSWN+MI+G   +     A+++F +MQ    KPD+ TF  +LS   ++G++D 
Sbjct: 299 LMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQ 358

Query: 347 HLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
                   +    + P +     ++ +  R G + +A  + +E+    +V+ W A++G C
Sbjct: 359 GQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGAC 418

Query: 407 ASH 409
             H
Sbjct: 419 VIH 421



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 185/423 (43%), Gaps = 71/423 (16%)

Query: 6   VKRREMAKARKLFDEMPQR----DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           +++ E ++ + L  E+ +R    D+ +WN++++ Y+ S    FL +A  LFD MPER+ +
Sbjct: 49  IQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKS---DFLCDASKLFDEMPERNTI 105

Query: 62  TWNTVISGYAKTGEMEEALRLF-----NSMPAR--------------------------- 89
           ++ T+I GYA++    EA+ LF       +P +                           
Sbjct: 106 SFVTLIQGYAESVRFLEAIELFVRLHREVLPNQFTFASVLQACATMEGLNLGNQIHCHVI 165

Query: 90  ------NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
                 +V   NA++  + + G + N++E F   P R+  + + ++ G +Q G+ ++A R
Sbjct: 166 KIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALR 225

Query: 144 VLVK-CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
           + +     R    E     Y++ +        +E   ++                F ++I
Sbjct: 226 LFLNMLEYRVQATE---VTYSSALRACASLAALEPGLQIHSLTV--------KTTFDKDI 274

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY-IHVLDMEEASNLFVKMPH 261
           V  N++I  YAK G +  AR +F+ M ++D  SWN MISGY +H L   EA  +F KM  
Sbjct: 275 VVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLG-REALRIFDKMQE 333

Query: 262 ----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-----WNSMIAGCETNKDYE 312
               PD LT+  ++S  A  G L+    +F  M Q + +      +  M+         +
Sbjct: 334 TEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLD 393

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALIT 372
            A+KL  ++  +   P    + ++L       D+ LG    Q V +    D   +  L  
Sbjct: 394 KAVKLIDEIPFQ---PSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSN 450

Query: 373 MYA 375
           MYA
Sbjct: 451 MYA 453



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 163/393 (41%), Gaps = 88/393 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEE----ARYLFDIMP 56
           +++ YVK   +  A KLFDEMP+R+ +S+  +I GY  S    FLE      R   +++P
Sbjct: 79  LLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAES--VRFLEAIELFVRLHREVLP 136

Query: 57  ER---------------------------------DCVTWNTVISGYAKTGEMEEALRLF 83
            +                                 D    N ++  YAK G ME ++ LF
Sbjct: 137 NQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELF 196

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--------------PGRDSASLSALV 129
              P RN V+WN +I G +Q GD   A+  F  M                R  ASL+AL 
Sbjct: 197 AESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALE 256

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
            GL       +   + VK     D     +   N LI  Y + G +++AR +FD +    
Sbjct: 257 PGL-------QIHSLTVKTTFDKD-----IVVTNALIDMYAKCGSIKDARLVFDLMN--- 301

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIH 245
                    K++ VSWN+MI  Y+  G    A  IF++M E     D  ++  ++S   +
Sbjct: 302 ---------KQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACAN 352

Query: 246 VLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWN 299
              +++    F  M       P    +  MV    + G+L+ A+     +P Q +++ W 
Sbjct: 353 AGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWR 412

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
           +++  C  + D E   ++  Q  +E E  D+ T
Sbjct: 413 ALLGACVIHNDIELG-RISAQRVLEMEPQDKAT 444


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 188/523 (35%), Positives = 282/523 (53%), Gaps = 52/523 (9%)

Query: 82  LFNS-MPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDS-----ASLSALV 129
           LFN  +   NV SWN++I+   ++GD   A+  F  M      P R +      S SAL+
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
             L    +  + A +         G E  +   + L+  Y + G + +AR LFD+I    
Sbjct: 167 D-LHSGRQAHQQALIF--------GFEPDLFVSSALVDMYSKCGELRDARTLFDEIS--- 214

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER------------DTFSWN 237
                     RNIVSW SMI  Y +  D   A  +F++ L              D  +  
Sbjct: 215 ---------HRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMV 265

Query: 238 TMISGYIHVLD---MEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQK 293
           +++S    V +    E      +K      L   N ++  YA+ G L ++   F  M ++
Sbjct: 266 SVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAER 325

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQI 352
           +++SWNS+IA    N     ++++F +M  +GE   +  T S++L   +      LG  I
Sbjct: 326 DVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCI 385

Query: 353 HQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H  V K  +  +V +  ++I MY +CG +  AR  F+ M+  KNV SW+AM+ G   HG 
Sbjct: 386 HDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMRE-KNVKSWSAMVAGYGMHGH 444

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
           A EALE+F  M    V P YITF+SVL+AC+HAGL+EEG   FK+M +E+ +EP +EH+ 
Sbjct: 445 AKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYG 504

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            +VD++GR G L++A DLIKGM   PD  VWGALLGACR+H NV+L +++A  L +++P+
Sbjct: 505 CMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPK 564

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N   YVLL N+YAD GRW+D   +R+LMK++ + KP G+S VD
Sbjct: 565 NCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVD 607



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 207/450 (46%), Gaps = 49/450 (10%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D    + ++  Y+K GE+ +A  LF+ +  RN+VSW +MI+G++QN D   A+  F  
Sbjct: 184 EPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKE 243

Query: 117 MPGRDSASLS---------ALVSGLIQNGELDEAARV------LVKCGSRCDGGEDLVRA 161
               +S S           A+VS L     + E +        L+K G   D G +    
Sbjct: 244 FLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVE---- 299

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
            NTL+  Y + G +  +R++FD +             +R+++SWNS+I  YA+ G    +
Sbjct: 300 -NTLMDAYAKCGELGVSRRVFDGMA------------ERDVISWNSIIAVYAQNGMSTES 346

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH---------PDTLTWNAMVS 272
            EIF +M++    ++N +    + +      S    K  H          +     +++ 
Sbjct: 347 MEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIID 406

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
            Y + G +E+A   F RM +KN+ SW++M+AG   +   + A+++F +M + G KP+  T
Sbjct: 407 MYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYIT 466

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEM 390
           F S+L+  S    L  G    + ++    V P V     ++ +  R G + EA  + + M
Sbjct: 467 FVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGM 526

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC-AHAGLVEE 449
           KL  + V W A++G C  H      L    + + F++ P    +  +LS   A AG  E+
Sbjct: 527 KLRPDFVVWGALLGACRMH--KNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWED 584

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             +    M N   ++P      SLVDI GR
Sbjct: 585 VERMRILMKNSGLVKPP---GFSLVDIKGR 611



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 169/384 (44%), Gaps = 83/384 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS--------------------SR 40
           ++  Y K  E+  AR LFDE+  R++VSW  MI+GY+                     S 
Sbjct: 193 LVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSE 252

Query: 41  GSG----------------------FLEEARYLFDIMP--ERDCVTWNTVISGYAKTGEM 76
           G G                       + E  + F I    E D    NT++  YAK GE+
Sbjct: 253 GDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGEL 312

Query: 77  EEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP-----GRDSASLSALVSG 131
             + R+F+ M  R+V+SWN++I+ + QNG    ++E F RM        ++ +LSA++  
Sbjct: 313 GVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLA 372

Query: 132 LIQNGELDEAARVLVKCGSRCD---GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
              +G     ++ L KC        G E  V    ++I  Y + G+VE ARK FD++   
Sbjct: 373 CAHSG-----SQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR-- 425

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYI 244
                     ++N+ SW++M+  Y   G    A E+F +M    ++ +  ++ ++++   
Sbjct: 426 ----------EKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACS 475

Query: 245 HVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSW 298
           H   +EE  + F  M H     P    +  MV    + G L+ A D  K M  + + V W
Sbjct: 476 HAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVW 535

Query: 299 NSMIAGCETNKDYE----GAIKLF 318
            +++  C  +K+ +     A KLF
Sbjct: 536 GALLGACRMHKNVDLGEISARKLF 559



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 120/240 (50%), Gaps = 16/240 (6%)

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
           N  L   F K + + N+ SWNS+IA    + D   A++ F  M+    KP+R TF   + 
Sbjct: 101 NPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIK 160

Query: 339 MSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
             S ++DLH G Q HQ  +     PD+ +++AL+ MY++CG + +AR +F+E+   +N+V
Sbjct: 161 SCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEIS-HRNIV 219

Query: 398 SWNAMIGGCASHGFATEALELFK--------SMRSFKVLPTYITFISVLSACAHAG--LV 447
           SW +MI G   +  A  AL LFK        S    +V    I  +SVLSAC+      +
Sbjct: 220 SWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSI 279

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
            EG   F   + + G E  +    +L+D   + G L  +  +  GM  E D   W +++ 
Sbjct: 280 TEGVHGF---LIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMA-ERDVISWNSIIA 335



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 114/274 (41%), Gaps = 63/274 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K  E+  +R++FD M +RDV+SWN +I+ Y     +G   E+  +F  M +   
Sbjct: 302 LMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQ---NGMSTESMEIFHRMVKDGE 358

Query: 61  VTWN----------------------------------------TVISGYAKTGEMEEAL 80
           + +N                                        ++I  Y K G++E A 
Sbjct: 359 INYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMAR 418

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNG 136
           + F+ M  +NV SW+AM++G+  +G    A+E F  M       +  +  ++++     G
Sbjct: 419 KAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAG 478

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            L+E            D  E  V  Y  ++   G+ G ++EA   FD I          +
Sbjct: 479 LLEEGWHWFKAMSHEFD-VEPGVEHYGCMVDLLGRAGYLKEA---FDLIK--------GM 526

Query: 197 RFKRNIVSWNSMIMCYAKAGDV----VSAREIFE 226
           + + + V W +++       +V    +SAR++FE
Sbjct: 527 KLRPDFVVWGALLGACRMHKNVDLGEISARKLFE 560


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 174/534 (32%), Positives = 270/534 (50%), Gaps = 72/534 (13%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           S  L  AR L    PE D   +NT++ GY+++ E   ++ +F  M          M  GF
Sbjct: 219 SDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEM----------MRKGF 268

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
           +     + A         + +A+  +L +G              + C +   G +  +  
Sbjct: 269 IFPDSFSFAFVV------KAAANFRSLRTGF------------QMHCQALKHGLDSHLFV 310

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
             TLI  YG+ G V  ARK+FD++P            + N+V+WN+++    +  DV  A
Sbjct: 311 ATTLIGMYGECGCVGFARKVFDEMP------------QPNLVAWNAVVTACFRGNDVSGA 358

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
           REIF++ML R+  SWN M++GYI   ++E A  +F +MPH D ++W+ M+ G++  G+  
Sbjct: 359 REIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFN 418

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            +  +F+ + +  +                               +P+  + + +LS  S
Sbjct: 419 ESFSYFRELLRAEM-------------------------------RPNEVSLTGVLSACS 447

Query: 342 GIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
                  G  +H  V K+     V +NNALI MY+RCG +  AR++FE M+  +++VSW 
Sbjct: 448 QSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWT 507

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           +MI G A HG   EA+ +F  M    V+P  I+FIS+L AC+HAGL++EG  +F  M   
Sbjct: 508 SMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRV 567

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           Y IEP +EH+  +VD+ GR G+L+ A   I  MP  P   VW  LLGAC  H N+ELA+ 
Sbjct: 568 YHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQ 627

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             + L +++P NS   VLL N+YA  G+W D   +R  M    IKK T +S V+
Sbjct: 628 VKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAWSLVE 681



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 154/315 (48%), Gaps = 30/315 (9%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           ARK+FDEMPQ ++V+WN +++     RG+  +  AR +FD M  R+  +WN +++GY K 
Sbjct: 327 ARKVFDEMPQPNLVAWNAVVTACF--RGND-VSGAREIFDKMLVRNHTSWNVMLAGYIKA 383

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALV 129
           GE+E A R+F+ MP R+ VSW+ MI GF  NG    +  +F  +   +      SL+ ++
Sbjct: 384 GELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVL 443

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           S   Q+G   E  + L     +  G   +V   N LI  Y + G V  AR +F+      
Sbjct: 444 SACSQSGAF-EFGKTLHGFVEK-SGYSWIVSVNNALIDMYSRCGNVPMARLVFE------ 495

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIH 245
                 ++ KR+IVSW SMI   A  G    A  IF +M E     D  S+ +++    H
Sbjct: 496 -----GMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSH 550

Query: 246 VLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWN 299
              ++E    F KM       P    +  MV  Y + G L+ A  F  +MP     + W 
Sbjct: 551 AGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWR 610

Query: 300 SMIAGCETNKDYEGA 314
           +++  C ++ + E A
Sbjct: 611 TLLGACSSHGNIELA 625



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 113/275 (41%), Gaps = 57/275 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           M++GY+K  E+  A+++F EMP RD VSW+ MI G+  S    F E   Y  +++     
Sbjct: 376 MLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGF--SHNGSFNESFSYFRELLRAEMR 433

Query: 57  -----------------------------ERDCVTW-----NTVISGYAKTGEMEEALRL 82
                                        E+   +W     N +I  Y++ G +  A  +
Sbjct: 434 PNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLV 493

Query: 83  FNSMP-ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           F  M   R++VSW +MI+G   +G    AI  F+ M       D  S  +L+      G 
Sbjct: 494 FEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGL 553

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           + E      K   R    E  V  Y  ++  YG+ G++++A     ++P+          
Sbjct: 554 IKEGEGYFSKM-KRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPI---------- 602

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
                + W +++   +  G++  A ++ +++ E D
Sbjct: 603 -PPTAIVWRTLLGACSSHGNIELAEQVKQRLNELD 636


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 186/513 (36%), Positives = 282/513 (54%), Gaps = 27/513 (5%)

Query: 73  TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRDSASLSALVS 130
           +G +  A  +FN +P     + N++I G+        AI F+  M   G D    +   S
Sbjct: 87  SGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFT-FPS 145

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
                G L E  ++   C S   G        NTL+  Y   G +  ARK+FDK+ VN  
Sbjct: 146 LFKSCGVLCEGKQL--HCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM-VN-- 200

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHV 246
                    +++VSW +MI  YA+      A ++F +M    ++ +  +   +++     
Sbjct: 201 ---------KSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARS 251

Query: 247 LDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
            D+E A  +   +        T+  +A++  Y + G   LA D F +MP+KNL  WN MI
Sbjct: 252 RDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMI 311

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP 362
            G   + DYE A+ LF +MQ+ G K D+ T +S+L   + +  L LG  +H  + K  I 
Sbjct: 312 NGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIE 371

Query: 363 -DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
            DV +  AL+ MYA+CG+I  A  +F+EM   K+V++W A+I G A  G   +ALELF  
Sbjct: 372 VDVALGTALVDMYAKCGSIESAMRVFQEMPE-KDVMTWTALIVGLAMCGQGLKALELFHE 430

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M+  +V P  ITF+ VL+AC+HAGLV EG  +F SM N+YGI+P IEH+  +VD++GR G
Sbjct: 431 MQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAG 490

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
           R+ +A DLI+ MP  PD  V   LL ACR+H N+ +A+ AA+ L++++P+N   YVLL N
Sbjct: 491 RIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSN 550

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +Y+ +  W+ A ++R LM   NIKKP G S ++
Sbjct: 551 IYSSMKNWEAAKKMRELMVERNIKKPPGCSAIE 583



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/445 (23%), Positives = 191/445 (42%), Gaps = 63/445 (14%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISS---RGSGFLEEARYLFDIMPER------------ 58
           AR +F+++P     + N +I GY +    R +    +   L  + P+R            
Sbjct: 93  ARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGV 152

Query: 59  ------------------DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISG 100
                             D    NT+++ Y+  G +  A ++F+ M  ++VVSW  MI  
Sbjct: 153 LCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGA 212

Query: 101 FLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
           + Q      AI+ F RM       +  +L  +++   ++ +L+ A +V         G  
Sbjct: 213 YAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFH 272

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
            ++ +   L+  Y + G    AR LF+K+P            ++N+  WN MI  + +  
Sbjct: 273 TVLTS--ALMDVYCKCGCYPLARDLFNKMP------------EKNLFCWNIMINGHVEDS 318

Query: 217 DVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP----DTLTWN 268
           D   A  +F +M    ++ D  +  +++    H+  +E    L V +       D     
Sbjct: 319 DYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGT 378

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           A+V  YA+ G++E A+  F+ MP+K++++W ++I G         A++LF +MQ+   KP
Sbjct: 379 ALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKP 438

Query: 329 DRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARI 385
           D  TF  +L+  S  G+V+  +    + M  K  I P +     ++ M  R G I EA  
Sbjct: 439 DAITFVGVLAACSHAGLVNEGIAY-FNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAED 497

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHG 410
           + + M +  +      ++  C  HG
Sbjct: 498 LIQNMPMAPDYFVLVGLLSACRIHG 522



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 135/331 (40%), Gaps = 65/331 (19%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGY--------------------------------IS 38
           +  ARK+FD+M  + VVSW  MI  Y                                 +
Sbjct: 188 LVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTA 247

Query: 39  SRGSGFLEEARYLFDIMPERDCVTWNTVISG-----YAKTGEMEEALRLFNSMPARNVVS 93
              S  LE A+ +   + E   + ++TV++      Y K G    A  LFN MP +N+  
Sbjct: 248 CARSRDLETAKQVHKYIDETG-IGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFC 306

Query: 94  WNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEAARVLVKCG 149
           WN MI+G +++ D   A+  F+ M       D  ++++L+      G L+    + V   
Sbjct: 307 WNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIE 366

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
              +  E  V     L+  Y + G +E A ++F ++P            ++++++W ++I
Sbjct: 367 K--EKIEVDVALGTALVDMYAKCGSIESAMRVFQEMP------------EKDVMTWTALI 412

Query: 210 MCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMP----- 260
           +  A  G  + A E+F +M    ++ D  ++  +++   H   + E    F  MP     
Sbjct: 413 VGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGI 472

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
            P    +  MV    + G +  A D  + MP
Sbjct: 473 QPSIEHYGCMVDMLGRAGRIAEAEDLIQNMP 503


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 170/547 (31%), Positives = 301/547 (55%), Gaps = 48/547 (8%)

Query: 51  LFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANA 110
           ++ +  E +      +I  YA  G +  A + F+++  +++VSW  M++ + +N    ++
Sbjct: 67  IYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDS 126

Query: 111 IEFFD--RMPGRDSASLSALVSGLIQNG---ELDEAARVLVKCGSRCDGGEDLVRAYNTL 165
           ++ F   RM G +    +   +G+++     E     + +  C  +     DL      L
Sbjct: 127 LQLFAEMRMVGFNPNHFT--FAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLL 184

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
            + Y + G   +  ++F+++P            K +++ W+ MI  YA++     A E+F
Sbjct: 185 DL-YTKFGDANDVLRVFEEMP------------KHDVIPWSFMISRYAQSNQSREAVELF 231

Query: 226 EQMLER----DTFSWNTMISG-------------YIHVLDMEEASNLFVKMPHPDTLTWN 268
            QM       + F++ +++               + HVL +    N+FV          N
Sbjct: 232 GQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVS---------N 282

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           A++  YA+ G L+ ++  F  +P +N V+WN+MI G   + D + A+ L+  M     + 
Sbjct: 283 ALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQA 342

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIF 387
              T+SS+L   + +  + LG QIH +  KT+   DV + NALI MYA+CG+I  AR++F
Sbjct: 343 SEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVF 402

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
           + M   ++ +SWNAMI G + HG   EAL+ F+ M+  + +P  +TF+S+LSAC++AGL+
Sbjct: 403 D-MLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLL 461

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           + G+ +FKSMV +YGIEP +EH+  +V ++GR G L+ A+ LI+ +P EP+  VW ALLG
Sbjct: 462 DIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLG 521

Query: 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
           AC +HN+V+L  ++A+ +++++P++   +VLL N+YA   RW+    VR  MK+  +KK 
Sbjct: 522 ACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKE 581

Query: 568 TGYSWVD 574
            G SW++
Sbjct: 582 PGLSWIE 588



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 228/480 (47%), Gaps = 33/480 (6%)

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSG----LIQNGELDEA 141
           MP RN VS+  +I G++Q+  +   ++ F R+  R+   L+  V      L+ + E  E 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVH-REGHELNPFVFTTILKLLVSVECAEL 59

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
           A  L  C  +  G E        LI  Y   G V  AR+ FD I              ++
Sbjct: 60  AYSLHACIYKL-GHESNAFVGTALIDAYAVCGSVNSARQAFDAIAC------------KD 106

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDM---EEASN 254
           +VSW  M+ CYA+      + ++F +M       + F++  ++   I +      +    
Sbjct: 107 MVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHG 166

Query: 255 LFVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
             +K  +  D      ++  Y + G+    L  F+ MP+ +++ W+ MI+    +     
Sbjct: 167 CVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSRE 226

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALIT 372
           A++LF QM+     P++ TF+S+L   + I +L LG Q+H  V K  +  +V ++NAL+ 
Sbjct: 227 AVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMD 286

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           +YA+CG +  +  +F E+   +N V+WN MI G    G   +AL L+K+M   +V  + +
Sbjct: 287 VYAKCGRLDNSMKLFMELP-NRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEV 345

Query: 433 TFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           T+ SVL ACA    +E G Q H  S+   Y  +  + +  +L+D+  + G +++A  L+ 
Sbjct: 346 TYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGN--ALIDMYAKCGSIKNA-RLVF 402

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP-ENSTPYVLLYNMYADVGRWD 550
            M  E D+  W A++    +H  V  A  A + + + E   N   +V + +  ++ G  D
Sbjct: 403 DMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLD 462



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 181/425 (42%), Gaps = 97/425 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
           ++  Y K  +     ++F+EMP+ DV+ W+ MIS Y  S  S    EA  LF       +
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQS---REAVELFGQMRRAFV 239

Query: 55  MPER--------DCVTW-------------------------NTVISGYAKTGEMEEALR 81
           +P +         C +                          N ++  YAK G ++ +++
Sbjct: 240 LPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMK 299

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           LF  +P RN V+WN MI G++Q+GD   A+  +  M           +   +Q  E+  +
Sbjct: 300 LFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNM-----------LECQVQASEVTYS 348

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
           + VL  C S                +  G +      + ++DK                +
Sbjct: 349 S-VLRACAS-------------LAAMELGTQIHSLSLKTIYDK----------------D 378

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY-IHVLDMEEASNLFVKMP 260
           +V  N++I  YAK G + +AR +F+ + ERD  SWN MISGY +H L + EA   F  M 
Sbjct: 379 VVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGL-VGEALKAFQMMQ 437

Query: 261 H----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN-----LVSWNSMIAGCETNKDY 311
                P+ LT+ +++S  +  G L++  ++FK M Q       +  +  M+     +   
Sbjct: 438 ETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHL 497

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALI 371
           + A+KL  ++ +E   P+   + ++L       D+ LG+   Q + +    D   +  L 
Sbjct: 498 DKAVKLIEEIPLE---PNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLS 554

Query: 372 TMYAR 376
            +YAR
Sbjct: 555 NIYAR 559



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 129/311 (41%), Gaps = 73/311 (23%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE------- 57
           Y K   +  + KLF E+P R+ V+WN MI GY+ S G G  ++A  L+  M E       
Sbjct: 288 YAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQS-GDG--DKALSLYKNMLECQVQASE 344

Query: 58  --------------------------------RDCVTWNTVISGYAKTGEMEEALRLFNS 85
                                           +D V  N +I  YAK G ++ A  +F+ 
Sbjct: 345 VTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDM 404

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA----SLSALVSGLIQNGELDEA 141
           +  R+ +SWNAMISG+  +G V  A++ F  M   +      +  +++S     G LD  
Sbjct: 405 LSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIG 464

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
                K   +  G E  +  Y  ++   G+ G +++A KL ++IP+     E NV+    
Sbjct: 465 QNYF-KSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPL-----EPNVKV--- 515

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
              W +++       DV       +Q+L+ D                 +EA+++ +   +
Sbjct: 516 ---WRALLGACVIHNDVDLGIMSAQQILQIDP---------------QDEATHVLLSNIY 557

Query: 262 PDTLTWNAMVS 272
             T  WN++ S
Sbjct: 558 ARTRRWNSVAS 568


>gi|147820082|emb|CAN67135.1| hypothetical protein VITISV_005195 [Vitis vinifera]
          Length = 800

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 200/634 (31%), Positives = 313/634 (49%), Gaps = 105/634 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI-------------SSRGSGFLEE 47
           +ISGY K  E+  A K+FDE  QRD VSWN MI+G +             S +  GF  +
Sbjct: 40  IISGYAKCGEIRIASKMFDETSQRDAVSWNTMIAGXVNFGNFETALEFLKSMKRYGFAVD 99

Query: 48  ARYLFDIMPERDCVTW-----------------------NTVISGYAKTGEMEEALRLFN 84
                 I+    CV +                       + ++  YAK   +E+A  +F 
Sbjct: 100 GYSFGSILKGVACVGYVEVGQQVHSMIVKIGYEGNVFAGSALLDMYAKCERVEDAFEVFK 159

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
           S+  RN V+WNA+ISG+   GD   A    D M       D  + + L++ L        
Sbjct: 160 SINIRNSVTWNALISGYAHVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKL 219

Query: 141 AARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
             +V   +VK G   D         N +I  Y + G +E+A ++FD          G + 
Sbjct: 220 TTQVHAKIVKHGLASD-----TTVCNAIITAYSECGSIEDAERVFD----------GAIE 264

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG----------- 242
             R++V+WNSM+  Y        A E+F +M     E D +++ ++IS            
Sbjct: 265 -TRDLVTWNSMLAAYLVNNQEEEAFELFLEMQVLGFEPDIYTYTSVISAAFEXAHQGQGK 323

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY--AQIGNLELALDFFKRMPQKNLVSWNS 300
            +H L ++      V +        N++++ Y  +   +++ AL+ F+ +  K+ VSWNS
Sbjct: 324 SLHGLVIKRGLEFLVPIS-------NSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNS 376

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           ++ G   +   E A+K F  M+ +    D + FS++L   S +  L LG Q+H +     
Sbjct: 377 ILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVL----- 431

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
                           CG I +AR  F+      + ++WN++I G A HG    AL+LF 
Sbjct: 432 ----------------CGVIEDARKSFDATPK-DSSIAWNSLIFGYAQHGRGKIALDLFF 474

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M+  +V   +ITF++VL+AC+H GLVEEG    KSM ++YGI PR+EH+A ++D++GR 
Sbjct: 475 LMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRA 534

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           GRL++A  LI+ MPFEPD  VW  LLGACR   ++ELA   A  L+++EPE    YVLL 
Sbjct: 535 GRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLS 594

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +M+  + RW++   ++ LMK   +KK  G+SW++
Sbjct: 595 SMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIE 628



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 153/532 (28%), Positives = 264/532 (49%), Gaps = 66/532 (12%)

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--- 118
           T N +ISGYAK GE+  A ++F+    R+ VSWN MI+G +  G+   A+EF   M    
Sbjct: 36  TANNIISGYAKCGEIRIASKMFDETSQRDAVSWNTMIAGXVNFGNFETALEFLKSMKRYG 95

Query: 119 -GRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
              D  S  +++ G+   G ++   +V   +VK G      E  V A + L+  Y +  R
Sbjct: 96  FAVDGYSFGSILKGVACVGYVEVGQQVHSMIVKIGY-----EGNVFAGSALLDMYAKCER 150

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM------ 228
           VE+A ++F  I +            RN V+WN++I  YA  GD  +A  + + M      
Sbjct: 151 VEDAFEVFKSINI------------RNSVTWNALISGYAHVGDRGTAFWLLDCMELEGVE 198

Query: 229 LERDTFS--WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
           ++  TF+     +    +H L  +  + +       DT   NA+++ Y++ G++E A   
Sbjct: 199 IDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERV 258

Query: 287 FK-RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
           F   +  ++LV+WNSM+A    N   E A +LF++MQV G +PD +T++S++S +     
Sbjct: 259 FDGAIETRDLVTWNSMLAAYLVNNQEEEAFELFLEMQVLGFEPDIYTYTSVISAAFEXAH 318

Query: 346 LHLGMQIHQMVTKTVIPD-VPINNALITMY--ARCGAIVEARIIFEEMKLLKNVVSWNAM 402
              G  +H +V K  +   VPI+N+LI MY  +   ++ EA  IFE ++  K+ VSWN++
Sbjct: 319 QGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLE-NKDHVSWNSI 377

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH-------------AGLVEE 449
           + G +  G + +AL+ F++MRS  V+  +  F +VL +C+               G++E+
Sbjct: 378 LTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLCGVIED 437

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD---LIKGMPFEPDKAVWGALL 506
            R+ F +   +  I      + SL+    +HGR + A+D   L+K    + D   + A+L
Sbjct: 438 ARKSFDATPKDSSIA-----WNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVL 492

Query: 507 GACRVHNNVELAQVAAEALMKVEPENSTP-----YVLLYNMYADVGRWDDAN 553
            AC   +++ L +     L  +E +   P     Y  + ++    GR D+A 
Sbjct: 493 TAC---SHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAK 541



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 195/450 (43%), Gaps = 85/450 (18%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           +I + N++I  YAK G++  A ++F++  +RD  SWNTMI+G ++  + E A      M 
Sbjct: 33  SIYTANNIISGYAKCGEIRIASKMFDETSQRDAVSWNTMIAGXVNFGNFETALEFLKSMK 92

Query: 261 H----PDTLTWNAMVSGYAQIGNLEL---------------------------------- 282
                 D  ++ +++ G A +G +E+                                  
Sbjct: 93  RYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMIVKIGYEGNVFAGSALLDMYAKCERVE 152

Query: 283 -ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A + FK +  +N V+WN++I+G     D   A  L   M++EG + D  TF+ +L++  
Sbjct: 153 DAFEVFKSINIRNSVTWNALISGYAHVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLD 212

Query: 342 GIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
                 L  Q+H ++V   +  D  + NA+IT Y+ CG+I +A  +F+     +++V+WN
Sbjct: 213 DPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWN 272

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC---AHAG--------LVEE 449
           +M+     +    EA ELF  M+     P   T+ SV+SA    AH G        +++ 
Sbjct: 273 SMLAAYLVNNQEEEAFELFLEMQVLGFEPDIYTYTSVISAAFEXAHQGQGKSLHGLVIKR 332

Query: 450 G----------------RQHFKSMVNEYGIEPRIEH-----FASLVDIVGRHGRLEDAMD 488
           G                + H KSM     I   +E+     + S++    + G  EDA+ 
Sbjct: 333 GLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALK 392

Query: 489 LIKGMPFE---PDKAVWGALLGAC----------RVHNNVELAQVAAEALMKVEPENSTP 535
             + M  +    D   + A+L +C          +VH    + + A ++      ++S  
Sbjct: 393 FFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLCGVIEDARKSFDATPKDSSIA 452

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           +  L   YA  GR   A ++  LMK   +K
Sbjct: 453 WNSLIFGYAQHGRGKIALDLFFLMKDRRVK 482


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 146/352 (41%), Positives = 219/352 (62%), Gaps = 2/352 (0%)

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           I +   E D      ++  Y     +E+A ++F KM    T TWNAM++G+AQ  +++ A
Sbjct: 36  IIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKA 95

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
           L  F  M ++++VSW ++IAG   N   + ++ +F QM+  G K DR    S+LS  + +
Sbjct: 96  LKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADL 155

Query: 344 VDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             L LG Q H  V ++    D+ + +AL+ MYA+ G++ +A  +F++M   +N VSWN++
Sbjct: 156 AALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQ-RNEVSWNSI 214

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I GCA HG   +A+ LF+ M    + P  I+F+ VLSAC+H GLV EGR +F  M   YG
Sbjct: 215 ITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYG 274

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           I P + H+  ++D++GR G L++A + I GMP EPD +VWGALLGACR+H N ELA+  A
Sbjct: 275 IVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIA 334

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           E L+ +E + +  YVLL N+YA  G+WDDA +VR LMK   + K  GYSW++
Sbjct: 335 EHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIE 386



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 157/326 (48%), Gaps = 44/326 (13%)

Query: 23  QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRL 82
           + DVV    ++  Y      G LE+A ++FD M ER   TWN +I+G+A+  +M++AL+L
Sbjct: 42  ESDVVVQTALVHMYARC---GSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKL 98

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAA 142
           F  M  R+VVSW A+I+G+ QNG    ++  F++M      S    + G + +   D AA
Sbjct: 99  FYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKS-DRFIMGSVLSACADLAA 157

Query: 143 RVL--------VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
             L        V+ G   D     +   + L+  Y + G +E+A ++FDK+P        
Sbjct: 158 LELGRQFHAYVVQSGFALD-----IVVGSALVDMYAKSGSMEDACQVFDKMP-------- 204

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME 250
               +RN VSWNS+I   A+ G    A  +FEQML+     +  S+  ++S   H   + 
Sbjct: 205 ----QRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVN 260

Query: 251 EASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAG 304
           E    F  M       PD   +  M+    + G L+ A +F   MP +  VS W +++  
Sbjct: 261 EGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGA 320

Query: 305 CETNKDYEGAIK-----LFIQMQVEG 325
           C  + + E A +     L +++Q+ G
Sbjct: 321 CRIHGNTELAKRIAEHLLGMEVQIAG 346



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 127/272 (46%), Gaps = 36/272 (13%)

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVE 382
           +G KP++ T S+++   + I  L  G Q H  + K     DV +  AL+ MYARCG++ +
Sbjct: 4   KGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLED 63

Query: 383 ARIIFEEM----------------------KLLK--------NVVSWNAMIGGCASHGFA 412
           A  +F++M                      K LK        +VVSW A+I G A +G+ 
Sbjct: 64  AGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYG 123

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
            E+L +F  MR   +        SVLSACA    +E GRQ F + V + G    I   ++
Sbjct: 124 DESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQ-FHAYVVQSGFALDIVVGSA 182

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK--VEP 530
           LVD+  + G +EDA  +   MP + ++  W +++  C  H     A +  E +++  ++P
Sbjct: 183 LVDMYAKSGSMEDACQVFDKMP-QRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKP 241

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
            N   +V + +  +  G  ++      LM  N
Sbjct: 242 -NEISFVGVLSACSHTGLVNEGRGYFNLMTQN 272



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 141/318 (44%), Gaps = 36/318 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y +   +  A  +FD+M +R   +WN MI+G+  +R    +++A  LF  M ERD 
Sbjct: 51  LVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRD---MKKALKLFYEMSERDV 107

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W  VI+GYA+ G  +E+L +FN M    + S   ++   L       A+E   +    
Sbjct: 108 VSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAY 167

Query: 121 --------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
                   D    SALV    ++G +++A +V  K   R +       ++N++I G  Q 
Sbjct: 168 VVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNE------VSWNSIITGCAQH 221

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER- 231
           GR  +A  LF+++             K N +S+  ++   +  G V   R  F  M +  
Sbjct: 222 GRGNDAVLLFEQML--------QAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNY 273

Query: 232 ----DTFSWNTMISGYIHVLDMEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDF 286
               D   +  MI        ++EA N    MP  PD   W A++      GN ELA   
Sbjct: 274 GIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELA--- 330

Query: 287 FKRMPQKNLVSWNSMIAG 304
            KR+ + +L+     IAG
Sbjct: 331 -KRIAE-HLLGMEVQIAG 346


>gi|242038381|ref|XP_002466585.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
 gi|241920439|gb|EER93583.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
          Length = 529

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 157/404 (38%), Positives = 240/404 (59%), Gaps = 16/404 (3%)

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           G +  AR +F+ +P            +R++VSWNSM+   AKAG +  A E+F+QM E +
Sbjct: 136 GDITAARAMFEAMP------------ERDVVSWNSMVAGLAKAGHLDEAIELFDQMPETN 183

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
             SWN ++SG++    + +A  LF +MP  + ++W  M+SGYA+ G+++ A + F RM  
Sbjct: 184 AASWNALVSGFMAQGHLAQAQELFERMPIRNNVSWITMISGYAKAGDVQAAANLFDRMDS 243

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG--EKPDRHTFSSILSMSSGIVDLHLGM 350
           K+L +WN+MI+    N     A+ +F +M        P+  TFSS++S  S + DL  G+
Sbjct: 244 KDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVAPNEKTFSSVISACSQLGDLRFGL 303

Query: 351 QIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            +   +    V  D  +  ALI +Y + G +  A  +F  ++  ++VVS++AMI GC  H
Sbjct: 304 WVESFMGYVGVHLDDHLRTALIDLYTKSGQMDRAFDLFRGLRS-RDVVSYSAMIVGCGMH 362

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G   EA+ LFK M   ++ P  +TF+ +LSA +HAGL+EE R  F SM ++Y I P +EH
Sbjct: 363 GKLNEAISLFKEMSKARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMSSKYKINPSMEH 422

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           +  +VDI+GR G+LE+A  LI  +P  P  +VWGALL ACR+HNN+EL +VAA    ++E
Sbjct: 423 YTIMVDILGRCGKLEEAFQLIMQIPVCPHASVWGALLLACRLHNNIELGEVAASKCFELE 482

Query: 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           P+ S  Y+LL N+YA   +WD    +R +M    + K  G SWV
Sbjct: 483 PKESGYYILLGNIYAQAKKWDKVKGLRKMMAERGLSKTPGSSWV 526



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 148/301 (49%), Gaps = 41/301 (13%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++  AR +F+ MP+RDVVSWN M++G      +G L+EA  LFD MPE +  +WN ++SG
Sbjct: 137 DITAARAMFEAMPERDVVSWNSMVAGLAK---AGHLDEAIELFDQMPETNAASWNALVSG 193

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           +   G + +A  LF  MP RN VSW  MISG+ + GDV  A   FDRM  +D  + +A++
Sbjct: 194 FMAQGHLAQAQELFERMPIRNNVSWITMISGYAKAGDVQAAANLFDRMDSKDLYAWNAMI 253

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           S   QNG   EA  +                 +N ++  +     V    K F  +   C
Sbjct: 254 SCYAQNGCAREALGI-----------------FNRMLKPHIW---VAPNEKTFSSVISAC 293

Query: 190 DRGEGNVRFKRNIVSW-------------NSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            +  G++RF   + S+              ++I  Y K+G +  A ++F  +  RD  S+
Sbjct: 294 SQ-LGDLRFGLWVESFMGYVGVHLDDHLRTALIDLYTKSGQMDRAFDLFRGLRSRDVVSY 352

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           + MI G      + EA +LF +M      P+ +T+  ++S Y+  G LE A   F  M  
Sbjct: 353 SAMIVGCGMHGKLNEAISLFKEMSKARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMSS 412

Query: 293 K 293
           K
Sbjct: 413 K 413



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 169/328 (51%), Gaps = 33/328 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++G  K   + +A +LFD+MP+ +  SWN ++SG+++    G L +A+ LF+ MP R+ 
Sbjct: 159 MVAGLAKAGHLDEAIELFDQMPETNAASWNALVSGFMA---QGHLAQAQELFERMPIRNN 215

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
           V+W T+ISGYAK G+++ A  LF+ M ++++ +WNAMIS + QNG    A+  F+RM   
Sbjct: 216 VSWITMISGYAKAGDVQAAANLFDRMDSKDLYAWNAMISCYAQNGCAREALGIFNRMLKP 275

Query: 118 ---PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
                 +  + S+++S   Q G+L     V    G      +D +R    LI  Y + G+
Sbjct: 276 HIWVAPNEKTFSSVISACSQLGDLRFGLWVESFMGYVGVHLDDHLR--TALIDLYTKSGQ 333

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LE 230
           ++ A  LF        RG   +R  R++VS+++MI+     G +  A  +F++M    ++
Sbjct: 334 MDRAFDLF--------RG---LR-SRDVVSYSAMIVGCGMHGKLNEAISLFKEMSKARID 381

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALD 285
            +  ++  ++S Y H   +EEA   F  M      +P    +  MV    + G LE A  
Sbjct: 382 PNAVTFVGLLSAYSHAGLLEEARACFTSMSSKYKINPSMEHYTIMVDILGRCGKLEEAFQ 441

Query: 286 FFKRMPQKNLVS-WNSMIAGCETNKDYE 312
              ++P     S W +++  C  + + E
Sbjct: 442 LIMQIPVCPHASVWGALLLACRLHNNIE 469


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 198/634 (31%), Positives = 326/634 (51%), Gaps = 85/634 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGF---------------- 44
           +++ YV    +  A KLFDEMP  + VS+  +  G+  SR   F                
Sbjct: 44  LLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGF--SRSHQFQRARRLLLRLFREGYE 101

Query: 45  ----------------------LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRL 82
                                 L    Y++ +  + D      +I  Y+  G ++ A ++
Sbjct: 102 VNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQV 161

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAA 142
           F+ +  +++VSW  M++ + +N    +++  F +M        +  +S  +++    EA 
Sbjct: 162 FDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAF 221

Query: 143 RV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           +V   +  C  +     DL      L+  Y + G + EA++ F+++P            K
Sbjct: 222 KVGKSVHGCALKVCYDRDLYVGI-ALLELYTKSGEIAEAQQFFEEMP------------K 268

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-----DTFSWNTMISG-----------Y 243
            +++ W+ MI  YA++     A E+F +M +      + F++ +++              
Sbjct: 269 DDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQ 328

Query: 244 IH--VLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           IH  VL +   SN+FV          NA++  YA+ G +E ++  F    +KN V+WN++
Sbjct: 329 IHSCVLKVGLDSNVFVS---------NALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTI 379

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
           I G     D E A+ LF  M     +P   T+SS+L  S+ +V L  G QIH +  KT+ 
Sbjct: 380 IVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMY 439

Query: 362 -PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
             D  + N+LI MYA+CG I +AR+ F++M   ++ VSWNA+I G + HG   EAL LF 
Sbjct: 440 NKDSVVANSLIDMYAKCGRIDDARLTFDKMDK-QDEVSWNALICGYSIHGLGMEALNLFD 498

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M+     P  +TF+ VLSAC++AGL+++GR HFKSM+ +YGIEP IEH+  +V ++GR 
Sbjct: 499 MMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRS 558

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           G+ ++A+ LI  +PF+P   VW ALLGAC +H N++L +V A+ ++++EP++   +VLL 
Sbjct: 559 GQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLS 618

Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           NMYA   RWD+   VR  MK   +KK  G SWV+
Sbjct: 619 NMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVE 652



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 232/503 (46%), Gaps = 48/503 (9%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDV--------ANA 110
           D    N +++ Y   G +E+A +LF+ MP  N VS+  +  GF ++              
Sbjct: 37  DLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLF 96

Query: 111 IEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG--GEDLVRAYNTLIVG 168
            E ++      +  L  LVS  + +  L   A V  K G + D   G  L+ AY+     
Sbjct: 97  REGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVY-KLGHQADAFVGTALIDAYSVC--- 152

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
               G V+ AR++FD I            + +++VSW  M+ CYA+      +  +F QM
Sbjct: 153 ----GNVDAARQVFDGI------------YFKDMVSWTGMVACYAENYCHEDSLLLFCQM 196

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNL-------FVKMPHP-DTLTWNAMVSGYAQIGNL 280
                   N  IS  +   +  EA  +        +K+ +  D     A++  Y + G +
Sbjct: 197 RIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEI 256

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSILSM 339
             A  FF+ MP+ +L+ W+ MI+    +   + A++LF +M Q     P+  TF+S+L  
Sbjct: 257 AEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQA 316

Query: 340 SSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            + +V L+LG QIH  V K  +  +V ++NAL+ +YA+CG I  +  +F      KN V+
Sbjct: 317 CASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTG-STEKNEVA 375

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSM 457
           WN +I G    G   +AL LF +M    + PT +T+ SVL A A    +E GRQ H  ++
Sbjct: 376 WNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTI 435

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517
              Y  +  + +  SL+D+  + GR++DA      M  + D+  W AL+    +H    L
Sbjct: 436 KTMYNKDSVVAN--SLIDMYAKCGRIDDARLTFDKMD-KQDEVSWNALICGYSIHG---L 489

Query: 518 AQVAAEALMKVEPENSTPYVLLY 540
              A      ++  NS P  L +
Sbjct: 490 GMEALNLFDMMQQSNSKPNKLTF 512


>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
 gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
          Length = 643

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 179/600 (29%), Positives = 308/600 (51%), Gaps = 68/600 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY---------------ISSRG---- 41
           ++  Y K   +  AR++FD + +R++ SW +M+  Y               I SRG    
Sbjct: 53  LVQAYGKCGSVRDAREVFDRIQRRNIFSWTIMLGAYADNGHGREALGLFREIQSRGMAID 112

Query: 42  -------------SGFLEEARYLF----DIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
                        +G LEE R +      +  E + +    ++S Y K G +EEA  +F 
Sbjct: 113 NVTLVSALKACAVAGDLEEGRGIHASARSLGYESEIIVATALVSMYGKCGHLEEAKAVFA 172

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
           ++  RN VSWNAM++ + QNG    A+  +  M       D+ +  +++ G    GE + 
Sbjct: 173 TLVERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGW--KGEGEH 230

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             R+  +      G    +   N L+  YG  GRV++AR +FD I             ++
Sbjct: 231 GTRIHDQVLESGFGSNTTLA--NALVSMYGSGGRVDDARYVFDGIA------------EK 276

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM-------LERDTFSWNTMISGYIHVLDMEEAS 253
            +VSWN+M+  YA+ G    A ++F +M       +E ++ ++  ++        +E   
Sbjct: 277 TVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMRRALVEPNSVTFVNLLVACAATGFLEAGR 336

Query: 254 NLFVKMPHPDTLT----WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            +  ++     L+      A+++ Y++ GNL LA   F  +P KNLVSWN +I     + 
Sbjct: 337 KIHAEVASLGLLSTLSVGGALINMYSECGNLVLAKSVFDSVPHKNLVSWNVLIGSYAGDG 396

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINN 368
           D + A+ +  +M++EG KPD+ TF S+L   S    L  G  IH ++  + +  D  I  
Sbjct: 397 DGKEALGVHQKMELEGLKPDKFTFISVLHACSASEALAEGKAIHALIAASGLERDEAIGT 456

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           ALI +Y +CG++ +AR +F +MK  +N+V+WN+M+    + G   + +E+   M    ++
Sbjct: 457 ALINLYGKCGSLEQARNVFLDMKSRRNLVTWNSMLAAACTKGGLEDCVEIIHMMGLEGIM 516

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P  +TF+SVL AC+H G +++G   F S   +YGI    +H+  +VDI+GR GRLE+A +
Sbjct: 517 PDELTFLSVLFACSHGGSIQQGLDLFLSAGVDYGIATNTKHYVCVVDILGRVGRLEEAQE 576

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           ++  MPF+ +   W  LLGACR+H + E  + AA+ +++++P+N+ PY LL  M++  GR
Sbjct: 577 VLNRMPFQANDVAWMTLLGACRIHRDFEQGRRAADYVIELDPQNAAPYALLSTMFSVAGR 636



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 145/566 (25%), Positives = 253/566 (44%), Gaps = 93/566 (16%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR--- 120
           N ++  Y K G + +A  +F+ +  RN+ SW  M+  +  NG    A+  F  +  R   
Sbjct: 51  NLLVQAYGKCGSVRDAREVFDRIQRRNIFSWTIMLGAYADNGHGREALGLFREIQSRGMA 110

Query: 121 -DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            D+ +L + +      G+L+E     +   +R  G E  +     L+  YG+ G +EEA+
Sbjct: 111 IDNVTLVSALKACAVAGDLEEGRG--IHASARSLGYESEIIVATALVSMYGKCGHLEEAK 168

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFS 235
            +F  +             +RN VSWN+M+  YA+ G    A  ++  M    ++ D  +
Sbjct: 169 AVFATL------------VERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATT 216

Query: 236 WNTMISGY---------IH--VLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
           + +++ G+         IH  VL+    SN         T   NA+VS Y   G ++ A 
Sbjct: 217 FVSVLDGWKGEGEHGTRIHDQVLESGFGSN---------TTLANALVSMYGSGGRVDDAR 267

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ------VEGEKPDRHTFSSILS 338
             F  + +K +VSWN+M+     N  Y  A+ LF +M       VE   P+  TF ++L 
Sbjct: 268 YVFDGIAEKTVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMRRALVE---PNSVTFVNLLV 324

Query: 339 MSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
             +    L  G +IH ++ +  ++  + +  ALI MY+ CG +V A+ +F+ +   KN+V
Sbjct: 325 ACAATGFLEAGRKIHAEVASLGLLSTLSVGGALINMYSECGNLVLAKSVFDSVP-HKNLV 383

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWN +IG  A  G   EAL + + M    + P   TFISVL AC+ +  + EG+    ++
Sbjct: 384 SWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACSASEALAEGKA-IHAL 442

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE- 516
           +   G+E       +L+++ G+ G LE A ++   M    +   W ++L A      +E 
Sbjct: 443 IAASGLERDEAIGTALINLYGKCGSLEQARNVFLDMKSRRNLVTWNSMLAAACTKGGLED 502

Query: 517 ----LAQVAAEALMKVE--------------------------------PENSTPYVLLY 540
               +  +  E +M  E                                  N+  YV + 
Sbjct: 503 CVEIIHMMGLEGIMPDELTFLSVLFACSHGGSIQQGLDLFLSAGVDYGIATNTKHYVCVV 562

Query: 541 NMYADVGRWDDANEV--RLLMKSNNI 564
           ++   VGR ++A EV  R+  ++N++
Sbjct: 563 DILGRVGRLEEAQEVLNRMPFQANDV 588



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 133/313 (42%), Gaps = 43/313 (13%)

Query: 202 IVSWNSMIMCYAKAGDVVSAR----EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           I S  S++   A A D+ +A+    EI       D +  N ++  Y     + +A  +F 
Sbjct: 12  ISSHASILRDCASARDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFD 71

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           ++   +  +W  M+  YA  G+   AL  F+                             
Sbjct: 72  RIQRRNIFSWTIMLGAYADNGHGREALGLFR----------------------------- 102

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYAR 376
             ++Q  G   D  T  S L   +   DL  G  IH          ++ +  AL++MY +
Sbjct: 103 --EIQSRGMAIDNVTLVSALKACAVAGDLEEGRGIHASARSLGYESEIIVATALVSMYGK 160

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG + EA+ +F  + + +N VSWNAM+   A +G   EA+ L++ M    + P   TF+S
Sbjct: 161 CGHLEEAKAVFATL-VERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVS 219

Query: 437 VLSACAHAGLVEEG-RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
           VL      G  E G R H + + + +G    + +  +LV + G  GR++DA  +  G+  
Sbjct: 220 VLDGWKGEG--EHGTRIHDQVLESGFGSNTTLAN--ALVSMYGSGGRVDDARYVFDGIA- 274

Query: 496 EPDKAVWGALLGA 508
           E     W A+L A
Sbjct: 275 EKTVVSWNAMLTA 287



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 42/244 (17%)

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           D  + N L+  Y +CG++ +AR +F+ ++  +N+ SW  M+G  A +G   EAL LF+ +
Sbjct: 46  DRYLGNLLVQAYGKCGSVRDAREVFDRIQR-RNIFSWTIMLGAYADNGHGREALGLFREI 104

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
           +S  +    +T +S L ACA AG +EEGR    +     G E  I    +LV + G+ G 
Sbjct: 105 QSRGMAIDNVTLVSALKACAVAGDLEEGRG-IHASARSLGYESEIIVATALVSMYGKCGH 163

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA------------------------ 518
           LE+A  +   +  E ++  W A+L A   + + E A                        
Sbjct: 164 LEEAKAVFATL-VERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLD 222

Query: 519 ----------QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPT 568
                     ++  + L      N+T    L +MY   GR DDA  V      + I + T
Sbjct: 223 GWKGEGEHGTRIHDQVLESGFGSNTTLANALVSMYGSGGRVDDARYV-----FDGIAEKT 277

Query: 569 GYSW 572
             SW
Sbjct: 278 VVSW 281


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 178/549 (32%), Positives = 297/549 (54%), Gaps = 27/549 (4%)

Query: 41  GSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISG 100
           G   L  AR +FD +P+ D   +N++I  Y+ +G  +EAL L   +  R ++     +  
Sbjct: 53  GDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPF 112

Query: 101 FLQNGDVANAIEFFDRMPG--------RDSASLSALVSGLIQNGELDEAARVLVKCGSRC 152
            L+    A A E      G        R     +AL+      G L ++ R+  +     
Sbjct: 113 VLKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHR 172

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
           +     V ++NT+I G  Q G   EA  LF ++     R +G +    ++ ++ S+++  
Sbjct: 173 N-----VVSWNTMIGGCAQAGETSEACALFREM-----RRQGVLA---DVFTFVSLLLVC 219

Query: 213 AKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN 268
           +K G++   R +   ML      D    N ++  Y    D+  A   F  MP  + ++W 
Sbjct: 220 SKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWT 279

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           +M+   A+ G+++ A D+F++MP++N++SWN+MI+       +   + L+ +M+  G  P
Sbjct: 280 SMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTP 339

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIF 387
           D  T + +LS+     DL  G  IH  +  +   P V + N+LI MYARCG +  +  +F
Sbjct: 340 DEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLF 399

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
            EM   KN +SWN +IG  A HG A EA+  F++M S    P  ITF+ +LSAC+H GL+
Sbjct: 400 TEMPN-KNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLL 458

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           E+G+ +FK+M + Y ++P +EH+A +VD++GRHG L  A+DLIK MP +PD  VWGAL+G
Sbjct: 459 EDGQYYFKAMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIG 518

Query: 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
           ACR+H +VE+ ++A + L+++E  N   +VL+ N+  +  +W+D   +R LM+    KK 
Sbjct: 519 ACRIHGHVEIGKLAIKQLLELEGINGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKD 578

Query: 568 TGYSWVDFS 576
            G S ++ +
Sbjct: 579 MGVSSIEIN 587



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 117/416 (28%), Positives = 179/416 (43%), Gaps = 85/416 (20%)

Query: 38  SSRGSGFLEEARYLF-DIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNA 96
           SS  +G L ++R LF ++ P R+ V+WNT+I G A+ GE  EA  LF  M  + V++   
Sbjct: 151 SSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLA--- 207

Query: 97  MISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
                                   D  +  +L+    + G L E  R LV C     G  
Sbjct: 208 ------------------------DVFTFVSLLLVCSKEGNL-EVGR-LVHCHMLASGSR 241

Query: 157 -DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
            DL+   N L+  YG+ G +  A + FD +P+            +N+VSW SM+   AK 
Sbjct: 242 VDLILG-NALVDMYGKCGDLWMAHRCFDVMPI------------KNVVSWTSMLCALAKH 288

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT----- 266
           G V +AR+ FEQM ER+  SWN MIS Y+      E   L+ +M      PD +T     
Sbjct: 289 GSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVL 348

Query: 267 ------------------------------WNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
                                          N+++  YA+ G ++ ++  F  MP KN +
Sbjct: 349 SVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTI 408

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SWN +I     +   + A+  F  M  +   PD  TF  +LS  S    L  G    + +
Sbjct: 409 SWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAM 468

Query: 357 TK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
                V P+V     ++ +  R G + +A  + ++M +  +VV W A+IG C  HG
Sbjct: 469 RHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHG 524



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 151/340 (44%), Gaps = 63/340 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K  ++  A + FD MP ++VVSW  M+   ++  GS  ++ AR  F+ MPER+ 
Sbjct: 250 LVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCA-LAKHGS--VDAARDWFEQMPERNI 306

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL----QNGDVANAIEFFDR 116
           ++WN +IS Y + G   E L L+N M +  +      ++G L    QNGD+A+       
Sbjct: 307 ISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLAS------- 359

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
             GR       ++   IQ+   D    VL                 N+LI  Y + G+V+
Sbjct: 360 --GR-------MIHCYIQDSFSDPGVTVL-----------------NSLIDMYARCGQVD 393

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----D 232
            +  LF ++P             +N +SWN +I   A  G    A   F  M+      D
Sbjct: 394 TSISLFTEMP------------NKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPD 441

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFF 287
             ++  ++S   H   +E+    F  M H     P+   +  MV    + G+L  A+D  
Sbjct: 442 EITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLI 501

Query: 288 KRMPQK-NLVSWNSMIAGCETNKDYE-GAIKLFIQMQVEG 325
           K MP K ++V W ++I  C  +   E G + +   +++EG
Sbjct: 502 KDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLELEG 541



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 137/302 (45%), Gaps = 8/302 (2%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           P  +     +SG A    L  A   F R+P  +  ++NS+I     +   + A+ L   +
Sbjct: 39  PQLVASYCALSGRAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDV 98

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAI 380
              G  P+  T   +L   S        +  H +  K   +  V + NAL+   A  G++
Sbjct: 99  LRRGILPNEFTLPFVLKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSL 158

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
            ++R +F EM   +NVVSWN MIGGCA  G  +EA  LF+ MR   VL    TF+S+L  
Sbjct: 159 RDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLV 218

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C+  G +E GR     M+   G    +    +LVD+ G+ G L  A      MP + +  
Sbjct: 219 CSKEGNLEVGRLVHCHMLAS-GSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIK-NVV 276

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPE-NSTPYVLLYNMYADVGRWDDANEVRLLM 559
            W ++L A   H +V+ A+   E +    PE N   +  + + Y   GR+ +   +   M
Sbjct: 277 SWTSMLCALAKHGSVDAARDWFEQM----PERNIISWNAMISCYVQGGRFPETLGLYNRM 332

Query: 560 KS 561
           KS
Sbjct: 333 KS 334


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 185/521 (35%), Positives = 275/521 (52%), Gaps = 55/521 (10%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
           ++  Y+  GE   A  +F+    +NVV +N MI  ++ N     A+  F  M       L
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVM-------L 129

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           S        N +      VL  C      G D +R      VG           ++ D I
Sbjct: 130 SCAF-----NPDHYTFPCVLKACS-----GLDNLR------VGL----------QVHDAI 163

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
                     V    N+   N+++  Y K G +  AR++ +QM  RD  SWN+M++GY  
Sbjct: 164 V--------KVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQ 215

Query: 246 VLDMEEASNLFVKMPHPDTLTWN---------AMVSGYAQIGNLELALDFFKRMPQKNLV 296
               ++A  +  +M   D+L  N         + V  Y  + N++   + F+RM +KNL+
Sbjct: 216 SGQFDDALEICKEM---DSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLI 272

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SWN MIA    N     A+ LF+QM+  G KPD  T +S+L     +  L LG ++H+ +
Sbjct: 273 SWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYI 332

Query: 357 TK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            K  + P++ + NAL+ MYA+CG + EAR +F++M+L ++VVSW +M+      G   +A
Sbjct: 333 EKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRL-RDVVSWTSMMSAYGRSGQGYDA 391

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           + LF  M      P  I F+SVLSAC+H GL+++GR +F+ M  +YGI PRIEHFA +VD
Sbjct: 392 VALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVD 451

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           + GR G +E+A   IK MP EP++ VWGALL ACRVH+ +++  VAA+ L ++ P+ S  
Sbjct: 452 LFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGY 511

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           YVLL N+YA  G W D   VR  MK   IKK  G S V+ +
Sbjct: 512 YVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELN 552



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 200/427 (46%), Gaps = 33/427 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           ++  Y  + E + AR +FD   +++VV +NVMI  Y+++       EA  +F +M     
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNN---NLYVEALSIFQVMLSCAF 133

Query: 58  -RDCVTWNTVISGYAKTGEMEEALRLFNSMPA----RNVVSWNAMISGFLQNGDVANAIE 112
             D  T+  V+   +    +   L++ +++       N+   NA+++ + + G +  A +
Sbjct: 134 NPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARK 193

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
             D+MP RD  S +++V+G  Q+G+ D+A  +  +  S     +    A  + +V Y   
Sbjct: 194 VLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL 253

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM---- 228
             V+    +F+++             K+N++SWN MI  Y        A  +F QM    
Sbjct: 254 ENVQYIHNMFERMT------------KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECG 301

Query: 229 LERDTFSWNTMI--SGYIHVLDMEEASNLFVKMP--HPDTLTWNAMVSGYAQIGNLELAL 284
           ++ D  +  +++   G +  L +    + +++     P+ L  NA++  YA+ G LE A 
Sbjct: 302 MKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEAR 361

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
           D F +M  +++VSW SM++    +     A+ LF +M   G+ PD   F S+LS  S   
Sbjct: 362 DVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTG 421

Query: 345 DLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
            L  G    +M+T+   ++P +     ++ ++ R G + EA    ++M +  N   W A+
Sbjct: 422 LLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGAL 481

Query: 403 IGGCASH 409
           +  C  H
Sbjct: 482 LSACRVH 488



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 196/423 (46%), Gaps = 52/423 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y K   + +ARK+ D+MP RDVVSWN M++GY     SG  ++A    +I  E D 
Sbjct: 178 LVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQ---SGQFDDA---LEICKEMDS 231

Query: 61  VTWN---------TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAI 111
           +  N         + +  Y     ++    +F  M  +N++SWN MI+ ++ N     A+
Sbjct: 232 LNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAV 291

Query: 112 EFFDRMP----GRDSASLSALVSGLIQNGELDE--AARVLVKCGSRCDGGEDLVRAYNTL 165
             F +M       D+ ++++L+      G+L      R L K   + +   +L+   N L
Sbjct: 292 SLFLQMEECGMKPDAVTIASLLPAC---GDLSALFLGRRLHKYIEKGNLQPNLLLE-NAL 347

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           +  Y + G +EEAR +FDK+ +            R++VSW SM+  Y ++G    A  +F
Sbjct: 348 LDMYAKCGCLEEARDVFDKMRL------------RDVVSWTSMMSAYGRSGQGYDAVALF 395

Query: 226 EQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQ 276
            +ML+     D+ ++ +++S   H   +++  + F  M       P    +  MV  + +
Sbjct: 396 AKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGR 455

Query: 277 IGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE-GAIKLFIQMQVEGEKPDRHTFS 334
            G +E A  F K+MP + N   W ++++ C  +   + G +   +  Q+  ++   +   
Sbjct: 456 AGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLL 515

Query: 335 SILSMSSG----IVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM 390
           S +   +G    ++++   M+   +     I +V +N  + T  A      +A+ I+ E+
Sbjct: 516 SNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGEL 575

Query: 391 KLL 393
            +L
Sbjct: 576 DVL 578


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 237/367 (64%), Gaps = 4/367 (1%)

Query: 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN 268
           +MCY     V     +F+   + +T   N+++  Y+    +++A  +F +M   D ++WN
Sbjct: 130 LMCYDLGKQVHG--HVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWN 187

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
            ++SG+ ++G +  A   F+ M  K + SW ++++G      Y  A++ F +MQ+ G +P
Sbjct: 188 TLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEP 247

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIF 387
           D  +  S+L   + +  L LG  IH    K   + ++ + NALI MYA+CG+I E R +F
Sbjct: 248 DEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLF 307

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
           ++M   ++V+SW+ MI G A+HG A EA+ELF+ M+  K+ P  ITF+ +LSACAHAGL+
Sbjct: 308 DQMNE-RDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLL 366

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
            EG ++F+SM  +Y IEP +EH+  LV+++G  GRL+ A++LIK MP +PD A+WG+LL 
Sbjct: 367 NEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLS 426

Query: 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
           +CR H+N+E+A +A E L+++EP ++  YVLL N+YAD+G+WD  + +R LM+S ++KK 
Sbjct: 427 SCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKT 486

Query: 568 TGYSWVD 574
            G S ++
Sbjct: 487 PGCSSIE 493



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 150/307 (48%), Gaps = 31/307 (10%)

Query: 23  QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRL 82
           + + V  N ++  Y+       L++A  +F+ M ERD V+WNT+ISG+ + G+M  A  +
Sbjct: 149 KSNTVVENSLVEMYVKCDS---LDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAI 205

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGEL 138
           F  M  + + SW A++SG+ + G  A+A+EFF RM       D  SL +++    Q G L
Sbjct: 206 FEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGAL 265

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
           +    +         G    +   N LI  Y + G ++E R+LFD++             
Sbjct: 266 ELGKWIHFYADKA--GFLRNICVCNALIEMYAKCGSIDEGRRLFDQMN------------ 311

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASN 254
           +R+++SW++MI+  A  G    A E+F++M    +E +  ++  ++S   H   + E   
Sbjct: 312 ERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLR 371

Query: 255 LFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETN 308
            F  M       P    +  +V+     G L+ AL+  K+MP K +   W S+++ C ++
Sbjct: 372 YFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSH 431

Query: 309 KDYEGAI 315
            + E A+
Sbjct: 432 SNLEIAV 438



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 148/300 (49%), Gaps = 35/300 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  YVK   +  A K+F+EM +RD VSWN +ISG++     G +  AR +F+ M ++  
Sbjct: 158 LVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVR---LGQMRRARAIFEEMQDKTI 214

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNV----VSWNAMISGFLQNG--DVANAIEFF 114
            +W  ++SGYA+ G   +AL  F  M    +    +S  +++    Q G  ++   I F+
Sbjct: 215 FSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFY 274

Query: 115 DRMPG--RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
               G  R+    +AL+    + G +DE  R+  +   R     D++ +++T+IVG    
Sbjct: 275 ADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNER-----DVI-SWSTMIVGLANH 328

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           GR  EA +LF ++           + + NI+++  ++   A AG +      FE M +RD
Sbjct: 329 GRAHEAIELFQEMQ--------KAKIEPNIITFVGLLSACAHAGLLNEGLRYFESM-KRD 379

Query: 233 TFSWNTMISGYIHVLD-------MEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELAL 284
            ++    +  Y  +++       +++A  L  KMP  PD+  W +++S      NLE+A+
Sbjct: 380 -YNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAV 438



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 139/298 (46%), Gaps = 22/298 (7%)

Query: 50  YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVAN 109
           ++F    + + V  N+++  Y K   +++A ++F  M  R+ VSWN +ISG ++ G +  
Sbjct: 142 HVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRR 201

Query: 110 AIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
           A   F+ M  +   S +A+VSG  + G   +A     +   +  G E    +  +++   
Sbjct: 202 ARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRR--MQMVGIEPDEISLVSVLPAC 259

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
            Q G +E    L   I    D+      F RNI   N++I  YAK G +   R +F+QM 
Sbjct: 260 AQLGALE----LGKWIHFYADKAG----FLRNICVCNALIEMYAKCGSIDEGRRLFDQMN 311

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALD 285
           ERD  SW+TMI G  +     EA  LF +M      P+ +T+  ++S  A  G L   L 
Sbjct: 312 ERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLR 371

Query: 286 FFKRMPQKNLVSWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
           +F+ M +   +       GC  N        + A++L  +M +   KPD   + S+LS
Sbjct: 372 YFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPM---KPDSAIWGSLLS 426



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 149/361 (41%), Gaps = 80/361 (22%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
           L + +F    M+    H  + E A+ LF ++  P+   +NAM+  Y              
Sbjct: 42  LSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKH------------ 89

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM--QVEGEK---PDRHTFSSILSMSSGI 343
                              NK Y  AI ++ QM     GE    PD+ TF  ++   +G+
Sbjct: 90  -------------------NKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGL 130

Query: 344 VDLHLGMQIHQMVTK-TVIPDVPINNALITMYARC------------------------- 377
           +   LG Q+H  V K     +  + N+L+ MY +C                         
Sbjct: 131 MCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLI 190

Query: 378 ------GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
                 G +  AR IFEEM+  K + SW A++ G A  G   +ALE F+ M+   + P  
Sbjct: 191 SGHVRLGQMRRARAIFEEMQ-DKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDE 249

Query: 432 ITFISVLSACAHAGLVEEGR-QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
           I+ +SVL ACA  G +E G+  HF +  ++ G    I    +L+++  + G +++   L 
Sbjct: 250 ISLVSVLPACAQLGALELGKWIHFYA--DKAGFLRNICVCNALIEMYAKCGSIDEGRRLF 307

Query: 491 KGMPFEPDKAVWGALLGAC----RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
             M  E D   W  ++       R H  +EL Q   +A  K+EP N   +V L +  A  
Sbjct: 308 DQMN-ERDVISWSTMIVGLANHGRAHEAIELFQEMQKA--KIEP-NIITFVGLLSACAHA 363

Query: 547 G 547
           G
Sbjct: 364 G 364


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 185/521 (35%), Positives = 275/521 (52%), Gaps = 55/521 (10%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
           ++  Y+  GE   A  +F+    +NVV +N MI  ++ N     A+  F  M       L
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVM-------L 129

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           S        N +      VL  C      G D +R      VG           ++ D I
Sbjct: 130 SCAF-----NPDHYTFPCVLKACS-----GLDNLR------VGL----------QVHDAI 163

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
                     V    N+   N+++  Y K G +  AR++ +QM  RD  SWN+M++GY  
Sbjct: 164 V--------KVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQ 215

Query: 246 VLDMEEASNLFVKMPHPDTLTWN---------AMVSGYAQIGNLELALDFFKRMPQKNLV 296
               ++A  +  +M   D+L  N         + V  Y  + N++   + F+RM +KNL+
Sbjct: 216 SGQFDDALEICKEM---DSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLI 272

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SWN MIA    N     A+ LF+QM+  G KPD  T +S+L     +  L LG ++H+ +
Sbjct: 273 SWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYI 332

Query: 357 TK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            K  + P++ + NAL+ MYA+CG + EAR +F++M+L ++VVSW +M+      G   +A
Sbjct: 333 EKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRL-RDVVSWTSMMSAYGRSGQGYDA 391

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           + LF  M      P  I F+SVLSAC+H GL+++GR +F+ M  +YGI PRIEHFA +VD
Sbjct: 392 VALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVD 451

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           + GR G +E+A   IK MP EP++ VWGALL ACRVH+ +++  VAA+ L ++ P+ S  
Sbjct: 452 LFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGY 511

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           YVLL N+YA  G W D   VR  MK   IKK  G S V+ +
Sbjct: 512 YVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELN 552



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 201/427 (47%), Gaps = 33/427 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           ++  Y  + E + AR +FD   +++VV +NVMI  Y+++       EA  +F +M     
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNN---NLYVEALSIFQVMLSCAF 133

Query: 58  -RDCVTWNTVISGYAKTGEMEEALRLFNSMPA----RNVVSWNAMISGFLQNGDVANAIE 112
             D  T+  V+   +    +   L++ +++       N+   NA+++ + + G +  A +
Sbjct: 134 NPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARK 193

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
             D+MP RD  S +++V+G  Q+G+ D+A  +  +  S     +    A  + +V Y   
Sbjct: 194 VLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL 253

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM---- 228
             V+    +F+++             K+N++SWN MI  Y        A  +F QM    
Sbjct: 254 ENVQYIHNMFERMT------------KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECG 301

Query: 229 LERDTFSWNTMI--SGYIHVLDMEEASNLFVKMPH--PDTLTWNAMVSGYAQIGNLELAL 284
           ++ D  +  +++   G +  L +    + +++  +  P+ L  NA++  YA+ G LE A 
Sbjct: 302 MKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEAR 361

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
           D F +M  +++VSW SM++    +     A+ LF +M   G+ PD   F S+LS  S   
Sbjct: 362 DVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTG 421

Query: 345 DLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
            L  G    +M+T+   ++P +     ++ ++ R G + EA    ++M +  N   W A+
Sbjct: 422 LLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGAL 481

Query: 403 IGGCASH 409
           +  C  H
Sbjct: 482 LSACRVH 488



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 196/423 (46%), Gaps = 52/423 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++ Y K   + +ARK+ D+MP RDVVSWN M++GY     SG  ++A    +I  E D 
Sbjct: 178 LVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQ---SGQFDDA---LEICKEMDS 231

Query: 61  VTWN---------TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAI 111
           +  N         + +  Y     ++    +F  M  +N++SWN MI+ ++ N     A+
Sbjct: 232 LNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAV 291

Query: 112 EFFDRMP----GRDSASLSALVSGLIQNGELDE--AARVLVKCGSRCDGGEDLVRAYNTL 165
             F +M       D+ ++++L+      G+L      R L K   + +   +L+   N L
Sbjct: 292 SLFLQMEECGMKPDAVTIASLLPAC---GDLSALFLGRRLHKYIEKGNLRPNLLLE-NAL 347

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
           +  Y + G +EEAR +FDK+ +            R++VSW SM+  Y ++G    A  +F
Sbjct: 348 LDMYAKCGCLEEARDVFDKMRL------------RDVVSWTSMMSAYGRSGQGYDAVALF 395

Query: 226 EQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQ 276
            +ML+     D+ ++ +++S   H   +++  + F  M       P    +  MV  + +
Sbjct: 396 AKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGR 455

Query: 277 IGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE-GAIKLFIQMQVEGEKPDRHTFS 334
            G +E A  F K+MP + N   W ++++ C  +   + G +   +  Q+  ++   +   
Sbjct: 456 AGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLL 515

Query: 335 SILSMSSG----IVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM 390
           S +   +G    ++++   M+   +     I +V +N  + T  A      +A+ I+ E+
Sbjct: 516 SNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGEL 575

Query: 391 KLL 393
            +L
Sbjct: 576 DVL 578


>gi|115474919|ref|NP_001061056.1| Os08g0162200 [Oryza sativa Japonica Group]
 gi|28564637|dbj|BAC57819.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623025|dbj|BAF22970.1| Os08g0162200 [Oryza sativa Japonica Group]
 gi|125602282|gb|EAZ41607.1| hypothetical protein OsJ_26139 [Oryza sativa Japonica Group]
 gi|215741371|dbj|BAG97866.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 535

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 160/427 (37%), Positives = 250/427 (58%), Gaps = 17/427 (3%)

Query: 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
           G    + + N+L+    + G +  AR LFD++PV            R++VSWNSM+   A
Sbjct: 122 GAHSFLVSRNSLLASLLRSGDLAAARALFDRMPV------------RDVVSWNSMVAGLA 169

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
           KAG + +A E+F++M ER+  SWN ++ GYI   D+ +A  LF +MP    ++W  M+SG
Sbjct: 170 KAGHLDAAIELFDKMPERNAASWNAVMCGYIAQGDLAQARELFEQMPVRSNVSWITMISG 229

Query: 274 YAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE--KPDR 330
           YA  G++  A + F+RM  +K+L +WN+MIA    N     A+ +F +M        P+ 
Sbjct: 230 YANSGDVHAAGELFERMENKKDLYAWNAMIACYAKNGCAREALAVFNRMLKPHVWVMPNE 289

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEE 389
            TFSS++S  S + DL  G+     +    I  D  +  AL+ ++ + G I  A  +F  
Sbjct: 290 KTFSSVISACSQLGDLRFGLWAESFMGSVGIELDDHLRTALVDLHTKSGRIDRAFDLFRG 349

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           + + ++VVS++A+I GC  +G   EA+ LFK M   K+ P  +TF+ +LSA ++AGL+EE
Sbjct: 350 LGM-RDVVSYSAIIVGCGMNGKFNEAVSLFKEMSDAKISPNAVTFVGLLSAYSNAGLMEE 408

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
            R  F SM  +Y I P +EH+  +VD++GR G+L++A  LI  MP +PD ++WGALL AC
Sbjct: 409 ARACFASMTEKYKISPSMEHYTIMVDLLGRSGKLDEAYQLIMQMPMKPDASIWGALLLAC 468

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
           R+HNNVEL ++ A    ++EP  S  Y+LL N+Y++  +W+    +R +M    + K  G
Sbjct: 469 RLHNNVELGEIVASKCFELEPGESGYYILLGNIYSEANKWEKVKRLRKIMAERGLNKMPG 528

Query: 570 YSWVDFS 576
            SWV  S
Sbjct: 529 SSWVQAS 535



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 195/418 (46%), Gaps = 55/418 (13%)

Query: 5   YVKRREMAKARKLFDEMPQRD----------VVSWNVMISGYISSRGSGFLEEARYLFDI 54
           Y +  + ++A  L DE P R           +VS N +++  + S   G L  AR LFD 
Sbjct: 96  YARLPDPSRAHSLLDETPPRPPRGRAGAHSFLVSRNSLLASLLRS---GDLAAARALFDR 152

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
           MP RD V+WN++++G AK G ++ A+ LF+ MP RN  SWNA++ G++  GD+A A E F
Sbjct: 153 MPVRDVVSWNSMVAGLAKAGHLDAAIELFDKMPERNAASWNAVMCGYIAQGDLAQARELF 212

Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
           ++MP R + S   ++SG   +G++  A  +      R +  +DL  A+N +I  Y + G 
Sbjct: 213 EQMPVRSNVSWITMISGYANSGDVHAAGELF----ERMENKKDLY-AWNAMIACYAKNGC 267

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
             EA  +F+++       + +V    N  +++S+I   ++ GD+               F
Sbjct: 268 AREALAVFNRML------KPHVWVMPNEKTFSSVISACSQLGDL--------------RF 307

Query: 235 S-WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
             W     G + +                D     A+V  + + G ++ A D F+ +  +
Sbjct: 308 GLWAESFMGSVGI--------------ELDDHLRTALVDLHTKSGRIDRAFDLFRGLGMR 353

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQ 351
           ++VS++++I GC  N  +  A+ LF +M      P+  TF  +LS  S  G+++      
Sbjct: 354 DVVSYSAIIVGCGMNGKFNEAVSLFKEMSDAKISPNAVTFVGLLSAYSNAGLMEEARACF 413

Query: 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
                   + P +     ++ +  R G + EA  +  +M +  +   W A++  C  H
Sbjct: 414 ASMTEKYKISPSMEHYTIMVDLLGRSGKLDEAYQLIMQMPMKPDASIWGALLLACRLH 471



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 174/347 (50%), Gaps = 24/347 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++  ++  ++A AR LFD MP RDVVSWN M++G      +G L+ A  LFD MPER+ 
Sbjct: 133 LLASLLRSGDLAAARALFDRMPVRDVVSWNSMVAGLAK---AGHLDAAIELFDKMPERNA 189

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG- 119
            +WN V+ GY   G++ +A  LF  MP R+ VSW  MISG+  +GDV  A E F+RM   
Sbjct: 190 ASWNAVMCGYIAQGDLAQARELFEQMPVRSNVSWITMISGYANSGDVHAAGELFERMENK 249

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           +D  + +A+++   +NG   EA  V  +            + ++++I    Q G +    
Sbjct: 250 KDLYAWNAMIACYAKNGCAREALAVFNRMLKPHVWVMPNEKTFSSVISACSQLGDL---- 305

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
               +  +  +   G+V  + +     +++  + K+G +  A ++F  +  RD  S++ +
Sbjct: 306 ----RFGLWAESFMGSVGIELDDHLRTALVDLHTKSGRIDRAFDLFRGLGMRDVVSYSAI 361

Query: 240 ISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           I G        EA +LF +M      P+ +T+  ++S Y+  G +E A   F  M +K  
Sbjct: 362 IVGCGMNGKFNEAVSLFKEMSDAKISPNAVTFVGLLSAYSNAGLMEEARACFASMTEKYK 421

Query: 296 VS-----WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
           +S     +  M+     +   + A +L +QM +   KPD   + ++L
Sbjct: 422 ISPSMEHYTIMVDLLGRSGKLDEAYQLIMQMPM---KPDASIWGALL 465



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 148/299 (49%), Gaps = 34/299 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP-ERD 59
           ++ GY+ + ++A+AR+LF++MP R  VSW  MISGY +   SG +  A  LF+ M  ++D
Sbjct: 195 VMCGYIAQGDLAQARELFEQMPVRSNVSWITMISGYAN---SGDVHAAGELFERMENKKD 251

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSMPARNV------VSWNAMISGFLQNGDVANAI-- 111
              WN +I+ YAK G   EAL +FN M   +V       +++++IS   Q GD+   +  
Sbjct: 252 LYAWNAMIACYAKNGCAREALAVFNRMLKPHVWVMPNEKTFSSVISACSQLGDLRFGLWA 311

Query: 112 EFFDRMPG--RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
           E F    G   D    +ALV    ++G +D A  +    G R     D+V +Y+ +IVG 
Sbjct: 312 ESFMGSVGIELDDHLRTALVDLHTKSGRIDRAFDLFRGLGMR-----DVV-SYSAIIVGC 365

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
           G  G+  EA  LF ++         + +   N V++  ++  Y+ AG +  AR  F  M 
Sbjct: 366 GMNGKFNEAVSLFKEM--------SDAKISPNAVTFVGLLSAYSNAGLMEEARACFASMT 417

Query: 230 ERDTFS-----WNTMISGYIHVLDMEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLEL 282
           E+   S     +  M+        ++EA  L ++MP  PD   W A++       N+EL
Sbjct: 418 EKYKISPSMEHYTIMVDLLGRSGKLDEAYQLIMQMPMKPDASIWGALLLACRLHNNVEL 476


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 207/637 (32%), Positives = 322/637 (50%), Gaps = 86/637 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI-SSRGSGFLEEARYLFDIMPERD 59
           ++SG+ K   +  A+ +F +M  R+VVS N +I G +   RG    EEA  LF  M  +D
Sbjct: 325 LVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRG----EEAVELF--MEMKD 378

Query: 60  CVTWNT---------------------------------------------VISGYAKTG 74
            V  N                                              +I+ YAK G
Sbjct: 379 SVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCG 438

Query: 75  EMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-SASLSALVSGLI 133
            + +A  +F  M  ++ V+WN+MI+G  QN     A++ F  M   +   S   ++S L 
Sbjct: 439 AINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALS 498

Query: 134 QNGELDEAARVLVKCGSRCDG---GEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
               L     + V     C+G   G DL V   N L+  YG+ G V+E +K F       
Sbjct: 499 SCASL---GWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAF------- 548

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKA-GDVVSAREIFEQML----ERDTFSWNTMISGY- 243
                ++    + VSWNS+I   A +   ++ A E F  M+    + +  ++ T+++   
Sbjct: 549 -----SLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVS 603

Query: 244 ---IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWN 299
              +H L  +  + +  +    DT   NA+++ Y + G++    + F RM  +++ VSWN
Sbjct: 604 SLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWN 663

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           SMI+G   N+    A+ +   M  +G++ D  TF+++LS  + +  L  GM++H    + 
Sbjct: 664 SMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRA 723

Query: 360 VI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
            +  D+ I +AL+ MYA+CG I  A   FE M   +N+ SWN+MI G A HG  T++L+L
Sbjct: 724 CLESDIVIGSALVDMYAKCGRIDYASRFFEMMP-ARNLYSWNSMISGYARHGHGTKSLDL 782

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  M+    LP ++TF+ VLSAC+HAGLV EG  HF SM   YG+ PR+EHF+ +VD++G
Sbjct: 783 FAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLG 842

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN--NVELAQVAAEALMKVEPENSTPY 536
           R G L    D +  MP +P+  +W  +LGAC   N  N  L + AAE L+++EP N+  Y
Sbjct: 843 RVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNY 902

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +LL NMYA  G+WDD  + R+ M+   +KK  G SWV
Sbjct: 903 ILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWV 939



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 139/486 (28%), Positives = 241/486 (49%), Gaps = 63/486 (12%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D    NT+I+ YA+ G++    ++F+ MP RN+VSW+ +ISG+ +N     A E F +M 
Sbjct: 107 DLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMV 166

Query: 119 GR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDG------GEDLVRAYNTLIVG 168
                 +  +  +++    + GE        +K G +  G        + V A N LI  
Sbjct: 167 SDGFMPNHYAFGSVIRACQECGEYG------LKFGMQIHGLMSKTQYVNDVTASNVLISM 220

Query: 169 YGQR-GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
           YG   G V+ AR+ FD I            + RN+VS NSMI  Y + GD VSA +IF  
Sbjct: 221 YGNALGMVDYARRAFDSI------------WPRNLVSLNSMISVYCQRGDAVSAFDIFST 268

Query: 228 M--------LERDTFSWNTMISGYIHVLD--MEEASNLFVKMPHP----DTLTWNAMVSG 273
           M        L+ + +++ ++IS    + +  +     L  ++       D    +A+VSG
Sbjct: 269 MQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSG 328

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHT 332
           +A+ G++  A + F++M  +N+VS N +I G    K  E A++LF++M+   E  P+   
Sbjct: 329 FAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPN--- 385

Query: 333 FSSILSMSSGIVDLHL-------GMQIHQMVTKTVI--PDVPINNALITMYARCGAIVEA 383
             S + + +   + H+       G ++H  + ++ +    + I N LI MYA+CGAI +A
Sbjct: 386 --SYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDA 443

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
            ++F  M   K+ V+WN+MI G   +    EA++ F+ MR  ++ P+  T IS LS+CA 
Sbjct: 444 CVVFRLMD-NKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCAS 502

Query: 444 AGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
            G +  G Q H + +  + G++  +    +L+ + G  G +++       M  + D   W
Sbjct: 503 LGWISVGEQLHCEGL--KLGLDLDVSVSNALLALYGECGYVKECQKAFSLM-LDYDHVSW 559

Query: 503 GALLGA 508
            +L+GA
Sbjct: 560 NSLIGA 565



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 156/583 (26%), Positives = 260/583 (44%), Gaps = 90/583 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSR-------------GSGFL-- 45
           +I+ Y +  ++   RK+FDEMP R++VSW+ +ISGY  +R               GF+  
Sbjct: 114 LINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPN 173

Query: 46  ------------EEARY-------LFDIMPE----RDCVTWNTVISGYAKT-GEMEEALR 81
                       E   Y       +  +M +     D    N +IS Y    G ++ A R
Sbjct: 174 HYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARR 233

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN----GE 137
            F+S+  RN+VS N+MIS + Q GD  +A + F  M          +  GL  N    G 
Sbjct: 234 AFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKE------VMGDGLKPNEYTFGS 287

Query: 138 LDEAARVLVKCG--------SRCDGGEDLVRAY--NTLIVGYGQRGRVEEARKLFDKIPV 187
           L  A   L   G        +R +    L   Y  + L+ G+ + G +  A+ +F K+  
Sbjct: 288 LISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSY 347

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM---LERDTFSWNTMISGY- 243
                       RN+VS N +I+   +      A E+F +M   +E +  S+  +++ + 
Sbjct: 348 ------------RNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMIILTAFP 395

Query: 244 -IHVLDM-----EEASNLFVK--MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
             HVL+       E     ++  + +      N +++ YA+ G +  A   F+ M  K+ 
Sbjct: 396 EFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDS 455

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
           V+WNSMI G + NK +  A+K F +M+     P   T  S LS  + +  + +G Q+H  
Sbjct: 456 VTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCE 515

Query: 356 VTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA-SHGFAT 413
             K  +  DV ++NAL+ +Y  CG + E +  F  M L  + VSWN++IG  A S     
Sbjct: 516 GLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLM-LDYDHVSWNSLIGALADSEPSML 574

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFAS 472
           EA+E F  M      P  +TFI++L+A +   L E G+Q H   +      +  IE+  +
Sbjct: 575 EAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIEN--A 632

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
           L+   G+ G +    ++   M    D+  W +++    +HN +
Sbjct: 633 LLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISG-YIHNEL 674



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 171/365 (46%), Gaps = 62/365 (16%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  ++   N++I  YA+ GD+ S R++F++M  R+  SW+ +ISGY       EA  LF 
Sbjct: 104 FVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFR 163

Query: 258 K------MPHP-----------------------------------DTLTWNAMVSGYAQ 276
           K      MP+                                    D    N ++S Y  
Sbjct: 164 KMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGN 223

Query: 277 -IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE----GEKPDRH 331
            +G ++ A   F  +  +NLVS NSMI+      D   A  +F  MQ E    G KP+ +
Sbjct: 224 ALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEY 283

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKT----VIPDVPINNALITMYARCGAIVEARIIF 387
           TF S++S +  + +  L + + Q++T+      + D+ + +AL++ +A+ G+I  A+ IF
Sbjct: 284 TFGSLISATCSLANSGLVL-LEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIF 342

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR-SFKVLPTYITFISVLSACAHAGL 446
           ++M   +NVVS N +I G        EA+ELF  M+ S ++ P   +++ +L+A     +
Sbjct: 343 QKMS-YRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPN--SYMIILTAFPEFHV 399

Query: 447 VEEGRQHFKSMVNEYGIE-----PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
           +E G++   S V+ + I       +I     L+++  + G + DA  + + M    D   
Sbjct: 400 LENGKRK-GSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMD-NKDSVT 457

Query: 502 WGALL 506
           W +++
Sbjct: 458 WNSMI 462



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 164/339 (48%), Gaps = 24/339 (7%)

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
           V   E  E + +R  +S  +  +  +H   ++   N FV     D    N +++ YA++G
Sbjct: 70  VQHDEKIESLAQRYRYSCGSKDAEELH---LQLFKNGFVN----DLFLCNTLINIYARVG 122

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL- 337
           +L      F  MP +NLVSW+ +I+G   N+    A +LF +M  +G  P+ + F S++ 
Sbjct: 123 DLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIR 182

Query: 338 -SMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVE-ARIIFEEMKLLK 394
                G   L  GMQIH +++KT  + DV  +N LI+MY     +V+ AR  F+ +   +
Sbjct: 183 ACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSI-WPR 241

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVL-----PTYITFISVLSAC---AHAGL 446
           N+VS N+MI      G A  A ++F +M+  +V+     P   TF S++SA    A++GL
Sbjct: 242 NLVSLNSMISVYCQRGDAVSAFDIFSTMQK-EVMGDGLKPNEYTFGSLISATCSLANSGL 300

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           V    +   + V + G    +   ++LV    + G +  A ++ + M +    ++ G ++
Sbjct: 301 VL--LEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLII 358

Query: 507 GACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           G  R     E  ++  E    VE  N   Y+++   + +
Sbjct: 359 GLVRQKRGEEAVELFMEMKDSVEL-NPNSYMIILTAFPE 396


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 207/622 (33%), Positives = 319/622 (51%), Gaps = 89/622 (14%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP------ERDCVT----- 62
           A K+FDEMP+RD VSWN +I G  S  G  F EEA   F +M       + D VT     
Sbjct: 191 AMKVFDEMPERDKVSWNTVI-GLCSLHG--FYEEALGFFRVMVAAKPGIQPDLVTVVSVL 247

Query: 63  -------------------------------WNTVISGYAKTGEMEEALRLFNSMPARNV 91
                                           N ++  Y K G  + + ++F+ +  RNV
Sbjct: 248 PVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNV 307

Query: 92  VSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVK 147
           +SWNA+I+ F   G   +A++ F  M       +S ++S+++  L   GEL      L K
Sbjct: 308 ISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVL---GELG-----LFK 359

Query: 148 CGSRCDGG------EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            G    G       E  V   N+LI  Y + G    A  +F+K+ V            RN
Sbjct: 360 LGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGV------------RN 407

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS---------GYIHVLDMEEA 252
           IVSWN+MI  +A+      A E+  QM  +     N   +         G+++V   E  
Sbjct: 408 IVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNV-GKEIH 466

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           + +       D    NA+   Y++ G L LA + F  +  ++ VS+N +I G     D  
Sbjct: 467 ARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTNDSL 525

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALI 371
            +++LF +M++ G +PD  +F  ++S  + +  +  G +IH ++ + +    + + N+L+
Sbjct: 526 ESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLL 585

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            +Y RCG I  A  +F  ++  K+V SWN MI G    G    A+ LF++M+   V    
Sbjct: 586 DLYTRCGRIDLATKVFYCIQN-KDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDS 644

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           ++F++VLSAC+H GL+E+GR++FK M+ +  IEP   H+A +VD++GR G +E+A DLI+
Sbjct: 645 VSFVAVLSACSHGGLIEKGRKYFK-MMCDLNIEPTHTHYACMVDLLGRAGLMEEAADLIR 703

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
           G+   PD  +WGALLGACR+H N+EL   AAE L +++P++   Y+LL NMYA+  RWD+
Sbjct: 704 GLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKPQHCGYYILLSNMYAEAERWDE 763

Query: 552 ANEVRLLMKSNNIKKPTGYSWV 573
           AN+VR LMKS   KK  G SWV
Sbjct: 764 ANKVRELMKSRGAKKNPGCSWV 785



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/472 (27%), Positives = 235/472 (49%), Gaps = 36/472 (7%)

Query: 52  FDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAI 111
           F +  + D    NT+++ Y   G   +A+++F+ MP R+ VSWN +I     +G    A+
Sbjct: 164 FKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEAL 223

Query: 112 EFFDRM----PGRDSASLSALVSGLIQNGEL-DEAARVLVKCGSR---CDGGEDLVRAYN 163
            FF  M    PG     L  +VS L    E  D+    +V C +      GG   V+  N
Sbjct: 224 GFFRVMVAAKPGIQ-PDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGH--VKVGN 280

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
            L+  YG+ G  + ++K+FD+I             +RN++SWN++I  ++  G  + A +
Sbjct: 281 ALVDVYGKCGSEKASKKVFDEID------------ERNVISWNAIITSFSFRGKYMDALD 328

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDM-------EEASNLFVKMP-HPDTLTWNAMVSGYA 275
           +F  M++      +  IS  + VL          E     +KM    D    N+++  YA
Sbjct: 329 VFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYA 388

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           + G+  +A   F +M  +N+VSWN+MIA    N+    A++L  QMQ +GE P+  TF++
Sbjct: 389 KSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTN 448

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +L   + +  L++G +IH  + +     D+ ++NAL  MY++CG +  A+ +F     ++
Sbjct: 449 VLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNIS--VR 506

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           + VS+N +I G +    + E+L LF  MR   + P  ++F+ V+SACA+   + +G++  
Sbjct: 507 DEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIH 566

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             +V +      +    SL+D+  R GR++ A  +   +    D A W  ++
Sbjct: 567 GLLVRKL-FHTHLFVANSLLDLYTRCGRIDLATKVFYCIQ-NKDVASWNTMI 616



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/492 (23%), Positives = 221/492 (44%), Gaps = 74/492 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGF--LEEARYLFD----- 53
           ++  Y K      ++K+FDE+ +R+V+SWN +I+ + S RG     L+  R + D     
Sbjct: 282 LVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSF-SFRGKYMDALDVFRLMIDEGMRP 340

Query: 54  -------IMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLF 83
                  ++P                       E D    N++I  YAK+G    A  +F
Sbjct: 341 NSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIF 400

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD 139
           N M  RN+VSWNAMI+ F +N     A+E   +M  +    ++ + + ++    + G L+
Sbjct: 401 NKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLN 460

Query: 140 EAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
               +   +++ GS  D     +   N L   Y + G +  A+ +F+ I V         
Sbjct: 461 VGKEIHARIIRVGSSLD-----LFVSNALTDMYSKCGCLNLAQNVFN-ISV--------- 505

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA 252
              R+ VS+N +I+ Y++  D + +  +F +M    +  D  S+  ++S   ++  + + 
Sbjct: 506 ---RDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQG 562

Query: 253 SN----LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
                 L  K+ H      N+++  Y + G ++LA   F  +  K++ SWN+MI G    
Sbjct: 563 KEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMR 622

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINN 368
            + + AI LF  M+ +G + D  +F ++LS  S    +  G +  +M+    I     + 
Sbjct: 623 GELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCDLNIEPTHTHY 682

Query: 369 A-LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           A ++ +  R G + EA  +   + ++ +   W A++G C  HG     L L+ +   F++
Sbjct: 683 ACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRIHG--NIELGLWAAEHLFEL 740

Query: 428 LPTYITFISVLS 439
            P +  +  +LS
Sbjct: 741 KPQHCGYYILLS 752



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 23/225 (10%)

Query: 269 AMVSGYAQIGNLELALDFFKR--MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
           +++  YA  G+   +L  F+      ++   WN++I        ++G    +  M   G 
Sbjct: 75  SLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAGVFDG-FGTYNTMVRAGV 133

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARI 385
           KPD  T+  +L + S  V++  G ++H +  K     DV + N L+  Y  CG   +A  
Sbjct: 134 KPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMK 193

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK--VLPTYITFISVLSACAH 443
           +F+EM   ++ VSWN +IG C+ HGF  EAL  F+ M + K  + P  +T +SVL  CA 
Sbjct: 194 VFDEMP-ERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAE 252

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEH-FASLVDIVGRHGRLEDAM 487
                           E  +  RI H +A  V ++G H ++ +A+
Sbjct: 253 T---------------EDKVMARIVHCYALKVGLLGGHVKVGNAL 282



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 142/326 (43%), Gaps = 43/326 (13%)

Query: 217 DVVSAREI----FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           +V   RE+    F+   + D F  NT+++ Y +     +A  +F +MP  D ++WN ++ 
Sbjct: 152 EVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIG 211

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
             +  G  E AL FF+ M                                  G +PD  T
Sbjct: 212 LCSLHGFYEEALGFFRVMVAAK-----------------------------PGIQPDLVT 242

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVI--PDVPINNALITMYARCGAIVEARIIFEEM 390
             S+L + +   D  +   +H    K  +    V + NAL+ +Y +CG+   ++ +F+E+
Sbjct: 243 VVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEI 302

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
              +NV+SWNA+I   +  G   +AL++F+ M    + P  +T  S+L      GL + G
Sbjct: 303 D-ERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLG 361

Query: 451 RQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
            + H  S+  +  IE  +    SL+D+  + G    A  +   M    +   W A++ A 
Sbjct: 362 MEVHGFSL--KMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVR-NIVSWNAMI-AN 417

Query: 510 RVHNNVELAQVAAEALMKVEPENSTP 535
              N +E    A E + +++ +  TP
Sbjct: 418 FARNRLEYE--AVELVRQMQAKGETP 441



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 4/168 (2%)

Query: 364 VPINNALITMYARCGAIVEARIIFEE-MKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           V +  +LI  YA  G    + ++F+  +   ++   WN +I   +  G   +    + +M
Sbjct: 70  VSLCASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAG-VFDGFGTYNTM 128

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
               V P   T+  VL  C+    V +GR+    +  + G +  +    +L+   G  G 
Sbjct: 129 VRAGVKPDECTYPFVLKVCSDFVEVRKGRE-VHGVAFKLGFDGDVFVGNTLLAFYGNCGL 187

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
             DAM +   MP E DK  W  ++G C +H   E A      ++  +P
Sbjct: 188 FGDAMKVFDEMP-ERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKP 234


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 186/562 (33%), Positives = 286/562 (50%), Gaps = 62/562 (11%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D    N +I  YA+ G M+   ++F  M  RNVVSW ++I G+ +      A+  F  
Sbjct: 163 EEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFE 222

Query: 117 MPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA-YNTLIVGYGQ 171
           M        S ++  ++S   +  +LD   RV    G   + G  L +   N L+  Y +
Sbjct: 223 MVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIG---ELGLKLNKVMVNALVDMYMK 279

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G ++ A++LFD+               RN+V +N+++  YA+ G    A  I ++ML++
Sbjct: 280 CGAIDAAKRLFDEC------------VDRNLVLYNTILSNYARQGLAREALAILDEMLQQ 327

Query: 232 --------------------DTF---------------SW----NTMISGYIHVLDMEEA 252
                               D F                W    N +I  Y+     E A
Sbjct: 328 GPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMA 387

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
             +F  M +   ++WN++ +G+ + G++E A + F ++P++N V WN+MI+G      +E
Sbjct: 388 CRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFE 447

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALI 371
            AI+LF +MQ EG K DR T   I S    +    L   +H  + K  IP D+ +N AL+
Sbjct: 448 DAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALV 507

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            M+ARCG    A  +F +M   ++V +W A IG  A  G    A  LF  M    V P  
Sbjct: 508 DMFARCGDPQSAMQVFNKMTE-RDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDV 566

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           + F+ VL+AC+H G VE+G  H  S++ ++GI P+IEH+  +VD++GR G L +A DLIK
Sbjct: 567 VLFVQVLTACSHGGQVEQGL-HIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIK 625

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
            MP EP+  VWG+LL ACRVH NVE+A  AAE + ++ P+ +  +VLL N+YA  G+W D
Sbjct: 626 SMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTD 685

Query: 552 ANEVRLLMKSNNIKKPTGYSWV 573
              VRL ++   ++K  G S V
Sbjct: 686 VARVRLNLREKGVRKVPGSSSV 707



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 202/497 (40%), Gaps = 110/497 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDI------ 54
           +I  Y +   M    K+F+ M +R+VVSW  +I GY  +RG    E     F++      
Sbjct: 172 LIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGY--ARGDRPKEAVSLFFEMVEAGIR 229

Query: 55  --------------------MPERDC------------VTWNTVISGYAKTGEMEEALRL 82
                               M ER C            V  N ++  Y K G ++ A RL
Sbjct: 230 PSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRL 289

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGEL 138
           F+    RN+V +N ++S + + G    A+   D M    P  D  ++ + +S        
Sbjct: 290 FDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISA------- 342

Query: 139 DEAARVLVKCGSRC------DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
             A  V +  G  C      +G E      N +I  Y + G+ E A ++FD +       
Sbjct: 343 -SAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMS------ 395

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
                  + +VSWNS+   + + GDV SA E+F Q+ ER+   WNTMISG +     E+A
Sbjct: 396 ------NKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDA 449

Query: 253 SNLFVKMP----------------------HPDTLTW-----------------NAMVSG 273
             LF +M                        P+   W                  A+V  
Sbjct: 450 IELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDM 509

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           +A+ G+ + A+  F +M ++++ +W + I       + EGA  LF QM ++G KPD   F
Sbjct: 510 FARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLF 569

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKL 392
             +L+  S    +  G+ I  ++    I P +     ++ +  R G + EA  + + M +
Sbjct: 570 VQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPM 629

Query: 393 LKNVVSWNAMIGGCASH 409
             N V W +++  C  H
Sbjct: 630 EPNDVVWGSLLAACRVH 646



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 117/237 (49%), Gaps = 13/237 (5%)

Query: 262 PDTLTWNAMVSGYAQIGNLE------LALDFFKRMPQKN--LVSWNSMIAGCETNKDYEG 313
           P TLT   +V+  A+I + E       A + FK   + +  L   NS+I G  +      
Sbjct: 57  PSTLT--KLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGRE 114

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALIT 372
           AI L+++M V G  P+ +TF  +LS  + I     G+Q+H  V K  +  DV I N LI 
Sbjct: 115 AILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIH 174

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
            YA CG +     +FE M   +NVVSW ++I G A      EA+ LF  M    + P+ +
Sbjct: 175 FYAECGHMDHGHKVFEGMS-ERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSV 233

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
           T + V+SACA    ++ G +   + + E G++       +LVD+  + G ++ A  L
Sbjct: 234 TMVCVISACAKLRDLDMG-ERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRL 289



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 125/290 (43%), Gaps = 39/290 (13%)

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV-NCDRGEGNVRFKRNIVSWNSMIMCYAK 214
           +D +   N+LI GY   G   EA  L+ ++ V           F   ++S  + I  + +
Sbjct: 93  DDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPF---VLSGCTKIAAFCE 149

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
              V  +  + +  LE D F  N +I  Y     M+    +F  M   + ++W +++ GY
Sbjct: 150 GIQVHGS--VVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGY 207

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
           A+              P++                    A+ LF +M   G +P   T  
Sbjct: 208 AR-----------GDRPKE--------------------AVSLFFEMVEAGIRPSSVTMV 236

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLL 393
            ++S  + + DL +G ++   + +  +  +  + NAL+ MY +CGAI  A+ +F+E  + 
Sbjct: 237 CVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDEC-VD 295

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
           +N+V +N ++   A  G A EAL +   M      P  +T +S +SA A 
Sbjct: 296 RNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQ 345


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 186/607 (30%), Positives = 318/607 (52%), Gaps = 71/607 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNV---MISGYISSRGSGFLEEA--RYLFDIM 55
           M+ GY++R    KA  ++  M + +V + N    ++    S R + F  +    ++  + 
Sbjct: 97  MMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVG 156

Query: 56  PERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
            + D    NT+I+ YA  G + +A ++F+     ++VSWN+M++G++  G+V  A + +D
Sbjct: 157 FDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYD 216

Query: 116 RMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
           RMP R+  + ++++    + G ++EA ++  +   +     DLV +++ LI  Y Q    
Sbjct: 217 RMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQK-----DLV-SWSALISCYEQNEMY 270

Query: 176 EEARKLFDKIPVN---------------CDR------GE--GNVRFKRNIVSW----NSM 208
           EEA  LF ++  N               C R      G+    +  K  I ++    N++
Sbjct: 271 EEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNAL 330

Query: 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN 268
           I  Y+   +VV+A+++F +    D  SWN+MISGY+   ++E+A  LF  MP  D ++W+
Sbjct: 331 IHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWS 390

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           AM+SGYAQ                                  +   + LF +MQ+EG KP
Sbjct: 391 AMISGYAQ-------------------------------QDRFTETLVLFQEMQIEGTKP 419

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIF 387
           D     S++S  + +  L  G  IH  + K  +  ++ +   LI MY + G + +A  +F
Sbjct: 420 DETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVF 479

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
           + ++  K V +WNA+I G A +G   ++L+ F  M+   V P  ITF++VL AC H GLV
Sbjct: 480 KGLE-EKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLV 538

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           +EG +HF SM+ E+ I P I+H+  +VD++GR G L++A +LI+ MP  PD + WGALLG
Sbjct: 539 DEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLG 598

Query: 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
           AC+ + + E  +     L+++ P++    VLL N+YA  G W D  EVR +M+ + + K 
Sbjct: 599 ACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKT 658

Query: 568 TGYSWVD 574
            G S ++
Sbjct: 659 PGCSMIE 665



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 130/306 (42%), Gaps = 51/306 (16%)

Query: 214 KAGDVVSAREIFEQMLE----RDTFSWNTMI--SGYIHVLDMEEASNLFVKMPHPDTLTW 267
           K  ++    +I  QM+     +D+F+ + ++  S  +  +++ ++  +F  + +P+    
Sbjct: 35  KCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFIC 94

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           N M+ GY Q  +   A+  +K M + N+ +                              
Sbjct: 95  NTMMKGYMQRNSPCKAIWVYKFMLESNVAA------------------------------ 124

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARII 386
            D +T+  +    S  +    G  I   V K     DV I N LI MYA CG + +AR +
Sbjct: 125 -DNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKV 183

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+   +L ++VSWN+M+ G    G   EA +++  M    V+ +     S++      G 
Sbjct: 184 FDGSSVL-DMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASN----SMIVLFGKKGN 238

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP---FEPDKAVWG 503
           VEE  + F  M      +  +  +++L+    ++   E+A+ L K M       D+ V  
Sbjct: 239 VEEACKLFNEMK-----QKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVL 293

Query: 504 ALLGAC 509
           ++L AC
Sbjct: 294 SVLSAC 299


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 169/539 (31%), Positives = 278/539 (51%), Gaps = 36/539 (6%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D +  N +I  YAK GE++ A  +F  M  RNVVSW A++ GFLQ+GD    +     M 
Sbjct: 251 DTMLGNNLIDMYAKCGELDMAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMR 310

Query: 119 GRDSA-----SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
               A     +LSA +       ++     +   C     G E+     ++L++ Y + G
Sbjct: 311 AASEAAPNEYTLSASLKACCVTEDMGAGVGIHGLCVR--TGYEEHYVVASSLVLLYSKGG 368

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML---- 229
           R+ +AR++FD   +            R + +WN+MI  YA AG    A  +F +M     
Sbjct: 369 RIGDARRVFDCAGLG-----------RGLATWNAMISGYAHAGHGRDALLVFREMRRRRR 417

Query: 230 ------ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP------DTLTWNAMVSGYAQI 277
                 + D F++ +++     +    E + +   M         + +   A+V  Y + 
Sbjct: 418 RHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALVDMYVKC 477

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
           G L +A+  F+R+ +KN + W +++ G         A++LF +    G + D H  SSI+
Sbjct: 478 GRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIV 537

Query: 338 SMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
            + +    +  G Q+H    K+    DV   N+++ MY +CG   EA  +F E+   +NV
Sbjct: 538 GVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPA-RNV 596

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
           VSW  MI G   HG   EA+ +F+ MR+  V P  +T++++LSAC+HAGLV+E R++F  
Sbjct: 597 VSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSC 656

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE 516
           +  +  + P+ EH+A +VD++GR G L +A DLI+ MP EP   VW  LL ACRVH +V 
Sbjct: 657 IRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVA 716

Query: 517 LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           + + A + L+ ++ +N   YV L N++A+ G W + ++VR  M+   +KK  G SWV+ 
Sbjct: 717 VGREAGDVLLAIDGDNPVNYVTLSNVFAEAGAWRECHKVRDAMRRRGLKKQGGCSWVEI 775



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 108/472 (22%), Positives = 195/472 (41%), Gaps = 80/472 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG----FLEEARYLFDIMP 56
           +I  Y K  E+  A ++F  M  R+VVSW  ++ G++    +      L E R   +  P
Sbjct: 258 LIDMYAKCGELDMAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAP 317

Query: 57  ---------------------------------ERDCVTWNTVISGYAKTGEMEEALRLF 83
                                            E   V  ++++  Y+K G + +A R+F
Sbjct: 318 NEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVF 377

Query: 84  NSMP-ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----------DSASLSALVSGL 132
           +     R + +WNAMISG+   G   +A+  F  M  R          D  + ++L+   
Sbjct: 378 DCAGLGRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKAC 437

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG-----YGQRGRVEEARKLFDKIPV 187
              G   E A+V     +          A N ++ G     Y + GR+  A ++F+++  
Sbjct: 438 GGLGAPREGAQVHAAMAA-----SGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLE- 491

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL 247
                      ++N + W ++++ +A+ G V+ A E+F +       +   ++S  + VL
Sbjct: 492 -----------RKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVL 540

Query: 248 D----MEEASNLF---VKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
                +E+   +    VK P   D    N++V  Y + G  + A   F+ +P +N+VSW 
Sbjct: 541 ADFALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWT 600

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVT 357
           +MI G   +     A+ +F +M+  G +PD  T+ ++LS  S  G+VD            
Sbjct: 601 TMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRD 660

Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           +TV P       ++ +  R G + EAR +   M +   V  W  ++  C  H
Sbjct: 661 RTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVH 712



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 139/317 (43%), Gaps = 53/317 (16%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G L  A  +F+ +  ++ + W TV+ G+A+ G++ EAL LF                 F 
Sbjct: 478 GRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRR---------------FW 522

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
           ++G  A            D+  LS++V G++ +  L E  R +   G +   G D V A 
Sbjct: 523 RSGARA------------DAHVLSSIV-GVLADFALVEQGRQVHCYGVKSPAGTD-VSAG 568

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N+++  Y + G  +EA ++F +IP             RN+VSW +MI    K G    A 
Sbjct: 569 NSIVDMYLKCGLPDEAERMFREIPA------------RNVVSWTTMINGLGKHGLGREAV 616

Query: 223 EIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFV-----KMPHPDTLTWNAMVSG 273
            +FE+M    +E D  ++  ++S   H   ++E    F      +   P    +  MV  
Sbjct: 617 AMFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDL 676

Query: 274 YAQIGNLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYE-GAIKLFIQMQVEGEKPDRH 331
             + G L  A D  + MP +  V  W ++++ C  +KD   G     + + ++G+ P  +
Sbjct: 677 LGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNY 736

Query: 332 -TFSSILSMSSGIVDLH 347
            T S++ + +    + H
Sbjct: 737 VTLSNVFAEAGAWRECH 753


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 199/654 (30%), Positives = 311/654 (47%), Gaps = 125/654 (19%)

Query: 1   MISGYVKRREMAKARKLFDE--MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE- 57
           +I+ Y K  ++  AR LFD   M + D VSWN +IS +++    G   EA  LF  M E 
Sbjct: 186 LIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAE---GNCLEALSLFRRMQEV 242

Query: 58  --------------------------------------RDCVTWNTVISGYAKTGEMEEA 79
                                                  D    N +I+ YAK G ME+A
Sbjct: 243 GVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDA 302

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELD 139
            R+F SM  R+ VSWN ++SG +QN   ++A+ +F  M                 +G+  
Sbjct: 303 GRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQ---------------NSGQKP 347

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           +   VL                   LI   G+ G + + +++      N           
Sbjct: 348 DQVSVL------------------NLIAASGRSGNLLKGKEVHAYAIRN--------GLD 381

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
            N+   N+++  YAK   V      FE M E+D  SW T+I+GY       EA NLF K+
Sbjct: 382 SNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKV 441

Query: 260 P------------------------------H--------PDTLTWNAMVSGYAQIGNLE 281
                                          H         D +  NA+V+ Y ++G+++
Sbjct: 442 QVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHID 501

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A   F+ +  K++VSW SMI  C  N     A++LF  ++    +PD     S LS ++
Sbjct: 502 YARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATA 561

Query: 342 GIVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +  L  G +IH  ++ K    + PI ++L+ MYA CG +  +R +F  +K  ++++ W 
Sbjct: 562 NLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQ-RDLILWT 620

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           +MI     HG   +A+ LFK M    V+P +ITF+++L AC+H+GL+ EG++ F+ M   
Sbjct: 621 SMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYG 680

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           Y +EP  EH+A +VD++ R   LE+A   ++ MP +P   +W ALLGAC +H+N EL ++
Sbjct: 681 YQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGEL 740

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           AA+ L++ + ENS  Y L+ N++A  GRW+D  EVRL MK N +KK  G SW++
Sbjct: 741 AAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIE 794



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 145/544 (26%), Positives = 250/544 (45%), Gaps = 70/544 (12%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASL 125
           Y K G + +A+++F+ M  R + SWNA++  F+ +G    AIE +  M       D+ + 
Sbjct: 89  YGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTF 148

Query: 126 SALVSGLIQNGELDEAAR---VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
            +++      GE    A    V VKCG     GE  V   N LI  YG+ G +  AR LF
Sbjct: 149 PSVLKACGALGESRLGAEIHGVAVKCGY----GE-FVFVCNALIAMYGKCGDLGGARVLF 203

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNT 238
           D I +           K + VSWNS+I  +   G+ + A  +F +M E     +T+++  
Sbjct: 204 DGIMME----------KEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVA 253

Query: 239 MISGYIHVLDMEEASNLFVKM------------PHPDTLTWNAMVSGYAQIGNLELALDF 286
            + G      +E+ S  FVK+               D    NA+++ YA+ G +E A   
Sbjct: 254 ALQG------VEDPS--FVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRV 305

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F+ M  ++ VSWN++++G   N+ Y  A+  F  MQ  G+KPD+ +  ++++ S    +L
Sbjct: 306 FESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNL 365

Query: 347 HLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             G ++H    +  +  ++ I N L+ MYA+C  +      FE M   K+++SW  +I G
Sbjct: 366 LKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMH-EKDLISWTTIIAG 424

Query: 406 CASHGFATEALELFK--SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
            A + F  EA+ LF+   ++   V P  I   SVL AC  +GL     ++F   ++ Y  
Sbjct: 425 YAQNEFHLEAINLFRKVQVKGMDVDPMMIG--SVLRAC--SGL---KSRNFIREIHGYVF 477

Query: 464 EPRIEHFA---SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           +  +       ++V++ G  G ++ A    + +    D   W +++  C VHN + +   
Sbjct: 478 KRDLADIMLQNAIVNVYGEVGHIDYARRAFESIR-SKDIVSWTSMITCC-VHNGLPVE-- 533

Query: 521 AAEALMKVEPENSTP----YVLLYNMYADVGRWDDANEVR--LLMKSNNIKKPTGYSWVD 574
           A E    ++  N  P     +   +  A++       E+   L+ K   ++ P   S VD
Sbjct: 534 ALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVD 593

Query: 575 FSPC 578
              C
Sbjct: 594 MYAC 597



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 167/327 (51%), Gaps = 27/327 (8%)

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           L++ YG+ G + +A K+FD++             +R I SWN+++  +  +G  + A E+
Sbjct: 85  LVLMYGKCGSLRDAVKVFDEMS------------ERTIFSWNALMGAFVSSGKYLEAIEL 132

Query: 225 FEQM------LERDTFSWNTMISGYIHVLDM-EEASNLFVKMPHPD-TLTWNAMVSGYAQ 276
           ++ M      ++  TF       G +    +  E   + VK  + +     NA+++ Y +
Sbjct: 133 YKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGK 192

Query: 277 IGNLELALDFFK--RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
            G+L  A   F    M +++ VSWNS+I+      +   A+ LF +MQ  G   + +TF 
Sbjct: 193 CGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFV 252

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLL 393
           + L        + LGM IH  V K+    DV + NALI MYA+CG + +A  +FE M L 
Sbjct: 253 AALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESM-LC 311

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ- 452
           ++ VSWN ++ G   +   ++AL  F+ M++    P  ++ +++++A   +G + +G++ 
Sbjct: 312 RDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEV 371

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGR 479
           H  ++ N  G++  ++   +LVD+  +
Sbjct: 372 HAYAIRN--GLDSNMQIGNTLVDMYAK 396



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 16/254 (6%)

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
           H        +V  Y + G+L  A+  F  M ++ + SWN+++    ++  Y  AI+L+  
Sbjct: 76  HLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKD 135

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGA 379
           M+V G   D  TF S+L     + +  LG +IH +  K    + V + NALI MY +CG 
Sbjct: 136 MRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGD 195

Query: 380 IVEARIIFEEMKLLK-NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
           +  AR++F+ + + K + VSWN++I    + G   EAL LF+ M+   V     TF++ L
Sbjct: 196 LGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAAL 255

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA------SLVDIVGRHGRLEDAMDLIKG 492
                   V+ G       +  +G   +  HFA      +L+ +  + GR+EDA  + + 
Sbjct: 256 QGVEDPSFVKLG-------MGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFES 308

Query: 493 MPFEPDKAVWGALL 506
           M    D   W  LL
Sbjct: 309 M-LCRDYVSWNTLL 321


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 176/536 (32%), Positives = 294/536 (54%), Gaps = 40/536 (7%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR--NVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           ++  ++I+ Y+K  +M  AL +F S P    NV ++NA+ISGF+ NG      EF+ +M 
Sbjct: 73  LSITSLINMYSKCNQMNFALSIF-SDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMR 131

Query: 119 GR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
                 D  +    +   +   E+ +   +L K G   D     V   + L+  Y + G 
Sbjct: 132 NEGVIPDKFTFPCAIKACLDVLEIKKIHGLLFKFGLELD-----VFIGSALVNCYLKFGL 186

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
           +E A+  F+++P+            R++V WN+M+  YA+ G      E F +M +    
Sbjct: 187 MEHAQVAFEELPI------------RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVV 234

Query: 235 SWNTMISGYIHVLD-MEEASN------LFVKMPHPDTL-TWNAMVSGYAQIGNLELALDF 286
                ++G + V   M + +N        +KM +   +   N+++  Y +   +E AL+ 
Sbjct: 235 PSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEI 294

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F+ M +K++ SWNS+++  E   D++G ++L  +M   G +PD  T +++L   S +  L
Sbjct: 295 FEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAAL 354

Query: 347 HLGMQIH-QMVTKTV------IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
             G +IH  M+   +      I DV + NA+I MYA+CG++ +A ++FE M   K+V SW
Sbjct: 355 MHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSN-KDVASW 413

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N MI G   HG+  EALE+F  M   ++ P  +TF+ VLSAC+HAG V +GR     M +
Sbjct: 414 NIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKS 473

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
           +Y + P IEH+  ++D++GR G+L++A +L   MP E +  VW ALL ACR+H +  LA+
Sbjct: 474 KYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAE 533

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           VAA+ + ++EPE+   YVL+ N+Y  VGR+++  EVR  M+  N++K  G SW++ 
Sbjct: 534 VAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIEL 589



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 121/485 (24%), Positives = 205/485 (42%), Gaps = 70/485 (14%)

Query: 1   MISGYVKRREMAKARKLF-DEMPQRDVVSWNVMISGYISS----RGSGFLEEAR------ 49
           +I+ Y K  +M  A  +F D   + +V ++N +ISG+I++     G  F ++ R      
Sbjct: 78  LINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIP 137

Query: 50  -----------------------YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSM 86
                                   LF    E D    + +++ Y K G ME A   F  +
Sbjct: 138 DKFTFPCAIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEEL 197

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQ----NGELDEAA 142
           P R+VV WNAM++G+ Q G     +E F RM           V+G++      G+L+   
Sbjct: 198 PIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNN-G 256

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
           R++     +  G +  V   N+LI  YG+   +E+A ++F+ +             +++I
Sbjct: 257 RIIHGFAMKM-GYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMR------------EKDI 303

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLFVK 258
            SWNS++  + + GD      + ++ML    + D  +  T++    H+  +     +   
Sbjct: 304 FSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGY 363

Query: 259 M----------PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           M             D L  NA++  YA+ G++  A   F+RM  K++ SWN MI G   +
Sbjct: 364 MIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMH 423

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPI 366
                A+++F +M     KPD  TF  +LS  S  G V       +       V P +  
Sbjct: 424 GYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEH 483

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
              +I M  R G + EA  +   M +  N V W A++  C  H  A   L    + R F+
Sbjct: 484 YTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAV--LAEVAAQRVFE 541

Query: 427 VLPTY 431
           + P +
Sbjct: 542 LEPEH 546


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 160/406 (39%), Positives = 238/406 (58%), Gaps = 10/406 (2%)

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
           G    VEE R++   +      G G+  F +N     ++I  YA  G +  AR + ++ML
Sbjct: 119 GSFSGVEEGRQIHGHV---LKTGLGDDLFIQN-----TLIHLYASCGCIEDARHLLDRML 170

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKR 289
           ERD  SWN ++S Y     ME A +LF +M   +  +WN M+SGY  +G LE A   F  
Sbjct: 171 ERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGE 230

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
            P KN+VSWN+MI G      +   + LF  MQ  G KPD  T  S+LS  + +  L  G
Sbjct: 231 TPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQG 290

Query: 350 MQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
             +H  + K  I  D  +  AL+ MY++CG+I +A  +F    L K++ +WN++I G ++
Sbjct: 291 EWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSC-LRKDISTWNSIISGLST 349

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           HG    AL++F  M      P  +TF+ VLSAC+ AGL++EGR+ F  MV+ +GI+P IE
Sbjct: 350 HGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIE 409

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528
           H+  +VD++GR G LE+A +L++ MP +    VW +LLGACR H NVELA+  A+ L+++
Sbjct: 410 HYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLEL 469

Query: 529 EPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            P+ S+ +V L NMYA +GRW D  EVR  M++  ++K  G S ++
Sbjct: 470 SPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIE 515



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 155/318 (48%), Gaps = 37/318 (11%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           AR L D M +RDVVSWN ++S Y      G +E A +LFD M ER+  +WN +ISGY   
Sbjct: 162 ARHLLDRMLERDVVSWNALLSAYAER---GLMELACHLFDEMTERNVESWNFMISGYVGV 218

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALV 129
           G +EEA R+F   P +NVVSWNAMI+G+   G  +  +  F+ M       D+ +L +++
Sbjct: 219 GLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVL 278

Query: 130 SGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
           S     G L +   V   + K G   DG          L+  Y + G +E+A ++F    
Sbjct: 279 SACAHVGALSQGEWVHAYIDKNGISIDG-----FVATALVDMYSKCGSIEKALEVF---- 329

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISG 242
                   N   +++I +WNS+I   +  G    A +IF +ML    + +  ++  ++S 
Sbjct: 330 --------NSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSA 381

Query: 243 YIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL-V 296
                 ++E   +F  M H     P    +  MV    ++G LE A +  ++MPQK   V
Sbjct: 382 CSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASV 441

Query: 297 SWNSMIAGCETNKDYEGA 314
            W S++  C  + + E A
Sbjct: 442 VWESLLGACRNHGNVELA 459



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 189/412 (45%), Gaps = 67/412 (16%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV--------------S 93
           A  +F  +P  +   WNT+I  YA +   E AL +F+ M   +V+              S
Sbjct: 61  AHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGS 120

Query: 94  WNAMISG----------------FLQN---------GDVANAIEFFDRMPGRDSASLSAL 128
           ++ +  G                F+QN         G + +A    DRM  RD  S +AL
Sbjct: 121 FSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNAL 180

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
           +S   + G ++ A  +  +   R       V ++N +I GY   G +EEAR++F + PV 
Sbjct: 181 LSAYAERGLMELACHLFDEMTERN------VESWNFMISGYVGVGLLEEARRVFGETPV- 233

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYI 244
                      +N+VSWN+MI  Y+ AG       +FE M    ++ D  +  +++S   
Sbjct: 234 -----------KNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACA 282

Query: 245 HVLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           HV  + +   +   +       D     A+V  Y++ G++E AL+ F    +K++ +WNS
Sbjct: 283 HVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNS 342

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT- 359
           +I+G  T+   + A+++F +M VEG KP+  TF  +LS  S    L  G ++  ++    
Sbjct: 343 IISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVH 402

Query: 360 -VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            + P +     ++ +  R G + EA  + ++M   +  V W +++G C +HG
Sbjct: 403 GIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHG 454



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 148/364 (40%), Gaps = 67/364 (18%)

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           A VS  +    +  A   F R+P  N   WN++I     +   E A+ +F QM      P
Sbjct: 47  ASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLP 106

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIF 387
           D++TF+  L        +  G QIH  V KT +  D+ I N LI +YA CG I +AR + 
Sbjct: 107 DKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLL 166

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM------------------------- 422
           + M L ++VVSWNA++   A  G    A  LF  M                         
Sbjct: 167 DRM-LERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEAR 225

Query: 423 RSFKVLPT--YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP--------------- 465
           R F   P    +++ ++++  +HAG   E    F+ M    G++P               
Sbjct: 226 RVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDM-QHAGVKPDNCTLVSVLSACAHV 284

Query: 466 ------------------RIEHF--ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
                              I+ F   +LVD+  + G +E A+++        D + W ++
Sbjct: 285 GALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSC-LRKDISTWNSI 343

Query: 506 LGACRVHNNVELA-QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           +     H + + A Q+ +E L++    N   +V + +  +  G  D+  E+  LM   + 
Sbjct: 344 ISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHG 403

Query: 565 KKPT 568
            +PT
Sbjct: 404 IQPT 407


>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
 gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 189/540 (35%), Positives = 280/540 (51%), Gaps = 49/540 (9%)

Query: 59   DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
            D       +  + K   ++ A ++F  MP R+  +WNAM+SGF Q+G    A   F  M 
Sbjct: 692  DVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMR 751

Query: 119  GRDSASLSALVSGLIQNGELDEAARVLV---KCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
              +    S  V  LIQ+   +++ ++L      G R  G +  V   NT I  YG+ G +
Sbjct: 752  LNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRL-GVDVQVTVANTWISTYGKCGDL 810

Query: 176  EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
            + A+ +F+ I    DRG+      R +VSWNSM   Y+  G+   A  ++  ML R+ F 
Sbjct: 811  DSAKLVFEAI----DRGD------RTVVSWNSMFKAYSVFGEAFDAFGLYCLML-REEFK 859

Query: 236  WNTMISGYIHVLDMEEASNLFVKMPHPDTLTW--------------------NAMVSGYA 275
             +  +S +I         NL     +P+TLT                     N  +S Y+
Sbjct: 860  PD--LSTFI---------NLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYS 908

Query: 276  QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
            +  +   A   F  M  +  VSW  MI+G     D + A+ LF  M   GEKPD  T  S
Sbjct: 909  KSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLS 968

Query: 336  ILSMSSGIVDLHLGMQIHQM--VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLL 393
            ++S       L  G  I     +      +V I NALI MY++CG+I EAR IF+     
Sbjct: 969  LISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTP-E 1027

Query: 394  KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
            K VV+W  MI G A +G   EAL+LF  M      P +ITF++VL ACAH+G +E+G ++
Sbjct: 1028 KTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEY 1087

Query: 454  FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
            F  M   Y I P ++H++ +VD++GR G+LE+A++LI+ M  +PD  +WGALL AC++H 
Sbjct: 1088 FHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHR 1147

Query: 514  NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            NV++A+ AAE+L  +EP+ + PYV + N+YA  G WD    +R +MK  NIKK  G S +
Sbjct: 1148 NVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVI 1207



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 118/462 (25%), Positives = 193/462 (41%), Gaps = 75/462 (16%)

Query: 5    YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DIMPER 58
            +VK   +  A K+F+ MP+RD  +WN M+SG+     SG  ++A  LF      +I P  
Sbjct: 703  FVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQ---SGHTDKAFSLFREMRLNEITP-- 757

Query: 59   DCVT-----------------------------------WNTVISGYAKTGEMEEALRLF 83
            D VT                                    NT IS Y K G+++ A  +F
Sbjct: 758  DSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVF 817

Query: 84   NSMPA--RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-SASLSALV--SGLIQNGEL 138
             ++    R VVSWN+M   +   G+  +A   +  M   +    LS  +  +   QN E 
Sbjct: 818  EAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPET 877

Query: 139  DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
                R L+   +   G +  + A NT I  Y +      AR LFD            +  
Sbjct: 878  LTQGR-LIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFD------------IMT 924

Query: 199  KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME---- 250
             R  VSW  MI  YA+ GD+  A  +F  M++     D  +  ++ISG      +E    
Sbjct: 925  SRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKW 984

Query: 251  -EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
             +A          + +  NA++  Y++ G++  A D F   P+K +V+W +MIAG   N 
Sbjct: 985  IDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNG 1044

Query: 310  DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPIN 367
             +  A+KLF +M     KP+  TF ++L   +    L  G +   ++ +   + P +   
Sbjct: 1045 IFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHY 1104

Query: 368  NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            + ++ +  R G + EA  +   M    +   W A++  C  H
Sbjct: 1105 SCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIH 1146



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 135/301 (44%), Gaps = 61/301 (20%)

Query: 24   RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
            +D+ + N  IS Y  S  +     AR LFDIM  R CV+W  +ISGYA+ G+M+EAL LF
Sbjct: 895  QDIEAINTFISMYSKSEDTC---SARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALF 951

Query: 84   NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA-- 141
            ++M               +++G+  + +            +L +L+SG  + G L+    
Sbjct: 952  HAM---------------IKSGEKPDLV------------TLLSLISGCGKFGSLETGKW 984

Query: 142  --ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
              AR  +    R     D V   N LI  Y + G + EAR +FD  P            +
Sbjct: 985  IDARADIYGCKR-----DNVMICNALIDMYSKCGSIHEARDIFDNTP------------E 1027

Query: 200  RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD----TFSWNTMISGYIHVLDMEEASNL 255
            + +V+W +MI  YA  G  + A ++F +M++ D      ++  ++    H   +E+    
Sbjct: 1028 KTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEY 1087

Query: 256  FVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGCETNK 309
            F  M       P    ++ MV    + G LE AL+  + M  K     W +++  C+ ++
Sbjct: 1088 FHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHR 1147

Query: 310  D 310
            +
Sbjct: 1148 N 1148



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 52/238 (21%)

Query: 1    MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
             IS Y K  +   AR LFD M  R  VSW VMISGY      G ++EA  LF  M     
Sbjct: 903  FISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAE---KGDMDEALALFHAMIKSGE 959

Query: 57   ERDCVTWNTVISG------------------------------------YAKTGEMEEAL 80
            + D VT  ++ISG                                    Y+K G + EA 
Sbjct: 960  KPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEAR 1019

Query: 81   RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNG 136
             +F++ P + VV+W  MI+G+  NG    A++ F +M   D      +  A++     +G
Sbjct: 1020 DIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSG 1079

Query: 137  ELDEAARV--LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
             L++      ++K       G D    Y+ ++   G++G++EEA +L   +    D G
Sbjct: 1080 SLEKGWEYFHIMKQVYNISPGLD---HYSCMVDLLGRKGKLEEALELIRNMSAKPDAG 1134



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 12/134 (8%)

Query: 1    MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
            +I  Y K   + +AR +FD  P++ VV+W  MI+GY     +G   EA  LF  M + D 
Sbjct: 1005 LIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYAL---NGIFLEALKLFSKMIDLDY 1061

Query: 61   ----VTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
                +T+  V+   A +G +E+    F+ M     +S     ++ M+    + G +  A+
Sbjct: 1062 KPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEAL 1121

Query: 112  EFFDRMPGRDSASL 125
            E    M  +  A +
Sbjct: 1122 ELIRNMSAKPDAGI 1135


>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 518

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 155/379 (40%), Positives = 232/379 (61%), Gaps = 3/379 (0%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  N+V  N++++ +AK GD+  A +IF+   + D  +W+ +I+GY    D+  A  LF 
Sbjct: 138 FGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFD 197

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           +MP  D ++WN M++ Y + G +E A   F   P K++VSWN++I G         A++L
Sbjct: 198 EMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALEL 257

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP--INNALITMYA 375
           F +M   GE PD  T  S+LS  + + DL  G ++H  + +     +   + NAL+ MYA
Sbjct: 258 FDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYA 317

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +CG I +A  +F  ++  K+VVSWN++I G A HG A E+L LF+ M+  KV P  +TF+
Sbjct: 318 KCGNIGKAVRVFWLIRD-KDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFV 376

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
            VL+AC+HAG V+EG ++F  M N+Y IEP I H   +VD++GR G L++A + I  M  
Sbjct: 377 GVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFIASMKI 436

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           EP+  VW +LLGAC+VH +VELA+ A E L+++  + S  YVLL N+YA  G WD A  V
Sbjct: 437 EPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYASQGEWDGAENV 496

Query: 556 RLLMKSNNIKKPTGYSWVD 574
           R LM  N + K  G S+V+
Sbjct: 497 RKLMDDNGVTKNRGSSFVE 515



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 197/433 (45%), Gaps = 45/433 (10%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DCVTWNTVISG 69
           A ++F ++PQ D   WN  I G   S        A  L+  M +R    D  T+  V+  
Sbjct: 60  ALQMFAQIPQPDTFMWNTYIRGSSQSHDP---VHAVALYAQMDQRSVKPDNFTFPFVLKA 116

Query: 70  YAK-----TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
             K     TG      R+       NVV  N ++    + GD+  A + FD     D  +
Sbjct: 117 CTKLFWVNTGSAVHG-RVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVA 175

Query: 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK 184
            SAL++G  Q G+L  A ++  +   R     DLV ++N +I  Y + G +E AR+LFD+
Sbjct: 176 WSALIAGYAQRGDLSVARKLFDEMPKR-----DLV-SWNVMITVYTKHGEMESARRLFDE 229

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMI 240
            P+            ++IVSWN++I  Y        A E+F++M       D  +  +++
Sbjct: 230 APM------------KDIVSWNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLL 277

Query: 241 SGYIHVLDMEEASNLFVKMPHPD-----TLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           S    + D+E    +  K+   +     TL  NA+V  YA+ GN+  A+  F  +  K++
Sbjct: 278 SACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKDV 337

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ-IHQ 354
           VSWNS+I+G   +   E ++ LF +M++    PD  TF  +L+  S   ++  G +  H 
Sbjct: 338 VSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFVGVLAACSHAGNVDEGNRYFHL 397

Query: 355 MVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG--- 410
           M  K  I P +     ++ M  R G + EA      MK+  N + W +++G C  HG   
Sbjct: 398 MKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFIASMKIEPNAIVWRSLLGACKVHGDVE 457

Query: 411 FATEALELFKSMR 423
            A  A E    MR
Sbjct: 458 LAKRANEQLLRMR 470



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 173/353 (49%), Gaps = 31/353 (8%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           + K  ++  A  +FD+  + DVV+W+ +I+GY + RG   L  AR LFD MP+RD V+WN
Sbjct: 152 HAKCGDLKVATDIFDDSDKGDVVAWSALIAGY-AQRGD--LSVARKLFDEMPKRDLVSWN 208

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----R 120
            +I+ Y K GEME A RLF+  P +++VSWNA+I G++       A+E FD M G     
Sbjct: 209 VMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEMCGVGECP 268

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  ++ +L+S     G+L+   +V  K      G    +   N L+  Y + G + +A +
Sbjct: 269 DEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLG-NALVDMYAKCGNIGKAVR 327

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSW 236
           +F  I              +++VSWNS+I   A  G    +  +F +M    +  D  ++
Sbjct: 328 VFWLIR------------DKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTF 375

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
             +++   H  +++E +  F  M +     P       +V    + G L+ A +F   M 
Sbjct: 376 VGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFIASMK 435

Query: 292 -QKNLVSWNSMIAGCETNKDYEGAIKLFIQ-MQVEGEKPDRHTFSSILSMSSG 342
            + N + W S++  C+ + D E A +   Q +++ G++   +   S +  S G
Sbjct: 436 IEPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYASQG 488



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 107/417 (25%), Positives = 170/417 (40%), Gaps = 84/417 (20%)

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVV--SAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
           NV F R +V   +M M    A   V   A ++F Q+ + DTF WNT I G     D   A
Sbjct: 32  NVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDTFMWNTYIRGSSQSHDPVHA 91

Query: 253 SNLFVKMPH----PDTLTW-----------------------------------NAMVSG 273
             L+ +M      PD  T+                                   N ++  
Sbjct: 92  VALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVF 151

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           +A+ G+L++A D F    + ++V+W+++IAG     D   A KLF +M      P R   
Sbjct: 152 HAKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEM------PKR--- 202

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLL 393
                                        D+   N +IT+Y + G +  AR +F+E   +
Sbjct: 203 -----------------------------DLVSWNVMITVYTKHGEMESARRLFDEAP-M 232

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           K++VSWNA+IGG        EALELF  M      P  +T +S+LSACA  G +E G + 
Sbjct: 233 KDIVSWNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKV 292

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
              ++     +       +LVD+  + G +  A+ +   +  + D   W +++     H 
Sbjct: 293 HAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAVRVF-WLIRDKDVVSWNSVISGLAFHG 351

Query: 514 NVE--LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPT 568
           + E  L       + KV P+  T +V +    +  G  D+ N    LMK+    +PT
Sbjct: 352 HAEESLGLFREMKMTKVCPDEVT-FVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPT 407


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 175/535 (32%), Positives = 294/535 (54%), Gaps = 40/535 (7%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR--NVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           ++  ++I+ Y+K  +M  AL +F+  P    NV ++NA+ISGF+ NG      EF+ +M 
Sbjct: 73  LSITSLINMYSKCNQMNFALSIFSD-PTHEINVFAFNAIISGFITNGFPEEGFEFYQKMR 131

Query: 119 GR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
                 D  +    +   +   E+ +   +L K G   D     V   + L+  Y + G 
Sbjct: 132 NEGVIPDKFTFPCAIKACLDVLEIKKIHGLLFKFGLELD-----VFIGSALVNCYLKFGL 186

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
           +E A+  F+++P+            R++V WN+M+  YA+ G      E F +M +    
Sbjct: 187 MEHAQVAFEELPI------------RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVV 234

Query: 235 SWNTMISGYIHVLD-MEEASN------LFVKMPHPDTLTW-NAMVSGYAQIGNLELALDF 286
                ++G + V   M + +N        +KM +   +   N+++  Y +   +E AL+ 
Sbjct: 235 PSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEI 294

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F+ M +K++ SWNS+++  E   D++G ++L  +M   G +PD  T +++L   S +  L
Sbjct: 295 FEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAAL 354

Query: 347 HLGMQIH-QMVTKTV------IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
             G +IH  M+   +      I DV + NA+I MYA+CG++ +A ++FE M   K+V SW
Sbjct: 355 MHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSN-KDVASW 413

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N MI G   HG+  EALE+F  M   ++ P  +TF+ VLSAC+HAG V +GR     M +
Sbjct: 414 NIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKS 473

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
           +Y + P IEH+  ++D++GR G+L++A +L   MP E +  VW ALL ACR+H +  LA+
Sbjct: 474 KYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAE 533

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           VAA+ + ++EPE+   YVL+ N+Y  VGR+++  EVR  M+  N++K  G SW++
Sbjct: 534 VAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIE 588



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 206/490 (42%), Gaps = 80/490 (16%)

Query: 1   MISGYVKRREMAKARKLF-DEMPQRDVVSWNVMISGYISS----RGSGFLEEAR------ 49
           +I+ Y K  +M  A  +F D   + +V ++N +ISG+I++     G  F ++ R      
Sbjct: 78  LINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIP 137

Query: 50  -----------------------YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSM 86
                                   LF    E D    + +++ Y K G ME A   F  +
Sbjct: 138 DKFTFPCAIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEEL 197

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSAS--LSAL-VSGLIQNGE 137
           P R+VV WNAM++G+ Q G     +E F RM      P R + +  LS   V G + NG 
Sbjct: 198 PIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGR 257

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           +     + +       G +  V   N+LI  YG+   +E+A ++F+ +            
Sbjct: 258 IIHGFAMKM-------GYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMR----------- 299

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEAS 253
            +++I SWNS++  + + GD      + ++ML    + D  +  T++    H+  +    
Sbjct: 300 -EKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGR 358

Query: 254 NLFVKM----------PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
            +   M             D L  NA++  YA+ G++  A   F+RM  K++ SWN MI 
Sbjct: 359 EIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIM 418

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVI 361
           G   +     A+++F +M     KPD  TF  +LS  S  G V       +       V 
Sbjct: 419 GYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVA 478

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
           P +     +I M  R G + EA  +   M +  N V W A++  C  H  A   L    +
Sbjct: 479 PTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAV--LAEVAA 536

Query: 422 MRSFKVLPTY 431
            R F++ P +
Sbjct: 537 QRVFELEPEH 546


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 183/600 (30%), Positives = 289/600 (48%), Gaps = 112/600 (18%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGS-----GFLE--------EARYLFDIMPE--- 57
           ARK+FDE+P+ +  +WN +I  Y S          FL+          +Y F  + +   
Sbjct: 83  ARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAA 142

Query: 58  ---------------------RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNA 96
                                 D    N++I  Y   G+++ A ++F ++  ++VVSWN+
Sbjct: 143 EVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNS 202

Query: 97  MISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
           MI+GF+Q G    A+E F +M   D  +    + G++                S C    
Sbjct: 203 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL----------------SACAKIR 246

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           +L   +   +  Y +  RV                   NV    N+   N+M+  Y K G
Sbjct: 247 NL--EFGRQVCSYIEENRV-------------------NV----NLTLANAMLDMYTKCG 281

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQ 276
            +  A+ +F+ M E+D  +W TM+ GY    D E A  +   MP  D + WNA++S Y Q
Sbjct: 282 SIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQ 341

Query: 277 IGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
            G    AL  F  +  QKN+                               K ++ T  S
Sbjct: 342 NGKPNEALIVFHELQLQKNM-------------------------------KLNQITLVS 370

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLK 394
            LS  + +  L LG  IH  + K  I  +  + +ALI MY++CG + ++R +F  ++  +
Sbjct: 371 TLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KR 429

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           +V  W+AMIGG A HG   EA+++F  M+   V P  +TF +V  AC+H GLV+E    F
Sbjct: 430 DVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLF 489

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
             M + YGI P  +H+A +VD++GR G LE A+  I+ MP  P  +VWGALLGAC++H N
Sbjct: 490 HQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHAN 549

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + LA++A   L+++EP N   +VLL N+YA +G+W++ +E+R  M+   +KK  G S ++
Sbjct: 550 LNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIE 609



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 181/430 (42%), Gaps = 71/430 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y    ++  A K+F  + ++DVVSWN MI+G++     G  ++A  LF  M   D 
Sbjct: 172 LIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ---KGSPDKALELFKKMESEDV 228

Query: 61  ----VTWNTVISG-----------------------------------YAKTGEMEEALR 81
               VT   V+S                                    Y K G +E+A R
Sbjct: 229 KASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKR 288

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           LF++M  ++ V+W  M+ G+  + D   A E  + MP +D  + +AL+S   QNG+ +EA
Sbjct: 289 LFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEA 348

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             V  +   + +   + +   +TL     Q G +E  R +   I       +  +R   +
Sbjct: 349 LIVFHELQLQKNMKLNQITLVSTL-SACAQVGALELGRWIHSYIK------KHGIRMNFH 401

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           + S  ++I  Y+K GD+  +RE+F  + +RD F W+ MI G        EA ++F KM  
Sbjct: 402 VTS--ALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQE 459

Query: 262 ----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN----KDY-E 312
               P+ +T+  +    +  G ++ A   F +M     +        C  +      Y E
Sbjct: 460 ANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLE 519

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA--- 369
            A+K    M +    P    + ++L    G   +H  + + +M    ++   P N+    
Sbjct: 520 KAVKFIEAMPI---PPSTSVWGALL----GACKIHANLNLAEMACTRLLELEPRNDGAHV 572

Query: 370 -LITMYARCG 378
            L  +YA+ G
Sbjct: 573 LLSNIYAKLG 582


>gi|449456490|ref|XP_004145982.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 174/545 (31%), Positives = 289/545 (53%), Gaps = 43/545 (7%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN-GD 106
           A+ +FD + +++ + W+ ++ GY K   M++AL LF  +P R+VV+W  MIS + ++  +
Sbjct: 157 AKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYARSEHN 216

Query: 107 VANAIEFFD--RMPG-------------RDSASLSALVSGLIQNGELDEAARVLVKCGSR 151
               +E F   RM G             R    +  L  G + +G       +L K G  
Sbjct: 217 CKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHG-------ILTKYGFH 269

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
            D         + LI+ Y Q   ++ A+ ++D +   C +              NS++  
Sbjct: 270 FDHS-----VCSALILFYCQCEAIDNAKAVYDSMERPCLKAS------------NSLLEG 312

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMV 271
              AG +  A EIF ++ E++  S+N M+ GY     +E +  LF +M H  T + N M+
Sbjct: 313 LIFAGRINDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNTMI 372

Query: 272 SGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
           S Y++ G ++ A   F+ +  + + V+WNSMI+GC  N  +EGA+KL+I M     +  R
Sbjct: 373 SVYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGCIQNHQHEGALKLYITMCRTSVERSR 432

Query: 331 HTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEE 389
            TFS++    + +  + LG  +H   + +    +V +  +LI MYA+CG+I +A+  F  
Sbjct: 433 STFSALFQACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSFAS 492

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           +    NV ++ A+I G   HG   EA  +F  M   KV P   T + +LSAC+ AG+V+E
Sbjct: 493 V-CFPNVAAFTALINGYVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKE 551

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           G   F SM   YG+ P +EH+A +VD++GR GRL +A   I+ MP E D+ +WGALL AC
Sbjct: 552 GMTVFHSMEKCYGVIPTLEHYACVVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLNAC 611

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
               ++EL +  A+ ++ ++P+  + Y++L N+YA +G+W +   VR  + S  +KK  G
Sbjct: 612 WFWMDLELGESVAKKVLSLDPKAISAYIILSNIYAKLGKWVEKINVRRQLMSLKVKKIRG 671

Query: 570 YSWVD 574
            SW+D
Sbjct: 672 CSWID 676



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/457 (22%), Positives = 202/457 (44%), Gaps = 95/457 (20%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++ N  IS + + G ++ A  LFN MP R+VVSWN MISG+ + G  + A+     M   
Sbjct: 38  ISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASEMHCN 97

Query: 121 D----SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           +      + S+L+S    +G   E                   + ++ L++  G      
Sbjct: 98  NVKLNETTFSSLLSICAHSGCSSEG------------------KQFHCLVLKSGL----- 134

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
              ++F+++      G   V F             YA   D+  A+++F+++ +++   W
Sbjct: 135 ---QIFERV------GSALVYF-------------YANINDISGAKQVFDELHDKNDLLW 172

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           + ++ GY+    M++A +LF+K+P  D + W  M+S YA+                    
Sbjct: 173 DLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYAR-------------------- 212

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
                     +  + +  ++LF  M++ GE +P+  TF S++     +  L  G  +H +
Sbjct: 213 ----------SEHNCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHGI 262

Query: 356 VTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFA 412
           +TK     D  + +ALI  Y +C AI  A+ +++ M+   LK   + N+++ G    G  
Sbjct: 263 LTKYGFHFDHSVCSALILFYCQCEAIDNAKAVYDSMERPCLK---ASNSLLEGLIFAGRI 319

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
            +A E+F  +R        +++  +L   A +G +E  ++ F+ M ++           +
Sbjct: 320 NDAEEIFCKLRE----KNPVSYNLMLKGYATSGRIEGSKRLFERMTHK-----TTSSLNT 370

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           ++ +  R+G ++ A  L + +  E D   W +++  C
Sbjct: 371 MISVYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGC 407



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 168/402 (41%), Gaps = 65/402 (16%)

Query: 27  VSWNVMISGYISSRGSGF-----------------LEEARYLFDIMPERDCV-TWNTVIS 68
           +SW  ++ G ++  G  F                 ++ A+ ++D M ER C+   N+++ 
Sbjct: 253 LSWGKVVHGILTKYGFHFDHSVCSALILFYCQCEAIDNAKAVYDSM-ERPCLKASNSLLE 311

Query: 69  GYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSAL 128
           G    G + +A  +F  +  +N VS+N M+ G+  +G +  +   F+RM  + ++SL+ +
Sbjct: 312 GLIFAGRINDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNTM 371

Query: 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
           +S   +NGE+D+A ++     S  D        +N++I G  Q  + E A KL+      
Sbjct: 372 ISVYSRNGEIDKAFKLFESVKSEGDP-----VTWNSMISGCIQNHQHEGALKLY------ 420

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
                              + MC      V  +R  F  + +  T      +   +HV  
Sbjct: 421 -------------------ITMCRT---SVERSRSTFSALFQACTCLEYIQLGQALHVHA 458

Query: 249 MEEA--SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           + EA  SN++V           +++  YA+ G++  A   F  +   N+ ++ ++I G  
Sbjct: 459 IREAFDSNVYVG---------TSLIDMYAKCGSIYDAQTSFASVCFPNVAAFTALINGYV 509

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDV 364
            +     A  +F +M      P+  T   ILS  S    +  GM +   + K   VIP +
Sbjct: 510 HHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEKCYGVIPTL 569

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
                ++ +  R G + EA      M +  + V W A++  C
Sbjct: 570 EHYACVVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLNAC 611


>gi|255538308|ref|XP_002510219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223550920|gb|EEF52406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1113

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 195/602 (32%), Positives = 293/602 (48%), Gaps = 64/602 (10%)

Query: 5    YVKRREMAKARKLFDEMPQRDVVSWNVMISGY-------------ISSRGSGFLEEARYL 51
            Y+K   ++ A   FD MP RDVVSWN +I GY             +     GF      L
Sbjct: 487  YMKLGRVSYAHNAFDYMPIRDVVSWNALICGYSRNGYDFSALELFVQMLKLGFCPRQTTL 546

Query: 52   FDIMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSMPA 88
              ++P                         D    N + S YAK G++E A  LF  M  
Sbjct: 547  VGLLPSCGQLELVFQGKSIHGFGIKSGLHLDPQVKNALTSMYAKCGDLEAAEYLFEEMMD 606

Query: 89   RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC 148
            ++VVSWN MI  + QNG    A+  F RM G         +  L       E+    + C
Sbjct: 607  KSVVSWNTMIGAYGQNGFFDEAMFVFKRMIGAGVEVSQVTIMSLPSANANPES----IHC 662

Query: 149  GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
             +   G  D      +LI  Y + G  + A  L+  +P            ++N+VS  ++
Sbjct: 663  YTIKVGLADDASVVTSLICMYARYGSTDHAELLYWSLP------------QKNLVSLTAI 710

Query: 209  IMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGY---IHVLDMEEASNLFVKMPH 261
            I  YA+AG++    E F QM    ++ D+ +  +++ G    +H+          +K   
Sbjct: 711  ITSYAEAGNLGLVMESFSQMHQLNMKPDSVAMLSILHGIADPVHICIGHVFHGYAIK-SG 769

Query: 262  PDT--LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
             DT  L  N ++S Y++  N+E     F  M +K L+SWNS+I+GC        AI+LF 
Sbjct: 770  LDTFNLVTNGLISMYSKFNNVEALFGLFSGMHEKPLISWNSVISGCVQAGRASHAIELFC 829

Query: 320  QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCG 378
            QM++ G  PD  T +S+LS  S +  L  G ++H  + +  +  +  +  ALI MY +CG
Sbjct: 830  QMKMHGCNPDAITIASLLSGCSQLGYLQFGERLHSYILRNKLEMEDFVGTALIHMYTKCG 889

Query: 379  AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
            +IV A  +F+ +     + +WNAMI G + +GF  +AL  +  M+   V P  ITF+ VL
Sbjct: 890  SIVHAERVFKSIGK-PCLATWNAMISGYSCYGFEHKALTCYSEMQEQGVEPDKITFLGVL 948

Query: 439  SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
            +AC H GL+ EGR++F+ M   Y + P ++H A +V ++ R G  E+A+  IK M  EPD
Sbjct: 949  AACTHGGLIHEGRRYFQIMTKVYDMVPTLQHCACMVGLLARVGLFEEALLFIKNMEKEPD 1008

Query: 499  KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558
             AVWGA L AC +H  V+L +  A+ L  ++  N   YVL+ N+YA  GRWDD   VR +
Sbjct: 1009 SAVWGAFLSACCIHQEVKLGEYLAKKLYLLDCRNGGLYVLMSNLYAVTGRWDDVARVREM 1068

Query: 559  MK 560
            MK
Sbjct: 1069 MK 1070



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 113/458 (24%), Positives = 197/458 (43%), Gaps = 68/458 (14%)

Query: 1    MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
            + S Y K  ++  A  LF+EM  + VVSWN MI  Y     +GF +EA ++F  M     
Sbjct: 584  LTSMYAKCGDLEAAEYLFEEMMDKSVVSWNTMIGAYGQ---NGFFDEAMFVFKRMIGAGV 640

Query: 56   ----------------PER------------DCVTWNTVISGYAKTGEMEEALRLFNSMP 87
                            PE             D     ++I  YA+ G  + A  L+ S+P
Sbjct: 641  EVSQVTIMSLPSANANPESIHCYTIKVGLADDASVVTSLICMYARYGSTDHAELLYWSLP 700

Query: 88   ARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEAAR 143
             +N+VS  A+I+ + + G++   +E F +M       DS ++ +++ G+     +     
Sbjct: 701  QKNLVSLTAIITSYAEAGNLGLVMESFSQMHQLNMKPDSVAMLSILHGIADPVHICIGH- 759

Query: 144  VLVKCGSRCDGGEDLVR-AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
              V  G     G D      N LI  Y +   VE    LF  +             ++ +
Sbjct: 760  --VFHGYAIKSGLDTFNLVTNGLISMYSKFNNVEALFGLFSGM------------HEKPL 805

Query: 203  VSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMIS-----GYIHVLDMEEAS 253
            +SWNS+I    +AG    A E+F QM       D  +  +++S     GY+   +   + 
Sbjct: 806  ISWNSVISGCVQAGRASHAIELFCQMKMHGCNPDAITIASLLSGCSQLGYLQFGERLHSY 865

Query: 254  NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
             L  K+   D +   A++  Y + G++  A   FK + +  L +WN+MI+G         
Sbjct: 866  ILRNKLEMEDFVG-TALIHMYTKCGSIVHAERVFKSIGKPCLATWNAMISGYSCYGFEHK 924

Query: 314  AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALI 371
            A+  + +MQ +G +PD+ TF  +L+  +    +H G +  Q++TK   ++P +     ++
Sbjct: 925  ALTCYSEMQEQGVEPDKITFLGVLAACTHGGLIHEGRRYFQIMTKVYDMVPTLQHCACMV 984

Query: 372  TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
             + AR G   EA +  + M+   +   W A +  C  H
Sbjct: 985  GLLARVGLFEEALLFIKNMEKEPDSAVWGAFLSACCIH 1022



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 166/380 (43%), Gaps = 40/380 (10%)

Query: 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
           G +  V     L+  Y + GRV  A   FD +P+            R++VSWN++I  Y+
Sbjct: 472 GIDQFVYVSTALLDLYMKLGRVSYAHNAFDYMPI------------RDVVSWNALICGYS 519

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIH-------VLDMEEASNLFVKMP-HPDTL 265
           + G   SA E+F QML+       T + G +        V   +      +K   H D  
Sbjct: 520 RNGYDFSALELFVQMLKLGFCPRQTTLVGLLPSCGQLELVFQGKSIHGFGIKSGLHLDPQ 579

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
             NA+ S YA+ G+LE A   F+ M  K++VSWN+MI     N  ++ A+ +F +M   G
Sbjct: 580 VKNALTSMYAKCGDLEAAEYLFEEMMDKSVVSWNTMIGAYGQNGFFDEAMFVFKRMIGAG 639

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARI 385
            +  + T  S+ S ++    +H        +   +  D  +  +LI MYAR G+   A +
Sbjct: 640 VEVSQVTIMSLPSANANPESIHC-----YTIKVGLADDASVVTSLICMYARYGSTDHAEL 694

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           ++  +   KN+VS  A+I   A  G     +E F  M    + P  +  +S+L   A   
Sbjct: 695 LYWSLP-QKNLVSLTAIITSYAEAGNLGLVMESFSQMHQLNMKPDSVAMLSILHGIADPV 753

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHF----ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
            +  G      + + Y I+  ++ F      L+ +  +   +E    L  GM  +P  + 
Sbjct: 754 HICIGH-----VFHGYAIKSGLDTFNLVTNGLISMYSKFNNVEALFGLFSGMHEKPLIS- 807

Query: 502 WGALLGAC----RVHNNVEL 517
           W +++  C    R  + +EL
Sbjct: 808 WNSVISGCVQAGRASHAIEL 827



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 125/279 (44%), Gaps = 44/279 (15%)

Query: 221 AREIFEQMLER--DTFSW--NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQ 276
           A +I   +++R  D F +    ++  Y+ +  +  A N F  MP  D ++WNA++ GY++
Sbjct: 461 AIQIQNHLIKRGIDQFVYVSTALLDLYMKLGRVSYAHNAFDYMPIRDVVSWNALICGYSR 520

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
            G      DF                           A++LF+QM   G  P + T   +
Sbjct: 521 NG-----YDF--------------------------SALELFVQMLKLGFCPRQTTLVGL 549

Query: 337 LSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           L     +  +  G  IH    K+ +  D  + NAL +MYA+CG +  A  +FEEM + K+
Sbjct: 550 LPSCGQLELVFQGKSIHGFGIKSGLHLDPQVKNALTSMYAKCGDLEAAEYLFEEM-MDKS 608

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           VVSWN MIG    +GF  EA+ +FK M    V  + +T +S+ SA A+        +   
Sbjct: 609 VVSWNTMIGAYGQNGFFDEAMFVFKRMIGAGVEVSQVTIMSLPSANANP-------ESIH 661

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
               + G+        SL+ +  R+G  + A  L   +P
Sbjct: 662 CYTIKVGLADDASVVTSLICMYARYGSTDHAELLYWSLP 700


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 180/558 (32%), Positives = 302/558 (54%), Gaps = 56/558 (10%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L  A  +F+ + E + + WNT+  G+A + +   AL+L+  M +  ++  +      L++
Sbjct: 84  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 143

Query: 105 GDVANAIEFFDRMPGR--------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
              + A +   ++ G         D    ++L+S  +QNG L++A +V  +   R     
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHR----- 198

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D+V +Y  LI GY  RG +E A+KLFD+IPV            +++VSWN+MI  YA+ G
Sbjct: 199 DVV-SYTALIKGYASRGYIESAQKLFDEIPV------------KDVVSWNAMISGYAETG 245

Query: 217 DVVSAREIFEQMLER----DTFSWNTMISG-----------YIH--VLDMEEASNLFVKM 259
           +   A E+F++M++     D  +  T++S             +H  + D    SNL +  
Sbjct: 246 NYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIV- 304

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
                   N+++  Y++ G LE A   F+ +  K+++SWN++I G      Y+ A+ LF 
Sbjct: 305 --------NSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQ 356

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK---TVIPDVPINNALITMYAR 376
           +M   GE+P+  T  SIL   + +  + +G  IH  + K   +      +  +LI MYA+
Sbjct: 357 EMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAK 416

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG I  A  +F  + L K++ SWNAMI G A HG A  A ++F  MR   + P  ITF+ 
Sbjct: 417 CGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVG 475

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           +LSAC+ +G+++ GR  F++M  +Y I P++EH+  ++D++G  G  ++A ++I  M  E
Sbjct: 476 LLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEME 535

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
           PD  +W +LL AC++  NVEL +  A+ L+K+EPEN   YVLL N+YA  GRW++  ++R
Sbjct: 536 PDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIR 595

Query: 557 LLMKSNNIKKPTGYSWVD 574
            L+    +KK  G S ++
Sbjct: 596 ALLNDKGMKKVPGCSSIE 613



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 192/429 (44%), Gaps = 87/429 (20%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+     +IS Y+ +   G LE+AR +FD  P RD V++  +I GYA  G +E A +LF+
Sbjct: 168 DLFVHTSLISVYVQN---GRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFD 224

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            +P ++VVSWNAMISG+ + G+   A+E F  M              +  N   DE+  V
Sbjct: 225 EIPVKDVVSWNAMISGYAETGNYKEALELFKEM--------------MKTNIRPDESTMV 270

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
                              T++    Q G +E  R++   I    D G     F  N+  
Sbjct: 271 -------------------TVVSACAQSGSIELGRQVHSWID---DHG-----FGSNLKI 303

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----P 260
            NS++  Y+K G++ +A  +FE +L +D  SWNT+I GY H+   +EA  LF +M     
Sbjct: 304 VNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 363

Query: 261 HPDTLT------------------W-------------------NAMVSGYAQIGNLELA 283
            P+ +T                  W                    +++  YA+ G++E A
Sbjct: 364 RPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAA 423

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F  +  K+L SWN+MI G   +   + A  +F +M+  G +PD  TF  +LS  S  
Sbjct: 424 HQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRS 483

Query: 344 VDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
             L LG  I + +T+   + P +     +I +    G   EA  +   M++  + V W +
Sbjct: 484 GMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCS 543

Query: 402 MIGGCASHG 410
           ++  C   G
Sbjct: 544 LLKACKIRG 552



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 196/425 (46%), Gaps = 60/425 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +IS YV+   +  ARK+FD  P RDVVS+  +I GY S    G++E A+ LFD +P +D 
Sbjct: 175 LISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYAS---RGYIESAQKLFDEIPVKDV 231

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNV----VSWNAMISGFLQNGDVANAIEFF-- 114
           V+WN +ISGYA+TG  +EAL LF  M   N+     +   ++S   Q+G +    +    
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSW 291

Query: 115 --DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
             D   G +   +++L+    + GEL+ A      CG         V ++NTLI GY   
Sbjct: 292 IDDHGFGSNLKIVNSLMDLYSKCGELETA------CGLFEGLLYKDVISWNTLIGGYTHM 345

Query: 173 GRVEEARKLFDKIPVNCDRGE--------------GNVRFKRNIVSW------------- 205
              +EA  LF ++  + +R                G +   R I  +             
Sbjct: 346 NLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASS 405

Query: 206 --NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP--- 260
              S+I  YAK GD+ +A ++F  +L +   SWN MI G+      + A ++F +M    
Sbjct: 406 LRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIG 465

Query: 261 -HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-----NLVSWNSMIAGCETNKDYEGA 314
             PD +T+  ++S  ++ G L+L    F+ M Q       L  +  MI     +  ++ A
Sbjct: 466 IEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEA 525

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALIT-M 373
            ++   M++E   PD   + S+L       ++ LG    Q + K + P+ P    L++ +
Sbjct: 526 EEMINNMEME---PDGVIWCSLLKACKIRGNVELGESFAQNLIK-IEPENPGCYVLLSNI 581

Query: 374 YARCG 378
           YA  G
Sbjct: 582 YATAG 586



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 165/350 (47%), Gaps = 29/350 (8%)

Query: 220 SAREIFEQMLERDTFSWNTMISGYI-------HVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           S R I  QM++    + N  +S  +       H   +  A ++F  +  P+ L WN M  
Sbjct: 48  SLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFR 107

Query: 273 GYAQIGNLELALDFFKRMPQKNLV----SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           G+A   +   AL  +  M    L+    ++  ++  C  +K ++   ++   +   G   
Sbjct: 108 GHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDL 167

Query: 329 DRHTFSSILS--MSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARII 386
           D    +S++S  + +G ++        ++  ++   DV    ALI  YA  G I  A+ +
Sbjct: 168 DLFVHTSLISVYVQNGRLE-----DARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKL 222

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+E+  +K+VVSWNAMI G A  G   EALELFK M    + P   T ++V+SACA +G 
Sbjct: 223 FDEIP-VKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGS 281

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +E GRQ   S ++++G    ++   SL+D+  + G LE A  L +G+ ++ D   W  L+
Sbjct: 282 IELGRQ-VHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYK-DVISWNTLI 339

Query: 507 GACRVHNNV--ELAQVAAEALMKVEPENSTPYVLLYNMYA-----DVGRW 549
           G    H N+  E   +  E L   E  N    + +    A     D+GRW
Sbjct: 340 GG-YTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRW 388


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 189/623 (30%), Positives = 314/623 (50%), Gaps = 72/623 (11%)

Query: 5   YVKRREMAKARKLFDEMPQR-DVVSWNVMISGYISSRGSGFLEEARYLFDIMPE------ 57
           YVK  +M  AR++FD MP + +V  WN+++ GY  ++ + F EE+  LF+ M E      
Sbjct: 353 YVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGY--AKAAEF-EESLLLFEQMHELGITPD 409

Query: 58  -----------------RD----------------CVTWNTVISGYAKTGEMEEALRLFN 84
                            RD                C   N +IS YAK+  ++ A+ +F+
Sbjct: 410 EHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFD 469

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            MP ++ +SWN++ISG   NG  + AIE F RM               +Q  ELD    +
Sbjct: 470 RMPHQDTISWNSVISGCTSNGLNSEAIELFVRM--------------WMQGHELDSTTLL 515

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK----R 200
            V           + R  +   V  G  G    A  L D      D    N  F+    +
Sbjct: 516 SVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQK 575

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLF 256
           N+VSW +MI  Y +AG       + ++M    ++ D F+  +++ G+     +++  ++ 
Sbjct: 576 NVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVH 635

Query: 257 ---VKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
              ++      L   NA++  Y    N+E A   F  +  K+++SWN++I G   N    
Sbjct: 636 GYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFAN 695

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALI 371
            +  LF  M ++  KP+  T + IL   + I  L  G +IH   + +  + D   +NAL+
Sbjct: 696 ESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALV 754

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            MY +CGA++ AR++F+ +   KN++SW  MI G   HG   +A+ LF+ MR   V P  
Sbjct: 755 DMYVKCGALLVARVLFDRLTK-KNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDT 813

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
            +F ++L AC H+GL  EG + F +M  EY IEP+++H+  +VD++   G L++A + I+
Sbjct: 814 ASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIE 873

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
            MP EPD ++W +LL  CR+H +V+LA+  A+ + K+EPEN+  YVLL N+YA+  RW+ 
Sbjct: 874 SMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEA 933

Query: 552 ANEVRLLMKSNNIKKPTGYSWVD 574
             +++  +    +++ TG SW++
Sbjct: 934 VKKLKNKIGGRGLRENTGCSWIE 956



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 173/694 (24%), Positives = 283/694 (40%), Gaps = 191/694 (27%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR--DVVSWNVMISGY---------------------- 36
           ++  Y+K  ++  AR +FDEMP R  DV  W  ++S Y                      
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVS 195

Query: 37  ------------ISSRGSGFLEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEAL 80
                       I+S GS  + E   +  ++ +      C   N +I+ Y++ G ME+A+
Sbjct: 196 PDAHAVSCVLKCIASLGS--ITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAM 253

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRDSASLSALV--------- 129
           ++F+SM AR+ +SWN+ ISG+  NG    A++ F +M   G + +S++ L          
Sbjct: 254 QVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELG 313

Query: 130 --------------SGL------IQNGELDEA-----ARVLVKCGSRCDG--------GE 156
                         SGL      +Q+G +DEA       + VKCG              +
Sbjct: 314 FELVGKVVHGYSMKSGLLWDLESVQSG-IDEALGSKLVFMYVKCGDMGSARRVFDAMPSK 372

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIP--------------------VNCDR----G 192
             V  +N ++ GY +    EE+  LF+++                     ++C R     
Sbjct: 373 GNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVA 432

Query: 193 EG---NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
            G    + F       N++I  YAK+  + +A  +F++M  +DT SWN++ISG       
Sbjct: 433 HGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLN 492

Query: 250 EEASNLFVKM----PHPDTLT-------------W----------------------NAM 270
            EA  LFV+M       D+ T             W                      NA+
Sbjct: 493 SEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANAL 552

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
           +  Y+   +       F+ M QKN+VSW +MI        ++    L  +M ++G KPD 
Sbjct: 553 LDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDV 612

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEE 389
              +S+L   +G   L  G  +H    +  +   +P+ NAL+ MY  C  + EAR++F+ 
Sbjct: 613 FAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDH 672

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           +   K+++SWN +IGG + + FA E+  LF  M   +  P  +T   +L A A    +E 
Sbjct: 673 VT-NKDIISWNTLIGGYSRNNFANESFSLFSDML-LQFKPNTVTMTCILPAVASISSLER 730

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDI-------------------------------VG 478
           GR+     +    +E      A LVD+                                G
Sbjct: 731 GREIHAYALRRGFLEDSYTSNA-LVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYG 789

Query: 479 RHGRLEDAMDL---IKGMPFEPDKAVWGALLGAC 509
            HG  +DA+ L   ++G   EPD A + A+L AC
Sbjct: 790 MHGCGKDAVALFEQMRGSGVEPDTASFSAILYAC 823



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 121/473 (25%), Positives = 202/473 (42%), Gaps = 93/473 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           +IS Y K   +  A  +FD MP +D +SWN +ISG  S   +G   EA  LF  M     
Sbjct: 451 LISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTS---NGLNSEAIELFVRMWMQGH 507

Query: 57  ERDCVT-------------W--NTVISGYA-KTGEMEEAL-------------------R 81
           E D  T             W    V+ GY+ KTG + E                     +
Sbjct: 508 ELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQ 567

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG-----------RDSASLSALVS 130
           +F +M  +NVVSW AMI+ + + G        FD++ G            D  ++++++ 
Sbjct: 568 IFRNMAQKNVVSWTAMITSYTRAG-------LFDKVAGLLQEMVLDGIKPDVFAVTSVLH 620

Query: 131 GLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV 187
           G   +  L +   V    ++     +G E L+   N L+  Y     +EEAR +FD +  
Sbjct: 621 GFAGDESLKQGKSVHGYAIR-----NGMEKLLPVANALMEMYVNCRNMEEARLVFDHVT- 674

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML---ERDTFSWNTMISGYI 244
                       ++I+SWN++I  Y++      +  +F  ML   + +T +   ++    
Sbjct: 675 -----------NKDIISWNTLIGGYSRNNFANESFSLFSDMLLQFKPNTVTMTCILPAVA 723

Query: 245 HVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
            +  +E    +           D+ T NA+V  Y + G L +A   F R+ +KNL+SW  
Sbjct: 724 SISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTI 783

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL--SMSSGIVDLHLGMQIHQMVTK 358
           MIAG   +   + A+ LF QM+  G +PD  +FS+IL     SG+     G +    + K
Sbjct: 784 MIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTA--EGWKFFNAMRK 841

Query: 359 --TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
              + P +     ++ + +  G + EA    E M +  +   W +++ GC  H
Sbjct: 842 EYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIH 894



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 191/445 (42%), Gaps = 78/445 (17%)

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
           S+ ++  +  L Q G+L  A R+L   GS  DGG   VR+Y  ++   G+   +E AR+ 
Sbjct: 63  SSDVNLRIQRLCQAGDLAAALRLL---GS--DGGVG-VRSYCAVVQLCGEERSLEAARRA 116

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER--DTFSWNTM 239
              +        G+V  KR       +++ Y K GD+  AR +F++M  R  D   W ++
Sbjct: 117 HALVRAGTGGIIGSVLGKR-------LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSL 169

Query: 240 ISGYIHVLDMEEASNLFVKMP----HPDT------------------------------- 264
           +S Y    D +E  +LF +M      PD                                
Sbjct: 170 MSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGL 229

Query: 265 ----LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
                  NA+++ Y++ G +E A+  F  M  ++ +SWNS I+G  +N  ++ A+ LF +
Sbjct: 230 GEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSK 289

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI----------PDVPINNAL 370
           M  EG +    T  S+L   + +    +G  +H    K+ +           D  + + L
Sbjct: 290 MWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKL 349

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP- 429
           + MY +CG +  AR +F+ M    NV  WN ++GG A      E+L LF+ M    + P 
Sbjct: 350 VFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPD 409

Query: 430 -----TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
                  +  I+ LS CA  GLV  G       + + G   +     +L+    +   ++
Sbjct: 410 EHALSCLLKCITCLS-CARDGLVAHG------YLVKLGFGTQCAVCNALISFYAKSNMID 462

Query: 485 DAMDLIKGMPFEPDKAVWGALLGAC 509
           +A+ +   MP + D   W +++  C
Sbjct: 463 NAVLVFDRMPHQ-DTISWNSVISGC 486



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 86/195 (44%), Gaps = 16/195 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  YVK   +  AR LFD + +++++SW +MI+GY    G G  ++A  LF+ M     
Sbjct: 753 LVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGY-GMHGCG--KDAVALFEQMRGSGV 809

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
           E D  +++ ++     +G   E  + FN+M         +  +  ++      G++  A 
Sbjct: 810 EPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAF 869

Query: 112 EFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG-YG 170
           EF + MP    +S+      L+    +    ++  K   R    E     Y  L+   Y 
Sbjct: 870 EFIESMPIEPDSSIWV---SLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYA 926

Query: 171 QRGRVEEARKLFDKI 185
           +  R E  +KL +KI
Sbjct: 927 EAERWEAVKKLKNKI 941


>gi|302772074|ref|XP_002969455.1| hypothetical protein SELMODRAFT_91325 [Selaginella moellendorffii]
 gi|300162931|gb|EFJ29543.1| hypothetical protein SELMODRAFT_91325 [Selaginella moellendorffii]
          Length = 578

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 173/552 (31%), Positives = 295/552 (53%), Gaps = 38/552 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y +   +A+A+ +FD + Q  + SWN++ + Y  +   G L+ A  LFD+MP RD 
Sbjct: 60  LIDKYGRFGCVAEAKLVFDAIAQPGIHSWNIITAAYARN---GHLDHAARLFDVMPRRDV 116

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+W +++SG+++     EA+R+F SMP  +VV+ N  I+ + Q+G + +A+E F RM  R
Sbjct: 117 VSWTSLLSGFSQYNCPGEAIRVFLSMPQWDVVACNPAIAAYAQSGHIFDAVEIFARMSYR 176

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D AS +A+++   ++ ++       V   S      D + + NT++      G +E A+ 
Sbjct: 177 DIASWNAILAAYSESSQVFN-----VNAFSALMPMWDAI-STNTVLTANATAGYLERAKC 230

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +FD+             F+ + V+WN+MI  Y   GD+ + + IF+ M  R + SW+TMI
Sbjct: 231 IFDR-----------SSFRDDTVAWNAMIWAYVSNGDLQTGKAIFDSMPRRGSSSWDTMI 279

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           + +    ++  AS   VK+P    L+W ++++G+AQ   L+ A+  F  M Q+N VSWN+
Sbjct: 280 AAFAQGGEISLASETLVKIPRSSVLSWTSLLAGHAQAAELDKAMAVFHAMKQRNDVSWNA 339

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           ++A      + E A  +F +M   G          I S ++ +V L     +     K  
Sbjct: 340 VLAAYAQAGEIEDARAIFAKMPQLG----------IASWAAIVVALVRNRDLAS--AKAA 387

Query: 361 IPDVPIN-----NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
              +P +     N L+  YA  G + +A  +F  M + KN  SW A++  CA +    +A
Sbjct: 388 FDGMPEHDVFAWNCLLRAYASNGFVADALDLFSRMTV-KNPASWAAVLASCAYNNMGRDA 446

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           + LF+ M      P    F +VL+ C HAG++EEGR++F ++   YG+ P +EH++ +V+
Sbjct: 447 VRLFRLMVLDGHRPDGTAFSAVLTGCGHAGMLEEGRRYFWAISESYGVTPAVEHYSCVVN 506

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++GR  RL DA +L+  MP  P  + W  LLG   +  +V  A+ AAE + ++ P   +P
Sbjct: 507 LLGRSRRLADAEELVDSMPLCPHVSTWSVLLGVAGISGDVRRAERAAEEIARLSPCAHSP 566

Query: 536 YVLLYNMYADVG 547
           YVLL N+ +  G
Sbjct: 567 YVLLSNVLSSDG 578



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 185/445 (41%), Gaps = 91/445 (20%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           N+V+ N +I  Y + G V  A+ +F+ + +    SWN + + Y     ++ A+ LF  MP
Sbjct: 54  NLVA-NLLIDKYGRFGCVAEAKLVFDAIAQPGIHSWNIITAAYARNGHLDHAARLFDVMP 112

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             D ++W +++SG++Q      A+  F  MPQ ++V+ N  IA    +     A+++F +
Sbjct: 113 RRDVVSWTSLLSGFSQYNCPGEAIRVFLSMPQWDVVACNPAIAAYAQSGHIFDAVEIFAR 172

Query: 321 MQVEGEKPDRHTFSSIL---SMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARC 377
           M       D  ++++IL   S SS + +++    +  M       D    N ++T  A  
Sbjct: 173 MSYR----DIASWNAILAAYSESSQVFNVNAFSALMPMW------DAISTNTVLTANATA 222

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG--------------------------- 410
           G +  A+ IF+      + V+WNAMI    S+G                           
Sbjct: 223 GYLERAKCIFDRSSFRDDTVAWNAMIWAYVSNGDLQTGKAIFDSMPRRGSSSWDTMIAAF 282

Query: 411 -------FATEAL----------------------ELFKSMRSFKVLPTY--ITFISVLS 439
                   A+E L                      EL K+M  F  +     +++ +VL+
Sbjct: 283 AQGGEISLASETLVKIPRSSVLSWTSLLAGHAQAAELDKAMAVFHAMKQRNDVSWNAVLA 342

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
           A A AG +E+ R  F  M  + GI      +A++V  + R+  L  A     GMP E D 
Sbjct: 343 AYAQAGEIEDARAIFAKM-PQLGIAS----WAAIVVALVRNRDLASAKAAFDGMP-EHDV 396

Query: 500 AVWGALLGACRVHNNVELAQVAAEAL-----MKVEPENSTPYVLLYNMYADVGRWDDANE 554
             W  LL A   +  V      A+AL     M V+   S   VL    Y ++GR D    
Sbjct: 397 FAWNCLLRAYASNGFV------ADALDLFSRMTVKNPASWAAVLASCAYNNMGR-DAVRL 449

Query: 555 VRLLMKSNNIKKPTGYSWVDFSPCG 579
            RL++   +    T +S V  + CG
Sbjct: 450 FRLMVLDGHRPDGTAFSAV-LTGCG 473


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 187/531 (35%), Positives = 292/531 (54%), Gaps = 31/531 (5%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG-DVANAIEFFD 115
           E D    NT++S Y   G + +A R+F+ MP +++VSWN MI  F  NG    +A++ F 
Sbjct: 73  ESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFR 132

Query: 116 RMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
            M       +S ++S+ +  L++  E  +A R +     R     D+  A N+LI  Y +
Sbjct: 133 LMIDEGLKPNSITISSFLPVLVEL-EFFKAGREVHGSSIRMGLESDIFIA-NSLIDMYAK 190

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G   EA  +F K+              +N+VSWN+MI  +A+    + A  +  QM + 
Sbjct: 191 SGHSTEASNVFYKLDA------------KNVVSWNAMIANFAQNRFELVAVGLVRQMQDY 238

Query: 232 ----DTFSWNTMISGYIHVLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELA 283
               ++ ++  ++     +  +     +  +  H     D    NA+   YA+ G+L+LA
Sbjct: 239 GELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLA 298

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
            + F     ++ VS+N +I G     D   ++ LF +MQ+ G K D  +F   LS  + +
Sbjct: 299 RNVFD-TSLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANL 357

Query: 344 VDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             +  G +IH  + + +    + + N+L+  Y +CG I  AR IF+ M   K+V SWN M
Sbjct: 358 TAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTN-KDVASWNTM 416

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I G    G    A++LF++MR   V    ++FI+VLSAC+H GL+E+GR++F  +    G
Sbjct: 417 ILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDEL-KARG 475

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           IEP   H+A +VD++GR G +E+A +LIKG+P  PD  +WGALLGACR++ N+ELA  AA
Sbjct: 476 IEPTQMHYACMVDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAA 535

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           E L +++PE+S  Y LL NMYA+ GRWD+AN +R LMKS  +KK  G SWV
Sbjct: 536 EHLFELKPEHSGYYTLLSNMYAETGRWDEANRIRELMKSRGVKKSPGCSWV 586



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 122/502 (24%), Positives = 221/502 (44%), Gaps = 93/502 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGF---LEEARYLFD---- 53
           ++S Y     +  A ++FDEMP++D+VSWN MI G  S  G  +   L+  R + D    
Sbjct: 82  LLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMI-GVFSVNGWHYRDALDMFRLMIDEGLK 140

Query: 54  --------IMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRL 82
                    +P                       E D    N++I  YAK+G   EA  +
Sbjct: 141 PNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNV 200

Query: 83  FNSMPARNVVSWNAMISGFLQN----------------GDVANAIEFFDRMPGRDSASLS 126
           F  + A+NVVSWNAMI+ F QN                G++ N++ F + +P       +
Sbjct: 201 FYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLP-------A 253

Query: 127 ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
               GL++ G+   A  + + C        DL  + N L   Y + G ++ AR +FD   
Sbjct: 254 CARMGLVRPGKEIHARSIHMGCAF------DLFVS-NALTDMYAKSGHLKLARNVFDTS- 305

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG 242
                        R+ VS+N +I+ +++  D   +  +F +M    L++D  S+   +S 
Sbjct: 306 ------------LRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSA 353

Query: 243 YIHVLDMEEASN----LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
             ++  +++       L  K+ H      N+++  Y + G + LA + F RM  K++ SW
Sbjct: 354 CANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASW 413

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ-IHQMVT 357
           N+MI G     + + AI LF  M+ +  + D  +F ++LS  S    L  G +   ++  
Sbjct: 414 NTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKA 473

Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
           + + P       ++ +  R G + EA  + + + ++ +   W A++G C  +G     L 
Sbjct: 474 RGIEPTQMHYACMVDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYG--NLELA 531

Query: 418 LFKSMRSFKVLPTYITFISVLS 439
            + +   F++ P +  + ++LS
Sbjct: 532 AWAAEHLFELKPEHSGYYTLLS 553



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 211/433 (48%), Gaps = 45/433 (10%)

Query: 94  WNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVSGLIQNGELDEAARV--- 144
           WN +I G+   G V   +E +++M      P  D  +   ++       E+ +   V   
Sbjct: 10  WNTLIRGYSIAG-VGGGLEVYNQMVRIGVRP--DDHTFPFVLKACADAFEVRKGREVHGS 66

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
           +VK G   D     V   NTL+  YG  G + +A ++FD++P            ++++VS
Sbjct: 67  VVKLGFESD-----VFVGNTLLSFYGNCGGLRDAGRVFDEMP------------EKDLVS 109

Query: 205 WNSMIMCYAKAG-DVVSAREIFEQMLERDTFSWNTMISGYIHVL-DME------EASNLF 256
           WN+MI  ++  G     A ++F  M++      +  IS ++ VL ++E      E     
Sbjct: 110 WNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSS 169

Query: 257 VKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           ++M    D    N+++  YA+ G+   A + F ++  KN+VSWN+MIA    N+    A+
Sbjct: 170 IRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAV 229

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMY 374
            L  QMQ  GE P+  TF+++L   + +  +  G +IH + +      D+ ++NAL  MY
Sbjct: 230 GLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMY 289

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           A+ G +  AR +F+    L++ VS+N +I G +     +E+L LF  M+   +    ++F
Sbjct: 290 AKSGHLKLARNVFDTS--LRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSF 347

Query: 435 ISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           +  LSACA+   +++G++ H   +   + I   + +  SL+D   + GR+  A ++   M
Sbjct: 348 MGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVAN--SLLDFYTKCGRIGLARNIFDRM 405

Query: 494 PFEPDKAVWGALL 506
               D A W  ++
Sbjct: 406 T-NKDVASWNTMI 417



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 7/226 (3%)

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WN++I G        G ++++ QM   G +PD HTF  +L   +   ++  G ++H  V 
Sbjct: 10  WNTLIRGYSI-AGVGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68

Query: 358 KTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA-TEA 415
           K     DV + N L++ Y  CG + +A  +F+EM   K++VSWN MIG  + +G+   +A
Sbjct: 69  KLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMP-EKDLVSWNTMIGVFSVNGWHYRDA 127

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L++F+ M    + P  IT  S L         + GR+   S +   G+E  I    SL+D
Sbjct: 128 LDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSI-RMGLESDIFIANSLID 186

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
           +  + G   +A ++   +    +   W A++ A    N  EL  V 
Sbjct: 187 MYAKSGHSTEASNVFYKLD-AKNVVSWNAMI-ANFAQNRFELVAVG 230



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 23/194 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y K   +  AR +FD M  +DV SWN MI GY      G L+ A  LF+ M     
Sbjct: 385 LLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGY---GMLGELDTAIDLFENMRKDDV 441

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNV----VSWNAMISGFLQNGDVANAIE 112
           E D V++  V+S  +  G +E+  + F+ + AR +    + +  M+    + G +  A E
Sbjct: 442 EYDSVSFIAVLSACSHGGLLEKGRKYFDELKARGIEPTQMHYACMVDLLGRAGLMEEAAE 501

Query: 113 FFDRMPGRDSASL-SALVSGLIQNGELDE---AARVLVKCGSRCDGGEDLVRAYNTLIVG 168
               +P    A++  AL+      G L+    AA  L +      G       Y TL+  
Sbjct: 502 LIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELKPEHSG-------YYTLLSN 554

Query: 169 -YGQRGRVEEARKL 181
            Y + GR +EA ++
Sbjct: 555 MYAETGRWDEANRI 568


>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 178/540 (32%), Positives = 295/540 (54%), Gaps = 22/540 (4%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNV----VSWNAMISG 100
           L +A ++F+ +     + WN +I G +K+    +A+  +N+M  + +    +++  +   
Sbjct: 22  LPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKS 81

Query: 101 FLQNGDV--ANAIEFFDRMPGRDSASL--SALVSGLIQNGELDEAARVLVKCGSRCDGG- 155
             +  DV     +       G +S S   +AL+   +  GEL  A +V        DG  
Sbjct: 82  CARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVF-------DGML 134

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
           E  V ++N++I GY Q  R ++   LF ++     R + +V   + I +  +  +   + 
Sbjct: 135 ERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRAD-SVTMMKAISA--TCFLSEWEM 191

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
           GD +  + I E  +  D +  NT+I  Y     ++ A  +F +M   + ++WNAM+ GYA
Sbjct: 192 GDYL-VKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYA 250

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           ++GNL  A   F  MP ++++SW SMI G    K +  A+KLF +M V   KPD  T ++
Sbjct: 251 KVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVAT 310

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
            LS  + +  L  G  +H  + K  I  DV + N+LI MY +CG + +A  +F +MK  +
Sbjct: 311 ALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKT-R 369

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           + VSW ++I G A +GFA  AL +F  M    + PT+ TF+ VL ACAH GLV++G +HF
Sbjct: 370 DSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHF 429

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           KSM N Y + P ++H+  +VD++ R G L+ A + IK MP  PD  +W  LL AC++H N
Sbjct: 430 KSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGN 489

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + LA++ ++ L+ ++P N+  YVL  + YA   RWDD  ++R LM+  N++KP  YS ++
Sbjct: 490 LVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIE 549



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 184/422 (43%), Gaps = 85/422 (20%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +I  Y+     G L  A+ +FD M ERD V+WN++I GY +    ++ L LF  M A 
Sbjct: 111 NALIHMYVCF---GELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAI 167

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
           NV +                           DS ++   +S      E  E    LVK  
Sbjct: 168 NVRA---------------------------DSVTMMKAISATCFLSEW-EMGDYLVKYI 199

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
                  DL    NTLI  YG+RG ++ A ++F ++             ++NIVSWN+MI
Sbjct: 200 DEHGVVVDLYLG-NTLIDMYGRRGMIDFAGRVFYQMK------------EKNIVSWNAMI 246

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF----VKMPHPDTL 265
           M YAK G++V+A+++F +M  RD  SW +MI GY       EA  LF    V M  PD +
Sbjct: 247 MGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEI 306

Query: 266 T-----------------------------------WNAMVSGYAQIGNLELALDFFKRM 290
           T                                    N+++  Y + G +E AL  F  M
Sbjct: 307 TVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDM 366

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
             ++ VSW S+I+G   N   E A+ +F QM  EG  P   TF  +L   + +  +  G+
Sbjct: 367 KTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGV 426

Query: 351 QIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           +  + +  T  + P++     ++ +  R G +  A    ++M ++ +VV W  ++  C  
Sbjct: 427 EHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKL 486

Query: 409 HG 410
           HG
Sbjct: 487 HG 488



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 170/392 (43%), Gaps = 101/392 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------ISSR-- 40
           +I  YV   E+A A+K+FD M +RDVVSWN +I GY                  I+ R  
Sbjct: 113 LIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRAD 172

Query: 41  ---------GSGFLEE---ARYLFDIMPER----DCVTWNTVISGYAKTGEMEEALRLFN 84
                     + FL E     YL   + E     D    NT+I  Y + G ++ A R+F 
Sbjct: 173 SVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFY 232

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            M  +N+VSWNAMI G+ + G++  A + F+ MP RD  S ++++ G     +  EA ++
Sbjct: 233 QMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKL 292

Query: 145 -------------------LVKCG--SRCDGGE---DLVRAY---------NTLIVGYGQ 171
                              L  C      D GE   D +R +         N+LI  Y +
Sbjct: 293 FQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCK 352

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE- 230
            G VE+A ++F+ +              R+ VSW S+I   A  G   SA  +F+QML+ 
Sbjct: 353 CGVVEKALQVFNDMKT------------RDSVSWTSIISGLAVNGFAESALNVFDQMLKE 400

Query: 231 -----RDTFSWNTMISGYIHVLD--------MEEASNLFVKMPHPDTLTWNAMVSGYAQI 277
                  TF    +   ++ ++D        ME    L  +M H     +  +V    + 
Sbjct: 401 GICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKH-----YGCVVDLLCRS 455

Query: 278 GNLELALDFFKRMP-QKNLVSWNSMIAGCETN 308
           G L++A +F K+MP   ++V W  +++ C+ +
Sbjct: 456 GYLDMAYNFIKKMPIVPDVVIWRILLSACKLH 487


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 193/618 (31%), Positives = 310/618 (50%), Gaps = 65/618 (10%)

Query: 6   VKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV---- 61
           VK   +A A  LFD MP+++VV+W  ++SGY     +G  E A  +F  M E        
Sbjct: 59  VKSGRLADALDLFDRMPRKNVVAWTSVMSGYTR---NGRPEAALAMFADMVESGVAPNDF 115

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL-----QNGDVANAIEFFDR 116
             N  +   A  G +    ++ +S+  R   + +A I   L     + G +  A E FDR
Sbjct: 116 ACNAALVACADLGALRAGEQV-HSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDR 174

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVK-----------------------CGSRCD 153
           M   D    ++L+S   +NGE + AA  L++                        G +  
Sbjct: 175 MDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIH 234

Query: 154 G--------GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
           G            V +   LI  Y + G  + A+ +FD +  +C          +N+VSW
Sbjct: 235 GYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSL--HC----------KNVVSW 282

Query: 206 NSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMIS--GYIHVLDMEEASNLFVKM 259
            SM+  Y + G +  A ++F  M+    + + F+ + ++   G I +      S +   +
Sbjct: 283 CSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDL 342

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
              D    NA++S Y + G +E       ++   +LVSW + I+    N   E AI L  
Sbjct: 343 I-TDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLC 401

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCG 378
           QM  EG  P+ + FSS+LS  + +  L  GMQ H +  K     ++   NALI MY++CG
Sbjct: 402 QMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCG 461

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
            +  AR+ F+ M    +V SWN++I G A HG A +ALE+F  MRS  + P   TF+ VL
Sbjct: 462 QMGSARLAFDVMH-THDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVL 520

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
             C H+G+VEEG   F+ M+++Y   P   H+A ++D++GR+GR ++A+ +I  MPFEPD
Sbjct: 521 MGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPD 580

Query: 499 KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558
             +W  LL +C++H N+++ ++AA+ LM++   +S  YVL+ N+YA  G W+DA +VR  
Sbjct: 581 ALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRR 640

Query: 559 MKSNNIKKPTGYSWVDFS 576
           M    +KK  G SW++ +
Sbjct: 641 MDETGVKKDAGCSWIEIN 658



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 192/469 (40%), Gaps = 89/469 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           +I  Y +   +  A+++FD M   DVV +  +IS +   R   F   A  L  ++ +   
Sbjct: 155 LIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFC--RNGEFELAAEALIQMLKQGLK 212

Query: 58  ---------------------------------RDCVTWNTVISGYAKTGEMEEALRLFN 84
                                            +   +   +I  Y++ GE + A  +F+
Sbjct: 213 PNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFD 272

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
           S+  +NVVSW +M+  ++++G +  A++ F  M           +S  +   E    + V
Sbjct: 273 SLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDM-----------ISEGVDPNEF-ALSIV 320

Query: 145 LVKCGS-------RCDG-GEDL---VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
           L  CGS        C     DL   +R  N L+  YG+ G VEE   + +KI        
Sbjct: 321 LGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIE------- 373

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDM 249
                  ++VSW + I    + G    A  +  QM       + +++++++S    V  +
Sbjct: 374 -----NPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASL 428

Query: 250 EEASN---LFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
           ++      L +K+    +  T NA+++ Y++ G +  A   F  M   ++ SWNS+I G 
Sbjct: 429 DQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGH 488

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL--SMSSGIV---DLHLGMQIHQMVTKTV 360
             + D   A+++F +M+  G KPD  TF  +L     SG+V   +L   + I Q    + 
Sbjct: 489 AQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQY---SF 545

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            P       +I M  R G   EA  +  +M    + + W  ++  C  H
Sbjct: 546 TPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLH 594



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 149/347 (42%), Gaps = 46/347 (13%)

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           PD +     ++   + G L  ALD F RMP+KN+V+W S+++G   N   E A+ +F  M
Sbjct: 46  PDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADM 105

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAI 380
              G  P+    ++ L   + +  L  G Q+H +  +     D  I + LI MY+RCG++
Sbjct: 106 VESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSL 165

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
             A+ +F+ M    +VV + ++I     +G    A E    M    + P   T  ++L+A
Sbjct: 166 PAAKEVFDRMD-SPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTA 224

Query: 441 CA-------HAGLVEE------------GRQHFKSMVNEYGIE---------PRIEHFAS 472
           C        H  L+++                F S   E+ +            +  + S
Sbjct: 225 CPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCS 284

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFE---PDKAVWGALLGAC---RVHNNVELAQVAAEALM 526
           ++ +  R GRLE+A+ +   M  E   P++     +LGAC    +   +  + +  + + 
Sbjct: 285 MMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLIT 344

Query: 527 KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            +   N+     L +MY   GR     E+  ++  N I+ P   SW 
Sbjct: 345 DIRVSNA-----LLSMY---GRTGLVEELEAML--NKIENPDLVSWT 381



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 151/362 (41%), Gaps = 67/362 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-DIMPE-- 57
           +I  Y +  E   A+ +FD +  ++VVSW  M+  YI     G LEEA  +F D++ E  
Sbjct: 254 LIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIR---DGRLEEALQVFGDMISEGV 310

Query: 58  -----------------------------RDCVT----WNTVISGYAKTGEMEEALRLFN 84
                                         D +T     N ++S Y +TG +EE   + N
Sbjct: 311 DPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLN 370

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            +   ++VSW   IS   QNG    AI    +M       +  + S+++S       LD+
Sbjct: 371 KIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQ 430

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +    C +   G +  +   N LI  Y + G++  AR  FD            V    
Sbjct: 431 GMQ--FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFD------------VMHTH 476

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLF 256
           ++ SWNS+I  +A+ GD   A E+F +M    ++ D  ++  ++ G  H   +EE    F
Sbjct: 477 DVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFF 536

Query: 257 VKMPHPDTLT-----WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKD 310
             M    + T     +  M+    + G  + AL     MP + + + W +++A C+ +++
Sbjct: 537 RLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRN 596

Query: 311 YE 312
            +
Sbjct: 597 LD 598



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 41/185 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY---------------ISSRG---- 41
           +I+ Y K  +M  AR  FD M   DV SWN +I G+               + S G    
Sbjct: 453 LINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPD 512

Query: 42  -------------SGFLEEARYLFDIMPERDCVT-----WNTVISGYAKTGEMEEALRLF 83
                        SG +EE    F +M ++   T     +  +I    + G  +EALR+ 
Sbjct: 513 DSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMI 572

Query: 84  NSMPAR-NVVSWNAMISG--FLQNGDVAN-AIEFFDRMPGRDSASLSALVSGLIQNGELD 139
           N MP   + + W  +++     +N D+   A +    +  RDSAS   + +    +GE +
Sbjct: 573 NDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWE 632

Query: 140 EAARV 144
           +A +V
Sbjct: 633 DARKV 637


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 191/601 (31%), Positives = 311/601 (51%), Gaps = 91/601 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++S Y    ++ + R++FD M +++V  WN M+S Y      G  +E+  LF IM E+  
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK---IGDFKESICLFKIMVEKG- 195

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
                 I G       E A  LF+ +  R+V+SWN+MISG++ NG     +  + +M   
Sbjct: 196 ------IEG----KRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYL 245

Query: 118 -PGRDSASLSALVSGLIQNGELD--EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
               D A++ +++ G   +G L   +A   L    S     E  +   NTL+  Y + G 
Sbjct: 246 GIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSF----ERRINFSNTLLDMYSKCGD 301

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LE 230
           ++ A ++F+K+      GE      RN+VSW SMI  Y + G    A ++ +QM    ++
Sbjct: 302 LDGALRVFEKM------GE------RNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVK 349

Query: 231 RDTFSWNTMISG---------------YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
            D  +  +++                 YI   +ME  SNLFV          NA++  YA
Sbjct: 350 LDVVAITSILHACARSGSLDNGKDVHDYIKANNME--SNLFV---------CNALMDMYA 398

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFS 334
           + G++E A   F  M  K+++SWN+MI                      GE KPD  T +
Sbjct: 399 KCGSMEAANSVFSTMVVKDIISWNTMI----------------------GELKPDSRTMA 436

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLL 393
            +L   + +  L  G +IH  + +     D  + NAL+ +Y +CG +  AR++F +M   
Sbjct: 437 CVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF-DMIPS 495

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           K++VSW  MI G   HG+  EA+  F  MR   + P  ++FIS+L AC+H+GL+E+G + 
Sbjct: 496 KDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRF 555

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
           F  M N++ IEP++EH+A +VD++ R G L  A + I+ +P  PD  +WGALL  CR ++
Sbjct: 556 FYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYH 615

Query: 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           ++ELA+  AE + ++EPENS  YVLL N+YA+  +W++   +R  +    ++K  G SW+
Sbjct: 616 DIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWI 675

Query: 574 D 574
           +
Sbjct: 676 E 676



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 135/529 (25%), Positives = 224/529 (42%), Gaps = 114/529 (21%)

Query: 84  NSMPARN----VVSWNAMISGFLQNGDVANAIEFF-----DRMPGRDSASLSALVSGLIQ 134
           ++ P R     V  +NA I  F Q GD+ NA+E         +  +  +S+  L +GL  
Sbjct: 55  SATPTRTIDHQVTDYNAKILHFCQLGDLENAMELICMCKKSELETKTYSSVLQLCAGLKS 114

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
             +  +   ++       D    L      L+  Y   G ++E R++FD +         
Sbjct: 115 FTDGKKVHSIIKSNSVGVDEALGL-----KLVSFYATCGDLKEGRRVFDTME-------- 161

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVV--------------------SAREIFEQMLERDTF 234
               K+N+  WN M+  YAK GD                      SA E+F+++ +RD  
Sbjct: 162 ----KKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVI 217

Query: 235 SWNTMISGYIHV-------------------LDMEEASNLFVKMPHPDTLTW-------- 267
           SWN+MISGY+                     +D+    ++ V   +  TL+         
Sbjct: 218 SWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277

Query: 268 ------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
                       N ++  Y++ G+L+ AL  F++M ++N+VSW SMIAG   +   +GAI
Sbjct: 278 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAI 337

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-TKTVIPDVPINNALITMY 374
           KL  QM+ EG K D    +SIL   +    L  G  +H  +    +  ++ + NAL+ MY
Sbjct: 338 KLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMY 397

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           A+CG++  A  +F  M ++K+++SWN MIG                     ++ P   T 
Sbjct: 398 AKCGSMEAANSVFSTM-VVKDIISWNTMIG---------------------ELKPDSRTM 435

Query: 435 ISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
             VL ACA    +E G++ H   + N Y  +  + +  +LVD+  + G L  A  L   +
Sbjct: 436 ACVLPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDLYVKCGVLGLARLLFDMI 493

Query: 494 PFEPDKAVWGALLGACRVH--NNVELAQVAAEALMKVEPENSTPYVLLY 540
           P   D   W  ++    +H   N  +A         +EP+  +   +LY
Sbjct: 494 P-SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILY 541


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 194/628 (30%), Positives = 317/628 (50%), Gaps = 73/628 (11%)

Query: 1   MISGYVKRREMAKARKLFDE--MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE- 57
           +I+ Y K  ++  AR LFD   M + D VSWN +IS +++    G   EA  LF  M E 
Sbjct: 186 LIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTE---GKCLEALSLFRRMQEV 242

Query: 58  --------------------------------------RDCVTWNTVISGYAKTGEMEEA 79
                                                  D    N +I+ YAK G ME+A
Sbjct: 243 GVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDA 302

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQN 135
            R+F SM  R+ VSWN ++SG +QN    +A+ +F  M       D  S+  L++   ++
Sbjct: 303 ERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRS 362

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           G L     V        +G +  ++  NTLI  Y +   V+     F+ +          
Sbjct: 363 GNLLNGKEVHAYAIR--NGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECM---------- 410

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
              +++++SW ++I  YA+    + A  +F ++  +       MI   +      ++ N 
Sbjct: 411 --HEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRN- 467

Query: 256 FVKMPH--------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
           F++  H         D +  NA+V+ Y ++G+ + A   F+ +  K++VSW SMI  C  
Sbjct: 468 FIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVH 527

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPI 366
           N     A++LF  ++    +PD     S LS ++ +  L  G +IH  ++ K    + PI
Sbjct: 528 NGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPI 587

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            ++L+ MYA CG +  +R +F  +K  ++++ W +MI     HG   EA+ LFK M    
Sbjct: 588 ASSLVDMYACCGTVENSRKMFHSVKQ-RDLILWTSMINANGMHGCGNEAIALFKKMTDEN 646

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           V+P +ITF+++L AC+H+GL+ EG++ F+ M   Y +EP  EH+A +VD++ R   LE+A
Sbjct: 647 VIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEA 706

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
              ++ MP +P   VW ALLGAC +H+N EL ++AA+ L++ + +NS  Y L+ N++A  
Sbjct: 707 YQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAAD 766

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           GRW+D  EVRL MK N +KK  G SW++
Sbjct: 767 GRWNDVEEVRLRMKGNGLKKNPGCSWIE 794



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 144/544 (26%), Positives = 246/544 (45%), Gaps = 70/544 (12%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASL 125
           Y K G +++A+++F+ M  R + +WNAM+  F+ +G    AIE +  M       D+ + 
Sbjct: 89  YEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTF 148

Query: 126 SALVSGLIQNGELDEAAR---VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
            +++      GE    A    V VKCG     GE  V   N LI  YG+ G +  AR LF
Sbjct: 149 PSVLKACGALGESRLGAEIHGVAVKCGF----GE-FVFVCNALIAMYGKCGDLGGARVLF 203

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNT 238
           D I +           K + VSWNS+I  +   G  + A  +F +M E     +T+++  
Sbjct: 204 DGIMME----------KEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVA 253

Query: 239 MISGYIHVLDMEEASNLFVKM------------PHPDTLTWNAMVSGYAQIGNLELALDF 286
            + G      +E+ S  FVK+               D    NA+++ YA+ G +E A   
Sbjct: 254 ALQG------VEDPS--FVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERV 305

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F  M  ++ VSWN++++G   N+ Y  A+  F  MQ   +KPD+ +  ++++ S    +L
Sbjct: 306 FASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNL 365

Query: 347 HLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             G ++H    +  +  ++ I N LI MYA+C  +      FE M   K+++SW  +I G
Sbjct: 366 LNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMH-EKDLISWTTIIAG 424

Query: 406 CASHGFATEALELFK--SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
            A +    EA+ LF+   ++   V P  I   SVL AC  +GL     ++F   ++ Y  
Sbjct: 425 YAQNECHLEAINLFRKVQVKGMDVDPMMIG--SVLRAC--SGL---KSRNFIREIHGYVF 477

Query: 464 EPRIEHFA---SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           +  +       ++V++ G  G  + A    + +    D   W +++  C VHN + +   
Sbjct: 478 KRDLADIMLQNAIVNVYGEVGHRDYARRAFESIR-SKDIVSWTSMITCC-VHNGLPVE-- 533

Query: 521 AAEALMKVEPENSTP----YVLLYNMYADVGRWDDANEVR--LLMKSNNIKKPTGYSWVD 574
           A E    ++  N  P     +   +  A++       E+   L+ K   ++ P   S VD
Sbjct: 534 ALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVD 593

Query: 575 FSPC 578
              C
Sbjct: 594 MYAC 597


>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Glycine max]
          Length = 566

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 167/503 (33%), Positives = 281/503 (55%), Gaps = 23/503 (4%)

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSG 131
           +  A  +F+ + A + V WN +I    Q    ++ +  F RM       DS +  +++  
Sbjct: 78  LSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKA 137

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
                +  E  + L     RC   +DL     +LI  YG+ G + +ARK+FD +      
Sbjct: 138 CSGTCKAREG-KSLHGSAFRCGVDQDLYVG-TSLIDMYGKCGEIADARKVFDGMS----- 190

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEE 251
                   RN+VSW +M++ Y   GDVV AR++F++M  R+  SWN+M+ G++ + D+  
Sbjct: 191 -------DRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFVKMGDLSG 243

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           A  +F  MP  + +++  M+ GYA+ G++  A   F    +K++V+W+++I+G   N   
Sbjct: 244 ARGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLP 303

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINN--- 368
             A+++F++M++   KPD     S++S S+ +  L L   +   V+K  I D+  ++   
Sbjct: 304 NQALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICI-DLQQDHVIA 362

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           AL+ M A+CG +  A  +F+E K  ++VV + +MI G + HG   EA+ LF  M    + 
Sbjct: 363 ALLDMNAKCGNMERALKLFDE-KPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLT 421

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P  + F  +L+AC+ AGLV+EGR +F+SM  +Y I P  +H+A +VD++ R G + DA +
Sbjct: 422 PDEVAFTVILTACSRAGLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYE 481

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           LIK +P+EP    WGALLGAC+++ + EL ++ A  L ++EP N+  YVLL ++YA   R
Sbjct: 482 LIKLIPWEPHAGAWGALLGACKLYGDSELGEIVANRLFELEPLNAANYVLLSDIYAAAER 541

Query: 549 WDDANEVRLLMKSNNIKKPTGYS 571
           W D + VR  M+   ++K  G S
Sbjct: 542 WIDVSLVRSKMRERRVRKIPGSS 564



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 164/302 (54%), Gaps = 18/302 (5%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K  E+A ARK+FD M  R+VVSW  M+ GY++    G + EAR LFD MP R+ 
Sbjct: 169 LIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAV---GDVVEARKLFDEMPHRNV 225

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN+++ G+ K G++  A  +F++MP +NVVS+  MI G+ + GD+A A   FD    +
Sbjct: 226 ASWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEK 285

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  + SAL+SG +QNG  ++A RV ++        ++ +    +L+    Q G +E A+ 
Sbjct: 286 DVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILV--SLMSASAQLGHLELAQW 343

Query: 181 LFDKIPVNC-DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           +   +   C D  + +V          +++   AK G++  A ++F++   RD   + +M
Sbjct: 344 VDSYVSKICIDLQQDHV--------IAALLDMNAKCGNMERALKLFDEKPRRDVVLYCSM 395

Query: 240 ISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           I G       EEA NLF +M      PD + +  +++  ++ G ++   ++F+ M QK  
Sbjct: 396 IQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSRAGLVDEGRNYFQSMKQKYC 455

Query: 296 VS 297
           +S
Sbjct: 456 IS 457



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 188/372 (50%), Gaps = 43/372 (11%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           ++D     ++I  Y K GE+ +A ++F+ M  RNVVSW AM+ G++  GDV  A + FD 
Sbjct: 160 DQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDE 219

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           MP R+ AS ++++ G ++ G+L  A  V           E  V ++ T+I GY + G + 
Sbjct: 220 MPHRNVASWNSMLQGFVKMGDLSGARGVFDAM------PEKNVVSFTTMIDGYAKAGDMA 273

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERD 232
            AR LFD               ++++V+W+++I  Y + G    A  +F +M    ++ D
Sbjct: 274 AARFLFD------------CSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPD 321

Query: 233 TFSWNTMISGYIHVLDMEEA-------SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
            F   +++S    +  +E A       S + + +     +   A++   A+ GN+E AL 
Sbjct: 322 EFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIA--ALLDMNAKCGNMERALK 379

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GI 343
            F   P++++V + SMI G   +   E A+ LF +M +EG  PD   F+ IL+  S  G+
Sbjct: 380 LFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSRAGL 439

Query: 344 VDLHLGMQIHQ-MVTKTVIPDVPINNA-LITMYARCGAIVEARIIFEEMKLL---KNVVS 398
           VD   G    Q M  K  I  +P + A ++ + +R G I +A   +E +KL+    +  +
Sbjct: 440 VD--EGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDA---YELIKLIPWEPHAGA 494

Query: 399 WNAMIGGCASHG 410
           W A++G C  +G
Sbjct: 495 WGALLGACKLYG 506



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 128/291 (43%), Gaps = 26/291 (8%)

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMI-AGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
            +  +  L  A   F R+   + V WN++I + C+ N  +   +  F +M+  G  PD  
Sbjct: 71  AHTLLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKNL-FSHTLSAFARMKAHGALPDSF 129

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEM 390
           T+ S++   SG      G  +H    +  V  D+ +  +LI MY +CG I +AR +F+ M
Sbjct: 130 TYPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGM 189

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
              +NVVSW AM+ G  + G   EA +LF  M    V     ++ S+L      G +   
Sbjct: 190 S-DRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNV----ASWNSMLQGFVKMGDLSGA 244

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
           R  F +M      E  +  F +++D   + G +  A  L      E D   W AL+    
Sbjct: 245 RGVFDAMP-----EKNVVSFTTMIDGYAKAGDMAAARFLFD-CSLEKDVVAWSALISG-Y 297

Query: 511 VHNNVELAQVAAEALMKVEPENSTP--YVLLYNMYA-------DVGRWDDA 552
           V N   L   A    +++E  N  P  ++L+  M A       ++ +W D+
Sbjct: 298 VQNG--LPNQALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDS 346


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 199/707 (28%), Positives = 329/707 (46%), Gaps = 148/707 (20%)

Query: 12  AKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM-------PER------ 58
           + +R +FD++ ++++  WN ++S Y  +      E+A  +F  +       P+       
Sbjct: 51  SDSRMVFDKLRRKNLFQWNAIVSAYTRNE---LFEDAMSIFSELISVTEHKPDNFTLPCV 107

Query: 59  ---------------------------DCVTWNTVISGYAKTGEMEEALRLFNSMPARNV 91
                                      D    N +I+ Y K G +EEA+++F  MP RN+
Sbjct: 108 IKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNL 167

Query: 92  VSWNAMISGFLQNG---------------------DVANAIEFFDRMPGRDSASLSALVS 130
           VSWN++I GF +NG                     DVA  +       G +       V 
Sbjct: 168 VSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVH 227

Query: 131 GLIQNGELDEAARV---LVKCGSRC-----------DGGEDLVRAYNTLIVGYG------ 170
           GL     L+E   V   L+   S+C              +  + ++N++I GY       
Sbjct: 228 GLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVC 287

Query: 171 ------QRGRVEEAR------KLFDKIPVNCDRGEGNVRFKRNIVSW-----------NS 207
                 Q+ + E+A+       + + +PV  +R E     + +  SW           N+
Sbjct: 288 RTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANA 347

Query: 208 MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PD 263
            I  Y + G + S+  +F+ M  +   SWN ++ GY    D  +A +L+++M      PD
Sbjct: 348 FIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPD 407

Query: 264 TLTWNAMVSGYAQIGNLE-------------LALD----------------------FFK 288
             T  +++   +++ +L              LA+D                       F 
Sbjct: 408 WFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFD 467

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            M  ++LVSWN MIAG   N   + AI LF QM  +G +P       +    S +  L L
Sbjct: 468 GMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRL 527

Query: 349 GMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G ++H    K  +  D+ +++++I MYA+ G I  ++ IF+ ++  K+V SWN +I G  
Sbjct: 528 GKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLRE-KDVASWNVIIAGYG 586

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
            HG   EALELF+ M    + P   TF  +L AC+HAGLVE+G ++F  M+N + IEP++
Sbjct: 587 IHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKL 646

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
           EH+  +VD++GR GR++DA+ LI+ MP +PD  +W +LL +CR+H N+ L +  A  L++
Sbjct: 647 EHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLE 706

Query: 528 VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +EPE    YVL+ N++A  G+WDD   VR  MK   ++K  G SW++
Sbjct: 707 LEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIE 753



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 150/323 (46%), Gaps = 53/323 (16%)

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
            L+   GQR  +E  R+L + +         + +F  + V    +I  Y+  G    +R 
Sbjct: 3   VLLQACGQRKDIEVGRRLHEMVS-------ASTQFCNDFVLNTRIITMYSMCGSPSDSRM 55

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLF-----VKMPHPDTLTW----------- 267
           +F+++  ++ F WN ++S Y      E+A ++F     V    PD  T            
Sbjct: 56  VFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLL 115

Query: 268 ------------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                                   NA+++ Y + G +E A+  F+ MP++NLVSWNS+I 
Sbjct: 116 DLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIIC 175

Query: 304 GCETNKDYEGAIKLFIQMQVEGEK--PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
           G   N   + +   F +M V  E   PD  T  ++L + +G  D+  GM +H +  K  +
Sbjct: 176 GFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGL 235

Query: 362 -PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
             ++ +NN+LI MY++C  + EA+++F++    KN+VSWN+MIGG A          L +
Sbjct: 236 NEELMVNNSLIDMYSKCRFLSEAQLLFDKND-KKNIVSWNSMIGGYAREEDVCRTFYLLQ 294

Query: 421 SMRS--FKVLPTYITFISVLSAC 441
            M++   K+     T ++VL  C
Sbjct: 295 KMQTEDAKMKADEFTILNVLPVC 317



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 111/465 (23%), Positives = 200/465 (43%), Gaps = 72/465 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY---------------ISSRGSGFL 45
           +I  Y K R +++A+ LFD+  ++++VSWN MI GY               + +  +   
Sbjct: 245 LIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMK 304

Query: 46  EEARYLFDIMP------------ERDCVTW-----------NTVISGYAKTGEMEEALRL 82
            +   + +++P            E    +W           N  I+ Y + G +  + R+
Sbjct: 305 ADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERV 364

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGEL 138
           F+ M  + V SWNA++ G+ QN D   A++ + +M       D  ++ +L+    +   L
Sbjct: 365 FDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSL 424

Query: 139 ---DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
              +E     ++ G   D    +     +L+  Y   G+   A+ LFD +          
Sbjct: 425 HYGEEIHGFALRNGLAVDPFIGI-----SLLSLYICCGKPFAAQVLFDGME--------- 470

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI------SGYIHVLDM 249
               R++VSWN MI  Y++ G    A  +F QML      +   I         +  L +
Sbjct: 471 ---HRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRL 527

Query: 250 EEASNLFVKMPH--PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
            +  + F    H   D    ++++  YA+ G + L+   F R+ +K++ SWN +IAG   
Sbjct: 528 GKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGI 587

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVP 365
           +   + A++LF +M   G KPD  TF+ IL   S  G+V+  L      +    + P + 
Sbjct: 588 HGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLE 647

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
               ++ M  R G I +A  + EEM    +   W++++  C  HG
Sbjct: 648 HYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHG 692



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 130/245 (53%), Gaps = 11/245 (4%)

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM-QVEGEKP 328
           +++ Y+  G+   +   F ++ +KNL  WN++++    N+ +E A+ +F ++  V   KP
Sbjct: 40  IITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKP 99

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIF 387
           D  T   ++   +G++DL LG  IH M TK  ++ DV + NALI MY +CG + EA  +F
Sbjct: 100 DNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVF 159

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM----RSFKVLPTYITFISVLSACAH 443
           E M   +N+VSWN++I G + +GF  E+   F+ M     SF  +P   T ++VL  CA 
Sbjct: 160 EHMP-ERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESF--VPDVATLVTVLPVCAG 216

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
              +E+G      +  + G+   +    SL+D+  +   L +A  L+     + +   W 
Sbjct: 217 EEDIEKG-MAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEA-QLLFDKNDKKNIVSWN 274

Query: 504 ALLGA 508
           +++G 
Sbjct: 275 SMIGG 279



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 90/166 (54%), Gaps = 8/166 (4%)

Query: 345 DLHLGMQIHQMVTKTV--IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
           D+ +G ++H+MV+ +     D  +N  +ITMY+ CG+  ++R++F++++  KN+  WNA+
Sbjct: 13  DIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLR-RKNLFQWNAI 71

Query: 403 IGGCASHGFATEALELFKSMRSF-KVLPTYITFISVLSACAHAGLVEEGR-QHFKSMVNE 460
           +     +    +A+ +F  + S  +  P   T   V+ AC  AGL++ G  Q    M  +
Sbjct: 72  VSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQIIHGMATK 129

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             +   +    +L+ + G+ G +E+A+ + + MP E +   W +++
Sbjct: 130 MDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMP-ERNLVSWNSII 174



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 123/278 (44%), Gaps = 68/278 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           ++S Y+   +   A+ LFD M  R +VSWNVMI+GY     +G  +EA  LF       I
Sbjct: 449 LLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQ---NGLPDEAINLFRQMLSDGI 505

Query: 55  MP---------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
            P                                   D    +++I  YAK G +  + R
Sbjct: 506 QPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQR 565

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALV-----SGL 132
           +F+ +  ++V SWN +I+G+  +G    A+E F++M       D  + + ++     +GL
Sbjct: 566 IFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGL 625

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           +++G L+   ++L          E  +  Y  ++   G+ GR+++A +L +++P     G
Sbjct: 626 VEDG-LEYFNQML-----NLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMP-----G 674

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
           + + R       W+S++      G++    ++  ++LE
Sbjct: 675 DPDSRI------WSSLLSSCRIHGNLGLGEKVANKLLE 706


>gi|255542982|ref|XP_002512554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548515|gb|EEF50006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/445 (36%), Positives = 259/445 (58%), Gaps = 23/445 (5%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV 61
           IS + +  ++ +ARK+FDE+P + ++SWN +++GY  ++      EA  LF+ MP+R+ V
Sbjct: 24  ISHFARIGQINRARKIFDELPYKTIISWNAIVAGYFQNKQP---REAHDLFNKMPDRNTV 80

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           +WN +ISGY K G + EA  +F+ MP RNVVSW AM+ G++Q G +  A   F  MP ++
Sbjct: 81  SWNGLISGYVKNGMINEAREVFDKMPERNVVSWTAMVRGYIQEGMIKQAESLFWEMPEKN 140

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S + ++ GLI++G ++EA ++      +     D+V A   +I G    GR+ EAR++
Sbjct: 141 VVSWTVMLGGLIEDGRVNEAIKLYDLMPLK-----DVV-ARTNMIGGLCMEGRLSEAREI 194

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
           FD++P            KRN+V+W +MI  YA    V  AR++FE M +++  +W  M+ 
Sbjct: 195 FDEMP------------KRNVVAWTTMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLM 242

Query: 242 GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           GY     ++EA+ LF  MP       N M+ G+ Q G +  A   F +M +K+  +W++M
Sbjct: 243 GYTRSGRIKEAAELFEAMPMKPVPACNEMIIGFGQSGEVGKAKWTFDQMREKDDGTWSAM 302

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTV 360
           I   E       A+ LF  MQ EG +P+  +  SILS+   +  L  G Q+H Q+V    
Sbjct: 303 IKVYERKGLELEALDLFRLMQREGVRPNFPSIISILSVCGSLASLDYGRQVHTQLVRSQF 362

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
             DV +++ LITMY +CG +V+A+ +F+    +K+ V WN++I G A HG   EALE+F 
Sbjct: 363 DFDVYVSSVLITMYIKCGDLVKAKRVFDRFS-MKDTVMWNSIITGYAQHGLGEEALEVFF 421

Query: 421 SMRSFKVLPTYITFISVLSACAHAG 445
            M S  + P  ITFI VL+AC+++G
Sbjct: 422 EMLSSGISPDEITFIGVLTACSYSG 446



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 133/255 (52%), Gaps = 12/255 (4%)

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP 262
           +S NS I  +A+ G +  AR+IF+++  +   SWN +++GY       EA +LF KMP  
Sbjct: 18  ISSNSQISHFARIGQINRARKIFDELPYKTIISWNAIVAGYFQNKQPREAHDLFNKMPDR 77

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           +T++WN ++SGY + G +  A + F +MP++N+VSW +M+ G       + A  LF +M 
Sbjct: 78  NTVSWNGLISGYVKNGMINEAREVFDKMPERNVVSWTAMVRGYIQEGMIKQAESLFWEM- 136

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVE 382
                P+++  S  + +   I D  +   I ++     + DV     +I      G + E
Sbjct: 137 -----PEKNVVSWTVMLGGLIEDGRVNEAI-KLYDLMPLKDVVARTNMIGGLCMEGRLSE 190

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           AR IF+EM   +NVV+W  MI G A +     A +LF+ M         +T+ ++L    
Sbjct: 191 AREIFDEMP-KRNVVAWTTMISGYAMNNKVDVARKLFEVMPD----KNEVTWTAMLMGYT 245

Query: 443 HAGLVEEGRQHFKSM 457
            +G ++E  + F++M
Sbjct: 246 RSGRIKEAAELFEAM 260


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 199/629 (31%), Positives = 317/629 (50%), Gaps = 75/629 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +++ Y K   +  ARK FD M  R VVSW +MISGY     +G   +A  ++  M     
Sbjct: 121 ILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGY---SQNGQENDAIIMYIQMLRSGY 177

Query: 59  --DCVTWNTVISGYAKTGEMEEALRL----FNSMPARNVVSWNAMISGFLQNGDVANAIE 112
             D +T+ ++I      G+++   +L      S    ++++ NA+IS + + G +A+A +
Sbjct: 178 FPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASD 237

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
            F  +  +D  S +++++G  Q G   EA  +        D     V   N  I G    
Sbjct: 238 VFTMISTKDLISWASMITGFTQLGYEIEALYLFR------DMFRQGVYQPNEFIFG---- 287

Query: 173 GRVEEARKLFD-----KIPVNCDR-GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
                 R L       +I   C + G G     RN+ +  S+   YAK G + SA+  F 
Sbjct: 288 SVFSACRSLLKPEFGRQIQGMCAKFGLG-----RNVFAGCSLCDMYAKFGFLPSAKRAFY 342

Query: 227 QMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW--------------- 267
           Q+   D  SWN +I+   +  D+ EA   F +M H    PD +T+               
Sbjct: 343 QIESPDLVSWNAIIAALANS-DVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQ 401

Query: 268 --------------------NAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCE 306
                               N++++ Y +  NL  A + FK + +  NLVSWN++++ C 
Sbjct: 402 GMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACS 461

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVP 365
            +K    A +LF  M     KPD  T ++IL   + +V L +G Q+H    K+ ++ DV 
Sbjct: 462 QHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVS 521

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           ++N LI MYA+CG +  AR +F+  +   ++VSW+++I G A  G   EAL LF+ MR+ 
Sbjct: 522 VSNRLIDMYAKCGLLKHARYVFDSTQN-PDIVSWSSLIVGYAQFGLGQEALNLFRMMRNL 580

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            V P  +T++ VLSAC+H GLVEEG   + +M  E GI P  EH + +VD++ R G L +
Sbjct: 581 GVQPNEVTYLGVLSACSHIGLVEEGWHLYNTMEIELGIPPTREHVSCMVDLLARAGCLYE 640

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A + IK   F+PD  +W  LL +C+ H NV++A+ AAE ++K++P NS   VLL N++A 
Sbjct: 641 AENFIKKTGFDPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHAS 700

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            G W +   +R LMK   ++K  G SW++
Sbjct: 701 AGNWKEVARLRNLMKQMGVQKVPGQSWIE 729



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 218/468 (46%), Gaps = 39/468 (8%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           + D V  N +++ Y K G +++A + F++M  R+VVSW  MISG+ QNG   +AI  + +
Sbjct: 112 QPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQ 171

Query: 117 MPGR----DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGY 169
           M       D  +  +++      G++D   ++   ++K      G +  + A N LI  Y
Sbjct: 172 MLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIK-----SGYDHHLIAQNALISMY 226

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
            + G++  A  +F  I              ++++SW SMI  + + G  + A  +F  M 
Sbjct: 227 TKFGQIAHASDVFTMIST------------KDLISWASMITGFTQLGYEIEALYLFRDMF 274

Query: 230 ERDTFSWNTMISGYI----HVLDMEEASNLFVKMPHPDTLTWN-----AMVSGYAQIGNL 280
            +  +  N  I G +      L   E       M     L  N     ++   YA+ G L
Sbjct: 275 RQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFL 334

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
             A   F ++   +LVSWN++IA    N D   AI  F QM   G  PD  TF ++L   
Sbjct: 335 PSAKRAFYQIESPDLVSWNAIIAAL-ANSDVNEAIYFFCQMIHMGLMPDDITFLNLLCAC 393

Query: 341 SGIVDLHLGMQIHQMVTKTVIPDV-PINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
              + L+ GMQIH  + K  +  V  + N+L+TMY +C  + +A  +F+++    N+VSW
Sbjct: 394 GSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSW 453

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMV 458
           NA++  C+ H    EA  LFK M   +  P  IT  ++L  CA    +E G Q H  S+ 
Sbjct: 454 NAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVK 513

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +   ++  + +   L+D+  + G L+ A  +       PD   W +L+
Sbjct: 514 SGLVVDVSVSN--RLIDMYAKCGLLKHARYVFDSTQ-NPDIVSWSSLI 558



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 122/250 (48%), Gaps = 5/250 (2%)

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
            PD +  N +++ Y + G+L+ A   F  M  +++VSW  MI+G   N     AI ++IQ
Sbjct: 112 QPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQ 171

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPI-NNALITMYARCGA 379
           M   G  PD+ TF SI+       D+ LG Q+H  V K+      I  NALI+MY + G 
Sbjct: 172 MLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQ 231

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-RSFKVLPTYITFISVL 438
           I  A  +F  M   K+++SW +MI G    G+  EAL LF+ M R     P    F SV 
Sbjct: 232 IAHASDVF-TMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVF 290

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           SAC      E GRQ  + M  ++G+   +    SL D+  + G L  A      +   PD
Sbjct: 291 SACRSLLKPEFGRQ-IQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIE-SPD 348

Query: 499 KAVWGALLGA 508
              W A++ A
Sbjct: 349 LVSWNAIIAA 358


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 180/546 (32%), Positives = 285/546 (52%), Gaps = 26/546 (4%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L  A  LFD +P+ +   +N +I GY+ + +  ++L L+  M    ++  N     F+  
Sbjct: 84  LRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILP-NQFTIPFVLK 142

Query: 105 GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRC-------DGGED 157
              A +  +        S  L       +QN  L+    + V CG          D  E 
Sbjct: 143 ACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILN----IYVACGLITSARRVFDDISER 198

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
            + ++N++I GY + GR EEA  +F        R    V  + ++ +   ++    K G+
Sbjct: 199 TLVSWNSMINGYSKMGRSEEAVLMF--------REMQEVGLEPDVFTLVGLLSVSTKHGN 250

Query: 218 VVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
               R +   M    +E D+   N ++  Y    +++ A ++F +M   D ++W  M++ 
Sbjct: 251 FDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINA 310

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           YA  G ++ AL+FF +MP KN+VSWNS+I        Y  A+ LF +M   G   +  T 
Sbjct: 311 YANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTL 370

Query: 334 SSILSMSSGIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
            +ILS  S + DL LG Q H  +    +     + NA+I MYA+CGA+  A  +F  M  
Sbjct: 371 VAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPE 430

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
            KN VSWN +IG  A HG+  EA+E+F+ M++  V P  ITF  +LSAC+H+GLV+ G+ 
Sbjct: 431 -KNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQH 489

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           +F+ M   +GI P +EH+A +VD++GR G L +A+ LIK MP +PD  VW ALLGACR +
Sbjct: 490 YFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTY 549

Query: 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
            N+ + +   + L+++   NS  YVLL NMY++  RWDD   +  ++  N IKK    S+
Sbjct: 550 GNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAISF 609

Query: 573 VDFSPC 578
           ++   C
Sbjct: 610 IEIDGC 615



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 201/401 (50%), Gaps = 43/401 (10%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP-- 87
           N +++ Y++    G +  AR +FD + ER  V+WN++I+GY+K G  EEA+ +F  M   
Sbjct: 173 NAILNIYVAC---GLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEV 229

Query: 88  --ARNVVSWNAMISGFLQNG--DVANAIEFFDRMPG--RDSASLSALVSGLIQNGELDEA 141
               +V +   ++S   ++G  D+   +     + G   DS   +AL+    + G L  A
Sbjct: 230 GLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCA 289

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             V  +   +     D+V ++  +I  Y   G ++ A + F+++P             +N
Sbjct: 290 KSVFDQMLDK-----DVV-SWTCMINAYANHGLIDCALEFFNQMP------------GKN 331

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT----MISGYIHVLDM----EEAS 253
           +VSWNS+I C+ + G    A ++F +M +    + +T    ++S   H+ D+    +  S
Sbjct: 332 VVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHS 391

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
            +F           NA++  YA+ G L+ A+D F  MP+KN VSWN +I     +   + 
Sbjct: 392 YIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKE 451

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKT--VIPDVPINNA 369
           AI++F +MQ  G  PD  TF+ +LS    SG+VD   G    +++  T  + PDV     
Sbjct: 452 AIEMFEKMQASGVCPDEITFTGLLSACSHSGLVD--TGQHYFEIMNLTFGISPDVEHYAC 509

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           ++ +  R G + EA  + ++M +  +VV W+A++G C ++G
Sbjct: 510 MVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYG 550



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 175/402 (43%), Gaps = 76/402 (18%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER------ 58
           YV    +  AR++FD++ +R +VSWN MI+GY S  G    EEA  +F  M E       
Sbjct: 179 YVACGLITSARRVFDDISERTLVSWNSMINGY-SKMGRS--EEAVLMFREMQEVGLEPDV 235

Query: 59  ---------------------------------DCVTWNTVISGYAKTGEMEEALRLFNS 85
                                            D +  N ++  YAK G ++ A  +F+ 
Sbjct: 236 FTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQ 295

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
           M  ++VVSW  MI+ +  +G +  A+EFF++MPG++  S ++++   +Q G   EA  + 
Sbjct: 296 MLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLF 355

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGY----GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            +    CD G   V A +T +V         G +   ++    I  N      N+     
Sbjct: 356 YR---MCDSG---VMANDTTLVAILSSCSHMGDLALGKQAHSYIFDN------NITLSAT 403

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           +   N++I  YAK G + +A ++F  M E++  SWN +I         +EA  +F KM  
Sbjct: 404 LC--NAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQA 461

Query: 262 ----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG---- 313
               PD +T+  ++S  +  G ++    +F+ M     +S +     C    D  G    
Sbjct: 462 SGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMV--DLLGRRGL 519

Query: 314 ---AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
              AI L  +M V   KPD   +S++L       +L +G QI
Sbjct: 520 LGEAISLIKKMPV---KPDVVVWSALLGACRTYGNLAIGKQI 558



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 58/273 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEA------------ 48
           MI+ Y     +  A + F++MP ++VVSWN +I  ++     G   EA            
Sbjct: 307 MINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQ---EGLYAEAVDLFYRMCDSGV 363

Query: 49  ---------------------------RYLFDIMPERDCVTWNTVISGYAKTGEMEEALR 81
                                       Y+FD          N +I  YAK G ++ A+ 
Sbjct: 364 MANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMD 423

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F  MP +N VSWN +I     +G    AIE F++M       D  + + L+S    +G 
Sbjct: 424 VFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGL 483

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           +D       +  +   G    V  Y  ++   G+RG + EA  L  K+PV          
Sbjct: 484 VDTGQHYF-EIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPV---------- 532

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
            K ++V W++++      G++   ++I +Q+LE
Sbjct: 533 -KPDVVVWSALLGACRTYGNLAIGKQIMKQLLE 564


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 205/613 (33%), Positives = 320/613 (52%), Gaps = 67/613 (10%)

Query: 1    MISGYVKRREMAKARKLFDEMPQRDVVSWN-----VMISGYISSRGSGFLEEAR------ 49
            ++ G  ++ +  +A K+F EM  +D+V  N     V++S +  +  S   E  R      
Sbjct: 423  LMVGLARQHQGEEAAKVFKEM--KDLVEINSESLVVLLSTF--TEFSNLKEGKRKGQEVH 478

Query: 50   -YLF--DIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGD 106
             YLF   ++  R  +  N +++ Y K   ++ A  +F  MP+++ VSWN+MISG   N  
Sbjct: 479  AYLFRSGLVDARISIG-NALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNER 537

Query: 107  VANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-VRA 161
               A+  F  M        + S+ + +S     G L    ++    G     G DL V  
Sbjct: 538  FEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIH---GEGFKWGLDLDVSV 594

Query: 162  YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK-AGDVVS 220
             N L+  Y +   + E +K+F ++P            + + VSWNS I   AK    V+ 
Sbjct: 595  SNALLTLYAETDSINECQKVFFQMP------------EYDQVSWNSFIGALAKYEASVLQ 642

Query: 221  AREIFEQMLE------RDTF--------SWNTMISGY-IHVLDMEEASNLFVKMPHPDTL 265
            A + F +M++      R TF        S++ +  G+ IH L ++ +          D  
Sbjct: 643  ALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVA-------DDNA 695

Query: 266  TWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
              NA+++ Y +   +E     F RM ++ + VSWNSMI+G   +     A+ L   M   
Sbjct: 696  IENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQR 755

Query: 325  GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEA 383
            G+K D  TF+++LS  + +  L  GM++H    +  +  DV + +AL+ MYA+CG I  A
Sbjct: 756  GQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYA 815

Query: 384  RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
               FE M + +N+ SWN+MI G A HG   +AL++F  M+     P ++TF+ VLSAC+H
Sbjct: 816  SRFFELMPV-RNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSH 874

Query: 444  AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
             GLV+EG +HFKSM   YG+ PRIEHF+ +VD++GR G ++   D IK MP +P+  +W 
Sbjct: 875  VGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWR 934

Query: 504  ALLGACRVHN--NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
             +LGAC   N  N EL Q AA+ L+++EP+N+  YVLL NM+A  G W+D  E RL M+ 
Sbjct: 935  TVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRK 994

Query: 562  NNIKKPTGYSWVD 574
              +KK  G SWV+
Sbjct: 995  AAVKKDAGCSWVN 1007



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 233/488 (47%), Gaps = 67/488 (13%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D    NT+I+ Y + G +  A +LF+ MP +N+VSW+ +ISG+ QN           RMP
Sbjct: 174 DVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQN-----------RMP 222

Query: 119 GRDSASLSALV-SGLIQNG-ELDEAARVLVKCGS--------------RCDGGEDLVRAY 162
               +    ++ SGL+ N   +  A R   +CGS              +     D++ + 
Sbjct: 223 DEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILS- 281

Query: 163 NTLIVGYGQ-RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
           N L+  Y    G +++A ++FD+I              RN V+WNS+I  Y + GD VSA
Sbjct: 282 NVLMSMYSDCSGSIDDAHRVFDEIKF------------RNSVTWNSIISVYCRRGDAVSA 329

Query: 222 REIFEQM--------LERDTFSWNTMISGYIHVLD--MEEASNLFVKMPHP----DTLTW 267
            ++F  M        L  + ++  ++++    + D  +     +  ++       D    
Sbjct: 330 FKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVG 389

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           +A+V+G+A+ G ++ A   FK+M  +N V+ N ++ G       E A K+F +M+ +  +
Sbjct: 390 SALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMK-DLVE 448

Query: 328 PDRHTFSSILSMSSGIVDL----HLGMQIHQMVTKTVIPD--VPINNALITMYARCGAIV 381
            +  +   +LS  +   +L      G ++H  + ++ + D  + I NAL+ MY +C AI 
Sbjct: 449 INSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAID 508

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
            A  +F+ M   K+ VSWN+MI G   +    EA+  F +M+   ++P+  + IS LS+C
Sbjct: 509 NACSVFQLMP-SKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSC 567

Query: 442 AHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           +  G +  GRQ H +    ++G++  +    +L+ +      + +   +   MP E D+ 
Sbjct: 568 SSLGWLTLGRQIHGEGF--KWGLDLDVSVSNALLTLYAETDSINECQKVFFQMP-EYDQV 624

Query: 501 VWGALLGA 508
            W + +GA
Sbjct: 625 SWNSFIGA 632



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 141/288 (48%), Gaps = 14/288 (4%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D    N +++ Y +IGNL  A   F  MPQKNLVSW+ +I+G   N+  + A  LF  + 
Sbjct: 174 DVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVI 233

Query: 323 VEGEKPDRHTFSSIL--SMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARC-G 378
             G  P+     S L      G   + LGMQIH  + K   + D+ ++N L++MY+ C G
Sbjct: 234 SSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSG 293

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR----SFKVLPTYITF 434
           +I +A  +F+E+K  +N V+WN++I      G A  A +LF  M+       + P   T 
Sbjct: 294 SIDDAHRVFDEIK-FRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTL 352

Query: 435 ISVLSAC---AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
            S+++A    A  GLV    +   + + + G    +   ++LV+   R+G ++ A  + K
Sbjct: 353 CSLVTAACSLADCGLVL--LEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFK 410

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            M       + G ++G  R H   E A+V  E    VE  + +  VLL
Sbjct: 411 QMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLL 458



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 180/376 (47%), Gaps = 39/376 (10%)

Query: 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
           G  D V   NTLI  Y + G +  ARKLFD++P            ++N+VSW+ +I  Y 
Sbjct: 170 GFTDDVFFCNTLINIYVRIGNLVSARKLFDEMP------------QKNLVSWSCLISGYT 217

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL---------FVKMPH-PD 263
           +      A  +F+ ++       +  +   +       ++ +           K+P   D
Sbjct: 218 QNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSD 277

Query: 264 TLTWNAMVSGYAQI-GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
            +  N ++S Y+   G+++ A   F  +  +N V+WNS+I+      D   A KLF  MQ
Sbjct: 278 MILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQ 337

Query: 323 VEGE----KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT----VIPDVPINNALITMY 374
           +EG     +P+ +T  S+++ +  + D  L + + QM+T+      + D+ + +AL+  +
Sbjct: 338 MEGVELNLRPNEYTLCSLVTAACSLADCGLVL-LEQMLTRIEKSGFLRDLYVGSALVNGF 396

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           AR G +  A++IF++M   +N V+ N ++ G A      EA ++FK M+    + +  + 
Sbjct: 397 ARYGLMDCAKMIFKQM-YDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSE-SL 454

Query: 435 ISVLSACAHAGLVEEGR---QHFKSMVNEYG-IEPRIEHFASLVDIVGRHGRLEDAMDLI 490
           + +LS       ++EG+   Q   + +   G ++ RI    +LV++ G+   +++A  + 
Sbjct: 455 VVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVF 514

Query: 491 KGMPFEPDKAVWGALL 506
           + MP   D   W +++
Sbjct: 515 QLMP-SKDTVSWNSMI 529


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 186/583 (31%), Positives = 301/583 (51%), Gaps = 62/583 (10%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           SG L  AR LFD MP+ +  T N ++S  A    + +  RLF SMP R+ VS+NA+I+GF
Sbjct: 58  SGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGF 117

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALV-------SGLIQNGEL--DEAARVLVKCGSRC 152
              G  A A   +  +   ++    A V       SG++       D A    V C    
Sbjct: 118 SGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMR 177

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
            G       ++ L+  Y + G + +A+++FD++ V            +N+V +N+MI   
Sbjct: 178 LGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVV------------KNVVMYNTMITGL 225

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP------------ 260
            +   V  AR +FE M++RD+ +W TM++G        EA ++F +M             
Sbjct: 226 LRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFG 285

Query: 261 ------------------HPDTL---------TWNAMVSGYAQIGNLELALDFFKRMPQK 293
                             H  T+           +A+V  Y++  ++ LA   F+RM  K
Sbjct: 286 SILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCK 345

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           N++SW +MI G   N   E A+++F +MQ +G KP+  T  S++S  + +  L  G Q H
Sbjct: 346 NIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFH 405

Query: 354 QM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
            M +   + P + +++AL+T+Y +CG+I +A  +F+EM    + VS+ A++ G A  G A
Sbjct: 406 CMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPF-HDQVSYTALVSGYAQFGKA 464

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
            E ++LF+ M    V P  +TFI VLSAC+ +GLVE+G  +F SM  ++GI    +H+  
Sbjct: 465 KETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTC 524

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           ++D+  R GRL++A + I+ MP  PD   W  LL ACR+  ++E+ + AAE L+K +P+N
Sbjct: 525 MIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQN 584

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
              YVLL +M+A  G W +   +R  M+   +KK  G SW+ +
Sbjct: 585 PASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKY 627



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 216/448 (48%), Gaps = 46/448 (10%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +++ YA++G +  A RLF++MP  N+ + NA++S       + +    F  MP RD+ 
Sbjct: 49  NHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQRDAV 108

Query: 124 SLSALVSGL---IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           S +AL++G            A R L++  +  DG    VR     + G          R 
Sbjct: 109 SYNALIAGFSGAGAPARAAGAYRALLREEAVVDGAR--VRPSRITMSGMVMAASALGDRA 166

Query: 181 LFDKIPVNCDR-GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
           L  ++     R G G   F     +W+ ++  YAK G +  A+ +F++M+ ++   +NTM
Sbjct: 167 LGRQVHCQIMRLGFGAYAF-----TWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTM 221

Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           I+G +    +EEA  +F  M   D++TW  MV+G  Q G    ALD F+R          
Sbjct: 222 ITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRR---------- 271

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
                                M+ EG   D++TF SIL+    +     G QIH    +T
Sbjct: 272 ---------------------MRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRT 310

Query: 360 VIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
           +   ++ + +AL+ MY++C +I  A  +F  M   KN++SW AMI G   +G   EA+ +
Sbjct: 311 LYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMT-CKNIISWTAMIVGYGQNGCGEEAVRV 369

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  M++  + P   T  SV+S+CA+   +EEG Q F  M    G+ P I   ++LV + G
Sbjct: 370 FSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQ-FHCMALVSGLRPYITVSSALVTLYG 428

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           + G +EDA  L   MPF  D+  + AL+
Sbjct: 429 KCGSIEDAHRLFDEMPFH-DQVSYTALV 455



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 114/284 (40%), Gaps = 79/284 (27%)

Query: 240 ISGYIHVLDMEEASNLFVKMPHPD-TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
           + G +H L       +   +PHP  T   N +++ YA+ G L LA   F  MP  NL + 
Sbjct: 27  VPGAVHCL-------VLRTLPHPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTR 79

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQ------------------------------------ 322
           N++++     +      +LF  M                                     
Sbjct: 80  NALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAV 139

Query: 323 VEGE--KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK---------------------- 358
           V+G   +P R T S ++  +S + D  LG Q+H  + +                      
Sbjct: 140 VDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGL 199

Query: 359 ----------TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
                      V+ +V + N +IT   RC  + EAR +FE M + ++ ++W  M+ G   
Sbjct: 200 IGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAM-VDRDSITWTTMVTGLTQ 258

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
           +G  +EAL++F+ MR+  V     TF S+L+AC      EEG+Q
Sbjct: 259 NGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQ 302


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 189/580 (32%), Positives = 284/580 (48%), Gaps = 96/580 (16%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G    A+ LFD +P+ D  T +T+IS +   G   EA+RL+ S+ AR +   N++     
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 103 Q----NGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
           +    +GD +   E  D           A+  G++ +  L                    
Sbjct: 140 KACGASGDASRVKEVHD----------DAIRCGMMSDAFLG------------------- 170

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG-- 216
               N LI  YG+   VE AR++FD + V            +++VSW SM  CY   G  
Sbjct: 171 ----NALIHAYGKCKCVEGARRVFDDLVV------------KDVVSWTSMSSCYVNCGLP 214

Query: 217 ---------------------------------DVVSAREIF-----EQMLERDTFSWNT 238
                                            D+ S R I        M+E + F  + 
Sbjct: 215 RLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIE-NVFVCSA 273

Query: 239 MISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL--- 295
           ++S Y   L +++A  +F  MPH D ++WN +++ Y      +  L  F +M  K +   
Sbjct: 274 LVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEAD 333

Query: 296 -VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
             +WN++I GC  N   E A+++  +MQ  G KP++ T SS L   S +  L +G ++H 
Sbjct: 334 EATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHC 393

Query: 355 MVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
            V +  +I D+    AL+ MYA+CG +  +R +F +M   K+VV+WN MI   A HG   
Sbjct: 394 YVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVF-DMICRKDVVAWNTMIIANAMHGNGR 452

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           E L LF+SM    + P  +TF  VLS C+H+ LVEEG Q F SM  ++ +EP   H+A +
Sbjct: 453 EVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACM 512

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           VD+  R GRL +A + I+ MP EP  + WGALLGACRV+ NVELA+++A  L ++EP N 
Sbjct: 513 VDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNP 572

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
             YV L+N+      W +A+E R+LMK   I K  G SW+
Sbjct: 573 GNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWL 612



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 175/418 (41%), Gaps = 102/418 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----------------------- 37
           +I  Y K + +  AR++FD++  +DVVSW  M S Y+                       
Sbjct: 173 LIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPN 232

Query: 38  SSRGSGFLEEARYLFDIMPER-------------DCVTWNTVISGYAKTGEMEEALRLFN 84
           S   S  L     L D+   R             +    + ++S YA+   +++A  +F+
Sbjct: 233 SVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFD 292

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            MP R+VVSWN +++ +  N +    +  F +M  +    D A+ +A++ G ++NG+ ++
Sbjct: 293 LMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEK 352

Query: 141 AARVLVKCGS---------------RCDGGEDL-----VRAY-------------NTLIV 167
           A  +L K  +                C   E L     V  Y               L+ 
Sbjct: 353 AVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVY 412

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y + G +  +R +FD I             ++++V+WN+MI+  A  G+      +FE 
Sbjct: 413 MYAKCGDLNLSRNVFDMI------------CRKDVVAWNTMIIANAMHGNGREVLLLFES 460

Query: 228 MLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIG 278
           ML+     ++ ++  ++SG  H   +EE   +F  M       PD   +  MV  +++ G
Sbjct: 461 MLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAG 520

Query: 279 NLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYE----GAIKLFIQMQVEGEKPDRH 331
            L  A +F +RMP +   S W +++  C   K+ E     A KLF   ++E   P  +
Sbjct: 521 RLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLF---EIEPNNPGNY 575


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 171/534 (32%), Positives = 277/534 (51%), Gaps = 32/534 (5%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D +  N +I  Y K GE++ A  +F  M  RNVVSW A++ GFL++GD    +     M 
Sbjct: 38  DTMLGNNLIDMYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMR 97

Query: 119 GRDSA-----SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
               A     +LSA +      G  D AA V +       G ++     ++L++ Y + G
Sbjct: 98  TASEAAPNEYTLSASLKACCVVG--DTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGG 155

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-- 231
           R+ +AR++FD        G G       I +WN+M+  YA AG    A  +F +M     
Sbjct: 156 RIGDARRVFD--------GAG---LGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEG 204

Query: 232 ----DTFSWNTMISGYIHVLDMEEASNLFVKMPHP------DTLTWNAMVSGYAQIGNLE 281
               D F++ +++     +    E + +   M         + +   A+V  Y +   L 
Sbjct: 205 QHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLP 264

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
           +A+  F+R+ +KN++ W +++ G         A++LF +    G +PD H  SS++ + +
Sbjct: 265 VAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLA 324

Query: 342 GIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
               +  G Q+H    K     DV   N+++ MY +CG   EA  +F EM+   NVVSW 
Sbjct: 325 DFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRA-PNVVSWT 383

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
            M+ G   HG   EA+ LF+ MR+  V P  +T++++LSAC+HAGLV+E R++F  +  +
Sbjct: 384 TMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRD 443

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
             + P+ EH+A +VD++GR G L +A DLI+ MP EP   VW  LL ACRVH +V + + 
Sbjct: 444 RTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGRE 503

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A + L+ ++ +N   YV L N+ A+ G W + ++VR  M+   +KK  G SWV+
Sbjct: 504 AGDVLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVE 557



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 117/505 (23%), Positives = 206/505 (40%), Gaps = 88/505 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG----FLEEARYLFDIMP 56
           +I  YVK  E+  A ++F  M  R+VVSW  ++ G++    +      L E R   +  P
Sbjct: 45  LIDMYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAP 104

Query: 57  ----------------------------------ERDCVTWNTVISGYAKTGEMEEALRL 82
                                             E D V  + V+  Y+K G + +A R+
Sbjct: 105 NEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLV-YSKGGRIGDARRV 163

Query: 83  FNSMP-ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS---------ASLSALVSGL 132
           F+       + +WNAM+SG+   G   +A+  F  M   +          ASL    SGL
Sbjct: 164 FDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGL 223

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG-----YGQRGRVEEARKLFDKIPV 187
              G   E A+V     +          A N ++ G     Y +  R+  A ++F+++  
Sbjct: 224 ---GATREGAQVHAAMTA-----SGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLE- 274

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL 247
                      ++N++ W ++++ +A+ G V  A E+F +         + ++S  + VL
Sbjct: 275 -----------RKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVL 323

Query: 248 D----MEEASNLF---VKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
                +E+   +    +K P   D    N++V  Y + G  + A   F+ M   N+VSW 
Sbjct: 324 ADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWT 383

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVT 357
           +M+ G   +     A+ LF +M+  G +PD  T+ ++LS  S  G+VD            
Sbjct: 384 TMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRD 443

Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH---GFATE 414
           +TV P       ++ +  R G + EAR +   M +   V  W  ++  C  H       E
Sbjct: 444 RTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGRE 503

Query: 415 ALELFKSMRSFKVLPTYITFISVLS 439
           A ++  +M     +  Y+T  +VL+
Sbjct: 504 AGDVLLAMDGDNPV-NYVTLSNVLA 527


>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 190/589 (32%), Positives = 301/589 (51%), Gaps = 84/589 (14%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMIS--- 99
           G L  A+ LFD + + +   W  ++  Y++ G  +E +R ++ M  + V+    +     
Sbjct: 72  GDLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVF 131

Query: 100 -----------GFLQNGDVA-NAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
                      G   + DV     EF       D    ++L+    ++G++    RV  +
Sbjct: 132 RACGQLLWLEVGIQVHKDVVICGCEF-------DLQVCNSLIDMYSKSGDVGSGRRVFDE 184

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
              R       V ++N++I GY   G +E + +L   + +   RG     F+ ++V+WN+
Sbjct: 185 MVER------DVLSWNSMISGYVCNGFLEFSVELLASMRI---RG-----FEPDMVTWNT 230

Query: 208 MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF-------VKMP 260
           ++  Y + G    A EIFEQ+ E +  S  T++SGY  + + E++  +F       V  P
Sbjct: 231 VMDAYCRMGLCDEAWEIFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFP 290

Query: 261 HPDTLT--------WNAMVSG---------------------------YAQIGNLELALD 285
             D+L+          A+V G                           Y +   ++ AL+
Sbjct: 291 DLDSLSSVLVSCRHLGALVCGQEIHGYGIRSVDSSSFYKSAGAALLTMYVKCKRIQDALN 350

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F+ M + ++V+WN+MI G    +    A++ F +MQ  G   ++ T S++L       D
Sbjct: 351 VFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPA----CD 406

Query: 346 LHLGMQIHQMVTKTVIPDV-PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           L  G Q+H  +TK     V P+ NALI MY++CG I  A  IF  M + +++VSWN MIG
Sbjct: 407 LKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNM-ISRDLVSWNTMIG 465

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           G   HG    AL+L + M    V P  +TF S LSAC+H+GLV+EG + F +M  ++G  
Sbjct: 466 GFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSACSHSGLVDEGMELFHTMTRDFGFT 525

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           P +EHF+ +VD++ R  RLEDA+  I+ MP +P K +W ALL ACR   NV +A++AAE 
Sbjct: 526 PGMEHFSCVVDLLARADRLEDAVGFIEKMPLKPSKHIWSALLAACRAQQNVSVAKLAAEQ 585

Query: 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           L ++EPE++  YV L N+YA  GRWDDA  VR LM+   + KP+GYSW+
Sbjct: 586 LFQLEPEHAGNYVTLSNIYARAGRWDDAVAVRKLMEDRGLVKPSGYSWI 634



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 203/474 (42%), Gaps = 91/474 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +I  Y K  ++   R++FDEM +RDV+SWN MISGY+    +GFLE +  L   M     
Sbjct: 165 LIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYVC---NGFLEFSVELLASMRIRGF 221

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D VTWNTV+  Y + G  +EA  +F  +   N++S   ++SG+ + G+   ++  F  
Sbjct: 222 EPDMVTWNTVMDAYCRMGLCDEAWEIFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFRE 281

Query: 117 M-------PGRDSAS--------LSALVSGLIQNGE----------LDEAARVLVKCGSR 151
           M       P  DS S        L ALV G   +G              A   L+    +
Sbjct: 282 MMSRRVAFPDLDSLSSVLVSCRHLGALVCGQEIHGYGIRSVDSSSFYKSAGAALLTMYVK 341

Query: 152 CDGGEDLVRAY-----------NTLIVGY---------------GQRGRVEEARKLFDKI 185
           C   +D +  +           N +I+G+                QR  +   +     +
Sbjct: 342 CKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTV 401

Query: 186 PVNCDRGEGNV--------RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
              CD   G           F   I  WN++I  Y+K G + +A  IF  M+ RD  SWN
Sbjct: 402 LPACDLKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWN 461

Query: 238 TMISGY-IHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           TMI G+ +H L  + A  L   M H    P+++T+ + +S  +  G ++  ++ F  M +
Sbjct: 462 TMIGGFGMHGLG-QFALQLLRDMSHSDVCPNSVTFTSALSACSHSGLVDEGMELFHTMTR 520

Query: 293 K-----NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
                  +  ++ ++         E A+    +M +   KP +H +S++L+      ++ 
Sbjct: 521 DFGFTPGMEHFSCVVDLLARADRLEDAVGFIEKMPL---KPSKHIWSALLAACRAQQNVS 577

Query: 348 LGM----QIHQMVTKTVIPDVPINNALITMYARCGA---IVEARIIFEEMKLLK 394
           +      Q+ Q+  +     V ++N    +YAR G     V  R + E+  L+K
Sbjct: 578 VAKLAAEQLFQLEPEHAGNYVTLSN----IYARAGRWDDAVAVRKLMEDRGLVK 627



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 148/307 (48%), Gaps = 16/307 (5%)

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
           HP  LT   +V  YA  G+L  A   F ++ Q N+ +W +++     N   +  ++ + +
Sbjct: 57  HPFMLT--KLVQMYADCGDLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSE 114

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGA 379
           M+++G  PD++ F  +      ++ L +G+Q+H+ +V      D+ + N+LI MY++ G 
Sbjct: 115 MKLKGVLPDKYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGD 174

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           +   R +F+EM + ++V+SWN+MI G   +GF   ++EL  SMR     P  +T+ +V+ 
Sbjct: 175 VGSGRRVFDEM-VERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPDMVTWNTVMD 233

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE--- 496
           A    GL +E  + F+ +      EP I    +LV    R G  E ++ + + M      
Sbjct: 234 AYCRMGLCDEAWEIFEQIK-----EPNIISLTTLVSGYSRIGNHEKSLGIFREMMSRRVA 288

Query: 497 -PDKAVWGALLGACRVHNNVELAQ-VAAEALMKVEPEN--STPYVLLYNMYADVGRWDDA 552
            PD     ++L +CR    +   Q +    +  V+  +   +    L  MY    R  DA
Sbjct: 289 FPDLDSLSSVLVSCRHLGALVCGQEIHGYGIRSVDSSSFYKSAGAALLTMYVKCKRIQDA 348

Query: 553 NEVRLLM 559
             V  LM
Sbjct: 349 LNVFELM 355



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 154/368 (41%), Gaps = 90/368 (24%)

Query: 208 MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPD 263
           ++  YA  GD+ SA+ +F+++ + + F+W  ++  Y      +E    + +M      PD
Sbjct: 64  LVQMYADCGDLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPD 123

Query: 264 ------------TLTW-----------------------NAMVSGYAQIGNLELALDFFK 288
                        L W                       N+++  Y++ G++      F 
Sbjct: 124 KYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFD 183

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            M +++++SWNSMI+G   N   E +++L   M++ G +PD                   
Sbjct: 184 EMVERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPD------------------- 224

Query: 349 GMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
                 MVT   + D          Y R G   EA  IFE++K   N++S   ++ G + 
Sbjct: 225 ------MVTWNTVMDA---------YCRMGLCDEAWEIFEQIK-EPNIISLTTLVSGYSR 268

Query: 409 HGFATEALELFKSMRSFKV-LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-- 465
            G   ++L +F+ M S +V  P   +  SVL +C H G +  G++     ++ YGI    
Sbjct: 269 IGNHEKSLGIFREMMSRRVAFPDLDSLSSVLVSCRHLGALVCGQE-----IHGYGIRSVD 323

Query: 466 ----RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
                    A+L+ +  +  R++DA+++ + M    D   W A++       ++E+  +A
Sbjct: 324 SSSFYKSAGAALLTMYVKCKRIQDALNVFELMD-RFDVVTWNAMILG---FVDLEMGHLA 379

Query: 522 AEALMKVE 529
            E   K++
Sbjct: 380 LECFSKMQ 387



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 11/243 (4%)

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLK 394
           +L + S    LH G Q+HQ +    +   P +   L+ MYA CG +  A+ +F+++    
Sbjct: 29  LLQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLGSAQALFDKLS-QP 87

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           NV +W A++G  + +G + E +  +  M+   VLP    F  V  AC     +E G Q  
Sbjct: 88  NVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLWLEVGIQVH 147

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           K +V   G E  ++   SL+D+  + G +     +   M  E D   W +++     +  
Sbjct: 148 KDVV-ICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEM-VERDVLSWNSMISGYVCNGF 205

Query: 515 VELA--QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPT---- 568
           +E +   +A+  +   EP+  T +  + + Y  +G  D+A E+   +K  NI   T    
Sbjct: 206 LEFSVELLASMRIRGFEPDMVT-WNTVMDAYCRMGLCDEAWEIFEQIKEPNIISLTTLVS 264

Query: 569 GYS 571
           GYS
Sbjct: 265 GYS 267


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 194/613 (31%), Positives = 314/613 (51%), Gaps = 62/613 (10%)

Query: 9   REMAKARKLFDEMPQRDVVSWNVMI-------------SGYISSRGSGFLEEARYLFDIM 55
           + + +A  LF  +P  D+  +NV+I             S Y   R S  LE   + +  +
Sbjct: 56  KAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFV 115

Query: 56  PE---------------------RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
                                   D    + +++ Y K   +  A ++F+ M  R+ V W
Sbjct: 116 ISGASSLGLGLLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLW 175

Query: 95  NAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEAARVLVKCGS 150
           N M+SG ++N     AI  F  M     G DS +++A++ G+ +  +L  A  + ++C +
Sbjct: 176 NTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDL--ALGMGIQCLA 233

Query: 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
              G          L   Y + G +E AR LF +I             + ++VS+N+MI 
Sbjct: 234 MKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIG------------QPDLVSYNAMIS 281

Query: 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV------LDMEEASNLFVK--MPHP 262
            Y    +  S+  +F+++L       ++ I G I V      L +    + F        
Sbjct: 282 GYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVS 341

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           ++    A+ + Y+++  +E A   F    +K+L SWN+MI+G   N   E AI LF +MQ
Sbjct: 342 NSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQ 401

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIV 381
               +P+  T +SILS  + +  L LG  +H ++ +     ++ ++ ALI MYA+CG+I 
Sbjct: 402 KCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSIT 461

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
           EA+ +F  M   KN V+WNAMI G   HG+  EAL LF  M   +V PT +TF+SVL AC
Sbjct: 462 EAQRLFSMMPE-KNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYAC 520

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
           +HAGLV EG + F+SMV+++G EP  EH+A +VD++GR G L+ A+D I+ MP EP   V
Sbjct: 521 SHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPV 580

Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
           WGALLGAC +H +  LA++A++ L +++P+N   YVLL N+Y+    + +A  VR ++K 
Sbjct: 581 WGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKR 640

Query: 562 NNIKKPTGYSWVD 574
             + K  G + ++
Sbjct: 641 RKLAKTPGCTLIE 653



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 111/457 (24%), Positives = 173/457 (37%), Gaps = 157/457 (34%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +++ Y K   +A ARK+FD M +RD V WN M+SG +  + S F +EA  +F  M +   
Sbjct: 147 IVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLV--KNSCF-DEAILIFGDMVKGGI 203

Query: 59  --DCVTWNTVISG-----------------------------------YAKTGEMEEALR 81
             D  T   V+ G                                   Y+K GE+E A  
Sbjct: 204 GFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARL 263

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGE 137
           LF  +   ++VS+NAMISG+  N +  +++  F  +       +S+S+  L+      G 
Sbjct: 264 LFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGH 323

Query: 138 LD----------------------------------EAARVLVKCGSRCDGGEDLVRAYN 163
           L                                   E+AR+L       +  E  + ++N
Sbjct: 324 LHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFD-----ESSEKSLASWN 378

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV--------------------------- 196
            +I GY Q G  E+A  LF ++   C+     V                           
Sbjct: 379 AMISGYAQNGLTEKAISLFQEMQ-KCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINR 437

Query: 197 -RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY-IHVLDMEEASN 254
             F+ NI    ++I  YAK G +  A+ +F  M E++  +WN MISGY +H     EA N
Sbjct: 438 ESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYG-HEALN 496

Query: 255 LFVKMPH----PDTLT------------------------------------WNAMVSGY 274
           LF +M H    P  +T                                    +  MV   
Sbjct: 497 LFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLL 556

Query: 275 AQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKD 310
            + GNL+ ALDF ++MP +     W +++  C  +KD
Sbjct: 557 GRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKD 593


>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 202/629 (32%), Positives = 311/629 (49%), Gaps = 73/629 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +I+ Y K  E+  A ++FDEMP RD VSWN +IS + SS   G L+    L   M     
Sbjct: 34  LITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASS---GDLDTTWQLLGAMRRSTH 90

Query: 59  --DCVTWNTVISG-----------------------------------YAKTGEMEEALR 81
             D  T+ +++ G                                   YAK G +++   
Sbjct: 91  AFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSALLDMYAKCGRVDDGYV 150

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F SMP RN VSWN +++ + + GD   A      M       D  ++S L++ L+ N  
Sbjct: 151 VFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSPLLT-LLDNAM 209

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
             +    L  C     G E      N  I  Y +   +++A ++FD   V C        
Sbjct: 210 FYKLTMQL-HCKIVKHGLELFNTVCNATITAYSECCSLQDAERVFDG-AVLC-------- 259

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
             R++V+WNSM+  Y        A ++F  M     E D +++ T I G   V + +   
Sbjct: 260 --RDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTY-TGIVGACSVQEHKTCG 316

Query: 254 N----LFVKMPHPDTL-TWNAMVSGYAQIGN--LELALDFFKRMPQKNLVSWNSMIAGCE 306
                L +K    +++   NA++S Y +  +  +E AL  F  M  K+  +WNS++AG  
Sbjct: 317 KCLHGLVIKRGLDNSVPVSNALISMYIRFNDRCMEDALRIFFSMDLKDCCTWNSILAGYV 376

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVP 365
                E A++LF+QM+    + D +TFS+++   S +  L LG Q H +  K     +  
Sbjct: 377 QVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLGQQFHVLALKVGFDTNSY 436

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           + ++LI MY++CG I +AR  FE      N + WN++I G A HG    AL+LF  M+  
Sbjct: 437 VGSSLIFMYSKCGIIEDARKSFEATSK-DNAIVWNSIIFGYAQHGQGNIALDLFYMMKER 495

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
           KV   +ITF++VL+AC+H GLVEEG    +SM +++GI PR EH+A  +D+ GR G L+ 
Sbjct: 496 KVKLDHITFVAVLTACSHNGLVEEGCNFIESMESDFGIPPRQEHYACAIDLYGRAGHLKK 555

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A  L++ MPFEPD  V   LLGACR   ++ELA   A+ L+++EPE    YV+L  MY  
Sbjct: 556 ATALVETMPFEPDAMVLKTLLGACRFCGDIELASQIAKILLELEPEEHCTYVILSEMYGR 615

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
              W +   V  +M+   +KK  G+SW++
Sbjct: 616 FKMWGEKASVTRMMRERGVKKVPGWSWIE 644



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 228/467 (48%), Gaps = 39/467 (8%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM- 117
           D  T N +I+ YAK  E+  A ++F+ MP R+ VSWNA+IS F  +GD+    +    M 
Sbjct: 27  DPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDLDTTWQLLGAMR 86

Query: 118 ---PGRDSASLSALVSGLIQNGEL---DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
                 DS +  +++ G+   G+L    +   V++K G       + V + + L+  Y +
Sbjct: 87  RSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGL-----SENVFSGSALLDMYAK 141

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD------VVSAREIF 225
            GRV++   +F  +P            +RN VSWN+++  Y++ GD      V+S  E+ 
Sbjct: 142 CGRVDDGYVVFQSMP------------ERNYVSWNTLVASYSRVGDCDMAFWVLSCMELE 189

Query: 226 EQMLERDTFS--WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
              ++  T S     + +   + L M+    +            NA ++ Y++  +L+ A
Sbjct: 190 GVEIDDGTVSPLLTLLDNAMFYKLTMQLHCKIVKHGLELFNTVCNATITAYSECCSLQDA 249

Query: 284 LDFFK-RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
              F   +  ++LV+WNSM+     ++  + A K+F+ MQ  G +PD +T++ I+   S 
Sbjct: 250 ERVFDGAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGACSV 309

Query: 343 IVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCG--AIVEARIIFEEMKLLKNVVSW 399
                 G  +H +V K  + + VP++NALI+MY R     + +A  IF  M  LK+  +W
Sbjct: 310 QEHKTCGKCLHGLVIKRGLDNSVPVSNALISMYIRFNDRCMEDALRIFFSMD-LKDCCTW 368

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N+++ G    G + +AL LF  MR   +   + TF +V+ +C+    ++ G+Q F  +  
Sbjct: 369 NSILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLGQQ-FHVLAL 427

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           + G +      +SL+ +  + G +EDA    +    + +  VW +++
Sbjct: 428 KVGFDTNSYVGSSLIFMYSKCGIIEDARKSFEATS-KDNAIVWNSII 473



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 119/268 (44%), Gaps = 25/268 (9%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D  T N +++ YA+   L  A   F  MP ++ VSWN++I+   ++ D +   +L   M+
Sbjct: 27  DPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDLDTTWQLLGAMR 86

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIV 381
                 D  TF SIL   + +  L LG Q+H ++ K  + + V   +AL+ MYA+CG + 
Sbjct: 87  RSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSALLDMYAKCGRVD 146

Query: 382 EARIIFEEMKLLKNVVSWNAM------IGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +  ++F+ M   +N VSWN +      +G C    +    +EL         +   +T +
Sbjct: 147 DGYVVFQSMP-ERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSPLLTLL 205

Query: 436 S-----VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
                  L+   H  +V+ G + F ++ N            + +        L+DA  + 
Sbjct: 206 DNAMFYKLTMQLHCKIVKHGLELFNTVCN------------ATITAYSECCSLQDAERVF 253

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELA 518
            G     D   W ++LGA  +H   +LA
Sbjct: 254 DGAVLCRDLVTWNSMLGAYLMHEKEDLA 281



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 3/148 (2%)

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
           I D    N LIT YA+C  +  A  +F+EM   ++ VSWNA+I   AS G      +L  
Sbjct: 25  IADPYTANNLITSYAKCTELNSAHQVFDEMP-HRDTVSWNAIISAFASSGDLDTTWQLLG 83

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
           +MR         TF S+L   A+ G ++ G+Q   S++ + G+   +   ++L+D+  + 
Sbjct: 84  AMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQ-LHSVMLKVGLSENVFSGSALLDMYAKC 142

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           GR++D   + + MP E +   W  L+ +
Sbjct: 143 GRVDDGYVVFQSMP-ERNYVSWNTLVAS 169


>gi|302821224|ref|XP_002992276.1| hypothetical protein SELMODRAFT_135000 [Selaginella moellendorffii]
 gi|300139926|gb|EFJ06657.1| hypothetical protein SELMODRAFT_135000 [Selaginella moellendorffii]
          Length = 545

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 181/524 (34%), Positives = 274/524 (52%), Gaps = 36/524 (6%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +ISG+ +   +  A+ LFD M  RDVVSWN ++  Y  SR  G   EAR +F  MP  D 
Sbjct: 11  IISGFARNGHLENAKSLFDAMFDRDVVSWNSILGAY--SR-HGATSEAREVFGKMPATDG 67

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +W++++S +A T   +E   LF+ +P R ++SW +M+    ++G +      F R P  
Sbjct: 68  FSWSSMLSAFAHTASRDEVGELFDKLPVRELISWTSMLHSCARDGRLEEMQAVFWRFPCW 127

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR----GRVE 176
           D    + +++   + G L +A     +   R          +N L+  + +     G+VE
Sbjct: 128 DVICWNEVITACAREGHLSDALVAFNQMPGRSS------VTWNLLLQAFCRASQPDGQVE 181

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM---LERDT 233
           EAR++FD +              RN VSWNSM+  Y +AG V  A+ +F+ M    +RD 
Sbjct: 182 EARRVFDAM------------LHRNTVSWNSMVAGYVRAGRVAEAKLLFDAMPDTAKRDV 229

Query: 234 FSWNTMISGYIHVLD---MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRM 290
            SWNTM+  +    D   +E     F +MP     +WNAM+  YA  G  + A   F+RM
Sbjct: 230 VSWNTMLPAFTVTEDAAVLELVEECFRRMPFTSQASWNAMLHAYACGGVTQRAEQLFERM 289

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
           P+K+  SW+++ +    +   + A  +   M ++G KPD  ++ S L       DL  G 
Sbjct: 290 PEKDSASWSALASARLLSGKCQSAASVVGLMDLDGCKPDAVSYISALEACGMASDLAQGR 349

Query: 351 QIHQMVTKTVIPDV----PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
            +H  +     P +     +  AL++MY+RC A+ EA   F+ M   KN+VSW AM+   
Sbjct: 350 ILHAEIVAADDPALQDGGKVATALVSMYSRCAALGEAVAAFDGMSS-KNLVSWTAMVAAL 408

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
           A +GF++ A   F  M      P  I+FIS+LSAC HAG VE G  HF SMV +YGI+P 
Sbjct: 409 AQNGFSSLARLAFWRMELNGFTPDSISFISILSACNHAGSVELGWSHFVSMVGDYGIQPG 468

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
           ++H+A +VD++GR G LEDA +L+  MPF P      +LL ACR
Sbjct: 469 LDHYACVVDLLGRAGNLEDAHELMDAMPFIPGPDSRTSLLSACR 512



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 131/266 (49%), Gaps = 20/266 (7%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           + +S N +I  +A+ G + +A+ +F+ M +RD  SWN+++  Y       EA  +F KMP
Sbjct: 4   STLSCNRIISGFARNGHLENAKSLFDAMFDRDVVSWNSILGAYSRHGATSEAREVFGKMP 63

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             D  +W++M+S +A   + +   + F ++P + L+SW SM+  C  +   E    +F +
Sbjct: 64  ATDGFSWSSMLSAFAHTASRDEVGELFDKLPVRELISWTSMLHSCARDGRLEEMQAVFWR 123

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLG---MQIHQMVTKTVIPDVPINNALITMYARC 377
                   D   ++ +++  +   + HL    +  +QM  ++ +      N L+  + R 
Sbjct: 124 FPCW----DVICWNEVITACA--REGHLSDALVAFNQMPGRSSV----TWNLLLQAFCRA 173

Query: 378 ----GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM--RSFKVLPTY 431
               G + EAR +F+ M L +N VSWN+M+ G    G   EA  LF +M   + + + ++
Sbjct: 174 SQPDGQVEEARRVFDAM-LHRNTVSWNSMVAGYVRAGRVAEAKLLFDAMPDTAKRDVVSW 232

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSM 457
            T +   +    A ++E   + F+ M
Sbjct: 233 NTMLPAFTVTEDAAVLELVEECFRRM 258



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 129/314 (41%), Gaps = 46/314 (14%)

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           T S N +ISG+     +E A +LF  M   D ++WN+++  Y++ G    A + F +MP 
Sbjct: 5   TLSCNRIISGFARNGHLENAKSLFDAMFDRDVVSWNSILGAYSRHGATSEAREVFGKMPA 64

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
            +  SW+SM++        +   +LF ++ V                             
Sbjct: 65  TDGFSWSSMLSAFAHTASRDEVGELFDKLPVR---------------------------- 96

Query: 353 HQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
            ++++ T         +++   AR G + E + +F       +V+ WN +I  CA  G  
Sbjct: 97  -ELISWT---------SMLHSCARDGRLEEMQAVFWRFPCW-DVICWNEVITACAREGHL 145

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
           ++AL  F  M     +   +   +   A    G VEE R+ F +M++   +      + S
Sbjct: 146 SDALVAFNQMPGRSSVTWNLLLQAFCRASQPDGQVEEARRVFDAMLHRNTVS-----WNS 200

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAV--WGALLGACRVHNNVELAQVAAEALMKVEP 530
           +V    R GR+ +A  L   MP    + V  W  +L A  V  +  + ++  E   ++  
Sbjct: 201 MVAGYVRAGRVAEAKLLFDAMPDTAKRDVVSWNTMLPAFTVTEDAAVLELVEECFRRMPF 260

Query: 531 ENSTPYVLLYNMYA 544
            +   +  + + YA
Sbjct: 261 TSQASWNAMLHAYA 274


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 171/536 (31%), Positives = 289/536 (53%), Gaps = 40/536 (7%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM- 117
           D +  N +I  Y K G +  A  +F+ M  RNVVSW A++ G +QNG+   ++  F +M 
Sbjct: 6   DLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMG 65

Query: 118 -----PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY-NTLIVGYGQ 171
                P   + S +    GL+ NG LD   ++   C      G D+V    N++I  Y +
Sbjct: 66  LSGVKPNDFTFSTNLKACGLL-NG-LDIGRQIHDIC---VKTGFDMVNVVGNSIIDMYSK 120

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE- 230
            GR+ EA  +F+ +PV            RN++SWN+MI  Y  AG    A  +F++M E 
Sbjct: 121 CGRINEAACMFEVMPV------------RNLISWNAMIAGYTVAGFCEKALVLFQKMQEV 168

Query: 231 ---RDTFSWNTMISGYIHVLDMEEASNLFVKMP------HPDTLTWNAMVSGYAQIGNLE 281
               D F++ + +     +  ++E + +   +         +T    A++  Y + G L 
Sbjct: 169 GGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLF 228

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
           +A   F  + +K+++SW ++I G     +   +++LF Q++    + D    SS++ + +
Sbjct: 229 MARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFA 288

Query: 342 GIVDLHLGMQIHQMVTKTVIP---DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
               +  G Q+H    K  +P   D+ + N+++ MY +CG I EA  +F EM   +NV+S
Sbjct: 289 DFALVQQGKQMHAFAIK--VPSGVDISVCNSILDMYLKCGMINEAERLFSEMPA-RNVIS 345

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           W  MI G   HG   EA+ LF  M+     P  +T+++VL  C+H+GLVE+G+++F  + 
Sbjct: 346 WTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLC 405

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
           + +GI+ R+EH+A +VD++GR GRL++A +L+  MP E +  +W  LL ACRVH ++EL 
Sbjct: 406 SYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELG 465

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +     L++++ EN   YV++ N+YAD G W +   +R L+KS  +KK  G SWV+
Sbjct: 466 KEVGGILLRLDSENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVE 521



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 112/468 (23%), Positives = 206/468 (44%), Gaps = 78/468 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           +I  Y K   +  A  +FD M +R+VVSW  ++ G+I +                     
Sbjct: 13  LIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPN 72

Query: 40  --------RGSGF---LEEARYLFDIMPERDC----VTWNTVISGYAKTGEMEEALRLFN 84
                   +  G    L+  R + DI  +       V  N++I  Y+K G + EA  +F 
Sbjct: 73  DFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFE 132

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDE 140
            MP RN++SWNAMI+G+   G    A+  F +M       D  + ++ +      G + E
Sbjct: 133 VMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKE 192

Query: 141 AARV---LVKCGSRCDGGEDLVRAYNTLIVG-----YGQRGRVEEARKLFDKIPVNCDRG 192
             ++   L+  G         + + NT + G     Y + G++  AR++F  I       
Sbjct: 193 GNQIHAFLITGG--------FLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIE------ 238

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLD 248
                 +++++SW ++I+ YA+ G++  + E+F Q+ E     D F  ++M+  +     
Sbjct: 239 ------EKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFAL 292

Query: 249 MEEASNLF---VKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           +++   +    +K+P   D    N+++  Y + G +  A   F  MP +N++SW  MI G
Sbjct: 293 VQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITG 352

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL--SMSSGIVDLHLGMQIHQMVTKTVIP 362
              +   + AI+LF +MQ++  +PD  T+ ++L     SG+V+              +  
Sbjct: 353 YGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKA 412

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            V     ++ +  R G + EA+ + + M L  NV  W  ++  C  HG
Sbjct: 413 RVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHG 460



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 175/403 (43%), Gaps = 83/403 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           +I  Y K   + +A  +F+ MP R+++SWN MI+GY     +GF E+A  LF  M E   
Sbjct: 114 IIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTV---AGFCEKALVLFQKMQEVGG 170

Query: 58  -----------RDC----------------------VTWNTVISG-----YAKTGEMEEA 79
                      + C                       + NT ++G     Y K G++  A
Sbjct: 171 FLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMA 230

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVS----- 130
            R+F+ +  ++V+SW A+I G+ Q G++A ++E F ++       D   LS+++      
Sbjct: 231 RRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADF 290

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
            L+Q G+   A  + V  G         +   N+++  Y + G + EA +LF ++P    
Sbjct: 291 ALVQQGKQMHAFAIKVPSGVD-------ISVCNSILDMYLKCGMINEAERLFSEMPA--- 340

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHV 246
                    RN++SW  MI  Y K G    A  +F++M     E D  ++  ++ G  H 
Sbjct: 341 ---------RNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHS 391

Query: 247 LDMEEASNLFVKMPHPDTLT-----WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNS 300
             +E+    F ++     +      +  MV    + G L+ A +    MP + N+  W +
Sbjct: 392 GLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQT 451

Query: 301 MIAGCETNKDYE-GAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           +++ C  + D E G     I ++++ E P  +   S +   +G
Sbjct: 452 LLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADAG 494


>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
          Length = 788

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 190/617 (30%), Positives = 297/617 (48%), Gaps = 105/617 (17%)

Query: 59  DCVT--------WNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANA 110
           DCV         ++ ++S + K G++  A RLF+ MP R VVS+  M+   ++ G VA A
Sbjct: 140 DCVAADAASPFAYDFMVSEHVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEA 199

Query: 111 IEFFDRMPGRDSASLSALVSGLIQNGELDEAA----RVLVKCGSR------------CDG 154
           +E +++ P    A  +A +SG ++N EL   A    R ++ C  R            C G
Sbjct: 200 VELYEQCPSGSVAFFTATISGFVRN-ELHHNALGVFRKMLSCRVRPNGITIVCMIKACVG 258

Query: 155 G-------------------EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN------- 188
                               E  +   N+LI  Y + G    ARK+FD++ V        
Sbjct: 259 AGEFGLALSIVGLAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTA 318

Query: 189 -----CDRGE--GNVRF-----KRNIVSWNSMIMCYAKAGDVVSAREIFEQML------- 229
                 + G+  G  R      +RN VSW ++I  + + G+   A +++ QML       
Sbjct: 319 LLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPN 378

Query: 230 --------------------------------ERDTFSWNTMISGYIHVLDMEEASNLFV 257
                                             + F   ++I  Y       +A  +F 
Sbjct: 379 ISCFSSVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFD 438

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
            +P  + + WN++VSGY+  G +  A+  FK+MP +NL SWN++I+G   N+ +  A+K 
Sbjct: 439 TLPQKNIVCWNSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKS 498

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYAR 376
           F  M   G+ P   TFSS+L   + +  L  G   H    K  I + + I  AL  MYA+
Sbjct: 499 FNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAK 558

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
            G +  ++ +F +M   +N V+W AMI G A +GFA E++ LF+ M +  + P   TF++
Sbjct: 559 SGDLQSSKRMFYQMPE-RNDVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLA 617

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           +L AC+H GLVE+   +F  M    GI P+ +H+  +VD++ R GRL +A  L+   P +
Sbjct: 618 LLFACSHGGLVEQAIHYFDKM-QALGISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSK 676

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
            +   W ALL AC  + N E+A+ AA+ L ++  +N+  YVLL NMYA  GRW DA  +R
Sbjct: 677 SEANSWAALLSACNTYRNEEIAERAAKRLHELAKDNTAGYVLLSNMYASCGRWKDAARIR 736

Query: 557 LLMKSNNIKKPTGYSWV 573
           +LMK   +KK  G SWV
Sbjct: 737 VLMKGTTLKKDGGCSWV 753


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 187/583 (32%), Positives = 299/583 (51%), Gaps = 82/583 (14%)

Query: 32  MISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNV 91
           +++ Y +    G +  AR LFD +P+ D   +N++I  Y  +   +EAL L   M  R  
Sbjct: 47  ILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRR-- 104

Query: 92  VSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSR 151
                   G L N       EF      +  A + A    ++ +G       V+VK G  
Sbjct: 105 --------GILPN-------EFTLPFLLKACARVQAWEHVMVTHG-------VVVKLGFV 142

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
              G+  V   N L+  Y   G + ++R+ FD++              RN+VSWNSMI  
Sbjct: 143 ---GQVFVG--NALLHSYASAGSLGDSRRFFDEM------------VDRNVVSWNSMING 185

Query: 212 YAKAGDVVSAREIFEQM----LERDTFSW------------------------------- 236
           YA+AG+   A  +FE M    L  D F+                                
Sbjct: 186 YAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRID 245

Query: 237 ----NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
               N ++  Y    D+  A   F  MP  + ++W +M+   A+  +++ A D+F+++P+
Sbjct: 246 LILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPE 305

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K+++SWN+MI+       +  A+ L+ +M++ G  PD  T +++LS    + DL  G  I
Sbjct: 306 KSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMI 365

Query: 353 HQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H  +      P V + N+L+ MYARCG +  A  +F EM   KNV+SWNA+IG  A HG 
Sbjct: 366 HDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPS-KNVISWNAIIGALAMHGR 424

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
           A +AL  F+SM S    P  ITF+++LSAC H GL+E G+ +F++M + Y ++P +EH+A
Sbjct: 425 AQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYA 484

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            +VD++GR G+L  A+DLIK MP  PD  VWGALLGACR+H ++++ +   + L+++E  
Sbjct: 485 CMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGM 544

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +   +VL+ NM  +  +W+D   +R LM+   +KK  G S ++
Sbjct: 545 SGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIE 587



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 205/496 (41%), Gaps = 107/496 (21%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV------------ 61
           AR+LFD +P  D   +N +I  Y +S      +EA  L   M  R  +            
Sbjct: 63  ARQLFDRIPDPDRFVYNSLIRAYCNSHCP---QEALPLLRGMIRRGILPNEFTLPFLLKA 119

Query: 62  -----TW----------------------NTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
                 W                      N ++  YA  G + ++ R F+ M  RNVVSW
Sbjct: 120 CARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSW 179

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LVK 147
           N+MI+G+ Q G+   A   F+ M  +    D  +L +L+      G L+    V   L+ 
Sbjct: 180 NSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLV 239

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
            G R     DL+ A N L+  YG+ G +  A   FD +P             +N VSW S
Sbjct: 240 RGCRI----DLILA-NALVDMYGKCGDLLMAHTCFDMMPF------------KNAVSWTS 282

Query: 208 MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPD 263
           M+   AK   + +AR+ FEQ+ E+   SWN MIS Y+      EA +L+ +M      PD
Sbjct: 283 MLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPD 342

Query: 264 TLT-----------------------------------WNAMVSGYAQIGNLELALDFFK 288
             T                                   +N+++  YA+ G ++ A+  F 
Sbjct: 343 EFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFS 402

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            MP KN++SWN++I     +   + A+  F  M  +   PD  TF ++LS  +    L  
Sbjct: 403 EMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEA 462

Query: 349 GMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           G    Q +     V P V     ++ +  R G + +A  + ++M +  +VV W A++G C
Sbjct: 463 GQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGAC 522

Query: 407 ASHGFATEALELFKSM 422
             HG      ++ K +
Sbjct: 523 RIHGHIQIGKQVIKQL 538



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 162/405 (40%), Gaps = 92/405 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           ++  Y     +  +R+ FDEM  R+VVSWN MI+GY                        
Sbjct: 151 LLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLAD 210

Query: 37  --------ISSRGSGFLEEARYLFDIMPERDC----VTWNTVISGYAKTGEMEEALRLFN 84
                    +    G LE  + +   +  R C    +  N ++  Y K G++  A   F+
Sbjct: 211 EFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFD 270

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA--- 141
            MP +N VSW +M+    +   +  A ++F+++P +   S +A++S  +Q G   EA   
Sbjct: 271 MMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDL 330

Query: 142 ----------------ARVLVKCGSRCDGG-----EDLVR---------AYNTLIVGYGQ 171
                           A VL  CG   D        D +R          +N+L+  Y +
Sbjct: 331 YNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYAR 390

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G+V+ A  LF ++P             +N++SWN++I   A  G    A   F  M+  
Sbjct: 391 CGQVDTAISLFSEMP------------SKNVISWNAIIGALAMHGRAQDALMFFRSMVSD 438

Query: 232 ----DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLEL 282
               D  ++  ++S   H   +E     F  M H     P    +  MV    + G L  
Sbjct: 439 AFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAK 498

Query: 283 ALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQ-MQVEG 325
           A+D  K MP + ++V W +++  C  +   +   ++  Q +++EG
Sbjct: 499 AVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEG 543


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/338 (44%), Positives = 212/338 (62%), Gaps = 2/338 (0%)

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           N ++  Y    +M EA  LF KMP  D +TWN M++   + G+ E A D F RMP++N+ 
Sbjct: 167 NMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVR 226

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SW SMIAG       + AI LF +M+  G K +  T  ++L+  + +  L LGM+IH+  
Sbjct: 227 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 286

Query: 357 TKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            +     +V I+N LI MY +CG + EA  +FEEM+  + VVSW+AMIGG A HG A EA
Sbjct: 287 NRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEE-RTVVSWSAMIGGLAMHGRAEEA 345

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L LF  M    + P  +TFI +L AC+H GL+ EGR+ F SM  +YGI P+IEH+  +VD
Sbjct: 346 LRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVD 405

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++ R G L +A + I  MP +P+  VWGALLGACRVH NVE+A+ A + L++++P N   
Sbjct: 406 LLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGY 465

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           YV+L N+YA+ GRW+D   VR  MK   +KK  G+S +
Sbjct: 466 YVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSI 503



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 144/299 (48%), Gaps = 31/299 (10%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N+++  Y S    G + EAR LF+ MP+RD VTWN +I+   K G+ E A  LF+ MP R
Sbjct: 167 NMIVHLYASC---GEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPER 223

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVL 145
           NV SW +MI+G++Q G    AI  F +M       +  ++ A+++     G LD   R+ 
Sbjct: 224 NVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIH 283

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
               S   G +  VR  NTLI  Y + G +EEA K+F+++             +R +VSW
Sbjct: 284 EY--SNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME------------ERTVVSW 329

Query: 206 NSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           ++MI   A  G    A  +F  M    +E +  ++  ++    H+  + E    F  M  
Sbjct: 330 SAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTR 389

Query: 262 -----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGA 314
                P    +  MV   ++ G L  A +F   MP K N V W +++  C  +K+ E A
Sbjct: 390 DYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMA 448



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 135/318 (42%), Gaps = 68/318 (21%)

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
           V+   P+T  WN+ +   A+  +   A+  F R+ Q ++                     
Sbjct: 86  VEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVC-------------------- 125

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYA 375
                      PD  T SS+L     ++DL  G  +H +V K     ++ + N ++ +YA
Sbjct: 126 -----------PDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYA 174

Query: 376 RCGAIVEARIIFEEM-------------KLLK-----------------NVVSWNAMIGG 405
            CG + EAR++FE+M             +L+K                 NV SW +MI G
Sbjct: 175 SCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAG 234

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG-RQHFKSMVNEYGIE 464
               G A EA+ LF  M    V    +T ++VL+ACA  G ++ G R H  S  N +G +
Sbjct: 235 YVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS--NRHGFK 292

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE--LAQVAA 522
             +    +L+D+  + G LE+A  + + M  E     W A++G   +H   E  L   + 
Sbjct: 293 RNVRISNTLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMIGGLAMHGRAEEALRLFSD 351

Query: 523 EALMKVEPENSTPYVLLY 540
            + + +EP   T   LL+
Sbjct: 352 MSQVGIEPNGVTFIGLLH 369



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           MI+  +K+ +   A  LF  MP+R+V SW  MI+GY+     G  +EA +LF  M E   
Sbjct: 200 MIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQ---CGKAKEAIHLFAKMEEAGV 256

Query: 58  ------------------------------------RDCVTWNTVISGYAKTGEMEEALR 81
                                               R+    NT+I  Y K G +EEA +
Sbjct: 257 KCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACK 316

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGE 137
           +F  M  R VVSW+AMI G   +G    A+  F  M       +  +   L+      G 
Sbjct: 317 VFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGL 376

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           + E  R      +R  G    +  Y  ++    + G + EA +    +P+          
Sbjct: 377 ISEGRRFFASM-TRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPM---------- 425

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL 247
            K N V W +++       +V  A E  + +LE D  +      GY  VL
Sbjct: 426 -KPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLN-----DGYYVVL 469


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 173/521 (33%), Positives = 272/521 (52%), Gaps = 45/521 (8%)

Query: 58  RDCVTWNTVISGYAKTGE-MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           +D       +  YA +   ++ A  +F  +   +  SW  MI GF++  +   A+EF+  
Sbjct: 57  KDTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGL 116

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           M  R                EL++   + V                   +  YG R   +
Sbjct: 117 MRQRGV--------------ELNKFTFLFV-------------------LKAYGLRPSYQ 143

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           E R +  K+          V F  ++ + N++I  Y K G +  A  +F++M   +  +W
Sbjct: 144 EGRIVHGKLV--------KVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTW 195

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           NTMI+G     D E A  LF +MP  +  +WNA+V GY+++G++++A   F  MP++++V
Sbjct: 196 NTMITGCFGCGDTERARRLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVV 255

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SW SMI+    N     A++LF +M + G   D    +SILS  + I  L +G  IH  +
Sbjct: 256 SWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYM 315

Query: 357 TKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            ++ +  DV ++ AL+ MYA+CG I  A  +F  M   KN+ SWNAM+ G A HG    A
Sbjct: 316 KRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPR-KNLCSWNAMLSGLAIHGHGFAA 374

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           LELFK M S  V P  ITF++VLSAC+H G VEEG + F  M  E+ I P++EH+  +VD
Sbjct: 375 LELFKQMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVD 434

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           I+ R G + +A ++I+ MP EP+  +WGALL AC+VH    + +     + K+  E+   
Sbjct: 435 ILCRQGLINEAKEMIRTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGC 494

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNI-KKPTGYSWVDF 575
           YVLL N++A   +W++  + R +MK   + KK  GYS ++ 
Sbjct: 495 YVLLSNIFAAKSQWNEVEKTRKMMKQMGVEKKIPGYSSIEL 535



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 135/519 (26%), Positives = 217/519 (41%), Gaps = 107/519 (20%)

Query: 6   VKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER------- 58
           V  R +  A  +F  +   D  SW  MI G++ ++     E+A   + +M +R       
Sbjct: 71  VSARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNP---EKALEFYGLMRQRGVELNKF 127

Query: 59  --------------------------------DCVTWNTVISGYAKTGEMEEALRLFNSM 86
                                           D  T N +I  Y K G + +A  LF+ M
Sbjct: 128 TFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEM 187

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLV 146
           P  NVV+WN MI+G    GD   A   F  MP R+  S +A+V                 
Sbjct: 188 PNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNVGSWNAVVG---------------- 231

Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
                                GY + G V+ AR LFD +P            +R++VSW 
Sbjct: 232 ---------------------GYSKLGHVDIARSLFDLMP------------ERDVVSWG 258

Query: 207 SMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMIS--GYIHVLDMEEASNLFVKMP 260
           SMI  Y + G    A E+F++M+      D+    +++S    I  LDM    + ++K  
Sbjct: 259 SMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRS 318

Query: 261 --HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
               D     A+V  YA+ G ++ A   F  MP+KNL SWN+M++G   +     A++LF
Sbjct: 319 KLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELF 378

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNALITMYAR 376
            QM+  G  P+  TF ++LS  S I  +  G +    + K   + P V     ++ +  R
Sbjct: 379 KQMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCR 438

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF--KVLPTYITF 434
            G I EA+ +   M L  NVV W A++  C  HG+     ++   ++    +    Y+  
Sbjct: 439 QGLINEAKEMIRTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLL 498

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
            ++ +A +    VE+ R+  K M    G+E +I  ++S+
Sbjct: 499 SNIFAAKSQWNEVEKTRKMMKQM----GVEKKIPGYSSI 533



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 162/322 (50%), Gaps = 31/322 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y+K   +  A  LFDEMP  +VV+WN MI+G     G G  E AR LF  MPER+ 
Sbjct: 167 LIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCF---GCGDTERARRLFGEMPERNV 223

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
            +WN V+ GY+K G ++ A  LF+ MP R+VVSW +MIS ++QNG  A A+E F  M   
Sbjct: 224 GSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLA 283

Query: 118 -PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               DS  +++++S   Q G LD   R +     R     D V     L+  Y + G ++
Sbjct: 284 GVSADSIIITSILSACAQIGALD-MGRWIHAYMKRSKLRND-VFLDTALVDMYAKCGCID 341

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERD 232
            A  +F+ +P            ++N+ SWN+M+   A  G   +A E+F+QM    +  +
Sbjct: 342 TAFGVFNTMP------------RKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPN 389

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFF 287
             ++  ++S   H+  +EE    F +M       P    +  MV    + G +  A +  
Sbjct: 390 DITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMI 449

Query: 288 KRMP-QKNLVSWNSMIAGCETN 308
           + MP + N+V W +++  C+ +
Sbjct: 450 RTMPLEPNVVIWGALLNACKVH 471


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 195/653 (29%), Positives = 336/653 (51%), Gaps = 97/653 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           ++  Y K + + ++  +F  MPQ++ +SW+ +I+G + +    FL+    +F  M +   
Sbjct: 222 LLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCVQN---NFLDGGLKMFKEMQKVGV 278

Query: 58  ------------------------------------RDCVTWNTVISGYAKTGEMEEALR 81
                                               +D +     +  YAK   M++A R
Sbjct: 279 GVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQR 338

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGE 137
           LF+     N+ S+NAMI+G+ Q  +   A+  F ++     G D  SLS  +        
Sbjct: 339 LFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKG 398

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           L E  + L    ++ +   ++  A N  I  YG+   ++EA ++FD++            
Sbjct: 399 LSEGLQ-LHGLATKSNFSRNICVA-NAFIDMYGKCEALDEACRVFDEMG----------- 445

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISG----------- 242
            +++ VSWN++I  + +  +      I   ML    E D +++ +++             
Sbjct: 446 -RKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAGDSLNHGME 504

Query: 243 -YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN------------------LELA 283
            +  ++ +  ASN ++     D  +   M+    +I N                  +E  
Sbjct: 505 IHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEP 564

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
                R  Q+ +VSWN++I+G    K  E A + F +M   G  PD+ T+S++L   + +
Sbjct: 565 KGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANL 624

Query: 344 VDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             + LG QIH  V K  +  DV I + L+ MY++CG + ++R++FE+  + ++ V+WNAM
Sbjct: 625 ASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPI-RDFVTWNAM 683

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I G A HG   EA++LF+SM    ++P + TF+S+L ACAH GLVE G  +F  M  EYG
Sbjct: 684 ICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERGLDYFHMMKKEYG 743

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN-NVELAQVA 521
           ++PR+EH++++VDI+G+ G +E A++LI+ MPFE D  +W  LL AC+++  NVE A+VA
Sbjct: 744 LDPRLEHYSNMVDILGKSGEVEKALELIQEMPFEADDVIWRTLLSACKINRNNVEAAEVA 803

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A AL++++P++S+ Y+LL N+YAD G WD A+E+R  M+S+ +KK  G SWV+
Sbjct: 804 ANALLRLDPQDSSTYILLSNIYADAGMWDKASELRTAMRSDKLKKEPGCSWVE 856



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 133/478 (27%), Positives = 229/478 (47%), Gaps = 49/478 (10%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N ++  YI+    G+   A  LFD MP RD V+WN +I GYA + +M  A   F  MP R
Sbjct: 88  NCLLQLYINCGNLGY---ATKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTR 144

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSAL--VSGLIQNGEL-DEA 141
           +VVSWN+M+SGFLQ G+   +++ F  M GR     D+ S S +  V  +++N +L  + 
Sbjct: 145 DVVSWNSMLSGFLQTGENLESVKVFIEM-GRSGVEFDNKSFSVILKVCSILENYKLGTQI 203

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             + ++ G   D     V + + L+  Y +  R++E+  +F  +P            ++N
Sbjct: 204 HGIALRMGYDTD-----VVSGSALLDMYAKCKRLDESFTVFYAMP------------QKN 246

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMISGYIHVLDMEEASNL-- 255
            +SW+++I    +   +    ++F++M +         + +++     + D+   + L  
Sbjct: 247 WISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHA 306

Query: 256 ------FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
                 FVK    D +   A +  YA+  N++ A   F      NL S+N+MI G     
Sbjct: 307 HALKSDFVK----DGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKD 362

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINN 368
           +   A+ LF ++       D  + S  L   + +  L  G+Q+H + TK+    ++ + N
Sbjct: 363 NGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVAN 422

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           A I MY +C A+ EA  +F+EM   K+ VSWNA+I     +   ++ L +  SM    + 
Sbjct: 423 AFIDMYGKCEALDEACRVFDEMG-RKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGME 481

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           P   TF SVL ACA   L      H  + + + G+       +SLVD+  + G +++A
Sbjct: 482 PDEYTFGSVLKACAGDSLNHGMEIH--TTIVKLGMASNPYIGSSLVDMYSKCGMIDEA 537



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 141/259 (54%), Gaps = 5/259 (1%)

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           F  N ++  YI+  ++  A+ LF  MP  D ++WNAM+ GYA   ++  A   F+ MP +
Sbjct: 85  FVSNCLLQLYINCGNLGYATKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTR 144

Query: 294 NLVSWNSMIAG-CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           ++VSWNSM++G  +T ++ E ++K+FI+M   G + D  +FS IL + S + +  LG QI
Sbjct: 145 DVVSWNSMLSGFLQTGENLE-SVKVFIEMGRSGVEFDNKSFSVILKVCSILENYKLGTQI 203

Query: 353 HQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H +  +     DV   +AL+ MYA+C  + E+  +F  M   KN +SW+A+I GC  + F
Sbjct: 204 HGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMP-QKNWISWSAIIAGCVQNNF 262

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
               L++FK M+   V  +   + SVL +CA    +  G Q     +    ++  I   A
Sbjct: 263 LDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTA 322

Query: 472 SLVDIVGRHGRLEDAMDLI 490
           +L D+  +   ++DA  L 
Sbjct: 323 TL-DMYAKCNNMQDAQRLF 340



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 151/675 (22%), Positives = 259/675 (38%), Gaps = 181/675 (26%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y+    +  A KLFD MP RDVVSWN MI GY +S     +  A   F++MP RD 
Sbjct: 90  LLQLYINCGNLGYATKLFDGMPLRDVVSWNAMIFGYAASND---MVRASLCFEMMPTRDV 146

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR------------------------------- 89
           V+WN+++SG+ +TGE  E++++F  M                                  
Sbjct: 147 VSWNSMLSGFLQTGENLESVKVFIEMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGI 206

Query: 90  --------NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                   +VVS +A++  + +   +  +   F  MP ++  S SA+++G +QN  LD  
Sbjct: 207 ALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGG 266

Query: 142 -------------------ARVLVKCGS-------------------------------- 150
                              A VL  C +                                
Sbjct: 267 LKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDM 326

Query: 151 --RCDGGEDLVR-----------AYNTLIVGYGQRGRVEEA----RKL------FDKIPV 187
             +C+  +D  R           +YN +I GY Q+     A    RKL      FD+I +
Sbjct: 327 YAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISL 386

Query: 188 N-----CDRGEG------------NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
           +     C   +G               F RNI   N+ I  Y K   +  A  +F++M  
Sbjct: 387 SGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGR 446

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDF 286
           +D  SWN +I+ +    +  +  N+ V M      PD  T+ +++   A           
Sbjct: 447 KDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAG---------- 496

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
                       +S+  G E    +   +KL       G   + +  SS++ M S    +
Sbjct: 497 ------------DSLNHGMEI---HTTIVKL-------GMASNPYIGSSLVDMYSKCGMI 534

Query: 347 HLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
               +IH  +       + I ++    Y+     +E     ++ ++ + +VSWNA+I G 
Sbjct: 535 DEAEKIHNKIF------IGIGDS--NTYSEHPETIEEPKGIQDRRVQEMIVSWNAIISGY 586

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
                + +A   F  M    + P   T+ +VL  CA+   +  G+Q   + V +  ++  
Sbjct: 587 VMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANLASIGLGKQ-IHAHVIKKELQYD 645

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA-- 524
           +   ++LVD+  + G L D+  + +  P   D   W A++     H   E A    E+  
Sbjct: 646 VYICSTLVDMYSKCGNLHDSRLMFEKAPIR-DFVTWNAMICGYAHHGMGEEAIKLFESMV 704

Query: 525 LMKVEPENSTPYVLL 539
           LM + P ++T   LL
Sbjct: 705 LMNIMPNHATFVSLL 719


>gi|226496045|ref|NP_001146017.1| uncharacterized protein LOC100279548 [Zea mays]
 gi|219885333|gb|ACL53041.1| unknown [Zea mays]
 gi|414872421|tpg|DAA50978.1| TPA: hypothetical protein ZEAMMB73_118572 [Zea mays]
          Length = 528

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/404 (38%), Positives = 238/404 (58%), Gaps = 16/404 (3%)

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           G +  AR +F+ +P             R++VSWNSM+   AKAG +  A E+F+QM E +
Sbjct: 135 GDIPAARAMFEAMPA------------RDVVSWNSMVAGLAKAGHLDEAIEMFDQMPETN 182

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
             SWN ++SG++    + +A  LF +MP  + ++W  M+SGYA+ G+++ A + F RM  
Sbjct: 183 VASWNALVSGFMAQGHLAQAQELFERMPTRNNVSWITMISGYAKAGDVQAAANLFDRMGS 242

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG--EKPDRHTFSSILSMSSGIVDLHLGM 350
           K+L +WN+MI+    N     A+ +F +M        P+  TFSS++S  S + DL  G+
Sbjct: 243 KDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVVPNEKTFSSVISACSQLGDLRFGL 302

Query: 351 QIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            +   +    +  D  +  AL+ +Y + G +  A  +F  ++  ++VVS++AMI GC  H
Sbjct: 303 WVENFMGYVGVDLDDHLRTALVDLYTKSGRMDRAFDLFRGLRS-RDVVSYSAMIVGCGMH 361

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G   EA+ LFK M   ++ P  +TF+ +LSA +HAGL+EE R  F SM + Y I P +EH
Sbjct: 362 GKLNEAVGLFKEMSKARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMTSRYRINPSMEH 421

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           +  +VDI+GR G+LE+A  L+  +P  PD +VWGALL ACR+HNN+EL +V A    ++E
Sbjct: 422 YTIMVDILGRCGKLEEAFQLVMQIPVCPDASVWGALLLACRLHNNIELGEVVASKCFELE 481

Query: 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           P+ S  Y+LL N+YA   +WD    +R +M    + K  G SWV
Sbjct: 482 PQESGYYILLGNIYAQAKKWDKVKGLRKMMAERGLSKTPGSSWV 525



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 167/334 (50%), Gaps = 47/334 (14%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G +  AR +F+ MP RD V+WN++++G AK G ++EA+ +F+ MP  NV SWNA++SGF
Sbjct: 134 AGDIPAARAMFEAMPARDVVSWNSMVAGLAKAGHLDEAIEMFDQMPETNVASWNALVSGF 193

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
           +  G +A A E F+RMP R++ S   ++SG  + G++  AA +  + GS+     DL  A
Sbjct: 194 MAQGHLAQAQELFERMPTRNNVSWITMISGYAKAGDVQAAANLFDRMGSK-----DLY-A 247

Query: 162 YNTLIVGYGQRGRVEEARKLFDK--------IP--------VNCDRGEGNVRFK---RNI 202
           +N +I  Y Q G   EA  +F++        +P        ++     G++RF     N 
Sbjct: 248 WNAMISCYAQNGCAREALGIFNRMLKPHIWVVPNEKTFSSVISACSQLGDLRFGLWVENF 307

Query: 203 VSW----------NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
           + +           +++  Y K+G +  A ++F  +  RD  S++ MI G      + EA
Sbjct: 308 MGYVGVDLDDHLRTALVDLYTKSGRMDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEA 367

Query: 253 SNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-----NLVSWNSMIA 303
             LF +M      P+ +T+  ++S Y+  G LE A   F  M  +     ++  +  M+ 
Sbjct: 368 VGLFKEMSKARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMTSRYRINPSMEHYTIMVD 427

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
                   E A +L +Q+ V    PD   + ++L
Sbjct: 428 ILGRCGKLEEAFQLVMQIPV---CPDASVWGALL 458



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 169/341 (49%), Gaps = 60/341 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++G  K   + +A ++FD+MP+ +V SWN ++SG+++    G L +A+ LF+ MP R+ 
Sbjct: 158 MVAGLAKAGHLDEAIEMFDQMPETNVASWNALVSGFMA---QGHLAQAQELFERMPTRNN 214

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--P 118
           V+W T+ISGYAK G+++ A  LF+ M ++++ +WNAMIS + QNG    A+  F+RM  P
Sbjct: 215 VSWITMISGYAKAGDVQAAANLFDRMGSKDLYAWNAMISCYAQNGCAREALGIFNRMLKP 274

Query: 119 G----RDSASLSALVSGLIQNG-----------------ELDEAARV----LVKCGSRCD 153
                 +  + S+++S   Q G                 +LD+  R     L     R D
Sbjct: 275 HIWVVPNEKTFSSVISACSQLGDLRFGLWVENFMGYVGVDLDDHLRTALVDLYTKSGRMD 334

Query: 154 GGEDLVR--------AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
              DL R        +Y+ +IVG G  G++ EA  LF ++           R   N V++
Sbjct: 335 RAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAVGLFKEM--------SKARIDPNAVTF 386

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD-------MEEASNLFVK 258
             ++  Y+ AG +  AR  F  M  R  +  N  +  Y  ++D       +EEA  L ++
Sbjct: 387 VGLLSAYSHAGLLEEARACFTSMTSR--YRINPSMEHYTIMVDILGRCGKLEEAFQLVMQ 444

Query: 259 MP-HPDTLTWNAMVSGYAQIGNLEL----ALDFFKRMPQKN 294
           +P  PD   W A++       N+EL    A   F+  PQ++
Sbjct: 445 IPVCPDASVWGALLLACRLHNNIELGEVVASKCFELEPQES 485



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 159/348 (45%), Gaps = 60/348 (17%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++  AR +F+ MP RDVVSWN M++G      +G L+EA  +FD MPE +  +WN ++SG
Sbjct: 136 DIPAARAMFEAMPARDVVSWNSMVAGLAK---AGHLDEAIEMFDQMPETNVASWNALVSG 192

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           +   G + +A  LF  MP RN VSW  MISG+ + GDV  A   FDRM  +D  + +A++
Sbjct: 193 FMAQGHLAQAQELFERMPTRNNVSWITMISGYAKAGDVQAAANLFDRMGSKDLYAWNAMI 252

Query: 130 SGLIQNGELDEA---------------------ARVLVKCGSRCD-------------GG 155
           S   QNG   EA                     + V+  C    D              G
Sbjct: 253 SCYAQNGCAREALGIFNRMLKPHIWVVPNEKTFSSVISACSQLGDLRFGLWVENFMGYVG 312

Query: 156 EDLVRAYNTLIVG-YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
            DL     T +V  Y + GR++ A  LF  +              R++VS+++MI+    
Sbjct: 313 VDLDDHLRTALVDLYTKSGRMDRAFDLFRGL------------RSRDVVSYSAMIVGCGM 360

Query: 215 AGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTL 265
            G +  A  +F++M    ++ +  ++  ++S Y H   +EEA   F  M      +P   
Sbjct: 361 HGKLNEAVGLFKEMSKARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMTSRYRINPSME 420

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYE 312
            +  MV    + G LE A     ++P     S W +++  C  + + E
Sbjct: 421 HYTIMVDILGRCGKLEEAFQLVMQIPVCPDASVWGALLLACRLHNNIE 468


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 179/544 (32%), Positives = 279/544 (51%), Gaps = 66/544 (12%)

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS--------LSALVSGL 132
           ++ N+    NV SWN  I G++++ +  NA+  +  M  + SA         L  + +G 
Sbjct: 109 KILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGF 168

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
             +   +E    +++ G   D     +  +N +I      G +  ARKLFD+  V     
Sbjct: 169 SLSWTANEILGHVIQLGFDSD-----LFVHNAIIHVLVSCGELLAARKLFDESCV----- 218

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS----------------- 235
                  R++VSWNS+I  Y + G    A +++ +M E +                    
Sbjct: 219 -------RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLEN 271

Query: 236 ----------------------WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
                                  N ++  YI   ++E A  LF  M     ++W  MV G
Sbjct: 272 LALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIG 331

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           YA+ G LE A+  F  MP+K++V WN++I G    K  + A+ LF +MQ     PD+ T 
Sbjct: 332 YAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITV 391

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
            + LS  S +  L +G+ +H  V K  +  +V +  AL+ MYA+CG I +A  +FEEM  
Sbjct: 392 VNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPG 451

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
            +N ++W A+I G A HG    A+  F  M S  ++P  ITFI VLSAC H GLV++GR 
Sbjct: 452 -RNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRD 510

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           +F  M ++YGI P+++H++ LVD++GR G LE+A +LI+ MPFEPD  VWGAL    R+H
Sbjct: 511 YFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIH 570

Query: 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
            NV + + AA  L++++P +   YVLL NMY D   W+ A +VR +M+   ++K  G S 
Sbjct: 571 GNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSS 630

Query: 573 VDFS 576
           ++ +
Sbjct: 631 IEMN 634



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 141/333 (42%), Gaps = 60/333 (18%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DIMPERDCVTW 63
           E+  ARKLFDE   RD+VSWN +I+GY+     G  +EA  L+      ++MP  D VT 
Sbjct: 205 ELLAARKLFDESCVRDLVSWNSIINGYVR---CGLADEAFDLYYKMGELNVMP--DEVTM 259

Query: 64  NTVISG-----------------------------------YAKTGEMEEALRLFNSMPA 88
             V+S                                    Y K   +E A  LF +M  
Sbjct: 260 IGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTK 319

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC 148
           + VVSW  M+ G+ + G + +A+  F+ MP +D    +AL+ G +Q     EA  +  + 
Sbjct: 320 KTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEM 379

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
            +      D +   N L     Q G ++    +   +  +            N+    ++
Sbjct: 380 QAS-SVAPDKITVVNCL-SACSQLGALDVGIWMHHYVDKH--------NLTMNVALGTAL 429

Query: 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDT 264
           +  YAK G++  A ++FE+M  R++ +W  +I G         A + F +M      PD 
Sbjct: 430 VDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDE 489

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           +T+  ++S     G ++   D+F +M  K  +S
Sbjct: 490 ITFIGVLSACCHGGLVDQGRDYFYQMTSKYGIS 522



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 121/301 (40%), Gaps = 87/301 (28%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y+K + +  A+ LF+ M ++ VVSW  M+ GY      G LE A  LF+ MPE+D V WN
Sbjct: 301 YIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAK---FGLLESAVRLFNEMPEKDVVLWN 357

Query: 65  TVISGYAKTGEMEEALRLFNSMPAR----------------------------------- 89
            +I G+ +    +EAL LF+ M A                                    
Sbjct: 358 ALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKH 417

Query: 90  ----NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR-- 143
               NV    A++  + + G++  AI+ F+ MPGR+S + +A++ GL  +G+   A    
Sbjct: 418 NLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYF 477

Query: 144 -----------------VLVKC--GSRCDGGEDL-------------VRAYNTLIVGYGQ 171
                            VL  C  G   D G D              ++ Y+ L+   G+
Sbjct: 478 SEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGR 537

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G +EEA +L   +P           F+ + V W ++       G+V        ++LE 
Sbjct: 538 AGFLEEAEELIRSMP-----------FEPDAVVWGALFFGSRIHGNVHMGERAASKLLEL 586

Query: 232 D 232
           D
Sbjct: 587 D 587


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 174/552 (31%), Positives = 296/552 (53%), Gaps = 57/552 (10%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L  A  +F+ +PE + + WN +  G+A + +   AL+L+  M +  ++         L++
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84

Query: 105 GDVANAIEFFDRMPGR--------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
              +   +   ++ G         D    ++L+S   QNG L++A +V  +   R     
Sbjct: 85  CAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHR----- 139

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D+V +Y  LI GY  RG +E A+K+FD+IP+            +++VSWN+MI  YA+ G
Sbjct: 140 DVV-SYTALITGYASRGYIESAQKMFDEIPI------------KDVVSWNAMISGYAETG 186

Query: 217 DVVSAREIFEQMLER----DTFSWNTMISG-----------YIH--VLDMEEASNLFVKM 259
           +   A E+F++M++     D  +  T++S             +H  + D    SNL +  
Sbjct: 187 NYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIV- 245

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
                   NA++  Y++ G +E A +  + +  K+++SWN++I G      Y+ A+ LF 
Sbjct: 246 --------NALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQ 297

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPIN-----NALITMY 374
           +M   GE P+  T  SIL   + +  + +G  IH  + K +   V  N      +LI MY
Sbjct: 298 EMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMY 357

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           A+CG I  A  + +     +++ +WNAMI G A HG A  A ++F  MR   + P  ITF
Sbjct: 358 AKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITF 417

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
           + +LSAC+H+G+++ GR  F+SM  +Y I P++EH+  ++D++G  G  ++A ++I  MP
Sbjct: 418 VGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMP 477

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANE 554
            EPD  +W +LL AC++H N+EL +  A+ L+K+EPEN   YVLL N+YA  G+W++  +
Sbjct: 478 MEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXK 537

Query: 555 VRLLMKSNNIKK 566
           +R L+    +KK
Sbjct: 538 IRTLLNDKGMKK 549



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 121/481 (25%), Positives = 216/481 (44%), Gaps = 95/481 (19%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G LE+A+ +FD    RD V++  +I+GYA  G +E A ++F+ +P ++VVSWNAMISG+
Sbjct: 123 NGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGY 182

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
            + G+   A+E F  M              +  N + DE+                    
Sbjct: 183 AETGNYKKALELFKEM--------------MKTNVKPDESTMA----------------- 211

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
             T++    Q G +E  R++   I    D G     F  N+   N++I  Y+K G+V +A
Sbjct: 212 --TVVSACAQSGSIELGRQVHSWIN---DHG-----FGSNLKIVNALIDLYSKCGEVETA 261

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQI 277
            E+ E +  +D  SWNT+I GY H+   +EA  LF +M      P+ +T  +++   A +
Sbjct: 262 CELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 321

Query: 278 GNLELA--------------------------LDFFKR------MPQ--------KNLVS 297
           G +++                           +D + +       PQ        ++L +
Sbjct: 322 GAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLST 381

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           WN+MI G   +     A  +F +M+  G +PD  TF  +LS  S    L LG  I + + 
Sbjct: 382 WNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMR 441

Query: 358 K--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
           +   + P +     +I +    G   EA  +   M +  + V W +++  C  HG     
Sbjct: 442 QDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHG----N 497

Query: 416 LELFKSM--RSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
           LEL +S   +  K+ P    +++ + +  A AG   E  +  ++++N+ G++ ++   +S
Sbjct: 498 LELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXK-IRTLLNDKGMKKKVPGCSS 556

Query: 473 L 473
           +
Sbjct: 557 I 557



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 152/316 (48%), Gaps = 18/316 (5%)

Query: 245 HVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ----KNLVSWNS 300
           H   +  A ++F  +P P+ L WN M  G+A   +   AL  +  M       N  ++  
Sbjct: 21  HFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPF 80

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           ++  C  +K ++   ++   +   G   D +  +S++SM +    L       ++  ++ 
Sbjct: 81  LLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLE---DAQKVFDRSS 137

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
             DV    ALIT YA  G I  A+ +F+E+  +K+VVSWNAMI G A  G   +ALELFK
Sbjct: 138 HRDVVSYTALITGYASRGYIESAQKMFDEIP-IKDVVSWNAMISGYAETGNYKKALELFK 196

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
            M    V P   T  +V+SACA +G +E GRQ   S +N++G    ++   +L+D+  + 
Sbjct: 197 EMMKTNVKPDESTMATVVSACAQSGSIELGRQ-VHSWINDHGFGSNLKIVNALIDLYSKC 255

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV--ELAQVAAEALMKVEPENSTPYVL 538
           G +E A +L++G+    D   W  L+G    H N+  E   +  E L   E  N    + 
Sbjct: 256 GEVETACELLEGLS-NKDVISWNTLIGG-YTHMNLYKEALLLFQEMLRSGETPNDVTMLS 313

Query: 539 LYNMYA-----DVGRW 549
           +    A     D+GRW
Sbjct: 314 ILPACAHLGAIDIGRW 329



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 168/398 (42%), Gaps = 70/398 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           +I+GY  R  +  A+K+FDE+P +DVVSWN MISGY     +G  ++A  LF      ++
Sbjct: 147 LITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAE---TGNYKKALELFKEMMKTNV 203

Query: 55  MPE--------------------RDCVTW-------------NTVISGYAKTGEMEEALR 81
            P+                    R   +W             N +I  Y+K GE+E A  
Sbjct: 204 KPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACE 263

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGE 137
           L   +  ++V+SWN +I G+        A+  F  M       +  ++ +++      G 
Sbjct: 264 LLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 323

Query: 138 LDEAARVLVKCGSRCDG--GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           +D    + V    +  G    +      +LI  Y + G ++ A ++ D           +
Sbjct: 324 IDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSD-----------S 372

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEE 251
             F R++ +WN+MI  +A  G   +A +IF +M    +E D  ++  ++S   H   ++ 
Sbjct: 373 SAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDL 432

Query: 252 ASNLFVKMPHPDTLT-----WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGC 305
             N+F  M     +T     +  M+      G  + A +    MP + + V W S++  C
Sbjct: 433 GRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKAC 492

Query: 306 ETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMSSG 342
           + + + E       ++ ++E E P  +   S +  ++G
Sbjct: 493 KIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAG 530


>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
          Length = 632

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/418 (37%), Positives = 243/418 (58%), Gaps = 15/418 (3%)

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           V ++N+++  Y   G    A  LF+ +P            +RN+VSWN+++  +A+ GD+
Sbjct: 181 VVSWNSIVGVYMSSGDATGAMGLFEAMP------------ERNVVSWNTVVAGFARTGDM 228

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
           V+AR +F++M  R+  SWN MISGY    D+E A ++F +M   D ++W AMVS YA+IG
Sbjct: 229 VTARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIG 288

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSIL 337
           +L+ A + F  MP KNLVSWN+MI G   N  Y+ A++ F  M +EG  +PD  T  S++
Sbjct: 289 DLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVV 348

Query: 338 SMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
           S  + +  +     I   + K+     V + NALI M+A+CG +  A+ IF +M+  + +
Sbjct: 349 SACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKME-TRCI 407

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
           ++W  MI G A +G   EAL ++ +M    V      FI+ L+AC H GL++EG   F  
Sbjct: 408 ITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQEGWSIFNE 467

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE 516
           MV +Y I+PR+EH+  +VD++GR G L++A+  I+ MP EP   +W  LL +C  H N E
Sbjct: 468 MVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLSSCVAHGNAE 527

Query: 517 LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           L +  ++ + ++EP NS+  VL+ N  A  GRWD     R  M++  I+K  G S + 
Sbjct: 528 LIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIGARTSMRNWGIEKVPGSSLIQ 585



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 191/398 (47%), Gaps = 80/398 (20%)

Query: 15  RKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTG 74
           R++FDEM  +DVVSWN ++  Y+SS   G    A  LF+ MPER+ V+WNTV++G+A+TG
Sbjct: 170 RQVFDEMVDKDVVSWNSIVGVYMSS---GDATGAMGLFEAMPERNVVSWNTVVAGFARTG 226

Query: 75  EMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQ 134
           +M  A  +F+ MP+RN VSWN MISG+  +GDV  A   FDRM  +D  S +A+VS   +
Sbjct: 227 DMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAK 286

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI--------- 185
            G+LD A  +      +     +LV ++N +I GY    R +EA + F  +         
Sbjct: 287 IGDLDTAKELFDHMPVK-----NLV-SWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPD 340

Query: 186 ------PVNCDRGEGNVRFKRNIVSW-------------NSMIMCYAKAGDVVSAREIFE 226
                  V+     G+V +   I S+             N++I  +AK GDV  A+ IF 
Sbjct: 341 EATLVSVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFY 400

Query: 227 QMLERDTFSWNTMISGY-----------------------------------IHVLDMEE 251
           +M  R   +W TMISG+                                    H   ++E
Sbjct: 401 KMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQE 460

Query: 252 ASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGC 305
             ++F +M       P    +  +V    + GNL+ A+ F + MP + ++V W ++++ C
Sbjct: 461 GWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLSSC 520

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
             + + E  +  ++  ++   +P   ++  ++S  S +
Sbjct: 521 VAHGNAE--LIEYVSKKITELEPFNSSYQVLVSNCSAL 556


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 187/550 (34%), Positives = 284/550 (51%), Gaps = 59/550 (10%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----D 121
           VIS  A +  ++ AL +FN +P       N  +    ++ +    +  ++RM  +    D
Sbjct: 62  VISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVD 121

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S   L+  L +   L E   +           +  V+    L+  Y   GR+ EAR +
Sbjct: 122 RFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQ--TGLVRMYAACGRIAEARLM 179

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERD----- 232
           FDK+            F R++V+W+ MI  Y ++G    A  +FE+M    +E D     
Sbjct: 180 FDKM------------FHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLS 227

Query: 233 ----------TFSWNTMISGYIH----VLD----------------MEEASNLFVKMPHP 262
                       S+  MI  +I     V+D                M+ A NLF KM   
Sbjct: 228 TVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPK 287

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           + +   AMV+GY+++G +E A   F +M +K+LV W++MI+G   +   + A+ LF +MQ
Sbjct: 288 NLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQ 347

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIV 381
             G KPD+ T  S+++  + +  L     IH  V K      +PINNALI MYA+CG++ 
Sbjct: 348 SLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLE 407

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
            AR IF++M   KNV+SW  MI   A HG A  AL  F  M    + P  ITF+ VL AC
Sbjct: 408 RARRIFDKMPR-KNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYAC 466

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
           +HAGLVEEGR+ F SM+NE+ I P+  H+  +VD+ GR   L +A++L++ MP  P+  +
Sbjct: 467 SHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVII 526

Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
           WG+L+ ACRVH  +EL + AA+ L++++P++   +V L N+YA   RW+D  +VR LMK 
Sbjct: 527 WGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKH 586

Query: 562 NNIKKPTGYS 571
             I K  G S
Sbjct: 587 KGISKERGCS 596



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 167/396 (42%), Gaps = 101/396 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y     +A+AR +FD+M  RDVV+W++MI GY     SG   +A  LF+ M     
Sbjct: 163 LVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQ---SGLFNDALLLFEEMKNYNV 219

Query: 57  ERDCVTWNTVISG-----------------------------------YAKTGEMEEALR 81
           E D +  +TV+S                                    YA  G M+ AL 
Sbjct: 220 EPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALN 279

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN------ 135
           LF  M  +N+V+  AM++G+ + G + NA   F++M  +D    SA++SG  ++      
Sbjct: 280 LFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEA 339

Query: 136 -----------------------------GELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166
                                        G LD+A  + +       GG   +   N LI
Sbjct: 340 LNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPIN--NALI 397

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
             Y + G +E AR++FDK+P            ++N++SW  MI  +A  GD  SA   F 
Sbjct: 398 EMYAKCGSLERARRIFDKMP------------RKNVISWTCMISAFAMHGDAGSALRFFH 445

Query: 227 QM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQI 277
           QM    +E +  ++  ++    H   +EE   +F  M +     P  + +  MV  + + 
Sbjct: 446 QMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRA 505

Query: 278 GNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
             L  AL+  + MP   N++ W S++A C  + + E
Sbjct: 506 NLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIE 541


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/338 (44%), Positives = 212/338 (62%), Gaps = 2/338 (0%)

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           N ++  Y    +M EA  LF KMP  D +TWN M++   + G+ E A D F RMP++N+ 
Sbjct: 167 NMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVR 226

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SW SMIAG       + AI LF +M+  G K +  T  ++L+  + +  L LGM+IH+  
Sbjct: 227 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 286

Query: 357 TKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            +     +V I+N LI MY +CG + EA  +FEEM+  + VVSW+AMIGG A HG A EA
Sbjct: 287 NRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEE-RTVVSWSAMIGGLAMHGRAEEA 345

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           L LF  M    + P  +TFI +L AC+H GL+ EGR+ F SM  +YGI P+IEH+  +VD
Sbjct: 346 LRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVD 405

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++ R G L +A + I  MP +P+  VWGALLGACRVH NVE+A+ A + L++++P N   
Sbjct: 406 LLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGY 465

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           YV+L N+YA+ GRW+D   VR  MK   +KK  G+S +
Sbjct: 466 YVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSI 503



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 144/299 (48%), Gaps = 31/299 (10%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N+++  Y S    G + EAR LF+ MP+RD VTWN +I+   K G+ E A  LF+ MP R
Sbjct: 167 NMIVHLYASC---GEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPER 223

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVL 145
           NV SW +MI+G++Q G    AI  F +M       +  ++ A+++     G LD   R+ 
Sbjct: 224 NVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIH 283

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
               S   G +  VR  NTLI  Y + G +EEA K+F+++             +R +VSW
Sbjct: 284 EY--SNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME------------ERTVVSW 329

Query: 206 NSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           ++MI   A  G    A  +F  M    +E +  ++  ++    H+  + E    F  M  
Sbjct: 330 SAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTR 389

Query: 262 -----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGA 314
                P    +  MV   ++ G L  A +F   MP K N V W +++  C  +K+ E A
Sbjct: 390 DYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMA 448



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 135/318 (42%), Gaps = 68/318 (21%)

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
           V+   P+T  WN+ +   A+  +   A+  F R+ Q ++                     
Sbjct: 86  VEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVC-------------------- 125

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYA 375
                      PD  T SS+L     ++DL  G  +H +V K     ++ + N ++ +YA
Sbjct: 126 -----------PDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYA 174

Query: 376 RCGAIVEARIIFEEM-------------KLLK-----------------NVVSWNAMIGG 405
            CG + EAR++FE+M             +L+K                 NV SW +MI G
Sbjct: 175 SCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAG 234

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG-RQHFKSMVNEYGIE 464
               G A EA+ LF  M    V    +T ++VL+ACA  G ++ G R H  S  N +G +
Sbjct: 235 YVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS--NRHGFK 292

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE--LAQVAA 522
             +    +L+D+  + G LE+A  + + M  E     W A++G   +H   E  L   + 
Sbjct: 293 RNVRISNTLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMIGGLAMHGRAEEALRLFSD 351

Query: 523 EALMKVEPENSTPYVLLY 540
            + + +EP   T   LL+
Sbjct: 352 MSQVGIEPNGVTFIGLLH 369



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           MI+  +K+ +   A  LF  MP+R+V SW  MI+GY+     G  +EA +LF  M E   
Sbjct: 200 MIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQ---CGKAKEAIHLFAKMEEAGV 256

Query: 58  ------------------------------------RDCVTWNTVISGYAKTGEMEEALR 81
                                               R+    NT+I  Y K G +EEA +
Sbjct: 257 KCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACK 316

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGE 137
           +F  M  R VVSW+AMI G   +G    A+  F  M       +  +   L+      G 
Sbjct: 317 VFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGL 376

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           + E  R      +R  G    +  Y  ++    + G + EA +    +P+          
Sbjct: 377 ISEGRRFFASM-TRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPM---------- 425

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL 247
            K N V W +++       +V  A E  + +LE D  +      GY  VL
Sbjct: 426 -KPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLN-----DGYYVVL 469


>gi|347954456|gb|AEP33728.1| chlororespiratory reduction 21, partial [Brassica oleracea]
          Length = 643

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 184/583 (31%), Positives = 312/583 (53%), Gaps = 42/583 (7%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEA-RYLFD-----IMPERDCVTWNTVI 67
           ARK+FDE+P+R+VV+WN ++ GY+ +   G  EEA R + D     + P R  VT +T +
Sbjct: 38  ARKVFDEIPERNVVAWNALMVGYVQN---GMNEEAIRLMCDMREEGVEPTR--VTVSTCL 92

Query: 68  SGYAKTGEMEE-----ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS 122
           S  A  G +EE     AL + N +   N++   ++++ + + G +  A   FDRM G+D 
Sbjct: 93  SASANMGGVEEGKXSHALAVVNGLELDNILG-TSILNFYCKVGLIDYAEMVFDRMIGKDV 151

Query: 123 ASLSALVSGLIQNGELDEAARV--LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
            + + L+SG +Q G +++A R+  L++        E L     TL        R + + K
Sbjct: 152 VTWNLLISGYVQQGLVEDAIRMCQLMRL-------EKLKFDCVTLSTLMSTAARTQNS-K 203

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           L  ++   C R      F+ +IV  ++ +  YAK G +V A+++F+  +++D   WNT++
Sbjct: 204 LGKEVQCYCIRHS----FESDIVLASAAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLL 259

Query: 241 SGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK--- 293
           + Y       EA  LF +M      P+ +TWN ++    + G ++ A + F +M      
Sbjct: 260 AAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKEMFLQMQSSGIV 319

Query: 294 -NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
             +VSW +M+ G   N   E AI    +MQ  G +P+  + +  LS  + +  LH G  +
Sbjct: 320 PTIVSWTTMMNGLVXNGCSEEAIHYLRKMQESGMRPNVFSITVALSACANLASLHFGRSV 379

Query: 353 HQMVTKTVI--PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           H  + +  +    V I  +L+ MYA+CG I +A  +F   KL   +  +NAMI   A +G
Sbjct: 380 HGYIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKVFRR-KLFSELPLYNAMISAYALYG 438

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
              EA+ L+ S+    + P  ITF ++LSAC HAG + +  + F  MV+++G++P +EH+
Sbjct: 439 NVEEAMALYGSLEDMGIKPDNITFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLEHY 498

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
             +VD++   G  E A+ L++ MP+EPD  +  +LL  C   +  EL +  ++ L++ EP
Sbjct: 499 GLMVDLLASAGETEKALRLMEEMPYEPDARMIQSLLATCNKEHKTELVEYLSKQLLESEP 558

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +NS  YV + N YA  G WD+  ++R +MK+  +KK  G SW+
Sbjct: 559 DNSGNYVTISNAYAGEGSWDEVVKMREMMKAKGLKKQPGCSWI 601



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 207/416 (49%), Gaps = 28/416 (6%)

Query: 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
           G +D V   ++L   YG+ G +++ARK+FD+IP            +RN+V+WN++++ Y 
Sbjct: 14  GLDDCVFVASSLADMYGKCGVLDDARKVFDEIP------------ERNVVAWNALMVGYV 61

Query: 214 KAGDVVSAREIF----EQMLERDTFSWNTMISGYIHVLDMEEASN----LFVKMPHPDTL 265
           + G    A  +     E+ +E    + +T +S   ++  +EE         V     D +
Sbjct: 62  QNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKXSHALAVVNGLELDNI 121

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
              ++++ Y ++G ++ A   F RM  K++V+WN +I+G       E AI++   M++E 
Sbjct: 122 LGTSILNFYCKVGLIDYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCQLMRLEK 181

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEAR 384
            K D  T S+++S ++   +  LG ++    +  +   D+ + +A + MYA+CG+IV+A+
Sbjct: 182 LKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVLASAAVDMYAKCGSIVDAK 241

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F+   + K+++ WN ++   A  G + EAL LF  M+   V P  IT+  ++ +    
Sbjct: 242 KVFDS-TVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRN 300

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP---FEPDKAV 501
           G V+E ++ F  M    GI P I  + ++++ +  +G  E+A+  ++ M      P+   
Sbjct: 301 GQVDEAKEMFLQM-QSSGIVPTIVSWTTMMNGLVXNGCSEEAIHYLRKMQESGMRPNVFS 359

Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV--LLYNMYADVGRWDDANEV 555
               L AC    ++   +     +++    +S+  +   L +MYA  G    A +V
Sbjct: 360 ITVALSACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKV 415



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 149/305 (48%), Gaps = 12/305 (3%)

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           Y + G L+ A   F  +P++N+V+WN+++ G   N   E AI+L   M+ EG +P R T 
Sbjct: 29  YGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTV 88

Query: 334 SSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
           S+ LS S+ +  +  G   H + V   +  D  +  +++  Y + G I  A ++F+ M +
Sbjct: 89  STCLSASANMGGVEEGKXSHALAVVNGLELDNILGTSILNFYCKVGLIDYAEMVFDRM-I 147

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
            K+VV+WN +I G    G   +A+ + + MR  K+    +T  +++S  A     + G++
Sbjct: 148 GKDVVTWNLLISGYVQQGLVEDAIRMCQLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKE 207

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
             +     +  E  I   ++ VD+  + G + DA  +      + D  +W  LL A   +
Sbjct: 208 -VQCYCIRHSFESDIVLASAAVDMYAKCGSIVDAKKVFDS-TVQKDLILWNTLLAA---Y 262

Query: 513 NNVELAQVAAEALMKVEPENSTPYVLLYNM----YADVGRWDDANEVRLLMKSNNIKKPT 568
               L+  A     +++ E+  P V+ +N+        G+ D+A E+ L M+S+ I  PT
Sbjct: 263 AESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKEMFLQMQSSGI-VPT 321

Query: 569 GYSWV 573
             SW 
Sbjct: 322 IVSWT 326



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/414 (22%), Positives = 182/414 (43%), Gaps = 88/414 (21%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP----ERDC 60
           Y K   +  A  +FD M  +DVV+WN++ISGY+     G +E+A  +  +M     + DC
Sbjct: 130 YCKVGLIDYAEMVFDRMIGKDVVTWNLLISGYVQ---QGLVEDAIRMCQLMRLEKLKFDC 186

Query: 61  VTWNTVISG-----------------------------------YAKTGEMEEALRLFNS 85
           VT +T++S                                    YAK G + +A ++F+S
Sbjct: 187 VTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVLASAAVDMYAKCGSIVDAKKVFDS 246

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEA 141
              ++++ WN +++ + ++G    A+  F  M       +  + + ++  L++NG++DEA
Sbjct: 247 TVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEA 306

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA----RKLFDK----------IPV 187
             + ++  S   G    + ++ T++ G    G  EEA    RK+ +           + +
Sbjct: 307 KEMFLQMQS--SGIVPTIVSWTTMMNGLVXNGCSEEAIHYLRKMQESGMRPNVFSITVAL 364

Query: 188 NCDRGEGNVRFKRNIVSW--------------NSMIMCYAKAGDVVSAREIFEQMLERDT 233
           +      ++ F R++  +               S++  YAK GD+  A ++F + L  + 
Sbjct: 365 SACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKVFRRKLFSEL 424

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKR 289
             +N MIS Y    ++EEA  L+  +      PD +T+  ++S     G++  A++ F  
Sbjct: 425 PLYNAMISAYALYGNVEEAMALYGSLEDMGIKPDNITFTNILSACNHAGDINQAIEIFSD 484

Query: 290 MPQKN-----LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
           M  K+     L  +  M+    +  + E A++L  +M  E   PD     S+L+
Sbjct: 485 MVSKHGVKPCLEHYGLMVDLLASAGETEKALRLMEEMPYE---PDARMIQSLLA 535


>gi|347954458|gb|AEP33729.1| chlororespiratory reduction 21, partial [Brassica rapa]
          Length = 788

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 184/581 (31%), Positives = 310/581 (53%), Gaps = 38/581 (6%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEA-RYLFD-----IMPERDCVTWNTVI 67
           ARK+FDE+P+R+VV+WN ++ GY+ +   G  EEA R + D     + P R  VT +T +
Sbjct: 183 ARKVFDEIPERNVVAWNALMVGYVQN---GMNEEAIRLMCDMREEGVEPTR--VTVSTCL 237

Query: 68  SGYAKTGEMEE-----ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS 122
           S  A  G +EE     AL + N +   N++   ++++ + + G V  A   FDRM G+D 
Sbjct: 238 SASANMGGVEEGKQSHALAVVNGLELDNILG-TSVLNFYCKVGLVEYAEMVFDRMVGKDV 296

Query: 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
            + + L+SG +Q G +++A R+      +    E L     TL        R + + KL 
Sbjct: 297 VTWNLLISGYVQQGLVEDAIRM-----CKLMRLEKLKFDCVTLSTLMSTAARTQNS-KLG 350

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
            ++   C R      F+ +IV  ++ +  YAK G +V A+++F+  +++D   WNT+++ 
Sbjct: 351 KEVQCYCIRHS----FESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAA 406

Query: 243 YIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK----N 294
           Y       EA  LF +M      P+ +TWN ++    + G ++ A   F +M        
Sbjct: 407 YAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKKMFLQMQSSGIVPT 466

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           +VSW +M+ G   N   E AI    +MQ  G +P+  + +  LS  + +  LH G  +H 
Sbjct: 467 IVSWTTMMNGLVQNGCSEEAIHYLRKMQEYGMRPNVFSITVALSACANLASLHFGRSVHG 526

Query: 355 MVTKTVI--PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
            + +  +    V I  +L+ MYA+CG I +A  +F   KL   +  +NAMI   A +G  
Sbjct: 527 YIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKVFRR-KLFSELPLYNAMISAYALYGNV 585

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
            EA+ L++S+    + P  ITF ++LSAC HAG + +  + F  MV+++G++P +EH+  
Sbjct: 586 EEAMALYRSLDDMGIKPDNITFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLEHYGL 645

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           +VD++   G  E A+ L++ MP+EPD  +  +LL  C   +  EL +  ++ L++ EP+N
Sbjct: 646 MVDLLASAGETEKALRLMEEMPYEPDARMIQSLLATCNKEHKTELVEYLSKQLLESEPDN 705

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           S  YV + N YA  G WD+  ++R +MK+  +KK  G SW+
Sbjct: 706 SGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKQPGCSWI 746



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 128/506 (25%), Positives = 237/506 (46%), Gaps = 38/506 (7%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSA 123
           YAK   +E A  LF+ +  RNV SW A+I    + G V  A+  F  M      P     
Sbjct: 73  YAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRMGLVEGALMGFVEMLKDEIFPDNFVV 132

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
                  G +Q           V       G +D V   ++L   YG+ G +++ARK+FD
Sbjct: 133 PNVCKACGALQWRGFGRGVHGYVAKS----GLDDCVFVASSLADMYGKCGVLDDARKVFD 188

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF----EQMLERDTFSWNTM 239
           +IP            +RN+V+WN++++ Y + G    A  +     E+ +E    + +T 
Sbjct: 189 EIP------------ERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTC 236

Query: 240 ISGYIHVLDMEEASN----LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           +S   ++  +EE         V     D +   ++++ Y ++G +E A   F RM  K++
Sbjct: 237 LSASANMGGVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDV 296

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-Q 354
           V+WN +I+G       E AI++   M++E  K D  T S+++S ++   +  LG ++   
Sbjct: 297 VTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCY 356

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
            +  +   D+ + +  + MYA+CG+IV+A+ +F+   + K+++ WN ++   A  G + E
Sbjct: 357 CIRHSFESDIVLASTAVDMYAKCGSIVDAKKVFDS-TVQKDLILWNTLLAAYAESGLSGE 415

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           AL LF  M+   V P  IT+  ++ +    G V+E ++ F  M    GI P I  + +++
Sbjct: 416 ALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKKMFLQM-QSSGIVPTIVSWTTMM 474

Query: 475 DIVGRHGRLEDAMDLIKGMP---FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
           + + ++G  E+A+  ++ M      P+       L AC    ++   +     +++    
Sbjct: 475 NGLVQNGCSEEAIHYLRKMQEYGMRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLH 534

Query: 532 NSTPYV--LLYNMYADVGRWDDANEV 555
           +S+  +   L +MYA  G    A +V
Sbjct: 535 SSSVSIETSLVDMYAKCGDISKAEKV 560



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 125/515 (24%), Positives = 225/515 (43%), Gaps = 59/515 (11%)

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
            K GE++EAL L   M  RNV      I G +  G V            RD  +   + +
Sbjct: 2   CKNGEIKEALSLVTEMDFRNV-RIGPEIYGEILQGCVYE----------RDFHTGQQIHA 50

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
            +++NG+       +                   L++ Y +   +E A  LF K+ V   
Sbjct: 51  RILKNGDFYAKNEYI----------------ETKLVIFYAKCDALEIAEVLFSKLRV--- 91

Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI------SGYI 244
                    RN+ SW ++I    + G V  A   F +ML+ + F  N ++       G +
Sbjct: 92  ---------RNVFSWAAIIGVKCRMGLVEGALMGFVEMLKDEIFPDNFVVPNVCKACGAL 142

Query: 245 HVLDMEEASNLFVKMPHPDTLTW--NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
                    + +V     D   +  +++   Y + G L+ A   F  +P++N+V+WN+++
Sbjct: 143 QWRGFGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALM 202

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVI 361
            G   N   E AI+L   M+ EG +P R T S+ LS S+ +  +  G Q H + V   + 
Sbjct: 203 VGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKQSHALAVVNGLE 262

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
            D  +  +++  Y + G +  A ++F+ M + K+VV+WN +I G    G   +A+ + K 
Sbjct: 263 LDNILGTSVLNFYCKVGLVEYAEMVFDRM-VGKDVVTWNLLISGYVQQGLVEDAIRMCKL 321

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           MR  K+    +T  +++S  A     + G++  +     +  E  I   ++ VD+  + G
Sbjct: 322 MRLEKLKFDCVTLSTLMSTAARTQNSKLGKE-VQCYCIRHSFESDIVLASTAVDMYAKCG 380

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
            + DA  +      + D  +W  LL A   +    L+  A     +++ E+  P V+ +N
Sbjct: 381 SIVDAKKVFDS-TVQKDLILWNTLLAA---YAESGLSGEALRLFYEMQLESVPPNVITWN 436

Query: 542 M----YADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
           +        G+ D+A ++ L M+S+ I  PT  SW
Sbjct: 437 LIILSLLRNGQVDEAKKMFLQMQSSGI-VPTIVSW 470



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 184/414 (44%), Gaps = 88/414 (21%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP----ERDC 60
           Y K   +  A  +FD M  +DVV+WN++ISGY+     G +E+A  +  +M     + DC
Sbjct: 275 YCKVGLVEYAEMVFDRMVGKDVVTWNLLISGYVQ---QGLVEDAIRMCKLMRLEKLKFDC 331

Query: 61  VTWNTVISG-----------------------------------YAKTGEMEEALRLFNS 85
           VT +T++S                                    YAK G + +A ++F+S
Sbjct: 332 VTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGSIVDAKKVFDS 391

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEA 141
              ++++ WN +++ + ++G    A+  F  M       +  + + ++  L++NG++DEA
Sbjct: 392 TVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEA 451

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA----RKLFD----------KIPV 187
            ++ ++  S   G    + ++ T++ G  Q G  EEA    RK+ +           + +
Sbjct: 452 KKMFLQMQS--SGIVPTIVSWTTMMNGLVQNGCSEEAIHYLRKMQEYGMRPNVFSITVAL 509

Query: 188 NCDRGEGNVRFKRNIVSW--------------NSMIMCYAKAGDVVSAREIFEQMLERDT 233
           +      ++ F R++  +               S++  YAK GD+  A ++F + L  + 
Sbjct: 510 SACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKVFRRKLFSEL 569

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKR 289
             +N MIS Y    ++EEA  L+  +      PD +T+  ++S     G++  A++ F  
Sbjct: 570 PLYNAMISAYALYGNVEEAMALYRSLDDMGIKPDNITFTNILSACNHAGDINQAIEIFSD 629

Query: 290 MPQKN-----LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
           M  K+     L  +  M+    +  + E A++L  +M  E   PD     S+L+
Sbjct: 630 MVSKHGVKPCLEHYGLMVDLLASAGETEKALRLMEEMPYE---PDARMIQSLLA 680


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 201/635 (31%), Positives = 315/635 (49%), Gaps = 84/635 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +IS Y K   + +AR LFD+MP+RD VSWN MI+GY S RG    EEA  LF  M    C
Sbjct: 82  LISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGY-SQRG--LNEEACGLFCSMI-NSC 137

Query: 61  VTWNTVIS------------------------GYA--------------------KTGEM 76
             W  ++S                        GYA                    K G +
Sbjct: 138 ENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGIL 197

Query: 77  EEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVS 130
           + A   F+ +  +++V+WN MI+G+ QN     AIE F +M      P   +       S
Sbjct: 198 DMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKAS 257

Query: 131 GLIQNGELDEA--ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
             + +  +     A+VL K G   D     V     L+  Y +   +E+  + F ++   
Sbjct: 258 TAMSDSAVGRCFHAKVL-KLGCSMD-----VFVATALVDMYSKFYDIEDVERAFGEMS-- 309

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYI 244
                     KRN+VS+N++I  Y+  G    A  ++ Q+    +E D+F++  + S   
Sbjct: 310 ----------KRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCS 359

Query: 245 HVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
               + E + + V         D    N++V+ Y++ G  + AL+ F+ + + N V W  
Sbjct: 360 VSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAG 419

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           +I+G   N + E A+  F +M+   +K D  + SS++   S    +  G  +H  V K+ 
Sbjct: 420 IISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSG 479

Query: 361 IP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
           +   + + +A+I MY++CG + +A+ +F  M   KNVVSWN+MI G A +GF  EAL LF
Sbjct: 480 LDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMP-EKNVVSWNSMITGYAQNGFCKEALLLF 538

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           + M S  +LPT +TF+ +L AC+HAGLVEEGR  +  MV+ YGI P +EH   +VD++GR
Sbjct: 539 QEMTSSGILPTAVTFVGILFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGR 598

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
            G LE+A   +    F  +  +WG+LL AC VH N ++   AA+  + +EP  S+ Y  L
Sbjct: 599 AGYLEEAEAFLLSSSFSKEPGIWGSLLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTAL 658

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            N+YA    W + + +R LMK   ++K  G SW++
Sbjct: 659 SNIYASKELWSEVSRIRDLMKDMGVEKEPGCSWIE 693



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 207/440 (47%), Gaps = 38/440 (8%)

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEA 141
           M   NVV W + I+   + G V  A+  F +M       ++ + SA +S   Q+     A
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLA 60

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +   C     G  + +   + LI  Y +  R++EAR LFD +P            +R+
Sbjct: 61  TSL--HCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMP------------ERD 106

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV---- 257
            VSWNSMI  Y++ G    A  +F  M+     +W  ++S +     ++    L      
Sbjct: 107 DVSWNSMIAGYSQRGLNEEACGLFCSMI-NSCENWKLLVSDFTLATVLKACGGLGCSRIG 165

Query: 258 KMPH---------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           K  H          D     + V  Y + G L++A   F ++  K++V+WN+MI G   N
Sbjct: 166 KCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQN 225

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPIN 367
              E AI+LF QM++EG KP+  TF  +L  S+ + D  +G   H  V K     DV + 
Sbjct: 226 CYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVA 285

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
            AL+ MY++   I +    F EM   +N+VS+NA+I G +  G   EAL ++  ++S  +
Sbjct: 286 TALVDMYSKFYDIEDVERAFGEMS-KRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGM 344

Query: 428 LPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
            P   TF+ + S+C+ +  V EG Q H  S+  ++G++  +    S+V+   + G  + A
Sbjct: 345 EPDSFTFVGLFSSCSVSSTVAEGAQVHVHSV--KFGLDSDVSVGNSIVNFYSKCGFTDSA 402

Query: 487 MDLIKGMPFEPDKAVWGALL 506
           ++  + +   P+   W  ++
Sbjct: 403 LEAFESIN-RPNSVCWAGII 421


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 213/714 (29%), Positives = 333/714 (46%), Gaps = 141/714 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQ-----RDVVSWNVMISGYI--SSRGSGFLEEARY-LF 52
           +I+ Y K      A K+FD++P+     +DV  WN +++GY     +  G  +  R  LF
Sbjct: 91  LINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLF 150

Query: 53  DIMPER-------------------------------DCVTWNTVISGYAKTGEMEEALR 81
            + P+                                D    + +I  Y   G   +A R
Sbjct: 151 GVRPDAYSLCILLGASDGHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWR 210

Query: 82  LFNSMPAR-NVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNG 136
           LF  +  + NVV+WN MI GF +NG   N++E +      +    SAS ++ +S   Q  
Sbjct: 211 LFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGE 270

Query: 137 ELDEAARV---LVKCG---------------SRCDGGEDL-----------VRAYNTLIV 167
            +    +V   LVK G               S+C   ED               +N +I 
Sbjct: 271 FVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMIS 330

Query: 168 GYGQRGRVEEARKLFDK-----IPVNCDRGE---------GNVRFKR------------- 200
            Y   GR  +  K++ +     IP +              G+  F R             
Sbjct: 331 AYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQS 390

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG------YIHVLDMEEASN 254
           N+   ++++  Y+K G+   A  IF  +  RD  +W +MISG      Y+  L+   +  
Sbjct: 391 NVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMT 450

Query: 255 LFVKMP---------------------------------HPDTLTWNAMVSGYAQIGNLE 281
           ++ + P                                   D    +++V  Y++    +
Sbjct: 451 VYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPK 510

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
           ++ + F  MP KNLV+WNS+I+    N   + +I LF QM   G  PD  + +S+L   S
Sbjct: 511 MSGNVFSDMPLKNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVS 570

Query: 342 GIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +  L  G  +H  + +  IP D+ + NALI MY +CG +  A+ IF+ M L  N+V+WN
Sbjct: 571 SVAVLRKGKAVHGYLIRQRIPSDLQLENALIDMYIKCGFLKYAQHIFQNM-LQTNLVTWN 629

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
            MI GC SHG   +A+ LF  MRSF + P  ITFIS+L++C H G +EEG + F+ M  E
Sbjct: 630 IMIAGCGSHGDWLKAMSLFDEMRSFGIAPDDITFISLLTSCNHCGFIEEGLKLFQLMTVE 689

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           +GIEPR+EH+ ++VD++GR GRL+DA   +K +P EPD+++W +LL +CRVH+NVEL ++
Sbjct: 690 HGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNLPIEPDRSIWLSLLCSCRVHHNVELGKL 749

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           AA  L+ +EP   + YV L N+Y +    D A  +R  MK   +KK  G SW++
Sbjct: 750 AAHKLLDIEPSRGSNYVQLLNLYGENELQDRAANLRASMKEKGLKKTPGCSWIE 803



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 208/462 (45%), Gaps = 62/462 (13%)

Query: 96  AMISGFLQNGDVANAIEFFDRMP-----GRDSASLSALVSGLIQNGELDEAARVLVKC-- 148
           ++I+ + + G   NA++ FD++P     G+D    +++V+G  + G   E      +   
Sbjct: 90  SLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQL 149

Query: 149 -GSRCD--------GGEDLVRAYNTLIVGYGQR--------------------GRVEEAR 179
            G R D        G  D    Y   I GY  R                    GR  +A 
Sbjct: 150 FGVRPDAYSLCILLGASDGHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAW 209

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF----EQMLERDTFS 235
           +LF ++    D+G        N+V+WN MI  + + G   ++ E++     + ++  + S
Sbjct: 210 RLFKELE---DKG--------NVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSAS 258

Query: 236 WNTMIS----GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           + + +S    G      M+   +L       D     ++++ Y++   +E A + F ++ 
Sbjct: 259 FTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVS 318

Query: 292 QKNLVSWNSMIAGCETN-KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
            K    WN+MI+    N + Y+G +K++ QM+V    PD  T +++LS    +     G 
Sbjct: 319 VKKTELWNAMISAYVGNGRSYDG-LKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGR 377

Query: 351 QIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            IH ++V + +  +V + +AL+TMY++CG   +A  IF  +K  ++VV+W +MI G   +
Sbjct: 378 LIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIK-GRDVVAWGSMISGFCQN 436

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
               EALE + SM  +   P      SV+SAC     V  G      +  + G+E  +  
Sbjct: 437 RKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCT-IHGLAIKSGLEQDVFV 495

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA-CR 510
            +SLVD+  +    + + ++   MP + +   W +++   CR
Sbjct: 496 ASSLVDMYSKFNFPKMSGNVFSDMPLK-NLVAWNSIISCYCR 536



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 149/320 (46%), Gaps = 28/320 (8%)

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ-----KNLVSWNSMIAGCETNKDYEGAI 315
           + D     ++++ Y + G+   A+  F ++P+     +++  WNS++ G       +  I
Sbjct: 82  YSDPYITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGI 141

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM--QIHQMVTKTVIPDVP-INNALIT 372
             F +MQ+ G +PD ++   +L  S G    HLG   QIH    + V    P + + LI 
Sbjct: 142 AQFCRMQLFGVRPDAYSLCILLGASDG----HLGYAKQIHGYSVRKVFYGDPFLESGLIY 197

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY  CG  ++A  +F+E++   NVV+WN MIGG   +G    +LE++   ++  V     
Sbjct: 198 MYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSA 257

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           +F S LSAC     V  G Q    +V + G E       SL+ +  +   +EDA ++   
Sbjct: 258 SFTSTLSACCQGEFVSFGMQVHCDLV-KLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQ 316

Query: 493 MPFEPDKAVWGALLGA----------CRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           +  +  + +W A++ A           +++  +++ Q+  ++L      +S   V  Y  
Sbjct: 317 VSVKKTE-LWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSY-- 373

Query: 543 YADVGRWDDANEVRLLMKSN 562
             D GR   A  V+  ++SN
Sbjct: 374 --DFGRLIHAELVKRPIQSN 391


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 170/539 (31%), Positives = 287/539 (53%), Gaps = 68/539 (12%)

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQ 134
           A+ +F+++   N++ WN M  G   + D  +A++ +  M       DS +   L+    +
Sbjct: 42  AISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAK 101

Query: 135 NGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
           +    E  ++   ++K G   D     +  + +LI  Y Q GR+E+ARK+FD        
Sbjct: 102 SKIRKEGQQIHGHVLKLGFDLD-----IYVHTSLISMYAQNGRLEDARKVFD-------- 148

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEE 251
               +   R++VS+ ++I  Y   G + SA+++F+++  +D  SWN MISGY+   + +E
Sbjct: 149 ----ISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKE 204

Query: 252 ASNLFVKM-------PHPDTL--------------------TW-------------NAMV 271
           A  LF +M       P   T+                    +W             NA++
Sbjct: 205 ALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALI 264

Query: 272 SGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
             Y++ G +E A + F  +  K+++SWN++I G      Y+ A+ LF +M   GE P+  
Sbjct: 265 DLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 324

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKT---VIPDVP-INNALITMYARCGAIVEARIIF 387
           T  SIL   + +  + +G  IH  + K    V+ +V  +  +LI MYA+CG I  A+ +F
Sbjct: 325 TMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVF 384

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
           +     +++ +WNAMI G A HG A  A ++F  MR   + P  ITF+ +LSAC+H+G++
Sbjct: 385 DSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGML 444

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           + GR  F+SM   Y I P++EH+  ++D++G  G  ++A ++I  MP EPD  +W +LL 
Sbjct: 445 DLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLK 504

Query: 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
           AC++H N+EL +  A+ L+K+EP NS  YVLL N+YA  GRW++  ++R L+    +KK
Sbjct: 505 ACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKK 563



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 130/500 (26%), Positives = 224/500 (44%), Gaps = 102/500 (20%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+     +IS Y  +   G LE+AR +FDI   RD V++  +I+GY   G +E A +LF+
Sbjct: 123 DIYVHTSLISMYAQN---GRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFD 179

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            +P ++VVSWNAMISG+++ G+   A+E F  M              ++ N   DE+  V
Sbjct: 180 EIPGKDVVSWNAMISGYVETGNYKEALELFKEMM-------------MMTNVRPDESTMV 226

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
                              T++    Q   +E  R +   I    D G     F  N+  
Sbjct: 227 -------------------TVVSACAQSDSIELGRHVHSWIN---DHG-----FASNLKI 259

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----P 260
            N++I  Y+K G+V +A E+F+ +  +D  SWNT+I GY H+   +EA  LF +M     
Sbjct: 260 VNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 319

Query: 261 HPDTLT------------------W--------------------NAMVSGYAQIGNLEL 282
            P+ +T                  W                     +++  YA+ G+++ 
Sbjct: 320 TPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDA 379

Query: 283 ALDFF-KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
           A   F   M  ++L +WN+MI+G   +     A  +F +M++ G +PD  TF  +LS  S
Sbjct: 380 AQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACS 439

Query: 342 GIVDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
               L LG  I + +T+   + P +     +I +    G   EA  +   M +  + V W
Sbjct: 440 HSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIW 499

Query: 400 NAMIGGCASHGFATEALELFKSM--RSFKVLP----TYITFISVLSACAHAGLVEEGRQH 453
            +++  C  HG     LEL +S   +  K+ P    +Y+   ++ +A      V + R  
Sbjct: 500 CSLLKACKIHG----NLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIR-- 553

Query: 454 FKSMVNEYGIEPRIEHFASL 473
             +++N+ G++ ++   +S+
Sbjct: 554 --ALLNDKGMKKKVPGCSSI 571



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 199/462 (43%), Gaps = 75/462 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +IS Y +   +  ARK+FD    RDVVS+  +I+GY+S    G++E A+ LFD +P +D 
Sbjct: 130 LISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVS---RGYIESAQKLFDEIPGKDV 186

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM---------------------------PARNVVS 93
           V+WN +ISGY +TG  +EAL LF  M                             R+V S
Sbjct: 187 VSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHS 246

Query: 94  W-------------NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
           W             NA+I  + + G+V  A E FD +  +D  S + L+ G        E
Sbjct: 247 WINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKE 306

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A  +  +     +   D+     +++      G ++  R +   I         NV   +
Sbjct: 307 ALLLFQEMLRSGETPNDVTML--SILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQ 364

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFE-QMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
                 S+I  YAK GD+ +A+++F+  M  R   +WN MISG+        A ++F +M
Sbjct: 365 -----TSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRM 419

Query: 260 P----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ-----KNLVSWNSMIAGCETNKD 310
                 PD +T+  ++S  +  G L+L  + F+ M +       L  +  MI     +  
Sbjct: 420 RMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGL 479

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA- 369
           ++ A ++   M +E   PD   + S+L        +H  +++ +   K +I   P N+  
Sbjct: 480 FKEAEEMINTMPME---PDGVIWCSLLKA----CKIHGNLELGESFAKKLIKIEPGNSGS 532

Query: 370 ---LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
              L  +YA  G   E      +++ L N       + GC+S
Sbjct: 533 YVLLSNIYAAAGRWNEV----AKIRALLNDKGMKKKVPGCSS 570



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 155/376 (41%), Gaps = 80/376 (21%)

Query: 220 SAREIFEQMLERDTFSWNTMISGYI-------HVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           S R I  QM++    + N  +S  +       H      A ++F  +  P+ L WN M  
Sbjct: 3   SVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFR 62

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
           G+A                                + D   A+KL++ M   G  PD +T
Sbjct: 63  GHA-------------------------------LSSDPVSALKLYLVMISLGLLPDSYT 91

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFE--- 388
           F  +L   +       G QIH  V K     D+ ++ +LI+MYA+ G + +AR +F+   
Sbjct: 92  FPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISS 151

Query: 389 ----------------------EMKLL-----KNVVSWNAMIGGCASHGFATEALELFKS 421
                                   KL      K+VVSWNAMI G    G   EALELFK 
Sbjct: 152 HRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKE 211

Query: 422 MRSF-KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
           M     V P   T ++V+SACA +  +E GR H  S +N++G    ++   +L+D+  + 
Sbjct: 212 MMMMTNVRPDESTMVTVVSACAQSDSIELGR-HVHSWINDHGFASNLKIVNALIDLYSKF 270

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV--ELAQVAAEALMKVEPENSTPYVL 538
           G +E A +L  G+ +  D   W  L+G    H N+  E   +  E L   E  N    + 
Sbjct: 271 GEVETACELFDGL-WNKDVISWNTLIGG-YTHMNLYKEALLLFQEMLRSGETPNDVTMLS 328

Query: 539 LYNMYA-----DVGRW 549
           +    A     D+GRW
Sbjct: 329 ILPACAHLGAIDIGRW 344


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 179/562 (31%), Positives = 290/562 (51%), Gaps = 56/562 (9%)

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW----NAMISGFLQNGDVANAIEF 113
           RD      VI  YAKT  +    +L   +            N +++ + + G++ +A++ 
Sbjct: 3   RDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKL 62

Query: 114 FDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           FD MP R+  S +A++SGL QN +  EA R    CG R  G      A+++ I      G
Sbjct: 63  FDTMPQRNLVSWTAMISGLSQNSKFSEAIRTF--CGMRICGEVPTQFAFSSAIRACASLG 120

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
            +E  +++     +    G G+  F    V  N   M Y+K G +  A ++FE+M  +D 
Sbjct: 121 SIEMGKQMH---CLALKFGIGSELF----VGSNLEDM-YSKCGAMFDACKVFEEMPCKDE 172

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMP--------------------------------- 260
            SW  MI GY  + + EEA   F KM                                  
Sbjct: 173 VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSS 232

Query: 261 ------HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ-KNLVSWNSMIAGCETNKDYEG 313
                   D    NA+   Y++ G++E A + F    + +N+VS+  +I G    +  E 
Sbjct: 233 VVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 292

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALIT 372
            + +F++++ +G +P+  TFSS++   +    L  G Q+H  V K    + P +++ L+ 
Sbjct: 293 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 352

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY +CG + +A   F+E+      ++WN+++     HG   +A+++F+ M    V P  I
Sbjct: 353 MYGKCGLLEQAIQAFDEIGD-PTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAI 411

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TFIS+L+ C+HAGLVEEG  +F SM   YG+ P  EH++ ++D++GR GRL++A + I  
Sbjct: 412 TFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINR 471

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
           MPFEP+   W + LGACR+H + E+ ++AAE L+K+EP+NS   VLL N+YA+  +W+D 
Sbjct: 472 MPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDV 531

Query: 553 NEVRLLMKSNNIKKPTGYSWVD 574
             VR+ M+  N+KK  GYSWVD
Sbjct: 532 RSVRMRMRDGNVKKLPGYSWVD 553



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 120/465 (25%), Positives = 196/465 (42%), Gaps = 73/465 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDI-----M 55
           +++ Y K  E+  A KLFD MPQR++VSW  MISG   S+ S F E  R    +     +
Sbjct: 46  LVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGL--SQNSKFSEAIRTFCGMRICGEV 103

Query: 56  PE--------RDCVTWNTVISG-------------------------YAKTGEMEEALRL 82
           P         R C +  ++  G                         Y+K G M +A ++
Sbjct: 104 PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKV 163

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-SASLSALVSGLIQNGELDEA 141
           F  MP ++ VSW AMI G+ + G+   A+  F +M   + +     L S L   G L   
Sbjct: 164 FEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKAC 223

Query: 142 A------RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
                    +VK G   D     +   N L   Y + G +E A  +F  I   C      
Sbjct: 224 KFGRSVHSSVVKLGFESD-----IFVGNALTDMYSKAGDMESASNVFG-IDSEC------ 271

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIF----EQMLERDTFSWNTMISGYIHVLDMEE 251
               RN+VS+  +I  Y +   +     +F     Q +E + F+++++I    +   +E+
Sbjct: 272 ----RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQ 327

Query: 252 ASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
            + L  ++       D    + +V  Y + G LE A+  F  +     ++WNS+++    
Sbjct: 328 GTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQ 387

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVP 365
           +   + AIK+F +M   G KP+  TF S+L+  S  G+V+  L        T  V+P   
Sbjct: 388 HGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEE 447

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
             + +I +  R G + EA+     M    N   W + +G C  HG
Sbjct: 448 HYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHG 492


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 189/601 (31%), Positives = 306/601 (50%), Gaps = 91/601 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++S Y    ++ + R++FD M +++V  WN M+S Y      G  +E+  LF IM E+  
Sbjct: 140 LVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK---IGDFKESICLFKIMVEKG- 195

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
                 I G       E A  LF+ +  R+V+SWN+MISG++ NG     +E + +M   
Sbjct: 196 ------IEG----KRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYL 245

Query: 118 -PGRDSASLSALVSGLIQNGELD--EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
               D A++ +++ G   +G L   +A   L    +     E  +   NTL+  Y + G 
Sbjct: 246 GIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTF----ERRINFSNTLLDMYSKCGD 301

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG------------------ 216
           ++ A ++F+K+      GE      RN+VSW SMI  Y + G                  
Sbjct: 302 LDGALRVFEKM------GE------RNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVK 349

Query: 217 -DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
            DVV+   I        +      +  YI   +ME  SNLFV          NA++  Y 
Sbjct: 350 LDVVATTSILHACARSGSLDNGKDVHDYIKANNME--SNLFV---------CNALMDMYT 398

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFS 334
           + G+++ A   F  M  K+++SWN+MI                      GE KPD  T +
Sbjct: 399 KCGSMDGANSVFSTMVVKDIISWNTMI----------------------GELKPDSRTMA 436

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLL 393
            IL   + +  L  G +IH  + +     D  + NAL+ +Y +CG +  AR++F +M   
Sbjct: 437 CILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF-DMIPS 495

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           K++VSW  MI G   HG+  EA+  F  MR   + P  ++FIS+L AC+H+GL+E+G + 
Sbjct: 496 KDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRF 555

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
           F  M N++ IEP++EH+A +VD++ R G L  A + I+ +P  PD  +WGALL  CR+++
Sbjct: 556 FYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYH 615

Query: 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           ++ELA+  AE + ++EPEN+  YVLL N+YA+  +W++   +R  +    ++K  G SW+
Sbjct: 616 DIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWI 675

Query: 574 D 574
           +
Sbjct: 676 E 676



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 134/531 (25%), Positives = 223/531 (41%), Gaps = 132/531 (24%)

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA--ARVLV 146
           R V  +NA I  F Q G++ NA+E                   + Q  EL+    + VL 
Sbjct: 64  RQVTDYNAKILHFCQLGNLENAMELV----------------CMCQKSELETKTYSSVLQ 107

Query: 147 KCG---SRCDGGE--DLVRAYNT---------LIVGYGQRGRVEEARKLFDKIPVNCDRG 192
            C    S  DG +   ++++ N          L+  Y   G ++E R++FD +       
Sbjct: 108 LCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTME------ 161

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVV--------------------SAREIFEQMLERD 232
                 K+N+  WN M+  YAK GD                      SA E+F+++ +RD
Sbjct: 162 ------KKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRD 215

Query: 233 TFSWNTMISGYIHV-------------------LDMEEASNLFVKMPHPDTLTW------ 267
             SWN+MISGY+                     +D+    ++ V   +  TL+       
Sbjct: 216 VISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 268 --------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
                         N ++  Y++ G+L+ AL  F++M ++N+VSW SMIAG   +   +G
Sbjct: 276 LAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-TKTVIPDVPINNALIT 372
           AI+L  QM+ EG K D    +SIL   +    L  G  +H  +    +  ++ + NAL+ 
Sbjct: 336 AIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMD 395

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY +CG++  A  +F  M ++K+++SWN MIG                     ++ P   
Sbjct: 396 MYTKCGSMDGANSVFSTM-VVKDIISWNTMIG---------------------ELKPDSR 433

Query: 433 TFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           T   +L ACA    +E G++ H   + N Y  +  + +  +LVD+  + G L  A  L  
Sbjct: 434 TMACILPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDLYVKCGVLGLARLLFD 491

Query: 492 GMPFEPDKAVWGALLGACRVH--NNVELAQVAAEALMKVEPENSTPYVLLY 540
            +P   D   W  ++    +H   N  +A         +EP+  +   +LY
Sbjct: 492 MIP-SKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILY 541



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 139/332 (41%), Gaps = 62/332 (18%)

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
           R   + +  +N+ I       + E A++L    Q    + +  T+SS+L + +G   L  
Sbjct: 60  RTIDRQVTDYNAKILHFCQLGNLENAMELVCMCQ--KSELETKTYSSVLQLCAGSKSLTD 117

Query: 349 GMQIHQMV-TKTVIPDVPINNALITMYARCGAIVEARIIFEEM----------------- 390
           G ++H ++ +  V  D  +   L+++YA CG + E R +F+ M                 
Sbjct: 118 GKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK 177

Query: 391 --------------------------------KLL-KNVVSWNAMIGGCASHGFATEALE 417
                                           KL  ++V+SWN+MI G  S+G     LE
Sbjct: 178 IGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLE 237

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           ++K M    +     T ISVL  CA++G +  G+    S+  +   E RI    +L+D+ 
Sbjct: 238 IYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKA-VHSLAIKSTFERRINFSNTLLDMY 296

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC----RVHNNVELAQVAAEALMKVEPENS 533
            + G L+ A+ + + M  E +   W +++       R    + L Q   +  +K++   +
Sbjct: 297 SKCGDLDGALRVFEKMG-ERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVAT 355

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           T    + +  A  G  D+  +V   +K+NN++
Sbjct: 356 TS---ILHACARSGSLDNGKDVHDYIKANNME 384


>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Brachypodium distachyon]
          Length = 564

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 180/552 (32%), Positives = 290/552 (52%), Gaps = 78/552 (14%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
            T+I      G +  A  +F+ MP R+VV+W AM+SG+  NG  + A++ F RM      
Sbjct: 7   TTLIKSLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRM------ 60

Query: 124 SLSALVSGLIQNGELDEAARVLVKC-GSRCDGGED----------------------LVR 160
               L +G+  N E   ++ VL  C G   DGG +                      L+ 
Sbjct: 61  ----LAAGVGPN-EFTLSS-VLTACRGGAADGGCEPSSLHAVAVRRGVDHMPYVVNALIE 114

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
           AY +   G G    VEE+RKLFD +      G G     R   SW SM+  Y++ G   +
Sbjct: 115 AYASCEEGVG----VEESRKLFDAL------GSG-----RTAASWTSMVAGYSRWGQEQT 159

Query: 221 AREIFEQML----ERDTFSW-----------NTMISGYIHVLDMEEASNLFVKMPHPDTL 265
             ++F+ M+    E   F+            N  +   +HVL + +A N  + +      
Sbjct: 160 GLQLFQTMIQDGIELSPFTCSIALHACASIANLCVGQQLHVLCLRKAFNANLTVA----- 214

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
             N+++  Y    NL  A   F  +P++NLV+WN+MIA   +  ++  A++L  +M ++ 
Sbjct: 215 --NSLIDMYCSCANLLDARRLFDEIPERNLVTWNTMIAW-YSQCNHLMALQLLREMNLQ- 270

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEAR 384
             P+  T +SI S  +G+  L  G Q+H   + +    D+ + NAL+ MY++CG+I  A+
Sbjct: 271 --PNCFTLTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMCNALVDMYSKCGSIANAK 328

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F  M   K+ +SW +MI G   +G+A E+++LF SM    V P ++ F+ ++ AC H 
Sbjct: 329 KMFNMMDY-KDKLSWTSMITGYGMNGYANESIQLFTSMIHAGVHPDHVVFLGLICACNHG 387

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           GLV+EG   F+SM +EY ++P  E +  + +++ R GRL +A DLI  MPF PD+ VWGA
Sbjct: 388 GLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLARAGRLREAFDLIHRMPFAPDETVWGA 447

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           LLGAC++H NVEL ++AA  ++++ P+ +  YVLL N+YA   +W +  + R L++    
Sbjct: 448 LLGACKMHKNVELGRLAARKIIEINPDRAKTYVLLANIYAAGNKWGEYADTRRLLRGIGS 507

Query: 565 KKPTGYSWVDFS 576
           +K  G SW+D +
Sbjct: 508 RKEAGTSWIDVT 519



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 135/535 (25%), Positives = 217/535 (40%), Gaps = 104/535 (19%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISS--------------------------------RG 41
           AR +FDEMP RDVV+W  M+SGY S+                                RG
Sbjct: 22  ARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVGPNEFTLSSVLTACRG 81

Query: 42  S---GFLEEA-------RYLFDIMPERDCVTWNTVISGYAKTGE---MEEALRLFNSM-P 87
               G  E +       R   D MP       N +I  YA   E   +EE+ +LF+++  
Sbjct: 82  GAADGGCEPSSLHAVAVRRGVDHMP----YVVNALIEAYASCEEGVGVEESRKLFDALGS 137

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRM--------PGRDSASLSALVSGLIQNGELD 139
            R   SW +M++G+ + G     ++ F  M        P   S +L A  S  I N  + 
Sbjct: 138 GRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHACAS--IANLCVG 195

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           +   VL     R     +L  A N+LI  Y     + +AR+LFD+IP            +
Sbjct: 196 QQLHVLCL---RKAFNANLTVA-NSLIDMYCSCANLLDARRLFDEIP------------E 239

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
           RN+V+WN+MI  Y++   +++ + + E  L+ + F+  ++ S    +     AS  F + 
Sbjct: 240 RNLVTWNTMIAWYSQCNHLMALQLLREMNLQPNCFTLTSITSACAGL-----ASLRFGQQ 294

Query: 260 PH---------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
            H          D    NA+V  Y++ G++  A   F  M  K+ +SW SMI G   N  
Sbjct: 295 VHGAALRRNYGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITGYGMNGY 354

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINN 368
              +I+LF  M   G  PD   F  ++   +  G+VD              + P+  I  
Sbjct: 355 ANESIQLFTSMIHAGVHPDHVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQPNKEIYG 414

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
            +  + AR G + EA  +   M    +   W A++G C  H      L    + +  ++ 
Sbjct: 415 CVTNLLARAGRLREAFDLIHRMPFAPDETVWGALLGACKMH--KNVELGRLAARKIIEIN 472

Query: 429 P----TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
           P    TY+   ++ +A    G   + R+  +      GI  R E   S +D+  +
Sbjct: 473 PDRAKTYVLLANIYAAGNKWGEYADTRRLLR------GIGSRKEAGTSWIDVTDK 521



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 76/151 (50%), Gaps = 7/151 (4%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y     +  AR+LFDE+P+R++V+WN MI+ Y        L   + L ++  + +C
Sbjct: 217 LIDMYCSCANLLDARRLFDEIPERNLVTWNTMIAWYSQCN---HLMALQLLREMNLQPNC 273

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARN----VVSWNAMISGFLQNGDVANAIEFFDR 116
            T  ++ S  A    +    ++  +   RN    +   NA++  + + G +ANA + F+ 
Sbjct: 274 FTLTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMCNALVDMYSKCGSIANAKKMFNM 333

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVK 147
           M  +D  S +++++G   NG  +E+ ++   
Sbjct: 334 MDYKDKLSWTSMITGYGMNGYANESIQLFTS 364


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 190/631 (30%), Positives = 310/631 (49%), Gaps = 83/631 (13%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYI--------------------------- 37
           Y +   +  A KLF+E P + V  WN ++  Y                            
Sbjct: 46  YARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDN 105

Query: 38  --------SSRGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEALRLFNS 85
                   S  G   LE  + +   + ++    D    + +I  Y+K G+M +A+++F  
Sbjct: 106 YTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTE 165

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMP-----GRDSASLSALVSGLIQNGELDE 140
            P ++VV W ++I+G+ QNG    A+ FF RM        D  +L +  S   Q  + + 
Sbjct: 166 YPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNL 225

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
              V      R  G +  +   N+++  YG+ G +  A  LF ++P             +
Sbjct: 226 GRSVHGFVKRR--GFDTKLCLANSILNLYGKTGSIRSAANLFREMPY------------K 271

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLE-RDTFSWNTMISG--------------YIH 245
           +I+SW+SM+ CYA  G   +A  +F +M++ R   +  T+IS               +IH
Sbjct: 272 DIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIH 331

Query: 246 VLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
            L +     L       D     A++  Y +  + + A+D F RMP+K++VSW  + +G 
Sbjct: 332 KLAVNYGFEL-------DITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGY 384

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP 365
                   ++ +F  M   G +PD      IL+ SS +  +   + +H  V+K+   +  
Sbjct: 385 AEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFVSKSGFDNNE 444

Query: 366 -INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            I  +LI +YA+C +I  A  +F+ M+  K+VV+W+++I     HG   EAL+LF  M +
Sbjct: 445 FIGASLIELYAKCSSIDNANKVFKGMRR-KDVVTWSSIIAAYGFHGQGEEALKLFYQMSN 503

Query: 425 FK-VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
              V P  +TF+S+LSAC+HAGL+EEG + F  MVNEY + P  EH+  +VD++GR G L
Sbjct: 504 HSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNTEHYGIMVDLLGRMGEL 563

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
           + A+D+I  MP +    VWGALLGACR+H N+++ ++AA  L  ++P ++  Y LL N+Y
Sbjct: 564 DKALDMINEMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIY 623

Query: 544 ADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
                W DA ++R L+K N  KK  G S V+
Sbjct: 624 CVDKNWHDAAKLRTLIKENRFKKIVGQSMVE 654



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 125/537 (23%), Positives = 232/537 (43%), Gaps = 93/537 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS-----GFLEEARYLFDIM 55
           +I  Y K  +M  A K+F E P++DVV W  +I+GY    GS      F      L  + 
Sbjct: 146 LIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGY-EQNGSPELALAFFSRMVVLEQVS 204

Query: 56  PE----------------------------------RDCVTWNTVISGYAKTGEMEEALR 81
           P+                                  + C+  N++++ Y KTG +  A  
Sbjct: 205 PDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLA-NSILNLYGKTGSIRSAAN 263

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           LF  MP ++++SW++M++ +  NG   NA+  F+ M  +    +  ++ + +     +  
Sbjct: 264 LFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSN 323

Query: 138 LDEAA---RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           L+E     ++ V  G   D     +     L+  Y +    + A  LF+++P        
Sbjct: 324 LEEGKHIHKLAVNYGFELD-----ITVSTALMDMYMKCFSPKNAIDLFNRMP-------- 370

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME 250
               K+++VSW  +   YA+ G    +  +F  ML      D  +   +++    +  ++
Sbjct: 371 ----KKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQ 426

Query: 251 EASNL--FVKMPHPDT--LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           +A  L  FV     D       +++  YA+  +++ A   FK M +K++V+W+S+IA   
Sbjct: 427 QALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSIIAAYG 486

Query: 307 TNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTK-TVIP 362
            +   E A+KLF QM    + KP+  TF SILS  S  G+++  + M  H MV +  ++P
Sbjct: 487 FHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKM-FHVMVNEYQLMP 545

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           +      ++ +  R G + +A  +  EM +      W A++G C  H      +    ++
Sbjct: 546 NTEHYGIMVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGACRIH--QNIKIGELAAL 603

Query: 423 RSFKVLPTYITFISVLS-----------ACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
             F + P +  + ++LS           A     L++E R  FK +V +  +E + E
Sbjct: 604 NLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENR--FKKIVGQSMVEIKNE 658


>gi|302783655|ref|XP_002973600.1| hypothetical protein SELMODRAFT_99651 [Selaginella moellendorffii]
 gi|300158638|gb|EFJ25260.1| hypothetical protein SELMODRAFT_99651 [Selaginella moellendorffii]
          Length = 536

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 169/549 (30%), Positives = 281/549 (51%), Gaps = 60/549 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+  Y +       RK FD+MP  DVVSW+ +++ +     +G +  A+  FD MP+R+ 
Sbjct: 34  MLLAYAQNGYFLGGRKAFDQMPSWDVVSWSTLVTFFCQ---TGDIHSAKNAFDCMPQREL 90

Query: 61  VTWNTVISGYAKTGEMEEA---LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           ++WNT+++  A+ G++ +      +F+ MP  N+V+WN M+SGF QNG V NA   F+ +
Sbjct: 91  LSWNTLLAANARNGQIHDVQGMFWIFHRMPQHNLVTWNVMLSGFAQNGKVDNAKLMFESL 150

Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR-VE 176
           P RD+ S                                     +NT++  Y   G  +E
Sbjct: 151 PARDTVS-------------------------------------WNTMMSSYSATGGFLE 173

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           E+R LF +IP            +R++VSWNSM++      D+  +R +F+ M  RD  SW
Sbjct: 174 ESRDLFFRIP------------RRDLVSWNSMLVALVLNDDLAGSRTVFDLMPRRDVVSW 221

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
             +I  YIH   M EA  +   M  P   +WN ++ GY Q  NLE A   F ++ +++ +
Sbjct: 222 KILIQAYIHNSRMAEAQGVVESMVDPSVESWNILLHGYGQNRNLEEAKLLFDKLHERDAM 281

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV-DLHLGMQIHQM 355
           SW+S++           A+  F +M +EG +P      ++L     ++ D      +H  
Sbjct: 282 SWSSILCAYVAAGLGAEALMTFREMDLEGFRPSTKCLVAVLDACGSLLGDFAHCKIVHSS 341

Query: 356 VTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
           + +  +  +  +  ++I+MY+RCG++  AR IF++ +  +    W++MI G A +G A E
Sbjct: 342 IAEAGLDRLKGVETSIISMYSRCGSLRVAREIFDK-RPQELRARWSSMIAGYAQNGHARE 400

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           AL+LF+ M    V P  IT +S++SAC+H G + +G + F S+  ++ I    + +  +V
Sbjct: 401 ALDLFRQMLLDGVEPNSITLVSIISACSHTGALGDGLRCFGSLRQDFNIVASDDIYKCVV 460

Query: 475 DIVGRHGRLEDAMDLIKG-MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           D++GR G L +A + I   MPFE D   W +LLG+CR H +V   Q  A    +     S
Sbjct: 461 DVLGRAGMLSEAEEFISAMMPFEADSCTWMSLLGSCRSHGDVRRGQKIAAMEFEAWSPTS 520

Query: 534 TPYVLLYNM 542
           + +VLL N+
Sbjct: 521 STFVLLSNL 529


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 159/417 (38%), Positives = 238/417 (57%), Gaps = 42/417 (10%)

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQM------------------------------ 228
           K N+ SWNS+I   A++GD V A   F  M                              
Sbjct: 38  KTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQ 97

Query: 229 ---------LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279
                     E D F  + ++  Y    ++ +A  LF ++ H + ++W +M++GY Q  +
Sbjct: 98  AHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDD 157

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILS 338
              AL  F  M +++++SWNS+IA    N     ++++F +M  +GE   +  T S++L 
Sbjct: 158 AHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLL 217

Query: 339 MSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
             +      LG  IH  V K  +  +V +  ++I MY +CG +  AR  F+ M+  KNV 
Sbjct: 218 ACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMRE-KNVK 276

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SW+AM+ G   HG A EALE+F  M    V P YITF+SVL+AC+HAGL+EEG   FK+M
Sbjct: 277 SWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAM 336

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517
            +E+ +EP +EH+  +VD++GR G L++A DLIKGM   PD  VWGALLGACR+H NV+L
Sbjct: 337 SHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDL 396

Query: 518 AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            +++A  L +++P+N   YVLL N+YAD GRW+D   +R+LMK++ + KP G+S VD
Sbjct: 397 GEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVD 453



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 194/453 (42%), Gaps = 81/453 (17%)

Query: 82  LFNS-MPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDS-----ASLSALV 129
           LFN  +   NV SWN++I+   ++GD   A+  F  M      P R +      S SAL+
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
             L    +  + A +         G E  +   + L+  Y + G + +AR LFD+I    
Sbjct: 91  D-LHSGRQAHQQALIF--------GFEPDLFVSSALVDMYSKCGELRDARTLFDEIS--- 138

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
                     RNIVSW SMI  Y +  D   A  +F+ M ERD  SWN++I+ Y      
Sbjct: 139 ---------HRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMS 189

Query: 250 EEASNLFVKMPHPDTLTWNA---------------------------------------- 269
            E+  +F +M     + +NA                                        
Sbjct: 190 TESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTS 249

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           ++  Y + G +E+A   F RM +KN+ SW++M+AG   +   + A+++F +M + G KP+
Sbjct: 250 IIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPN 309

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIF 387
             TF S+L+  S    L  G    + ++    V P V     ++ +  R G + EA  + 
Sbjct: 310 YITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLI 369

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC-AHAGL 446
           + MKL  + V W A++G C  H      L    + + F++ P    +  +LS   A AG 
Sbjct: 370 KGMKLRPDFVVWGALLGACRMH--KNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGR 427

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
            E+  +    M N   ++P      SLVDI GR
Sbjct: 428 WEDVERMRILMKNSGLVKPP---GFSLVDIKGR 457



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 147/298 (49%), Gaps = 39/298 (13%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G L +AR LFD +  R+ V+W ++I+GY +  +   ALR+F+ M  R+V+SWN++I+ + 
Sbjct: 125 GELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYA 184

Query: 103 QNGDVANAIEFFDRMP-----GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCD---G 154
           QNG    ++E F RM        ++ +LSA++     +G     ++ L KC        G
Sbjct: 185 QNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSG-----SQRLGKCIHDQVIKMG 239

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
            E  V    ++I  Y + G+VE ARK FD++             ++N+ SW++M+  Y  
Sbjct: 240 LESNVFVGTSIIDMYCKCGKVEMARKAFDRMR------------EKNVKSWSAMVAGYGM 287

Query: 215 AGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTL 265
            G    A E+F +M    ++ +  ++ ++++   H   +EE  + F  M H     P   
Sbjct: 288 HGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVE 347

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYE----GAIKLF 318
            +  MV    + G L+ A D  K M  + + V W +++  C  +K+ +     A KLF
Sbjct: 348 HYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLF 405



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 137/287 (47%), Gaps = 36/287 (12%)

Query: 264 TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
           T +W      Y+   N  L   F K + + N+ SWNS+IA    + D   A++ F  M+ 
Sbjct: 12  TFSWKIYRRRYSN--NPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRK 69

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVE 382
              KP+R TF   +   S ++DLH G Q HQ  +     PD+ +++AL+ MY++CG + +
Sbjct: 70  LSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRD 129

Query: 383 ARIIFEEMKLL------------------------------KNVVSWNAMIGGCASHGFA 412
           AR +F+E+                                 ++V+SWN++I   A +G +
Sbjct: 130 ARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMS 189

Query: 413 TEALELFKSM-RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
           TE++E+F  M +  ++    +T  +VL ACAH+G    G+      V + G+E  +    
Sbjct: 190 TESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKC-IHDQVIKMGLESNVFVGT 248

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
           S++D+  + G++E A      M  E +   W A++    +H + + A
Sbjct: 249 SIIDMYCKCGKVEMARKAFDRMR-EKNVKSWSAMVAGYGMHGHAKEA 294



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 116/274 (42%), Gaps = 63/274 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+GYV+  +  +A ++FD M +RDV+SWN +I+ Y     +G   E+  +F  M +   
Sbjct: 148 MITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQ---NGMSTESMEIFHRMVKDGE 204

Query: 61  VTWN----------------------------------------TVISGYAKTGEMEEAL 80
           + +N                                        ++I  Y K G++E A 
Sbjct: 205 INYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMAR 264

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNG 136
           + F+ M  +NV SW+AM++G+  +G    A+E F  M       +  +  ++++     G
Sbjct: 265 KAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAG 324

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            L+E            D  E  V  Y  ++   G+ G ++EA   FD I          +
Sbjct: 325 LLEEGWHWFKAMSHEFD-VEPGVEHYGCMVDLLGRAGYLKEA---FDLIK--------GM 372

Query: 197 RFKRNIVSWNSMIMCYAKAGDV----VSAREIFE 226
           + + + V W +++       +V    +SAR++FE
Sbjct: 373 KLRPDFVVWGALLGACRMHKNVDLGEISARKLFE 406


>gi|357516795|ref|XP_003628686.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355522708|gb|AET03162.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 699

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 203/625 (32%), Positives = 317/625 (50%), Gaps = 76/625 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSGF--- 44
           +I+ Y K  ++  A +LFD+MPQRD VSWN +ISGY+++             R SG    
Sbjct: 40  LITAYSKCAQLPLALQLFDKMPQRDTVSWNAVISGYVNTADLDSTWQLLNAMRVSGHAFD 99

Query: 45  ----------------LEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEALRLFN 84
                           LE  + L  +M +     +  + + ++  YAK G +++AL +F 
Sbjct: 100 NHTFGSTLKGVARAQRLELGQQLHSVMIKMRLNENVFSGSALLDMYAKCGRVDDALVVFR 159

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDE 140
            MP  N VSWN +I+G+ + GD+  A            G D  ++S L++ L  +G    
Sbjct: 160 YMPECNYVSWNTLIAGYSRVGDLDMAFWLMRCQELEGVGIDDGTVSPLLTLL--DGVRFY 217

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF-DKIPVNCDRGEGNVRFK 199
           +  + + C     G E      N +I  Y +   +++A ++F   + V C          
Sbjct: 218 SLVMQLHCKIVKHGLEAFNIVCNAIITAYSECCSLQDAERVFVGAVTVTC---------- 267

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYI---HVLDMEEA 252
           R++V+WNSM+  Y        A ++F +M     E D +S+  +ISG     H    E  
Sbjct: 268 RDLVTWNSMLAAYLLHKKENLAFDVFIEMQSFGFEPDDYSYTGVISGCSIKEHKSRGESL 327

Query: 253 SNLFVKMPHPDTL-TWNAMVSGYAQIGN--LELALDFFKRMPQKNLVSWNSMIAGCETNK 309
             L +K     ++   NA+++ Y    N  +E AL  F  M  K+  +WNS++AG     
Sbjct: 328 HGLVIKRGAEVSVPVSNALIAMYLGFDNRCMEDALRIFFSMDVKDCCTWNSVLAGYVQVG 387

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA 369
             E A++LF+Q++    + D +TFS+++   S +  L LG Q+H +  K         N 
Sbjct: 388 RSEDALRLFVQVRSLFVEIDDYTFSAVIRCCSDLATLQLGQQVHVLSLKVGFD----TNK 443

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
            +          +A+  FE      N + WN++I G A HG    ALELF  MR  KV P
Sbjct: 444 YVGK--------DAKKCFETTSN-DNAIIWNSIIFGYAQHGQGNIALELFYLMREKKVKP 494

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
            +ITF++VL+AC+H GLVEEGR+  +SM +++GI  R+EH+A  VD+ GR G LE+   L
Sbjct: 495 DHITFVAVLTACSHNGLVEEGRKIIQSMESDFGIPLRMEHYACAVDLYGRAGYLEEGKAL 554

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
           ++ MPFEPD  V   LLGACR   N+ELA   A+ L+ +EPE+ + YVLL ++Y  +  W
Sbjct: 555 VETMPFEPDAMVLRTLLGACRSCGNIELASHVAKMLLVLEPEDHSTYVLLSDLYGRLKMW 614

Query: 550 DDANEVRLLMKSNNIKKPTGYSWVD 574
           D+   V  LM+   +KK  G+SW++
Sbjct: 615 DEKASVTRLMRERGVKKVPGWSWIE 639



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 133/497 (26%), Positives = 240/497 (48%), Gaps = 58/497 (11%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD--R 116
           D  T N +I+ Y+K  ++  AL+LF+ MP R+ VSWNA+ISG++   D+ +  +  +  R
Sbjct: 33  DLYTSNNLITAYSKCAQLPLALQLFDKMPQRDTVSWNAVISGYVNTADLDSTWQLLNAMR 92

Query: 117 MPGR--DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
           + G   D+ +  + + G+ +   L E  + L     +    E++    + L+  Y + GR
Sbjct: 93  VSGHAFDNHTFGSTLKGVARAQRL-ELGQQLHSVMIKMRLNENVFSG-SALLDMYAKCGR 150

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD------VVSAREIFEQM 228
           V++A  +F  +P            + N VSWN++I  Y++ GD      ++  +E+    
Sbjct: 151 VDDALVVFRYMP------------ECNYVSWNTLIAGYSRVGDLDMAFWLMRCQELEGVG 198

Query: 229 LERDTFS-WNTMISGY-IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
           ++  T S   T++ G   + L M+    +         +  NA+++ Y++  +L+ A   
Sbjct: 199 IDDGTVSPLLTLLDGVRFYSLVMQLHCKIVKHGLEAFNIVCNAIITAYSECCSLQDAERV 258

Query: 287 F---KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
           F     +  ++LV+WNSM+A    +K    A  +FI+MQ  G +PD ++++ ++S  S  
Sbjct: 259 FVGAVTVTCRDLVTWNSMLAAYLLHKKENLAFDVFIEMQSFGFEPDDYSYTGVISGCSIK 318

Query: 344 VDLHLGMQIHQMVTKT-VIPDVPINNALITMYA----RCGAIVEARIIFEEMKLLKNVVS 398
                G  +H +V K      VP++NALI MY     RC  + +A  IF  M  +K+  +
Sbjct: 319 EHKSRGESLHGLVIKRGAEVSVPVSNALIAMYLGFDNRC--MEDALRIFFSMD-VKDCCT 375

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSM 457
           WN+++ G    G + +AL LF  +RS  V     TF +V+  C+    ++ G+Q H  S+
Sbjct: 376 WNSVLAGYVQVGRSEDALRLFVQVRSLFVEIDDYTFSAVIRCCSDLATLQLGQQVHVLSL 435

Query: 458 -----VNEYGIEPRIEHFA-----------SLVDIVGRHGRLEDAMDLIKGM---PFEPD 498
                 N+Y  +   + F            S++    +HG+   A++L   M     +PD
Sbjct: 436 KVGFDTNKYVGKDAKKCFETTSNDNAIIWNSIIFGYAQHGQGNIALELFYLMREKKVKPD 495

Query: 499 KAVWGALLGACRVHNNV 515
              + A+L AC  HN +
Sbjct: 496 HITFVAVLTACS-HNGL 511



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 4/152 (2%)

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
           I D+  +N LIT Y++C  +  A  +F++M   ++ VSWNA+I G  +        +L  
Sbjct: 31  ISDLYTSNNLITAYSKCAQLPLALQLFDKMP-QRDTVSWNAVISGYVNTADLDSTWQLLN 89

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
           +MR         TF S L   A A  +E G+Q   S++ +  +   +   ++L+D+  + 
Sbjct: 90  AMRVSGHAFDNHTFGSTLKGVARAQRLELGQQ-LHSVMIKMRLNENVFSGSALLDMYAKC 148

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALL-GACRV 511
           GR++DA+ + + MP E +   W  L+ G  RV
Sbjct: 149 GRVDDALVVFRYMP-ECNYVSWNTLIAGYSRV 179


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 188/636 (29%), Positives = 328/636 (51%), Gaps = 90/636 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +++ Y + R++  A ++F  M  RD VS+N +ISG +     GF + A  LF  M     
Sbjct: 302 LVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQ---GFSDRALELFTKMQRDCL 358

Query: 57  ERDCVTWNTVISG-----------------------------------YAKTGEMEEALR 81
           + DC+T  +++S                                    Y+K  ++E A +
Sbjct: 359 KPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHK 418

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------------PG--RDSASLSA 127
            F +    N+V WN M+  + Q  +++++ E F +M            P   R   SL A
Sbjct: 419 FFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGA 478

Query: 128 LVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV 187
           L  G       ++    ++K G + +     V   + LI  Y + G++  A ++  ++P 
Sbjct: 479 LYLG-------EQIHTHVIKTGFQLN-----VYVCSVLIDMYAKYGQLALALRILRRLP- 525

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGY 243
                      + ++VSW +MI  Y +      A ++FE+M    ++ D   + + IS  
Sbjct: 526 -----------EDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISAC 574

Query: 244 IHVLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
             +  + +   +  +        D    NA++S YA+ G ++ A   F+++  KN +SWN
Sbjct: 575 AGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWN 634

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           S+++G   +  +E A+++F++M     + +  T+ S +S ++ + ++  G QIH MV KT
Sbjct: 635 SLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKT 694

Query: 360 -VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
               +  ++N+LI++YA+ G+I +A   F +M   +NV+SWNAMI G + HG   EAL L
Sbjct: 695 GYDSEREVSNSLISLYAKSGSISDAWREFNDMSE-RNVISWNAMITGYSQHGCGMEALRL 753

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F+ M+   ++P ++TF+ VLSAC+H GLV+EG  +F+SM   + + P+ EH+  +VD++G
Sbjct: 754 FEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLG 813

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           R G+L+ AM+ IK MP   D  +W  LL AC +H N+E+ + AA  L+++EPE+S  YVL
Sbjct: 814 RAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVL 873

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + N+YA   +W   +  R LMK   +KK  G SW++
Sbjct: 874 ISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIE 909



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 173/655 (26%), Positives = 274/655 (41%), Gaps = 152/655 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG------------------- 41
           ++  Y +  +   A K+FDE   R V SWN MI  +++ +                    
Sbjct: 99  LVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPN 158

Query: 42  ----SGFLEEA------------------RYLFDIMPERDCVTWNTVISGYAKTGEMEEA 79
               +G L+                     Y FD  P    +  N +I  Y+K G +E A
Sbjct: 159 GYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSP----LVANLLIDLYSKNGYIESA 214

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD--------SASLSALVSG 131
            ++FN +  +++V+W AMISG  QNG    AI  F  M   +        S+ LSA  S 
Sbjct: 215 KKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSA--ST 272

Query: 132 LIQNGELDEAARVLV-KCGSR-----CDG-------GEDLVRA--------------YNT 164
            IQ  EL E    LV K G       C+G          L+ A              YN+
Sbjct: 273 KIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNS 332

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEG---------------------------NVR 197
           LI G  Q+G  + A +LF K+  +C + +                               
Sbjct: 333 LISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAG 392

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
              +I+   S++  Y+K  DV +A + F      +   WN M+  Y  + ++ ++  +F 
Sbjct: 393 MSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFR 452

Query: 258 KMPH----PDTLTW-----------------------------------NAMVSGYAQIG 278
           +M      P+  T+                                   + ++  YA+ G
Sbjct: 453 QMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYG 512

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
            L LAL   +R+P+ ++VSW +MIAG   +  +  A++LF +M+  G + D   F+S +S
Sbjct: 513 QLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAIS 572

Query: 339 MSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
             +GI  L  G QIH Q        D+ INNALI++YARCG I EA + FE++   KN +
Sbjct: 573 ACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIG-DKNNI 631

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWN+++ G A  G+  EAL++F  M   +      T+ S +SA A    +++G+Q   SM
Sbjct: 632 SWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQ-IHSM 690

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           V + G +   E   SL+ +  + G + DA      M  E +   W A++     H
Sbjct: 691 VLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGYSQH 744



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 217/462 (46%), Gaps = 27/462 (5%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           ++++  Y + G+   A+++F+    R+V SWN MI  F+           F RM      
Sbjct: 97  DSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT 156

Query: 124 SLSALVSGLIQNGELDEAARVLVK-CGSRC--DGGEDLVRAYNTLIVGYGQRGRVEEARK 180
                 +G+++     + A   VK   SR    G +      N LI  Y + G +E A+K
Sbjct: 157 PNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKK 216

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +F+ I +            ++IV+W +MI   ++ G    A  +F  M   + F    ++
Sbjct: 217 VFNCICM------------KDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVL 264

Query: 241 SGY------IHVLDM-EEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           S        I + ++ E+   L +K   H +T   N +V+ Y++   L  A   F  M  
Sbjct: 265 SSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNS 324

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           ++ VS+NS+I+G       + A++LF +MQ +  KPD  T +S+LS  + +  LH GMQ+
Sbjct: 325 RDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQL 384

Query: 353 HQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H    K  +  D+ +  +L+ +Y++C  +  A   F   +  +N+V WN M+        
Sbjct: 385 HSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTE-TENIVLWNVMLVAYGQLDN 443

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
            +++ E+F+ M+   ++P   T+ S+L  C   G +  G Q   + V + G +  +   +
Sbjct: 444 LSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ-IHTHVIKTGFQLNVYVCS 502

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
            L+D+  ++G+L  A+ +++ +P E D   W A++     H+
Sbjct: 503 VLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQHD 543



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 144/342 (42%), Gaps = 45/342 (13%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           + L  +++V  Y + G+   A+  F     +++ SWN MI      K       LF +M 
Sbjct: 92  EPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRML 151

Query: 323 VEGEKPDRHTFSSIL-SMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAI 380
            EG  P+ +TF+ +L +   G +  +   Q+H           P + N LI +Y++ G I
Sbjct: 152 AEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYI 211

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
             A+ +F  +  +K++V+W AMI G + +G   EA+ LF  M + ++ PT     SVLSA
Sbjct: 212 ESAKKVFNCI-CMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSA 270

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL----------------- 483
                L E G Q    +V ++G          LV +  R  +L                 
Sbjct: 271 STKIQLFELGEQ-LHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVS 329

Query: 484 --------------EDAMDLIKGMP---FEPDKAVWGALLGAC----RVHNNVELAQVAA 522
                         + A++L   M     +PD     +LL AC     +H  ++L   A 
Sbjct: 330 YNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAI 389

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           +A M  +       + LY+  ADV   + A++  L  ++ NI
Sbjct: 390 KAGMSADIILEGSLLDLYSKCADV---ETAHKFFLTTETENI 428


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 174/518 (33%), Positives = 271/518 (52%), Gaps = 49/518 (9%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
           ++  YA  GE     ++F+ M  RNVV +N MI  ++ N    + +  F  M        
Sbjct: 59  LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMV------- 111

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
                    NG               C   E+L   Y  LI G              D +
Sbjct: 112 ---------NGGFRPDNYTYPCVLKACSCSENL--RYGLLIHG--------------DVL 146

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
            V  D          N+   N +I  Y K G +  AR +F++M+ +D  SWN+M++GY H
Sbjct: 147 KVGLDF---------NLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAH 197

Query: 246 VLDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIG--NLELALDFFKRMPQKNLVSWN 299
            +  ++A  +  +M      PD  T  +++   A     N+      F  + +KNL+SWN
Sbjct: 198 NMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWN 257

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-TK 358
            MI     N     A+ L++QM+    +PD  TF+S+L     +  L LG +IH+ V  K
Sbjct: 258 VMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKK 317

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
            + P++ + N+LI MYARCG + +A+ +F+ MK  ++V SW ++I      G    A+ L
Sbjct: 318 KLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKF-RDVASWTSLISAYGMTGQGCNAVAL 376

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
           F  M +    P  I F+++LSAC+H+GL++EGR +FK M ++Y I PRIEH+A LVD++G
Sbjct: 377 FTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLG 436

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
           R GR+++A ++IK MP EP++ VW  LL +CRV  N+++  +AA+ L+++ PE S  YVL
Sbjct: 437 RAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVL 496

Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           L N+YA  GRW +  E+R +MK   I+K  G S V+ +
Sbjct: 497 LSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELN 534



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 110/456 (24%), Positives = 187/456 (41%), Gaps = 97/456 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSR--GSGFL------------- 45
           ++  Y    E    RK+FDEM  R+VV +NVMI  Y+++     G L             
Sbjct: 59  LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118

Query: 46  --------------EEARY-------LFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
                         E  RY       +  +  + +    N +I+ Y K G + EA R+F+
Sbjct: 119 NYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFD 178

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            M  ++VVSWN+M++G+  N    +A+E    M       D  ++++L+  +        
Sbjct: 179 EMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTS---- 234

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
                               + N L V               +KI VN +R        +
Sbjct: 235 --------------------SENVLYV---------------EKIFVNLER--------K 251

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMI--SGYIHVLDMEEASN 254
           N++SWN MI  Y K      A +++ QM    +E D  ++ +++   G +  L +    +
Sbjct: 252 NLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIH 311

Query: 255 LFV--KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
            +V  K   P+ L  N+++  YA+ G L+ A   F RM  +++ SW S+I+         
Sbjct: 312 EYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGC 371

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNAL 370
            A+ LF +M   G+ PD   F +ILS  S    L  G    + +T    + P +     L
Sbjct: 372 NAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACL 431

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           + +  R G + EA  I ++M +  N   W  ++  C
Sbjct: 432 VDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSC 467


>gi|57899090|dbj|BAD86909.1| putative PPR986-12 [Oryza sativa Japonica Group]
          Length = 560

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 173/523 (33%), Positives = 284/523 (54%), Gaps = 28/523 (5%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
            T+IS     G +  A  LF+ MP R+VV+W AM+SG+  NG    A++ F RM    +A
Sbjct: 7   TTLISSLCSRGAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAA 66

Query: 124 SLSALVSGLIQ--NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR-VEEARK 180
                +S ++    G    A  + +   +   G + +    N LI  Y      V +AR+
Sbjct: 67  PNEYTLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDARR 126

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSW 236
           LFD +      G G     R   SW SMI  YA+ G   +   +F+ ML    E  TF+ 
Sbjct: 127 LFDAL------GSG-----RTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFAC 175

Query: 237 NTMISGYIHVLDMEEASNLFV----KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           +  +     V+D+     L +    K    +    N+++  Y     +  A   F   P+
Sbjct: 176 SIALHACTLVIDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPE 235

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           +NL++WN+MIAG  +  D   A++L ++M    ++P+  T +SI S  + +  L  G Q+
Sbjct: 236 RNLITWNTMIAG-YSQCDPLMALQLLLEMN---DEPNCFTLTSITSACADLAALRCGKQV 291

Query: 353 HQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H  V + +   D+ + NAL+ MY++CG+I  A+ +F+ M   K+  SW +MI G   +G+
Sbjct: 292 HGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKNVFDRMGC-KDKFSWTSMIAGYGMNGY 350

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             EA++LF SM    V P ++ F+S++S+C+HAGLV+EG   F+SM+NEY ++P  E + 
Sbjct: 351 GNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYG 410

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
           S+V+++ R GRL +A+DLI  MPF PD+ VWGALLGA ++HNNVE+ ++AA  + ++ P+
Sbjct: 411 SVVNLLARAGRLREALDLIDTMPFAPDEYVWGALLGASKMHNNVEMGRLAARKITEINPD 470

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +   Y++L ++YA   +W +    R  ++    +K  G SW++
Sbjct: 471 DVKNYIMLASIYAAGSKWGEYAFTRRSLRGIGSRKEAGISWIE 513



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 201/462 (43%), Gaps = 72/462 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------- 53
           +IS    R  +  AR LFDEMP+RDVV+W  M+SGY S   +G   EA  +F        
Sbjct: 9   LISSLCSRGAVCHARALFDEMPERDVVAWTAMLSGYAS---NGLRREALDVFRRMVAAGA 65

Query: 54  ----------------------IMP----------ERDCVTWNTVISGYAKTGE-MEEAL 80
                                  MP          +R     N +I  YA   E + +A 
Sbjct: 66  APNEYTLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDAR 125

Query: 81  RLFNSM-PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG--- 136
           RLF+++   R   SW +MI+G+ + G     +  F  M  +D   LS     +  +    
Sbjct: 126 RLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTML-KDGVELSTFACSIALHACTL 184

Query: 137 --ELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
             +L    ++ ++C  +     D+ +   N+LI  Y    R+ +AR LFD  P       
Sbjct: 185 VIDLCLGQQLHLQCIKK---ALDVNLAVVNSLIDMYCTCARILDARSLFDGTP------- 234

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM---E 250
                +RN+++WN+MI  Y++   +++ + + E   E + F+  ++ S    +  +   +
Sbjct: 235 -----ERNLITWNTMIAGYSQCDPLMALQLLLEMNDEPNCFTLTSITSACADLAALRCGK 289

Query: 251 EASNLFVKMPHPDTLTW-NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           +     ++  + D L   NA+V  Y++ G++  A + F RM  K+  SW SMIAG   N 
Sbjct: 290 QVHGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNG 349

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPIN 367
               A++LF  M   G  PD   F S++S  S  G+VD         +    + P+  + 
Sbjct: 350 YGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVY 409

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            +++ + AR G + EA  + + M    +   W A++G    H
Sbjct: 410 GSVVNLLARAGRLREALDLIDTMPFAPDEYVWGALLGASKMH 451



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 107/261 (40%), Gaps = 30/261 (11%)

Query: 47  EARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF-------NSMPARNVVSWNAMIS 99
           +AR LFD  PER+ +TWNT+I+GY++   +  AL+L        N     ++ S  A ++
Sbjct: 225 DARSLFDGTPERNLITWNTMIAGYSQCDPL-MALQLLLEMNDEPNCFTLTSITSACADLA 283

Query: 100 GFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLV 159
                  V  A+    R    D    +ALV    + G +  A  V  + G +        
Sbjct: 284 ALRCGKQVHGAV--LRRSYSDDLQMGNALVDMYSKCGSITNAKNVFDRMGCKDK------ 335

Query: 160 RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVV 219
            ++ ++I GYG  G   EA +LF  +         +     + V + S+I   + AG V 
Sbjct: 336 FSWTSMIAGYGMNGYGNEAVQLFSSMI--------HAGVHPDHVVFLSLISSCSHAGLVD 387

Query: 220 SAREIFEQMLERDTFSWNTMISGYIHVL-----DMEEASNLFVKMPH-PDTLTWNAMVSG 273
                F  M+       N  + G +  L      + EA +L   MP  PD   W A++  
Sbjct: 388 EGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMPFAPDEYVWGALLGA 447

Query: 274 YAQIGNLELALDFFKRMPQKN 294
                N+E+     +++ + N
Sbjct: 448 SKMHNNVEMGRLAARKITEIN 468


>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
 gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
          Length = 531

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 163/479 (34%), Positives = 264/479 (55%), Gaps = 16/479 (3%)

Query: 105 GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGG-EDLVR 160
           G  A+A   FDR+P  D    + L+ G   +    +A  +   + +  + C GG     R
Sbjct: 56  GGTAHARLVFDRIPHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKR 115

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
            +  ++      G  E   ++   +       +  VR        N++I  +A  GD+ +
Sbjct: 116 TFPFVLRACAAMGASETGAQVHAHVVKAGCESDAFVR--------NALIGMHATCGDLGA 167

Query: 221 AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNL 280
           A  +F+     D  +W+ MISG+    D+  A  LF + P  D ++WN M++ YA++G++
Sbjct: 168 AAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDM 227

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
             A + F   P +++VSWN+MI+G      ++ A++LF QMQ  GEKPD  T  S+LS  
Sbjct: 228 APARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSAC 287

Query: 341 SGIVDLHLGMQIHQMVT---KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
           +   D+  G ++H+ ++     + P   + NALI MYA+CG++  A  +F  M+  KNV 
Sbjct: 288 ADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQD-KNVS 346

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           +WN++IGG A HG  TEA+++F+ M    V P  ITF++VL AC+H G+V++G ++F  M
Sbjct: 347 TWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVACSHGGMVDKGHEYFNLM 406

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517
              Y IEP ++H+  +VD++ R G L++A + I  M  EP+  +W  LLGACR+H  +EL
Sbjct: 407 QQRYMIEPNVKHYGCMVDMLSRAGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGELEL 466

Query: 518 AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           A+ A + L+K   + S  +VLL N+YA VG W  +  +R LM  + + K  G + VD S
Sbjct: 467 AEHANQELLKARSDASGDFVLLSNIYASVGEWLGSENMRKLMDDSGVNKEAGCAVVDGS 525



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 167/369 (45%), Gaps = 67/369 (18%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D    N +I  +A  G++  A  LF+     + V+W+AMISGF + GD+  A E FD 
Sbjct: 146 ESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDE 205

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            P +D      LVS                               +N +I  Y + G + 
Sbjct: 206 SPVKD------LVS-------------------------------WNVMITAYAKLGDMA 228

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERD 232
            AR+LFD  P             R++VSWN+MI  Y + G    A E+FEQM     + D
Sbjct: 229 PARELFDGAP------------DRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPD 276

Query: 233 TFSWNTMISGYIHVLDMEEASNL-------FVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
           T +  +++S      DM+    L       F ++  P T+  NA++  YA+ G++  AL+
Sbjct: 277 TVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIG-PSTVLGNALIDMYAKCGSMTSALE 335

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GI 343
            F  M  KN+ +WNS+I G   +     AI +F +M     KPD  TF ++L   S  G+
Sbjct: 336 VFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVACSHGGM 395

Query: 344 VDLHLGMQIHQMVTKTVI--PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           VD   G +   ++ +  +  P+V     ++ M +R G + EA      MK+  N V W  
Sbjct: 396 VD--KGHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEAFEFIGTMKIEPNPVIWRT 453

Query: 402 MIGGCASHG 410
           ++G C  HG
Sbjct: 454 LLGACRIHG 462



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 156/317 (49%), Gaps = 29/317 (9%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++  A  LFD   + D V+W+ MISG+ + RG   +  AR LFD  P +D V+WN +I+ 
Sbjct: 164 DLGAAAALFDGEAREDAVAWSAMISGF-ARRGD--IGAARELFDESPVKDLVSWNVMITA 220

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASL 125
           YAK G+M  A  LF+  P R+VVSWNAMISG+++ G    A+E F++M       D+ ++
Sbjct: 221 YAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTM 280

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
            +L+S    +G++D   R+      R           N LI  Y + G +  A ++F  +
Sbjct: 281 LSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLM 340

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMIS 241
                         +N+ +WNS+I   A  G V  A ++F++ML+     D  ++  ++ 
Sbjct: 341 Q------------DKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLV 388

Query: 242 GYIH---VLDMEEASNLFVK--MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNL 295
              H   V    E  NL  +  M  P+   +  MV   ++ G L+ A +F   M  + N 
Sbjct: 389 ACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEAFEFIGTMKIEPNP 448

Query: 296 VSWNSMIAGCETNKDYE 312
           V W +++  C  + + E
Sbjct: 449 VIWRTLLGACRIHGELE 465



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 138/270 (51%), Gaps = 18/270 (6%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G L  A  LFD     D V W+ +ISG+A+ G++  A  LF+  P +++VSWN MI+ + 
Sbjct: 163 GDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYA 222

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
           + GD+A A E FD  P RD  S +A++SG ++ G   +A  +  +  +  +  + +    
Sbjct: 223 KLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTML- 281

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR---NIVSWNSMIMCYAKAGDVV 219
            +L+      G ++  R+L   +         + RF R   + V  N++I  YAK G + 
Sbjct: 282 -SLLSACADSGDMDAGRRLHRFL---------SGRFSRIGPSTVLGNALIDMYAKCGSMT 331

Query: 220 SAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYA 275
           SA E+F  M +++  +WN++I G      + EA ++F KM      PD +T+ A++   +
Sbjct: 332 SALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVACS 391

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
             G ++   ++F  M Q+ ++  N    GC
Sbjct: 392 HGGMVDKGHEYFNLMQQRYMIEPNVKHYGC 421



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 132/267 (49%), Gaps = 25/267 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           MI+ Y K  +MA AR+LFD  P RDVVSWN MISGY+     G  ++A  LF+ M     
Sbjct: 217 MITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVR---CGSHKQAMELFEQMQAMGE 273

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR------NVVSWNAMISGFLQNGDVANA 110
           + D VT  +++S  A +G+M+   RL   +  R      + V  NA+I  + + G + +A
Sbjct: 274 KPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGSMTSA 333

Query: 111 IEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG 170
           +E F  M  ++ ++ ++++ GL  +G + EA  V  K        +++   +  ++V   
Sbjct: 334 LEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEIT--FVAVLVACS 391

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-L 229
             G V++  + F+ +       +     + N+  +  M+   ++AG +  A E    M +
Sbjct: 392 HGGMVDKGHEYFNLM-------QQRYMIEPNVKHYGCMVDMLSRAGLLKEAFEFIGTMKI 444

Query: 230 ERDTFSWNTMISG-YIH-VLDMEEASN 254
           E +   W T++    IH  L++ E +N
Sbjct: 445 EPNPVIWRTLLGACRIHGELELAEHAN 471


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 169/468 (36%), Positives = 258/468 (55%), Gaps = 16/468 (3%)

Query: 106 DVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTL 165
           D    I F  R P  ++ S +  + G + +    EA  VL K   +CDG +     Y  L
Sbjct: 101 DYCTNILFNTRNP--NTFSWNVAIRGFLDSENPREAV-VLYKRVLQCDGTKPDNYTYPLL 157

Query: 166 IVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
                +   +    ++   +         ++ F  +I   N++I      GD+  AR++F
Sbjct: 158 FKACARLSLIRMGSEILGHVL--------HLGFDSDIFVSNAVIHLLVSCGDLDGARKMF 209

Query: 226 EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
           ++   RD  SWN+MI+GY    ++E A  LF  M +   ++W  MV GYAQ G L++A  
Sbjct: 210 DKSCVRDLVSWNSMINGYCG--NLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWK 267

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F  MP K++V WN+MI G       + A+ LF +MQ     PD  T  S LS  S +  
Sbjct: 268 LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGA 327

Query: 346 LHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           L +G+ IH  + K  +  +V +  ALI MYA+CG I +A  +F+E+   +N ++W A+I 
Sbjct: 328 LDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPG-RNSLTWTAIIS 386

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           G A HG A  A+  F  M    V+P  +TF+ +LSAC H GLVEEGR++F  M +++ + 
Sbjct: 387 GLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLS 446

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           P+++H++ +VD++GR G LE+A +LIK MP E D  VWGAL  ACR+H NV + + AA  
Sbjct: 447 PKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASK 506

Query: 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
           L++++P +S  YVLL NMY +   W +A + R LM+   ++K T  SW
Sbjct: 507 LLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEK-TPDSW 553



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 40/331 (12%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++  ARK+FD+   RD+VSWN MI+GY      G LE AR LFD M  +  V+W T++ G
Sbjct: 201 DLDGARKMFDKSCVRDLVSWNSMINGY-----CGNLESARKLFDSMTNKTMVSWTTMVVG 255

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASL 125
           YA++G ++ A +LF+ MP ++VV WNAMI G++       A+  F+ M       D  ++
Sbjct: 256 YAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTM 315

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGE-DLVRAYNT-LIVGYGQRGRVEEARKLFD 183
            + +S   Q G LD    V +      +  E  L  A  T LI  Y + G++ +A ++F 
Sbjct: 316 VSCLSACSQLGALD----VGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQ 371

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTM 239
           ++P             RN ++W ++I   A  G+   A   F +M++     D  ++  +
Sbjct: 372 ELP------------GRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGL 419

Query: 240 ISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QK 293
           +S   H   +EE    F +M       P    ++ MV    + G LE A +  K MP + 
Sbjct: 420 LSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEA 479

Query: 294 NLVSWNSMIAGCETNKDY---EGAIKLFIQM 321
           + V W ++   C  + +    E A    +QM
Sbjct: 480 DAVVWGALFFACRIHGNVLMGERAASKLLQM 510



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 133/305 (43%), Gaps = 58/305 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+GY    E   ARKLFD M  + +VSW  M+ GY     SG L+ A  LFD MP++D 
Sbjct: 223 MINGYCGNLE--SARKLFDSMTNKTMVSWTTMVVGYAQ---SGLLDMAWKLFDEMPDKDV 277

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNV----------------------------- 91
           V WN +I GY      +EAL LFN M A N+                             
Sbjct: 278 VPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHY 337

Query: 92  -----VSWN-----AMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                +S N     A+I  + + G +  AI+ F  +PGR+S + +A++SGL  +G    A
Sbjct: 338 IEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGA 397

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
                +        +++   +  L+      G VEE RK F ++                
Sbjct: 398 IAYFSEMIDNSVMPDEVT--FLGLLSACCHGGLVEEGRKYFSQM-------SSKFNLSPK 448

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQM-LERDTFSWNTM-ISGYIH--VLDMEEASNLFV 257
           +  ++ M+    +AG +  A E+ + M +E D   W  +  +  IH  VL  E A++  +
Sbjct: 449 LKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLL 508

Query: 258 KM-PH 261
           +M PH
Sbjct: 509 QMDPH 513


>gi|218190567|gb|EEC72994.1| hypothetical protein OsI_06907 [Oryza sativa Indica Group]
          Length = 711

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 190/632 (30%), Positives = 317/632 (50%), Gaps = 77/632 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY-ISSRGSGFLEEARYLFDIMPERD 59
           +I+ Y +  ++  +  +F  MP ++ VSW  MISG+ + +R    +E   +LF  M    
Sbjct: 54  LITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISGFALHNR----VEPCLHLFASMMLSS 109

Query: 60  C----VTW-----------------------------------NTVISGYAKTGEMEEAL 80
           C    +T+                                   N ++S YAK G +EEA 
Sbjct: 110 CKPNDITFATLFSVCTKHALLALGRSVHALQMRMGFHSYVHVSNALLSMYAKCGCIEEAQ 169

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNG 136
            +F  +  +++VSWNA+I G  Q     + ++    M  +    D+ S   ++S   ++ 
Sbjct: 170 FIFGCIACKDLVSWNAIIFGCSQYVLAKHCLDLLKEMERQHIVPDALSFLGVLSS-CRHA 228

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            L E  R   K      G +  +  Y+ ++   G+ G +EEA  L   + +         
Sbjct: 229 RLVEEGRHCFKTMIE-HGIKPGLDHYSCMVDLLGRAGLLEEAWDLIQTMSI--------- 278

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASN-- 254
               N V W S++      G++    +  E  L+ +     T     I    M   ++  
Sbjct: 279 --PPNAVIWGSLLGSCRVHGNISIGIQAAEHRLKLEPGKGETSTDQSILAAAMSSCADRQ 336

Query: 255 ----------LFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                     L VK+    T+   +++++ Y++   LE +   F+ MP KN VSW +MI+
Sbjct: 337 MFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAMIS 396

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363
           G   +   E  + LF  M++   KP+  TF+++ S+ +    L LG  +H +  +     
Sbjct: 397 GFALHNRVEPCLHLFASMRLSSCKPNDITFATLFSVCTNHALLALGKSVHALQMRMGFHS 456

Query: 364 -VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
            V ++NAL++MYA+CG I EA+ IF  +   K++VSWNAMI GC+ +G A   L+L K M
Sbjct: 457 YVHVSNALLSMYAKCGCIDEAQSIFGFIAC-KDLVSWNAMIFGCSQYGLAKHCLDLLKEM 515

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
               ++P  ++F+ VLS+C HA LVEEGR  FK+M+ E+GI+P ++H++ +VD++GR G 
Sbjct: 516 ERQHIVPDALSFLGVLSSCRHARLVEEGRHCFKTMI-EHGIKPGLDHYSCMVDLLGRAGL 574

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           LE+A DLI+ M   P+  +WG+LLG+CRVH N+ +   AAE  +K+EP  +  ++ L N+
Sbjct: 575 LEEAWDLIQTMSIPPNAVIWGSLLGSCRVHGNISIGIQAAEHRLKLEPGCAATHIQLANL 634

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           YA +G W D   VR+ MK+  +K   G SW++
Sbjct: 635 YATIGCWSDVARVRMAMKARGLKTNIGCSWIE 666



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 118/315 (37%), Positives = 187/315 (59%), Gaps = 19/315 (6%)

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFK 288
           +R  F+  T + G            L VK+    T+   +++++ Y++   LE +   F+
Sbjct: 25  DRQMFTQGTQLHG------------LLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQ 72

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            MP KN VSW +MI+G   +   E  + LF  M +   KP+  TF+++ S+ +    L L
Sbjct: 73  TMPTKNTVSWTAMISGFALHNRVEPCLHLFASMMLSSCKPNDITFATLFSVCTKHALLAL 132

Query: 349 GMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G  +H +  +      V ++NAL++MYA+CG I EA+ IF  +   K++VSWNA+I GC+
Sbjct: 133 GRSVHALQMRMGFHSYVHVSNALLSMYAKCGCIEEAQFIFGCIA-CKDLVSWNAIIFGCS 191

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
            +  A   L+L K M    ++P  ++F+ VLS+C HA LVEEGR  FK+M+ E+GI+P +
Sbjct: 192 QYVLAKHCLDLLKEMERQHIVPDALSFLGVLSSCRHARLVEEGRHCFKTMI-EHGIKPGL 250

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
           +H++ +VD++GR G LE+A DLI+ M   P+  +WG+LLG+CRVH N+ +   AAE  +K
Sbjct: 251 DHYSCMVDLLGRAGLLEEAWDLIQTMSIPPNAVIWGSLLGSCRVHGNISIGIQAAEHRLK 310

Query: 528 VEP---ENSTPYVLL 539
           +EP   E ST   +L
Sbjct: 311 LEPGKGETSTDQSIL 325



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 134/505 (26%), Positives = 226/505 (44%), Gaps = 57/505 (11%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PG 119
           +++I+ Y++  ++E +  +F +MP +N VSW AMISGF  +  V   +  F  M      
Sbjct: 52  SSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISGFALHNRVEPCLHLFASMMLSSCK 111

Query: 120 RDSASLSALVS-----GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
            +  + + L S      L+  G    A ++ +       G    V   N L+  Y + G 
Sbjct: 112 PNDITFATLFSVCTKHALLALGRSVHALQMRM-------GFHSYVHVSNALLSMYAKCGC 164

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM-C--YAKAGDVVS-AREIFEQMLE 230
           +EEA+ +F  I              +++VSWN++I  C  Y  A   +   +E+  Q + 
Sbjct: 165 IEEAQFIFGCIAC------------KDLVSWNAIIFGCSQYVLAKHCLDLLKEMERQHIV 212

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDF 286
            D  S+  ++S   H   +EE  + F  M      P    ++ MV    + G LE A D 
Sbjct: 213 PDALSFLGVLSSCRHARLVEEGRHCFKTMIEHGIKPGLDHYSCMVDLLGRAGLLEEAWDL 272

Query: 287 FKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQ-----MQVEGEKPDRHTFSSILSMS 340
            + M    N V W S++  C  +    G I + IQ     +++E  K +  T  SIL+ +
Sbjct: 273 IQTMSIPPNAVIWGSLLGSCRVH----GNISIGIQAAEHRLKLEPGKGETSTDQSILAAA 328

Query: 341 -SGIVDLHL---GMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
            S   D  +   G Q+H ++ K      V I ++LIT+Y+RC  +  + ++F+ M   KN
Sbjct: 329 MSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMP-TKN 387

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
            VSW AMI G A H      L LF SMR     P  ITF ++ S C +  L+  G+    
Sbjct: 388 TVSWTAMISGFALHNRVEPCLHLFASMRLSSCKPNDITFATLFSVCTNHALLALGKS-VH 446

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
           ++    G    +    +L+ +  + G +++A   I G     D   W A++  C   +  
Sbjct: 447 ALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQS-IFGFIACKDLVSWNAMIFGC---SQY 502

Query: 516 ELAQVAAEALMKVEPENSTPYVLLY 540
            LA+   + L ++E ++  P  L +
Sbjct: 503 GLAKHCLDLLKEMERQHIVPDALSF 527


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 163/459 (35%), Positives = 269/459 (58%), Gaps = 23/459 (5%)

Query: 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK 184
           L   V+G+ QNG+L++ + +L +  +      D  +  +       +   +   RK+F+ 
Sbjct: 97  LDERVAGIDQNGDLNQMSNILYQVNTY-KKVFDEGKTSDVYSKKEKESYYLGSLRKVFEM 155

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG----DVVSAREIFEQMLERDTFSWNTMI 240
           +P            KR+IVSWN++I   A+ G     ++  RE+    L  D+F+ ++++
Sbjct: 156 MP------------KRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVL 203

Query: 241 ---SGYIHVLDMEEASNLFVKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
              + Y+++L  +E     ++  +  D    ++++  YA+   ++ +   F  +PQ + +
Sbjct: 204 PIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGI 263

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SWNS+IAGC  N  ++  +K F QM +   KP+  +FSSI+   + +  LHLG Q+H  +
Sbjct: 264 SWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYI 323

Query: 357 TKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            ++    +V I +AL+ MYA+CG I  AR IF++M+L  ++VSW AMI G A HG A +A
Sbjct: 324 IRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALHGHAYDA 382

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           + LFK M    V P Y+ F++VL+AC+HAGLV+E  ++F SM  +Y I P +EH+A++ D
Sbjct: 383 ISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVAD 442

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++GR GRLE+A + I  M  EP  +VW  LL ACRVH N+ELA+  ++ L  V+P+N   
Sbjct: 443 LLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGA 502

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           YVLL N+Y+  GRW DA ++R+ M+   +KK    SW++
Sbjct: 503 YVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIE 541



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 179/439 (40%), Gaps = 69/439 (15%)

Query: 15  RKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTG 74
           +K+FDE    DV S           + S +L   R +F++MP+RD V+WNTVISG A+ G
Sbjct: 124 KKVFDEGKTSDVYS--------KKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNG 175

Query: 75  EMEEALRLFNSMPARNVVSWNAMISGFLQ------NGDVANAIEFFDRMPGRDSASL--S 126
             E+AL +   M   ++   +  +S  L       N      I  +    G D+     S
Sbjct: 176 MHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGS 235

Query: 127 ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
           +L+    +   +D++ RV        DG      ++N++I G  Q G  +E  K F ++ 
Sbjct: 236 SLIDMYAKCTRVDDSCRVFYMLPQH-DG-----ISWNSIIAGCVQNGMFDEGLKFFQQML 289

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE----IFEQMLERDTFSWNTMISG 242
           +         + K N VS++S++   A    +   ++    I     + + F  + ++  
Sbjct: 290 I--------AKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDM 341

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
           Y    ++  A  +F KM   D ++W AM+ GYA  G+   A+  FKR             
Sbjct: 342 YAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKR------------- 388

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTV 360
                             M+VEG KP+   F ++L+  S  G+VD              +
Sbjct: 389 ------------------MEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRI 430

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
           IP +    A+  +  R G + EA     +M +      W+ ++  C  H     A ++ K
Sbjct: 431 IPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSK 490

Query: 421 SMRSFKVLPTYITFISVLS 439
            +  F V P  I    +LS
Sbjct: 491 KL--FTVDPQNIGAYVLLS 507



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 161/360 (44%), Gaps = 70/360 (19%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISG------------YISSRGSGFLEEARY-LFDIMP- 56
           +   RK+F+ MP+RD+VSWN +ISG             +   G+  L    + L  ++P 
Sbjct: 146 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPI 205

Query: 57  ----------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
                                 + D    +++I  YAK   ++++ R+F  +P  + +SW
Sbjct: 206 FAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISW 265

Query: 95  NAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDEAARV---LVK 147
           N++I+G +QNG     ++FF +M       +  S S+++        L    ++   +++
Sbjct: 266 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 325

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
             SR DG   +  A   L+  Y + G +  AR +FDK+ +             ++VSW +
Sbjct: 326 --SRFDGNVFIASA---LVDMYAKCGNIRTARWIFDKMEL------------YDMVSWTA 368

Query: 208 MIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-- 261
           MIM YA  G    A  +F++M    ++ +  ++  +++   H   ++EA   F  M    
Sbjct: 369 MIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDY 428

Query: 262 ---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYEGAIKL 317
              P    + A+     ++G LE A +F   M  +   S W++++A C  +K+ E A K+
Sbjct: 429 RIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKV 488



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 92/234 (39%), Gaps = 55/234 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------- 53
           +I  Y K   +  + ++F  +PQ D +SWN +I+G +    +G  +E    F        
Sbjct: 237 LIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQ---NGMFDEGLKFFQQMLIAKI 293

Query: 54  ---------IMPERDCVTWNTVISG-------------------------YAKTGEMEEA 79
                    IMP   C    T+  G                         YAK G +  A
Sbjct: 294 KPNHVSFSSIMPA--CAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTA 351

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQN 135
             +F+ M   ++VSW AMI G+  +G   +AI  F RM       +  +  A+++     
Sbjct: 352 RWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHA 411

Query: 136 GELDEAARVL--VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV 187
           G +DEA +    +    R   G +   A   L+   G+ GR+EEA +    + +
Sbjct: 412 GLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLL---GRVGRLEEAYEFISDMHI 462



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 16/191 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y K   +  AR +FD+M   D+VSW  MI GY      G   +A  LF  M     
Sbjct: 338 LVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYAL---HGHAYDAISLFKRMEVEGV 394

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV-----SWNAMISGFLQNGDVANAI 111
           + + V +  V++  +  G ++EA + FNSM     +      + A+     + G +  A 
Sbjct: 395 KPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAY 454

Query: 112 EFFDRMPGRDSASL-SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG 170
           EF   M    + S+ S L++    +  ++ A +V  K  +        + AY  L   Y 
Sbjct: 455 EFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTV---DPQNIGAYVLLSNIYS 511

Query: 171 QRGRVEEARKL 181
             GR ++ARKL
Sbjct: 512 AAGRWKDARKL 522


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 177/536 (33%), Positives = 292/536 (54%), Gaps = 45/536 (8%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA-- 123
           +++ YAK G ME+A R+F++M  RNVV+W  ++ GF+QN    +AI  F  M    S   
Sbjct: 108 LVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPS 167

Query: 124 --SLSALVSGL--IQNGEL-DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
             +LSA++     +Q+ +L D+    ++K     D         + L   Y + GR+E+A
Sbjct: 168 VYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVG-----SALCSLYSKCGRLEDA 222

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----F 234
            K F +I             ++N++SW S +   A  G  V    +F +M+  D     F
Sbjct: 223 LKTFSRIR------------EKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEF 270

Query: 235 SWNTMISGYIHVLDME---EASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRM 290
           +  + +S    +L +E   +  +L +K  +   L   N+++  Y + G +  A   F RM
Sbjct: 271 TLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRM 330

Query: 291 PQKNLVSWNSMIAG----CETNKD-----YEG--AIKLFIQMQVEGEKPDRHTFSSILSM 339
              ++V+WN+MIAG     E  KD     + G  A+KLF ++ + G KPD  T SS+LS+
Sbjct: 331 DDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSV 390

Query: 340 SSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            S ++ +  G QIH    KT  + DV ++ +LI+MY++CG+I  A   F EM   + +++
Sbjct: 391 CSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMST-RTMIA 449

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           W +MI G + HG + +AL +F+ M    V P  +TF+ VLSAC+HAG+V +   +F+ M 
Sbjct: 450 WTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQ 509

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            +Y I+P ++H+  +VD+  R GRLE A++ IK M +EP + +W   +  C+ H N+EL 
Sbjct: 510 KKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCKSHGNLELG 569

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             AAE L+ ++P++   YVLL NMY    R++D + VR +M+   + K   +SW+ 
Sbjct: 570 FYAAEQLLSLKPKDPETYVLLLNMYLSAERFEDVSRVRKMMEEEKVGKLKDWSWIS 625



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 114/463 (24%), Positives = 199/463 (42%), Gaps = 95/463 (20%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM- 259
           N    + ++  YAK G++  AR +F+ ML R+  +W T++ G++     + A ++F +M 
Sbjct: 101 NFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEML 160

Query: 260 ---PHPDTLTW-----------------------------------NAMVSGYAQIGNLE 281
               +P   T                                    +A+ S Y++ G LE
Sbjct: 161 YAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLE 220

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            AL  F R+ +KN++SW S ++ C  N      ++LF++M     KP+  T +S LS   
Sbjct: 221 DALKTFSRIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCC 280

Query: 342 GIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            I+ L LG Q++ +  K     ++ + N+L+ +Y + G IVEA  +F  M    ++V+WN
Sbjct: 281 EILSLELGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMD-DASMVTWN 339

Query: 401 AMIGG------------CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
           AMI G             A H   +EAL+LF  +    + P   T  SVLS C+    +E
Sbjct: 340 AMIAGHAQMMELTKDNLSACHR-GSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIE 398

Query: 449 EGRQ-HFK--------------SMVNEYGIEPRIEH---------------FASLVDIVG 478
           +G Q H +              S+++ Y     IE                + S++    
Sbjct: 399 QGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFS 458

Query: 479 RHGRLEDAMDLIKGMPF---EPDKAVWGALLGACRVHNNVELAQVAAEALM---KVEPEN 532
           +HG  + A+ + + M      P+   +  +L AC     V  A    E +    K++P  
Sbjct: 459 QHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAM 518

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
              Y  + +M+  +GR + A  +  + K N   +P+ + W +F
Sbjct: 519 D-HYECMVDMFVRLGRLEQA--LNFIKKMN--YEPSEFIWSNF 556



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/472 (22%), Positives = 208/472 (44%), Gaps = 77/472 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           +++ Y K   M  AR++FD M +R+VV+W  ++ G++ +                     
Sbjct: 108 LVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPS 167

Query: 40  --------RGSGFLEEAR-------YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
                        L+  +       Y+     + D    + + S Y+K G +E+AL+ F+
Sbjct: 168 VYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFS 227

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNGELDE 140
            +  +NV+SW + +S    NG     +  F  M   D      +L++ +S   +   L+ 
Sbjct: 228 RIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLEL 287

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +V   C     G E  +R  N+L+  Y + G + EA +LF+++               
Sbjct: 288 GTQVYSLCIKF--GYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMD------------DA 333

Query: 201 NIVSWNSMIMCYAKAGDVVS-----------AREIFEQM----LERDTFSWNTMISGYIH 245
           ++V+WN+MI  +A+  ++             A ++F ++    ++ D F+ ++++S    
Sbjct: 334 SMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSR 393

Query: 246 VLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           +L +E+   +  +        D +   +++S Y++ G++E A   F  M  + +++W SM
Sbjct: 394 MLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSM 453

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLG-MQIHQMVTK 358
           I G   +   + A+ +F  M + G +P+  TF  +LS  S  G+V   L   +I Q   K
Sbjct: 454 ITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYK 513

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            + P +     ++ M+ R G + +A    ++M    +   W+  I GC SHG
Sbjct: 514 -IKPAMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCKSHG 564



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 139/285 (48%), Gaps = 15/285 (5%)

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           + +Q L+  ++S   ++ G  HV+      N FV          + +V+ YA+ GN+E A
Sbjct: 73  LLQQCLDTRSYSETQIVHG--HVMKTGCHDNFFV---------MSFLVNVYAKCGNMEDA 121

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F  M ++N+V+W +++ G   N   + AI +F +M   G  P  +T S++L   S +
Sbjct: 122 RRVFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSL 181

Query: 344 VDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             L LG Q H  + K  +  D  + +AL ++Y++CG + +A   F  ++  KNV+SW + 
Sbjct: 182 QSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIR-EKNVISWTSA 240

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           +  CA +G   + L LF  M +  + P   T  S LS C     +E G Q + S+  ++G
Sbjct: 241 VSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVY-SLCIKFG 299

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
            E  +    SL+ +  + G + +A  L   M  +     W A++ 
Sbjct: 300 YESNLRVRNSLLYLYLKSGCIVEAHRLFNRMD-DASMVTWNAMIA 343



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 140/323 (43%), Gaps = 71/323 (21%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEM-----------EEALRLFNSMPARN 90
           SG + EA  LF+ M +   VTWN +I+G+A+  E+            EAL+LF+ +    
Sbjct: 317 SGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFSKLN--- 373

Query: 91  VVSWNAMISGFLQN-GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
                  +SG   +   +++ +    RM               I+ GE   A    +K G
Sbjct: 374 -------LSGMKPDLFTLSSVLSVCSRMLA-------------IEQGEQIHAQT--IKTG 411

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
              D     V    +LI  Y + G +E A K F ++              R +++W SMI
Sbjct: 412 FLSD-----VIVSTSLISMYSKCGSIERASKAFLEMST------------RTMIAWTSMI 454

Query: 210 MCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMP----- 260
             +++ G    A  IFE M    +  +  ++  ++S   H   + +A N F  M      
Sbjct: 455 TGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKI 514

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRM---PQKNLVSWNSMIAGCETNKDYEGAIKL 317
            P    +  MV  + ++G LE AL+F K+M   P + +  W++ IAGC+++ + E  +  
Sbjct: 515 KPAMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFI--WSNFIAGCKSHGNLE--LGF 570

Query: 318 FIQMQVEGEKP-DRHTFSSILSM 339
           +   Q+   KP D  T+  +L+M
Sbjct: 571 YAAEQLLSLKPKDPETYVLLLNM 593



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 13/149 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +IS Y K   + +A K F EM  R +++W  MI+G+      G  ++A ++F+ M     
Sbjct: 422 LISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGF---SQHGMSQQALHIFEDMSLAGV 478

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
             + VT+  V+S  +  G + +AL  F  M  +  +      +  M+  F++ G +  A+
Sbjct: 479 RPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQAL 538

Query: 112 EFFDRMPGRDSASL-SALVSGLIQNGELD 139
            F  +M    S  + S  ++G   +G L+
Sbjct: 539 NFIKKMNYEPSEFIWSNFIAGCKSHGNLE 567


>gi|356518523|ref|XP_003527928.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Glycine max]
          Length = 686

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 196/660 (29%), Positives = 312/660 (47%), Gaps = 106/660 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +IS Y K      AR LFDEMP R++VS+  M+S + +   SG   EA  L++ M E   
Sbjct: 44  IISVYAKCSRFDDARTLFDEMPHRNIVSFTTMVSAFTN---SGRPHEALTLYNHMLESKT 100

Query: 59  --------------------------------------DCVTWNTVISGYAKTGEMEEAL 80
                                                 D V  N ++  Y K G + +A 
Sbjct: 101 VQPNQFLYSAVLKACGLVGDVELGMLVHQHVSEARLEFDTVLMNALLDMYVKCGSLMDAK 160

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN----- 135
           R+F+ +P +N  SWN +I G  + G + +A   FD+MP  D  S +++++GL  N     
Sbjct: 161 RVFHEIPCKNSTSWNTLILGHAKQGLMRDAFNLFDQMPEPDLVSWNSIIAGLADNASPHA 220

Query: 136 -----------------------------GELDEAARV---LVKCGSRCDGGEDLVRAYN 163
                                        GEL    ++   ++K G  C          +
Sbjct: 221 LQFLSMMHGKGLKLDAFTFPCALKACGLLGELTMGRQIHCCIIKSGLECS-----CYCIS 275

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
           +LI  Y     ++EA K+FDK          N     ++  WNSM+  Y   GD   A  
Sbjct: 276 SLIDMYSNCKLLDEAMKIFDK----------NSPLAESLAVWNSMLSGYVANGDWWRALG 325

Query: 224 IFEQM----LERDTFSWNTMISGYIHVLDMEEASN----LFVKMPHPDTLTWNAMVSGYA 275
           +   M     + D+++++  +   I+  ++  AS     +  +    D +  + ++  YA
Sbjct: 326 MIACMHHSGAQFDSYTFSIALKVCIYFDNLRLASQVHGLIITRGYELDHVVGSILIDLYA 385

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           + GN+  AL  F+R+P K++V+W+S+I GC           LF+ M     + D    S 
Sbjct: 386 KQGNINSALRLFERLPNKDVVAWSSLIVGCARLGLGTLVFSLFMDMVHLDLEIDHFVLSI 445

Query: 336 ILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +L +SS +  L  G QIH   + K    +  I  AL  MYA+CG I +A  +F+ +  + 
Sbjct: 446 VLKVSSSLASLQSGKQIHSFCLKKGYESERVITTALTDMYAKCGEIEDALALFDCLYEI- 504

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           + +SW  +I GCA +G A +A+ +   M      P  IT + VL+AC HAGLVEE    F
Sbjct: 505 DTMSWTGIIVGCAQNGRADKAISILHKMIESGTKPNKITILGVLTACRHAGLVEEAWTIF 564

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           KS+  E+G+ P  EH+  +VDI  + GR ++A +LI  MPF+PDK +W +LL AC  + N
Sbjct: 565 KSIETEHGLTPCPEHYNCMVDIFAKAGRFKEARNLINDMPFKPDKTIWCSLLDACGTYKN 624

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             LA + AE L+   PE+++ Y++L N+YA +G WD+ ++VR  ++   IK   G SW++
Sbjct: 625 RHLANIVAEHLLATSPEDASVYIMLSNVYASLGMWDNLSKVREAVRKVGIKG-AGKSWIE 683



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 133/315 (42%), Gaps = 64/315 (20%)

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           I +  L    F  N++IS Y      ++A  LF +MPH + +++  MVS +   G    A
Sbjct: 29  IIKLGLSNHIFLLNSIISVYAKCSRFDDARTLFDEMPHRNIVSFTTMVSAFTNSGRPHEA 88

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
           L  +  M +   V                              +P++  +S++L     +
Sbjct: 89  LTLYNHMLESKTV------------------------------QPNQFLYSAVLKACGLV 118

Query: 344 VDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
            D+ LGM +HQ V++  +  D  + NAL+ MY +CG++++A+ +F E+   KN  SWN +
Sbjct: 119 GDVELGMLVHQHVSEARLEFDTVLMNALLDMYVKCGSLMDAKRVFHEIP-CKNSTSWNTL 177

Query: 403 IGGCASHGFATEALELFKSMRSFKVL--------------PTYITFISV----------- 437
           I G A  G   +A  LF  M    ++              P  + F+S+           
Sbjct: 178 ILGHAKQGLMRDAFNLFDQMPEPDLVSWNSIIAGLADNASPHALQFLSMMHGKGLKLDAF 237

Query: 438 -----LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI-K 491
                L AC   G +  GRQ     + + G+E      +SL+D+      L++AM +  K
Sbjct: 238 TFPCALKACGLLGELTMGRQ-IHCCIIKSGLECSCYCISSLIDMYSNCKLLDEAMKIFDK 296

Query: 492 GMPFEPDKAVWGALL 506
             P     AVW ++L
Sbjct: 297 NSPLAESLAVWNSML 311



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 148/387 (38%), Gaps = 80/387 (20%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
              +I   NS+I  YAK      AR +F++M  R+  S+ TM+S + +     EA  L+ 
Sbjct: 34  LSNHIFLLNSIISVYAKCSRFDDARTLFDEMPHRNIVSFTTMVSAFTNSGRPHEALTLYN 93

Query: 258 KMPHP----------------------------------------DTLTWNAMVSGYAQI 277
            M                                           DT+  NA++  Y + 
Sbjct: 94  HMLESKTVQPNQFLYSAVLKACGLVGDVELGMLVHQHVSEARLEFDTVLMNALLDMYVKC 153

Query: 278 GNLELALDFFKRMPQKN-------------------------------LVSWNSMIAGCE 306
           G+L  A   F  +P KN                               LVSWNS+IAG  
Sbjct: 154 GSLMDAKRVFHEIPCKNSTSWNTLILGHAKQGLMRDAFNLFDQMPEPDLVSWNSIIAGLA 213

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVP 365
            N     A++    M  +G K D  TF   L     + +L +G QIH  + K+ +     
Sbjct: 214 DNAS-PHALQFLSMMHGKGLKLDAFTFPCALKACGLLGELTMGRQIHCCIIKSGLECSCY 272

Query: 366 INNALITMYARCGAIVEARIIFEE-MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
             ++LI MY+ C  + EA  IF++   L +++  WN+M+ G  ++G    AL +   M  
Sbjct: 273 CISSLIDMYSNCKLLDEAMKIFDKNSPLAESLAVWNSMLSGYVANGDWWRALGMIACMHH 332

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS--LVDIVGRHGR 482
                   TF   L  C +   +    Q    ++   G E  ++H     L+D+  + G 
Sbjct: 333 SGAQFDSYTFSIALKVCIYFDNLRLASQ-VHGLIITRGYE--LDHVVGSILIDLYAKQGN 389

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGAC 509
           +  A+ L + +P   D   W +L+  C
Sbjct: 390 INSALRLFERLP-NKDVVAWSSLIVGC 415


>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
 gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 177/530 (33%), Positives = 283/530 (53%), Gaps = 27/530 (5%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           + D      +++ YA+ GE++ A +LF  +  R++V+W+A+I+ F+Q+G    A+  F  
Sbjct: 20  DSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQSGYPQEALSLFRS 79

Query: 117 MPGRD-SASLSALVSGLIQNGELD--EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           M      A+   L+S L    E+   +  + +  C  + +   D +     L+  Y + G
Sbjct: 80  MQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLD-ISVGTALVSMYAKCG 138

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----L 229
               A  LF+++P             +++V+WN+MI  YA+ G+   A E+F ++    L
Sbjct: 139 FFALALTLFNRMPC------------KDVVTWNAMINGYAQIGEPFPALEMFHKLQLSEL 186

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALD 285
             ++ +   ++  +  + D+++ S +  K+       +     A++  YA+ G+L  A  
Sbjct: 187 NPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEF 246

Query: 286 FFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
            F R   +K+ VSWN MIAG   +     A   F QM++E  +P+  T  ++L   + + 
Sbjct: 247 LFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLS 306

Query: 345 DLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
            L  GM +H  V +       P+ N LI MYA+CG +  +  IF EMK  K+ VSWN M+
Sbjct: 307 ALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKN-KDTVSWNVML 365

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
            G A HG  + A+ELF  M+  ++     +FI+VLSAC HAGL+ EGR+ F SM  ++ +
Sbjct: 366 AGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKIFDSMSKQHQL 425

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE 523
           EP +EH+A + D++GR G   + +DLIK MP EPD  VWGALLGA  +H+NV+LA+ A  
Sbjct: 426 EPDLEHYACMADLLGRAGLFNEVLDLIKSMPMEPDAGVWGALLGASTMHSNVQLAEFALH 485

Query: 524 ALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            L K+E +N T Y  L N YA  GRW D    R  +    ++K  GYSWV
Sbjct: 486 HLDKLEHKNLTHYAALSNTYARSGRWADVGNTRSKITKTGLRKSPGYSWV 535



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 116/465 (24%), Positives = 199/465 (42%), Gaps = 75/465 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +++ Y +  E+  A++LF E+  RD+V+W+ +I+ ++    SG+ +EA  LF  M     
Sbjct: 29  IMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQ---SGYPQEALSLFRSMQNEGL 85

Query: 57  -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                                              + D      ++S YAK G    AL 
Sbjct: 86  QANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYAKCGFFALALT 145

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGE 137
           LFN MP ++VV+WNAMI+G+ Q G+   A+E F ++       +S ++  L+       +
Sbjct: 146 LFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAFALLND 205

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           LD+ + +   ++KCG      E        LI  Y + G +  A  LF +    C + E 
Sbjct: 206 LDQGSCIHGKIIKCGF-----ESECHVKTALIDMYAKCGSLSGAEFLFHR--TGCRKDE- 257

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDME 250
                   VSWN MI  Y  +G  + A   F QM    ++ +  +  T++    H+  + 
Sbjct: 258 --------VSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALR 309

Query: 251 EASNL---FVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
               L    ++M     T   N ++  YA+ G L+ +   F  M  K+ VSWN M+AG  
Sbjct: 310 AGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYA 369

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDV 364
            +     AI+LF +MQ    + D  +F ++LS       +  G +I   ++K   + PD+
Sbjct: 370 VHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKIFDSMSKQHQLEPDL 429

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
                +  +  R G   E   + + M +  +   W A++G    H
Sbjct: 430 EHYACMADLLGRAGLFNEVLDLIKSMPMEPDAGVWGALLGASTMH 474


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 176/551 (31%), Positives = 291/551 (52%), Gaps = 60/551 (10%)

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------------- 117
           +++ E++   R+   +   NV SWNA I G++++GD+      + RM             
Sbjct: 102 SESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTY 161

Query: 118 -------PGRDSASL--------------------SALVSGLIQNGELDEAARVLVKCGS 150
                   G+ S+ L                    +A ++ L+  GEL  A  V  K   
Sbjct: 162 PLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRV 221

Query: 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
           R     DLV  +N++I G  +RG   EA K++ ++           + + N ++   MI 
Sbjct: 222 R-----DLV-TWNSMITGCVKRGLAIEAIKIYKEMEAE--------KVRPNEITMIGMIS 267

Query: 211 CYAKAGDVVSARE----IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT 266
             ++  D+   +E    I E  LE      N ++  Y+   ++  A  LF  M     ++
Sbjct: 268 SCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVS 327

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
           W  MV GYA+ G L++A +   ++P+K++V WN++I+GC   K  + A+ LF +MQ+   
Sbjct: 328 WTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTI 387

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARI 385
           +PD+ T  + LS  S +  L +G+ IH  + +  +  DV +  AL+ MYA+CG I  A  
Sbjct: 388 EPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQ 447

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +FEE+   +N ++W A+I G A HG A +AL  F  M    ++P  ITF+ VLSAC H G
Sbjct: 448 VFEEIPQ-RNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGG 506

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           LVEEGR++F  M +++ + P+++H++ +VD++GR G LE+A +L+K MP   D AV GAL
Sbjct: 507 LVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGAL 566

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
             ACRV+ NV++ +  A  L++++P++S  YVLL +MY++   W +A   R LM    ++
Sbjct: 567 FFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVE 626

Query: 566 KPTGYSWVDFS 576
           K  G S V+ +
Sbjct: 627 KTPGCSLVEIN 637



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 114/487 (23%), Positives = 198/487 (40%), Gaps = 98/487 (20%)

Query: 7   KRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG--SGFLEEARYLF--DIMP------ 56
           + +E+    ++   + + +V SWN  I GY+ S     GF+   R L    + P      
Sbjct: 103 ESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYP 162

Query: 57  ---------------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
                                      E D    N  I+     GE+  A  +FN    R
Sbjct: 163 LLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVR 222

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVL 145
           ++V+WN+MI+G ++ G    AI+ +  M       +  ++  ++S   Q  +L+      
Sbjct: 223 DLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKE-- 280

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
             C  +  G E  +   N L+  Y + G +  AR LFD +             ++ +VSW
Sbjct: 281 FHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMA------------QKTLVSW 328

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----H 261
            +M++ YA+ G +  AREI  ++ E+    WN +ISG +     +EA  LF +M      
Sbjct: 329 TTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIE 388

Query: 262 PDTLT------------------W-----------------NAMVSGYAQIGNLELALDF 286
           PD +T                  W                  A+V  YA+ GN+  AL  
Sbjct: 389 PDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQV 448

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIV 344
           F+ +PQ+N ++W ++I G   + + + A+  F +M   G  PD  TF  +LS     G+V
Sbjct: 449 FEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLV 508

Query: 345 DLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           +        +M +K  V P +   + ++ +  R G + EA  + + M +  +     A+ 
Sbjct: 509 E-EGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALF 567

Query: 404 GGCASHG 410
             C  +G
Sbjct: 568 FACRVYG 574



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 115/263 (43%), Gaps = 51/263 (19%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           YVK  E+  AR LFD M Q+ +VSW  M+ GY      GFL+ AR +   +PE+  V WN
Sbjct: 304 YVKCGELLTARVLFDNMAQKTLVSWTTMVLGYAR---FGFLDVAREILYKIPEKSVVPWN 360

Query: 65  TVISGYAKTGEMEEALRLFNSMPAR----------------------------------- 89
            +ISG  +  + +EAL LF+ M  R                                   
Sbjct: 361 AIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERH 420

Query: 90  ----NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
               +V    A++  + + G++A A++ F+ +P R+  + +A++ GL  +G   +A    
Sbjct: 421 KLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYF 480

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
            K        +++   +  ++      G VEE RK F ++       + NV  K  +  +
Sbjct: 481 SKMIHIGIVPDEI--TFLGVLSACCHGGLVEEGRKYFSEM-----SSKFNVSPK--LKHY 531

Query: 206 NSMIMCYAKAGDVVSAREIFEQM 228
           + M+    +AG +  A E+ + M
Sbjct: 532 SCMVDLLGRAGHLEEAEELVKNM 554



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 102/233 (43%), Gaps = 47/233 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           M+ GY +   +  AR++  ++P++ VV WN +ISG + ++     +EA  LF  M     
Sbjct: 331 MVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQG---KEALALFHEMQIRTI 387

Query: 57  ERDCVTWNTVISG-----------------------------------YAKTGEMEEALR 81
           E D VT    +S                                    YAK G +  AL+
Sbjct: 388 EPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQ 447

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGE 137
           +F  +P RN ++W A+I G   +G+  +A+ +F +M       D  +   ++S     G 
Sbjct: 448 VFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGL 507

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           ++E  +   +  S+ +    L + Y+ ++   G+ G +EEA +L   +P+  D
Sbjct: 508 VEEGRKYFSEMSSKFNVSPKL-KHYSCMVDLLGRAGHLEEAEELVKNMPMAAD 559


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 198/624 (31%), Positives = 309/624 (49%), Gaps = 81/624 (12%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER------------ 58
           +A AR++FDE+P+ D VSWN +++ ++++   G   +A  L   M  R            
Sbjct: 45  LAAARRVFDEIPRPDAVSWNSLLAAHVAA---GAHRDAWRLLKDMHARGLTASTFALGSA 101

Query: 59  ---------------------------DCVTWNTVISGYAKTGEMEEALRLFNSMPARNV 91
                                      +  + + ++  YAK G + +A R+F+ MP RN 
Sbjct: 102 LRSAAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNT 161

Query: 92  VSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSAL---VSGLIQNGELDEAARV 144
           VSWNA+I+G+ ++   A A+E F  M       D A+ +AL   V G      + +    
Sbjct: 162 VSWNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATVEGPSWYSLMQQLHGK 221

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
           + K GS        +   N  I  Y Q G   ++R++FD I              R+++S
Sbjct: 222 IAKYGSALG-----LVVLNAAITAYSQCGAFADSRRIFDGIQ------------SRDLIS 264

Query: 205 WNSMIMCYAKAGDVVSAREIFEQML-----ERDTFSWNTMIS-GYIHVLDMEEA---SNL 255
           WNSM+  YA  G    A   F +M+     + D +S+ +++S    H  D  +     +L
Sbjct: 265 WNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSEHGCDDRQGRSIHSL 324

Query: 256 FVKMPHPD-TLTWNAMVSGYAQIGN---LELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
            VK+     T   NAM++ Y +      +E A   F  +  K+ VSWNSM+ G   +   
Sbjct: 325 VVKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKDAVSWNSMLTGYSHHGLS 384

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNAL 370
             A++ F  M+ E    D    S+ L   S +  L LG Q+H +V ++       ++++L
Sbjct: 385 SDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQVHSLVIQSGFSSNDFVSSSL 444

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           I MY++CG + +AR  FEE     + V WN+M+ G A HG A    +LF  M   KV   
Sbjct: 445 IFMYSKCGMVGDARKSFEEADK-GSSVPWNSMMFGYAQHGQAQTVTDLFSEMLDHKVPLD 503

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
           ++TF+++L+A +H GLV+EG +   SM   Y I  R+EH+A  VD+ GR G+L+ A +LI
Sbjct: 504 HVTFVALLTAYSHGGLVDEGSEILNSMETRYKIPLRMEHYACGVDLYGRAGQLDKAKELI 563

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           + MPF+PD  VW  LLGACR+H N+ELA   A  L   EP   + YVLL +MY+  G W 
Sbjct: 564 ESMPFQPDAMVWMTLLGACRIHGNMELASDVASHLFVAEPRQHSTYVLLSSMYSGRGMWS 623

Query: 551 DANEVRLLMKSNNIKKPTGYSWVD 574
           D   V+ +MK+  + K  G+SW++
Sbjct: 624 DRATVQKVMKNRGLSKVPGWSWIE 647



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 137/546 (25%), Positives = 248/546 (45%), Gaps = 67/546 (12%)

Query: 29  WNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPA 88
           WN +++ Y +S     L  AR +FD +P  D V+WN++++ +   G   +A RL   M A
Sbjct: 29  WNQLLTAYSASGPGSGLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHA 88

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC 148
           R + +    +   L++   A   E   ++         A+ SGL+ N             
Sbjct: 89  RGLTASTFALGSALRSAAAARRPELGAQLQS------FAVKSGLVDN------------- 129

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
                     V + + L+  Y + GR+ +AR++FD +PV            RN VSWN++
Sbjct: 130 ----------VFSASALLDVYAKCGRLSDARRVFDGMPV------------RNTVSWNAL 167

Query: 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD-------MEEASNLFVKMPH 261
           I  YA++     A E+F +M   +    +   +  +  ++       M++      K   
Sbjct: 168 IAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATVEGPSWYSLMQQLHGKIAKYGS 227

Query: 262 PDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
              L   NA ++ Y+Q G    +   F  +  ++L+SWNSM+     +   + A++ F++
Sbjct: 228 ALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVR 287

Query: 321 MQVE-GEKPDRHTFSSILSM-SSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYAR- 376
           M  E G +PD ++F+S++S+ S    D   G  IH +V K  +  V  + NA+I MY R 
Sbjct: 288 MMRESGVQPDMYSFTSVVSVCSEHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRF 347

Query: 377 ---CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
              C  + +A   F+ + + K+ VSWN+M+ G + HG +++AL  F+ MR+  V      
Sbjct: 348 TENC-MMEDAYKCFDSL-VFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFA 405

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
             + L +C+   ++  GRQ   S+V + G        +SL+ +  + G + DA    +  
Sbjct: 406 LSAALRSCSDLAVLRLGRQ-VHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFE-- 462

Query: 494 PFEPDKAV---WGALLGACRVHNNVE-LAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
             E DK     W +++     H   + +  + +E L    P +   +V L   Y+  G  
Sbjct: 463 --EADKGSSVPWNSMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLV 520

Query: 550 DDANEV 555
           D+ +E+
Sbjct: 521 DEGSEI 526



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 116/474 (24%), Positives = 203/474 (42%), Gaps = 95/474 (20%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-----FLEEARYLFDIMPERD 59
           Y K   ++ AR++FD MP R+ VSWN +I+GY  SR        FLE  R   +++P+  
Sbjct: 140 YAKCGRLSDARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQR--VELVPDDA 197

Query: 60  C---------------------------------VTWNTVISGYAKTGEMEEALRLFNSM 86
                                             V  N  I+ Y++ G   ++ R+F+ +
Sbjct: 198 TFAALLATVEGPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGI 257

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELDEA 141
            +R+++SWN+M+  +  +G    A+ FF RM        D  S +++VS   ++G  D  
Sbjct: 258 QSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSEHGCDDRQ 317

Query: 142 AR----VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
            R    ++VK G   +G   +  A   +   + +   +E+A K FD +            
Sbjct: 318 GRSIHSLVVKIG--LEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVF---------- 365

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG----------- 242
             ++ VSWNSM+  Y+  G    A   F  M    +  D F+ +  +             
Sbjct: 366 --KDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGR 423

Query: 243 YIHVLDMEE--ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
            +H L ++   +SN FV          ++++  Y++ G +  A   F+   + + V WNS
Sbjct: 424 QVHSLVIQSGFSSNDFVS---------SSLIFMYSKCGMVGDARKSFEEADKGSSVPWNS 474

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQI-HQMVT 357
           M+ G   +   +    LF +M       D  TF ++L+  S  G+VD   G +I + M T
Sbjct: 475 MMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVD--EGSEILNSMET 532

Query: 358 KTVIPDVPINNAL-ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +  IP    + A  + +Y R G + +A+ + E M    + + W  ++G C  HG
Sbjct: 533 RYKIPLRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLLGACRIHG 586


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 174/535 (32%), Positives = 302/535 (56%), Gaps = 38/535 (7%)

Query: 57  ERDCVTWNTVISGYAKTG-EMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
           E D    N++++ Y K G +  E  ++F+ +  ++V+SW +MISG+++ G   N++E F 
Sbjct: 91  EFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFW 150

Query: 116 RMPGR----DSASLSALVSGLIQNGELDEAARVL--VKCGSRCDGGEDLVRAYNTLIVGY 169
           +M       ++ +LSA++    + G+L +  R+   V  G   D    +  A   LI  +
Sbjct: 151 KMLAYGVEPNAFTLSAVIKACSELGDL-KLGRIFHGVVLGRGFDSNYVIASA---LIDMH 206

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM- 228
           G+   +++AR+LFD++             + + + W S+I    +      A   F  M 
Sbjct: 207 GRNCALDDARQLFDEL------------LEPDAICWTSIISALTRNDFFDEALRFFYSMQ 254

Query: 229 ----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNL 280
               +  D F++ T+++   ++  +++   +  K+       + +  +++V  Y + G++
Sbjct: 255 RDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSV 314

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
             +   F RMP KN VSW++++ G   N D++  I++F +M    EK D + F +IL   
Sbjct: 315 GESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKM----EKVDLYCFGTILRTC 370

Query: 341 SGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           +G+  +  G ++H Q + K    DV + +AL+ +YA+CG I  A+ IF++M + +N+++W
Sbjct: 371 AGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPV-RNLITW 429

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N+MIGG A +G   EAL +F  M    + P YI+FI +L AC+H GLV+EGR++F SM  
Sbjct: 430 NSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTK 489

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
           +YGI+  IEH++ +VD++GR G LE+A  LI+   F  D ++W ALLGAC    N E+A+
Sbjct: 490 DYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAE 549

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             A+ +M++EP+    YVLL N+Y  VGRW+DA  +R LMK   + K  G SW++
Sbjct: 550 RIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIE 604



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 213/447 (47%), Gaps = 63/447 (14%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYIS-SRGSGFLEEARYLFDIMPERDCVTWNTVIS 68
           +  + RK+FD +  +DV+SW  MISGY+   +    LE    +     E +  T + VI 
Sbjct: 110 DFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIK 169

Query: 69  GYAKTGEMEEALRLFNSMPA-----RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
             ++ G+++   R+F+ +        N V  +A+I    +N  + +A + FD +   D+ 
Sbjct: 170 ACSELGDLKLG-RIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAI 228

Query: 124 SLSALVSGLIQNGELDEAAR--------------------VLVKCGS--RCDGGEDL--- 158
             ++++S L +N   DEA R                    VL  CG+  R   G+++   
Sbjct: 229 CWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAK 288

Query: 159 ---------VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
                    V   ++L+  YG+ G V E++++FD++P+            +N VSW++++
Sbjct: 289 VITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPI------------KNSVSWSALL 336

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMI---SGYIHVLDMEEASNLFV-KMPHPDTL 265
             Y + GD  S  +IF +M + D + + T++   +G   V   +E    ++ K    D +
Sbjct: 337 GGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVI 396

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
             +A+V  YA+ G +E A   F +MP +NL++WNSMI G   N   E A+++F QM  EG
Sbjct: 397 VESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEG 456

Query: 326 EKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINN--ALITMYARCGAIV 381
            KPD  +F  IL   S  G+VD   G +    +TK     V I +   ++ +  R G + 
Sbjct: 457 IKPDYISFIGILFACSHRGLVD--EGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLE 514

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCAS 408
           EA I+ E      +   W A++G C +
Sbjct: 515 EAEILIETSDFRDDSSLWAALLGACTT 541



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 145/366 (39%), Gaps = 93/366 (25%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP----------------- 87
           L++AR LFD + E D + W ++IS   +    +EALR F SM                  
Sbjct: 212 LDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLT 271

Query: 88  -----------------------ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
                                    NVV  ++++  + + G V  +   FDRMP ++S S
Sbjct: 272 ACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVS 331

Query: 125 LSALVSGLIQNGELDEAARVL-----------------------------VKCGSRCDGG 155
            SAL+ G  QNG+     ++                              V C     GG
Sbjct: 332 WSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGG 391

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
              V   + L+  Y + G +E A+ +FD++PV            RN+++WNSMI  +A+ 
Sbjct: 392 WRDVIVESALVDLYAKCGCIEYAQTIFDQMPV------------RNLITWNSMIGGFAQN 439

Query: 216 GDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT----- 266
           G    A  IF QM++     D  S+  ++    H   ++E    F+ M     +      
Sbjct: 440 GRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEH 499

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           ++ MV    + G LE A    +    ++  S W +++  C T  +YE A +  I  +V  
Sbjct: 500 YSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAER--IAKRVME 557

Query: 326 EKPDRH 331
            +PD H
Sbjct: 558 LEPDYH 563



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 97/178 (54%), Gaps = 5/178 (2%)

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGA-IVEARIIFEEM 390
           ++S+L   + ++  + G+QIH  V K+ +  D  + N+L+T+Y + G    E R +F+ +
Sbjct: 62  YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGL 121

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
             +K+V+SW +MI G    G    +LELF  M ++ V P   T  +V+ AC+  G ++ G
Sbjct: 122 -FVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLG 180

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           R  F  +V   G +      ++L+D+ GR+  L+DA  L   +  EPD   W +++ A
Sbjct: 181 RI-FHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDEL-LEPDAICWTSIISA 236



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 97/219 (44%), Gaps = 37/219 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           ++  Y K   + +++++FD MP ++ VSW+ ++ GY  +                     
Sbjct: 304 LVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCF 363

Query: 40  ----RGSGFLEEARYLFDIMPE-------RDCVTWNTVISGYAKTGEMEEALRLFNSMPA 88
               R    L   R   ++  +       RD +  + ++  YAK G +E A  +F+ MP 
Sbjct: 364 GTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPV 423

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV 144
           RN+++WN+MI GF QNG    A+  F++M       D  S   ++      G +DE    
Sbjct: 424 RNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREY 483

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
            +   ++  G +  +  Y+ ++   G+ G +EEA  L +
Sbjct: 484 FISM-TKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIE 521



 Score = 42.4 bits (98), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++  Y K   +  A+ +FD+MP R++++WN MI G+ +  G G  EEA  +F+ M +   
Sbjct: 401 LVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGF-AQNGRG--EEALRIFNQMVKEGI 457

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
             D +++  ++   +  G ++E    F SM         +  ++ M+    + G +  A 
Sbjct: 458 KPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAE 517

Query: 112 EFFDRMPGRDSASLSALVSG 131
              +    RD +SL A + G
Sbjct: 518 ILIETSDFRDDSSLWAALLG 537


>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
          Length = 626

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 157/416 (37%), Positives = 243/416 (58%), Gaps = 16/416 (3%)

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           V ++N++I  Y   G    A +LF+ +P            +RN+VSWN+++  +A+ GD+
Sbjct: 174 VVSWNSIIGVYMSSGDYTGAMELFEAMP------------ERNVVSWNTLVAGFARVGDM 221

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP-DTLTWNAMVSGYAQI 277
           V+A+ +F++M  R+  SWN MISGY    D+E A ++F +M    D ++W AMVS YA+I
Sbjct: 222 VTAQTVFDRMPSRNAISWNLMISGYASSGDVEAARSMFDRMDQKKDVVSWTAMVSAYAKI 281

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSI 336
           G+L+ A + F  MP KNLVSWN+MI G   N  Y  A++ F  M +EG  +PD  T  S+
Sbjct: 282 GDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSV 341

Query: 337 LSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           +S  + +  +     I   + K+ V   + + NALI M+A+CG +  A+ IF EMK  + 
Sbjct: 342 VSACAQLGSVEYCNWISSFIRKSNVHLTIALGNALIDMFAKCGDVGRAQSIFYEMKT-RC 400

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           +++W  MI G A +G   EAL ++ +M    V    + FI+ L+AC H GL++EG   F 
Sbjct: 401 IITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAALAACVHGGLLQEGWSIFN 460

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
            MV +Y I+PR+EH+  +VD++GR G L++A+  I+ MP EP   +W  LL +C  H N 
Sbjct: 461 EMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAVLFIESMPLEPSVVIWATLLSSCVAHGNA 520

Query: 516 ELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           E     ++ + ++EP NS+  VL+ N  A  GRWD     R +M++  I+K  G S
Sbjct: 521 EFIDYVSKKITELEPFNSSYQVLVSNSSALEGRWDGVIGARTIMRNWGIEKVPGSS 576



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 202/399 (50%), Gaps = 28/399 (7%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           +V   N ++  Y    G G +  AR +FD M +RD V+WN++I  Y  +G+   A+ LF 
Sbjct: 139 EVFVQNTLLDVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFE 198

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
           +MP RNVVSWN +++GF + GD+  A   FDRMP R++ S + ++SG   +G++ EAAR 
Sbjct: 199 AMPERNVVSWNTLVAGFARVGDMVTAQTVFDRMPSRNAISWNLMISGYASSGDV-EAARS 257

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
           +     R D  +D+V ++  ++  Y + G ++ A++LFD +P+            +N+VS
Sbjct: 258 MFD---RMDQKKDVV-SWTAMVSAYAKIGDLDTAKELFDHMPL------------KNLVS 301

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTF-----SWNTMISGYIHVLDMEEAS--NLFV 257
           WN+MI  Y        A   F+ M+    F     +  +++S    +  +E  +  + F+
Sbjct: 302 WNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFI 361

Query: 258 KMP--HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           +    H      NA++  +A+ G++  A   F  M  + +++W +MI+G   N     A+
Sbjct: 362 RKSNVHLTIALGNALIDMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGFAFNGLCREAL 421

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI-HQMVTK-TVIPDVPINNALITM 373
            ++  M  EG + D   F + L+       L  G  I ++MV +  + P +     ++ +
Sbjct: 422 LVYNNMCREGVELDDMVFIAALAACVHGGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDL 481

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
             R G + EA +  E M L  +VV W  ++  C +HG A
Sbjct: 482 LGRAGNLQEAVLFIESMPLEPSVVIWATLLSSCVAHGNA 520



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 193/403 (47%), Gaps = 81/403 (20%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGY 70
           +A AR++FDEM  RDVVSWN +I  Y+S   SG    A  LF+ MPER+ V+WNT+++G+
Sbjct: 159 VAAARQVFDEMVDRDVVSWNSIIGVYMS---SGDYTGAMELFEAMPERNVVSWNTLVAGF 215

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM-PGRDSASLSALV 129
           A+ G+M  A  +F+ MP+RN +SWN MISG+  +GDV  A   FDRM   +D  S +A+V
Sbjct: 216 ARVGDMVTAQTVFDRMPSRNAISWNLMISGYASSGDVEAARSMFDRMDQKKDVVSWTAMV 275

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI---- 185
           S   + G+LD A  +      +     +LV ++N +I GY    R  EA + F  +    
Sbjct: 276 SAYAKIGDLDTAKELFDHMPLK-----NLV-SWNAMITGYNHNSRYGEALRTFQLMMLEG 329

Query: 186 -----------PVNCDRGEGNVRFKRNIVSW-------------NSMIMCYAKAGDVVSA 221
                       V+     G+V +   I S+             N++I  +AK GDV  A
Sbjct: 330 RFRPDEATLVSVVSACAQLGSVEYCNWISSFIRKSNVHLTIALGNALIDMFAKCGDVGRA 389

Query: 222 REIFEQMLERDTFSWNTMISGY-----------------------------------IHV 246
           + IF +M  R   +W TMISG+                                   +H 
Sbjct: 390 QSIFYEMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAALAACVHG 449

Query: 247 LDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNS 300
             ++E  ++F +M       P    +  +V    + GNL+ A+ F + MP + ++V W +
Sbjct: 450 GLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAVLFIESMPLEPSVVIWAT 509

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
           +++ C  + + E     ++  ++   +P   ++  ++S SS +
Sbjct: 510 LLSSCVAHGNAE--FIDYVSKKITELEPFNSSYQVLVSNSSAL 550



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 144/326 (44%), Gaps = 50/326 (15%)

Query: 296 VSWNSMI---AGCETNKDYEG-AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           VS N++I   AG   ++     A+  +  M   G  P+  TF+ +L   + +        
Sbjct: 67  VSHNTLIERLAGARGHRPVPADALAAYTAMLAAGVPPNGFTFTFLLRACALLGFPRPCRC 126

Query: 352 IH-QMVTKTVIPDVPINNALITMYARCGA---IVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           +H Q+V      +V + N L+ +Y RCG    +  AR +F+EM + ++VVSWN++IG   
Sbjct: 127 VHGQIVRWGFGSEVFVQNTLLDVYYRCGGPGRVAAARQVFDEM-VDRDVVSWNSIIGVYM 185

Query: 408 SHGFATEALELFKSMRS-------------------------FKVLPT--YITFISVLSA 440
           S G  T A+ELF++M                           F  +P+   I++  ++S 
Sbjct: 186 SSGDYTGAMELFEAMPERNVVSWNTLVAGFARVGDMVTAQTVFDRMPSRNAISWNLMISG 245

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
            A +G VE  R  F  M      +  +  + ++V    + G L+ A +L   MP + +  
Sbjct: 246 YASSGDVEAARSMFDRMDQ----KKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLK-NLV 300

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVE----PENSTPYVLLYNMYADVGRWDDANEVR 556
            W A++     HN+     +    LM +E    P+ +T  V + +  A +G  +  N + 
Sbjct: 301 SWNAMITGYN-HNSRYGEALRTFQLMMLEGRFRPDEAT-LVSVVSACAQLGSVEYCNWIS 358

Query: 557 LLMKSNNIKKPT--GYSWVD-FSPCG 579
             ++ +N+      G + +D F+ CG
Sbjct: 359 SFIRKSNVHLTIALGNALIDMFAKCG 384


>gi|326517559|dbj|BAK03698.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 529

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 165/428 (38%), Positives = 244/428 (57%), Gaps = 17/428 (3%)

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
           +R      L+ + N+L+    + G +  AR LFD++PV            R++VSWNSM+
Sbjct: 112 ARGRAPHSLLVSRNSLLASLLRSGDLPAARALFDQMPV------------RDVVSWNSMV 159

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA 269
              AKAG +  A E+F+QM ER+  SWN +I G I    +  A  +F +MP    ++W  
Sbjct: 160 AGLAKAGRLDRAIELFDQMPERNAASWNAVICGLIAHGHLTRAREMFEQMPVRSNISWIT 219

Query: 270 MVSGYAQIGNLELALDFFKRMPQKN-LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-- 326
           M+SGYA+ G+++ A   F+RM  KN L +WN+MIA    N     AI +F +M       
Sbjct: 220 MISGYAKAGDVQAAAGLFERMENKNDLYAWNAMIACYAQNGCAREAIGVFNRMLKPHVCV 279

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARI 385
            P+  TFSS+ S  S + +L  G+ +   MV+  +  D  +  AL+ +Y + G I  A  
Sbjct: 280 LPNEKTFSSVTSACSQLGNLRFGLWVQSFMVSLGIELDDHLRTALVDLYTKSGQIDRAFD 339

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F+ +   ++VVS++AMI GC  +G   EA+ LF  M    +LP  ++F+ +LSA  HAG
Sbjct: 340 LFKGLSK-RDVVSYSAMIVGCGMNGKLNEAIGLFNEMSDANILPNAVSFVGLLSAYNHAG 398

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           LVEE R  F SM ++Y I P +EH+  +VD++GR G+L++A  LI  MP +P  +VWGAL
Sbjct: 399 LVEEARACFTSMSSKYKIRPSMEHYTIMVDLLGRSGKLDEAFQLIMQMPMQPRASVWGAL 458

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           L +CR+HNNVEL +V A    +  P  S  Y+LL N+YA   +WD    +R  MK   + 
Sbjct: 459 LLSCRLHNNVELGEVIASKCFEQAPGESGYYILLGNIYASANKWDKVRRLRKTMKERCLS 518

Query: 566 KPTGYSWV 573
           K  G SWV
Sbjct: 519 KMPGSSWV 526



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 173/367 (47%), Gaps = 55/367 (14%)

Query: 4   GYVKRREMAKARKLFDEMP-------QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP 56
            ++  R+   AR L DE P          +VS N +++  + S   G L  AR LFD MP
Sbjct: 92  AHLYSRDPVAARSLLDETPPARGRAPHSLLVSRNSLLASLLRS---GDLPAARALFDQMP 148

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
            RD V+WN++++G AK G ++ A+ LF+ MP RN  SWNA+I G + +G +  A E F++
Sbjct: 149 VRDVVSWNSMVAGLAKAGRLDRAIELFDQMPERNAASWNAVICGLIAHGHLTRAREMFEQ 208

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           MP R + S   ++SG  + G++  AA +      R +   DL  A+N +I  Y Q G   
Sbjct: 209 MPVRSNISWITMISGYAKAGDVQAAAGLF----ERMENKNDLY-AWNAMIACYAQNGCAR 263

Query: 177 EA-----------------RKLFDKIPVNCDRGEGNVRFKRNIVSW-------------N 206
           EA                  K F  +   C +  GN+RF   + S+              
Sbjct: 264 EAIGVFNRMLKPHVCVLPNEKTFSSVTSACSQ-LGNLRFGLWVQSFMVSLGIELDDHLRT 322

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----P 262
           +++  Y K+G +  A ++F+ + +RD  S++ MI G      + EA  LF +M      P
Sbjct: 323 ALVDLYTKSGQIDRAFDLFKGLSKRDVVSYSAMIVGCGMNGKLNEAIGLFNEMSDANILP 382

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQK-----NLVSWNSMIAGCETNKDYEGAIKL 317
           + +++  ++S Y   G +E A   F  M  K     ++  +  M+     +   + A +L
Sbjct: 383 NAVSFVGLLSAYNHAGLVEEARACFTSMSSKYKIRPSMEHYTIMVDLLGRSGKLDEAFQL 442

Query: 318 FIQMQVE 324
            +QM ++
Sbjct: 443 IMQMPMQ 449



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 17/166 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++  Y K  ++ +A  LF  + +RDVVS++ MI G      +G L EA  LF+ M +   
Sbjct: 324 LVDLYTKSGQIDRAFDLFKGLSKRDVVSYSAMIVG---CGMNGKLNEAIGLFNEMSDANI 380

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV-----SWNAMISGFLQNGDVANAI 111
             + V++  ++S Y   G +EEA   F SM ++  +      +  M+    ++G +  A 
Sbjct: 381 LPNAVSFVGLLSAYNHAGLVEEARACFTSMSSKYKIRPSMEHYTIMVDLLGRSGKLDEAF 440

Query: 112 EFFDRMPGRDSASL--SALVSGLIQNG-ELDEAARVLVKCGSRCDG 154
           +   +MP +  AS+  + L+S  + N  EL E   +  KC  +  G
Sbjct: 441 QLIMQMPMQPRASVWGALLLSCRLHNNVELGEV--IASKCFEQAPG 484


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 190/531 (35%), Positives = 283/531 (53%), Gaps = 39/531 (7%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +++ YAK G + +A R+F  M  ++ VSWN+MI+G  QNG    A+E +  M   +  
Sbjct: 73  NGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSMRRHEIL 132

Query: 124 SLS-ALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKL 181
             S  L+S L     L  A       G     G DL V   N L+  Y + G + E RK+
Sbjct: 133 PGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKI 192

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE------------QML 229
           F  +P            + + VSWNS+I   A      S R + E            Q L
Sbjct: 193 FSSMP------------EHDQVSWNSIIGALAS-----SERSLPEAVACFLNALRAGQKL 235

Query: 230 ERDTFSWNTMISGYIHVLDM-EEASNLFVKMPHPD-TLTWNAMVSGYAQIGNLELALDFF 287
            R TFS        +   ++ ++   L +K    D   T NA+++ Y + G ++     F
Sbjct: 236 NRITFSSVLSAVSSLSFGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIF 295

Query: 288 KRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
            RM ++ + V+WNSMI+G   N+    A+ L   M   G++ D   ++++LS  + +  L
Sbjct: 296 SRMSERRDDVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATL 355

Query: 347 HLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             GM++H    +  +  DV + +AL+ MY++CG +  A   F  M + +N  SWN+MI G
Sbjct: 356 ERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPV-RNSYSWNSMISG 414

Query: 406 CASHGFATEALELFKSMR-SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
            A HG   EAL+LF +M+   +  P ++TF+ VLSAC+HAGL+EEG +HF+SM + YG+ 
Sbjct: 415 YARHGQGEEALKLFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLA 474

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN--NVELAQVAA 522
           PRIEHF+ + D++GR G L+   D I  MP +P+  +W  +LGAC   N    EL + AA
Sbjct: 475 PRIEHFSCMADLLGRAGELDKLEDFIDKMPVKPNVLIWRTVLGACCRANGRKAELGKKAA 534

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           E L ++EPEN+  YVLL NMYA  GRW+D  + R  MK  ++KK  GYSWV
Sbjct: 535 EMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWV 585



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 204/470 (43%), Gaps = 87/470 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------------YISSRGSGFLEE 47
           +++ Y K   +A AR++F  M ++D VSWN MI+G             Y S R    L  
Sbjct: 75  LVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSMRRHEILPG 134

Query: 48  ARYLFDIMPERDCVTW-----------------------NTVISGYAKTGEMEEALRLFN 84
           +  L   +     + W                       N +++ YA+TG + E  ++F+
Sbjct: 135 SFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFS 194

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN--------- 135
           SMP  + VSWN++I G L + + +        +P   +  L+AL +G   N         
Sbjct: 195 SMPEHDQVSWNSII-GALASSERS--------LPEAVACFLNALRAGQKLNRITFSSVLS 245

Query: 136 -------GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
                  GEL +    L    +  D         N LI  YG+ G ++   K+F ++   
Sbjct: 246 AVSSLSFGELGKQIHGLALKYNIADEAT----TENALIACYGKCGEMDGCEKIFSRMSE- 300

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYI 244
                     +R+ V+WNSMI  Y     +  A ++   ML+     D+F + T++S + 
Sbjct: 301 ----------RRDDVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFA 350

Query: 245 HVLDMEEASNLFV----KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
            V  +E    +           D +  +A+V  Y++ G L+ AL FF  MP +N  SWNS
Sbjct: 351 SVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNS 410

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRH-TFSSILSMSSGIVDLHLGMQIHQMVTKT 359
           MI+G   +   E A+KLF  M+++G+ P  H TF  +LS  S    L  G +  + ++ +
Sbjct: 411 MISGYARHGQGEEALKLFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDS 470

Query: 360 --VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
             + P +   + +  +  R G + +     ++M +  NV+ W  ++G C 
Sbjct: 471 YGLAPRIEHFSCMADLLGRAGELDKLEDFIDKMPVKPNVLIWRTVLGACC 520



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 95/168 (56%), Gaps = 7/168 (4%)

Query: 344 VDLHLGMQIHQMVTKTVIPD--VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           V L  G ++H  V  T + D  V I N L+ MYA+CG+I +AR +F  M + K+ VSWN+
Sbjct: 47  VGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFM-MEKDSVSWNS 105

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNE 460
           MI G   +G   EA+E ++SMR  ++LP   T IS LS+CA     + G+Q H +S+  +
Sbjct: 106 MITGLDQNGCFIEAVERYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESL--K 163

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
            GI+  +    +L+ +    G L +   +   MP E D+  W +++GA
Sbjct: 164 LGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSIIGA 210



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 136/339 (40%), Gaps = 87/339 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR-DVVSWNVMISGYISSRGSG--------FLEEARYL 51
           +I+ Y K  EM    K+F  M +R D V+WN MISGYI +             L+  + L
Sbjct: 278 LIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWFMLQTGQRL 337

Query: 52  FDIMP----------------------------ERDCVTWNTVISGYAKTGEMEEALRLF 83
              M                             E D V  + ++  Y+K G ++ ALR F
Sbjct: 338 DSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFF 397

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFF-----DRMPGRDSASLSALVSGLIQNGEL 138
           N+MP RN  SWN+MISG+ ++G    A++ F     D     D  +   ++S     G L
Sbjct: 398 NTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLDGQTPPDHVTFVGVLSACSHAGLL 457

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN---------- 188
           +E  +   +  S   G    +  ++ +    G+ G +++     DK+PV           
Sbjct: 458 EEGFKHF-ESMSDSYGLAPRIEHFSCMADLLGRAGELDKLEDFIDKMPVKPNVLIWRTVL 516

Query: 189 --CDRGEG----------NVRFK---RNIVSWNSMIMCYAKAG---DVVSAREIFEQMLE 230
             C R  G           + F+    N V++  +   YA  G   D+V AR   ++M +
Sbjct: 517 GACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKAR---KKMKD 573

Query: 231 RDT-----FSWNTMISGYIHVLDMEEASNLFVKMPHPDT 264
            D      +SW TM  G +H+    + S       HPDT
Sbjct: 574 ADVKKEAGYSWVTMKDG-VHMFVAGDKS-------HPDT 604


>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
          Length = 690

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 183/564 (32%), Positives = 285/564 (50%), Gaps = 72/564 (12%)

Query: 23  QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEE 78
           Q +   WN +I  +  S G     EA  +F++M E     D  +++ V+   ++ G ++E
Sbjct: 140 QDNPFLWNAIIKSF--SHGED-PXEAFXIFNLMLENGVCVDKFSFSLVLKACSRLGLIKE 196

Query: 79  ALRLFNSMP----ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQ 134
            +++   +       +V   N ++  +L+ G +  A + FDRM  RDS S          
Sbjct: 197 GMQIHGLLGXMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVS---------- 246

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
                                      +N++I GY + G V+ AR+LFD +P+       
Sbjct: 247 ---------------------------FNSMIDGYVKHGMVKSARELFDVMPME------ 273

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQMLERDTFSWNTMISGYIHVLDMEEAS 253
               ++N++SWNSMI  YA++ + +  A E+FE+M +RD  SWN+MI G +    ME A 
Sbjct: 274 ----QKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAH 329

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
           +LF  MP  D ++W  MV GYA++G +++A   F  MP+++++S N+M+AG   N     
Sbjct: 330 HLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGXLME 389

Query: 314 AIKLFIQMQVEGEK-PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALI 371
           A+  F  M    E  P   T    LS  + +     G+ +H  +          +  ALI
Sbjct: 390 ALXFFHDMLSXKELFPXNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGXALI 449

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            MYA+CG+I  A I             WNA+J G A HG    A ELF  M    V P  
Sbjct: 450 DMYAKCGSIDNALI-----------DHWNAIJXGLAIHGLGEVAFELFMEMEKLFVKPBD 498

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           ITFI VL+AC HAGLV+EG   F  M   + +EP+++H+  +VDI+GR G +E+    ++
Sbjct: 499 ITFIGVLNACNHAGLVKEGLMXFXLMRXVHKVEPKLQHYGCMVDILGRAGHVEEXKKFVE 558

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
            MP EP+  VW  LL ACR H N  + +  A+ L+ V+  N + YVLL N+YA  G W+D
Sbjct: 559 KMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVLLSNIYAXFGMWND 618

Query: 552 ANEVRLLMKSNNIKKPTGYSWVDF 575
              +R++MK  ++KK  G S ++ 
Sbjct: 619 VYRIRMMMKQRDLKKIPGCSQIEL 642



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 195/424 (45%), Gaps = 86/424 (20%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ERDCVT 62
           Y++   +  AR+LFD M  RD VS+N MI GY+     G ++ AR LFD+MP  +++ ++
Sbjct: 223 YLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVK---HGMVKSARELFDVMPMEQKNLIS 279

Query: 63  WNTVISGYAKTGE-MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           WN++ISGYA++ E +  A  LF  MP R+++SWN+MI G ++ G + NA   F+ MP RD
Sbjct: 280 WNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNXMPKRD 339

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S + +V G                                     Y + G ++ AR L
Sbjct: 340 VVSWANMVDG-------------------------------------YAKLGEIDIARGL 362

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE-RDTFSWNT-- 238
           FD++P            +R+++S N+M+  Y + G ++ A   F  ML  ++ F  N   
Sbjct: 363 FDEMP------------ERDVISCNAMMAGYVQNGXLMEALXFFHDMLSXKELFPXNATL 410

Query: 239 --MISGYIHVLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
              +S    +   +E   L   +             A++  YA+ G+++ AL        
Sbjct: 411 LITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGXALIDMYAKCGSIDNAL-------- 462

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS-------MSSGIVD 345
             +  WN++J G   +   E A +LF++M+    KPB  TF  +L+       +  G++ 
Sbjct: 463 --IDHWNAIJXGLAIHGLGEVAFELFMEMEKLFVKPBDITFIGVLNACNHAGLVKEGLMX 520

Query: 346 LHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             L   +H+     V P +     ++ +  R G + E +   E+M +  N V W  ++  
Sbjct: 521 FXLMRXVHK-----VEPKLQHYGCMVDILGRAGHVEEXKKFVEKMPIEPNDVVWRTLLSA 575

Query: 406 CASH 409
           C +H
Sbjct: 576 CRNH 579



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 167/344 (48%), Gaps = 44/344 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMP--QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           MI GYVK   +  AR+LFD MP  Q++++SWN MISGY  +R    L  A  LF+ MP+R
Sbjct: 250 MIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGY--ARSEEGLRVAWELFEEMPKR 307

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D ++WN++I G  K G+ME A  LFN MP R+VVSW  M+ G+ + G++  A   FD MP
Sbjct: 308 DLISWNSMIDGCVKCGKMENAHHLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMP 367

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV---GYGQRGRV 175
            RD  S +A+++G +QNG L EA        S     ++L     TL++      Q G  
Sbjct: 368 ERDVISCNAMMAGYVQNGXLMEALXFFHDMLSX----KELFPXNATLLITLSAIAQLGHF 423

Query: 176 EEARKLFDKIPVN------------------CDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
           +E   L   I  N                  C   +  +     I  WN++J   A  G 
Sbjct: 424 DEGVALHCYIEDNGFSLSEKLGXALIDMYAKCGSIDNAL-----IDHWNAIJXGLAIHGL 478

Query: 218 VVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWN 268
              A E+F +M    ++ B  ++  +++   H   ++E    F  M       P    + 
Sbjct: 479 GEVAFELFMEMEKLFVKPBDITFIGVLNACNHAGLVKEGLMXFXLMRXVHKVEPKLQHYG 538

Query: 269 AMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDY 311
            MV    + G++E    F ++MP + N V W ++++ C  ++++
Sbjct: 539 CMVDILGRAGHVEEXKKFVEKMPIEPNDVVWRTLLSACRNHENF 582


>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g15300-like [Glycine max]
          Length = 555

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 153/379 (40%), Positives = 231/379 (60%), Gaps = 5/379 (1%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  N+V  N++++ +AK GD+  A +IF+   + D  +W+ +I+GY    D+  A  LF 
Sbjct: 138 FGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFD 197

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           +MP  D ++WN M++ Y + G +E A   F   P K++VSWN+M+ G   +   + A++L
Sbjct: 198 EMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALEL 257

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP--INNALITMYA 375
           F +M   GE PD  T  S+LS  + + D   G ++H  + +     +   + NAL+ MYA
Sbjct: 258 FDEMCEVGECPDEVTMLSLLSACADLGDX--GEKVHAKIMELNKGKLSTLLGNALVDMYA 315

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +CG I +   +F  ++  K++VSWN++IGG A HG A E+L LF+ M+  KV P  ITF+
Sbjct: 316 KCGNIGKGVCVFWLIRD-KDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFV 374

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
            VL+AC+H G V+EG ++F  M N+Y IEP I H   +VD++ R G L++A D I  M  
Sbjct: 375 GVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMKI 434

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           EP+  VW +LLGAC+VH +VELA+ A E L+++  + S  YVLL N+YA  G WD A  V
Sbjct: 435 EPNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVDQSGDYVLLSNVYASHGEWDGAENV 494

Query: 556 RLLMKSNNIKKPTGYSWVD 574
           R LM  N + K  G S+V+
Sbjct: 495 RKLMDDNGVTKTRGSSFVE 513



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 144/540 (26%), Positives = 241/540 (44%), Gaps = 68/540 (12%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DCVTWNTVISG 69
           A ++F ++PQ D   WN  I G   S        A  L+  M  R    D  T+  V+  
Sbjct: 60  AVQMFAQIPQPDTFMWNTYIRGSSQSHDP---VHAVALYAQMTHRSVKPDNFTFPLVLKA 116

Query: 70  YAK-----TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
             K     TG +    R+F      NVV  N ++    + GD+  A + FD     D  +
Sbjct: 117 CTKLFWVNTGSVVHG-RVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVA 175

Query: 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK 184
            SAL++G  Q G+L  A ++  +   R     DLV ++N +I  Y + G +E AR+LFD+
Sbjct: 176 WSALIAGYAQRGDLSVARKLFDEMPKR-----DLV-SWNVMITAYTKHGEMECARRLFDE 229

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMI 240
            P+            +++VSWN+M+  Y        A E+F++M E     D  +  +++
Sbjct: 230 APM------------KDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLL 277

Query: 241 SGYIHVLDMEE---ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           S    + D  E   A  + +      TL  NA+V  YA+ GN+   +  F  +  K++VS
Sbjct: 278 SACADLGDXGEKVHAKIMELNKGKLSTLLGNALVDMYAKCGNIGKGVCVFWLIRDKDMVS 337

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ-IHQMV 356
           WNS+I G   +   E ++ LF +MQ     PD  TF  +L+  S   ++  G +  + M 
Sbjct: 338 WNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFVGVLAACSHTGNVDEGNRYFYLMK 397

Query: 357 TKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG---FA 412
            K  I P++     ++ M AR G + EA      MK+  N + W +++G C  HG    A
Sbjct: 398 NKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMKIEPNAIVWRSLLGACKVHGDVELA 457

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI-EPRIEHFA 471
             A E    MR  +    Y+   +V ++        +G ++ + ++++ G+ + R   F 
Sbjct: 458 KRATEQLLRMRVDQS-GDYVLLSNVYASHGEW----DGAENVRKLMDDNGVTKTRGSSF- 511

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
                             ++    EP+      LLGAC V+ +VELA+   E L+++  +
Sbjct: 512 ------------------VEAYRIEPNPVNGRTLLGACIVYGDVELAKRVNEELLRLRRD 553



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 164/337 (48%), Gaps = 35/337 (10%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           + K  ++  A  +FD+  + DVV+W+ +I+GY + RG   L  AR LFD MP+RD V+WN
Sbjct: 152 HAKCGDLKVANDIFDDSDKGDVVAWSALIAGY-AQRGD--LSVARKLFDEMPKRDLVSWN 208

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGR 120
            +I+ Y K GEME A RLF+  P ++VVSWNAM+ G++ +     A+E FD M       
Sbjct: 209 VMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGECP 268

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  ++ +L+S     G+  E     +      + G+      N L+  Y + G + +   
Sbjct: 269 DEVTMLSLLSACADLGDXGEKVHAKIM---ELNKGKLSTLLGNALVDMYAKCGNIGKGVC 325

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSW 236
           +F  I              +++VSWNS+I   A  G    +  +F +M       D  ++
Sbjct: 326 VFWLIR------------DKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITF 373

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
             +++   H  +++E +  F  M +     P+      +V   A+ G L+ A DF   M 
Sbjct: 374 VGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMK 433

Query: 292 -QKNLVSWNSMIAGCETNKDYE---GAIKLFIQMQVE 324
            + N + W S++  C+ + D E    A +  ++M+V+
Sbjct: 434 IEPNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVD 470



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 147/365 (40%), Gaps = 72/365 (19%)

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           +MV   A     + A+  F ++PQ +   WN+ I G   + D   A+ L+ QM     KP
Sbjct: 46  SMVGPAATTAVTQYAVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKP 105

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCG--------- 378
           D  TF  +L   + +  ++ G  +H  V +     +V + N L+  +A+CG         
Sbjct: 106 DNFTFPLVLKACTKLFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIF 165

Query: 379 ------------AIVE----------ARIIFEEMKLLKNVVSW----------------- 399
                       A++           AR +F+EM   +++VSW                 
Sbjct: 166 DDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMP-KRDLVSWNVMITAYTKHGEMECAR 224

Query: 400 --------------NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
                         NAM+GG   H    EALELF  M      P  +T +S+LSACA  G
Sbjct: 225 RLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLLSACADLG 284

Query: 446 LVEEGRQHFKSM-VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
              E + H K M +N+  +   + +  +LVD+  + G +   +  +  +  + D   W +
Sbjct: 285 DXGE-KVHAKIMELNKGKLSTLLGN--ALVDMYAKCGNIGKGV-CVFWLIRDKDMVSWNS 340

Query: 505 LLGACRVHNNVE--LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
           ++G    H + E  L         KV P+  T +V +    +  G  D+ N    LMK+ 
Sbjct: 341 VIGGLAFHGHAEESLGLFREMQRTKVCPDEIT-FVGVLAACSHTGNVDEGNRYFYLMKNK 399

Query: 563 NIKKP 567
              +P
Sbjct: 400 YKIEP 404


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 154/420 (36%), Positives = 249/420 (59%), Gaps = 17/420 (4%)

Query: 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
           ++N +I GY ++G   EA K   ++      G G    K +  +   +++C  + GD   
Sbjct: 195 SFNIMIFGYAKKGHNIEALKFLHEMV-----GLG---LKPDEFTMLGLLICCGRLGDAQL 246

Query: 221 AREIFEQMLERDTFSW------NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
            + +   +  R           N ++  Y+   ++  A ++F  +   DT++WN M++GY
Sbjct: 247 GKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGY 306

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
           A++GNLE+A +FF+ MP ++LVSWNS+IAG     D     +LF  M  E   PD  T  
Sbjct: 307 AKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTII 366

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLL 393
           +++S ++ I  LH G  IH  V +  +  D  + +A I MY +CG+I  A ++F E+   
Sbjct: 367 NLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTE- 425

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           K+V  W  MI G A HG+ ++AL+LF  M+ + V+P  +TF++VL+AC+H+G V +G + 
Sbjct: 426 KDVTVWTTMITGFAFHGYGSKALQLFYEMQEY-VMPNQVTFVAVLTACSHSGFVSQGLRI 484

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
           F SM   YGIEP +EH+  LVD++GR GR  +  D+I+ MP +P +++WGA+L ACR + 
Sbjct: 485 FNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYG 544

Query: 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           N+E+A++A + L+K+EPE    YVLL N+YA  GRW  ++++R +M+S  +KK  G S V
Sbjct: 545 NIEIAEIAGKELLKLEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSV 604



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 172/394 (43%), Gaps = 62/394 (15%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR--- 120
           NT++  Y +  +M  A ++F  M A + VS+N MI G+ + G    A++F   M G    
Sbjct: 166 NTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLK 225

Query: 121 -DSASLSALV--SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
            D  ++  L+   G + + +L ++    ++          ++   N L+  Y +   +  
Sbjct: 226 PDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILN--NALLDMYVKCKELRI 283

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           A+ +F            NV  +++ +SWN+MI  YAK G++  A   FE M  RD  SWN
Sbjct: 284 AQSIF------------NVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWN 331

Query: 238 TMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNL------------- 280
           ++I+GY    D      LF  M      PD +T   +VS  A+IG L             
Sbjct: 332 SIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRM 391

Query: 281 ELALD----------------------FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
           ++ +D                       F+ + +K++  W +MI G   +     A++LF
Sbjct: 392 QMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLF 451

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYAR 376
            +MQ E   P++ TF ++L+  S    +  G++I   + +   + P V     L+ +  R
Sbjct: 452 YEMQ-EYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGR 510

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            G   E + + E M +  +   W A++  C ++G
Sbjct: 511 SGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYG 544



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 136/303 (44%), Gaps = 44/303 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  YVK +E+  A+ +F+ + ++D +SWN MI+GY      G LE A   F+ MP RD 
Sbjct: 271 LLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAK---VGNLEIAHNFFEDMPCRDL 327

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMIS-----------GFLQNGDVAN 109
           V+WN++I+GYA+ G+     RLF +M A N+  W   ++           G L +G   +
Sbjct: 328 VSWNSIIAGYAQKGDCLMVQRLFENMVAENI--WPDFVTIINLVSAAAEIGALHHGRWIH 385

Query: 110 AIEFFDRMPGRDSASL-SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
              +  RM  +  A L SA +    + G +  A  V  +        E  V  + T+I G
Sbjct: 386 G--WVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREV------TEKDVTVWTTMITG 437

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           +   G   +A +LF          E       N V++ +++   + +G V     IF  M
Sbjct: 438 FAFHGYGSKALQLFY---------EMQEYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSM 488

Query: 229 LERDTFSWNTMISGYIHVLDM-------EEASNLFVKMP-HPDTLTWNAMVSGYAQIGNL 280
            ER  +     +  Y  ++D+        E  ++   MP  P    W A++S     GN+
Sbjct: 489 KER--YGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNI 546

Query: 281 ELA 283
           E+A
Sbjct: 547 EIA 549



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 145/334 (43%), Gaps = 59/334 (17%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD----------- 53
           Y++  +M  A ++F +M   D VS+N+MI GY + +G   +E  ++L +           
Sbjct: 172 YLENEKMGLAYQVFQQMAAPDAVSFNIMIFGY-AKKGHN-IEALKFLHEMVGLGLKPDEF 229

Query: 54  -----------------------------IMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
                                        ++   + +  N ++  Y K  E+  A  +FN
Sbjct: 230 TMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFN 289

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            +  ++ +SWN MI+G+ + G++  A  FF+ MP RD  S +++++G  Q G+     R+
Sbjct: 290 VIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRL 349

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
                +  +   D V   N L+    + G +   R +   +          VR +  I +
Sbjct: 350 FENMVAE-NIWPDFVTIIN-LVSAAAEIGALHHGRWIHGWV----------VRMQMKIDA 397

Query: 205 W--NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH- 261
           +  ++ I  Y K G +  A  +F ++ E+D   W TMI+G+       +A  LF +M   
Sbjct: 398 FLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEY 457

Query: 262 --PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
             P+ +T+ A+++  +  G +   L  F  M ++
Sbjct: 458 VMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKER 491



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 138/286 (48%), Gaps = 20/286 (6%)

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL- 295
           NT++  Y+    M  A  +F +M  PD +++N M+ GYA+ G+   AL F   M    L 
Sbjct: 166 NTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLK 225

Query: 296 ---VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG--- 349
               +   ++  C    D +    +   ++  G        SS L +++ ++D+++    
Sbjct: 226 PDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIK-----SSNLILNNALLDMYVKCKE 280

Query: 350 MQIHQMVTKTVIPDVPIN-NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           ++I Q +   ++    I+ N +I  YA+ G +  A   FE+M   +++VSWN++I G A 
Sbjct: 281 LRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMP-CRDLVSWNSIIAGYAQ 339

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
            G       LF++M +  + P ++T I+++SA A  G +  GR     +V    ++ +I+
Sbjct: 340 KGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVR---MQMKID 396

Query: 469 HF--ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
            F  ++ +D+  + G ++ A  + + +  E D  VW  ++     H
Sbjct: 397 AFLGSAFIDMYWKCGSIKRACMVFREVT-EKDVTVWTTMITGFAFH 441


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 190/601 (31%), Positives = 306/601 (50%), Gaps = 91/601 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++S Y    ++ + R++FD M +++V  WN M+S Y      G  +E+  LF IM E+  
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK---IGDFKESICLFKIMVEKG- 57

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
                 I G       E A  LF+ +  R+V+SWN+MISG++ NG     +  + +M   
Sbjct: 58  ------IEG----KRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYL 107

Query: 118 -PGRDSASLSALVSGLIQNGELD--EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
               D A++ +++ G  ++G L   +A   L    S     E  +   NTL+  Y + G 
Sbjct: 108 GIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSF----ERRINFSNTLLDMYSKCGD 163

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG------------------ 216
           ++ A ++F+K+      GE      RN+VSW SMI  Y + G                  
Sbjct: 164 LDGALRVFEKM------GE------RNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVK 211

Query: 217 -DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
            DVV+   I        +      +  YI   +M  ASNLFV          NA++  YA
Sbjct: 212 LDVVAITSILHACARSGSLDNGKDVHDYIKANNM--ASNLFV---------CNALMDMYA 260

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFS 334
           + G++E A   F  M  K+++SWN+M+                      GE KPD  T +
Sbjct: 261 KCGSMEGANSVFSTMVVKDIISWNTMV----------------------GELKPDSRTMA 298

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLL 393
            IL   + +  L  G +IH  + +     D  + NAL+ +Y +CG +  AR++F +M   
Sbjct: 299 CILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF-DMIPS 357

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           K++VSW  MI G   HG+  EA+  F  MR   + P  ++FIS+L AC+H+GL+E+G + 
Sbjct: 358 KDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRF 417

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
           F  M N++ IEP++EH+A +VD++ R G L  A   I+ +P  PD  +WGALL  CR+++
Sbjct: 418 FYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYH 477

Query: 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           ++ELA+  AE + ++EPEN+  YVLL N+YA+  +W++   +R  +    ++K  G SW+
Sbjct: 478 DIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWI 537

Query: 574 D 574
           +
Sbjct: 538 E 538


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 174/527 (33%), Positives = 287/527 (54%), Gaps = 40/527 (7%)

Query: 70  YAKTGEMEEALRLFNSMPAR--NVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSA 123
           Y+K  +M  AL +F+  P    NV ++NA+ISGF+ NG      EF+ +M       D  
Sbjct: 2   YSKCNQMNFALSIFSD-PTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           +    +   +   E+ +   +L K G   D     V   + L+  Y + G +E A+  F+
Sbjct: 61  TFPCAIKACLDVLEIKKIHGLLFKFGLELD-----VFIGSALVNCYLKFGLMEHAQVAFE 115

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           ++P+            R++V WN+M+  YA+ G      E F +M +         ++G 
Sbjct: 116 ELPI------------RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGI 163

Query: 244 IHVLD-MEEASN------LFVKMPHPDTLTW-NAMVSGYAQIGNLELALDFFKRMPQKNL 295
           + V   M + +N        +KM +   +   N+++  Y +   +E AL+ F+ M +K++
Sbjct: 164 LSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDI 223

Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-Q 354
            SWNS+ +  E   D++G ++L  +M   G +PD  T +++L   S +  L  G +IH  
Sbjct: 224 FSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGY 283

Query: 355 MVTKTV------IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           M+   +      I DV + NA+I MYA+CG++ +A ++FE M   K+V SWN MI G   
Sbjct: 284 MIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXN-KDVASWNIMIMGYGM 342

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           HG+  EALE+F  M   ++ P  +TF+ VLSAC+HAG V +GR     M ++Y + P IE
Sbjct: 343 HGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIE 402

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528
           H+  ++D++GR G+L++A +L   MP E +  VW ALL ACR+H +  LA+VAA+ + ++
Sbjct: 403 HYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFEL 462

Query: 529 EPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           EPE+   YVL+ N+Y  VGR+++  EVR  M+  N++K  G SW++ 
Sbjct: 463 EPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIEL 509



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 207/484 (42%), Gaps = 76/484 (15%)

Query: 5   YVKRREMAKARKLF-DEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------IMPE 57
           Y K  +M  A  +F D   + +V ++N +ISG+I++   GF EE    +       +MP+
Sbjct: 2   YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITN---GFPEEGFEFYQKMRNEGVMPD 58

Query: 58  R------------------------------DCVTWNTVISGYAKTGEMEEALRLFNSMP 87
           +                              D    + +++ Y K G ME A   F  +P
Sbjct: 59  KFTFPCAIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELP 118

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQ----NGELDEAAR 143
            R+VV WNAM++G+ Q G     +E F RM           V+G++      G+L+   R
Sbjct: 119 IRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNN-GR 177

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
           ++     +  G +  V   N+LI  YG+   +E+A ++F+ +             +++I 
Sbjct: 178 IIHGFAMKM-GYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMR------------EKDIF 224

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
           SWNS+   + + GD      + ++ML    + D  +  T++    H+  +     +   M
Sbjct: 225 SWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYM 284

Query: 260 ----------PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
                        D L  NA++  YA+ G++  A   F+RM  K++ SWN MI G   + 
Sbjct: 285 IVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHG 344

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ-IHQMVTK-TVIPDVPIN 367
               A+++F +M     KPD  TF  +LS  S    +  G   + QM +K  V P +   
Sbjct: 345 YGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHY 404

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
             +I M  R G + EA  +   M +  N V W A++  C  H  A   L    + R F++
Sbjct: 405 TCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAV--LAEVAAQRVFEL 462

Query: 428 LPTY 431
            P +
Sbjct: 463 EPEH 466



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 152/363 (41%), Gaps = 66/363 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS-SRGSGFLEEARYLFD--IMPE 57
           +++ Y+K   M  A+  F+E+P RDVV WN M++GY    +    LE  R + D  ++P 
Sbjct: 97  LVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPS 156

Query: 58  RDCVTW---------------------------------NTVISGYAKTGEMEEALRLFN 84
           R  VT                                  N++I  Y K   +E+AL +F 
Sbjct: 157 RFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFE 216

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            M  +++ SWN++ S   Q GD    +   DRM G     D  +++ ++        L  
Sbjct: 217 MMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMH 276

Query: 141 AARV---LVKCGSRCDGGE-DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
              +   ++  G   DG + D V   N +I  Y + G + +A  +F+++           
Sbjct: 277 GREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMX---------- 326

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA 252
              +++ SWN MIM Y   G    A E+F +M    L+ D  ++  ++S   H   + + 
Sbjct: 327 --NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQG 384

Query: 253 SNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCE 306
            N   +M       P    +  ++    + G L+ A +    MP + N V W +++A C 
Sbjct: 385 RNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACR 444

Query: 307 TNK 309
            +K
Sbjct: 445 LHK 447



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 5/134 (3%)

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY++C  +  A  IF +     NV ++NA+I G  ++GF  E  E ++ MR+  V+P   
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TF   + AC    ++E  + H   ++ ++G+E  +   ++LV+   + G +E A    + 
Sbjct: 61  TFPCAIKAC--LDVLEIKKIH--GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEE 116

Query: 493 MPFEPDKAVWGALL 506
           +P   D  +W A++
Sbjct: 117 LPIR-DVVLWNAMV 129


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 204/713 (28%), Positives = 348/713 (48%), Gaps = 143/713 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           +I  Y K   +  A+K+F+ +  +D+V+W  MISG      +G  EEA  LF      +I
Sbjct: 201 LIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGL---SQNGLEEEAILLFCDMHASEI 257

Query: 55  MP----------------------ERDC--VTW---------NTVISGYAKTGEMEEALR 81
            P                      +  C  + W         N +++ Y+++ ++  A R
Sbjct: 258 FPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAER 317

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGE 137
           +F++M +R+ VS+N++ISG +Q G    A+E F +M       D  ++++L+S     G 
Sbjct: 318 IFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGA 377

Query: 138 LDEAARV------------------LVKCGSRCDGGE-----------DLVRAYNTLIVG 168
           L +  ++                  L+   S+C   E           + +  +N ++V 
Sbjct: 378 LHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVA 437

Query: 169 YGQRGRVEEARKLFDKIPV---------------NCDR------GEG------NVRFKRN 201
           YGQ   + ++ ++F ++ +                C        GE          F+ N
Sbjct: 438 YGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLN 497

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           +   + +I  YAK G +  A  I  ++ E D  SW  MI+GY+      EA  LF +M +
Sbjct: 498 VYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEY 557

Query: 262 ---------------------------------------PDTLTWNAMVSGYAQIGNLEL 282
                                                   D    NA++S YA+ G ++ 
Sbjct: 558 RGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQE 617

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F+++  KN +SWNS+++G   +  +E A+++F++M     + +  T+ S +S ++ 
Sbjct: 618 AYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAAS 677

Query: 343 IVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           + ++  G QIH MV KT    +  ++N+LI++YA+ G+I +A   F +M   +NV+SWNA
Sbjct: 678 LANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSE-RNVISWNA 736

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI G + HG   EAL LF+ M+   ++P ++TF+ VLSAC+H GLV+EG  +F+SM   +
Sbjct: 737 MITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIH 796

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
            + P+ EH+  +VD++GR G+L+ AM+ IK MP   D  +W  LL AC +H N+E+ + A
Sbjct: 797 DLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERA 856

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           A  L+++EPE+S  YVL+ N+YA   +W   +  R LMK   +KK  G SW++
Sbjct: 857 AHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIE 909



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 173/655 (26%), Positives = 274/655 (41%), Gaps = 152/655 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG------------------- 41
           ++  Y +  +   A K+FDE   R V SWN MI  +++ +                    
Sbjct: 99  LVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPN 158

Query: 42  ----SGFLEEA------------------RYLFDIMPERDCVTWNTVISGYAKTGEMEEA 79
               +G L+                     Y FD  P    +  N +I  Y+K G +E A
Sbjct: 159 GYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSP----LVANLLIDLYSKNGYIESA 214

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD--------SASLSALVSG 131
            ++FN +  +++V+W AMISG  QNG    AI  F  M   +        S+ LSA  S 
Sbjct: 215 KKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSA--ST 272

Query: 132 LIQNGELDEAARVLV-KCGSR-----CDG-------GEDLVRA--------------YNT 164
            IQ  EL E    LV K G       C+G          L+ A              YN+
Sbjct: 273 KIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNS 332

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEG---------------------------NVR 197
           LI G  Q+G  + A +LF K+  +C + +                               
Sbjct: 333 LISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAG 392

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
              +I+   S++  Y+K  DV +A + F      +   WN M+  Y  + ++ ++  +F 
Sbjct: 393 MSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFR 452

Query: 258 KMPH----PDTLTW-----------------------------------NAMVSGYAQIG 278
           +M      P+  T+                                   + ++  YA+ G
Sbjct: 453 QMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYG 512

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
            L LAL   +R+P+ ++VSW +MIAG   +  +  A++LF +M+  G + D   F+S +S
Sbjct: 513 QLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAIS 572

Query: 339 MSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
             +GI  L  G QIH Q        D+ INNALI++YARCG I EA + FE++   KN +
Sbjct: 573 ACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIG-DKNNI 631

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           SWN+++ G A  G+  EAL++F  M   +      T+ S +SA A    +++G+Q   SM
Sbjct: 632 SWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQ-IHSM 690

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           V + G +   E   SL+ +  + G + DA      M  E +   W A++     H
Sbjct: 691 VLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGYSQH 744



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 217/462 (46%), Gaps = 27/462 (5%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           ++++  Y + G+   A+++F+    R+V SWN MI  F+           F RM      
Sbjct: 97  DSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT 156

Query: 124 SLSALVSGLIQNGELDEAARVLVK-CGSRC--DGGEDLVRAYNTLIVGYGQRGRVEEARK 180
                 +G+++     + A   VK   SR    G +      N LI  Y + G +E A+K
Sbjct: 157 PNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKK 216

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
           +F+ I +            ++IV+W +MI   ++ G    A  +F  M   + F    ++
Sbjct: 217 VFNCICM------------KDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVL 264

Query: 241 SGY------IHVLDM-EEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           S        I + ++ E+   L +K   H +T   N +V+ Y++   L  A   F  M  
Sbjct: 265 SSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNS 324

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           ++ VS+NS+I+G       + A++LF +MQ +  KPD  T +S+LS  + +  LH GMQ+
Sbjct: 325 RDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQL 384

Query: 353 HQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H    K  +  D+ +  +L+ +Y++C  +  A   F   +  +N+V WN M+        
Sbjct: 385 HSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTE-TENIVLWNVMLVAYGQLDN 443

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
            +++ E+F+ M+   ++P   T+ S+L  C   G +  G Q   + V + G +  +   +
Sbjct: 444 LSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ-IHTHVIKTGFQLNVYVCS 502

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
            L+D+  ++G+L  A+ +++ +P E D   W A++     H+
Sbjct: 503 VLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQHD 543



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 144/342 (42%), Gaps = 45/342 (13%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           + L  +++V  Y + G+   A+  F     +++ SWN MI      K       LF +M 
Sbjct: 92  EPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRML 151

Query: 323 VEGEKPDRHTFSSIL-SMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAI 380
            EG  P+ +TF+ +L +   G +  +   Q+H           P + N LI +Y++ G I
Sbjct: 152 AEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYI 211

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
             A+ +F  +  +K++V+W AMI G + +G   EA+ LF  M + ++ PT     SVLSA
Sbjct: 212 ESAKKVFNCI-CMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSA 270

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL----------------- 483
                L E G Q    +V ++G          LV +  R  +L                 
Sbjct: 271 STKIQLFELGEQ-LHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVS 329

Query: 484 --------------EDAMDLIKGMP---FEPDKAVWGALLGAC----RVHNNVELAQVAA 522
                         + A++L   M     +PD     +LL AC     +H  ++L   A 
Sbjct: 330 YNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAI 389

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           +A M  +       + LY+  ADV   + A++  L  ++ NI
Sbjct: 390 KAGMSADIILEGSLLDLYSKCADV---ETAHKFFLXTETENI 428


>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 177/540 (32%), Positives = 294/540 (54%), Gaps = 22/540 (4%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNV----VSWNAMISG 100
           L +A ++F+ +     + WN +I G +K+    +A+  +N+M  + +    +++  +   
Sbjct: 63  LPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKS 122

Query: 101 FLQNGDV--ANAIEFFDRMPGRDSASL--SALVSGLIQNGELDEAARVLVKCGSRCDGG- 155
             +  DV     +       G +S     +AL+   +  GEL  A +V        DG  
Sbjct: 123 CARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVF-------DGML 175

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
           E  V ++N++I GY Q  R ++   LF ++     R + +V   + I +  +  +   + 
Sbjct: 176 ERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRAD-SVTMMKAISA--TCFLSEWEM 232

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
           GD +  + I E  +  D +  NT+I  Y     ++ A  +F +M   + ++WNAM+ GYA
Sbjct: 233 GDYL-VKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYA 291

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           ++GNL  A   F  MP ++++SW SMI G    K +  A+KLF +M V   KPD  T ++
Sbjct: 292 KVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVAT 351

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
            LS  + +  L  G  +H  + K  I  DV + N+LI MY +CG + +A  +F +MK  +
Sbjct: 352 ALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKT-R 410

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           + VSW ++I G A +GFA  AL +F  M    + PT+ TF+ VL ACAH GLV++G +HF
Sbjct: 411 DSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHF 470

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           KSM N Y + P ++H+  +VD++ R G L+ A + IK MP  PD  +W  LL AC++H N
Sbjct: 471 KSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGN 530

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           + LA++ ++ L+ ++P N+  YVL  + YA   RWDD  ++R LM+  N++KP  YS ++
Sbjct: 531 LVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIE 590



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 184/422 (43%), Gaps = 85/422 (20%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +I  Y+     G L  A+ +FD M ERD V+WN++I GY +    ++ L LF  M A 
Sbjct: 152 NALIHMYVCF---GELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAI 208

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCG 149
           NV +                           DS ++   +S      E  E    LVK  
Sbjct: 209 NVRA---------------------------DSVTMMKAISATCFLSEW-EMGDYLVKYI 240

Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
                  DL    NTLI  YG+RG ++ A ++F ++             ++NIVSWN+MI
Sbjct: 241 DEHGVVVDLYLG-NTLIDMYGRRGMIDFAGRVFYQMK------------EKNIVSWNAMI 287

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF----VKMPHPDTL 265
           M YAK G++V+A+++F +M  RD  SW +MI GY       EA  LF    V M  PD +
Sbjct: 288 MGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEI 347

Query: 266 T-----------------------------------WNAMVSGYAQIGNLELALDFFKRM 290
           T                                    N+++  Y + G +E AL  F  M
Sbjct: 348 TVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDM 407

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
             ++ VSW S+I+G   N   E A+ +F QM  EG  P   TF  +L   + +  +  G+
Sbjct: 408 KTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGV 467

Query: 351 QIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           +  + +  T  + P++     ++ +  R G +  A    ++M ++ +VV W  ++  C  
Sbjct: 468 EHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKL 527

Query: 409 HG 410
           HG
Sbjct: 528 HG 529



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 170/392 (43%), Gaps = 101/392 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------ISSR-- 40
           +I  YV   E+A A+K+FD M +RDVVSWN +I GY                  I+ R  
Sbjct: 154 LIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRAD 213

Query: 41  ---------GSGFLEE---ARYLFDIMPER----DCVTWNTVISGYAKTGEMEEALRLFN 84
                     + FL E     YL   + E     D    NT+I  Y + G ++ A R+F 
Sbjct: 214 SVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFY 273

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            M  +N+VSWNAMI G+ + G++  A + F+ MP RD  S ++++ G     +  EA ++
Sbjct: 274 QMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKL 333

Query: 145 -------------------LVKCG--SRCDGGE---DLVRAY---------NTLIVGYGQ 171
                              L  C      D GE   D +R +         N+LI  Y +
Sbjct: 334 FQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCK 393

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE- 230
            G VE+A ++F+ +              R+ VSW S+I   A  G   SA  +F+QML+ 
Sbjct: 394 CGVVEKALQVFNDMKT------------RDSVSWTSIISGLAVNGFAESALNVFDQMLKE 441

Query: 231 -----RDTFSWNTMISGYIHVLD--------MEEASNLFVKMPHPDTLTWNAMVSGYAQI 277
                  TF    +   ++ ++D        ME    L  +M H     +  +V    + 
Sbjct: 442 GICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKH-----YGCVVDLLCRS 496

Query: 278 GNLELALDFFKRMP-QKNLVSWNSMIAGCETN 308
           G L++A +F K+MP   ++V W  +++ C+ +
Sbjct: 497 GYLDMAYNFIKKMPIVPDVVIWRILLSACKLH 528


>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
 gi|219886289|gb|ACL53519.1| unknown [Zea mays]
          Length = 537

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 164/481 (34%), Positives = 262/481 (54%), Gaps = 19/481 (3%)

Query: 105 GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLV----- 159
           G  A+A   FDR+P  D    + L+ G   +    +A  +  +  +R     DL+     
Sbjct: 56  GGTAHARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARM-ARHSADCDLMTLRPD 114

Query: 160 -RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
            R +  ++      G  E   ++   +       +  VR        N++I  +A  GD+
Sbjct: 115 KRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVR--------NALIGMHATLGDL 166

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
            +A  +F+     D  +W+ MISG+    D+  A  LF + P  D ++WN M++ YA++G
Sbjct: 167 GAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLG 226

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
           ++  A + F   P +++VSWN+MI+G       + A++LF QMQ  GEKPD  T  S+LS
Sbjct: 227 DMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLS 286

Query: 339 MSSGIVDLHLGMQIHQMVT---KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
             +   DL  G ++H  ++     + P   + NALI MYA+CG++  A  +F  M+  KN
Sbjct: 287 ACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQD-KN 345

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           V +WN++IGG A HG ATE++ +F+ M    V P  ITF++VL+AC+H G+V++G ++F 
Sbjct: 346 VSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFS 405

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
            M   Y IEP I+H+  +VD++ R G L++A + I  M  EP+  +W  LLGACR+H  +
Sbjct: 406 LMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEI 465

Query: 516 ELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           ELA+ A   L+K   + S  +VLL N+YA VG W  +  +R LM  + + K  G + +D 
Sbjct: 466 ELAEHANRELLKARSDASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVIDS 525

Query: 576 S 576
           S
Sbjct: 526 S 526



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 166/368 (45%), Gaps = 65/368 (17%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D    N +I  +A  G++  A  LF+     + V+W+AMISGF + GD+  A E FD 
Sbjct: 147 ESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDE 206

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            P +D      LVS                               +N +I  Y + G + 
Sbjct: 207 SPVKD------LVS-------------------------------WNVMITAYAKLGDMA 229

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERD 232
            AR+LFD  P             R++VSWN+MI  Y + G    A E+FEQM     + D
Sbjct: 230 PARELFDGAP------------DRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPD 277

Query: 233 TFSWNTMISGYIHVLDMEEASNL-------FVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
           T +  +++S      D++    L       F ++  P T   NA++  YA+ G++  AL+
Sbjct: 278 TVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIG-PTTALGNALIDMYAKCGSMTSALE 336

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GI 343
            F  M  KN+ +WNS+I G   +     +I +F +M     KPD  TF ++L+  S  G+
Sbjct: 337 VFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGM 396

Query: 344 VDL-HLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
           VD  H    + Q   + + P++     ++ M +R G + EA      MK+  N V W  +
Sbjct: 397 VDKGHEYFSLMQQRYR-IEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTL 455

Query: 403 IGGCASHG 410
           +G C  HG
Sbjct: 456 LGACRIHG 463



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 147/314 (46%), Gaps = 54/314 (17%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++  A  LFD   + D V+W+ MISG+ + RG   +  AR LFD  P +D V+WN +I+ 
Sbjct: 165 DLGAAAALFDGEAREDAVAWSAMISGF-ARRGD--IGAARELFDESPVKDLVSWNVMITA 221

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASL 125
           YAK G+M  A  LF+  P R+VVSWNAMISG+++ G    A+E F++M       D+ ++
Sbjct: 222 YAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTM 281

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
            +L+S    +G+LD   R+      R                              F +I
Sbjct: 282 LSLLSACADSGDLDAGRRLHGFLSGR------------------------------FSRI 311

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
                 G             N++I  YAK G + SA E+F  M +++  +WN++I G   
Sbjct: 312 GPTTALG-------------NALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLAL 358

Query: 246 VLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
                E+  +F KM      PD +T+ A+++  +  G ++   ++F  M Q+  +  N  
Sbjct: 359 HGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIK 418

Query: 302 IAGCETNKDYEGAI 315
             GC  +    G +
Sbjct: 419 HYGCMVDMLSRGGL 432



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 143/322 (44%), Gaps = 52/322 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISG+ +R ++  AR+LFDE P +D+VSWNVMI+ Y      G +  AR LFD  P+RD 
Sbjct: 187 MISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAK---LGDMAPARELFDGAPDRDV 243

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN +ISGY + G  ++A+ LF  M A                             P  
Sbjct: 244 VSWNAMISGYVRCGSRKQAMELFEQMQA-------------------------MGEKP-- 276

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D+ ++ +L+S    +G+LD   R+      R           N LI  Y + G +  A +
Sbjct: 277 DTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALE 336

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSW 236
           +F  +              +N+ +WNS+I   A  G    +  +F +ML+     D  ++
Sbjct: 337 VFWLMQ------------DKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITF 384

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
             +++   H   +++    F  M       P+   +  MV   ++ G L+ A +F   M 
Sbjct: 385 VAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMK 444

Query: 292 -QKNLVSWNSMIAGCETNKDYE 312
            + N V W +++  C  + + E
Sbjct: 445 IEPNPVIWRTLLGACRIHGEIE 466


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 189/601 (31%), Positives = 311/601 (51%), Gaps = 91/601 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++S Y    ++ + R++FD M +++V  WN M+S Y      G  +E+  LF IM E+  
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK---IGDFKESICLFKIMVEKG- 195

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
                 I G       E A  LF+ +  R+V+SWN+MISG++ NG     +  + +M   
Sbjct: 196 ------IEG----KRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYL 245

Query: 118 -PGRDSASLSALVSGLIQNGELD--EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
               D A++ +++ G   +G L   +A   L    S     E  +   NTL+  Y + G 
Sbjct: 246 GIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSF----ERRINFSNTLLDMYSKCGD 301

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LE 230
           ++ A ++F+K+      GE      RN+VSW SMI  Y + G    A ++ +QM    ++
Sbjct: 302 LDGALRVFEKM------GE------RNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVK 349

Query: 231 RDTFSWNTMISG---------------YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
            D  +  +++                 YI   +ME  SNLFV          NA++  YA
Sbjct: 350 LDVVAITSILHACARSGSLDNGKDVHDYIKANNME--SNLFV---------CNALMDMYA 398

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFS 334
           + G++E A   F  M  K+++SWN+MI                      GE KPD  T +
Sbjct: 399 KCGSMEAANSVFSTMVVKDIISWNTMI----------------------GELKPDSRTMA 436

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLL 393
            +L   + +  L  G +IH  + +     D  + NAL+ +Y +CG +  AR++F +M   
Sbjct: 437 CVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF-DMIPS 495

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           K++VSW  MI G   HG+  EA+  F  MR   + P  ++FIS+L AC+H+GL+E+G + 
Sbjct: 496 KDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRF 555

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
           F  M N++ IEP++EH+A +VD++ R G L  A + ++ +P  PD  +WGALL  CR ++
Sbjct: 556 FYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYH 615

Query: 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           ++ELA+  AE + ++EPEN+  YVLL N+YA+  +W++   +R  +    ++K  G SW+
Sbjct: 616 DIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWI 675

Query: 574 D 574
           +
Sbjct: 676 E 676



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 136/529 (25%), Positives = 224/529 (42%), Gaps = 114/529 (21%)

Query: 84  NSMPARN----VVSWNAMISGFLQNGDVANAIEFF-----DRMPGRDSASLSALVSGLIQ 134
           ++ P R     V  +NA I  F Q GD+ NA+E         +  +   S+  L +GL  
Sbjct: 55  SATPTRTIDHQVTDYNAKILHFCQLGDLENAMELICMCQKSELETKTYGSVLQLCAGLKS 114

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
             +  +   ++       DG   L      L+  Y   G ++E R++FD +         
Sbjct: 115 FTDGKKVHSIIKSNSVGVDGALGL-----KLVSFYATCGDLKEGRRVFDTME-------- 161

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVV--------------------SAREIFEQMLERDTF 234
               K+N+  WN M+  YAK GD                      SA E+F+++ +RD  
Sbjct: 162 ----KKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVI 217

Query: 235 SWNTMISGYIHV-------------------LDMEEASNLFVKMPHPDTLTW-------- 267
           SWN+MISGY+                     +D+    ++ V   +  TL+         
Sbjct: 218 SWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277

Query: 268 ------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
                       N ++  Y++ G+L+ AL  F++M ++N+VSW SMIAG   +   +GAI
Sbjct: 278 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAI 337

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-TKTVIPDVPINNALITMY 374
           KL  QM+ EG K D    +SIL   +    L  G  +H  +    +  ++ + NAL+ MY
Sbjct: 338 KLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMY 397

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           A+CG++  A  +F  M ++K+++SWN MIG                     ++ P   T 
Sbjct: 398 AKCGSMEAANSVFSTM-VVKDIISWNTMIG---------------------ELKPDSRTM 435

Query: 435 ISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
             VL ACA    +E G++ H   + N Y  +  + +  +LVD+  + G L  A  L   +
Sbjct: 436 ACVLPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDLYVKCGVLGLARLLFDMI 493

Query: 494 PFEPDKAVWGALLGACRVH--NNVELAQVAAEALMKVEPENSTPYVLLY 540
           P   D   W  ++    +H   N  +A         +EP+  +   +LY
Sbjct: 494 P-SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILY 541


>gi|449527015|ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 174/545 (31%), Positives = 289/545 (53%), Gaps = 43/545 (7%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN-GD 106
           A+ +FD + +++ + W+ ++ GY K   M++AL LF  +P R+VV+W  MIS + ++  +
Sbjct: 157 AKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYARSEHN 216

Query: 107 VANAIEFFD--RMPG-------------RDSASLSALVSGLIQNGELDEAARVLVKCGSR 151
               +E F   RM G             R    +  L  G + +G       +L K G  
Sbjct: 217 CKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHG-------ILTKYGFH 269

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
            D         + LI+ Y Q   ++ A+ ++D +   C +              NS++  
Sbjct: 270 FDHS-----VCSALILFYCQCEAIDSAKAVYDSMERPCLKAS------------NSLLEG 312

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMV 271
              AG +  A EIF ++ E++  S+N M+ GY     +E +  LF +M H  T + N M+
Sbjct: 313 LIFAGRINDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNTMI 372

Query: 272 SGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
           S Y++ G ++ A   F+ +  + + V+WNSMI+G   N  +EGA+KL+I M     +  R
Sbjct: 373 SVYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGYIQNHQHEGALKLYITMCRTSVERSR 432

Query: 331 HTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEE 389
            TFS++    + +  + LG  +H   + +    +V +  +LI MYA+CG+I +A+  F  
Sbjct: 433 STFSALFQACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSFAS 492

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           +  L NV ++ A+I G   HG   EA  +F  M   KV P   T + +LSAC+ AG+V+E
Sbjct: 493 V-CLPNVAAFTALINGYVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKE 551

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           G   F SM   YG+ P +EH+A +VD++GR GRL +A   I+ MP E D+ +WGALL AC
Sbjct: 552 GMTVFHSMEKCYGVIPTLEHYACVVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLNAC 611

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
               ++EL +  A+ ++ ++P+  + Y++L N+YA +G+W +   VR  + S  +KK  G
Sbjct: 612 WFWMDLELGESVAKKVLSLDPKAISAYIILSNIYAKLGKWVEKINVRRKLMSLKVKKIRG 671

Query: 570 YSWVD 574
            SW+D
Sbjct: 672 CSWID 676



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/454 (22%), Positives = 201/454 (44%), Gaps = 95/454 (20%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           ++ N  IS + + G ++ A  LFN MP R+VVSWN MISG+ + G  + A+     M   
Sbjct: 38  ISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASEMHCN 97

Query: 121 D----SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           +      + S+L+S    +G   E                   + ++ L++  G      
Sbjct: 98  NVKLNETTFSSLLSICAHSGCSSEG------------------KQFHCLVLKSGL----- 134

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
              ++F+++      G   V F             YA   D+  A+++F+++ +++   W
Sbjct: 135 ---QIFERV------GSALVYF-------------YANINDISGAKQVFDELHDKNDLLW 172

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           + ++ GY+    M++A +LF+K+P  D + W  M+S YA+                    
Sbjct: 173 DLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYAR-------------------- 212

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
                     +  + +  ++LF  M++ GE +P+  TF S++     +  L  G  +H +
Sbjct: 213 ----------SEHNCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHGI 262

Query: 356 VTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFA 412
           +TK     D  + +ALI  Y +C AI  A+ +++ M+   LK   + N+++ G    G  
Sbjct: 263 LTKYGFHFDHSVCSALILFYCQCEAIDSAKAVYDSMERPCLK---ASNSLLEGLIFAGRI 319

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
            +A E+F  +R        +++  +L   A +G +E  ++ F+ M ++           +
Sbjct: 320 NDAEEIFCKLRE----KNPVSYNLMLKGYATSGRIEGSKRLFERMTHK-----TTSSLNT 370

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           ++ +  R+G ++ A  L + +  E D   W +++
Sbjct: 371 MISVYSRNGEIDKAFKLFESVKSEGDPVTWNSMI 404


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 174/521 (33%), Positives = 271/521 (52%), Gaps = 59/521 (11%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RD 121
           ++  YA   ++  A ++F+ +P RNV+  N MI  ++ NG     I+ F  M       D
Sbjct: 81  LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             +   ++     +G         +  G +  G    V   +TL VG             
Sbjct: 141 HYTFPCVLKACSCSGN--------IVIGKKIHGSATKVGLSSTLFVG------------- 179

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
                                   N ++  Y K G +  AR + ++M  RD  SWN++++
Sbjct: 180 ------------------------NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVA 215

Query: 242 GYIHVLDMEEASNLF-----VKMPHPDTLTWNAMVSGYAQIG--NLELALDFFKRMPQKN 294
           GY      ++A  +      VK+ H D  T  +++   +     N+    D F +M +K+
Sbjct: 216 GYAQNQRFDDALEVCREMESVKISH-DAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKS 274

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           LVSWN MI     N     A++L+  M+ +G +PD  + +S+L        L LG +IH 
Sbjct: 275 LVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 334

Query: 355 MVT-KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
            +  K +IP++ + NALI MYA+CG +  AR +FE MK  ++VVSW AMI      G   
Sbjct: 335 YIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKS-RDVVSWTAMISAYGFSGRGC 393

Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           +A+ LF  M+   ++P  I F++ L+AC+HAGL+EEGR  FK M + Y I PR+EH A +
Sbjct: 394 DAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACM 453

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
           VD++GR G++++A   I+ MP EP++ VWGALLGACRVH+N ++  +AA+ L ++ PE S
Sbjct: 454 VDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQS 513

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             YVLL N+YA  GRW++   +R +MKS  +KK  G S V+
Sbjct: 514 GYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVE 554



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 155/367 (42%), Gaps = 87/367 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           ++  Y   +++A ARK+FDE+P+R+V+  NVMI  Y++   +GF  E   +F  M     
Sbjct: 81  LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVN---NGFYREGIQVFGTMCSCHV 137

Query: 56  -PER---DCV------------------------------TWNTVISGYAKTGEMEEALR 81
            P+     CV                                N ++S Y K G + EA  
Sbjct: 138 KPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 197

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGE 137
           + + M  R+VVSWN++++G+ QN    +A+E    M       D+ ++++L+   + N  
Sbjct: 198 VLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPA-VSNTT 256

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF----------DK 184
            +    V     K G +       + ++N +I  Y +     EA +L+          D 
Sbjct: 257 TENVMYVKDMFFKMGKKS------LVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDA 310

Query: 185 IPVNC--------------DRGEGNVRFKR---NIVSWNSMIMCYAKAGDVVSAREIFEQ 227
           + +                 +  G +  K+   N++  N++I  YAK G +  AR++FE 
Sbjct: 311 VSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFEN 370

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELA 283
           M  RD  SW  MIS Y       +A  LF KM      PD++ +   ++  +  G LE  
Sbjct: 371 MKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEG 430

Query: 284 LDFFKRM 290
              FK M
Sbjct: 431 RSCFKLM 437



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 41/213 (19%)

Query: 15  RKLFDEMPQRDVVSWNVMISGYISS-------------RGSGFLEEARYLFDIMP----- 56
           + +F +M ++ +VSWNVMI  Y+ +                GF  +A  +  ++P     
Sbjct: 264 KDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDT 323

Query: 57  -------------ER-----DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMI 98
                        ER     + +  N +I  YAK G ++ A  +F +M +R+VVSW AMI
Sbjct: 324 SALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMI 383

Query: 99  SGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
           S +  +G   +A+  F +M       DS +    ++     G L+E  R   K  +    
Sbjct: 384 SAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEE-GRSCFKLMTDHYK 442

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPV 187
               +     ++   G+ G+V+EA K   ++P+
Sbjct: 443 ITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPM 475



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 14/128 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY-ISSRGSGFLEEARYLFDIMPER- 58
           +I  Y K   + +AR +F+ M  RDVVSW  MIS Y  S RG     +A  LF  M +  
Sbjct: 351 LIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGC----DAVALFSKMQDSG 406

Query: 59  ---DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANA 110
              D + + T ++  +  G +EE    F  M     ++        M+    + G V  A
Sbjct: 407 LVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEA 466

Query: 111 IEFFDRMP 118
            +F   MP
Sbjct: 467 YKFIQEMP 474


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 199/632 (31%), Positives = 316/632 (50%), Gaps = 88/632 (13%)

Query: 4   GYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----PERD 59
           G+  R +M     LFD M  R++VSWN MISGY    G  F  +A  LF  M     + D
Sbjct: 198 GFYLRFDMRVLPLLFDLMVVRNIVSWNAMISGYYDV-GDYF--KALELFVQMLVDEVKFD 254

Query: 60  CVT-----------------------------------WNTVISGYAKTGEMEEALRLFN 84
           CVT                                    N +++ Y+  G +E + +LF 
Sbjct: 255 CVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFE 314

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASL-------SALVSGLI 133
           S+P R+   WN+MIS +   G    A++ F RM      +D  ++         L SGL+
Sbjct: 315 SVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLL 374

Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
           +   L      ++K G R D         N L+  Y +   VE  +K+FD++        
Sbjct: 375 KGKSLHAH---VIKSGMRIDASLG-----NALLSMYTELNCVESVQKIFDRMK------- 419

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD----TFSWNTMISGY--IHVL 247
                  +I+SWN+MI+  A+      A E+FE+M E +    +++  ++++    +  L
Sbjct: 420 -----GVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCL 474

Query: 248 DMEEASNLFVKMPHPDTLTW---NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           D   + + +V M H   +      A+   Y   G+   A D F+  P ++L+SWN+MIA 
Sbjct: 475 DFGRSIHGYV-MKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIAS 533

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK---TVI 361
              N     A+ LF +M  E E P+  T  ++LS  + +  L  G  +H  VT+   ++ 
Sbjct: 534 YVKNNQAHKALLLFHRMISEAE-PNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLG 592

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
            D+ + NA ITMYARCG++  A  IF+ +   +N++SWNAMI G   +G  ++A+  F  
Sbjct: 593 LDLSLANAFITMYARCGSLQSAENIFKTLPK-RNIISWNAMIAGYGMNGRGSDAMLAFSQ 651

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M      P  +TF+SVLSAC+H+G +E G Q F SMV ++ + P + H++ +VD++ R G
Sbjct: 652 MLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGG 711

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
            +++A + I  MP EPD +VW ALL +CR +++ + A+   E L K+EP N+  YVLL N
Sbjct: 712 CIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSN 771

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +YA  G W +   +R  +K   ++KP G SW+
Sbjct: 772 VYATAGLWLEVRRIRTWLKEKGLRKPPGISWI 803



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 143/466 (30%), Positives = 219/466 (46%), Gaps = 34/466 (7%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-- 121
             V+  Y K G +E+A  +F++M  R+VV WNAM+ G++  G    A+     M GR+  
Sbjct: 92  TAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREM-GRENL 150

Query: 122 ---SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
              S ++ AL+       EL     V   C    +G  D      T ++G+  R  +   
Sbjct: 151 RPNSRTMVALLLACEGASELRLGRGVHGYCLR--NGMFDSNPHVATALIGFYLRFDMRVL 208

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML-ERDTFSWN 237
             LFD + V            RNIVSWN+MI  Y   GD   A E+F QML +   F   
Sbjct: 209 PLLFDLMVV------------RNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCV 256

Query: 238 TMISGYIHVLDM------EEASNLFVKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
           TM+       ++      ++   L +K     D    NA+++ Y+  G+LE +   F+ +
Sbjct: 257 TMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESV 316

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD-LHLG 349
           P ++   WNSMI+       +E A+ LFI+MQ EG K D  T   +LSM   +   L  G
Sbjct: 317 PNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKG 376

Query: 350 MQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
             +H  V K+ +  D  + NAL++MY     +   + IF+ MK + +++SWN MI   A 
Sbjct: 377 KSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGV-DIISWNTMILALAR 435

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
           +    +A ELF+ MR  ++ P   T IS+L+AC     ++ GR      V ++ IE    
Sbjct: 436 NTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRS-IHGYVMKHSIEINQP 494

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
              +L D+    G    A DL +G P + D   W A++ A  V NN
Sbjct: 495 LRTALADMYMNCGDEATARDLFEGCP-DRDLISWNAMI-ASYVKNN 538



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 158/563 (28%), Positives = 242/563 (42%), Gaps = 86/563 (15%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD----- 59
           Y K   +  AR +FD M  RDVV WN M+ GY+   G G  EEA  L   M   +     
Sbjct: 98  YCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYV---GWGCYEEAMLLVREMGRENLRPNS 154

Query: 60  -------------------------CVT---------WNTVISGYAKTGEMEEALRLFNS 85
                                    C+            T + G+    +M     LF+ 
Sbjct: 155 RTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPLLFDL 214

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDEA 141
           M  RN+VSWNAMISG+   GD   A+E F +M       D  ++   V    + G L + 
Sbjct: 215 MVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSL-KL 273

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            + + +   + +  EDL    N L+  Y   G +E + +LF+ +P             R+
Sbjct: 274 GKQIHQLAIKFEFVEDLY-ILNALLNMYSNNGSLESSHQLFESVP------------NRD 320

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFV 257
              WNSMI  YA  G    A ++F +M    +++D  +   M+S     +  E AS L  
Sbjct: 321 APLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLS-----MCEELASGLLK 375

Query: 258 -KMPHP---------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
            K  H          D    NA++S Y ++  +E     F RM   +++SWN+MI     
Sbjct: 376 GKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALAR 435

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPI 366
           N     A +LF +M+    KP+ +T  SIL+    +  L  G  IH  V K  I  + P+
Sbjct: 436 NTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPL 495

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
             AL  MY  CG    AR +FE     ++++SWNAMI     +  A +AL LF  M S +
Sbjct: 496 RTALADMYMNCGDEATARDLFEGCP-DRDLISWNAMIASYVKNNQAHKALLLFHRMIS-E 553

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA--SLVDIVGRHGRLE 484
             P  +T I+VLS+  H   + +G Q   + V   G    ++     + + +  R G L+
Sbjct: 554 AEPNSVTIINVLSSFTHLATLPQG-QSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQ 612

Query: 485 DAMDLIKGMPFEPDKAVWGALLG 507
            A ++ K +P + +   W A++ 
Sbjct: 613 SAENIFKTLP-KRNIISWNAMIA 634



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 6/248 (2%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D     A+V  Y + G +E A   F  M  +++V WN+M+ G      YE A+ L  +M 
Sbjct: 87  DVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMG 146

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV--PINNALITMYARCGAI 380
            E  +P+  T  ++L    G  +L LG  +H    +  + D    +  ALI  Y R    
Sbjct: 147 RENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMR 206

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
           V   ++F+ M +++N+VSWNAMI G    G   +ALELF  M   +V    +T +  + A
Sbjct: 207 V-LPLLFDLM-VVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQA 264

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           CA  G ++ G+Q    +  ++     +    +L+++   +G LE +  L + +P   D  
Sbjct: 265 CAELGSLKLGKQ-IHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVP-NRDAP 322

Query: 501 VWGALLGA 508
           +W +++ A
Sbjct: 323 LWNSMISA 330



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 2/160 (1%)

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K+   WNS+I      K+ +  +  + QM+  G  P+  T   +L   +    +  G  I
Sbjct: 16  KDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSI 75

Query: 353 HQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H+ +  T ++ DV +  A++  Y +CG + +AR +F+ M   ++VV WNAM+ G    G 
Sbjct: 76  HRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMS-DRDVVLWNAMVYGYVGWGC 134

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             EA+ L + M    + P   T +++L AC  A  +  GR
Sbjct: 135 YEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGR 174



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 384 RIIFEEMKL-LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           R+     K+ +K+   WN++I   A+       L  +  M S  VLP   T   VL ACA
Sbjct: 5   RLTLSPTKIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACA 64

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
               VE G+   +S +    +   +    ++VD   + G +EDA  +   M  + D  +W
Sbjct: 65  AQNAVERGKSIHRS-IQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMS-DRDVVLW 122

Query: 503 GALL 506
            A++
Sbjct: 123 NAMV 126


>gi|125525521|gb|EAY73635.1| hypothetical protein OsI_01524 [Oryza sativa Indica Group]
          Length = 560

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 173/523 (33%), Positives = 283/523 (54%), Gaps = 28/523 (5%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
            T IS     G +  A  LF+ MP R+VV+W AM+SG+  NG    A++ F RM    +A
Sbjct: 7   TTFISSLCSRGAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAA 66

Query: 124 SLSALVSGLIQ--NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR-VEEARK 180
                +S ++    G    A  + +   +   G + +    N LI  Y      V +AR+
Sbjct: 67  PNEYTLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDARR 126

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSW 236
           LFD +      G G     R   SW SMI  YA+ G   +   +F+ ML    E  TF+ 
Sbjct: 127 LFDAL------GSG-----RTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFAC 175

Query: 237 NTMISGYIHVLDMEEASNLFV----KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           +  +     V+D+     L +    K    +    N+++  Y     +  A   F   P+
Sbjct: 176 SIALHACTLVIDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPE 235

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           +NL++WN+MIAG  +  D   A++L ++M    ++P+  T +SI S  + +  L  G Q+
Sbjct: 236 RNLITWNTMIAG-YSQCDPLMALQLLLEMN---DEPNCFTLTSITSACADLAALRCGKQV 291

Query: 353 HQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H  V + +   D+ + NAL+ MY++CG+I  A+ +F+ M   K+  SW +MI G   +G+
Sbjct: 292 HGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKNVFDRMGC-KDKFSWTSMIAGYGMNGY 350

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             EA++LF SM    V P ++ F+S++S+C+HAGLV+EG   F+SM+NEY ++P  E + 
Sbjct: 351 GNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYG 410

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
           S+V+++ R GRL +A+DLI  MPF PD+ VWGALLGA ++HNNVE+ ++AA  + ++ P+
Sbjct: 411 SVVNLLARAGRLREALDLIDTMPFAPDEYVWGALLGASKMHNNVEMGRLAARKITEINPD 470

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +   Y++L ++YA   +W +    R  ++    +K  G SW++
Sbjct: 471 DVKNYIMLASIYAAGSKWGEYAFTRRSLRGIGSRKEAGISWIE 513



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/461 (25%), Positives = 200/461 (43%), Gaps = 72/461 (15%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD-------- 53
           IS    R  +  AR LFDEMP+RDVV+W  M+SGY S   +G   EA  +F         
Sbjct: 10  ISSLCSRGAVCHARALFDEMPERDVVAWTAMLSGYAS---NGLRREALDVFRRMVAAGAA 66

Query: 54  ---------------------IMP----------ERDCVTWNTVISGYAKTGE-MEEALR 81
                                 MP          +R     N +I  YA   E + +A R
Sbjct: 67  PNEYTLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDARR 126

Query: 82  LFNSM-PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNG---- 136
           LF+++   R   SW +MI+G+ + G     +  F  M  +D   LS     +  +     
Sbjct: 127 LFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTML-KDGVELSTFACSIALHACTLV 185

Query: 137 -ELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
            +L    ++ ++C  +     D+ +   N+LI  Y    R+ +AR LFD  P        
Sbjct: 186 IDLCLGQQLHLQCIKK---ALDVNLAVVNSLIDMYCTCARILDARSLFDGTP-------- 234

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM---EE 251
               +RN+++WN+MI  Y++   +++ + + E   E + F+  ++ S    +  +   ++
Sbjct: 235 ----ERNLITWNTMIAGYSQCDPLMALQLLLEMNDEPNCFTLTSITSACADLAALRCGKQ 290

Query: 252 ASNLFVKMPHPDTLTW-NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
                ++  + D L   NA+V  Y++ G++  A + F RM  K+  SW SMIAG   N  
Sbjct: 291 VHGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGY 350

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINN 368
              A++LF  M   G  PD   F S++S  S  G+VD         +    + P+  +  
Sbjct: 351 GNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYG 410

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           +++ + AR G + EA  + + M    +   W A++G    H
Sbjct: 411 SVVNLLARAGRLREALDLIDTMPFAPDEYVWGALLGASKMH 451



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 115/248 (46%), Gaps = 23/248 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y     +  AR LFD  P+R++++WN MI+GY        L   + L ++  E +C
Sbjct: 213 LIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCDP---LMALQLLLEMNDEPNC 269

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMISGFLQNGDVANAIEFFDR 116
            T  ++ S  A    +    ++  ++  R    ++   NA++  + + G + NA   FDR
Sbjct: 270 FTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKNVFDR 329

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           M  +D  S +++++G   NG  +EA ++   ++  G   D        + +LI      G
Sbjct: 330 MGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDH-----VVFLSLISSCSHAG 384

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LERD 232
            V+E    F  + +N    E N++  + +  + S++   A+AG +  A ++ + M    D
Sbjct: 385 LVDEGWNFFRSM-IN----EYNLQPNKEV--YGSVVNLLARAGRLREALDLIDTMPFAPD 437

Query: 233 TFSWNTMI 240
            + W  ++
Sbjct: 438 EYVWGALL 445



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 107/261 (40%), Gaps = 30/261 (11%)

Query: 47  EARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF-------NSMPARNVVSWNAMIS 99
           +AR LFD  PER+ +TWNT+I+GY++   +  AL+L        N     ++ S  A ++
Sbjct: 225 DARSLFDGTPERNLITWNTMIAGYSQCDPL-MALQLLLEMNDEPNCFTLTSITSACADLA 283

Query: 100 GFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLV 159
                  V  A+    R    D    +ALV    + G +  A  V  + G +        
Sbjct: 284 ALRCGKQVHGAV--LRRSYSDDLQMGNALVDMYSKCGSITNAKNVFDRMGCKDK------ 335

Query: 160 RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVV 219
            ++ ++I GYG  G   EA +LF  +         +     + V + S+I   + AG V 
Sbjct: 336 FSWTSMIAGYGMNGYGNEAVQLFSSMI--------HAGVHPDHVVFLSLISSCSHAGLVD 387

Query: 220 SAREIFEQMLERDTFSWNTMISGYIHVL-----DMEEASNLFVKMPH-PDTLTWNAMVSG 273
                F  M+       N  + G +  L      + EA +L   MP  PD   W A++  
Sbjct: 388 EGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMPFAPDEYVWGALLGA 447

Query: 274 YAQIGNLELALDFFKRMPQKN 294
                N+E+     +++ + N
Sbjct: 448 SKMHNNVEMGRLAARKITEIN 468


>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
          Length = 537

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 164/481 (34%), Positives = 262/481 (54%), Gaps = 19/481 (3%)

Query: 105 GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLV----- 159
           G  A+A   FDR+P  D    + L+ G   +    +A  +  +  +R     DL+     
Sbjct: 56  GGTAHARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARM-ARHSADCDLMTLRPD 114

Query: 160 -RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
            R +  ++      G  E   ++   +       +  VR        N++I  +A  GD+
Sbjct: 115 KRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVR--------NALIGMHATLGDL 166

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
            +A  +F+     D  +W+ MISG+    D+  A  LF + P  D ++WN M++ YA++G
Sbjct: 167 GAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLG 226

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
           ++  A + F   P +++VSWN+MI+G       + A++LF QMQ  GEKPD  T  S+LS
Sbjct: 227 DMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLS 286

Query: 339 MSSGIVDLHLGMQIHQMVT---KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
             +   DL  G ++H  ++     + P   + NALI MYA+CG++  A  +F  M+  KN
Sbjct: 287 ACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQD-KN 345

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           V +WN++IGG A HG ATE++ +F+ M    V P  ITF++VL+AC+H G+V++G ++F 
Sbjct: 346 VSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFS 405

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
            M   Y IEP I+H+  +VD++ R G L++A + I  M  EP+  +W  LLGACR+H  +
Sbjct: 406 LMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEI 465

Query: 516 ELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           ELA+ A   L+K   + S  +VLL N+YA VG W  +  +R LM  + + K  G + +D 
Sbjct: 466 ELAEHANRELLKARSDASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVIDS 525

Query: 576 S 576
           S
Sbjct: 526 S 526



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 166/368 (45%), Gaps = 65/368 (17%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D    N +I  +A  G++  A  LF+     + V+W+AMISGF + GD+  A E FD 
Sbjct: 147 ESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDE 206

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            P +D      LVS                               +N +I  Y + G + 
Sbjct: 207 SPVKD------LVS-------------------------------WNVMITAYAKLGDMA 229

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERD 232
            AR+LFD  P             R++VSWN+MI  Y + G    A E+FEQM     + D
Sbjct: 230 PARELFDGAP------------DRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPD 277

Query: 233 TFSWNTMISGYIHVLDMEEASNL-------FVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
           T +  +++S      D++    L       F ++  P T   NA++  YA+ G++  AL+
Sbjct: 278 TVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIG-PTTALGNALIDMYAKCGSMTSALE 336

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GI 343
            F  M  KN+ +WNS+I G   +     +I +F +M     KPD  TF ++L+  S  G+
Sbjct: 337 VFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGM 396

Query: 344 VDL-HLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
           VD  H    + Q   + + P++     ++ M +R G + EA      MK+  N V W  +
Sbjct: 397 VDKGHEYFSLMQQRYR-IEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTL 455

Query: 403 IGGCASHG 410
           +G C  HG
Sbjct: 456 LGACRIHG 463



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 147/314 (46%), Gaps = 54/314 (17%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           ++  A  LFD   + D V+W+ MISG+ + RG   +  AR LFD  P +D V+WN +I+ 
Sbjct: 165 DLGAAAALFDGEAREDAVAWSAMISGF-ARRGD--IGAARELFDESPVKDLVSWNVMITA 221

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASL 125
           YAK G+M  A  LF+  P R+VVSWNAMISG+++ G    A+E F++M       D+ ++
Sbjct: 222 YAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTM 281

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
            +L+S    +G+LD   R+      R                              F +I
Sbjct: 282 LSLLSACADSGDLDAGRRLHGFLSGR------------------------------FSRI 311

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
                 G             N++I  YAK G + SA E+F  M +++  +WN++I G   
Sbjct: 312 GPTTALG-------------NALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLAL 358

Query: 246 VLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
                E+  +F KM      PD +T+ A+++  +  G ++   ++F  M Q+  +  N  
Sbjct: 359 HGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIK 418

Query: 302 IAGCETNKDYEGAI 315
             GC  +    G +
Sbjct: 419 HYGCMVDMLSRGGL 432



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 143/322 (44%), Gaps = 52/322 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MISG+ +R ++  AR+LFDE P +D+VSWNVMI+ Y      G +  AR LFD  P+RD 
Sbjct: 187 MISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAK---LGDMAPARELFDGAPDRDV 243

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN +ISGY + G  ++A+ LF  M A                             P  
Sbjct: 244 VSWNAMISGYVRCGSRKQAMELFEQMQA-------------------------MGEKP-- 276

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D+ ++ +L+S    +G+LD   R+      R           N LI  Y + G +  A +
Sbjct: 277 DTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALE 336

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSW 236
           +F  +              +N+ +WNS+I   A  G    +  +F +ML+     D  ++
Sbjct: 337 VFWLMQ------------DKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITF 384

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
             +++   H   +++    F  M       P+   +  MV   ++ G L+ A +F   M 
Sbjct: 385 VAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMK 444

Query: 292 -QKNLVSWNSMIAGCETNKDYE 312
            + N V W +++  C  + + E
Sbjct: 445 IEPNPVIWRTLLGACRIHGEIE 466


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 186/593 (31%), Positives = 307/593 (51%), Gaps = 59/593 (9%)

Query: 8   RREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVI 67
           R E +    L  E   R++ +   MI G+I    +GF E            D      ++
Sbjct: 55  RIESSYYFPLLQECIDRNLATEARMIHGHIVK--TGFHE------------DLFVMTFLV 100

Query: 68  SGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRD 121
           + Y+K G ME A ++F+++P RNV +W  +++G++QN     A++ F +M      P   
Sbjct: 101 NVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNY 160

Query: 122 SASLSALVSGLIQNGELDEAARV-LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  +       +Q+ E  +     L+K     D         N+L   Y +  R+E A K
Sbjct: 161 TLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFD-----TSIGNSLSSFYSKFRRLEFAIK 215

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSW 236
            F  I             +++++SW S+I      G    +   F  ML    + + ++ 
Sbjct: 216 AFKIIK------------EKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTL 263

Query: 237 NTMISGYIHVLDME---EASNLFVKMPHPDT-LTWNAMVSGYAQIGNLELALDFFKRMPQ 292
            +++S    +L ++   +  +L +K+ +  + L  N+++  Y + G L  A   F+ M  
Sbjct: 264 TSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMET 323

Query: 293 KNLVSWNSMIAG-----------CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            NLV+WN+MIAG              +K    A+ +F ++   G KPD  TFSS+LS+ S
Sbjct: 324 LNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCS 383

Query: 342 GIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +V L  G QIH Q++   V+ DV +  AL++MY +CG+I +A   F EM   + ++SW 
Sbjct: 384 NLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPS-RTMISWT 442

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           +MI G A HG + +AL+LF+ MR   + P  +TF+ VLSAC+HAGL +E   +F+ M  +
Sbjct: 443 SMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQ 502

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           Y I+P ++HFA L+D+  R GR+E+A D++  M FEP++ +W  L+  CR H   +L   
Sbjct: 503 YNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFY 562

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           AAE L+K++P++   YV L NM+   GRW D ++VR LMK   + K   +SW+
Sbjct: 563 AAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWI 615



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 100/232 (43%), Gaps = 52/232 (22%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS------------SRGSGFLEEARYLF 52
           Y+K   + +A+KLF+ M   ++V+WN MI+G+                GS  L   + L+
Sbjct: 305 YLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLY 364

Query: 53  DIMPERDCVTWNTV-----------------------------------ISGYAKTGEME 77
               + D  T+++V                                   +S Y K G ++
Sbjct: 365 RSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSID 424

Query: 78  EALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD--RMPG--RDSASLSALVSGLI 133
           +A + F  MP+R ++SW +MI+GF ++G    A++ F+  R+ G   +  +   ++S   
Sbjct: 425 KASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACS 484

Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
             G  DEA     +   +    + ++  +  LI  Y + GRVEEA  +  K+
Sbjct: 485 HAGLADEALYYF-ELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKM 535



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 25/197 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY----ISSRGSGFLEEARYLFDIMP 56
           ++S Y K   + KA K F EMP R ++SW  MI+G+    +S +     E+ R L  I P
Sbjct: 413 LVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMR-LVGIKP 471

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
            +  VT+  V+S  +  G  +EAL  F  M  +  +      +  +I  +L+ G V  A 
Sbjct: 472 NQ--VTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAF 529

Query: 112 EFFDRMPGRDSASL-SALVSGLIQNGELD---EAARVLVKCGSRCDGGEDLVRAYNTLIV 167
           +   +M    + ++ S L++G   +G+ D    AA  L+K   +       V  Y +L+ 
Sbjct: 530 DVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKD------VETYVSLLN 583

Query: 168 GYGQRGR---VEEARKL 181
            +   GR   V + RKL
Sbjct: 584 MHISAGRWKDVSKVRKL 600


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 176/551 (31%), Positives = 291/551 (52%), Gaps = 60/551 (10%)

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------------- 117
           +++ E++   R+   +   NV SWNA I G++++GD+      + RM             
Sbjct: 102 SESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTY 161

Query: 118 -------PGRDSASL--------------------SALVSGLIQNGELDEAARVLVKCGS 150
                   G+ S+ L                    +A ++ L+  GEL  A  V  K   
Sbjct: 162 PLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRV 221

Query: 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
           R     DLV  +N++I G  +RG   EA K++ ++           + + N ++   MI 
Sbjct: 222 R-----DLV-TWNSMITGCVKRGLAIEAIKIYKEMEAE--------KVRPNEITMIGMIS 267

Query: 211 CYAKAGDVVSARE----IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT 266
             ++  D+   +E    I E  LE      N ++  Y+   ++  A  LF  M     ++
Sbjct: 268 SCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVS 327

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
           W  MV GYA+ G L++A +   ++P+K++V WN++I+GC   K  + A+ LF +MQ+   
Sbjct: 328 WTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTI 387

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARI 385
           +PD+ T  + LS  S +  L +G+ IH  + +  +  DV +  AL+ MYA+CG I  A  
Sbjct: 388 EPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQ 447

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +FEE+   +N ++W A+I G A HG A +AL  F  M    ++P  ITF+ VLSAC H G
Sbjct: 448 VFEEIPQ-RNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGG 506

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           LVEEGR++F  M +++ + P+++H++ +VD++GR G LE+A +L+K MP   D AV GAL
Sbjct: 507 LVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGAL 566

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
             ACRV+ NV++ +  A  L++++P++S  YVLL +MY++   W +A   R LM    ++
Sbjct: 567 FFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVE 626

Query: 566 KPTGYSWVDFS 576
           K  G S V+ +
Sbjct: 627 KTPGCSLVEIN 637



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 114/487 (23%), Positives = 198/487 (40%), Gaps = 98/487 (20%)

Query: 7   KRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG--SGFLEEARYLF--DIMP------ 56
           + +E+    ++   + + +V SWN  I GY+ S     GF+   R L    + P      
Sbjct: 103 ESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYP 162

Query: 57  ---------------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
                                      E D    N  I+     GE+  A  +FN    R
Sbjct: 163 LLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVR 222

Query: 90  NVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVL 145
           ++V+WN+MI+G ++ G    AI+ +  M       +  ++  ++S   Q  +L+      
Sbjct: 223 DLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKE-- 280

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
             C  +  G E  +   N L+  Y + G +  AR LFD +             ++ +VSW
Sbjct: 281 FHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMA------------QKTLVSW 328

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----H 261
            +M++ YA+ G +  AREI  ++ E+    WN +ISG +     +EA  LF +M      
Sbjct: 329 TTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIE 388

Query: 262 PDTLT------------------W-----------------NAMVSGYAQIGNLELALDF 286
           PD +T                  W                  A+V  YA+ GN+  AL  
Sbjct: 389 PDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQV 448

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIV 344
           F+ +PQ+N ++W ++I G   + + + A+  F +M   G  PD  TF  +LS     G+V
Sbjct: 449 FEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLV 508

Query: 345 DLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           +        +M +K  V P +   + ++ +  R G + EA  + + M +  +     A+ 
Sbjct: 509 E-EGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALF 567

Query: 404 GGCASHG 410
             C  +G
Sbjct: 568 FACRVYG 574



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 115/263 (43%), Gaps = 51/263 (19%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           YVK  E+  AR LFD M Q+ +VSW  M+ GY      GFL+ AR +   +PE+  V WN
Sbjct: 304 YVKCGELLTARVLFDNMAQKTLVSWTTMVLGYAR---FGFLDVAREILYKIPEKSVVPWN 360

Query: 65  TVISGYAKTGEMEEALRLFNSMPAR----------------------------------- 89
            +ISG  +  + +EAL LF+ M  R                                   
Sbjct: 361 AIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERH 420

Query: 90  ----NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
               +V    A++  + + G++A A++ F+ +P R+  + +A++ GL  +G   +A    
Sbjct: 421 KLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYF 480

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
            K        +++   +  ++      G VEE RK F ++       + NV  K  +  +
Sbjct: 481 SKMIHIGIVPDEI--TFLGVLSACCHGGLVEEGRKYFSEM-----SSKFNVSPK--LKHY 531

Query: 206 NSMIMCYAKAGDVVSAREIFEQM 228
           + M+    +AG +  A E+ + M
Sbjct: 532 SCMVDLLGRAGHLEEAEELVKNM 554



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 104/233 (44%), Gaps = 47/233 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           M+ GY +   +  AR++  ++P++ VV WN +ISG + ++     +EA  LF  M  R  
Sbjct: 331 MVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQG---KEALALFHEMQIRTI 387

Query: 59  --------DCVT------------W-----------------NTVISGYAKTGEMEEALR 81
                   +C++            W                   ++  YAK G +  AL+
Sbjct: 388 EPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQ 447

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGE 137
           +F  +P RN ++W A+I G   +G+  +A+ +F +M       D  +   ++S     G 
Sbjct: 448 VFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGL 507

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           ++E  +   +  S+ +    L + Y+ ++   G+ G +EEA +L   +P+  D
Sbjct: 508 VEEGRKYFSEMSSKFNVSPKL-KHYSCMVDLLGRAGHLEEAEELVKNMPMAAD 559


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 196/653 (30%), Positives = 316/653 (48%), Gaps = 128/653 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSR-------------GSGFLEE 47
           +++ Y        AR++FDEMP RDVVSWN ++S +++++              SG    
Sbjct: 117 LVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRSGVPVN 176

Query: 48  ARYLFDIMPE---------------------RDCVT--WNTVISGYAKTGEMEEALRLFN 84
              L  ++P                       D +    N ++  Y K G +E ++++F 
Sbjct: 177 VASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFE 236

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNGELDE 140
            MP RN VSWN+ I  FL  G   + +  F  M  R     S +LS+L+  L++ G  D 
Sbjct: 237 GMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFDL 296

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
              V                       GY     ++ A +L                   
Sbjct: 297 GREVH----------------------GY----SIKRAMEL------------------- 311

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           +I   NS++  YAK G +  A  +FE++  R+  SWN MI+  +      EA  L +KM 
Sbjct: 312 DIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQ 371

Query: 261 H----PDTLT----------------------W-------------NAMVSGYAQIGNLE 281
                P+++T                      W             NA++  YA+ G L 
Sbjct: 372 KDGECPNSITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLR 431

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
           LA   F  + +K+ VS+N++I G   +     ++ LF Q+   G + D  +F   L+  +
Sbjct: 432 LAQSIFD-LSEKDDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACT 490

Query: 342 GIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +     G +IH ++ + ++ + P + N L+ +Y + G +  A  IF  +K  K+V SWN
Sbjct: 491 NLSSFKQGKEIHGVLVRRLLSNHPFLANTLLGLYTKGGMLDTASKIFNRIKE-KDVASWN 549

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
            MI G   HG    A  LF  M+   V   ++++I+VLS C+H GLVE G+++F  M+ +
Sbjct: 550 NMIMGYGMHGQIDAAFHLFDLMKDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQ 609

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
             +EP+  H+A +VD++GR G+L +++++I  MPF  +  VWGALLGACR+H N+ELAQ 
Sbjct: 610 -NLEPQQMHYACMVDLLGRSGQLTESVEIILDMPFHANSDVWGALLGACRIHGNIELAQY 668

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           AA+ L +++PE+S  Y +L NMYA+ GRW++A+++R LMKS  ++K   YSWV
Sbjct: 669 AADHLFELKPEHSGYYSVLRNMYAEAGRWNEAHKIRTLMKSRKVQKNPAYSWV 721



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 147/491 (29%), Positives = 237/491 (48%), Gaps = 67/491 (13%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D    NT+++ YA  G   +A R+F+ MPAR+VVSWN+++S FL N       + FD   
Sbjct: 110 DVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLAN-------KMFDD-- 160

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGG--------------EDLVRAYNT 164
               A LS + SG+  N  +     V+  CG   +GG              + +V   N 
Sbjct: 161 -ARQALLSMMRSGVPVN--VASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNA 217

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           L+  YG+ G VE + K+F+ +P            +RN VSWNS I C+  AG       +
Sbjct: 218 LVDMYGKFGHVEASMKVFEGMP------------ERNEVSWNSAIGCFLNAGLYGDVLAL 265

Query: 225 FEQMLERDTFSWNTMIS---------GY------IHVLDMEEASNLFVKMPHPDTLTWNA 269
           F  M ER     +  +S         GY      +H   ++ A  L       D    N+
Sbjct: 266 FRGMSERGFMPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMEL-------DIFVANS 318

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
           +V  YA+ G+LE A   F+++  +N+VSWN+MIA    N     A  L I+MQ +GE P+
Sbjct: 319 LVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPN 378

Query: 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFE 388
             T  ++L   S +  L  G QIH    +T ++ D+ I+NALI MYA+CG +  A+ IF+
Sbjct: 379 SITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFD 438

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
             +  K+ VS+N +I G +   ++ E+L LFK + S  +    I+F+  L+AC +    +
Sbjct: 439 LSE--KDDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFK 496

Query: 449 EGRQHFKSMVNE-YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           +G++    +V       P + +  +L+ +  + G L+ A  +   +  E D A W  ++ 
Sbjct: 497 QGKEIHGVLVRRLLSNHPFLAN--TLLGLYTKGGMLDTASKIFNRIK-EKDVASWNNMIM 553

Query: 508 ACRVHNNVELA 518
              +H  ++ A
Sbjct: 554 GYGMHGQIDAA 564



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 8/162 (4%)

Query: 349 GMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G+++H    ++  + DV   N L+  YA CG   +AR +F+EM   ++VVSWN+++    
Sbjct: 95  GLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMP-ARDVVSWNSLVSSFL 153

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF--KSMVNEYGIEP 465
           ++    +A +   SM    V     + +SV+ AC   G+ +EG        +V + G++ 
Sbjct: 154 ANKMFDDARQALLSMMRSGVPVNVASLVSVVPAC---GVEQEGGFGLGVHGLVLKTGLDS 210

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
            +    +LVD+ G+ G +E +M + +GMP E ++  W + +G
Sbjct: 211 IVNLGNALVDMYGKFGHVEASMKVFEGMP-ERNEVSWNSAIG 251


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 237/373 (63%), Gaps = 6/373 (1%)

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEEASNLFVKMPHP 262
           S++  Y K G++    ++F++  +R+       WN +I+G   V D+ +A++LF  MP  
Sbjct: 178 SLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPER 237

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           +  +WN++++G+ + G+L+ A + F +MP+KN+VSW +MI G   N D+E A+ +F +M 
Sbjct: 238 NAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRML 297

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIV 381
            EG +P+  T  S L   + I  L +G +IH  ++      +  I  AL+ MYA+CG I 
Sbjct: 298 EEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIK 357

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
            A  +F E K  K++++W+ MI G A HG   +AL+ F  M+S  + P  + F+++L+AC
Sbjct: 358 SASRVFVETKG-KDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTAC 416

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
           +H+G V++G   F+SM  +Y IEP ++H+  +VD++GR GRL++A+  I+ MP  PD  +
Sbjct: 417 SHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVI 476

Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
           WGAL  ACR H N+E+A++ AE L+++EP++   YV L N+YA VGRW+D   VR LMK+
Sbjct: 477 WGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKN 536

Query: 562 NNIKKPTGYSWVD 574
             ++K  G+S+++
Sbjct: 537 RGVEKDPGWSYIE 549



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 171/356 (48%), Gaps = 40/356 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRD----VVSWNVMISGYISSRGSGFLEEARYLFDIMP 56
           ++  YVK  E+    +LFDE PQR+    ++ WNV+I+G       G L +A  LF+ MP
Sbjct: 179 LVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKV---GDLSKAASLFEAMP 235

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           ER+  +WN++I+G+ + G+++ A  LF  MP +NVVSW  MI+GF QNGD   A+  F R
Sbjct: 236 ERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWR 295

Query: 117 M-----PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG-YG 170
           M        D   +SAL++   + G L    R+     S    G  L R   T +V  Y 
Sbjct: 296 MLEEGVRPNDLTVVSALLA-CTKIGALQVGERIHNYLSS---NGFQLNRGIGTALVDMYA 351

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-- 228
           + G ++ A ++F +               +++++W+ MI  +A  G    A + F +M  
Sbjct: 352 KCGNIKSASRVFVETK------------GKDLLTWSVMIWGWAIHGCFDQALQCFVKMKS 399

Query: 229 --LERDTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLE 281
             +  D   +  +++   H  ++++  N F  M       P    +  +V    + G L+
Sbjct: 400 AGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLD 459

Query: 282 LALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA-IKLFIQMQVEGEKPDRHTFSS 335
            AL F + MP   + V W ++   C  +K+ E A +     +Q+E + P  + F S
Sbjct: 460 EALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLS 515



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 159/364 (43%), Gaps = 57/364 (15%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARN----VVSWNAMISGFLQNGDVANAIE 112
           E D     +++  Y K GE+   L+LF+  P RN    ++ WN +I+G  + GD++ A  
Sbjct: 170 EFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAAS 229

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
            F+ MP R++ S ++L++G ++NG+LD A  + V+        E  V ++ T+I G+ Q 
Sbjct: 230 LFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQM------PEKNVVSWTTMINGFSQN 283

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           G  E+A  +F ++       E  VR   N ++  S ++   K G  +   E     L  +
Sbjct: 284 GDHEKALSMFWRML------EEGVR--PNDLTVVSALLACTKIG-ALQVGERIHNYLSSN 334

Query: 233 TFSWN-----TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
            F  N      ++  Y    +++ AS +FV+    D LTW+ M+ G+A  G  + AL  F
Sbjct: 335 GFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCF 394

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVD 345
            +M                               +  G  PD   F +IL+    SG VD
Sbjct: 395 VKM-------------------------------KSAGINPDEVIFLAILTACSHSGNVD 423

Query: 346 LHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             L       +  ++ P +     ++ +  R G + EA    + M +  + V W A+   
Sbjct: 424 QGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCA 483

Query: 406 CASH 409
           C +H
Sbjct: 484 CRAH 487


>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
 gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
          Length = 547

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 177/507 (34%), Positives = 267/507 (52%), Gaps = 74/507 (14%)

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALV 129
           G    A R+F  +PA N+   NAMI  + QN    +A+E + RM    P   S       
Sbjct: 56  GRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSS------- 108

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           SG    G+      +L  CG                 +   Q GR   A          C
Sbjct: 109 SGGFSVGDRFTYPFLLKACGG----------------LAASQLGRQVHAHVARS----GC 148

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
           +          + +  NS+I  Y + GD+  AR++F+ M E+D  SWNT+IS +  +  M
Sbjct: 149 E---------SHAIVQNSLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQM 199

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            +A  LF  MP    ++W A+VSGY  +G+                              
Sbjct: 200 RKARELFHSMPDKTVVSWTALVSGYTAVGD------------------------------ 229

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINN 368
            + GA+++F QMQ+EG +PD  +  ++L   + +  L LG  I+    K  ++  + I N
Sbjct: 230 -FAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICN 288

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM-RSFKV 427
           AL+ MYA+CG I EA  +F  M   K+V+SW+  IGG A+HG A EA++LF+ M R  +V
Sbjct: 289 ALMEMYAKCGCIEEALQLFHGMS-EKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRV 347

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
           +P  ITF+ +LSAC+HAGL++EG ++F  M  EYG+EP +EH+  +VD++GR GR++ A+
Sbjct: 348 MPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRAL 407

Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
           D I GMP  PD  +WG+LL ACR H++V+ A VAAE L+++EPE+    V+L N+YA  G
Sbjct: 408 DTIGGMPIPPDGKIWGSLLSACRSHSDVDTAVVAAERLVELEPEDVGNLVMLANVYAAAG 467

Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVD 574
           RW +    R  ++S + +K  G S ++
Sbjct: 468 RWGNVASTRKEIRSRSTRKTPGCSMIE 494



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 140/288 (48%), Gaps = 29/288 (10%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G L  AR +FD M E+D V+WNT+IS +A+ G+M +A  LF+SMP + VVSW A++SG+ 
Sbjct: 166 GDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYT 225

Query: 103 QNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
             GD A A+E F +M       D  S+ A++    Q G L+    +   C      G+  
Sbjct: 226 AVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGK-- 283

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           +   N L+  Y + G +EEA +LF  +             +++++SW++ I   A  G  
Sbjct: 284 IYICNALMEMYAKCGCIEEALQLFHGMS------------EKDVISWSTAIGGLAAHGRA 331

Query: 219 VSAREIFEQM-----LERDTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWN 268
             A ++FE M     +  +  ++  ++S   H   ++E    F +M       P    + 
Sbjct: 332 REAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYG 391

Query: 269 AMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAI 315
            +V    + G ++ ALD    MP   +   W S+++ C ++ D + A+
Sbjct: 392 CVVDLLGRSGRIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTAV 439



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 116/254 (45%), Gaps = 15/254 (5%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E   +  N++I  Y + G++  A ++F+ M  ++ VSWN +IS   + G +  A E F  
Sbjct: 149 ESHAIVQNSLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHS 208

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           MP +   S +ALVSG    G+   A  V  +   + +G E    +   ++    Q G +E
Sbjct: 209 MPDKTVVSWTALVSGYTAVGDFAGAVEVFRQ--MQMEGFEPDDVSIVAVLPACAQLGALE 266

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
             R ++      C++          I   N+++  YAK G +  A ++F  M E+D  SW
Sbjct: 267 LGRWIY----AYCNKHG----MLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISW 318

Query: 237 NTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           +T I G        EA  LF  M       P+ +T+  ++S  +  G L+  L +F RM 
Sbjct: 319 STAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMK 378

Query: 292 QKNLVSWNSMIAGC 305
           ++  V  +    GC
Sbjct: 379 EEYGVEPSVEHYGC 392



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 114/271 (42%), Gaps = 53/271 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----------------------- 37
           +IS + +  +M KAR+LF  MP + VVSW  ++SGY                        
Sbjct: 189 LISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPD 248

Query: 38  ---------SSRGSGFLEEARYLFDIMPERDCV----TWNTVISGYAKTGEMEEALRLFN 84
                    +    G LE  R+++    +   +      N ++  YAK G +EEAL+LF+
Sbjct: 249 DVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFH 308

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGR---DSASLSALVSGLIQNGELD 139
            M  ++V+SW+  I G   +G    A++ F+ M   GR   +  +   L+S     G LD
Sbjct: 309 GMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLD 368

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           E  R   +      G E  V  Y  ++   G+ GR++ A      +P+  D   G +   
Sbjct: 369 EGLRYFDRMKEE-YGVEPSVEHYGCVVDLLGRSGRIQRALDTIGGMPIPPD---GKI--- 421

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
                W S++       DV +A    E+++E
Sbjct: 422 -----WGSLLSACRSHSDVDTAVVAAERLVE 447


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 179/562 (31%), Positives = 288/562 (51%), Gaps = 56/562 (9%)

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW----NAMISGFLQNGDVANAIEF 113
           RD      VI  YAKT  +    +L   +            N +++ + + G++ +A++ 
Sbjct: 3   RDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKL 62

Query: 114 FDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           FD MP R+  S +A++SGL QN +  EA R    CG R  G      A+++ I      G
Sbjct: 63  FDTMPQRNLVSWTAMISGLSQNSKFSEAIRTF--CGMRICGEVPTQFAFSSAIRACASLG 120

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
            +E  +++     +    G G+  F    V  N   M Y+K G +  A ++FE+M  +D 
Sbjct: 121 SIEMGKQMH---CLALKFGIGSELF----VGSNLEDM-YSKCGAMFDACKVFEEMPCKDE 172

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMP--------------------------------- 260
            SW  MI GY  + + EEA   F KM                                  
Sbjct: 173 VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSS 232

Query: 261 ------HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ-KNLVSWNSMIAGCETNKDYEG 313
                   D    NA+   Y++ G++E A + F    + +N+VS+  +I G    +  E 
Sbjct: 233 VVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 292

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALIT 372
            + +F++++ +G +P+  TFSS++   +    L  G Q+H  V K    + P +++ L+ 
Sbjct: 293 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 352

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY +CG +  A   F+E+      ++WN+++     HG   +A++ F+ M    V P  I
Sbjct: 353 MYGKCGLLEHAIQAFDEIGD-PTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAI 411

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           TFIS+L+ C+HAGLVEEG  +F SM   YG+ P  EH++ ++D++GR GRL++A + I  
Sbjct: 412 TFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINR 471

Query: 493 MPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552
           MPFEP+   W + LGACR+H + E+ ++AAE L+K+EP+NS   VLL N+YA+  +W+D 
Sbjct: 472 MPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDV 531

Query: 553 NEVRLLMKSNNIKKPTGYSWVD 574
             VR+ M+  N+KK  GYSWVD
Sbjct: 532 RSVRMRMRDGNVKKLPGYSWVD 553



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 120/465 (25%), Positives = 195/465 (41%), Gaps = 73/465 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDI-----M 55
           +++ Y K  E+  A KLFD MPQR++VSW  MISG   S+ S F E  R    +     +
Sbjct: 46  LVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGL--SQNSKFSEAIRTFCGMRICGEV 103

Query: 56  PE--------RDCVTWNTVISG-------------------------YAKTGEMEEALRL 82
           P         R C +  ++  G                         Y+K G M +A ++
Sbjct: 104 PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKV 163

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-SASLSALVSGLIQNGELDEA 141
           F  MP ++ VSW AMI G+ + G+   A+  F +M   + +     L S L   G L   
Sbjct: 164 FEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKAC 223

Query: 142 A------RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
                    +VK G   D     +   N L   Y + G +E A  +F  I   C      
Sbjct: 224 KFGRSVHSSVVKLGFESD-----IFVGNALTDMYSKAGDMESASNVFG-IDSEC------ 271

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIF----EQMLERDTFSWNTMISGYIHVLDMEE 251
               RN+VS+  +I  Y +   +     +F     Q +E + F+++++I    +   +E+
Sbjct: 272 ----RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQ 327

Query: 252 ASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
            + L  ++       D    + +V  Y + G LE A+  F  +     ++WNS+++    
Sbjct: 328 GTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQ 387

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVP 365
           +   + AIK F +M   G KP+  TF S+L+  S  G+V+  L        T  V+P   
Sbjct: 388 HGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEE 447

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
             + +I +  R G + EA+     M    N   W + +G C  HG
Sbjct: 448 HYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHG 492


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 174/535 (32%), Positives = 302/535 (56%), Gaps = 38/535 (7%)

Query: 57  ERDCVTWNTVISGYAKTG-EMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD 115
           E D    N++++ Y K G +  E  ++F+ +  ++V+SW +MISG+++ G   N++E F 
Sbjct: 150 EFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFW 209

Query: 116 RMPGR----DSASLSALVSGLIQNGELDEAARVL--VKCGSRCDGGEDLVRAYNTLIVGY 169
           +M       ++ +LSA++    + G+L +  R+   V  G   D    +  A   LI  +
Sbjct: 210 KMLAYGVEPNAFTLSAVIKACSELGDL-KLGRIFHGVVLGRGFDSNYVIASA---LIDMH 265

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM- 228
           G+   +++AR+LFD++             + + + W S+I    +      A   F  M 
Sbjct: 266 GRNCALDDARQLFDEL------------LEPDAICWTSIISALTRNDFFDEALRFFYSMQ 313

Query: 229 ----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNL 280
               +  D F++ T+++   ++  +++   +  K+       + +  +++V  Y + G++
Sbjct: 314 RDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSV 373

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
             +   F RMP KN VSW++++ G   N D++  I++F +M    EK D + F +IL   
Sbjct: 374 GESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKM----EKVDLYCFGTILRTC 429

Query: 341 SGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           +G+  +  G ++H Q + K    DV + +AL+ +YA+CG I  A+ IF++M + +N+++W
Sbjct: 430 AGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPV-RNLITW 488

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N+MIGG A +G   EAL +F  M    + P YI+FI +L AC+H GLV+EGR++F SM  
Sbjct: 489 NSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTK 548

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
           +YGI+  IEH++ +VD++GR G LE+A  LI+   F  D ++W ALLGAC    N E+A+
Sbjct: 549 DYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAE 608

Query: 520 VAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             A+ +M++EP+    YVLL N+Y  VGRW+DA  +R LMK   + K  G SW++
Sbjct: 609 RIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIE 663



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 213/447 (47%), Gaps = 63/447 (14%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYIS-SRGSGFLEEARYLFDIMPERDCVTWNTVIS 68
           +  + RK+FD +  +DV+SW  MISGY+   +    LE    +     E +  T + VI 
Sbjct: 169 DFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIK 228

Query: 69  GYAKTGEMEEALRLFNSMPA-----RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
             ++ G+++   R+F+ +        N V  +A+I    +N  + +A + FD +   D+ 
Sbjct: 229 ACSELGDLKLG-RIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAI 287

Query: 124 SLSALVSGLIQNGELDEAAR--------------------VLVKCGS--RCDGGEDL--- 158
             ++++S L +N   DEA R                    VL  CG+  R   G+++   
Sbjct: 288 CWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAK 347

Query: 159 ---------VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
                    V   ++L+  YG+ G V E++++FD++P+            +N VSW++++
Sbjct: 348 VITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPI------------KNSVSWSALL 395

Query: 210 MCYAKAGDVVSAREIFEQMLERDTFSWNTMI---SGYIHVLDMEEASNLFV-KMPHPDTL 265
             Y + GD  S  +IF +M + D + + T++   +G   V   +E    ++ K    D +
Sbjct: 396 GGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVI 455

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
             +A+V  YA+ G +E A   F +MP +NL++WNSMI G   N   E A+++F QM  EG
Sbjct: 456 VESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEG 515

Query: 326 EKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVIPDVPINN--ALITMYARCGAIV 381
            KPD  +F  IL   S  G+VD   G +    +TK     V I +   ++ +  R G + 
Sbjct: 516 IKPDYISFIGILFACSHRGLVD--EGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLE 573

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCAS 408
           EA I+ E      +   W A++G C +
Sbjct: 574 EAEILIETSDFRDDSSLWAALLGACTT 600



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 145/366 (39%), Gaps = 93/366 (25%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP----------------- 87
           L++AR LFD + E D + W ++IS   +    +EALR F SM                  
Sbjct: 271 LDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLT 330

Query: 88  -----------------------ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
                                    NVV  ++++  + + G V  +   FDRMP ++S S
Sbjct: 331 ACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVS 390

Query: 125 LSALVSGLIQNGELDEAARVL-----------------------------VKCGSRCDGG 155
            SAL+ G  QNG+     ++                              V C     GG
Sbjct: 391 WSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGG 450

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
              V   + L+  Y + G +E A+ +FD++PV            RN+++WNSMI  +A+ 
Sbjct: 451 WRDVIVESALVDLYAKCGCIEYAQTIFDQMPV------------RNLITWNSMIGGFAQN 498

Query: 216 GDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT----- 266
           G    A  IF QM++     D  S+  ++    H   ++E    F+ M     +      
Sbjct: 499 GRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEH 558

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           ++ MV    + G LE A    +    ++  S W +++  C T  +YE A +  I  +V  
Sbjct: 559 YSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAER--IAKRVME 616

Query: 326 EKPDRH 331
            +PD H
Sbjct: 617 LEPDYH 622



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 97/178 (54%), Gaps = 5/178 (2%)

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGA-IVEARIIFEEM 390
           ++S+L   + ++  + G+QIH  V K+ +  D  + N+L+T+Y + G    E R +F+ +
Sbjct: 121 YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGL 180

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
             +K+V+SW +MI G    G    +LELF  M ++ V P   T  +V+ AC+  G ++ G
Sbjct: 181 -FVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLG 239

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           R  F  +V   G +      ++L+D+ GR+  L+DA  L   +  EPD   W +++ A
Sbjct: 240 RI-FHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDEL-LEPDAICWTSIISA 295



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 97/219 (44%), Gaps = 37/219 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           ++  Y K   + +++++FD MP ++ VSW+ ++ GY  +                     
Sbjct: 363 LVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCF 422

Query: 40  ----RGSGFLEEARYLFDIMPE-------RDCVTWNTVISGYAKTGEMEEALRLFNSMPA 88
               R    L   R   ++  +       RD +  + ++  YAK G +E A  +F+ MP 
Sbjct: 423 GTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPV 482

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV 144
           RN+++WN+MI GF QNG    A+  F++M       D  S   ++      G +DE    
Sbjct: 483 RNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREY 542

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
            +   ++  G +  +  Y+ ++   G+ G +EEA  L +
Sbjct: 543 FISM-TKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIE 580



 Score = 42.0 bits (97), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 12/140 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++  Y K   +  A+ +FD+MP R++++WN MI G+ +  G G  EEA  +F+ M +   
Sbjct: 460 LVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGF-AQNGRG--EEALRIFNQMVKEGI 516

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
             D +++  ++   +  G ++E    F SM         +  ++ M+    + G +  A 
Sbjct: 517 KPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAE 576

Query: 112 EFFDRMPGRDSASLSALVSG 131
              +    RD +SL A + G
Sbjct: 577 ILIETSDFRDDSSLWAALLG 596


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 192/711 (27%), Positives = 329/711 (46%), Gaps = 136/711 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS------------------ 42
           +++ Y K   +  AR++FD MP RD+V+W  MIS + ++  S                  
Sbjct: 91  LLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPN 150

Query: 43  GFL-----------EEARYLFDIMPE-------RDCVTWNTVISGYAKTGEMEEALRLFN 84
           GF              +++   +  +        D    ++++  Y   GE++ A  +  
Sbjct: 151 GFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLL 210

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-DSASLSALVS--------GLIQN 135
            +P R+ VSWNA+++G+ ++GD    +   +++    D  S   L +        GL + 
Sbjct: 211 GLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKY 270

Query: 136 GELDEAARV-------------LVKCGSRCDGGEDLVRAY-----------NTLIVGYGQ 171
           G+   A+ +             LV+  SRC   E+    +           + +I  + +
Sbjct: 271 GQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDR 330

Query: 172 RGRVEEARKLFDKIP--------------VNCDRGEGNVRFKRNIVSW------------ 205
                EA  LF K+                      G+    R++ ++            
Sbjct: 331 HDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGV 390

Query: 206 -NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP---- 260
            ++++  Y K G V  A   F+ + E DTFSWNT++S +    + E+   +F +M     
Sbjct: 391 GDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGF 450

Query: 261 -----------------------------------HPDTLTWNAMVSGYAQIGNLELALD 285
                                                DT     +V  YAQ G    A  
Sbjct: 451 SANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACL 510

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F+++ +++  SW  +++G    ++ E  ++ F  M  E  +P   T +  LS+ S +  
Sbjct: 511 VFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMAS 570

Query: 346 LHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
           L  G+Q+H    K+      ++ AL+ MY +CG I +A ++F E +  ++ V+WN +I G
Sbjct: 571 LGSGLQLHSWAIKSGWNSSVVSGALVDMYVKCGNIADAEMLFHESET-RDQVAWNTIICG 629

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
            + HG   +AL+ FK M      P  ITF+ VLSAC+HAGL+ EGR++FKS+ + YGI P
Sbjct: 630 YSQHGHGYKALDAFKQMVDEGKRPDGITFVGVLSACSHAGLLNEGRKYFKSLSSIYGITP 689

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
            +EH+A +VDI+ + GRL +A  LI  MP  PD ++W  +LGACR+H N+E+A+ AAE L
Sbjct: 690 TMEHYACMVDILSKAGRLVEAESLINQMPLAPDSSIWRTILGACRIHRNIEIAERAAERL 749

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
            ++EP +++  +LL N+YAD+GRW D   VR ++  + +KK  G SW++ +
Sbjct: 750 FELEPHDASSSILLSNIYADLGRWSDVTRVRNILLDHGVKKEPGCSWIEIN 800



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 117/517 (22%), Positives = 210/517 (40%), Gaps = 87/517 (16%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM- 117
           D    +++++ Y K G + +A R+F+ MP R++V+W AMIS     GD   A++ F RM 
Sbjct: 84  DTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMN 143

Query: 118 ------PGRDSASL--------------------------------SALVSGLIQNGELD 139
                  G   AS+                                S+LV      GELD
Sbjct: 144 QEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELD 203

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
            A  VL+    R D       ++N L+ GY + G       + +K+  +   G+   ++ 
Sbjct: 204 AAETVLLGLPERSD------VSWNALLNGYARHGDYRRVMIIIEKLVAS---GDEISKYT 254

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
              V    M +  AK G  V A  + ++ LE D    + ++  Y   L  EEA  +F+++
Sbjct: 255 LPTVLKCCMELGLAKYGQSVHA-SVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRI 313

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
             PD +  +AM+S +                  ++ ++W               A+ LF+
Sbjct: 314 DEPDVVHCSAMISCF-----------------DRHDMAWE--------------ALDLFV 342

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCG 378
           +M   G KP+ + F  I  ++S   D +L   +H  + K+    +  + +A++ MY + G
Sbjct: 343 KMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVG 402

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
           A+ +A + F+ +    +  SWN ++    S     + L +FK M          T++SVL
Sbjct: 403 AVQDATVTFDLIH-EPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVL 461

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
             C     +  G Q   + + + G++   +    LVD+  + G    A  + + +  E D
Sbjct: 462 RCCTSLMNLRFGTQ-VHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLK-ERD 519

Query: 499 KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
              W  ++     +   E A+   E    +  EN  P
Sbjct: 520 AFSWTVIMSG---YAKTEEAEKVVEYFRSMLRENIRP 553



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 152/364 (41%), Gaps = 53/364 (14%)

Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           E  + L     HPDT   +++++ Y + G L  A   F  MP +++V+W +MI+      
Sbjct: 71  ELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAG 130

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INN 368
           D + A+ +F +M  EG  P+  T +S+L   SG        Q+H  V K    D P + +
Sbjct: 131 DSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGS 190

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           +L+  Y  CG +  A  +   +   ++ VSWNA++ G A HG     + + + + +    
Sbjct: 191 SLVEAYTSCGELDAAETVLLGLP-ERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDE 249

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNE-------------------------YGI 463
            +  T  +VL  C   GL + G+    S++                           Y +
Sbjct: 250 ISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEV 309

Query: 464 -----EPRIEHFASLVDIVGRHGRLEDAMDL---IKGMPFEPDKAVWGALLGACRVHNNV 515
                EP + H ++++    RH    +A+DL   + GM  +P+  ++  + G      + 
Sbjct: 310 FIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDA 369

Query: 516 ELAQVAAEALMKVEPENSTPYVLL-------YNMYADVGRWDDANEVRLLMKSNNIKKPT 568
            L +     ++K      + + +L        NMY  VG   DA      +  + I +P 
Sbjct: 370 NLCRSVHAYIVK------SGFAMLKGVGDAILNMYVKVGAVQDAT-----VTFDLIHEPD 418

Query: 569 GYSW 572
            +SW
Sbjct: 419 TFSW 422


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 205/684 (29%), Positives = 327/684 (47%), Gaps = 125/684 (18%)

Query: 6   VKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DCV 61
           +K   + KA    D      ++  ++++   I S   G LE  + L   + +     D V
Sbjct: 19  LKFESLRKAISRLDLTTTSPLIKSSLLLKACIRS---GNLELGKLLHHKLIDSGLPLDSV 75

Query: 62  TWNTVISGYAKTGEMEEALRLFNSM--PARNVVSWNAMISGFLQNGDVANAIEFFDRM-- 117
             N++I+ Y+K G+ E AL +F +M    R++VSW+A+IS F  N   + A+  F  M  
Sbjct: 76  LLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQ 135

Query: 118 ----------------------PGRDSASLSALVSGLIQNGELDEAARVLVKCG---SRC 152
                                 P   +  L A+ + L++ G  D  + V V C       
Sbjct: 136 CSRNIIYPNEYCFTALLRSCSNPLFFTTGL-AIFAFLLKTGYFD--SHVCVGCALIDMFT 192

Query: 153 DGGEDLVRA--------------YNTLIVGYGQRGRVEEARKLFDKIPVN---------- 188
            GG D+  A              +  +I  Y Q G +++A  LF ++ V+          
Sbjct: 193 KGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLT 252

Query: 189 -----CDRGEGNVRFKRNIVSW-------------NSMIMCYAKAGDVVSAREIFEQMLE 230
                C   E      + + SW              +++  YAK+  V ++R+IF  ML 
Sbjct: 253 SLLSACVELEF-FSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLH 311

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW------------------- 267
            +  SW  +ISGY+     +EA  LF  M H    P+  T+                   
Sbjct: 312 HNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQL 371

Query: 268 ----------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
                           N++++ YA+ G +E A   F  + +KNL+S+N+         D 
Sbjct: 372 HGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDS 431

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNAL 370
           + +    ++    G  P   T++ +LS ++ I  +  G QIH ++ K+    ++ INNAL
Sbjct: 432 DESFNHEVEHTGVGASP--FTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNAL 489

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           I+MY++CG    A  +F +M   +NV++W ++I G A HGFAT+ALELF  M    V P 
Sbjct: 490 ISMYSKCGNKEAALQVFNDMGY-RNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPN 548

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            +T+I+VLSAC+H GL++E  +HF SM   + I PR+EH+A +VD++GR G L +A++ I
Sbjct: 549 EVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFI 608

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
             MPF+ D  VW   LG+CRVH N +L + AA+ +++ EP +   Y+LL N+YA  GRWD
Sbjct: 609 NSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWD 668

Query: 551 DANEVRLLMKSNNIKKPTGYSWVD 574
           D   +R  MK   + K TGYSW++
Sbjct: 669 DVAALRKSMKQKKLIKETGYSWIE 692



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 106/454 (23%), Positives = 194/454 (42%), Gaps = 89/454 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           ++  Y K   +  +RK+F+ M   +V+SW  +ISGY+ SR     +EA  LF  M     
Sbjct: 289 LVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQE---QEAIKLFCNMLHGHV 345

Query: 58  -RDCVTW-----------------------------------NTVISGYAKTGEMEEALR 81
             +C T+                                   N++I+ YA++G ME A +
Sbjct: 346 TPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARK 405

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM-----PGRDSASLSALVSGLIQNG 136
            FN +  +N++S+N        N    ++ E F+        G    + + L+SG    G
Sbjct: 406 AFNILFEKNLISYNTAADA---NAKALDSDESFNHEVEHTGVGASPFTYACLLSGAACIG 462

Query: 137 EL---DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
            +   ++   ++VK G     G +L    N LI  Y + G  E A ++F+      D G 
Sbjct: 463 TIVKGEQIHALIVKSGF----GTNLC-INNALISMYSKCGNKEAALQVFN------DMG- 510

Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMISGYIHVLDM 249
                 RN+++W S+I  +AK G    A E+F +MLE     +  ++  ++S   HV  +
Sbjct: 511 -----YRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLI 565

Query: 250 EEASNLFVKMPHPDTLT-----WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIA 303
           +EA   F  M +  +++     +  MV    + G L  A++F   MP   + + W + + 
Sbjct: 566 DEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLG 625

Query: 304 GCETNKDY---EGAIKLFIQMQVEGEKPDRHTFSSILSMSSG----IVDLHLGMQIHQMV 356
            C  +++    E A K  ++   E   P  +   S L  S G    +  L   M+  +++
Sbjct: 626 SCRVHRNTKLGEHAAKKILER--EPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLI 683

Query: 357 TKTVIPDVPINNALITMYARCGAIVEARIIFEEM 390
            +T    + ++N +   +    +  +AR I++E+
Sbjct: 684 KETGYSWIEVDNQVHKFHVGDTSHPQARKIYDEL 717


>gi|302820136|ref|XP_002991736.1| hypothetical protein SELMODRAFT_40989 [Selaginella moellendorffii]
 gi|300140417|gb|EFJ07140.1| hypothetical protein SELMODRAFT_40989 [Selaginella moellendorffii]
          Length = 589

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 179/581 (30%), Positives = 308/581 (53%), Gaps = 43/581 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M+S   +  + ++A+     +PQ  +V+WN MI G+  +R   FLE A+ LFD    RD 
Sbjct: 35  MVSANAQEGDFSRAKIFLARIPQHSLVAWNAMIGGF--AREGRFLE-AKRLFDAAKVRDV 91

Query: 61  VTWNTVISGYAK-TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD-RMP 118
           V WN +I   A  TG +E+   LF+ +P  +V+SWN M++ + ++G +  A  FFD RM 
Sbjct: 92  VIWNALIHAKAAVTGGIEDVESLFSRIPCWDVISWNEMLAAYTKHGSLNRAKAFFDTRML 151

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR--------AYNTLIVGYG 170
            RD  S + + +           AR++ + G+    G+            ++N++  G  
Sbjct: 152 QRDVFSWNTMAAAF---------ARMVHQSGA---AGKKFFERMPQHNTVSWNSIAQGLS 199

Query: 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
           + G  ++A+ LF+ +              R+ VS   M + YA+ G    A+E+F ++  
Sbjct: 200 ENGLFDDAKSLFESMG------------DRDSVSMIQMAVTYARNGHPEQAQELFSRISP 247

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRM 290
           R    WN ++  Y     + E    F ++P  + +T   ++  Y + G+L  A   F R 
Sbjct: 248 RTVAVWNALLWSYARNGHLSETLATFHRIPMMNRITCTVIIEMYGECGSLIDARKVFDRT 307

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK--PDRHTFSSILSMSSGIVDLHL 348
           P  N+ SWN M+A    N     A+ L  +M+  G    PDR T+  +L   S +  L  
Sbjct: 308 PDPNIFSWNIMLAAYAHNGHSNEALVLSQRMKDSGATVVPDRVTYVILLHACSNLGALRE 367

Query: 349 GMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
           G  IH  V  + +  +V +  A++ MY +CG++ +A+++F++M   K+V+ WN+MI   A
Sbjct: 368 GRMIHASVIASGMESNVVVATAIVNMYGKCGSMGDAKMVFDKMPA-KDVICWNSMISAYA 426

Query: 408 SHGFATEALELFKSMR-SFKVL-PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
            +G    AL+L+  MR S + L P  ITF+S+LS+C+ A  + E   +F+ M+++  I+P
Sbjct: 427 LNGLGKSALDLYARMRHSCRGLKPNRITFVSLLSSCSAANSLREAVFYFQIMIHDCDIQP 486

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
             EH+  L+D++GR G++ +A +LI  MPF P    W +LL AC  H+ VEL + AA+ +
Sbjct: 487 GAEHYHFLIDLLGRSGKVAEAEELINSMPFAPGCGAWMSLLAACERHSKVELGRRAADRV 546

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
            ++EP+N+  Y++L  +Y   G WD+  +++ LM+   +K+
Sbjct: 547 FEMEPKNALAYLMLGKIYVAAGMWDELLQLKKLMEDRGLKR 587



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 134/455 (29%), Positives = 228/455 (50%), Gaps = 40/455 (8%)

Query: 63  WNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS 122
           +N +I+ YA  G +EEA ++F++MP RNVVSWN M+S   Q GD + A  F  R+P    
Sbjct: 1   FNILIASYASAGLLEEAWKIFHAMPGRNVVSWNTMVSANAQEGDFSRAKIFLARIPQHSL 60

Query: 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ-RGRVEEARKL 181
            + +A++ G  + G   EA R+      R     D+V  +N LI       G +E+   L
Sbjct: 61  VAWNAMIGGFAREGRFLEAKRLFDAAKVR-----DVV-IWNALIHAKAAVTGGIEDVESL 114

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE-QMLERDTFSWNTMI 240
           F +IP              +++SWN M+  Y K G +  A+  F+ +ML+RD FSWNTM 
Sbjct: 115 FSRIPC------------WDVISWNEMLAAYTKHGSLNRAKAFFDTRMLQRDVFSWNTMA 162

Query: 241 SGYIHVLDMEEAS--NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
           + +  ++    A+    F +MP  +T++WN++  G ++ G  + A   F+ M  ++ VS 
Sbjct: 163 AAFARMVHQSGAAGKKFFERMPQHNTVSWNSIAQGLSENGLFDDAKSLFESMGDRDSVSM 222

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQ---VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
             M      N   E A +LF ++    V        +++    +S  +   H  + +   
Sbjct: 223 IQMAVTYARNGHPEQAQELFSRISPRTVAVWNALLWSYARNGHLSETLATFHR-IPMMNR 281

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
           +T TVI         I MY  CG++++AR +F+      N+ SWN M+   A +G + EA
Sbjct: 282 ITCTVI---------IEMYGECGSLIDARKVFDRTP-DPNIFSWNIMLAAYAHNGHSNEA 331

Query: 416 LELFKSMR--SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
           L L + M+     V+P  +T++ +L AC++ G + EGR    S++   G+E  +    ++
Sbjct: 332 LVLSQRMKDSGATVVPDRVTYVILLHACSNLGALREGRMIHASVIAS-GMESNVVVATAI 390

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           V++ G+ G + DA  +   MP + D   W +++ A
Sbjct: 391 VNMYGKCGSMGDAKMVFDKMPAK-DVICWNSMISA 424


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 209/608 (34%), Positives = 317/608 (52%), Gaps = 58/608 (9%)

Query: 1    MISGYVKRREMAKARKLFDEMPQRDVV-----SWNVMISGYIS------SRGSGFLEEAR 49
            ++ G VK+++   A K+F EM  +D+V     S+ V++S +         R  G    A 
Sbjct: 827  LMVGLVKQKQGEAAAKVFHEM--KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAH 884

Query: 50   YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVAN 109
             +   + +      N +++ YAK+G + +A  +F  M  ++ VSWN++ISG  QN    +
Sbjct: 885  VIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSED 944

Query: 110  AIEFFDRMPGRDSASLSA---LVSGLIQNGELDEAARVLVKCGSRCDG---GEDL-VRAY 162
            A E F RM  R + S+ +   L+S L     L     +++     CDG   G D  V   
Sbjct: 945  AAESFLRM--RRTGSMPSNFTLISTLSSCASL---GWIMLGEQIHCDGLKLGLDTDVSVS 999

Query: 163  NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA-GDVVSA 221
            N L+  Y + G   E  K+F  +P            + + VSWNS+I   + +   V  A
Sbjct: 1000 NALLALYAETGCFTECLKVFSLMP------------EYDQVSWNSVIGALSDSEASVSQA 1047

Query: 222  REIFEQM------LERDTFSWNTMISGYIHVLDMEEASN----LFVKMP-HPDTLTWNAM 270
             + F +M      L R TF     I   +  L + E S+    L +K     DT   NA+
Sbjct: 1048 VKYFLEMMRGGWGLSRVTF---INILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNAL 1104

Query: 271  VSGYAQIGNLELALDFFKRMPQ-KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
            +S Y + G +      F RM + ++ VSWNSMI+G   N+    A+ L   M  +G++ D
Sbjct: 1105 LSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLD 1164

Query: 330  RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFE 388
              TF+++LS  + +  L  GM++H    +  +  DV + +AL+ MY++CG I  A   FE
Sbjct: 1165 SFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFE 1224

Query: 389  EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT-FISVLSACAHAGLV 447
             M L +NV SWN+MI G A HG   +AL+LF  M      P ++   + VLSAC+H G V
Sbjct: 1225 LMPL-RNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFV 1283

Query: 448  EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
            EEG +HFKSM   Y + PR+EHF+ +VD++GR G+L++  D I  MP +P+  +W  +LG
Sbjct: 1284 EEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLG 1343

Query: 508  ACRVHN--NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
            AC   N  N EL + AAE L+++EP+N+  YVLL NMYA   +W+D  + R  MK   +K
Sbjct: 1344 ACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVK 1403

Query: 566  KPTGYSWV 573
            K  G SWV
Sbjct: 1404 KEAGCSWV 1411



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 155/584 (26%), Positives = 257/584 (44%), Gaps = 104/584 (17%)

Query: 25   DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
            DVV  NV+IS Y S   S    +AR +FD +  R+ ++WN++IS Y++ G+   A  LF+
Sbjct: 681  DVVVCNVLISMYGSCLDSA--NDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFS 738

Query: 85   SMPA---------------------------------------------RNVVSWNAMIS 99
            SM                                               +++   +A++S
Sbjct: 739  SMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVS 798

Query: 100  GFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLV 159
            GF + G   +A   F++M  R+  S++ L+ GL++  + + AA+V  +         D  
Sbjct: 799  GFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD-- 856

Query: 160  RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVV 219
             +Y  L+  + +   +EE R+   ++  +  R   N      +   N ++  YAK+G + 
Sbjct: 857  -SYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLN---DNKVAIGNGLVNMYAKSGAIA 912

Query: 220  SAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP------------------- 260
             A  +FE M+E+D+ SWN++ISG       E+A+  F++M                    
Sbjct: 913  DACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCA 972

Query: 261  -----------HPDTLTW---------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
                       H D L           NA+++ YA+ G     L  F  MP+ + VSWNS
Sbjct: 973  SLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNS 1032

Query: 301  MI-AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
            +I A  ++      A+K F++M   G    R TF +ILS  S +    +  QIH +V K 
Sbjct: 1033 VIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKY 1092

Query: 360  VIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
             +  D  I NAL++ Y +CG + E   IF  M   ++ VSWN+MI G   +    +A++L
Sbjct: 1093 CLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDL 1152

Query: 419  FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH----FASLV 474
               M          TF +VLSACA    +E G +     V+  GI   +E      ++LV
Sbjct: 1153 VWFMMQKGQRLDSFTFATVLSACASVATLERGME-----VHACGIRACMESDVVVGSALV 1207

Query: 475  DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            D+  + GR++ A    + MP   +   W +++     H + E A
Sbjct: 1208 DMYSKCGRIDYASRFFELMPLR-NVYSWNSMISGYARHGHGEKA 1250



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 228/484 (47%), Gaps = 69/484 (14%)

Query: 64   NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
            NT+I+ Y + G++  A +LF+ M  RN+V+W  +ISG+ QNG    A   F  M      
Sbjct: 583  NTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDM------ 636

Query: 124  SLSALVSGLIQNG-ELDEAARVLVKCG--------------SRCDGGEDLVRAYNTLIVG 168
                + +G I N      A R   + G              S+   G D+V   N LI  
Sbjct: 637  ----VRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVV-VCNVLISM 691

Query: 169  YGQ-RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            YG       +AR +FD+I +            RN +SWNS+I  Y++ GD VSA ++F  
Sbjct: 692  YGSCLDSANDARSVFDRIGI------------RNSISWNSIISVYSRRGDXVSAYDLFSS 739

Query: 228  M--------LERDTFSWNTMISGYIHVLDMEEA--SNLFVKMPHP----DTLTWNAMVSG 273
            M         + + +++ ++I+     +D        +  ++       D    +A+VSG
Sbjct: 740  MQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSG 799

Query: 274  YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ-VEGEKPDRH- 331
            +A+ G  + A + F++M  +N+VS N ++ G    K  E A K+F +M+ + G   D + 
Sbjct: 800  FARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYV 859

Query: 332  ----TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD--VPINNALITMYARCGAIVEARI 385
                 FS    +  G      G ++H  V +T + D  V I N L+ MYA+ GAI +A  
Sbjct: 860  VLLSAFSEFSVLEEG---RRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACS 916

Query: 386  IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
            +FE M + K+ VSWN++I G   +  + +A E F  MR    +P+  T IS LS+CA  G
Sbjct: 917  VFELM-VEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLG 975

Query: 446  LVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
             +  G Q H   +  + G++  +    +L+ +    G   + + +   MP E D+  W +
Sbjct: 976  WIMLGEQIHCDGL--KLGLDTDVSVSNALLALYAETGCFTECLKVFSLMP-EYDQVSWNS 1032

Query: 505  LLGA 508
            ++GA
Sbjct: 1033 VIGA 1036



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 181/392 (46%), Gaps = 61/392 (15%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  N+   N++I  Y + GD+ SA+++F++M  R+  +W  +ISGY      +EA   F 
Sbjct: 575 FVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFR 634

Query: 258 KM------PH-----------------------------------PDTLTWNAMVSGYAQ 276
            M      P+                                    D +  N ++S Y  
Sbjct: 635 DMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGS 694

Query: 277 -IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE----KPDRH 331
            + +   A   F R+  +N +SWNS+I+      D   A  LF  MQ EG     KP+ +
Sbjct: 695 CLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEY 754

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKT----VIPDVPINNALITMYARCGAIVEARIIF 387
           TF S+++ +   VD  L + + QM+ +      + D+ + +AL++ +AR G   +A+ IF
Sbjct: 755 TFGSLITAACSSVDFGLCV-LEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIF 813

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
           E+M  ++NVVS N ++ G         A ++F  M+    + +  +++ +LSA +   ++
Sbjct: 814 EQMG-VRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINS-DSYVVLLSAFSEFSVL 871

Query: 448 EEGRQHFKSM---VNEYGI-EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           EEGR+  + +   V   G+ + ++     LV++  + G + DA  + + M  E D   W 
Sbjct: 872 EEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELM-VEKDSVSWN 930

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           +L+      +  E ++ AAE+ +++    S P
Sbjct: 931 SLISGL---DQNECSEDAAESFLRMRRTGSMP 959



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 169/388 (43%), Gaps = 55/388 (14%)

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKM 259
           ++ S+I  Y  +     ARE+  Q ++     + F  NT+I+ Y+ + D+  A  LF +M
Sbjct: 546 TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 605

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
            + + +TW  ++SGY Q G  + A   F+ M +   +                       
Sbjct: 606 SNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFI----------------------- 642

Query: 320 QMQVEGEKPDRHTFSSIL--SMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYAR 376
                   P+ + F S L     SG     LG+QIH +++KT    DV + N LI+MY  
Sbjct: 643 --------PNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGS 694

Query: 377 C-GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS----FKVLPTY 431
           C  +  +AR +F+ +  ++N +SWN++I   +  G    A +LF SM+     F   P  
Sbjct: 695 CLDSANDARSVFDRIG-IRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNE 753

Query: 432 ITFISVLS-ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            TF S+++ AC+         +   + V + G    +   ++LV    R G  +DA ++ 
Sbjct: 754 YTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIF 813

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV---- 546
           + M      ++ G ++G  +       A+V  E +  +   NS  YV+L + +++     
Sbjct: 814 EQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHE-MKDLVGINSDSYVVLLSAFSEFSVLE 872

Query: 547 -----GRWDDANEVRLLMKSNNIKKPTG 569
                GR   A+ +R  +  N +    G
Sbjct: 873 EGRRKGREVHAHVIRTGLNDNKVAIGNG 900


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 157/368 (42%), Positives = 218/368 (59%), Gaps = 2/368 (0%)

Query: 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN 268
           I  Y   G+V  AR +  +    D   +N MI GY+   ++E A  LF  M   +  +WN
Sbjct: 172 IQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWN 231

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
            MVSG A+ G +E A + F  M +KN +SW++MI G      Y+ A+++F  MQ E  +P
Sbjct: 232 VMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRP 291

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIF 387
            +   SS+L+  + +  L  G  IH  V       D  +  AL+ MYA+CG +  A  +F
Sbjct: 292 RKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVF 351

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
           E+M+  K V +WNAMI G   HG A +A+ELF  M+  K  P  IT + VLSACAH+G+V
Sbjct: 352 EKMEK-KEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMV 410

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
           +EG + F SM   YGIEP +EH+  +VD++GR G L +A +++  MP EP  AVWGALLG
Sbjct: 411 DEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLG 470

Query: 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
           ACR H +VEL +   + L+++EP+NS  Y LL N+YA  GRWDD   VR LMK   +K  
Sbjct: 471 ACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTS 530

Query: 568 TGYSWVDF 575
           TG S +DF
Sbjct: 531 TGISMIDF 538



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 162/349 (46%), Gaps = 34/349 (9%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           E+  AR++  E    DV+ +N MI GY+     G +E A+ LF  M +++  +WN ++SG
Sbjct: 180 EVEGARRMLGEDGNSDVICFNAMIDGYLK---CGEVEAAKELFWSMEDKNVGSWNVMVSG 236

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASL 125
            AK G +EEA  LFN M  +N +SW+AMI G+++ G    A+E F+ M   +       L
Sbjct: 237 MAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVL 296

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
           S++++     G LD+   +     +  +  + ++     L+  Y + GR++ A  +F+K+
Sbjct: 297 SSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGT--ALVDMYAKCGRLDMAWDVFEKM 354

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM-----I 240
                        K+ + +WN+MI      G    A E+F +M ++  F  N +     +
Sbjct: 355 E------------KKEVFTWNAMICGLGMHGRAEDAIELFFKM-QKQKFRPNGITLLGVL 401

Query: 241 SGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKN 294
           S   H   ++E   +F  M       P    +  +V    + G L  A +    MP + +
Sbjct: 402 SACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPS 461

Query: 295 LVSWNSMIAGCETNKDYEGAIKL-FIQMQVEGEKPDRHTFSSILSMSSG 342
              W +++  C  + D E   ++  I +++E +   R+   S +   +G
Sbjct: 462 AAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAG 510



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 139/305 (45%), Gaps = 47/305 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI GY+K  E+  A++LF  M  ++V SWNVM+SG       G +EEAR LF+ M E++ 
Sbjct: 202 MIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAK---CGMIEEARELFNEMKEKNE 258

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM------PARNVVS--------WNAMISGFLQNGD 106
           ++W+ +I GY K G  +EAL +FN M      P + V+S          A+  G   +  
Sbjct: 259 ISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAY 318

Query: 107 VANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166
           V N    FD + G      +ALV    + G LD A  V  K   +       V  +N +I
Sbjct: 319 VNNNSNSFDAVLG------TALVDMYAKCGRLDMAWDVFEKMEKK------EVFTWNAMI 366

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
            G G  GR E+A +LF K+           +F+ N ++   ++   A +G V     IF 
Sbjct: 367 CGLGMHGRAEDAIELFFKMQKQ--------KFRPNGITLLGVLSACAHSGMVDEGLRIFN 418

Query: 227 QMLERDTFSWNTMISGYIHVLD-------MEEASNLFVKMP-HPDTLTWNAMVSGYAQIG 278
            M E   +     +  Y  V+D       + EA  +   MP  P    W A++    + G
Sbjct: 419 SMEE--VYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHG 476

Query: 279 NLELA 283
           ++EL 
Sbjct: 477 DVELG 481



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 158/357 (44%), Gaps = 46/357 (12%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G +E AR +       D + +N +I GY K GE+E A  LF SM  +NV SWN M+SG  
Sbjct: 179 GEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMA 238

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
           + G +  A E F+ M  ++  S SA++ G I+ G   EA  V     +     E   R +
Sbjct: 239 KCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVF----NVMQREEIRPRKF 294

Query: 163 --NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
             ++++      G +++ R +   +  N +  +         V   +++  YAK G +  
Sbjct: 295 VLSSVLAACANLGALDQGRWIHAYVNNNSNSFDA--------VLGTALVDMYAKCGRLDM 346

Query: 221 AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQ 276
           A ++FE+M +++ F+WN MI G       E+A  LF KM      P+ +T   ++S  A 
Sbjct: 347 AWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAH 406

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA-IKLFIQMQVEGE--------- 326
            G ++  L  F  M +         + G E   ++ G  + L  +  + GE         
Sbjct: 407 SGMVDEGLRIFNSMEE---------VYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMP 457

Query: 327 -KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA----LITMYARCG 378
            +P    + ++L       D+ LG    + V K ++   P N+     L  +YAR G
Sbjct: 458 MEPSAAVWGALLGACRKHGDVELG----ERVGKILLELEPQNSGRYALLSNIYARAG 510



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 153/352 (43%), Gaps = 55/352 (15%)

Query: 67  ISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS 126
           I  Y   GE+E A R+       +V+ +NAMI G+L+ G+V  A E F  M  ++  S +
Sbjct: 172 IQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWN 231

Query: 127 ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
            +VSG+ + G ++EA  +  +   + +       +++ +I GY + G  +EA ++F+ + 
Sbjct: 232 VMVSGMAKCGMIEEARELFNEMKEKNE------ISWSAMIDGYIKGGYYKEALEVFNVM- 284

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISG 242
               R E  +R ++ ++S  S++   A  G +   R I   +       D      ++  
Sbjct: 285 ---QREE--IRPRKFVLS--SVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDM 337

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
           Y     ++ A ++F KM   +  TWNAM+ G    G  E A++ F               
Sbjct: 338 YAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELF--------------- 382

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKT- 359
                            +MQ +  +P+  T   +LS    SG+VD   G++I   + +  
Sbjct: 383 ----------------FKMQKQKFRPNGITLLGVLSACAHSGMVD--EGLRIFNSMEEVY 424

Query: 360 -VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            + P +     ++ +  R G + EA  +   M +  +   W A++G C  HG
Sbjct: 425 GIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHG 476


>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 631

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 155/415 (37%), Positives = 241/415 (58%), Gaps = 15/415 (3%)

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           V ++N+++  Y   G    A   F+ +P            +RN+VSWN+++  +A+ GD+
Sbjct: 182 VVSWNSIVGVYMSSGDATGAMGFFEAMP------------ERNVVSWNTVVAGFARMGDM 229

Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
           V+AR +F++M  R+  SWN MISGY    D+E A ++F +M   D ++W AMVS YA+IG
Sbjct: 230 VTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIG 289

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSIL 337
           +L+   + F  MP KNLVSWN+MI G   N  Y+ A++ F  M +EG  +PD  T  S++
Sbjct: 290 DLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVV 349

Query: 338 SMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
           S  + +  +     I   + K+ I   V + NALI M+A+CG +  A  IF +M+  + +
Sbjct: 350 SACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMET-RCI 408

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
           ++W  MI G A +G   +AL ++ +M    V      FI+ L+ACAH GL++EG   F  
Sbjct: 409 ITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNE 468

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVE 516
           MV  Y I+PR+EH+  +VD++GR G L++A+  I+ MP EP   +W  LL +C  H N E
Sbjct: 469 MVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLCSCVAHGNAE 528

Query: 517 LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           L +  ++ + ++EP NS+  VL+ N  A  GRWD   + R  M++  I+K  G S
Sbjct: 529 LIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSS 583



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 212/428 (49%), Gaps = 31/428 (7%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDV 107
           AR +FD M +RD V+WN+++  Y  +G+   A+  F +MP RNVVSWN +++GF + GD+
Sbjct: 170 ARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDM 229

Query: 108 ANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV 167
             A   FDRMP R++ S + ++SG   +G+++ A  V      R D  +  V ++  ++ 
Sbjct: 230 VTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVF----DRMDQKD--VVSWTAMVS 283

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y + G ++   +LFD +PV            +N+VSWN+MI  Y        A   F+ 
Sbjct: 284 AYAKIGDLDTVNELFDHMPV------------KNLVSWNAMITGYNHNSRYDEALRTFQL 331

Query: 228 MLERDTF-----SWNTMISGYIHVLDMEEAS--NLFVKMP--HPDTLTWNAMVSGYAQIG 278
           M+    F     +  +++S    +  +E  +  + F+     H      NA++  +A+ G
Sbjct: 332 MMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCG 391

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
           ++  A   F +M  + +++W +MI+G   N     A+ ++  M  EG + D   F + L+
Sbjct: 392 DVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALA 451

Query: 339 MSSGIVDLHLGMQI-HQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
             +    L  G  I ++MV +  + P +     ++ +  R G + EA +  E M L  +V
Sbjct: 452 ACAHGGLLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSV 511

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
           V W  ++  C +HG A E +E + S +  ++ P   ++  ++S C+      +G    ++
Sbjct: 512 VIWVTLLCSCVAHGNA-ELIE-YVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDART 569

Query: 457 MVNEYGIE 464
            +  +GIE
Sbjct: 570 SMRNWGIE 577



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 192/414 (46%), Gaps = 87/414 (21%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           AR++FDEM  RDVVSWN ++  Y+SS   G    A   F+ MPER+ V+WNTV++G+A+ 
Sbjct: 170 ARQVFDEMVDRDVVSWNSIVGVYMSS---GDATGAMGFFEAMPERNVVSWNTVVAGFARM 226

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI 133
           G+M  A  +F+ MP+RN VSWN MISG+  +GDV  A   FDRM  +D  S +A+VS   
Sbjct: 227 GDMVTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYA 286

Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI-------- 185
           + G+LD    +      +     +LV ++N +I GY    R +EA + F  +        
Sbjct: 287 KIGDLDTVNELFDHMPVK-----NLV-SWNAMITGYNHNSRYDEALRTFQLMMLEGRFRP 340

Query: 186 -------PVNCDRGEGNVRFKRNIVSW-------------NSMIMCYAKAGDVVSAREIF 225
                   V+     G+V +   I S+             N++I  +AK GDV  A  IF
Sbjct: 341 DEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIF 400

Query: 226 EQMLERDTFSWNTMISGY-----------------------------------IHVLDME 250
            +M  R   +W TMISG+                                    H   ++
Sbjct: 401 YKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQ 460

Query: 251 EASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAG 304
           E  ++F +M       P    +  MV    + GNL+ A+ F + MP + ++V W +++  
Sbjct: 461 EGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLCS 520

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS-------GIVDLHLGMQ 351
           C  + + E  +  ++  ++   +P   ++  ++S  S       G++D    M+
Sbjct: 521 CVAHGNAE--LIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMR 572


>gi|414869047|tpg|DAA47604.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 694

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 195/624 (31%), Positives = 311/624 (49%), Gaps = 81/624 (12%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER------------ 58
           +A AR++FDE+P  D  SWN +++ ++++   G   +A  L   M  R            
Sbjct: 41  LAAARRVFDEIPHPDAASWNSLLAAHVAA---GAHRDAWRLLRAMHARGLAASTFALGSA 97

Query: 59  ---------------------------DCVTWNTVISGYAKTGEMEEALRLFNSMPARNV 91
                                      +    + ++  YAK G + +A R+F+ MP RN+
Sbjct: 98  LRSAAAARRPELGAQLQSFSVRCGLADNVFPASALLDVYAKCGRLGDARRVFDGMPVRNI 157

Query: 92  VSWNAMISGFLQNGDVANAIEFFDRMP-------GRDSASLSALVSGLIQNGELDEAARV 144
           VSWNA+I+G+  +   A A+E F  M        G   A L A ++G      + +    
Sbjct: 158 VSWNAIIAGYTDSRKPAEAMELFLEMQRVGSVPDGTTFAVLLATIAGPRWYSLMRQLHGK 217

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
           +VK GS        + A N  I  Y Q   + ++RK+FD I              R+++S
Sbjct: 218 IVKYGSALG-----LVALNAAITAYSQCDALADSRKIFDGIE------------SRDLIS 260

Query: 205 WNSMIMCYAKAGDVVSAREIFEQML-----ERDTFSWNTMIS-GYIHVLDMEEA---SNL 255
           WNSM+  YA  G    A   F +M+     + D +S+ + IS    H  D ++     +L
Sbjct: 261 WNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEHGCDDQQGRSIHSL 320

Query: 256 FVKMPHPD-TLTWNAMVSGYAQIGN---LELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
            +K      T   NAM++ Y +  +   +E A + F  +  K+ VSWNSM+ G   +   
Sbjct: 321 VIKFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFKDAVSWNSMLTGYSHHGLS 380

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNAL 370
             A+K F  M+ E  + D    S+ L   S +  L LG Q+H +V ++    +  ++++L
Sbjct: 381 SDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLGRQVHSLVVQSGFASNDFVSSSL 440

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           I MY++CG + +AR  FEE     + V WN+M+ G A HG A    +LF  M   +V   
Sbjct: 441 IFMYSKCGVLGDARKSFEEADK-SSSVPWNSMMFGYAQHGQAQTVTDLFNEMLDLEVPLD 499

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
           ++TF+++++A +H GLV+EG +   +M   Y I  R+EH+A  VD+ GR G+L+ A +LI
Sbjct: 500 HVTFVALITAYSHGGLVDEGSEILNTMETRYKIPMRMEHYACGVDLYGRAGQLDKAKELI 559

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           + MPF+PD  VW  LLGACR+H N+ELA   A  L   EP   + YVLL +MY+ +G W 
Sbjct: 560 ESMPFQPDAIVWMTLLGACRIHGNMELASDVARHLFVAEPRQHSTYVLLSSMYSGLGMWS 619

Query: 551 DANEVRLLMKSNNIKKPTGYSWVD 574
           D   V+ +M++  + K  G+SW++
Sbjct: 620 DRATVQKVMRNRALSKIPGWSWIE 643



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 130/527 (24%), Positives = 231/527 (43%), Gaps = 74/527 (14%)

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
           A +   WN +++ +   G +A A   FD +P  D+AS ++L++  +  G   +A R+L  
Sbjct: 23  ASSPTPWNQLLTAYSATG-LAAARRVFDEIPHPDAASWNSLLAAHVAAGAHRDAWRLLRA 81

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVE----EARKLFDKIPVNCDRGEGNVRFKRNIV 203
             +R         A +T  +G   R        E         V C   +       N+ 
Sbjct: 82  MHARG-------LAASTFALGSALRSAAAARRPELGAQLQSFSVRCGLAD-------NVF 127

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-- 261
             ++++  YAK G +  AR +F+ M  R+  SWN +I+GY       EA  LF++M    
Sbjct: 128 PASALLDVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVG 187

Query: 262 --PDTLTW-----------------------------------NAMVSGYAQIGNLELAL 284
             PD  T+                                   NA ++ Y+Q   L  + 
Sbjct: 188 SVPDGTTFAVLLATIAGPRWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADSR 247

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE-GEKPDRHTFSSILSMSSGI 343
             F  +  ++L+SWNSM+     +   + A++ F++M  E G +PD ++F+S +S+ S  
Sbjct: 248 KIFDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEH 307

Query: 344 -VDLHLGMQIHQMVTKTVIPDV-PINNALITMYARCG---AIVEARIIFEEMKLLKNVVS 398
             D   G  IH +V K  +  V P+ NA+I MY R      + +A   F  + + K+ VS
Sbjct: 308 GCDDQQGRSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSL-VFKDAVS 366

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN+M+ G + HG +++AL+ F+ MR+  +        + L +C+   ++  GRQ   S+V
Sbjct: 367 WNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLGRQ-VHSLV 425

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV---WGALLGACRVHNNV 515
            + G        +SL+ +  + G L DA    +    E DK+    W +++     H   
Sbjct: 426 VQSGFASNDFVSSSLIFMYSKCGVLGDARKSFE----EADKSSSVPWNSMMFGYAQHGQA 481

Query: 516 ELAQVAAEALMKVE-PENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
           +        ++ +E P +   +V L   Y+  G  D+ +E+   M++
Sbjct: 482 QTVTDLFNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEILNTMET 528



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 116/471 (24%), Positives = 201/471 (42%), Gaps = 89/471 (18%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-----FLEEAR---------- 49
           Y K   +  AR++FD MP R++VSWN +I+GY  SR        FLE  R          
Sbjct: 136 YAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGSVPDGTTF 195

Query: 50  --YLFDIMPER-------------------DCVTWNTVISGYAKTGEMEEALRLFNSMPA 88
              L  I   R                     V  N  I+ Y++   + ++ ++F+ + +
Sbjct: 196 AVLLATIAGPRWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADSRKIFDGIES 255

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC 148
           R+++SWN+M+  +  +G    A+ FF RM  R+S          IQ       + + V  
Sbjct: 256 RDLISWNSMLGAYAYHGLDDEAMRFFVRMM-RESG---------IQPDMYSFTSAISVCS 305

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR---KLFDKIPVNCDRGEGNVRFK----RN 201
              CD  +   R+ ++L++ +G  G          ++ +   NC   +    F     ++
Sbjct: 306 EHGCDDQQG--RSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFKD 363

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG-----------YIHV 246
            VSWNSM+  Y+  G    A + F  M    +  D F  +  +              +H 
Sbjct: 364 AVSWNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLGRQVHS 423

Query: 247 LDMEE--ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           L ++   ASN FV          ++++  Y++ G L  A   F+   + + V WNSM+ G
Sbjct: 424 LVVQSGFASNDFVS---------SSLIFMYSKCGVLGDARKSFEEADKSSSVPWNSMMFG 474

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRH-TFSSILSMSS--GIVDLHLGMQI-HQMVTKTV 360
              +   +    LF +M ++ E P  H TF ++++  S  G+VD   G +I + M T+  
Sbjct: 475 YAQHGQAQTVTDLFNEM-LDLEVPLDHVTFVALITAYSHGGLVD--EGSEILNTMETRYK 531

Query: 361 IPDVPINNAL-ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           IP    + A  + +Y R G + +A+ + E M    + + W  ++G C  HG
Sbjct: 532 IPMRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAIVWMTLLGACRIHG 582


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 167/526 (31%), Positives = 280/526 (53%), Gaps = 69/526 (13%)

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN 135
           M  A  L   +P+   +  N +I  +   G   +A   FD +P +D+   + ++ GL++ 
Sbjct: 125 MLHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRW 184

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF----------DKI 185
           G LDEA R+LV+   R       V ++ +LI GY + GR  +A   F          D++
Sbjct: 185 GLLDEARRLLVQAPERN------VVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEV 238

Query: 186 PV-----NCDR--------------GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
            V      C +              G+  +R   N+V   ++I  YAK GD+  A+ +F+
Sbjct: 239 AVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVV--ALIDMYAKCGDIAQAQAVFD 296

Query: 227 QMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
            +                             + P P    WNA++ GY ++G++++A   
Sbjct: 297 AVGRG--------------------------QKPEP----WNAIIDGYCKLGHVDVARSL 326

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F +M  ++++++NSMI G   +     A++LF+QM+  G + D  T  S+L+  + +  L
Sbjct: 327 FDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGAL 386

Query: 347 HLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             G  +H  + + ++  DV +  AL+ MY +CG + EA  +F  M   ++V +W AMI G
Sbjct: 387 PHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGE-RDVHTWTAMIAG 445

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
            A +G   +ALE F  M+     PT +T+I+VL+AC+H+ L++EGR HF  M + + + P
Sbjct: 446 LAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHP 505

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
           ++EH+  ++D++ R G L++AM L++ MP +P+  +WG++L ACRVH N++LA+ AAE L
Sbjct: 506 QVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHL 565

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           +K+ PE    YV LYN+Y D  +W DA  VR+LM+   +KK  GYS
Sbjct: 566 LKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYS 611



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 201/444 (45%), Gaps = 61/444 (13%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGY 70
           M  A  L   +P    +  N +I  Y S    G  ++AR  FD +P +D V W TVI G 
Sbjct: 125 MLHAACLRTMLPSAAPLVANPLIHMYASM---GLTDDARRAFDEIPAKDAVVWATVIGGL 181

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
            + G ++EA RL    P RNVVSW ++I+G+ + G  A+A+  F+ M     A     V 
Sbjct: 182 VRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVI 241

Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG----YGQRGRVEEARKLFDKIP 186
           G +      +   + +        G+  +R  + L+V     Y + G + +A+ +FD + 
Sbjct: 242 GAL--SACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAV- 298

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246
                G G     +    WN++I  Y K G V  AR +F+QM  RD  ++N+MI+GYIH 
Sbjct: 299 -----GRG-----QKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHS 348

Query: 247 LDMEEASNLFVKM-------------------------PH--------------PDTLTW 267
             + +A  LF++M                         PH               D    
Sbjct: 349 GRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLG 408

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
            A++  Y + G ++ A   F RM ++++ +W +MIAG   N   + A++ F QM+ +G +
Sbjct: 409 TALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQ 468

Query: 328 PDRHTFSSILSMSSGIVDLHLG-MQIHQMVT-KTVIPDVPINNALITMYARCGAIVEARI 385
           P   T+ ++L+  S    L  G +  ++M +   + P V     +I + AR G + EA  
Sbjct: 469 PTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMH 528

Query: 386 IFEEMKLLKNVVSWNAMIGGCASH 409
           + + M +  N V W +++  C  H
Sbjct: 529 LVQTMPMQPNAVIWGSILSACRVH 552



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 165/398 (41%), Gaps = 100/398 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           +I G V+   + +AR+L  + P+R+VVSW  +I+GY  SR +G   +A Y F+ M     
Sbjct: 177 VIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGY--SR-AGRPADAVYCFNCMLSDGV 233

Query: 56  -------------------------------PERDCVTWNTV---ISGYAKTGEMEEALR 81
                                           +R  +T N V   I  YAK G++ +A  
Sbjct: 234 APDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQA 293

Query: 82  LFNSM-PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
           +F+++   +    WNA+I G+ + G V  A   FD+M  RD  + +++++G I +G L +
Sbjct: 294 VFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRD 353

Query: 141 AARVLVKC---GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           A ++ ++    G R D    +     +L+      G +   R L   I       E  + 
Sbjct: 354 ALQLFMQMRRHGMRADNFTVV-----SLLTACASLGALPHGRALHASI-------EQRI- 400

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG--------------- 242
            + ++    +++  Y K G V  A  +F +M ERD  +W  MI+G               
Sbjct: 401 VEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFC 460

Query: 243 -------------YIHVLDMEEASNLF------------VKMPHPDTLTWNAMVSGYAQI 277
                        YI VL     S+L             +   HP    +  M+   A+ 
Sbjct: 461 QMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARS 520

Query: 278 GNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
           G L+ A+   + MP Q N V W S+++ C  +K+ + A
Sbjct: 521 GLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLA 558



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 35/199 (17%)

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGC-ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
           +L   L  F R+P      +++ +  C + +   +  + L  +M+  G +    TF  + 
Sbjct: 50  HLRYVLSLFDRLPHSTTFLFDTALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVF 109

Query: 338 SMSSGIVDLH--LGMQIHQMVTKTVIPDVP--INNALITMYARCGAIVEARIIFEEM--- 390
              +        L + +H    +T++P     + N LI MYA  G   +AR  F+E+   
Sbjct: 110 RCCAAGARARAGLCLMLHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAK 169

Query: 391 ----------------------KLL-----KNVVSWNAMIGGCASHGFATEALELFKSMR 423
                                 +LL     +NVVSW ++I G +  G   +A+  F  M 
Sbjct: 170 DAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCML 229

Query: 424 SFKVLPTYITFISVLSACA 442
           S  V P  +  I  LSAC+
Sbjct: 230 SDGVAPDEVAVIGALSACS 248


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 181/583 (31%), Positives = 294/583 (50%), Gaps = 29/583 (4%)

Query: 7   KRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE----RDCVT 62
           KR+++ +     D + +R        +    S    G L E R +  ++       D   
Sbjct: 12  KRQQLGQIAAAIDALQKRKDADLKECVRVIQSCARLGALAEGRRIHQLIRRVGLGSDVYV 71

Query: 63  WNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-- 120
            N ++  Y K G +EEA  +F + PA+NV SW  +I+   Q+G    A+  F  M  +  
Sbjct: 72  SNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALFYEMLKQGI 131

Query: 121 --DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
              S S +A ++      E   A R L     R  G +D V A  +L+  Y + G +EE+
Sbjct: 132 QPHSVSFTAAINACSAGPEFLPAGRALHALLRRY-GFQDAVVATTSLVSMYSKCGSLEES 190

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTF 234
            K F+ +             + N VSWN+MI  +A+    + A    ++M    +   + 
Sbjct: 191 VKTFESMT------------ELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSV 238

Query: 235 SWNTMISGYIHVLDMEEASNLF--VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           ++ T++S Y     ++ A  +   +     D    N +++ Y + G L+ A   FK M Q
Sbjct: 239 TYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVVNVILNMYGKCGCLQDAEAMFKSMSQ 298

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
            ++++WN+MIA    +     A++ +  MQ EG  PD +T+ S++   + + D+ +G Q+
Sbjct: 299 PDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQV 358

Query: 353 HQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
           H+ +         + N+L+ MY +CG +  AR IF+  K  K  V+WNAMIG  A H   
Sbjct: 359 HRRLGDRAFQVTELANSLVNMYGKCGILDVARSIFD--KTAKGSVTWNAMIGAYAQHSHE 416

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
            +A ELF  MR     P+YITF+SVLSACA+AGL EE   +F  M  ++G+ P   H+  
Sbjct: 417 QQAFELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRPGGGHYGC 476

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           +V+ +G+ GRL DA  LI+GMPFEPD   W + L  CR H +++  + AA+  ++++PE 
Sbjct: 477 MVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKRGKFAAKGAIRIDPEA 536

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           ST YV L  ++AD G + +A+ +R LM    I+K  G S +  
Sbjct: 537 STGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKL 579



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 158/360 (43%), Gaps = 68/360 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSR---------GSGFLE----- 46
           ++S Y K   + ++ K F+ M + + VSWN MI+ +   R            FLE     
Sbjct: 177 LVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRAC 236

Query: 47  ------------------EARYLFDIMP----ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                              ARY+ D +     ++D V  N +++ Y K G +++A  +F 
Sbjct: 237 SVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVV--NVILNMYGKCGCLQDAEAMFK 294

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
           SM   +V++WN MI+ + Q+G  + A+ F++ M       D  +  +++      G+++ 
Sbjct: 295 SMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEV 354

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +V  + G R     +L    N+L+  YG+ G ++ AR +FDK               +
Sbjct: 355 GKQVHRRLGDRAFQVTELA---NSLVNMYGKCGILDVARSIFDKTA-------------K 398

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLF 256
             V+WN+MI  YA+      A E+F  M     E    ++ +++S   +    EEA + F
Sbjct: 399 GSVTWNAMIGAYAQHSHEQQAFELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYF 458

Query: 257 VKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKD 310
           V M       P    +  MV    + G L  A    + MP + ++++W S +A C ++ D
Sbjct: 459 VCMQQDHGVRPGGGHYGCMVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHGD 518


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 186/593 (31%), Positives = 307/593 (51%), Gaps = 59/593 (9%)

Query: 8   RREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVI 67
           R E +    L  E   R++ +   MI G+I    +GF E            D      ++
Sbjct: 61  RIESSYYFPLLQECIDRNLATEARMIHGHIVK--TGFHE------------DLFVMTFLV 106

Query: 68  SGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRD 121
           + Y+K G ME A ++F+++P RNV +W  +++G++QN     A++ F +M      P   
Sbjct: 107 NVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNY 166

Query: 122 SASLSALVSGLIQNGELDEAARV-LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           +  +       +Q+ E  +     L+K     D         N+L   Y +  R+E A K
Sbjct: 167 TLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFD-----TSIGNSLSSFYSKFRRLEFAIK 221

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSW 236
            F  I             +++++SW S+I      G    +   F  ML    + + ++ 
Sbjct: 222 AFKIIK------------EKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTL 269

Query: 237 NTMISGYIHVLDME---EASNLFVKMPHPDT-LTWNAMVSGYAQIGNLELALDFFKRMPQ 292
            +++S    +L ++   +  +L +K+ +  + L  N+++  Y + G L  A   F+ M  
Sbjct: 270 TSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMET 329

Query: 293 KNLVSWNSMIAG-----------CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            NLV+WN+MIAG              +K    A+ +F ++   G KPD  TFSS+LS+ S
Sbjct: 330 LNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCS 389

Query: 342 GIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +V L  G QIH Q++   V+ DV +  AL++MY +CG+I +A   F EM   + ++SW 
Sbjct: 390 NLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPS-RTMISWT 448

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           +MI G A HG + +AL+LF+ MR   + P  +TF+ VLSAC+HAGL +E   +F+ M  +
Sbjct: 449 SMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQ 508

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           Y I+P ++HFA L+D+  R GR+E+A D++  M FEP++ +W  L+  CR H   +L   
Sbjct: 509 YNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFY 568

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           AAE L+K++P++   YV L NM+   GRW D ++VR LMK   + K   +SW+
Sbjct: 569 AAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWI 621



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 100/232 (43%), Gaps = 52/232 (22%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS------------SRGSGFLEEARYLF 52
           Y+K   + +A+KLF+ M   ++V+WN MI+G+                GS  L   + L+
Sbjct: 311 YLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLY 370

Query: 53  DIMPERDCVTWNTV-----------------------------------ISGYAKTGEME 77
               + D  T+++V                                   +S Y K G ++
Sbjct: 371 RSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSID 430

Query: 78  EALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD--RMPG--RDSASLSALVSGLI 133
           +A + F  MP+R ++SW +MI+GF ++G    A++ F+  R+ G   +  +   ++S   
Sbjct: 431 KASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACS 490

Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
             G  DEA     +   +    + ++  +  LI  Y + GRVEEA  +  K+
Sbjct: 491 HAGLADEALYYF-ELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKM 541



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 25/197 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY----ISSRGSGFLEEARYLFDIMP 56
           ++S Y K   + KA K F EMP R ++SW  MI+G+    +S +     E+ R L  I P
Sbjct: 419 LVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMR-LVGIKP 477

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
            +  VT+  V+S  +  G  +EAL  F  M  +  +      +  +I  +L+ G V  A 
Sbjct: 478 NQ--VTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAF 535

Query: 112 EFFDRMPGRDSASL-SALVSGLIQNGELD---EAARVLVKCGSRCDGGEDLVRAYNTLIV 167
           +   +M    + ++ S L++G   +G+ D    AA  L+K   +       V  Y +L+ 
Sbjct: 536 DVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKD------VETYVSLLN 589

Query: 168 GYGQRGR---VEEARKL 181
            +   GR   V + RKL
Sbjct: 590 MHISAGRWKDVSKVRKL 606


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 183/518 (35%), Positives = 283/518 (54%), Gaps = 38/518 (7%)

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSG 131
           M+ A+ +F  +   +  ++N MI GF        AI  F  M       D  +   ++  
Sbjct: 74  MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKV 133

Query: 132 LIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
             +   L E  ++   ++KCG    G    V+  NTLI  Y   G VE AR++FD++   
Sbjct: 134 CSRLQALSEGEQIHALIMKCGF---GSHGFVK--NTLIHMYANCGEVEVARRVFDEMS-- 186

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT-FSWNTMIS-----G 242
                     +RN+ +WNSM   Y K+G+     ++F +MLE D  F   T++S     G
Sbjct: 187 ----------ERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACG 236

Query: 243 YIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
            +  L++ E  N +V+      +P  +T  ++V  YA+ G ++ A   F +M ++++V+W
Sbjct: 237 RLADLELGEWINRYVEEKGLKGNPTLIT--SLVDMYAKCGQVDTARRLFDQMDRRDVVAW 294

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           ++MI+G         A+ LF +MQ     P+  T  SILS  + +  L  G  +H  + K
Sbjct: 295 SAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKK 354

Query: 359 TVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
             +   V +  AL+  YA+CG++  +  +F +M + KNV+SW  +I G AS+G   +ALE
Sbjct: 355 KRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPV-KNVLSWTVLIQGLASNGQGKKALE 413

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
            F  M    V P  +TFI VLSAC+HAGLV+EGR  F SM  ++GIEPRIEH+  +VDI+
Sbjct: 414 YFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDIL 473

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
           GR G +E+A   IK MP +P+  +W  LL +C+VH NVE+ + + + L+ +EP +S  Y+
Sbjct: 474 GRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYI 533

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           LL N+YA VGRW+DA +VR  MK   IKK  G S ++ 
Sbjct: 534 LLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIEL 571



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 184/364 (50%), Gaps = 36/364 (9%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR--- 120
           NT+I  YA  GE+E A R+F+ M  RNV +WN+M +G+ ++G+    ++ F  M      
Sbjct: 163 NTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIR 222

Query: 121 -DSASLSALVS--GLIQNGELDE-AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            D  +L ++++  G + + EL E   R + + G +  G   L+    +L+  Y + G+V+
Sbjct: 223 FDEVTLVSVLTACGRLADLELGEWINRYVEEKGLK--GNPTLI---TSLVDMYAKCGQVD 277

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            AR+LFD++    DR        R++V+W++MI  Y++A     A ++F +M ++     
Sbjct: 278 TARRLFDQM----DR--------RDVVAWSAMISGYSQASRCREALDLFHEM-QKANIDP 324

Query: 237 N--TMIS-----GYIHVLDMEEASNLFVKMPHPD-TLTW-NAMVSGYAQIGNLELALDFF 287
           N  TM+S       +  L+  +  + F+K      T+T   A++  YA+ G++E +++ F
Sbjct: 325 NEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVF 384

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVD 345
            +MP KN++SW  +I G  +N   + A++ F  M  +  +P+  TF  +LS  S  G+VD
Sbjct: 385 GKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVD 444

Query: 346 LHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
               + +       + P +     ++ +  R G I EA    + M +  N V W  ++  
Sbjct: 445 EGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLAS 504

Query: 406 CASH 409
           C  H
Sbjct: 505 CKVH 508



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 160/371 (43%), Gaps = 82/371 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y    E+  AR++FDEM +R+V +WN M +GY     SG  EE   LF  M E D 
Sbjct: 165 LIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTK---SGNWEEVVKLFHEMLELDI 221

Query: 61  ----VTWNTVISG-----------------------------------YAKTGEMEEALR 81
               VT  +V++                                    YAK G+++ A R
Sbjct: 222 RFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARR 281

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           LF+ M  R+VV+W+AMISG+ Q      A++ F  M       +  ++ +++S     G 
Sbjct: 282 LFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGA 341

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVG------YGQRGRVEEARKLFDKIPVNCDR 191
           L+    V      +        R   T+ +G      Y + G VE + ++F K+PV    
Sbjct: 342 LETGKWVHFFIKKK--------RMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPV---- 389

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVL 247
                   +N++SW  +I   A  G    A E F  MLE++      ++  ++S   H  
Sbjct: 390 --------KNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAG 441

Query: 248 DMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSM 301
            ++E  +LFV M       P    +  MV    + G +E A  F K MP Q N V W ++
Sbjct: 442 LVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTL 501

Query: 302 IAGCETNKDYE 312
           +A C+ +K+ E
Sbjct: 502 LASCKVHKNVE 512



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 143/309 (46%), Gaps = 14/309 (4%)

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
           +++ A+  F+++ + +  ++N MI G    +    AI LF +M     +PD  TF  IL 
Sbjct: 73  SMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILK 132

Query: 339 MSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVV 397
           + S +  L  G QIH ++ K        + N LI MYA CG +  AR +F+EM   +NV 
Sbjct: 133 VCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMS-ERNVR 191

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           +WN+M  G    G   E ++LF  M    +    +T +SVL+AC     +E G +     
Sbjct: 192 TWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELG-EWINRY 250

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG----ACRVHN 513
           V E G++       SLVD+  + G+++ A  L   M    D   W A++     A R   
Sbjct: 251 VEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMD-RRDVVAWSAMISGYSQASRCRE 309

Query: 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPT--GYS 571
            ++L     +A   ++P N    V + +  A +G  +    V   +K   +K     G +
Sbjct: 310 ALDLFHEMQKA--NIDP-NEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTA 366

Query: 572 WVDF-SPCG 579
            +DF + CG
Sbjct: 367 LMDFYAKCG 375



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 118/269 (43%), Gaps = 52/269 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           ++  Y K  ++  AR+LFD+M +RDVV+W+ MISGY                        
Sbjct: 266 LVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPN 325

Query: 37  ----ISSRGS----GFLEEARYLFDIMPERD---CVTWNT-VISGYAKTGEMEEALRLFN 84
               +S   S    G LE  +++   + ++     VT  T ++  YAK G +E ++ +F 
Sbjct: 326 EITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFG 385

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
            MP +NV+SW  +I G   NG    A+E+F  M  +    +  +   ++S     G +DE
Sbjct: 386 KMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDE 445

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
              + V   SR  G E  +  Y  ++   G+ G +EEA +    +P+           + 
Sbjct: 446 GRDLFVSM-SRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPI-----------QP 493

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQML 229
           N V W +++       +V    E  +Q++
Sbjct: 494 NAVIWRTLLASCKVHKNVEIGEESLKQLI 522


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 174/588 (29%), Positives = 311/588 (52%), Gaps = 57/588 (9%)

Query: 1   MISGYVKRREMAKARKLFD-EMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD----IM 55
           +I+ Y   R+   +  +F    P  +V  WN +I     +   G   EA  L+     I 
Sbjct: 54  LIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHN---GLFSEALSLYSETQRIR 110

Query: 56  PERDCVTWNTVISGYAKTGEMEEAL----RLFNSMPARNVVSWNAMISGFLQNGDVANAI 111
            + D  T+ +VI+  A   + E A     R+ +     ++   NA+I  + +  D+  A 
Sbjct: 111 LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKAR 170

Query: 112 EFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
           + F+ MP RD  S ++L+SG   NG  +EA  +                           
Sbjct: 171 KVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYY------------------------- 205

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML-- 229
                ++ KLF ++ VN        +FK ++++  S++      GD+   + + + M+  
Sbjct: 206 -----QSIKLFMEM-VN--------QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITS 251

Query: 230 --ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
             E DT + N +I+ Y    ++  +  +F  M   D+++WN+M++ Y Q G +  +L  F
Sbjct: 252 GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVF 311

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
           + M  +++++WN++IA C  ++D    +++  +M+ EG  PD  T  SIL + S +    
Sbjct: 312 ENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKR 371

Query: 348 LGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
            G +IH  + K  +  DVP+ N LI MY++CG++  +  +F+ MK  K+VV+W A+I  C
Sbjct: 372 QGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKT-KDVVTWTALISAC 430

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
             +G   +A+  F  M +  ++P ++ F++++ AC+H+GLVEEG  +F  M  +Y IEPR
Sbjct: 431 GMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPR 490

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM 526
           IEH+A +VD++ R   L+ A D I  MP +PD ++WGALL ACR+  + E+A+  +E ++
Sbjct: 491 IEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERII 550

Query: 527 KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           ++ P+++  YVL+ N+YA +G+WD    +R  +K+  +KK  G SW++
Sbjct: 551 ELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWME 598



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 115/289 (39%), Gaps = 51/289 (17%)

Query: 321 MQVEGEKPDRHTFSSI---LSMSSGIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYAR 376
           ++V  E   +  FSSI   L+ ++    LH   ++H ++ T  +   V  +  LI  YA 
Sbjct: 4   LRVLHECSRQTLFSSISRALASAATTTQLH---KLHSLIITLGLHHSVIFSAKLIAKYAH 60

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
                 +  +F       NV  WN++I     +G  +EAL L+   +  ++ P   TF S
Sbjct: 61  FRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPS 120

Query: 437 VLSACAHAGLVE-EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP- 494
           V++AC  AGL++ E  +     V + G    +    +L+D+  R   L+ A  + + MP 
Sbjct: 121 VINAC--AGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPL 178

Query: 495 ---------------------------------------FEPDKAVWGALLGACRVHNNV 515
                                                  F+PD     ++L AC    ++
Sbjct: 179 RDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDL 238

Query: 516 ELAQVAAEALMKVEPE-NSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
           E  +   + ++    E ++T   +L NMYA  G    + EV   MK  +
Sbjct: 239 EFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKD 287


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 178/544 (32%), Positives = 278/544 (51%), Gaps = 66/544 (12%)

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS--------LSALVSGL 132
           ++ N+    N  SWN  I G++++ +  NA+  +  M  + SA         L  + +G 
Sbjct: 109 KILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGF 168

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
             +   +E    +++ G   D     +  +N +I      G +  ARKLFD+  V     
Sbjct: 169 SLSWTANEILGHVIQLGFDSD-----LFVHNAIIHVLVSCGELLAARKLFDESCV----- 218

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS----------------- 235
                  R++VSWNS+I  Y + G    A +++ +M E +                    
Sbjct: 219 -------RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLEN 271

Query: 236 ----------------------WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
                                  N ++  YI   ++E A  LF  M     ++W  MV G
Sbjct: 272 LALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIG 331

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           YA+ G LE A+  F  MP+K++V WN++I G    K  + A+ LF +MQ     PD+ T 
Sbjct: 332 YAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITV 391

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
            + LS  S +  L +G+ +H  V K  +  +V +  AL+ MYA+CG I +A  +FEEM  
Sbjct: 392 VNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPG 451

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
            +N ++W A+I G A HG    A+  F  M S  ++P  ITFI VLSAC H GLV++GR 
Sbjct: 452 -RNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRD 510

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           +F  M ++YGI P+++H++ LVD++GR G LE+A +LI+ MPFEPD  VWGAL    R+H
Sbjct: 511 YFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIH 570

Query: 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
            NV + + AA  L++++P +   YVLL NMY D   W+ A +VR +M+   ++K  G S 
Sbjct: 571 GNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSS 630

Query: 573 VDFS 576
           ++ +
Sbjct: 631 IEMN 634



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 141/333 (42%), Gaps = 60/333 (18%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DIMPERDCVTW 63
           E+  ARKLFDE   RD+VSWN +I+GY+     G  +EA  L+      ++MP  D VT 
Sbjct: 205 ELLAARKLFDESCVRDLVSWNSIINGYVR---CGLADEAFDLYYKMGELNVMP--DEVTM 259

Query: 64  NTVISG-----------------------------------YAKTGEMEEALRLFNSMPA 88
             V+S                                    Y K   +E A  LF +M  
Sbjct: 260 IGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTK 319

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC 148
           + VVSW  M+ G+ + G + +A+  F+ MP +D    +AL+ G +Q     EA  +  + 
Sbjct: 320 KTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEM 379

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
            +      D +   N L     Q G ++    +   +  +            N+    ++
Sbjct: 380 QAS-SVAPDKITVVNCL-SACSQLGALDVGIWMHHYVDKH--------NLTMNVALGTAL 429

Query: 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDT 264
           +  YAK G++  A ++FE+M  R++ +W  +I G         A + F +M      PD 
Sbjct: 430 VDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDE 489

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           +T+  ++S     G ++   D+F +M  K  +S
Sbjct: 490 ITFIGVLSACCHGGLVDQGRDYFYQMTSKYGIS 522



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 121/301 (40%), Gaps = 87/301 (28%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y+K + +  A+ LF+ M ++ VVSW  M+ GY      G LE A  LF+ MPE+D V WN
Sbjct: 301 YIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAK---FGLLESAVRLFNEMPEKDVVLWN 357

Query: 65  TVISGYAKTGEMEEALRLFNSMPAR----------------------------------- 89
            +I G+ +    +EAL LF+ M A                                    
Sbjct: 358 ALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKH 417

Query: 90  ----NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR-- 143
               NV    A++  + + G++  AI+ F+ MPGR+S + +A++ GL  +G+   A    
Sbjct: 418 NLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYF 477

Query: 144 -----------------VLVKC--GSRCDGGEDL-------------VRAYNTLIVGYGQ 171
                            VL  C  G   D G D              ++ Y+ L+   G+
Sbjct: 478 SEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGR 537

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G +EEA +L   +P           F+ + V W ++       G+V        ++LE 
Sbjct: 538 AGFLEEAEELIRSMP-----------FEPDAVVWGALFFGSRIHGNVHMGERAASKLLEL 586

Query: 232 D 232
           D
Sbjct: 587 D 587


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 185/609 (30%), Positives = 302/609 (49%), Gaps = 87/609 (14%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSM------PAR------- 89
           G  + AR +FD M +R+ V W T+I  Y + GE + A  ++N M      P+        
Sbjct: 97  GHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLL 156

Query: 90  -----------------------NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS 126
                                  +V   N+M++ + + G V +A   F+ M  RD  S +
Sbjct: 157 SGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWN 216

Query: 127 ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
           +LVSG  Q G + E  ++L++   + DG E   + + +L+     + ++   + +   I 
Sbjct: 217 SLVSGYAQLGNIREVLQLLIR--MKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHIL 274

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246
                 + ++          S+I  Y K G+V SA  IFE M+ +D  SW  MISG +  
Sbjct: 275 RAGLEQDSHIE--------TSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQN 326

Query: 247 LDMEEASNLFVKMPH----PDTLT-----------------------------------W 267
              + A  +F +M      P T T                                    
Sbjct: 327 DCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQ 386

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           N++V+ YA+ G+LE +   F RM ++++VSWN++++G   N     A+ LF +M+   ++
Sbjct: 387 NSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQR 446

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARII 386
           PD  T  S+L   + I  LH G  IH  VTK+ + P + I+ AL+ MY++CG +  A+  
Sbjct: 447 PDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKC 506

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+ M   +++VSW+++I G  SHG    AL ++       + P ++ ++S+LSAC+H GL
Sbjct: 507 FDRMPQ-QDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGL 565

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           V++G   F SM  ++GIEPR+EH A +VD++ R GR+E+A    K M  +P   V G LL
Sbjct: 566 VDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILL 625

Query: 507 GACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
            ACR   NVEL  + A  ++ ++P N+  YV L + YA + RWD   EV   MKS ++KK
Sbjct: 626 DACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKK 685

Query: 567 PTGYSWVDF 575
             G+S+++ 
Sbjct: 686 LPGWSFIEL 694



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/479 (28%), Positives = 239/479 (49%), Gaps = 45/479 (9%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG--DVANAIEFFDR 116
           D     ++I+ Y+K G  + A ++F++M  RNVV W  MI  + + G  DVA ++    R
Sbjct: 82  DSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMR 141

Query: 117 MPGRDSASLS--ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
             G   +S++   L+SG+++   L    + L  C  +   G D+  A N+++  Y + GR
Sbjct: 142 RQGIQPSSVTMLGLLSGVLELVHL----QCLHACVIQYGFGSDVALA-NSMLNVYCKCGR 196

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LE 230
           VE+A+ LF+ +              R+++SWNS++  YA+ G++    ++  +M    +E
Sbjct: 197 VEDAQALFELMDA------------RDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIE 244

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFV-KMPH---------PDTLTWNAMVSGYAQIGNL 280
            D  ++ +++S           S L V KM H          D+    +++  Y + GN+
Sbjct: 245 PDQQTFGSLVSA------AAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNV 298

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
             A   F+ M  K+++SW +MI+G   N   + A+ +F +M      P   T +S+L+  
Sbjct: 299 NSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAAC 358

Query: 341 SGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           + +    LG  +H  + +  I  D+P  N+L+TMYA+CG + ++  +F+ M   +++VSW
Sbjct: 359 AELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMS-RRDIVSW 417

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           NA++ G A +G   +AL LF  MR  +  P  IT +S+L ACA  G + +G+    + V 
Sbjct: 418 NAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKW-IHNFVT 476

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
           +  + P I    +LVD+  + G L  A      MP + D   W +++     H   E A
Sbjct: 477 KSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMP-QQDLVSWSSIIAGYGSHGKGETA 534



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 183/393 (46%), Gaps = 27/393 (6%)

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISG------YIHVLDMEEAS 253
           S+N++I   + AG        +  ML  DT     ++ +++        + H L   +  
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQ-- 72

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK-DYE 312
            + V     D+    ++++ Y++ G+ + A   F  M  +N+V W +MI GC T   +++
Sbjct: 73  RVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMI-GCYTRAGEHD 131

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALI 371
            A  ++  M+ +G +P   T   +L + SG+++L     +H  V +     DV + N+++
Sbjct: 132 VAFSMYNIMRRQGIQPSSVT---MLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSML 188

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            +Y +CG + +A+ +FE M   ++V+SWN+++ G A  G   E L+L   M++  + P  
Sbjct: 189 NVYCKCGRVEDAQALFELMD-ARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQ 247

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
            TF S++SA A    +  G+      +   G+E       SL+ +  + G +  A  + +
Sbjct: 248 QTFGSLVSAAAMQSKLGVGKM-VHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFE 306

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENSTPYVLLYNMYADVGRW 549
           GM    D   W A++     ++  ++A      ++K  V P  +T   +L    A++G +
Sbjct: 307 GM-MHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAAC-AELGSF 364

Query: 550 DDANEVR--LLMKSNNIKKPTGYSWVD-FSPCG 579
                V   +L +   +  P+  S V  ++ CG
Sbjct: 365 PLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCG 397


>gi|223948849|gb|ACN28508.1| unknown [Zea mays]
 gi|413937254|gb|AFW71805.1| hypothetical protein ZEAMMB73_337002 [Zea mays]
          Length = 608

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 171/523 (32%), Positives = 280/523 (53%), Gaps = 52/523 (9%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGD-VANAIEFFDRMPGRDS 122
           N +++ Y+       A++ F  +P +N  S+N +++  L+  D + +A   FD MP  DS
Sbjct: 71  NRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLAALLRRPDTLPDAFRLFDTMPA-DS 129

Query: 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
            +L +                                  YNTL+      GR  EA ++ 
Sbjct: 130 RNLVS----------------------------------YNTLMSSLAHHGRQVEALRVV 155

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNT 238
            ++  +   G G    +  +VS   +    A  G     RE+   +    +E      N 
Sbjct: 156 ARLARDRFLGPGLAMDRFTVVS---VATACAGIGAARPLREMHGAVVVSGMEFTVIMANA 212

Query: 239 MISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
           M++ Y     +E+A +LF ++   D +TW +M+SGY Q+  L  A+  F  MP K+ ++W
Sbjct: 213 MLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAW 272

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
            ++I+G E N + + A++LF QM  +G  P      S L   + +  +  G ++H  + +
Sbjct: 273 TALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILR 332

Query: 359 TVIPDVPIN----NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
             I  VP N    NAL+ MY++CG ++ A  +F+ M   ++ +SWN+M+ G + +G   +
Sbjct: 333 RNIGSVPFNIFIHNALVDMYSKCGDMMAAMAVFDWMPE-RDFISWNSMVTGFSHNGLGKQ 391

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           +L +F+ M    V PT++TF++VL+AC+H+GLV  GR   +SM  ++G+EPR EH+A+ +
Sbjct: 392 SLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLVLESM-EDHGVEPRAEHYAAFI 450

Query: 475 DIVGRHGRLEDAMDLIKGMP--FEPDKA-VWGALLGACRVHNNVELAQVAAEALMKVEPE 531
           D +GR+ +LE+A + IK +P    P  A  WGALLGACR+H N+ELA+  AE L ++EP 
Sbjct: 451 DALGRNHQLEEATEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPG 510

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           NS  YV++ N+YA  G+WDDA  VR LMK   +KK   YSW++
Sbjct: 511 NSGRYVMMSNIYAAAGQWDDARRVRGLMKEKGLKKDQAYSWIE 553



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 185/425 (43%), Gaps = 88/425 (20%)

Query: 52  FDIMPERDCVTWNTVISGYAKTGE-MEEALRLFNSMPA--RNVVSWNAMISGFLQNGDVA 108
           F  +P ++  ++NT+++   +  + + +A RLF++MPA  RN+VS+N ++S    +G   
Sbjct: 90  FYDLPHKNAHSYNTLLAALLRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQV 149

Query: 109 NAIEFFDRMPGRDS-------------ASLSALVSGLIQNGELDEAARVLVKCGSRCDGG 155
            A+    R+  RD               S++   +G+     L E    +V       G 
Sbjct: 150 EALRVVARL-ARDRFLGPGLAMDRFTVVSVATACAGIGAARPLREMHGAVV-----VSGM 203

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
           E  V   N ++  Y +  RVE+AR LFD++ +            R+ V+W SMI  Y + 
Sbjct: 204 EFTVIMANAMLNAYSKARRVEDARHLFDQVSI------------RDNVTWTSMISGYCQV 251

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTLT--- 266
             +  A ++F+ M ++D  +W  +ISG+    + + A  LF +M      P P  L    
Sbjct: 252 KKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSAL 311

Query: 267 ---------------------------------WNAMVSGYAQIGNLELALDFFKRMPQK 293
                                             NA+V  Y++ G++  A+  F  MP++
Sbjct: 312 GACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMMAAMAVFDWMPER 371

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM--SSGIVDLHLGMQ 351
           + +SWNSM+ G   N   + ++ +F +M V G +P   TF ++L+    SG+V  +  + 
Sbjct: 372 DFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVS-NGRLV 430

Query: 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV------SWNAMIGG 405
           +  M    V P      A I    R   + EA    E +K L + +      SW A++G 
Sbjct: 431 LESMEDHGVEPRAEHYAAFIDALGRNHQLEEAT---EFIKDLPSRIGPGTAGSWGALLGA 487

Query: 406 CASHG 410
           C  HG
Sbjct: 488 CRLHG 492



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 150/332 (45%), Gaps = 84/332 (25%)

Query: 26  VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNS 85
           V+  N M++ Y  +R    +E+AR+LFD +  RD VTW ++ISGY +  ++ EA+++F+ 
Sbjct: 207 VIMANAMLNAYSKARR---VEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDM 263

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
           MP ++ ++W A+ISG  QNG+   A+E F++M          L  G      +     VL
Sbjct: 264 MPDKDRIAWTALISGHEQNGEEDTALELFEQM----------LAKG------VSPTPFVL 307

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
           V     C                  + G V   ++L   I     R  G+V F  NI   
Sbjct: 308 VSALGAC-----------------AKLGLVTRGKELHCFI---LRRNIGSVPF--NIFIH 345

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PH 261
           N+++  Y+K GD+++A  +F+ M ERD  SWN+M++G+ H    +++  +F +M      
Sbjct: 346 NALVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVR 405

Query: 262 PDTLTWNAMVSGYAQIG-----------------------------------NLELALDF 286
           P  +T+ A+++  +  G                                    LE A +F
Sbjct: 406 PTHVTFLAVLTACSHSGLVSNGRLVLESMEDHGVEPRAEHYAAFIDALGRNHQLEEATEF 465

Query: 287 FKRMPQK----NLVSWNSMIAGCETNKDYEGA 314
            K +P +       SW +++  C  + + E A
Sbjct: 466 IKDLPSRIGPGTAGSWGALLGACRLHGNIELA 497



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 158/405 (39%), Gaps = 79/405 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++ Y K R +  AR LFD++  RD V+W  MISGY   +    L EA  +FD+MP++D 
Sbjct: 213 MLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKK---LHEAVQVFDMMPDKDR 269

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR------------------------------- 89
           + W  +ISG+ + GE + AL LF  M A+                               
Sbjct: 270 IAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCF 329

Query: 90  -----------NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGEL 138
                      N+   NA++  + + GD+  A+  FD MP RD  S +++V+G   NG  
Sbjct: 330 ILRRNIGSVPFNIFIHNALVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSHNGLG 389

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
            ++  +  +      G       +  ++      G V   R + + +    D G      
Sbjct: 390 KQSLAIFEEM--LVAGVRPTHVTFLAVLTACSHSGLVSNGRLVLESME---DHG-----V 439

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISG---YIHVLDMEE 251
           +     + + I    +   +  A E  + +  R       SW  ++     + ++   EE
Sbjct: 440 EPRAEHYAAFIDALGRNHQLEEATEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEE 499

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL-----VSWNSM----- 301
            +    ++   ++  +  M + YA  G  + A      M +K L      SW  +     
Sbjct: 500 VAEFLFRLEPGNSGRYVMMSNIYAAAGQWDDARRVRGLMKEKGLKKDQAYSWIEVRSAKH 559

Query: 302 ------IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
                 I+ CE +K YE   KL   M V  E P  H  +  L +S
Sbjct: 560 VFVADDISHCEADKIYEMLGKLLDHMSV-AEDPTEHQLNFCLDLS 603


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 183/565 (32%), Positives = 293/565 (51%), Gaps = 67/565 (11%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP-- 118
           ++    I  ++K       +R+F+ M  + +V  + ++   ++     +A++   +M   
Sbjct: 40  ISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCF 99

Query: 119 ------GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
                 G DS  LS+L+   +Q   L +A  V  K        +  V   + LI  + ++
Sbjct: 100 ALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLP------QPGVVTSSALISRFARK 153

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM---- 228
           GRV+E ++LF +          ++  + N+VSWN MI  + ++G  + A  +F+ M    
Sbjct: 154 GRVKETKELFYQTR--------DLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEG 205

Query: 229 -----------------------------------LERDTFSWNTMISGYIHVLDMEEAS 253
                                              L  D F  + +I  Y       E S
Sbjct: 206 LKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMS 265

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP--QKNLVSWNSMIAGCETN-KD 310
            +F +M   D    NA+V+G ++ G ++ AL+ FK+      N+VSW SMIA C  N KD
Sbjct: 266 GVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKD 325

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNA 369
            E A++LF +MQ+EG KP+  T   +L     I  L  G   H    +  +  DV + +A
Sbjct: 326 ME-ALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSA 384

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           LI MYA+CG ++ +R+ F+ M   +N+VSWN+++ G A HG   EA+ +F+ M+     P
Sbjct: 385 LIDMYAKCGRMLASRLCFDMMPN-RNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKP 443

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
            +++F  VLSAC   GL EEG  +F SM   +G+E R+EH++ +V ++GR GRLE+A  +
Sbjct: 444 DHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAM 503

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
           IK MPFEPD  VWGALL +CRVHN V+L ++AA+ + ++EP N   Y+LL N+YA    W
Sbjct: 504 IKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMW 563

Query: 550 DDANEVRLLMKSNNIKKPTGYSWVD 574
            + + VR +M+S  +KK  GYSW++
Sbjct: 564 VEVDMVRDMMRSRGLKKNPGYSWIE 588



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 185/415 (44%), Gaps = 63/415 (15%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP----ARNVVSWNAMISG 100
           L++AR +FD +P+   VT + +IS +A+ G ++E   LF          N+VSWN MISG
Sbjct: 125 LKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISG 184

Query: 101 FLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDE---------------- 140
           F ++G   +A+  F  M       D  S+S+++  +   G+LD                 
Sbjct: 185 FNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAV---GDLDMPLMGIQIHCYVIKQGL 241

Query: 141 -----AARVLVKCGSRCDGGEDL-----------VRAYNTLIVGYGQRGRVEEARKLFDK 184
                    L+    +C    ++           V A N L+ G  + G V+ A ++F +
Sbjct: 242 GPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQ 301

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMI 240
                 +G        N+VSW SMI   ++ G  + A E+F +M    ++ ++ +   ++
Sbjct: 302 F-----KG-----MDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLL 351

Query: 241 --SGYIHVLDMEEASNLFV--KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
              G I  L   +A++ F        D    +A++  YA+ G +  +   F  MP +NLV
Sbjct: 352 PACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLV 411

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SWNS++AG   +     AI +F  MQ  G+KPD  +F+ +LS  +       G      +
Sbjct: 412 SWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSM 471

Query: 357 TKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           ++   V   +   + ++T+  R G + EA  + ++M    +   W A++  C  H
Sbjct: 472 SRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVH 526



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 202/477 (42%), Gaps = 103/477 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF----DIMP 56
           ++  YV+   +  AR +FD++PQ  VV+ + +IS +      G ++E + LF    D+  
Sbjct: 115 LLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFAR---KGRVKETKELFYQTRDLGV 171

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSM------------------------------ 86
           E + V+WN +ISG+ ++G   +A+ +F +M                              
Sbjct: 172 ELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQ 231

Query: 87  -----------PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN 135
                      P + VVS  A+I  + +    +     F+ M   D  + +ALV+GL +N
Sbjct: 232 IHCYVIKQGLGPDKFVVS--ALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRN 289

Query: 136 GELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLF----------DK 184
           G +D A  V  +       G DL V ++ ++I    Q G+  EA +LF          + 
Sbjct: 290 GLVDNALEVFKQF-----KGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNS 344

Query: 185 IPVNC-----------DRGEGNVRFK------RNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
           + + C             G+    F        ++   +++I  YAK G ++++R  F+ 
Sbjct: 345 VTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDM 404

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELA 283
           M  R+  SWN++++GY       EA N+F  M      PD +++  ++S   Q G  E  
Sbjct: 405 MPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEG 464

Query: 284 LDFFKRMPQKNLVS-----WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
             +F  M + + V      ++ M+     +   E A  +  QM  E   PD   + ++LS
Sbjct: 465 WFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFE---PDSCVWGALLS 521

Query: 339 MSSGIVDLHLGMQIHQMVTKTVI---PDVPINNALIT-MYARCGAIVEARIIFEEMK 391
                  +H  + + ++  K V    P  P N  L++ +YA     VE  ++ + M+
Sbjct: 522 SCR----VHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMR 574


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 172/554 (31%), Positives = 284/554 (51%), Gaps = 32/554 (5%)

Query: 38  SSRGS---GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
           S+RGS   G ++    L  +    D +  N +I  YAK G++  A  +F+ MP RNVVSW
Sbjct: 14  SARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSW 73

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQ--NGELDEAARVLVKCGSRC 152
            A++ GFL +G+    +  F  M G  ++     +S  ++   G      ++   C    
Sbjct: 74  TALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGTRAGVQIHGVCVRTG 133

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
             G D+V   N+L+V Y +     +AR++FD IP             RN+ +WNSMI  Y
Sbjct: 134 FEGHDVV--ANSLVVMYSKGRWTGDARRVFDVIP------------SRNLATWNSMISGY 179

Query: 213 AKAGDVVSAREIFEQMLER-----DTFSWNTMISGYIHVLDMEEASNLFVKM------PH 261
           A AG    +  +F +M  R     D F++ +++     +    E + +   M      P 
Sbjct: 180 AHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPA 239

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            + +   A++  Y +   L +A+  F  + ++N + W ++I G       + A+ LF + 
Sbjct: 240 SNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRF 299

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAI 380
              G + D H  SS++++ +    +  G Q+H    KT    DV + N+L+ MY +CG  
Sbjct: 300 WSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLT 359

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
            EA   F EM   +NVVSW AMI G   HG   EA++LF+ M++  V    + ++++LSA
Sbjct: 360 GEAGRRFREMPA-RNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSA 418

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C+H+GLV+E R++F  +  +  + P+ EH+A +VD++GR G L +A +LI  MP EP   
Sbjct: 419 CSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVG 478

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
           VW  LL ACRVH +V + +   + L+ V+ +N   YV+L N+ A+ G W +   +R  M+
Sbjct: 479 VWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMR 538

Query: 561 SNNIKKPTGYSWVD 574
              ++K  G SW +
Sbjct: 539 RKGLRKQGGCSWTE 552



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 194/463 (41%), Gaps = 71/463 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSGFLEE 47
           +I  Y K  ++  A ++FD MP+R+VVSW  ++ G++               RGSG    
Sbjct: 45  LIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPN 104

Query: 48  ARYLFDIMP---------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSM 86
              L   +                      E   V  N+++  Y+K     +A R+F+ +
Sbjct: 105 EFTLSATLKACGGGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVI 164

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELDEA 141
           P+RN+ +WN+MISG+   G   +++  F  M  R     D  + ++L+      G   E 
Sbjct: 165 PSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREG 224

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVG-----YGQRGRVEEARKLFDKIPVNCDRGEGNV 196
           A+V      R      +  A N ++ G     Y +  R+  A ++FD +           
Sbjct: 225 AQVHAAMAVR-----GVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLE---------- 269

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA 252
             +RN + W ++I+ +A+ G V  A  +F +     +  D    +++++ +     +E+ 
Sbjct: 270 --RRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQG 327

Query: 253 SNLF---VKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             +     K P   D    N++V  Y + G    A   F+ MP +N+VSW +MI G   +
Sbjct: 328 KQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKH 387

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPDVPI 366
                AI LF +MQ EG + D   + ++LS    SG+VD            + + P    
Sbjct: 388 GHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEH 447

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
              ++ +  R G + EA+ +   M +   V  W  ++  C  H
Sbjct: 448 YACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVH 490



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 162/372 (43%), Gaps = 56/372 (15%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-----D 59
           Y K R    AR++FD +P R++ +WN MISGY  + G G   ++  +F  M  R     D
Sbjct: 148 YSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHA-GQG--RDSLLVFREMQRRHDEQPD 204

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSM------PARNVVSWNAMISGFLQNGDVANAIEF 113
             T+ +++   +  G   E  ++  +M      PA N +   A++  +++   +  A++ 
Sbjct: 205 EFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQV 264

Query: 114 FDRMPGRDSASLSALVSGLIQNGELDEAA---RVLVKCGSRCDGGEDLVRAYNTLIVGYG 170
           FD +  R++   + ++ G  Q G++ EA    R     G R DG        ++++  + 
Sbjct: 265 FDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADG-----HVLSSVVAVFA 319

Query: 171 QRGRVEEARKLF---DKIPVNCD----------------RGEGNVRFK----RNIVSWNS 207
               VE+ +++     K P   D                 GE   RF+    RN+VSW +
Sbjct: 320 DFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTA 379

Query: 208 MIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-- 261
           MI    K G    A ++FE+M    +E D  ++  ++S   H   ++E    F ++    
Sbjct: 380 MINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDR 439

Query: 262 ---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYEGAIKL 317
              P    +  MV    + G L  A +    MP +  V  W ++++ C  +KD     ++
Sbjct: 440 RMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREV 499

Query: 318 F-IQMQVEGEKP 328
             + + V+G+ P
Sbjct: 500 GDVLLAVDGDNP 511


>gi|297813281|ref|XP_002874524.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297320361|gb|EFH50783.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 688

 Score =  291 bits (744), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 191/566 (33%), Positives = 296/566 (52%), Gaps = 32/566 (5%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           DVV  N ++  ++ +   G L EA   F  +   +  +WNT+ISGY K G +EEA+ LFN
Sbjct: 141 DVVLMNSVVDMFVKN---GRLSEANSSFKEILRPNSTSWNTLISGYCKAGMVEEAVSLFN 197

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS--ALVSGL--IQNGELDE 140
            +P  N+VSWN +ISGF+  G    A+EF  RM  R+   L   AL  GL     G L  
Sbjct: 198 RIPQPNIVSWNCLISGFVDKGS-PRALEFLVRMQ-REGLVLDGFALPCGLKACSFGGLLT 255

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK-IPVNCDRGEGNVRFK 199
             + L  C  +  G E    A + LI  Y   G + +A  +F +  P  C+         
Sbjct: 256 MGKQLHGCVVK-SGLESSPFALSALIDMYSNCGSLSDAADVFHQEKPALCN--------- 305

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV--------LDMEE 251
             +  WNSM+  +    +  +A  +   + + D    +  +SG + +        L ++ 
Sbjct: 306 -TVAVWNSMLSGFLINEENEAALGLLLLLYKSDLCFDSYTLSGALKICINLVNLRLGLQV 364

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
            S + V     D +  + +V  +A +GN++ A   F R+P K++++++ +I GC  +   
Sbjct: 365 HSLVVVSGYELDYIVGSILVDLHANVGNIQEAHKLFHRLPNKDIIAFSGLIRGCVKSGFN 424

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPIN-NAL 370
             A  LF ++   G   D+   SSIL + S +  L  G QIH +  K      P+   AL
Sbjct: 425 SLAFYLFRELIKLGLDADQFIVSSILKVCSSLASLGCGKQIHGLCIKKGYQSEPVTATAL 484

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
             MY +CG I  + ++F+ M L ++VVSW  +I G   +G   EA + F  M + ++ P 
Sbjct: 485 GDMYVKCGEIDNSVVLFDGM-LERDVVSWTGIIVGFGQNGRVEEAFQYFHKMINSEIEPN 543

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            +TF+ +LSAC H+GL+EE R   ++M  EYG+EP +EH+  +VD++G+ GR ++A +LI
Sbjct: 544 EVTFLGLLSACRHSGLLEEARSILETMKCEYGLEPYLEHYYCVVDLLGQAGRFQEAEELI 603

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           K MP EPDK +W +LL AC  H N  L  V AE L+K  PE+ + Y  L N YA +G WD
Sbjct: 604 KKMPLEPDKTIWMSLLTACGTHKNAGLITVIAEKLLKAFPEDPSLYTSLSNAYATLGMWD 663

Query: 551 DANEVRLLMKSNNIKKPTGYSWVDFS 576
             +EVR   K    K+ +G SW++F+
Sbjct: 664 QLSEVREAAKKLGAKE-SGMSWIEFA 688



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 161/345 (46%), Gaps = 75/345 (21%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N VIS Y     + +A ++F+ M  RN+V+W  M+SG+  +G  + AIE + RM      
Sbjct: 44  NNVISMYVDFRLLSDAHKVFDEMTERNIVTWTTMVSGYTCDGKPSKAIELYRRM------ 97

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
                    +++ E  EAA   +               Y+ ++   G  G ++    +++
Sbjct: 98  ---------VESQE--EAANEFI---------------YSAVLKACGLVGDIQLGSFVYE 131

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           +I        G    K ++V  NS++  + K G +  A   F+++L  ++ SWNT+ISGY
Sbjct: 132 RI--------GKENLKGDVVLMNSVVDMFVKNGRLSEANSSFKEILRPNSTSWNTLISGY 183

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                +EEA +LF ++P P+ ++WN ++SG+   G+   AL+F  RM ++ LV  +    
Sbjct: 184 CKAGMVEEAVSLFNRIPQPNIVSWNCLISGFVDKGSPR-ALEFLVRMQREGLV-LDGFAL 241

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363
            C                   G K    +F  +L+M         G Q+H  V K+ +  
Sbjct: 242 PC-------------------GLKA--CSFGGLLTM---------GKQLHGCVVKSGLES 271

Query: 364 VPIN-NALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGG 405
            P   +ALI MY+ CG++ +A  +F + K  L   V  WN+M+ G
Sbjct: 272 SPFALSALIDMYSNCGSLSDAADVFHQEKPALCNTVAVWNSMLSG 316



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 142/317 (44%), Gaps = 24/317 (7%)

Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
           K G+ + A  I +Q + ++ F  N +IS Y+    + +A  +F +M   + +TW  MVSG
Sbjct: 22  KRGESIQAH-IVKQGISQNVFLANNVISMYVDFRLLSDAHKVFDEMTERNIVTWTTMVSG 80

Query: 274 YAQIGNLELALDFFKRMPQK-----NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           Y   G    A++ ++RM +      N   +++++  C    D +    ++ ++  E  K 
Sbjct: 81  YTCDGKPSKAIELYRRMVESQEEAANEFIYSAVLKACGLVGDIQLGSFVYERIGKENLKG 140

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFE 388
           D    +S++ M    V      + +    + + P+    N LI+ Y + G + EA  +F 
Sbjct: 141 DVVLMNSVVDM---FVKNGRLSEANSSFKEILRPNSTSWNTLISGYCKAGMVEEAVSLFN 197

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
            +    N+VSWN +I G    G +  ALE    M+   ++         L AC+  GL+ 
Sbjct: 198 RIP-QPNIVSWNCLISGFVDKG-SPRALEFLVRMQREGLVLDGFALPCGLKACSFGGLLT 255

Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK-------AV 501
            G+Q     V + G+E      ++L+D+    G L DA D+     F  +K       AV
Sbjct: 256 MGKQ-LHGCVVKSGLESSPFALSALIDMYSNCGSLSDAADV-----FHQEKPALCNTVAV 309

Query: 502 WGALLGACRVHNNVELA 518
           W ++L    ++   E A
Sbjct: 310 WNSMLSGFLINEENEAA 326


>gi|293336045|ref|NP_001168520.1| uncharacterized protein LOC100382300 [Zea mays]
 gi|195615774|gb|ACG29717.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
 gi|223946951|gb|ACN27559.1| unknown [Zea mays]
          Length = 616

 Score =  291 bits (744), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/523 (32%), Positives = 280/523 (53%), Gaps = 52/523 (9%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGD-VANAIEFFDRMPGRDS 122
           N +++ Y+       A++ F  +P +N  S+N +++  L+  D + +A   FD MP  DS
Sbjct: 79  NRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLAALLRRPDTLPDAFRLFDTMPA-DS 137

Query: 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
            +L +                                  YNTL+      GR  EA ++ 
Sbjct: 138 RNLVS----------------------------------YNTLMSSLAHHGRQVEALRVV 163

Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNT 238
            ++  +   G G    +  +VS   +    A  G     RE+   +    +E      N 
Sbjct: 164 ARLARDRFLGPGLAMDRFTVVS---VATACAGIGAARPLREMHGAVVVSGMEFTVIMANA 220

Query: 239 MISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSW 298
           M++ Y     +E+A +LF ++   D +TW +M+SGY Q+  L  A+  F  MP K+ ++W
Sbjct: 221 MLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAW 280

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
            ++I+G E N + + A++LF QM  +G  P      S L   + +  +  G ++H  + +
Sbjct: 281 TALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILR 340

Query: 359 TVIPDVPIN----NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
             I  VP N    NAL+ MY++CG ++ A  +F+ M   ++ +SWN+M+ G + +G   +
Sbjct: 341 RNIGSVPFNIFIHNALVDMYSKCGDMMAAMAVFDWMPE-RDFISWNSMVTGFSHNGLGKQ 399

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           +L +F+ M    V PT++TF++VL+AC+H+GLV  GR   +SM  ++G+EPR EH+A+ +
Sbjct: 400 SLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLVLESM-EDHGVEPRAEHYAAFI 458

Query: 475 DIVGRHGRLEDAMDLIKGMP--FEPDKA-VWGALLGACRVHNNVELAQVAAEALMKVEPE 531
           D +GR+ +LE+A + IK +P    P  A  WGALLGACR+H N+ELA+  AE L ++EP 
Sbjct: 459 DALGRNHQLEEATEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPG 518

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           NS  YV++ N+YA  G+WDDA  VR LMK   +KK   YSW++
Sbjct: 519 NSGRYVMMSNIYAAAGQWDDARRVRGLMKEKGLKKDQAYSWIE 561



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 185/425 (43%), Gaps = 88/425 (20%)

Query: 52  FDIMPERDCVTWNTVISGYAKTGE-MEEALRLFNSMPA--RNVVSWNAMISGFLQNGDVA 108
           F  +P ++  ++NT+++   +  + + +A RLF++MPA  RN+VS+N ++S    +G   
Sbjct: 98  FYDLPHKNAHSYNTLLAALLRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQV 157

Query: 109 NAIEFFDRMPGRDS-------------ASLSALVSGLIQNGELDEAARVLVKCGSRCDGG 155
            A+    R+  RD               S++   +G+     L E    +V       G 
Sbjct: 158 EALRVVARL-ARDRFLGPGLAMDRFTVVSVATACAGIGAARPLREMHGAVV-----VSGM 211

Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
           E  V   N ++  Y +  RVE+AR LFD++ +            R+ V+W SMI  Y + 
Sbjct: 212 EFTVIMANAMLNAYSKARRVEDARHLFDQVSI------------RDNVTWTSMISGYCQV 259

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTLT--- 266
             +  A ++F+ M ++D  +W  +ISG+    + + A  LF +M      P P  L    
Sbjct: 260 KKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSAL 319

Query: 267 ---------------------------------WNAMVSGYAQIGNLELALDFFKRMPQK 293
                                             NA+V  Y++ G++  A+  F  MP++
Sbjct: 320 GACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMMAAMAVFDWMPER 379

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM--SSGIVDLHLGMQ 351
           + +SWNSM+ G   N   + ++ +F +M V G +P   TF ++L+    SG+V  +  + 
Sbjct: 380 DFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVS-NGRLV 438

Query: 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV------SWNAMIGG 405
           +  M    V P      A I    R   + EA    E +K L + +      SW A++G 
Sbjct: 439 LESMEDHGVEPRAEHYAAFIDALGRNHQLEEAT---EFIKDLPSRIGPGTAGSWGALLGA 495

Query: 406 CASHG 410
           C  HG
Sbjct: 496 CRLHG 500



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 150/332 (45%), Gaps = 84/332 (25%)

Query: 26  VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNS 85
           V+  N M++ Y  +R    +E+AR+LFD +  RD VTW ++ISGY +  ++ EA+++F+ 
Sbjct: 215 VIMANAMLNAYSKARR---VEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDM 271

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
           MP ++ ++W A+ISG  QNG+   A+E F++M          L  G      +     VL
Sbjct: 272 MPDKDRIAWTALISGHEQNGEEDTALELFEQM----------LAKG------VSPTPFVL 315

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
           V     C                  + G V   ++L   I     R  G+V F  NI   
Sbjct: 316 VSALGAC-----------------AKLGLVTRGKELHCFI---LRRNIGSVPF--NIFIH 353

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PH 261
           N+++  Y+K GD+++A  +F+ M ERD  SWN+M++G+ H    +++  +F +M      
Sbjct: 354 NALVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVR 413

Query: 262 PDTLTWNAMVSGYAQIG-----------------------------------NLELALDF 286
           P  +T+ A+++  +  G                                    LE A +F
Sbjct: 414 PTHVTFLAVLTACSHSGLVSNGRLVLESMEDHGVEPRAEHYAAFIDALGRNHQLEEATEF 473

Query: 287 FKRMPQK----NLVSWNSMIAGCETNKDYEGA 314
            K +P +       SW +++  C  + + E A
Sbjct: 474 IKDLPSRIGPGTAGSWGALLGACRLHGNIELA 505



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 158/405 (39%), Gaps = 79/405 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++ Y K R +  AR LFD++  RD V+W  MISGY   +    L EA  +FD+MP++D 
Sbjct: 221 MLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKK---LHEAVQVFDMMPDKDR 277

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR------------------------------- 89
           + W  +ISG+ + GE + AL LF  M A+                               
Sbjct: 278 IAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCF 337

Query: 90  -----------NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGEL 138
                      N+   NA++  + + GD+  A+  FD MP RD  S +++V+G   NG  
Sbjct: 338 ILRRNIGSVPFNIFIHNALVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSHNGLG 397

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
            ++  +  +      G       +  ++      G V   R + + +    D G      
Sbjct: 398 KQSLAIFEEM--LVAGVRPTHVTFLAVLTACSHSGLVSNGRLVLESME---DHG-----V 447

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISG---YIHVLDMEE 251
           +     + + I    +   +  A E  + +  R       SW  ++     + ++   EE
Sbjct: 448 EPRAEHYAAFIDALGRNHQLEEATEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEE 507

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL-----VSWNSM----- 301
            +    ++   ++  +  M + YA  G  + A      M +K L      SW  +     
Sbjct: 508 VAEFLFRLEPGNSGRYVMMSNIYAAAGQWDDARRVRGLMKEKGLKKDQAYSWIEVRSAKH 567

Query: 302 ------IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
                 I+ CE +K YE   KL   M V  E P  H  +  L +S
Sbjct: 568 VFVADDISHCEADKIYEMLGKLLDHMSV-AEDPTEHQLNFCLDLS 611


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 213/688 (30%), Positives = 328/688 (47%), Gaps = 119/688 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           +++ Y K + + +AR LFD MP RDVV WNVM+  Y+   G+G  +E   LF        
Sbjct: 163 LVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVE-MGAG--DEVLGLFSAFHRSGL 219

Query: 59  --DCVTWNTVISGYAKTG----EMEE----ALRLFNSMPARNVVSWNAMISGFLQNGDVA 108
             DCV+  T++ G  K      E+E+    A +LF      +V  WN  +S +LQ G+  
Sbjct: 220 RPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGW 279

Query: 109 NAIEFF-DRMPGR---DS----------ASLSALVSGLIQNGEL------------DEAA 142
            A++ F D +  R   DS          ASL+ L  G   +G +            + A 
Sbjct: 280 EAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAI 339

Query: 143 RVLVKCGS----RCDGGE----DLVRAYNTLIVGYGQRGRVEEARKLF----------DK 184
            + VK GS    R   G+    DL+ ++NT+I G  + G  E + +LF          D+
Sbjct: 340 NMYVKAGSVNYARRMFGQMKEVDLI-SWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQ 398

Query: 185 IPVN-----CDRGEGNVRFKRNIVSW-------------NSMIMCYAKAGDVVSAREIFE 226
             +      C   E +    R + +               ++I  Y+K G +  A  +F 
Sbjct: 399 FTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFH 458

Query: 227 QMLERDTFSWNTMISGYIHVLDMEEASNLF------------------------------ 256
                D  SWN M+ G+    +  EA  LF                              
Sbjct: 459 NQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQ 518

Query: 257 --------VKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
                   +KM  H D    + ++  Y + G ++ A   F ++P  + V+W ++I+GC  
Sbjct: 519 GKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVE 578

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-I 366
           N + E A+  + QM++ G +PD +TF++++   S +  L  G QIH  + K      P +
Sbjct: 579 NGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV 638

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
             +L+ MYA+CG I +A  +F  M   ++V  WNAMI G A HG A EAL  F  M+S  
Sbjct: 639 MTSLVDMYAKCGNIEDAYGLFRRMNT-RSVALWNAMIVGLAQHGNAEEALNFFNEMKSRG 697

Query: 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           V P  +TFI VLSAC+H+GL  +  ++F SM   YG+EP IEH++ LVD + R G +++A
Sbjct: 698 VTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEA 757

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
             ++  MPFE    ++  LL ACRV  + E  +  AE L  ++P +S  YVLL N+YA  
Sbjct: 758 EKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAA 817

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            +W++A   R +MK  N+KK  G+SW+D
Sbjct: 818 NQWENAVSARNMMKRVNVKKEPGFSWID 845



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 174/639 (27%), Positives = 267/639 (41%), Gaps = 127/639 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQ--RDVVSWNVMISGYISSRGSGFLE---EARYLFDIM 55
           +I+ Y K   +  ARKLFD  PQ  RD+V++N +++ Y  +     +E   EA ++F ++
Sbjct: 54  LITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLL 113

Query: 56  PERDCVT----------------------------------WNTVISG-----YAKTGEM 76
            +   +T                                  W+  ++G     YAK   +
Sbjct: 114 RQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRI 173

Query: 77  EEALRLFNSMPARNVVSWNAMISGFLQNG---DVANAIEFFDRMPGR-DSASLSALVSGL 132
            EA  LF+ MP R+VV WN M+  +++ G   +V      F R   R D  S+  ++ G+
Sbjct: 174 REARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGV 233

Query: 133 IQNGELD---EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD---KIP 186
            +    +   E  R        CD   D V  +N  +  Y Q G   EA   F    K  
Sbjct: 234 GKKTVFERELEQVRAYATKLFVCDDDSD-VTVWNKTLSSYLQAGEGWEAVDCFRDMIKSR 292

Query: 187 VNCDR----------------------GEGNVRF--KRNIVSWNSMIMCYAKAGDVVSAR 222
           V CD                           VRF   + +   NS I  Y KAG V  AR
Sbjct: 293 VPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYAR 352

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEAS-NLFVKMPH----PDTLTW---------- 267
            +F QM E D  SWNT+ISG      +EE S  LF+ +      PD  T           
Sbjct: 353 RMFGQMKEVDLISWNTVISGCARS-GLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSL 411

Query: 268 --------------------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
                                      A++  Y++ G +E A   F      +L SWN+M
Sbjct: 412 EESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAM 471

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
           + G   + +Y  A++LF  M   GEK D+ TF++    +  +V L  G QIH +V K   
Sbjct: 472 MHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRF 531

Query: 362 P-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
             D+ + + ++ MY +CG +  AR +F ++    + V+W  +I GC  +G   +AL  + 
Sbjct: 532 HYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDD-VAWTTVISGCVENGEEEQALFTYH 590

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGR 479
            MR   V P   TF +++ AC+    +E+G+Q H   M      +P +    SLVD+  +
Sbjct: 591 QMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV--MTSLVDMYAK 648

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            G +EDA  L + M      A+W A++     H N E A
Sbjct: 649 CGNIEDAYGLFRRMNTRS-VALWNAMIVGLAQHGNAEEA 686



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 132/545 (24%), Positives = 227/545 (41%), Gaps = 119/545 (21%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPA--RNVVSWNAMISGFLQNG---DVANAIEFFD--- 115
           N +I+ YAK G +  A +LF+  P   R++V++NA+++ +   G   DV    E F    
Sbjct: 52  NNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFR 111

Query: 116 ------RMPGRDSASLSALVSGLIQNGELDEAAR-VLVKCGSRCDGGEDLVRAYNTLIVG 168
                  +  R + S    +  L  +    EA +   VK G + D     V     L+  
Sbjct: 112 LLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWD-----VFVAGALVNI 166

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG------------ 216
           Y +  R+ EAR LFD++PV            R++V WN M+  Y + G            
Sbjct: 167 YAKFQRIREARVLFDRMPV------------RDVVLWNVMMKAYVEMGAGDEVLGLFSAF 214

Query: 217 -------DVVSAREI---------FEQMLER---------------DTFSWNTMISGYIH 245
                  D VS R I         FE+ LE+               D   WN  +S Y+ 
Sbjct: 215 HRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQ 274

Query: 246 VLDMEEASNLFVKMPHP----DTLTW---------------------------------- 267
             +  EA + F  M       D+LT+                                  
Sbjct: 275 AGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSV 334

Query: 268 -NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
            N+ ++ Y + G++  A   F +M + +L+SWN++I+GC  +   E +++LFI +   G 
Sbjct: 335 ANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGL 394

Query: 327 KPDRHTFSSILSMSSGIVDLH-LGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEAR 384
            PD+ T +S+L   S + + + +G Q+H    K  ++ D  ++ ALI +Y++ G + EA 
Sbjct: 395 LPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAE 454

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
           ++F       ++ SWNAM+ G        EAL LF  M         ITF +   A    
Sbjct: 455 LLFHNQDGF-DLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCL 513

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
             +++G+Q   ++V +      +   + ++D+  + G ++ A  +   +P  PD   W  
Sbjct: 514 VRLQQGKQ-IHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIP-SPDDVAWTT 571

Query: 505 LLGAC 509
           ++  C
Sbjct: 572 VISGC 576



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 10/182 (5%)

Query: 335 SILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFE-EMKL 392
           SIL  +    DL LG + H  +VT  + PD  + N LITMYA+CG++  AR +F+   + 
Sbjct: 18  SILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQS 77

Query: 393 LKNVVSWNAMIGGCASHG------FATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
            +++V++NA++   A  G         EA  +F+ +R   +L T  T   +   C   G 
Sbjct: 78  DRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYG- 136

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
                +  +    + G++  +    +LV+I  +  R+ +A  L   MP   D  +W  ++
Sbjct: 137 SPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVR-DVVLWNVMM 195

Query: 507 GA 508
            A
Sbjct: 196 KA 197



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 12/188 (6%)

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ--KNLVSWNSMIAGC-------ETNKDY 311
           +PD    N +++ YA+ G+L  A   F   PQ  ++LV++N+++A         +  K +
Sbjct: 45  NPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTH 104

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNAL 370
           E A  +F  ++       RHT S +  +            +     K  +  DV +  AL
Sbjct: 105 E-AFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGAL 163

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           + +YA+   I EAR++F+ M  +++VV WN M+      G   E L LF +     + P 
Sbjct: 164 VNIYAKFQRIREARVLFDRMP-VRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPD 222

Query: 431 YITFISVL 438
            ++  ++L
Sbjct: 223 CVSVRTIL 230


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 185/609 (30%), Positives = 302/609 (49%), Gaps = 87/609 (14%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSM------PAR------- 89
           G  + AR +FD M +R+ V W T+I  Y + GE + A  ++N M      P+        
Sbjct: 97  GHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLL 156

Query: 90  -----------------------NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS 126
                                  +V   N+M++ + + G V +A   F+ M  RD  S +
Sbjct: 157 SGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWN 216

Query: 127 ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
           +LVSG  Q G + E  ++L++   + DG E   + + +L+     + ++   + +   I 
Sbjct: 217 SLVSGYAQLGNIREVLQLLIR--MKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHIL 274

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246
                 + ++          S+I  Y K G+V SA  IFE M+ +D  SW  MISG +  
Sbjct: 275 RAGLEQDSHIE--------TSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQN 326

Query: 247 LDMEEASNLFVKMPH----PDTLT-----------------------------------W 267
              + A  +F +M      P T T                                    
Sbjct: 327 DCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQ 386

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           N++V+ YA+ G+LE +   F RM ++++VSWN++++G   N     A+ LF +M+   ++
Sbjct: 387 NSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQR 446

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARII 386
           PD  T  S+L   + I  LH G  IH  VTK+ + P + I+ AL+ MY++CG +  A+  
Sbjct: 447 PDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKC 506

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+ M   +++VSW+++I G  SHG    AL ++       + P ++ ++S+LSAC+H GL
Sbjct: 507 FDRMPQ-QDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGL 565

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           V++G   F SM  ++GIEPR+EH A +VD++ R GR+E+A    K M  +P   V G LL
Sbjct: 566 VDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILL 625

Query: 507 GACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
            ACR   NVEL  + A  ++ ++P N+  YV L + YA + RWD   EV   MKS ++KK
Sbjct: 626 DACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKK 685

Query: 567 PTGYSWVDF 575
             G+S+++ 
Sbjct: 686 LPGWSFIEL 694



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/479 (28%), Positives = 239/479 (49%), Gaps = 45/479 (9%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG--DVANAIEFFDR 116
           D     ++I+ Y+K G  + A ++F++M  RNVV W  MI  + + G  DVA ++    R
Sbjct: 82  DSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMR 141

Query: 117 MPGRDSASLS--ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
             G   +S++   L+SG+++   L    + L  C  +   G D+  A N+++  Y + GR
Sbjct: 142 RQGIQPSSVTMLGLLSGVLELVHL----QCLHACVIQYGFGSDVALA-NSMLNVYCKCGR 196

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LE 230
           VE+A+ LF+ +              R+++SWNS++  YA+ G++    ++  +M    +E
Sbjct: 197 VEDAQALFELMDA------------RDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIE 244

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFV-KMPH---------PDTLTWNAMVSGYAQIGNL 280
            D  ++ +++S           S L V KM H          D+    +++  Y + GN+
Sbjct: 245 PDQQTFGSLVSA------AAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNV 298

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
             A   F+ M  K+++SW +MI+G   N   + A+ +F +M      P   T +S+L+  
Sbjct: 299 NSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAAC 358

Query: 341 SGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           + +    LG  +H  + +  I  D+P  N+L+TMYA+CG + ++  +F+ M   +++VSW
Sbjct: 359 AELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMS-RRDIVSW 417

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           NA++ G A +G   +AL LF  MR  +  P  IT +S+L ACA  G + +G+    + V 
Sbjct: 418 NAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKW-IHNFVT 476

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
           +  + P I    +LVD+  + G L  A      MP + D   W +++     H   E A
Sbjct: 477 KSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMP-QQDLVSWSSIIAGYGSHGKGETA 534



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 183/393 (46%), Gaps = 27/393 (6%)

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISG------YIHVLDMEEAS 253
           S+N++I   + AG        +  ML  DT     ++ +++        + H L   +  
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQ-- 72

Query: 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK-DYE 312
            + V     D+    ++++ Y++ G+ + A   F  M  +N+V W +MI GC T   +++
Sbjct: 73  RVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMI-GCYTRAGEHD 131

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALI 371
            A  ++  M+ +G +P   T   +L + SG+++L     +H  V +     DV + N+++
Sbjct: 132 VAFSMYNIMRRQGIQPSSVT---MLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSML 188

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            +Y +CG + +A+ +FE M   ++V+SWN+++ G A  G   E L+L   M++  + P  
Sbjct: 189 NVYCKCGRVEDAQALFELMD-ARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQ 247

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
            TF S++SA A    +  G+      +   G+E       SL+ +  + G +  A  + +
Sbjct: 248 QTFGSLVSAAAMQSKLGVGKM-VHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFE 306

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENSTPYVLLYNMYADVGRW 549
           GM    D   W A++     ++  ++A      ++K  V P  +T   +L    A++G +
Sbjct: 307 GM-MHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAAC-AELGSF 364

Query: 550 DDANEVR--LLMKSNNIKKPTGYSWVD-FSPCG 579
                V   +L +   +  P+  S V  ++ CG
Sbjct: 365 PLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCG 397


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 184/554 (33%), Positives = 280/554 (50%), Gaps = 75/554 (13%)

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR---------MPGRDSAS 124
           G+   A +LF+++P  +  + + +IS    +G    AI+ +           MP   +A+
Sbjct: 112 GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 171

Query: 125 LSALVSG-LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
            +  VSG  ++  E+ + A    +CG   D     V   N LI  YG+   VE AR++FD
Sbjct: 172 KACAVSGDALRVKEVHDDA---TRCGVMSD-----VFVGNALIHAYGKCKCVEGARRVFD 223

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--------------- 228
            + V            R++VSW S+  CY K G      ++F +M               
Sbjct: 224 DLVV------------RDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSI 271

Query: 229 ------------------------LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDT 264
                                   +  + F  + ++S Y   L + EA  +F  MPH D 
Sbjct: 272 LPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDV 331

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNL----VSWNSMIAGCETNKDYEGAIKLFIQ 320
           ++WN +++ Y +    E     F +M +  +     +WN++I GC  N   E A+++F +
Sbjct: 332 VSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRK 391

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGA 379
           MQ  G KP+  T SSIL   S   +L +G +IH  V +   + D+    AL+ MYA+CG 
Sbjct: 392 MQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGD 451

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           +  +R +F+ M+  K+VV+WN MI   A HG   EAL LF  M   +V P  +TF  VLS
Sbjct: 452 LNLSRNVFDMMRR-KDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLS 510

Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
            C+H+ LVEEG Q F SM  ++ +EP   H++ +VDI  R GRL +A   I+GMP EP  
Sbjct: 511 GCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTA 570

Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
           + WGALL ACRV+ NVELA+++A+ L ++EP N   YV L+N+      W +A++VR+LM
Sbjct: 571 SAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILM 630

Query: 560 KSNNIKKPTGYSWV 573
           K   I K  G SW+
Sbjct: 631 KERGITKTPGCSWL 644



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 177/418 (42%), Gaps = 102/418 (24%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS----RG---------SGFLEE 47
           +I  Y K + +  AR++FD++  RDVVSW  + S Y+      +G         SG    
Sbjct: 205 LIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPN 264

Query: 48  ARYLFDIMPE-----------------------RDCVTWNTVISGYAKTGEMEEALRLFN 84
              +  I+P                         +    + ++S YAK   + EA  +F+
Sbjct: 265 PMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFD 324

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDE 140
            MP R+VVSWN +++ + +N +       F +M       D A+ +A++ G ++NG  +E
Sbjct: 325 LMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEE 384

Query: 141 AA---RVLVKCGSR------------CDGGEDL------------------VRAYNTLIV 167
           A    R + K G +            C   E+L                  + +   L+ 
Sbjct: 385 AVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLY 444

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
            Y + G +  +R +FD +             ++++V+WN+MI+  A  G+   A  +F++
Sbjct: 445 MYAKCGDLNLSRNVFDMMR------------RKDVVAWNTMIIANAMHGNGKEALFLFDK 492

Query: 228 ML----ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIG 278
           ML    + ++ ++  ++SG  H   +EE   +F  M       PD   ++ +V  Y++ G
Sbjct: 493 MLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAG 552

Query: 279 NLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYE----GAIKLFIQMQVEGEKPDRH 331
            L  A  F + MP +   S W +++A C   K+ E     A KLF   ++E   P  +
Sbjct: 553 RLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLF---EIEPNNPGNY 607



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 4/234 (1%)

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
            +G+   A   F  +PQ +  + +++I+   T+     AIK++  +Q  G KPD   F +
Sbjct: 110 NVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLA 169

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
                +   D     ++H   T+  V+ DV + NALI  Y +C  +  AR +F+++ +++
Sbjct: 170 AAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDL-VVR 228

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           +VVSW ++       GF  + +++F+ M    V P  +T  S+L ACA    ++ G++  
Sbjct: 229 DVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKE-I 287

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
                 +G+   +   ++LV +  +   + +A  +   MP   D   W  +L A
Sbjct: 288 HGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNGVLTA 340


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 186/519 (35%), Positives = 280/519 (53%), Gaps = 39/519 (7%)

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALV 129
           GE+  A ++F+  P  +V  WNA+I G+  +    +AIE + RM       D  +L  ++
Sbjct: 117 GEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVL 176

Query: 130 SGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
                   L+   RV   + + G   D     V   N L+  Y + GRVE+AR +F+ + 
Sbjct: 177 KACSGVPVLEVGKRVHGQIFRLGFESD-----VFVQNGLVALYAKCGRVEQARIVFEGLD 231

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-SWNTMIS---G 242
                        RNIVSW SMI  Y + G  + A  IF QM +R+    W  ++S    
Sbjct: 232 ------------DRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRA 279

Query: 243 YIHVLDMEEASNL---FVKMP---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
           Y  V D+E+  ++    VKM     PD L   ++ + YA+ G + +A  FF +M   N++
Sbjct: 280 YTDVEDLEQGKSIHGCVVKMGLEFEPDLLI--SLTAMYAKCGQVMVARSFFDQMEIPNVM 337

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
            WN+MI+G   N     A+ LF +M  +  + D  T  S +   + +  L L   +   +
Sbjct: 338 MWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYI 397

Query: 357 TKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            KT    DV +N ALI M+A+CG++  AR +F+   L K+VV W+AMI G   HG   +A
Sbjct: 398 NKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDR-TLDKDVVVWSAMIVGYGLHGRGQDA 456

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           ++LF +M+   V P  +TF+ +L+AC H+GLVEEG + F SM   YGIE R +H+A +VD
Sbjct: 457 IDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVD 515

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++GR G L +A D I  MP EP  +VWGALLGAC+++ +V L + AAE L  ++P N+  
Sbjct: 516 LLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGH 575

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           YV L N+YA    WD   +VR+LM+   + K  GYS ++
Sbjct: 576 YVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIE 614



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 197/450 (43%), Gaps = 71/450 (15%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSR----------------------------- 40
           E+  ARK+FDE P+  V  WN +I GY S                               
Sbjct: 118 EIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLK 177

Query: 41  ---GSGFLEEAR----YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS 93
              G   LE  +     +F +  E D    N +++ YAK G +E+A  +F  +  RN+VS
Sbjct: 178 ACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVS 237

Query: 94  WNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LV 146
           W +MISG+ QNG    A+  F +M  R    D  +L +++       +L++   +   +V
Sbjct: 238 WTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVV 297

Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
           K G   +   DL+    +L   Y + G+V  AR  FD++ +             N++ WN
Sbjct: 298 KMGLEFE--PDLLI---SLTAMYAKCGQVMVARSFFDQMEIP------------NVMMWN 340

Query: 207 SMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHV--LDMEEASNLFVKMP 260
           +MI  YAK G    A  +F++M+ +    D+ +  + I     V  LD+ +    ++   
Sbjct: 341 AMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKT 400

Query: 261 --HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
               D     A++  +A+ G+++LA + F R   K++V W++MI G   +   + AI LF
Sbjct: 401 EYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLF 460

Query: 319 IQMQVEGEKPDRHTFSSILSM--SSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYAR 376
             M+  G  P+  TF  +L+    SG+V+    +  H M    +         ++ +  R
Sbjct: 461 YAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWEL-FHSMKYYGIEARHQHYACVVDLLGR 519

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
            G + EA      M +   V  W A++G C
Sbjct: 520 SGHLNEAYDFITTMPIEPGVSVWGALLGAC 549



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 4/231 (1%)

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
           IG +  A   F   P+ ++  WN++I G  ++  +  AI+++ +MQ  G  PD  T   +
Sbjct: 116 IGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCV 175

Query: 337 LSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           L   SG+  L +G ++H Q+       DV + N L+ +YA+CG + +ARI+FE +   +N
Sbjct: 176 LKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLD-DRN 234

Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
           +VSW +MI G   +G   EAL +F  MR   V P +I  +SVL A      +E+G+    
Sbjct: 235 IVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKS-IH 293

Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             V + G+E   +   SL  +  + G++  A      M   P+  +W A++
Sbjct: 294 GCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEI-PNVMMWNAMI 343



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 148/361 (40%), Gaps = 75/361 (20%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD- 59
           +++ Y K   + +AR +F+ +  R++VSW  MISGY     +G   EA  +F  M +R+ 
Sbjct: 210 LVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQ---NGLPMEALRIFGQMRQRNV 266

Query: 60  ----------------------------CVT----------WNTVISGYAKTGEMEEALR 81
                                       CV             ++ + YAK G++  A  
Sbjct: 267 KPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARS 326

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
            F+ M   NV+ WNAMISG+ +NG    A+  F  M  +    DS ++ + +    Q G 
Sbjct: 327 FFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGS 386

Query: 138 LDEA---ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           LD A      + K   R D     V     LI  + + G V+ AR++FD+          
Sbjct: 387 LDLAKWMGDYINKTEYRND-----VFVNTALIDMFAKCGSVDLAREVFDRT--------- 432

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI----HVLDME 250
                +++V W++MI+ Y   G    A ++F  M +      +    G +    H   +E
Sbjct: 433 ---LDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVE 489

Query: 251 EASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGC 305
           E   LF  M +         +  +V    + G+L  A DF   MP +  VS W +++  C
Sbjct: 490 EGWELFHSMKYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGAC 549

Query: 306 E 306
           +
Sbjct: 550 K 550


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/371 (41%), Positives = 230/371 (61%), Gaps = 6/371 (1%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N+ I  Y  AG V  AR +F+ M  RDT S+N+MI GY    D+  A  LF ++  P  +
Sbjct: 50  NAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERVLAPTPV 109

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           TW +MV+G+ + G++E A   F+ MP+++LVSWN+MI+GC  N+    A+ LF  M  EG
Sbjct: 110 TWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEG 169

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEAR 384
             P+R T  S+LS  +G   L  G  +H  V K  +  D  +  AL+ MYA+CGA+  A 
Sbjct: 170 FVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELAL 229

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR-SFKVLPTYITFISVLSACAH 443
            +F  ++  +N  +WNAMI G A +G++ +AL++F+ M  +  V P  +TF+ VL AC+H
Sbjct: 230 EVFTGLR-ARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSH 288

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           AG V+ G++HF ++  +YG+E  +EH+A +VD++ R G L++A  LI  MP +PD  VW 
Sbjct: 289 AGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWR 348

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
           ALLG CR+H NV++A+     + ++E   S  +VLL N+YA VGRW+   +VR  M+S  
Sbjct: 349 ALLGGCRLHKNVKMAE---NVISEMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKG 405

Query: 564 IKKPTGYSWVD 574
           I+K  G S V+
Sbjct: 406 IEKIPGCSSVE 416



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 159/339 (46%), Gaps = 36/339 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
            I GY     +  AR++FD MP+RD VS+N MI GY     SG +  A+ LF+ +     
Sbjct: 52  FIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAV---SGDVGSAQRLFERVLAPTP 108

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
           VTW ++++G+ + G++E A R+F  MP R++VSWNAMISG + N     A+  F  M   
Sbjct: 109 VTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEE 168

Query: 118 ---PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
              P R   ++ +++S     G L+    V V    +    ++ +     L+  Y + G 
Sbjct: 169 GFVPNR--GTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLG--TALVDMYAKCGA 224

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-----L 229
           VE A ++F  +              RN  +WN+MI   A  G    A ++F QM     +
Sbjct: 225 VELALEVFTGLRA------------RNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTV 272

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT-----WNAMVSGYAQIGNLELAL 284
             D  ++  ++    H   ++     F  +P    +      +  MV   A+ G+L+ A 
Sbjct: 273 APDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAH 332

Query: 285 DFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
                MP K ++V W +++ GC  +K+ + A  +  +M+
Sbjct: 333 KLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVISEME 371



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 163/357 (45%), Gaps = 56/357 (15%)

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           T N  I GY   G + +A R+F+ MP R+ VS+N+MI G+  +GDV +A   F+R+    
Sbjct: 48  TNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERVLAPT 107

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG-YGQRGRVEEARK 180
             + +++V+G  + G+++ A RV  +   R     DLV ++N +I G  G R  V EA  
Sbjct: 108 PVTWTSMVAGFCRAGDVESARRVFEEMPER-----DLV-SWNAMISGCVGNRLPV-EALC 160

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR--EIF--EQMLERDTFSW 236
           LF  +       EG V  +  +V   S++     AG + + +   +F  ++ L  D F  
Sbjct: 161 LFRWM-----MEEGFVPNRGTVV---SVLSACTGAGALETGKWVHVFVEKKRLRWDEFLG 212

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
             ++  Y     +E A  +F  +   +T TWNAM++G A  G    ALD F++M     V
Sbjct: 213 TALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTV 272

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQ 354
           +                              PD  TF  +L   S  G VD   G +   
Sbjct: 273 A------------------------------PDEVTFVGVLLACSHAGFVD--AGKEHFY 300

Query: 355 MVTKTVIPDVPINN--ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            + +    ++ + +   ++ + AR G + EA  +  EM +  +VV W A++GGC  H
Sbjct: 301 TIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLH 357


>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 519

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/379 (40%), Positives = 230/379 (60%), Gaps = 3/379 (0%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  N V  N++++ +AK GD+  A  +F+   + D  +W+++I+GY    D++ A  LF 
Sbjct: 139 FGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVARKLFN 198

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
           +MP  D ++WN M++GY + G +E A   F   P K++VSWN+MIAG       + A++L
Sbjct: 199 EMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALEL 258

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP--INNALITMYA 375
           F +M   G  PD  T  S+LS  + + DL  G ++H  V +  +  +   + NALI MYA
Sbjct: 259 FNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYA 318

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +CG I E+  +F  +   K+V+SWN++I G A HG   E+L LFK M+  K+ P  ITF+
Sbjct: 319 KCGNIKESLDVFWSITD-KDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFV 377

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
            VL AC+HAG ++EG ++F  M +EY IEP I H   +VD++GR G L++A   I  M  
Sbjct: 378 GVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSMKI 437

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           EP+  +W  LL AC+VH +VELA+VA E L  +  ++S  YVL+ N+YA  G WD A +V
Sbjct: 438 EPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLYASRGEWDGAEKV 497

Query: 556 RLLMKSNNIKKPTGYSWVD 574
           R LM  + + K  G S+V+
Sbjct: 498 RKLMDDSGVTKIRGSSFVE 516



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 195/460 (42%), Gaps = 99/460 (21%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGS------------GFLEEARYLFDIMPE---- 57
           A +LF ++PQ D   +NVMI G   S                F++   Y F  + +    
Sbjct: 61  AHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTR 120

Query: 58  --------------------RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM 97
                                + V  NT++  +AK G++  A  LF+     +VV+W+++
Sbjct: 121 LFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSL 180

Query: 98  ISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGED 157
           I+G+ + GD+  A + F+ MP RD  S + +++G ++ GE+                   
Sbjct: 181 IAGYARRGDLKVARKLFNEMPERDLVSWNVMITGYVKQGEM------------------- 221

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
                             E AR LFD+ PV            +++VSWN+MI  Y   G 
Sbjct: 222 ------------------ESARMLFDEAPV------------KDVVSWNAMIAGYVVCGL 251

Query: 218 VVSAREIFEQMLERDTF----SWNTMISGYIHVLDMEEASNLFVK-----MPHPDTLTWN 268
              A E+F +M     F    +  +++S    + D+E    +  K     M    TL  N
Sbjct: 252 SKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGN 311

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           A++  YA+ GN++ +LD F  +  K+++SWNS+I G   +   + ++ LF  MQ     P
Sbjct: 312 ALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICP 371

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARII 386
           +  TF  +L   S   ++  G +   +++    + P++     ++ M  R G + EA   
Sbjct: 372 NEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKF 431

Query: 387 FEEMKLLKNVVSWNAMIGGCASHG---FATEALELFKSMR 423
            + MK+  N + W  ++  C  HG    A  A E   SMR
Sbjct: 432 IDSMKIEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMR 471



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 161/325 (49%), Gaps = 32/325 (9%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           + K  ++  A  LFD+  + DVV+W+ +I+GY + RG   L+ AR LF+ MPERD V+WN
Sbjct: 153 HAKCGDLNVATSLFDDSCKGDVVAWSSLIAGY-ARRGD--LKVARKLFNEMPERDLVSWN 209

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---- 120
            +I+GY K GEME A  LF+  P ++VVSWNAMI+G++  G    A+E F+ M       
Sbjct: 210 VMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFP 269

Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           D  +L +L+S     G+L+   +V  K      G    +   N LI  Y + G ++E+  
Sbjct: 270 DEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLG-NALIDMYAKCGNIKESLD 328

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM- 239
           +F  I              ++++SWNS+I+  A  G    +  +F +M++R     N + 
Sbjct: 329 VFWSIT------------DKDVISWNSVIVGMALHGHGKESLSLF-KMMQRTKICPNEIT 375

Query: 240 ----ISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRM 290
               +    H  +++E    F  M       P+      MV    + G L+ A  F   M
Sbjct: 376 FVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSM 435

Query: 291 P-QKNLVSWNSMIAGCETNKDYEGA 314
             + N + W +++A C+ + D E A
Sbjct: 436 KIEPNAIIWRTLLAACKVHGDVELA 460



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 122/296 (41%), Gaps = 67/296 (22%)

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F ++PQ +   +N MI G   + +   AI L+ +M     K D +TF  +L   + 
Sbjct: 61  AHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTR 120

Query: 343 IVDLHLGMQIHQMVTK--------------------------------TVIPDVPINNAL 370
           +  ++ G  +H MV +                                +   DV   ++L
Sbjct: 121 LFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSL 180

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSW------------------------------- 399
           I  YAR G +  AR +F EM   +++VSW                               
Sbjct: 181 IAGYARRGDLKVARKLFNEMP-ERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSW 239

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMV 458
           NAMI G    G + +ALELF  M    V P  +T +S+LSACA  G +E G++ H K M 
Sbjct: 240 NAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVME 299

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
              G    +   A L+D+  + G +++++D+   +  + D   W +++    +H +
Sbjct: 300 ISMGKLSTLLGNA-LIDMYAKCGNIKESLDVFWSIT-DKDVISWNSVIVGMALHGH 353


>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
 gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 203/628 (32%), Positives = 312/628 (49%), Gaps = 77/628 (12%)

Query: 5   YVKRREMAKARKLFDEMPQRDV--VSWNVMISGYISSRGSGFLEEARYLF------DIMP 56
           Y    E+  AR +FDE+P   +  ++W++MI  Y S+    F E+A  L+       + P
Sbjct: 45  YASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASN---DFAEKALDLYYKMLNSGVRP 101

Query: 57  ER---------------------------------DCVTWNTVISGYAKTGEMEEALRLF 83
            +                                 D      ++  YAK GE+E A+++F
Sbjct: 102 TKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVF 161

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD--SASLSALVS---GLIQNGEL 138
           + MP R++V+WNAMISGF  +  + + I  F  M   D  S +LS +V     L + G L
Sbjct: 162 DEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGAL 221

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
            E   V   C +R     DLV     L V Y +   +  AR++FD            + F
Sbjct: 222 REGKAVHGYC-TRMGFSNDLVVKTGILDV-YAKSKCIIYARRVFD------------LDF 267

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL--- 255
           K+N V+W++MI  Y +   +  A E+F QML  D  +  T ++  + ++      +L   
Sbjct: 268 KKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGG 327

Query: 256 ------FVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
                  VK      LT  N ++S YA+ G+L  A   F  +  K+++S+NS+I GC  N
Sbjct: 328 RCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVN 387

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPIN 367
              E + +LF +M+  G +PD  T   +L+  S +  L  G   H   V      +  I 
Sbjct: 388 CRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSIC 447

Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
           NAL+ MY +CG +  A+ +F+ M   +++VSWN M+ G   HG   EAL LF SM+   V
Sbjct: 448 NALMDMYTKCGKLDVAKRVFDTMHK-RDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGV 506

Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMV-NEYGIEPRIEHFASLVDIVGRHGRLEDA 486
            P  +T +++LSAC+H+GLV+EG+Q F SM   ++ + PRI+H+  + D++ R G L++A
Sbjct: 507 NPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEA 566

Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
            D +  MPFEPD  V G LL AC  + N EL    ++  M+   E +   VLL N Y+  
Sbjct: 567 YDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKK-MQSLGETTESLVLLSNTYSAA 625

Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            RW+DA  +R++ K   + K  GYSWVD
Sbjct: 626 ERWEDAARIRMIQKKRGLLKTPGYSWVD 653



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 116/472 (24%), Positives = 192/472 (40%), Gaps = 145/472 (30%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           ++  Y K  E+  A K+FDEMP+RD+V+WN MISG+                        
Sbjct: 144 LVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSP 203

Query: 37  --------ISSRG-SGFLEEAR----YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
                     + G +G L E +    Y   +    D V    ++  YAK+  +  A R+F
Sbjct: 204 NLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVF 263

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS------GLIQNGE 137
           +    +N V+W+AMI G+++N  +  A E F +M   D+ ++   V+      G  + G+
Sbjct: 264 DLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGD 323

Query: 138 LD----------EAARVL------------VKCGSRCD--------GGEDLVRAYNTLIV 167
           L           +A  +L             K GS CD        G +D++ +YN+LI 
Sbjct: 324 LSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVI-SYNSLIT 382

Query: 168 GYGQRGRVEEARKLFDKIPVNCDR-------------------GEGNV--------RFKR 200
           G     R EE+ +LF ++  +  R                   G G+          +  
Sbjct: 383 GCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAV 442

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY-IHVLDMEEASNLFVKM 259
           N    N+++  Y K G +  A+ +F+ M +RD  SWNTM+ G+ IH L  +EA +LF  M
Sbjct: 443 NTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLG-KEALSLFNSM 501

Query: 260 P----HPDTLT-------------------------------------WNAMVSGYAQIG 278
                +PD +T                                     +N M    A+ G
Sbjct: 502 QETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAG 561

Query: 279 NLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
            L+ A DF  +MP + ++    ++++ C T K+ E   ++  +MQ  GE  +
Sbjct: 562 YLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKMQSLGETTE 613



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 7/184 (3%)

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTK---TVIPDVPINNALITMYARCGAIVEARIIFEE 389
           F S+L       +L LG  IHQ + K   T+     + N L  +YA C  +  AR +F+E
Sbjct: 2   FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVN-LTRLYASCNEVELARHVFDE 60

Query: 390 MKLLK-NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
           +   + N ++W+ MI   AS+ FA +AL+L+  M +  V PT  T+  VL ACA    ++
Sbjct: 61  IPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAID 120

Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           +G+    S VN       +    +LVD   + G LE A+ +   MP + D   W A++  
Sbjct: 121 DGKL-IHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMP-KRDMVAWNAMISG 178

Query: 509 CRVH 512
             +H
Sbjct: 179 FSLH 182


>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
 gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 165/499 (33%), Positives = 275/499 (55%), Gaps = 22/499 (4%)

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS-----ALVSGLIQNG 136
           +FN +   +   +N ++  F +N    +    F RM   + A LS      L+  +  N 
Sbjct: 60  IFNRLLNPSTFLYNILLKIFSKNSQFIDTFSLFYRMKQSEYA-LSDKYTYPLLIKVCSNE 118

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
              +   ++     RC G  D V   ++LI  YG+   +  ARK+FD+IP          
Sbjct: 119 LRLKEGEIVHGSAIRC-GVSDDVYVGSSLISFYGKCKEILSARKVFDEIP---------- 167

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF 256
             +RN+VSW +M+  YA  GD+ +A+ +FE+M ER+  SWN MISG     D+  A  +F
Sbjct: 168 --ERNVVSWTAMVAGYASVGDLENAKRVFERMPERNLPSWNAMISGLGKAGDLSGARKVF 225

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
            +M   + +++  M+ GYA++G++  A   F   P+K++V+W+++I+G   N+    A+K
Sbjct: 226 DEMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVK 285

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP--DVPINNALITMY 374
           +F +M     KPD     S++S  S + +  L   +   +++T I      +  ALI M+
Sbjct: 286 IFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMH 345

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           A+CG + +A  +F++M   ++++   ++I G + HG   EA+ELF  M    ++P  + F
Sbjct: 346 AKCGNMEKAVKLFQDMPS-RDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAF 404

Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
             +L+AC+  GL+E+G   F +M N+Y + P   H+A +VD++ R G+L  A DL+K MP
Sbjct: 405 TVILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMP 464

Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANE 554
            +P    WGALLGAC++H +VEL +  A  L+++EPE +  YVLL N+YA   +W D + 
Sbjct: 465 LKPHACAWGALLGACKLHGDVELREEVANRLLELEPEKAGSYVLLSNIYASANQWLDVSI 524

Query: 555 VRLLMKSNNIKKPTGYSWV 573
           VR  MK   I+K  G S++
Sbjct: 525 VRDEMKERGIRKIPGCSYI 543



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 59/356 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +IS Y K +E+  ARK+FDE+P+R+VVSW  M++GY S    G LE A+ +F+ MPER+ 
Sbjct: 146 LISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASV---GDLENAKRVFERMPERNL 202

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN +ISG  K G++  A ++F+ M  RNVVS+  MI G+ + GD+A+A   FD  P +
Sbjct: 203 PSWNAMISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEK 262

Query: 121 DSASLSALVSGLIQNGELDEAAR---------------VLVKCGSRCD--GGEDLVRAYN 163
           D  + SAL+SG  +N + +EA +               ++V   S C   G  DL +  +
Sbjct: 263 DVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVD 322

Query: 164 T-----------------LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
           +                 LI  + + G +E+A KLF  +P             R+++   
Sbjct: 323 SYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMP------------SRDLIPCC 370

Query: 207 SMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH- 261
           S+I   +  G  V A E+F +ML+     DT ++  +++       +E+  + F  M + 
Sbjct: 371 SLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNK 430

Query: 262 ----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYE 312
               P    +  MV   ++ G L  A D  K MP K +  +W +++  C+ + D E
Sbjct: 431 YSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKLHGDVE 486



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 185/363 (50%), Gaps = 29/363 (7%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D    +++IS Y K  E+  A ++F+ +P RNVVSW AM++G+   GD+ NA   F+RMP
Sbjct: 139 DVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENAKRVFERMP 198

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
            R+  S +A++SGL + G+L  A +V  +   R       V ++  +I GY + G +  A
Sbjct: 199 ERNLPSWNAMISGLGKAGDLSGARKVFDEMVERN------VVSFTVMIDGYAKVGDMASA 252

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTF 234
           R LFD+ P            ++++V+W+++I  Y++      A +IF +M    ++ D F
Sbjct: 253 RALFDEAP------------EKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEF 300

Query: 235 SWNTMISGYIHV--LDMEEASNLFVKMPHPDTLTWN---AMVSGYAQIGNLELALDFFKR 289
              +++S    +   D+ +  + ++     DT   +   A++  +A+ GN+E A+  F+ 
Sbjct: 301 IMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQD 360

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLH 347
           MP ++L+   S+I G   +     A++LF +M  EG  PD   F+ IL+  S  G+++  
Sbjct: 361 MPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDG 420

Query: 348 LGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
                      +V+P       ++ + +R G +  A  + + M L  +  +W A++G C 
Sbjct: 421 WHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACK 480

Query: 408 SHG 410
            HG
Sbjct: 481 LHG 483


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 195/560 (34%), Positives = 288/560 (51%), Gaps = 79/560 (14%)

Query: 73  TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGL 132
            G+++ A R+F+ +P  N   +N++I G+  + D  +A+  F RM          + SGL
Sbjct: 35  AGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRM----------ICSGL 84

Query: 133 IQNGELDEAARVLVKCGSRCD--------------GGEDLVRAYNTLIVGYGQRGRVEEA 178
             N        VL  CG +                G   LV   N LI  Y   G +  A
Sbjct: 85  SPNEF--TLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCA 142

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTF 234
           RKLFD I              + +VSWNSMI  YA  G+   A  +F +M    +E D F
Sbjct: 143 RKLFDDIT------------DKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGF 190

Query: 235 SWNTMIS-----------GYIH-----------------VLDM-------EEASNLFVKM 259
           ++  ++S            Y+H                 ++DM         A  +F + 
Sbjct: 191 TFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRT 250

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
              + ++W +M+S YAQ G++E+A   F +MP KN+VSWNSMI+       Y  A+ LF 
Sbjct: 251 QEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFN 310

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCG 378
           +M+     PD  T  SIL+  S + DL +G +IH  +++      V + N+LI MYA+CG
Sbjct: 311 KMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCG 370

Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438
            +V A  IF EM   KN+VSWN +IG  A HG   EA++LF+ M++   LP  IT   +L
Sbjct: 371 PVVTALDIFLEMPG-KNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLL 429

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           SAC+H+GLV+ G  +F  M   Y +   IEH+A +VD++GR G L +A++LI  MP +PD
Sbjct: 430 SACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPD 489

Query: 499 KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558
             VWGALLGACR+H NVE+ +   + L+++EP +   YVL+ N+Y +  RW+D  ++R L
Sbjct: 490 VVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKL 549

Query: 559 MKSNNIKKPTGYSWVDFSPC 578
           M    IKK    S ++   C
Sbjct: 550 MIDRGIKKGRAISSIEIDGC 569



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 117/416 (28%), Positives = 193/416 (46%), Gaps = 49/416 (11%)

Query: 30  NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
           N +I+ Y+     G +  AR LFD + ++  V+WN++I GYA  G  +EA  LF     R
Sbjct: 127 NALIAVYVVC---GLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLF-----R 178

Query: 90  NVVSWNAMISGFL-----------QNGDVANAIEFFDRMPGR--DSASLSALVSGLIQNG 136
            +  W     GF            ++ D+   + F   + G   D    +ALV    + G
Sbjct: 179 KMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCG 238

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            L  A  +  +        E  V ++ ++I  Y Q G +E AR++FD++P          
Sbjct: 239 NLHSAQAIFDRT------QEKNVVSWTSMISAYAQHGSIEVARQIFDQMP---------- 282

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDM--- 249
              +N+VSWNSMI CY + G    A ++F +M    +  D  +  ++++    + D+   
Sbjct: 283 --GKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMG 340

Query: 250 EEASNLFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           ++  N  +       +T +N+++  YA+ G +  ALD F  MP KNLVSWN +I     +
Sbjct: 341 KKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALH 400

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPDVPI 366
                AIKLF +MQ +G  PD  T + +LS    SG+VD+ L       V   V  ++  
Sbjct: 401 GCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEH 460

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
              ++ +  R G + EA  +   M +  +VV W A++G C  HG      ++ K +
Sbjct: 461 YACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQL 516



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 189/423 (44%), Gaps = 72/423 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           +I+ YV    +  ARKLFD++  + +VSWN MI GY      G  +EA  LF  M E   
Sbjct: 129 LIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAH---MGNWKEAFLLFRKMREWGM 185

Query: 58  ------------------------------------RDCVTWNTVISGYAKTGEMEEALR 81
                                                D +  N ++  YAK G +  A  
Sbjct: 186 EPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQA 245

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
           +F+    +NVVSW +MIS + Q+G +  A + FD+MPG++  S ++++S  ++ G+  EA
Sbjct: 246 IFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREA 305

Query: 142 ARVLVKC-GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +  K   SR    E  +    +++    Q G +   +K+ + I  N  +G   V    
Sbjct: 306 LDLFNKMRNSRVVPDEATLV---SILAACSQLGDLVMGKKIHNYILSN--KGAYGVTL-- 358

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY-IHVLDMEEASNLFVKM 259
               +NS+I  YAK G VV+A +IF +M  ++  SWN +I    +H   + EA  LF +M
Sbjct: 359 ----YNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGL-EAIKLFEEM 413

Query: 260 PH----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-----QKNLVSWNSMIAGCETNKD 310
                 PD +T   ++S  +  G +++ L +F RM       + +  +  M+        
Sbjct: 414 QADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGL 473

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNAL 370
              AI+L  +M +   KPD   + ++L    G   +H  ++I + + K ++   P +  L
Sbjct: 474 LGEAIELIGRMPM---KPDVVVWGALL----GACRIHGNVEIGKQILKQLLELEPHSGGL 526

Query: 371 ITM 373
             +
Sbjct: 527 YVL 529



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 131/261 (50%), Gaps = 8/261 (3%)

Query: 263 DTLTWNAMVSGYA--QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
           +TLT   ++S  A    G+L+ A   F ++PQ N   +NS+I G   + D   A+ LF +
Sbjct: 19  ETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRR 78

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGA 379
           M   G  P+  T   +L            + +H +  K  I   V + NALI +Y  CG 
Sbjct: 79  MICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGL 138

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
           I  AR +F+++   K +VSWN+MIGG A  G   EA  LF+ MR + + P   TF+++LS
Sbjct: 139 IHCARKLFDDIT-DKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLS 197

Query: 440 ACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
            C+ +  ++ GR  HF   +   G++  I    +LVD+  + G L  A  +      E +
Sbjct: 198 VCSQSRDLDLGRYVHF--CIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQ-EKN 254

Query: 499 KAVWGALLGACRVHNNVELAQ 519
              W +++ A   H ++E+A+
Sbjct: 255 VVSWTSMISAYAQHGSIEVAR 275


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 195/632 (30%), Positives = 318/632 (50%), Gaps = 80/632 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
           ++S +V+  ++ +A  +F +M +RD+ SWNV++ GY     +G+ +EA  L+       I
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAK---AGYFDEALNLYHRMLWVGI 191

Query: 55  MP---------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
            P                                 E D    N +I+ Y K G++  A  
Sbjct: 192 RPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARL 251

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGE 137
           +F+ MP R+ +SWNAMISG+ +N      +  F  M       D  ++++++S     G+
Sbjct: 252 VFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGD 311

Query: 138 L---DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
                E    ++K G   +     V   N+LI  +   G  +EA  +F K+         
Sbjct: 312 ERLGREVHGYVIKTGFVAE-----VSVNNSLIQMHSSVGCWDEAEMVFSKMEF------- 359

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV---LDMEE 251
                +++VSW +MI  Y K G    A E +  M           I+  +     L + +
Sbjct: 360 -----KDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLD 414

Query: 252 ASNLFVKMPHPDTLT-----WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
              +  +      LT      N+++  Y++   ++ AL+ F R+P KN++SW S+I G  
Sbjct: 415 KGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLR 474

Query: 307 TN-KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DV 364
            N + +E     F Q  +   KP+  T  S+LS  + I  L  G +IH    +T +  D 
Sbjct: 475 LNYRSFEAL--FFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDG 532

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            + NAL+ MY RCG +  A   F   +  K+V SWN ++ G A  G    A+ELF  M  
Sbjct: 533 FLPNALLDMYVRCGRMEPAWNQFNSCE--KDVASWNILLTGYAQQGKGGLAVELFHKMIE 590

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
             V P  ITF S+L AC+ +G+V +G ++F+SM +++ I P ++H+AS+VD++GR GRLE
Sbjct: 591 SDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLE 650

Query: 485 DAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
           DA + IK MP +PD A+WGALL ACR++ NVEL ++AA+ + +++ ++   Y+LL N+YA
Sbjct: 651 DAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYA 710

Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           D G+WD+   VR +M+ N +    G SWV+ +
Sbjct: 711 DSGKWDEVARVRKIMRENRLTVDPGCSWVEVA 742



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 131/455 (28%), Positives = 213/455 (46%), Gaps = 61/455 (13%)

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR----------- 143
           NA++S F++ GD+  A   F +M  RD  S + LV G  + G  DEA             
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 144 --------VLVKCGSRCD--------------GGEDLVRAYNTLIVGYGQRGRVEEARKL 181
                   VL  CG   D              G E  V   N LI  Y + G +  AR +
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF----EQMLERDTFSWN 237
           FD++P            +R+ +SWN+MI  Y +    +    +F    E  ++ D  +  
Sbjct: 253 FDRMP------------RRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMT 300

Query: 238 TMISGYIHVLDM---EEASNLFVKMPHPDTLTW-NAMVSGYAQIGNLELALDFFKRMPQK 293
           ++IS    + D     E     +K      ++  N+++  ++ +G  + A   F +M  K
Sbjct: 301 SVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK 360

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           +LVSW +MI+G E N   E A++ +  M+ EG  PD  T +S+LS  +G+  L  G+ +H
Sbjct: 361 DLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLH 420

Query: 354 QMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
           +   +T +   V + N+LI MY++C  I +A  +F  +   KNV+SW ++I G   +  +
Sbjct: 421 EFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP-NKNVISWTSIILGLRLNYRS 479

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFA 471
            EAL  F+ M    + P  +T +SVLSACA  G +  G++ H  ++    G +  + +  
Sbjct: 480 FEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPN-- 536

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +L+D+  R GR+E A +       E D A W  LL
Sbjct: 537 ALLDMYVRCGRMEPAWNQFNSC--EKDVASWNILL 569



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 134/269 (49%), Gaps = 7/269 (2%)

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           NA++S + + G+L  A   F +M +++L SWN ++ G      ++ A+ L+ +M   G +
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARII 386
           PD +TF  +L    G+ DL  G ++H  V +     DV + NALITMY +CG I  AR++
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+ M   ++ +SWNAMI G   +    E L LF  MR F V P  +T  SV+SAC   G 
Sbjct: 253 FDRMP-RRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGD 311

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
              GR+     V + G    +    SL+ +    G  ++A  +   M F+ D   W A++
Sbjct: 312 ERLGRE-VHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK-DLVSWTAMI 369

Query: 507 GACRVHNNVELAQVAAEALMKVEPENSTP 535
                +    L + A E    +E E   P
Sbjct: 370 SG---YEKNGLPEKAVETYTIMEHEGVVP 395



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 6/210 (2%)

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           NS+I       D E A+     MQ      +  T+ ++L +         G ++H  V+K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 359 TVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
           TV    V + NAL++M+ R G +VEA  +F +M   +++ SWN ++GG A  G+  EAL 
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMA-ERDLFSWNVLVGGYAKAGYFDEALN 181

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDI 476
           L+  M    + P   TF  VL  C     +  GR+ H    V  YG E  ++   +L+ +
Sbjct: 182 LYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLH--VIRYGFESDVDVVNALITM 239

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             + G +  A  +   MP   D+  W A++
Sbjct: 240 YVKCGDIFSARLVFDRMP-RRDRISWNAMI 268


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 189/634 (29%), Positives = 311/634 (49%), Gaps = 75/634 (11%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG--------------------- 43
           ++    +++A  LFD++P  DV ++N +I  Y SS  +                      
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 44  ---FLEEA--------------RYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSM 86
              F  +A              R+      + D      ++  Y K   + +A  +F +M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR------DSASLSALVSGLIQNGELDE 140
           PAR++V+WNAM++G+  +G   +A+     M  +      ++++L AL+  L Q G L +
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 141 AARVLVKCGSRC--------DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
              V   C   C            D V     L+  Y + G +  AR++FD +P      
Sbjct: 247 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPA----- 301

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD-TFSWNTMISGYI------- 244
                  RN V+W+++I  +     +  A  +F+ ML +   F   T I+  +       
Sbjct: 302 -------RNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLD 354

Query: 245 HVLDMEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
           H+   E+   L  K   H D    N+++S YA+ G ++ A+  F  M  K+ VS++++++
Sbjct: 355 HLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVS 414

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIP 362
           G   N   E A  +F +MQ    +PD  T  S++   S +  L  G   H  ++ + +  
Sbjct: 415 GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLAS 474

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           +  I NALI MYA+CG I  +R +F  M   +++VSWN MI G   HG   EA  LF  M
Sbjct: 475 ETSICNALIDMYAKCGRIDLSRQVFNMMPS-RDIVSWNTMIAGYGIHGLGKEATALFLEM 533

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
            +    P  +TFI +LSAC+H+GLV EG+  F  M + YG+ PR+EH+  +VD++ R G 
Sbjct: 534 NNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGF 593

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           L++A + I+ MP   D  VW ALLGACRV+ N++L +  +  + ++ PE +  +VLL N+
Sbjct: 594 LDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNI 653

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           Y+  GR+D+A EVR++ K    KK  G SW++ +
Sbjct: 654 YSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 687



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 167/389 (42%), Gaps = 87/389 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI-SSRGSGFLEEARYLFDIMPER- 58
           ++  Y K   +  AR++FD MP R+ V+W+ +I G++  SR    + +A  LF  M  + 
Sbjct: 279 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSR----MTQAFLLFKAMLAQG 334

Query: 59  ---------------------------------------DCVTWNTVISGYAKTGEMEEA 79
                                                  D    N+++S YAK G +++A
Sbjct: 335 LCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQN 135
           + LF+ M  ++ VS++A++SG++QNG    A   F +M       D+A++ +L+      
Sbjct: 395 IALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 454

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAY-------NTLIVGYGQRGRVEEARKLFDKIPVN 188
             L            RC  G  ++R         N LI  Y + GR++ +R++F+ +P  
Sbjct: 455 AALQHG---------RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMP-- 503

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYI 244
                      R+IVSWN+MI  Y   G    A  +F +M       D  ++  ++S   
Sbjct: 504 ----------SRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 553

Query: 245 HVLDMEEASNLFVKMPHPDTLT-----WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSW 298
           H   + E  + F  M H   LT     +  MV   ++ G L+ A +F + MP + ++  W
Sbjct: 554 HSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVW 613

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
            +++  C   K+ +   K+   +Q  G +
Sbjct: 614 VALLGACRVYKNIDLGKKVSRMIQELGPE 642


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 186/583 (31%), Positives = 298/583 (51%), Gaps = 82/583 (14%)

Query: 32  MISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNV 91
           +++ Y +    G +  AR LFD +P+ D   +N++I  Y  +   +EAL L   M  R  
Sbjct: 47  ILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRR-- 104

Query: 92  VSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSR 151
                   G L N       EF      +  A + A    ++ +G       V+VK G  
Sbjct: 105 --------GILPN-------EFTLPFLLKACARVQAWEHVMVTHG-------VVVKLGFV 142

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
              G+  V   N L+  Y   G + ++R+ FD++              RN+VSWNSMI  
Sbjct: 143 ---GQVFVG--NALLHSYASAGSLGDSRRFFDEM------------VDRNVVSWNSMING 185

Query: 212 YAKAGDVVSAREIFEQM----LERDTFSW------------------------------- 236
           YA+AG+   A  +FE M    L  D F+                                
Sbjct: 186 YAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRID 245

Query: 237 ----NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
               N ++  Y    D+  A   F  MP  + ++W +M+   A+  +++ A D+F+++P+
Sbjct: 246 LILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPE 305

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K+++SWN+MI+       +  A+ L+ +M++ G  PD  T +++LS    + DL  G  I
Sbjct: 306 KSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMI 365

Query: 353 HQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H  +      P V + N+L+ MYARCG +  A  +F EM   KNV+SWNA+IG  A HG 
Sbjct: 366 HDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPS-KNVISWNAIIGALAMHGR 424

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
           A +AL  F+SM      P  ITF+++LSAC H GL+E G+ +F++M + Y ++P +EH+A
Sbjct: 425 AQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYA 484

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            +VD++GR G+L  A+DLIK MP  PD  VWGALLGACR+H ++++ +   + L+++E  
Sbjct: 485 CMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGM 544

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +   +VL+ NM  +  +W+D   +R LM+   +KK  G S ++
Sbjct: 545 SGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIE 587



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 205/496 (41%), Gaps = 107/496 (21%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCV------------ 61
           AR+LFD +P  D   +N +I  Y +S      +EA  L   M  R  +            
Sbjct: 63  ARQLFDRIPDPDRFVYNSLIRAYCNSHCP---QEALPLLRGMIRRGILPNEFTLPFLLKA 119

Query: 62  -----TW----------------------NTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
                 W                      N ++  YA  G + ++ R F+ M  RNVVSW
Sbjct: 120 CARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSW 179

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LVK 147
           N+MI+G+ Q G+   A   F+ M  +    D  +L +L+      G L+    V   L+ 
Sbjct: 180 NSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLV 239

Query: 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207
            G R     DL+ A N L+  YG+ G +  A   FD +P             +N VSW S
Sbjct: 240 RGCRI----DLILA-NALVDMYGKCGDLLMAHTCFDMMPF------------KNAVSWTS 282

Query: 208 MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPD 263
           M+   AK   + +AR+ FEQ+ E+   SWN MIS Y+      EA +L+ +M      PD
Sbjct: 283 MLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPD 342

Query: 264 TLT-----------------------------------WNAMVSGYAQIGNLELALDFFK 288
             T                                   +N+++  YA+ G ++ A+  F 
Sbjct: 343 EFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFS 402

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            MP KN++SWN++I     +   + A+  F  M  +   PD  TF ++LS  +    L  
Sbjct: 403 EMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEA 462

Query: 349 GMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           G    Q +     V P V     ++ +  R G + +A  + ++M +  +VV W A++G C
Sbjct: 463 GQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGAC 522

Query: 407 ASHGFATEALELFKSM 422
             HG      ++ K +
Sbjct: 523 RIHGHIQIGKQVIKQL 538



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 162/405 (40%), Gaps = 92/405 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           ++  Y     +  +R+ FDEM  R+VVSWN MI+GY                        
Sbjct: 151 LLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLAD 210

Query: 37  --------ISSRGSGFLEEARYLFDIMPERDC----VTWNTVISGYAKTGEMEEALRLFN 84
                    +    G LE  + +   +  R C    +  N ++  Y K G++  A   F+
Sbjct: 211 EFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFD 270

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA--- 141
            MP +N VSW +M+    +   +  A ++F+++P +   S +A++S  +Q G   EA   
Sbjct: 271 MMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDL 330

Query: 142 ----------------ARVLVKCGSRCDGG-----EDLVR---------AYNTLIVGYGQ 171
                           A VL  CG   D        D +R          +N+L+  Y +
Sbjct: 331 YNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYAR 390

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML-- 229
            G+V+ A  LF ++P             +N++SWN++I   A  G    A   F  M+  
Sbjct: 391 CGQVDTAISLFSEMP------------SKNVISWNAIIGALAMHGRAQDALMFFRSMVFD 438

Query: 230 --ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLEL 282
               D  ++  ++S   H   +E     F  M H     P    +  MV    + G L  
Sbjct: 439 AFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAK 498

Query: 283 ALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQ-MQVEG 325
           A+D  K MP + ++V W +++  C  +   +   ++  Q +++EG
Sbjct: 499 AVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEG 543


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 177/536 (33%), Positives = 289/536 (53%), Gaps = 45/536 (8%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA-- 123
           +++ YAK G ME+A R+F +MP RNVV+W  ++ GF+QN    +AI  F  M    S   
Sbjct: 105 LVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPS 164

Query: 124 --SLSALVSGL--IQNGEL-DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
             +LSA++     +Q+ +L D+    ++K     D    +  A  +L   Y + GR+E+A
Sbjct: 165 IYTLSAVLHACSSLQSLKLGDQFHAYIIK--YHLDFDTSVGSALCSL---YSKCGRLEDA 219

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----F 234
            K F +I             ++N++SW S +      G  V    +F +M+  D     F
Sbjct: 220 LKAFSRIR------------EKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEF 267

Query: 235 SWNTMISGYIHVLDME---EASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRM 290
           +  + +S    +  +E   +  +L +K  +   L   N+++  Y + G +  A  FF RM
Sbjct: 268 TLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRM 327

Query: 291 PQKNLVSWNSMIAG----CETNKDY-------EGAIKLFIQMQVEGEKPDRHTFSSILSM 339
              ++V+WN+MIAG     E  KD          A+K+F ++   G KPD  T SS+LS+
Sbjct: 328 DDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSV 387

Query: 340 SSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
            S ++ +  G QIH    KT  + DV ++ +LI+MY +CG+I  A   F EM   + +++
Sbjct: 388 CSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMST-RTMIA 446

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           W +MI G + HG + +AL +F+ M    V P  +TF+ VLSAC+HAG+V +   +F+ M 
Sbjct: 447 WTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFEIMQ 506

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            +Y I+P ++H+  +VD+  R GRLE A++ IK M +EP + +W   +  CR H N+EL 
Sbjct: 507 KKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGNLELG 566

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             A+E L+ ++P++   YVLL NMY    R+DD + VR +M+   + K   +SW+ 
Sbjct: 567 FYASEQLLSLKPKDPETYVLLLNMYLSADRFDDVSRVRKMMEVEKVGKLKDWSWIS 622



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 197/462 (42%), Gaps = 93/462 (20%)

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM- 259
           N    + ++  YAK G++  AR +FE M  R+  +W T++ G++     + A ++F +M 
Sbjct: 98  NFFVMSFLVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEML 157

Query: 260 ---PHP-----------------------------------DTLTWNAMVSGYAQIGNLE 281
               +P                                   DT   +A+ S Y++ G LE
Sbjct: 158 YAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLE 217

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            AL  F R+ +KN++SW S ++ C  N      ++LF++M  E  KP+  T +S LS   
Sbjct: 218 DALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCC 277

Query: 342 GIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            I  L LG Q+  +  K     ++ + N+L+ +Y + G IVEA   F  M  + ++V+WN
Sbjct: 278 EIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDV-SMVTWN 336

Query: 401 AMIGGCA-----------SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           AMI G A           +    +EAL++F  +    + P   T  SVLS C+    +E+
Sbjct: 337 AMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQ 396

Query: 450 GRQ------------------HFKSMVNEYG-IEPRIEHF-----------ASLVDIVGR 479
           G Q                     SM N+ G IE   + F            S++    +
Sbjct: 397 GEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQ 456

Query: 480 HGRLEDAMDLIKGMPF---EPDKAVWGALLGACRVHNNVELAQVAAEALM---KVEPENS 533
           HG  + A+ + + M      P+   +  +L AC     V  A    E +    K++P   
Sbjct: 457 HGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMD 516

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
             Y  + +M+  +GR + A  +  + K N   +P+ + W +F
Sbjct: 517 H-YECMVDMFVRLGRLEQA--LNFIKKMN--YEPSEFIWSNF 553



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/484 (22%), Positives = 212/484 (43%), Gaps = 83/484 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           +++ Y K   M  AR++F+ MP+R+VV+W  ++ G++ +                     
Sbjct: 105 LVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPS 164

Query: 40  --------RGSGFLEEAR-------YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
                        L+  +       Y+     + D    + + S Y+K G +E+AL+ F+
Sbjct: 165 IYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFS 224

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNGELDE 140
            +  +NV+SW + +S    NG     +  F  M   D      +L++ +S   +   L+ 
Sbjct: 225 RIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLEL 284

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +V   C     G E  +R  N+L+  Y + G + EA + F+++               
Sbjct: 285 GTQVCSLCIKF--GYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMD------------DV 330

Query: 201 NIVSWNSMIMCYAKAGDVVS-----------AREIFEQM----LERDTFSWNTMISGYIH 245
           ++V+WN+MI  +A+  ++             A +IF ++    ++ D F+ ++++S    
Sbjct: 331 SMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSR 390

Query: 246 VLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           +L +E+   +  +        D +   +++S Y + G++E A   F  M  + +++W SM
Sbjct: 391 MLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSM 450

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLG-MQIHQMVTK 358
           I G   +   + A+ +F  M + G +P+  TF  +LS  S  G+V   L   +I Q   K
Sbjct: 451 ITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKKYK 510

Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG------FA 412
            + P +     ++ M+ R G + +A    ++M    +   W+  I GC SHG      +A
Sbjct: 511 -IKPVMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGNLELGFYA 569

Query: 413 TEAL 416
           +E L
Sbjct: 570 SEQL 573



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 147/308 (47%), Gaps = 20/308 (6%)

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           + +Q L++ ++S   ++ G  HV+      N FV          + +V+ YA+ GN+E A
Sbjct: 70  LLQQCLDKRSYSGTQIVHG--HVMKTGCHDNFFV---------MSFLVNVYAKCGNMEDA 118

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F+ MP++N+V+W +++ G   N   + AI +F +M   G  P  +T S++L   S +
Sbjct: 119 RRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSL 178

Query: 344 VDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             L LG Q H  + K  +  D  + +AL ++Y++CG + +A   F  ++  KNV+SW + 
Sbjct: 179 QSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIR-EKNVISWTSA 237

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           +  C  +G   + L LF  M S  + P   T  S LS C     +E G Q   S+  ++G
Sbjct: 238 VSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQ-VCSLCIKFG 296

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR-----VHNNVEL 517
            E  +    SL+ +  + G + +A      M  +     W A++           +N+  
Sbjct: 297 YESNLRVRNSLLYLYLKSGFIVEAHRFFNRMD-DVSMVTWNAMIAGHAQMMELTKDNLSA 355

Query: 518 AQVAAEAL 525
            Q  +EAL
Sbjct: 356 CQRGSEAL 363


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 196/702 (27%), Positives = 318/702 (45%), Gaps = 144/702 (20%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD-------------- 59
           +R +FD M  ++++ WN ++SGY  +R   + +  +   D++ + D              
Sbjct: 98  SRLVFDNMETKNLIQWNALVSGY--TRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKA 155

Query: 60  -------------------------CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
                                        N ++  Y K G ++EA+++F+ MP  N+VSW
Sbjct: 156 CGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSW 215

Query: 95  NAMISGFLQNG--------------------DVANAIEFFDRMPGRDSASLSALVSGLIQ 134
           N+MI  F +NG                    DV   +       G     +   + GL  
Sbjct: 216 NSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAV 275

Query: 135 NGELDEAARV-------LVKCGSRCDGGEDLVR-------AYNTLIVGYGQRGRVEEARK 180
              L E   V         KCG   +     V+       ++NT+I  +   G V EA  
Sbjct: 276 KLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFN 335

Query: 181 LFDKIPVNCDRGEGN----------------VRFKRNIVSW------------NSMIMCY 212
           L  ++ +  +  + N                +R  + +  +            N+ I+ Y
Sbjct: 336 LLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILAY 395

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWN 268
           AK G + SA ++F  + ++   SWN +I G+    D  +A +L  +M +    PD  T +
Sbjct: 396 AKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTIS 455

Query: 269 AMVSGYAQIGNLE-------------LALDFF----------------------KRMPQK 293
           +++   A + +L+             L  DFF                       RM  K
Sbjct: 456 SLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDK 515

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
           NLVSWN+MI+G   N     ++ LF +   EG +       S+    S +  L LG + H
Sbjct: 516 NLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAH 575

Query: 354 QMVTKTV-IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
             V K +   D  +  ++I MYA+ G I E+R +F+ +K  KNV SWNA+I     HG  
Sbjct: 576 GYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKD-KNVASWNAIIVAHGIHGHG 634

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
            EA+EL++ M+    +P   T+I +L AC HAGLVEEG ++FK M N   IEP++EH+A 
Sbjct: 635 KEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYAC 694

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           L+D++ R GRL+DA+ L+  MP E D  +W +LL +CR    +E+ +  A+ L+++EP+ 
Sbjct: 695 LIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDK 754

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +  YVLL N+YA +G+WD    VR +MK   ++K  G SW++
Sbjct: 755 AENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIE 796



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/426 (28%), Positives = 203/426 (47%), Gaps = 42/426 (9%)

Query: 49  RYLFDIMPERDCVTWNT-VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDV 107
           +++ D    R+    NT +I  YA  G   ++  +F++M  +N++ WNA++SG+ +NG  
Sbjct: 67  KFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLY 126

Query: 108 ANAIEFF-------DRMPGRDSASLSALVS--GLIQNGELDEAAR-VLVKCGSRCDGGED 157
            + ++ F       D  P  D+ +  +++   G I +  L E    +++K G   D    
Sbjct: 127 GDVVKVFMDLVSDTDFQP--DNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLD---- 180

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
            V   N L+  YG+ G V+EA K+FD +P            + N+VSWNSMI  +++ G 
Sbjct: 181 -VFVGNALVGMYGKCGAVDEAMKVFDFMP------------ETNLVSWNSMICAFSENGF 227

Query: 218 VVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEAS--------NLFVKMP-HPDTLTWN 268
              + ++  +ML  +    + +    I  +   E           L VK+    + +  N
Sbjct: 228 SRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNN 287

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-- 326
           AMV  Y++ G L  A   F +   KN+VSWN+MI+      D   A  L  +MQ++GE  
Sbjct: 288 AMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEM 347

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARII 386
           K +  T  ++L      + L    ++H    +     V ++NA I  YA+CGA+  A  +
Sbjct: 348 KANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKV 407

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F  +   K V SWNA+IGG A +G   +AL L   M      P + T  S+L ACAH   
Sbjct: 408 FHGIG-DKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKS 466

Query: 447 VEEGRQ 452
           ++ G++
Sbjct: 467 LQYGKE 472



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 150/362 (41%), Gaps = 76/362 (20%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------- 36
           I  Y K   +  A K+F  +  + V SWN +I G+                         
Sbjct: 392 ILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDW 451

Query: 37  --ISSR--GSGFLEEARYLFDIMP-------ERDCVTWNTVISGYAKTGEMEEALRLFNS 85
             ISS       L+  +Y  +I         E D     +++S Y   G+   A  LF+ 
Sbjct: 452 FTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDR 511

Query: 86  MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS-ALVSGLIQNGELDEAARV 144
           M  +N+VSWNAMISG+ QNG    ++  F +       S   A+VS      +L      
Sbjct: 512 MKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSA---- 567

Query: 145 LVKCGSRCDGGEDLVRAYNT--------LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            ++ G    G   +++A  T        +I  Y + G ++E+RK+FD +           
Sbjct: 568 -LRLGKEAHG--YVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLK---------- 614

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTMISGYIHVLDMEEA 252
              +N+ SWN++I+ +   G    A E++E+M +     D F++  ++    H   +EE 
Sbjct: 615 --DKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEG 672

Query: 253 SNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK--NLVSWNSMIAGC 305
              F +M +     P    +  ++   A+ G L+ AL     MP++  N + W+S++  C
Sbjct: 673 LKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRI-WSSLLRSC 731

Query: 306 ET 307
            T
Sbjct: 732 RT 733


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 195/632 (30%), Positives = 318/632 (50%), Gaps = 80/632 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
           ++S +V+  ++ +A  +F +M +RD+ SWNV++ GY     +G+ +EA  L+       I
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAK---AGYFDEALNLYHRMLWVGI 191

Query: 55  MP---------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
            P                                 E D    N +I+ Y K G++  A  
Sbjct: 192 RPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARL 251

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGE 137
           +F+ MP R+ +SWNAMISG+ +N      +  F  M       D  ++++++S     G+
Sbjct: 252 VFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGD 311

Query: 138 L---DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
                E    ++K G   +     V   N+LI  +   G  +EA  +F K+         
Sbjct: 312 ERLGREVHGYVIKTGFVAE-----VSVNNSLIQMHSSVGCWDEAEMVFSKMEF------- 359

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV---LDMEE 251
                +++VSW +MI  Y K G    A E +  M           I+  +     L + +
Sbjct: 360 -----KDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLD 414

Query: 252 ASNLFVKMPHPDTLT-----WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
              +  +      LT      N+++  Y++   ++ AL+ F R+P KN++SW S+I G  
Sbjct: 415 KGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLR 474

Query: 307 TN-KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DV 364
            N + +E     F Q  +   KP+  T  S+LS  + I  L  G +IH    +T +  D 
Sbjct: 475 LNYRSFEAL--FFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDG 532

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            + NAL+ MY RCG +  A   F   +  K+V SWN ++ G A  G    A+ELF  M  
Sbjct: 533 FLPNALLDMYVRCGRMEPAWNQFNSCE--KDVASWNILLTGYAQQGKGGLAVELFHKMIE 590

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
             V P  ITF S+L AC+ +G+V +G ++F+SM +++ I P ++H+AS+VD++GR GRLE
Sbjct: 591 SDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLE 650

Query: 485 DAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
           DA + IK MP +PD A+WGALL ACR++ NVEL ++AA+ + +++ ++   Y+LL N+YA
Sbjct: 651 DAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYA 710

Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
           D G+WD+   VR +M+ N +    G SWV+ +
Sbjct: 711 DSGKWDEVARVRKIMRENRLTVDPGCSWVEVA 742



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 213/456 (46%), Gaps = 63/456 (13%)

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV---LVKCGSR 151
           NA++S F++ GD+  A   F +M  RD  S + LV G  + G  DEA  +   ++  G R
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
            D     V  +  ++   G    +   R++   +            F+ ++   N++I  
Sbjct: 193 PD-----VYTFPCVLRTCGGLPDLARGREVHLHVI--------RYGFESDVDVVNALITM 239

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW 267
           Y K GD+ SAR +F++M  RD  SWN MISGY       E   LF  M      PD +T 
Sbjct: 240 YVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTM 299

Query: 268 NAMVSGYAQIGNLELALD-----------------------------------FFKRMPQ 292
            +++S    +G+  L  +                                    F +M  
Sbjct: 300 TSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEF 359

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K+LVSW +MI+G E N   E A++ +  M+ EG  PD  T +S+LS  +G+  L  G+ +
Sbjct: 360 KDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIML 419

Query: 353 HQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H+   +T +   V + N+LI MY++C  I +A  +F  +   KNV+SW ++I G   +  
Sbjct: 420 HEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP-NKNVISWTSIILGLRLNYR 478

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHF 470
           + EAL  F+ M    + P  +T +SVLSACA  G +  G++ H  ++    G +  + + 
Sbjct: 479 SFEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPN- 536

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            +L+D+  R GR+E A +       E D A W  LL
Sbjct: 537 -ALLDMYVRCGRMEPAWNQFNSC--EKDVASWNILL 569



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 134/269 (49%), Gaps = 7/269 (2%)

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           NA++S + + G+L  A   F +M +++L SWN ++ G      ++ A+ L+ +M   G +
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARII 386
           PD +TF  +L    G+ DL  G ++H  V +     DV + NALITMY +CG I  AR++
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+ M   ++ +SWNAMI G   +    E L LF  MR F V P  +T  SV+SAC   G 
Sbjct: 253 FDRMP-RRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGD 311

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
              GR+     V + G    +    SL+ +    G  ++A  +   M F+ D   W A++
Sbjct: 312 ERLGRE-VHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK-DLVSWTAMI 369

Query: 507 GACRVHNNVELAQVAAEALMKVEPENSTP 535
                +    L + A E    +E E   P
Sbjct: 370 SG---YEKNGLPEKAVETYTIMEHEGVVP 395



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 6/210 (2%)

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           NS+I       D E A+     MQ      +  T+ ++L +         G ++H  V+K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 359 TVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
           TV    V + NAL++M+ R G +VEA  +F +M   +++ SWN ++GG A  G+  EAL 
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMA-ERDLFSWNVLVGGYAKAGYFDEALN 181

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDI 476
           L+  M    + P   TF  VL  C     +  GR+ H    V  YG E  ++   +L+ +
Sbjct: 182 LYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLH--VIRYGFESDVDVVNALITM 239

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             + G +  A  +   MP   D+  W A++
Sbjct: 240 YVKCGDIFSARLVFDRMP-RRDRISWNAMI 268


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 188/628 (29%), Positives = 315/628 (50%), Gaps = 76/628 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           +++ Y K   +  ARK+FD MP R V +WN MIS Y  S  SG   EA ++F  M     
Sbjct: 201 LVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSG---EAFFIFQRMQQEGE 257

Query: 57  -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                                              E D      +I+ YA+    E+A +
Sbjct: 258 RCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQ 317

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVSGLIQN 135
           +F  M   N+++W+A+I+ F  +G    A+ +F  M      P R   +  +L++G    
Sbjct: 318 VFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNR--VTFISLLNGFTTP 375

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
             L+E +R+ +       G +D     N L+  YG+    ++AR +FD++ +        
Sbjct: 376 SGLEELSRIHLLITEH--GLDDTTTMRNALVNVYGRCESPDDARTVFDQLELP------- 426

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIF----EQMLERDTFSWNTMISGYIHVLDMEE 251
                N++SWNSMI  Y +      A ++F    +Q ++ D  ++ T++ G   +     
Sbjct: 427 -----NLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTIL-GACTIGSHGR 480

Query: 252 ASNLFVKMPHPD-----TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
              L  +           L   ++V+ YA+ G L++A    + M ++ + +WN +I G  
Sbjct: 481 TRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYA 540

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVP 365
            +     A++ + ++Q+E    D+ TF S+L+  +    L  G  IH    +  +  DV 
Sbjct: 541 LHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVI 600

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           + NAL  MY++CG++  AR IF+ M + ++ VSWN M+   A HG + E L+L + M   
Sbjct: 601 VKNALTNMYSKCGSMENARRIFDSMPI-RSAVSWNGMLQAYAQHGESEEVLKLIRKMEQE 659

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            V    ITF+SVLS+C+HAGL+ EG Q+F S+ ++ GIE + EH+  LVD++GR G+L++
Sbjct: 660 GVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQE 719

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A   I  MP EP    W +LLGACRV  +++  ++AA  L++++P NS+  V+L N+Y++
Sbjct: 720 AEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSE 779

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            G W +A ++R  M S  +KK  G S +
Sbjct: 780 RGDWKNAAKLRRAMASRRVKKVPGISSI 807



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 157/571 (27%), Positives = 251/571 (43%), Gaps = 119/571 (20%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           Y++ G + +A+  F  + ARNVVSWN MIS +        A+  F  M          L+
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAM----------LL 51

Query: 130 SGLIQNGELDEAARVLVKCGS---RCDG----GEDLVRAY--NTLIVG-----YGQRGRV 175
            G+  N     A  VL  CGS     DG       L R +  NTL+       YG+ G +
Sbjct: 52  EGVAPNAITLVA--VLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTL 109

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQML----E 230
            +A+ +F+++             ++N+V+WN+M+  Y+  G     A E+F +ML    +
Sbjct: 110 LDAQSVFEEMA------------EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVK 157

Query: 231 RDTFSWNTMISG-----------YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279
            +  ++  +++            +IH    E   +L       D     A+V+ Y + G+
Sbjct: 158 ANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSL-------DVFVNTALVNTYTKCGS 210

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           L  A   F  MP +++ +WNSMI+    ++    A  +F +MQ EGE+ DR TF SIL  
Sbjct: 211 LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDA 270

Query: 340 SSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
                 L  G  + + +++T    D+ +  ALITMYARC +  +A  +F  MK   N+++
Sbjct: 271 CVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMK-QTNLIT 329

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA-CAHAGLVEEGRQHFKSM 457
           W+A+I   A HG   EAL  F+ M+   +LP  +TFIS+L+     +GL E  R H   +
Sbjct: 330 WSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHL--L 387

Query: 458 VNEYGIEPRIEHFASLVDIVGR-------------------------------HGRLEDA 486
           + E+G++       +LV++ GR                                 R +DA
Sbjct: 388 ITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDA 447

Query: 487 MDLIKGMP---FEPDKAVWGALLGACR----------VHNNVELAQVAAEALMKVEPENS 533
           + L + M     +PD+  +  +LGAC           VH  VE + +    L++      
Sbjct: 448 LQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTS---- 503

Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
                L NMYA  G  D A  +   M    I
Sbjct: 504 -----LVNMYAKAGELDVAEVILQEMDEQQI 529



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MY+RCG++ +A   F +++  +NVVSWN MI   +S+    EAL LF +M    V P  I
Sbjct: 1   MYSRCGSLGDAVAAFGKIR-ARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAI 59

Query: 433 TFISVLSACAHAGLVEEG-RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           T ++VL++C     + +G   H  S+  E G         +L+++ G+ G L DA  + +
Sbjct: 60  TLVAVLNSCGSFRELRDGILVHALSL--ERGFFQNTLVATALLNMYGKCGTLLDAQSVFE 117

Query: 492 GMPFEPDKAVWGALLG 507
            M  E +   W A+LG
Sbjct: 118 EMA-EKNVVTWNAMLG 132


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 172/554 (31%), Positives = 283/554 (51%), Gaps = 32/554 (5%)

Query: 38  SSRGS---GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
           S+RGS   G ++    L  +    D +  N +I  YAK G++  A  +F+ MP RNVVSW
Sbjct: 14  SARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSW 73

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQ--NGELDEAARVLVKCGSRC 152
            A++ GFL +G+    +  F  M G  ++     +S  ++   G      ++   C    
Sbjct: 74  TALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGTRAGVQIHGVCVRTG 133

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
             G D+V   N+L+V Y +     +AR++FD IP             RN+ +WNSMI  Y
Sbjct: 134 FEGHDVV--ANSLVVMYSKGRWTGDARRVFDVIP------------SRNLATWNSMISGY 179

Query: 213 AKAGDVVSAREIFEQMLER-----DTFSWNTMISGYIHVLDMEEASNLFVKM------PH 261
           A AG    +  +F +M  R     D F++ +++     +    E + +   M      P 
Sbjct: 180 AHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPA 239

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            + +   A++  Y +   L +A+  F  + ++N + W ++I G       + A+ LF + 
Sbjct: 240 SNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRF 299

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAI 380
              G + D H  SS++++ +    +  G Q+H    KT    DV + N+L+ MY +CG  
Sbjct: 300 WSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLT 359

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
            EA   F EM   +NVVSW AMI G   HG   EA++LF+ M+   V    + ++++LSA
Sbjct: 360 GEAGRRFREMPA-RNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSA 418

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C+H+GLV+E R++F  +  +  + P+ EH+A +VD++GR G L +A +LI  MP EP   
Sbjct: 419 CSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVG 478

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
           VW  LL ACRVH +V + +   + L+ V+ +N   YV+L N+ A+ G W +   +R  M+
Sbjct: 479 VWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMR 538

Query: 561 SNNIKKPTGYSWVD 574
              ++K  G SW +
Sbjct: 539 RKGLRKQGGCSWTE 552



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 194/463 (41%), Gaps = 71/463 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSGFLEE 47
           +I  Y K  ++  A ++FD MP+R+VVSW  ++ G++               RGSG    
Sbjct: 45  LIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPN 104

Query: 48  ARYLFDIMP---------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSM 86
              L   +                      E   V  N+++  Y+K     +A R+F+ +
Sbjct: 105 EFTLSATLKACGGGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVI 164

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELDEA 141
           P+RN+ +WN+MISG+   G   +++  F  M  R     D  + ++L+      G   E 
Sbjct: 165 PSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREG 224

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVG-----YGQRGRVEEARKLFDKIPVNCDRGEGNV 196
           A+V      R      +  A N ++ G     Y +  R+  A ++FD +           
Sbjct: 225 AQVHAAMAVR-----GVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLE---------- 269

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA 252
             +RN + W ++I+ +A+ G V  A  +F +     +  D    +++++ +     +E+ 
Sbjct: 270 --RRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQG 327

Query: 253 SNLF---VKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             +     K P   D    N++V  Y + G    A   F+ MP +N+VSW +MI G   +
Sbjct: 328 KQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKH 387

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPDVPI 366
                AI LF +MQ EG + D   + ++LS    SG+VD            + + P    
Sbjct: 388 GHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEH 447

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
              ++ +  R G + EA+ +   M +   V  W  ++  C  H
Sbjct: 448 YACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVH 490



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 162/372 (43%), Gaps = 56/372 (15%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-----D 59
           Y K R    AR++FD +P R++ +WN MISGY  + G G   ++  +F  M  R     D
Sbjct: 148 YSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHA-GQG--RDSLLVFREMQRRHDEQPD 204

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSM------PARNVVSWNAMISGFLQNGDVANAIEF 113
             T+ +++   +  G   E  ++  +M      PA N +   A++  +++   +  A++ 
Sbjct: 205 EFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQV 264

Query: 114 FDRMPGRDSASLSALVSGLIQNGELDEAA---RVLVKCGSRCDGGEDLVRAYNTLIVGYG 170
           FD +  R++   + ++ G  Q G++ EA    R     G R DG        ++++  + 
Sbjct: 265 FDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADG-----HVLSSVVAVFA 319

Query: 171 QRGRVEEARKLF---DKIPVNCD----------------RGEGNVRFK----RNIVSWNS 207
               VE+ +++     K P   D                 GE   RF+    RN+VSW +
Sbjct: 320 DFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTA 379

Query: 208 MIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-- 261
           MI    K G    A ++FE+M    +E D  ++  ++S   H   ++E    F ++    
Sbjct: 380 MINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDR 439

Query: 262 ---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYEGAIKL 317
              P    +  MV    + G L  A +    MP +  V  W ++++ C  +KD     ++
Sbjct: 440 RMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREV 499

Query: 318 F-IQMQVEGEKP 328
             + + V+G+ P
Sbjct: 500 GDVLLAVDGDNP 511


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 195/583 (33%), Positives = 293/583 (50%), Gaps = 77/583 (13%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP--ARNVVSWNAMISGFL 102
           L+   YL  +    D  +   ++  Y K G    A ++F+ MP  + +VVSW A+IS + 
Sbjct: 72  LQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYS 131

Query: 103 QNGDVANAIEFFDRM-----------PGRDSASLSALVSGLIQNGELDEAARVLVKCGSR 151
            NG V  A + F RM            G D  SL ALVS               V CGS 
Sbjct: 132 SNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSA------------CAVGCGSN 179

Query: 152 C----DGGEDLVRAY---------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
           C         LV  Y         N+++  Y     V  A ++F+ IP+           
Sbjct: 180 CLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIE---------- 229

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN----TMI-------------- 240
           +R++VSWNS+I  +   G+   A   FE M+   T +      T+I              
Sbjct: 230 QRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVET 289

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           S ++H       S+L V     D +   A++  +A+ GNL LA + F  +  KN+V W++
Sbjct: 290 SSWVHEYISSRHSSLLVA---KDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSA 346

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGE------KPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           MIAG E     E A++LF QM +EG       KP+  T  S+++  S +        IH+
Sbjct: 347 MIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHK 406

Query: 355 MVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEM-KLLKNVVSWNAMIGGCASHGFA 412
               T +  D  I +ALI M A+CG I   R +F EM +  + VVSW++MIG    HG  
Sbjct: 407 YAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEG 466

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
             ALELF  MR+    P  IT+ISVLSAC+HAGLVE+G+  F SM  +YG+ P  +H+A 
Sbjct: 467 KRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYAC 526

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           LVD++GR G L++A ++I  MP + D A+WG+LL AC +H N +L ++  + ++ ++  +
Sbjct: 527 LVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNS 586

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
              +VLL NMY D GRWDD   +R+ ++ + ++K  G S+++ 
Sbjct: 587 VGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEI 629



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 112/491 (22%), Positives = 201/491 (40%), Gaps = 97/491 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR--DVVSWNVMISGYISSRGSGFLEEARYLFDIM--- 55
           ++  Y K      A ++FDEMP+   DVVSW  +IS Y S   +G ++EA   F  M   
Sbjct: 93  LVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSS---NGCVDEAFKAFGRMRWM 149

Query: 56  --------------------------PERDCVTWNTVISG-------------------- 69
                                        +C+   + + G                    
Sbjct: 150 RGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHM 209

Query: 70  YAKTGEMEEALRLFNSMP--ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS- 126
           Y+   ++  A R+FN +P   R+VVSWN++ISGF  NG+   A+  F+ M    ++++  
Sbjct: 210 YSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEP 269

Query: 127 ------ALVSGLIQNGELDEAARVLVKCGSRCDG---GEDLVRAYNTLIVGYGQRGRVEE 177
                 AL+    + G ++ ++ V     SR       +D+V     L+  + + G +  
Sbjct: 270 NRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVV-VLTALLDMHARCGNLAL 328

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           AR++FD +       EG     +N+V W++MI  Y +      A  +F QML        
Sbjct: 329 AREIFDGV-------EG-----KNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGV 376

Query: 238 TMISGYIHVLDMEEASNLF-----VKMPHP---------DTLTWNAMVSGYAQIGNLELA 283
            +    + ++ +  A +         M H          D    +A++   A+ G++E  
Sbjct: 377 EVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHG 436

Query: 284 LDFFKRMPQ--KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
              F  M +  + +VSW+SMI     + + + A++LF +M+  G +P+  T+ S+LS  S
Sbjct: 437 RQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACS 496

Query: 342 GIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
               +  G      + K   + P       L+ +  R G + EA  +   M +  ++  W
Sbjct: 497 HAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALW 556

Query: 400 NAMIGGCASHG 410
            +++  C  HG
Sbjct: 557 GSLLAACHLHG 567



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 116/268 (43%), Gaps = 20/268 (7%)

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
           +  K+   WNS+IA   T ++ + A+  F +MQ      +  TF ++L   + +  L   
Sbjct: 13  ISHKDTFHWNSLIAKNAT-QNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 350 MQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEM-KLLKNVVSWNAMIGGCA 407
           +Q+H  +T+  +  D     AL+  Y +CG    A  +F+EM +   +VVSW A+I   +
Sbjct: 72  LQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYS 131

Query: 408 SHGFATEALELFKSMRSFK-------VLPTYITFISVLSACA---HAGLVEEGRQHFKSM 457
           S+G   EA + F  MR  +            ++  +++SACA    +  +  G      +
Sbjct: 132 SNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSA-VHGL 190

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP-DKAVWGALLGACRVHNNVE 516
           V +YG         S+V +      +  A  +  G+P E  D   W +L+    ++   E
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAE 250

Query: 517 LA-----QVAAEALMKVEPENSTPYVLL 539
            A      + +E    VEP   T   LL
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALL 278


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 166/530 (31%), Positives = 274/530 (51%), Gaps = 29/530 (5%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D +  N +I  YAK G++  A  +F+ MP RNVVSW A++ GFL +G+    +  F  M 
Sbjct: 234 DTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMR 293

Query: 119 GRDSASLSALVSGLIQ--NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           G  ++     +S  ++   G      ++   C      G D+V   N+L+V Y +     
Sbjct: 294 GSGTSPNEFTLSATLKACGGGTRAGVQIHGVCVRTGFEGHDVV--ANSLVVMYSKGRWTG 351

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----- 231
           +AR++FD IP             RN+ +WNSMI  YA AG    +  +F +M  R     
Sbjct: 352 DARRVFDVIP------------SRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQP 399

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTLTWNAMVSGYAQIGNLELALD 285
           D F++ +++     +    E + +   M      P  + +   A++  Y +   L +A+ 
Sbjct: 400 DEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQ 459

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F  + ++N + W ++I G       + A+ LF +    G + D H  SS++++ +    
Sbjct: 460 VFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFAL 519

Query: 346 LHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
           +  G Q+H    KT    DV + N+L+ MY +CG   EA   F EM   +NVVSW AMI 
Sbjct: 520 VEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPA-RNVVSWTAMIN 578

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           G   HG   EA++LF+ M++  V    + ++++LSAC+H+GLV+E R++F  +  +  + 
Sbjct: 579 GVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMR 638

Query: 465 PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524
           P+ EH+A +VD++GR G L +A +LI  MP EP   VW  LL ACRVH +V + +   + 
Sbjct: 639 PKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDV 698

Query: 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           L+ V+ +N   YV+L N+ A+ G W +   +R  M+   ++K  G SW +
Sbjct: 699 LLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTE 748



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 194/463 (41%), Gaps = 71/463 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSGFLEE 47
           +I  Y K  ++  A ++FD MP+R+VVSW  ++ G++               RGSG    
Sbjct: 241 LIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPN 300

Query: 48  ARYLFDIMP---------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSM 86
              L   +                      E   V  N+++  Y+K     +A R+F+ +
Sbjct: 301 EFTLSATLKACGGGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVI 360

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELDEA 141
           P+RN+ +WN+MISG+   G   +++  F  M  R     D  + ++L+      G   E 
Sbjct: 361 PSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREG 420

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVG-----YGQRGRVEEARKLFDKIPVNCDRGEGNV 196
           A+V      R      +  A N ++ G     Y +  R+  A ++FD +           
Sbjct: 421 AQVHAAMAVR-----GVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLE---------- 465

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEA 252
             +RN + W ++I+ +A+ G V  A  +F +     +  D    +++++ +     +E+ 
Sbjct: 466 --RRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQG 523

Query: 253 SNLF---VKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             +     K P   D    N++V  Y + G    A   F+ MP +N+VSW +MI G   +
Sbjct: 524 KQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKH 583

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPDVPI 366
                AI LF +MQ EG + D   + ++LS    SG+VD            + + P    
Sbjct: 584 GHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEH 643

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
              ++ +  R G + EA+ +   M +   V  W  ++  C  H
Sbjct: 644 YACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVH 686



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 168/383 (43%), Gaps = 57/383 (14%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-----D 59
           Y K R    AR++FD +P R++ +WN MISGY  + G G   ++  +F  M  R     D
Sbjct: 344 YSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHA-GQG--RDSLLVFREMQRRHDEQPD 400

Query: 60  CVTWNTVISGYAKTGEMEEALRLFNSM------PARNVVSWNAMISGFLQNGDVANAIEF 113
             T+ +++   +  G   E  ++  +M      PA N +   A++  +++   +  A++ 
Sbjct: 401 EFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQV 460

Query: 114 FDRMPGRDSASLSALVSGLIQNGELDEAA---RVLVKCGSRCDGGEDLVRAYNTLIVGYG 170
           FD +  R++   + ++ G  Q G++ EA    R     G R DG        ++++  + 
Sbjct: 461 FDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADG-----HVLSSVVAVFA 515

Query: 171 QRGRVEEARKLF---DKIPVNCD----------------RGEGNVRFK----RNIVSWNS 207
               VE+ +++     K P   D                 GE   RF+    RN+VSW +
Sbjct: 516 DFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTA 575

Query: 208 MIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-- 261
           MI    K G    A ++FE+M    +E D  ++  ++S   H   ++E    F ++    
Sbjct: 576 MINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDR 635

Query: 262 ---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGCETNKDYEGAIKL 317
              P    +  MV    + G L  A +    MP +  V  W ++++ C  +KD     ++
Sbjct: 636 RMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREV 695

Query: 318 F-IQMQVEGEKPDRHT-FSSILS 338
             + + V+G+ P  +   S+IL+
Sbjct: 696 GDVLLAVDGDNPVNYVMLSNILA 718


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/523 (32%), Positives = 279/523 (53%), Gaps = 30/523 (5%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--GRD 121
            ++I+ YA  G +  A  LF++  + NV  WN +I  F       N++  + RM   G  
Sbjct: 38  TSLIAQYASLGSISHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQ 97

Query: 122 SASLS----ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           + + +        G + + EL   A   V       G E  V   N+L+  YG+ G  + 
Sbjct: 98  ATNFTFPFLLKACGCLADFELGARAHAHVVVF----GYESDVFVANSLMAMYGRFGCFDF 153

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           +R++F+++P            +RN+VSW+SM+  YA  G       +F +ML        
Sbjct: 154 SRQVFERMP------------ERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNR 201

Query: 238 TMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
             I   +  +  E  ++ F ++        D    NA +  YA+ G +++A  FF  +  
Sbjct: 202 GSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILD 261

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           K+LV+W SMI           A++LF QM++ G  PD  T  S++   S +    L   +
Sbjct: 262 KDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFV 321

Query: 353 HQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H ++T++   + + ++ A+I +Y +CG +  AR  F+ M   +N++SW+ MI G   HG 
Sbjct: 322 HGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSA-RNLISWSTMISGYGMHGH 380

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             EAL LF  M++  + P +I F+ VLSAC+H GL+ EG + FK+M  ++G+ PR EH+A
Sbjct: 381 GREALCLFDQMKA-SIKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYA 439

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            +VD++GR GRL +A   I+ MP  PD  VWGALLGACR+H+N+E A+ AA  L  ++ E
Sbjct: 440 CMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNLETAETAARHLFNLDAE 499

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N   Y+LL N+YA  G+  +A+++R LMKS  ++K  G++ ++
Sbjct: 500 NPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTIIE 542



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 172/374 (45%), Gaps = 46/374 (12%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D    N++++ Y + G  + + ++F  MP RNVVSW++M+  +  NG     +  F R
Sbjct: 132 ESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWR 191

Query: 117 M------PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG-Y 169
           M      P R   S+   ++ + +  E D+  RV++      D G D  ++     +G Y
Sbjct: 192 MLNEGIAPNR--GSIVNAMACIHREHEADDFCRVVI------DNGLDSDQSVQNAAMGMY 243

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM- 228
            + GR++ AR+ F  I              +++V+W SMI  Y +A   ++A E+F+QM 
Sbjct: 244 ARCGRIDVARRFFYGI------------LDKDLVAWTSMIEAYVQADLPINALELFKQMK 291

Query: 229 ---LERDTFSWNTMISGYIHVLDMEEA--------SNLFVKMPHPDTLTWNAMVSGYAQI 277
              +  D+ +  ++I    ++   + A         + F      DT    A++  Y + 
Sbjct: 292 LLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDT----AVIDLYVKC 347

Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
           GNLE A   F RM  +NL+SW++MI+G   +     A+ LF QM+    KPD   F  +L
Sbjct: 348 GNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQMKAS-IKPDHIAFVMVL 406

Query: 338 SMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           S  S    +  G +  + + +   V P       ++ +  R G + EA+   E M +  +
Sbjct: 407 SACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPD 466

Query: 396 VVSWNAMIGGCASH 409
              W A++G C  H
Sbjct: 467 AGVWGALLGACRIH 480



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 40/227 (17%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS------------------------- 39
           Y +   +  AR+ F  +  +D+V+W  MI  Y+ +                         
Sbjct: 243 YARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTL 302

Query: 40  -------RGSGFLEEARYLFDIMPE---RDCVTWNT-VISGYAKTGEMEEALRLFNSMPA 88
                        + AR++  ++     ++ +  +T VI  Y K G +E A + F+ M A
Sbjct: 303 LSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSA 362

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---DSASLSALVSGLIQNGELDEAARVL 145
           RN++SW+ MISG+  +G    A+  FD+M      D  +   ++S     G + E     
Sbjct: 363 RNLISWSTMISGYGMHGHGREALCLFDQMKASIKPDHIAFVMVLSACSHGGLIAEGWECF 422

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
            K  +R  G       Y  ++   G+ GR+ EA+   +++P+  D G
Sbjct: 423 -KAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAG 468



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 18/217 (8%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---E 57
           +I  YVK   +  ARK FD M  R+++SW+ MISGY    G G   EA  LFD M    +
Sbjct: 340 VIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGY-GMHGHG--REALCLFDQMKASIK 396

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAIE 112
            D + +  V+S  +  G + E    F +M     V+     +  M+    + G ++ A  
Sbjct: 397 PDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQA 456

Query: 113 FFDRMP-GRDSASLSALVSGLIQNGEL---DEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           F +RMP   D+    AL+     +  L   + AAR L    +   G   L+   + +   
Sbjct: 457 FIERMPITPDAGVWGALLGACRIHSNLETAETAARHLFNLDAENPGRYILL---SNIYAS 513

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
            G+R   ++ R L     V    G   +  K  + ++
Sbjct: 514 SGKRKEADDIRALMKSRGVRKTVGHTIIEIKNKVYTF 550


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 147/345 (42%), Positives = 218/345 (63%), Gaps = 4/345 (1%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           D FS N +I  Y++   +E+A  +F  MP  D ++W ++++GY+Q G ++ A + F+ MP
Sbjct: 154 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMP 213

Query: 292 QKNLVSWNSMIAG-CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
           ++N VSWN+MIA   ++N+ +E A  LF +M++E    D+   +S+LS  +G+  L  G 
Sbjct: 214 ERNSVSWNAMIAAYVQSNRLHE-AFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGK 272

Query: 351 QIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            IH  + K+ I  D  +   +I MY +CG + +A  +F E+   K + SWN MIGG A H
Sbjct: 273 WIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQ-KGISSWNCMIGGLAMH 331

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G    A+ELFK M    V P  ITF++VLSACAH+GLVEEG+ +F+ M    G++P +EH
Sbjct: 332 GKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEH 391

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           F  +VD++GR G LE+A  LI  MP  PD  V GAL+GACR+H N EL +   + ++++E
Sbjct: 392 FGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELE 451

Query: 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           P NS  YVLL N+YA  GRW+D  +VR LM    +KK  G+S ++
Sbjct: 452 PHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIE 496



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 176/390 (45%), Gaps = 69/390 (17%)

Query: 71  AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA----SLS 126
           +K+G++  AL +F+ +P  +   +N +  G+L+     N I  + RM  +  +    +  
Sbjct: 65  SKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYP 124

Query: 127 ALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
            L+     +  ++E  ++   ++K G   DG      + N LI  Y     +E+AR++FD
Sbjct: 125 PLIRACCIDYAIEEGKQIHAHVLKFGFGADG-----FSLNNLIHMYVNFQSLEQARRVFD 179

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
            +P            +R++VSW S+I  Y++ G V  ARE+FE M ER++ SWN MI+ Y
Sbjct: 180 NMP------------QRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAY 227

Query: 244 IHVLDMEEASNLFVKMP---------------------------------------HPDT 264
           +    + EA  LF +M                                          D+
Sbjct: 228 VQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDS 287

Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
                ++  Y + G LE A + F  +PQK + SWN MI G   +   E AI+LF +M+ E
Sbjct: 288 KLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMERE 347

Query: 325 GEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAI 380
              PD  TF ++LS    SG+V+   G    Q +T+   + P +     ++ +  R G +
Sbjct: 348 MVAPDGITFVNVLSACAHSGLVE--EGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLL 405

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            EAR +  EM +  +     A++G C  HG
Sbjct: 406 EEARKLINEMPVNPDAGVLGALVGACRIHG 435



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 144/303 (47%), Gaps = 59/303 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  YV  + + +AR++FD MPQRDVVSW  +I+GY      GF+++AR +F++MPER+ 
Sbjct: 161 LIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQ---WGFVDKAREVFELMPERNS 217

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN +I+ Y ++  + EA  LF+ M   NVV     +  F+                  
Sbjct: 218 VSWNAMIAAYVQSNRLHEAFALFDRMRLENVV-----LDKFV------------------ 254

Query: 121 DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
            +AS+ +  +GL   G L++   +   + K G   D      +   T+I  Y + G +E+
Sbjct: 255 -AASMLSACTGL---GALEQGKWIHGYIEKSGIELDS-----KLATTVIDMYCKCGCLEK 305

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE----QMLERDT 233
           A ++F+++P            ++ I SWN MI   A  G   +A E+F+    +M+  D 
Sbjct: 306 ASEVFNELP------------QKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDG 353

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFK 288
            ++  ++S   H   +EE  + F  M       P    +  MV    + G LE A     
Sbjct: 354 ITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLIN 413

Query: 289 RMP 291
            MP
Sbjct: 414 EMP 416



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 129/292 (44%), Gaps = 13/292 (4%)

Query: 248 DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK----NLVSWNSMIA 303
           D+  A  +F K+PHPD   +N +  GY +       +  + RM  K    N  ++  +I 
Sbjct: 69  DLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIR 128

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363
            C  +   E   ++   +   G   D  + ++++ M      L    ++   + +    D
Sbjct: 129 ACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQR---D 185

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
           V    +LIT Y++ G + +AR +FE M   +N VSWNAMI          EA  LF  MR
Sbjct: 186 VVSWTSLITGYSQWGFVDKAREVFELMP-ERNSVSWNAMIAAYVQSNRLHEAFALFDRMR 244

Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
              V+       S+LSAC   G +E+G+      + + GIE   +   +++D+  + G L
Sbjct: 245 LENVVLDKFVAASMLSACTGLGALEQGKW-IHGYIEKSGIELDSKLATTVIDMYCKCGCL 303

Query: 484 EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           E A ++   +P +   + W  ++G   +H      + A E   ++E E   P
Sbjct: 304 EKASEVFNELP-QKGISSWNCMIGGLAMHGK---GEAAIELFKEMEREMVAP 351


>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 628

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 183/535 (34%), Positives = 290/535 (54%), Gaps = 49/535 (9%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--GRD 121
           + ++  Y K G +  A RLF+ MP RNVV+WN++ISG+L  G    AIE F  M   G D
Sbjct: 118 SALVDMYGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGID 177

Query: 122 SA--SLSALVSGL--IQNGELDEAARVL-VKCGSRCDGGEDLVRAYN-----TLIVGYGQ 171
               S+SA++ G   +++ +L      L +KCG            YN      LI  Y +
Sbjct: 178 PTPFSVSAVLVGCWRMEDTKLGIQVHGLSMKCGF----------CYNIVVGTCLIDLYSK 227

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--- 228
              ++ +R +FD +P            +RNI++W SM+  YA     V+A  +   M   
Sbjct: 228 GWNIDASRLMFDLMP------------ERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRL 275

Query: 229 -LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELA 283
            +  +  ++N ++S +    D++    +  ++       ++     +V+ Y++  +  L 
Sbjct: 276 GIRLNYVTYNCLLSSFSSSNDLDHCKQVHCRIIREGLESNSYLEVTLVTVYSECSSSSLE 335

Query: 284 LDFFK---RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
            DF K    + + + +SWN++I G     + E A+K F +M+  G   D  TF+S+L   
Sbjct: 336 -DFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVLRAI 394

Query: 341 SGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
             I  L  G QIH +V K     ++ + N L++MYARCG+I +A+ +F  M    +V+SW
Sbjct: 395 GMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSLMDR-HDVISW 453

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           N+++ GCA HG+  EA+ELF+ MR   V P   TF+ VLSAC H GL+++G ++F  M N
Sbjct: 454 NSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRHVGLLDKGLEYFDLMRN 513

Query: 460 EYGIE-PRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
           +Y +E P  EH++S+VD+  R G L +A D I  MP EP  +V+ ALL AC+VH NVE+A
Sbjct: 514 DYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPGPSVYKALLSACQVHGNVEIA 573

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
              A+ L+++ P +   YVLL N+ A VG WD+   +R +M    ++K  GYSW+
Sbjct: 574 VRCAKKLLQMCPNDPVIYVLLSNVQATVGYWDNVASIRKVMCDRGVRKEPGYSWI 628



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 196/421 (46%), Gaps = 55/421 (13%)

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
           V F  N+   ++++  Y K G V SA+ +F++M  R+  +WN++ISGY+HV   E A  L
Sbjct: 108 VGFDSNVYICSALVDMYGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIEL 167

Query: 256 FVKM------PHPDTLT------W---------------------------NAMVSGYAQ 276
           F++M      P P +++      W                             ++  Y++
Sbjct: 168 FLEMVKVGIDPTPFSVSAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSK 227

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
             N++ +   F  MP++N+++W SM+AG    +    A+ L   MQ  G + +  T++ +
Sbjct: 228 GWNIDASRLMFDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCL 287

Query: 337 LSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
           LS  S   DL    Q+H +++ + +  +  +   L+T+Y+ C     +  + +  K+   
Sbjct: 288 LSSFSSSNDLDHCKQVHCRIIREGLESNSYLEVTLVTVYSEC----SSSSLEDFNKVCSG 343

Query: 396 V-----VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
           V     +SWNA+IGG ++ G    AL+ F  MR   +     TF SVL A      ++EG
Sbjct: 344 VTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVLRAIGMISTLDEG 403

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
           +Q   ++V + G    +     LV +  R G + DA  +   M    D   W +LL  C 
Sbjct: 404 KQ-IHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSLMD-RHDVISWNSLLSGCA 461

Query: 511 VHNNVELAQVAAEALMK--VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN-NIKKP 567
            H     A    E + +  V+P+N+T ++++ +    VG  D   E   LM+++ +++ P
Sbjct: 462 YHGYGREAVELFEQMRRSGVKPDNTT-FLVVLSACRHVGLLDKGLEYFDLMRNDYSLESP 520

Query: 568 T 568
           T
Sbjct: 521 T 521



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 113/473 (23%), Positives = 211/473 (44%), Gaps = 63/473 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-----FLEEARYLFDIM 55
           ++  Y K   ++ A++LFDEMP R+VV+WN +ISGY+           FLE  +   D  
Sbjct: 120 LVDMYGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPT 179

Query: 56  P-------------------------ERDC------VTWNTVISGYAKTGEMEEALRLFN 84
           P                            C      V    +I  Y+K   ++ +  +F+
Sbjct: 180 PFSVSAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFD 239

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEF---FDRMPGR-DSASLSALVSGLIQNGELDE 140
            MP RN+++W +M++G+        A+       R+  R +  + + L+S    + +LD 
Sbjct: 240 LMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDH 299

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +  V C    +G E       TL+  Y +      + + F+K+        G  R+ +
Sbjct: 300 CKQ--VHCRIIREGLESNSYLEVTLVTVYSECS--SSSLEDFNKV------CSGVTRWDQ 349

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMIS--GYIHVLDM-EEAS 253
             +SWN++I   +  G+  +A + F +M    ++ D F++ +++   G I  LD  ++  
Sbjct: 350 --ISWNAVIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVLRAIGMISTLDEGKQIH 407

Query: 254 NLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
            L +K  +   L   N +VS YA+ G++  A   F  M + +++SWNS+++GC  +    
Sbjct: 408 ALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSLMDRHDVISWNSLLSGCAYHGYGR 467

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPIN---NA 369
            A++LF QM+  G KPD  TF  +LS    +  L  G++   ++      + P     ++
Sbjct: 468 EAVELFEQMRRSGVKPDNTTFLVVLSACRHVGLLDKGLEYFDLMRNDYSLESPTTEHYSS 527

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           ++ +++R G + EA      M +      + A++  C  HG    A+   K +
Sbjct: 528 MVDLFSRAGYLSEAEDFINTMPIEPGPSVYKALLSACQVHGNVEIAVRCAKKL 580



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 4/153 (2%)

Query: 291 PQKNLVSWNSMIAGCETNKDYEGA-IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
           P  +  S NS IA C+T++      +KL  Q+Q  G  P  H  + ++S  +    + +G
Sbjct: 40  PGNDFFSCNSHIA-CDTDEKQSSVDLKLLAQLQQHGSAPTAHILNRMVSSCAKSGSVFVG 98

Query: 350 MQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
           +Q+H  + K     +V I +AL+ MY +CGA+  A+ +F+EM   +NVV+WN++I G   
Sbjct: 99  IQLHSTIIKVGFDSNVYICSALVDMYGKCGAVSSAQRLFDEMP-HRNVVTWNSLISGYLH 157

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
            G    A+ELF  M    + PT  +  +VL  C
Sbjct: 158 VGCPEIAIELFLEMVKVGIDPTPFSVSAVLVGC 190


>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
 gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
          Length = 834

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 194/677 (28%), Positives = 323/677 (47%), Gaps = 113/677 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
           M++ Y    +   A  L   MP  DVVSWN ++SGY                        
Sbjct: 103 MLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPD 162

Query: 40  --------RGSGFLEEARYLFDIMP-------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                   +  G L++      I         E D    + ++  Y K   +E+AL  F+
Sbjct: 163 RTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFH 222

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS-ALVSGLIQNGELDE--A 141
            M  RN VSW A+I+G +QN      +E   R       S +  L +  I+N    +   
Sbjct: 223 GMGERNSVSWGAVIAGCVQNEQYMRGLELLCRCKAITCLSTARQLHAHAIKNKFSSDRVV 282

Query: 142 ARVLVKCGSRCDGGEDLVRAY-----------NTLIVGYGQRGRVEEARKLFDKIPVNCD 190
              +V   ++ D   D  RA+           N ++VG  + G   EA +LF +      
Sbjct: 283 GTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLF-QFMTRSG 341

Query: 191 RGEGNVR-------------FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
            G G V              F  ++   N+++  Y K   +V A  +F++M +RD+ SWN
Sbjct: 342 IGFGVVSLSGVFSACAEVKGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWN 401

Query: 238 TMISGY----------IHVLDMEEAS---------NLFVKMPHPDTLTWNAMVSG----- 273
           T+I+            +H+ +M  +          ++        +L +  +V G     
Sbjct: 402 TIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKS 461

Query: 274 ---------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
                          Y + G +  AL    R+  + LVSWNS+IAG   NK  E A K F
Sbjct: 462 GLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGGQELVSWNSIIAGFSLNKQSEEAQKFF 521

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARC 377
            +M   G KPD  T++++L   + +  + LG QIH Q++ + ++ D  I++ L+ MYA+C
Sbjct: 522 SEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEMLGDEFISSTLVDMYAKC 581

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G + +++++FE+++ L + VSWNAMI G A HG   EALE+F+  +   V P + TF++V
Sbjct: 582 GNMPDSQLMFEKVQKL-DFVSWNAMICGYALHGQGFEALEMFERTQKANVAPNHATFVAV 640

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           L AC+H GL+++G ++F  M + Y +EP++EHFA +          ++A+  I+ MP E 
Sbjct: 641 LRACSHVGLLDDGCRYFHLMTSRYKLEPQLEHFACMGP--------QEALKFIRSMPLEA 692

Query: 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
           D  +W  LL  C++  +VE+A+ AA  +++++P++S+ Y+LL N+YA+ G+W D +  R 
Sbjct: 693 DAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRR 752

Query: 558 LMKSNNIKKPTGYSWVD 574
           LM+   +KK  G SW++
Sbjct: 753 LMRQGRLKKEPGCSWIE 769



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 166/638 (26%), Positives = 273/638 (42%), Gaps = 100/638 (15%)

Query: 10  EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
           + A AR L         VS N ++  Y    G+     A  +FD MP RD V+WNT+++ 
Sbjct: 51  QAAHARMLVSGFVPTMFVS-NCLLQMYARCGGAA---HAHGVFDTMPHRDTVSWNTMLTA 106

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGD----VANAIEFFDRMPGRDSASL 125
           YA  G+   A  L   MP  +VVSWNA++SG+ Q G     V  +IE        D  +L
Sbjct: 107 YAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTL 166

Query: 126 SALVSGLIQNGELDEAA------RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           + L+      G LD+ A       + VK G   D     VRA + L+  YG+   +E+A 
Sbjct: 167 AVLLKAC---GGLDDLALGVQIHALAVKTGLEMD-----VRAGSALVDMYGKCRSLEDAL 218

Query: 180 KLFD-----------KIPVNCDRGEGNVR----------------------------FKR 200
             F             +   C + E  +R                            F  
Sbjct: 219 HFFHGMGERNSVSWGAVIAGCVQNEQYMRGLELLCRCKAITCLSTARQLHAHAIKNKFSS 278

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF---- 256
           + V   +++  YAKA  +V AR  F  +      + N M+ G +      EA  LF    
Sbjct: 279 DRVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMT 338

Query: 257 --------------------VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
                               VK    D    NA++  Y +   L  A   F+ M Q++ V
Sbjct: 339 RSGIGFGVVSLSGVFSACAEVKGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSV 398

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
           SWN++IA  E N+ YE  I    +M   G + D  T+ S+L   +G+  L  G+ +H   
Sbjct: 399 SWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGKA 458

Query: 357 TKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            K+ +  D  +++ ++ MY +CG I EA  + + +   + +VSWN++I G + +  + EA
Sbjct: 459 IKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIG-GQELVSWNSIIAGFSLNKQSEEA 517

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF--ASL 473
            + F  M    V P + T+ +VL +CA+   +E G+Q    ++ +   E   + F  ++L
Sbjct: 518 QKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQ---EMLGDEFISSTL 574

Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN----VELAQVAAEALMKVE 529
           VD+  + G + D+  + + +  + D   W A++    +H      +E+ +   +A   V 
Sbjct: 575 VDMYAKCGNMPDSQLMFEKVQ-KLDFVSWNAMICGYALHGQGFEALEMFERTQKA--NVA 631

Query: 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
           P ++T +V +    + VG  DD      LM S    +P
Sbjct: 632 PNHAT-FVAVLRACSHVGLLDDGCRYFHLMTSRYKLEP 668



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 90/211 (42%), Gaps = 35/211 (16%)

Query: 332 TFSSI--LSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFE 388
           TFS +  L  S+G   L  G   H +M+    +P + ++N L+ MYARCG    A  +F+
Sbjct: 31  TFSHVYQLCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVFD 90

Query: 389 EM-------------------------KLL-----KNVVSWNAMIGGCASHGFATEALEL 418
            M                          LL      +VVSWNA++ G    G   + + L
Sbjct: 91  TMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGL 150

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
              M    V P   T   +L AC     +  G Q   ++  + G+E  +   ++LVD+ G
Sbjct: 151 SIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQ-IHALAVKTGLEMDVRAGSALVDMYG 209

Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           +   LEDA+    GM  E +   WGA++  C
Sbjct: 210 KCRSLEDALHFFHGMG-ERNSVSWGAVIAGC 239


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 192/629 (30%), Positives = 316/629 (50%), Gaps = 76/629 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           ++S Y     +  A  +F  M QRD V++N +I+G +S  G G  E+A  LF  M     
Sbjct: 329 LVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING-LSQCGYG--EKAMELFKRMHLDGL 385

Query: 56  -PERD--------CVTWNTVISG-------------------------YAKTGEMEEALR 81
            P+ +        C    T+  G                         YAK  ++E AL 
Sbjct: 386 EPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALD 445

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNGE 137
            F      NVV WN M+  +    D+ N+   F +M   +      +  +++   I+ G+
Sbjct: 446 YFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGD 505

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAY--NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           L+   ++     S+       + AY  + LI  Y + G+++ A  +              
Sbjct: 506 LELGEQI----HSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL------------- 548

Query: 196 VRFK-RNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME 250
           +RF  +++VSW +MI  Y +      A   F QML+R    D       +S    +  ++
Sbjct: 549 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 608

Query: 251 EASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           E   +  +        D    NA+V+ Y++ G +E +   F++    + ++WN++++G +
Sbjct: 609 EGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQ 668

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVP 365
            + + E A+++F++M  EG   +  TF S +  +S   ++  G Q+H ++TKT    +  
Sbjct: 669 QSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETE 728

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           + NALI+MYA+CG+I +A   F E+   KN VSWNA+I   + HGF +EAL+ F  M   
Sbjct: 729 VCNALISMYAKCGSISDAEKQFLEVST-KNEVSWNAIINAYSKHGFGSEALDSFDQMIHS 787

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            V P ++T + VLSAC+H GLV++G  +F+SM +EYG+ P+ EH+  +VD++ R G L  
Sbjct: 788 NVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSR 847

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A + I+ MP +PD  VW  LL AC VH N+E+ + AA  L+++EPE+S  YVLL N+YA 
Sbjct: 848 AKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAV 907

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             +WD  +  R  MK   +KK  G SW++
Sbjct: 908 SKKWDARDLTRQKMKEKGVKKEPGQSWIE 936



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 150/569 (26%), Positives = 248/569 (43%), Gaps = 77/569 (13%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y+ + ++  A K+FDEMP+R + +WN MI   ++SR    + E   LF  M   +     
Sbjct: 130 YLFKGDLYGAFKVFDEMPERTIFTWNKMIKE-LASRN--LIGEVFGLFVRMVSENVTPNE 186

Query: 65  TVISGYAKTG----------EMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
              SG  +            E   A  L+  +    VV  N +I  + +NG V  A   F
Sbjct: 187 GTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVC-NPLIDLYSRNGFVDLARRVF 245

Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
           D +  +D +S  A++SGL +N    EA R+   C     G      A+++++    +   
Sbjct: 246 DGLRLKDHSSWVAMISGLSKNECEAEAIRLF--CDMYVLGIMPTPYAFSSVLSACKKIES 303

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
           +E   +L   +          + F  +    N+++  Y   G+++SA  IF  M +RD  
Sbjct: 304 LEIGEQLHGLVL--------KLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAV 355

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSG----------------- 273
           ++NT+I+G       E+A  LF +M      PD+ T  ++V                   
Sbjct: 356 TYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYT 415

Query: 274 ------------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
                             YA+  ++E ALD+F     +N+V WN M+       D   + 
Sbjct: 416 TKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSF 475

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMY 374
           ++F QMQ+E   P+++T+ SIL     + DL LG QIH  + KT    +  + + LI MY
Sbjct: 476 RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMY 535

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           A+ G +  A  I       K+VVSW  MI G   + F  +AL  F+ M    +    +  
Sbjct: 536 AKLGKLDTAWDILIRFA-GKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGL 594

Query: 435 ISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
            + +SACA    ++EG+Q H ++ V+  G    +    +LV +  R G++E++      +
Sbjct: 595 TNAVSACAGLQALKEGQQIHAQACVS--GFSSDLPFQNALVTLYSRCGKIEESY-----L 647

Query: 494 PFEP----DKAVWGALLGACRVHNNVELA 518
            FE     D   W AL+   +   N E A
Sbjct: 648 AFEQTEAGDNIAWNALVSGFQQSGNNEEA 676


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 170/546 (31%), Positives = 279/546 (51%), Gaps = 63/546 (11%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMISG 100
           LE AR +FD   + +  +WN++IS YA  G +  A  LF  M +     ++++WN+++SG
Sbjct: 283 LELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSG 342

Query: 101 FLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
            L  G   N +     +       DS S+++ +  +I+ G  +                 
Sbjct: 343 HLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKE------------- 389

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
                    I GY  R ++E                        ++    S++  Y K  
Sbjct: 390 ---------IHGYIMRSKLE-----------------------YDVYVCTSLVDMYIKND 417

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVS 272
            +  A  +F     ++  +WN++ISGY +    + A  L ++M       D +TWN++VS
Sbjct: 418 CLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVS 477

Query: 273 GYAQIGNLELALDFFKRMPQ----KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           GY+  G  E AL    R+       N+VSW +MI+GC  N++Y  A++ F QMQ E  KP
Sbjct: 478 GYSMSGCSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKP 537

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIF 387
           +  T S++L   +G   L  G +IH    K   + D+ I  ALI MY++ G +  A  +F
Sbjct: 538 NSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVF 597

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
             +K  K +  WN M+ G A +G   E   LF +M    + P  ITF ++LS C ++GLV
Sbjct: 598 RNIKE-KTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLV 656

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
            +G ++F SM  +Y I P IEH++ +VD++G+ G L++A+D I  MP + D ++WGA+L 
Sbjct: 657 MDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLA 716

Query: 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
           ACR+H ++++A++AA  L ++EP NS  YVL+ N+Y+   RW D   ++  M +  +K P
Sbjct: 717 ACRLHKDIKIAEIAARNLFRLEPYNSANYVLMMNIYSTFERWGDVERLKESMTAMGVKIP 776

Query: 568 TGYSWV 573
             +SW+
Sbjct: 777 NVWSWI 782



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 121/509 (23%), Positives = 201/509 (39%), Gaps = 125/509 (24%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           ++ A  +FD  P ++   WNT++    ++   E+AL L   M + +  + +  I   LQ 
Sbjct: 182 IDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQ- 240

Query: 105 GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT 164
                               L AL  G   +G +    R  V   S C          N+
Sbjct: 241 ----------------ACGKLRALNEGKQIHGYVIRFGR--VSNTSIC----------NS 272

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           ++  Y +  R+E AR +FD                 N+ SWNS+I  YA  G +  A ++
Sbjct: 273 IVSMYSRNNRLELARAVFDSTE------------DHNLASWNSIISSYAVNGCLNGAWDL 320

Query: 225 FEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVS---- 272
           F +M    ++ D  +WN+++SG++     E        +      PD+ +  + +     
Sbjct: 321 FREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIE 380

Query: 273 -GYAQIGN------------------------------LELALDFFKRMPQKNLVSWNSM 301
            GY  +G                               LE A   F     KN+ +WNS+
Sbjct: 381 LGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSL 440

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
           I+G      ++ A KL IQM+ EG K D  T+                            
Sbjct: 441 ISGYTYKGLFDNAEKLLIQMKEEGIKADLVTW---------------------------- 472

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMK---LLKNVVSWNAMIGGCASHGFATEALEL 418
                 N+L++ Y+  G   EA  +   +K   L  NVVSW AMI GC  +   T+AL+ 
Sbjct: 473 ------NSLVSGYSMSGCSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQF 526

Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIV 477
           F  M+   V P   T  ++L ACA   L+++G + H  SM  ++G    I    +L+D+ 
Sbjct: 527 FSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSM--KHGFVDDIYIATALIDMY 584

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
            + G+L+ A ++ + +  E     W  ++
Sbjct: 585 SKGGKLKVAHEVFRNIK-EKTLPCWNCMM 612



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/463 (22%), Positives = 189/463 (40%), Gaps = 68/463 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++S Y +   +  AR +FD     ++ SWN +IS Y     +G L  A  LF  M     
Sbjct: 273 IVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAV---NGCLNGAWDLFREMESSSI 329

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPA---------------------------- 88
             D +TWN+++SG+   G  E  L    S+ +                            
Sbjct: 330 KPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKE 389

Query: 89  -----------RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGE 137
                       +V    +++  +++N  +  A   F     ++  + ++L+SG    G 
Sbjct: 390 IHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGL 449

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
            D A ++L++   + +G +  +  +N+L+ GY   G  EEA  + ++I         ++ 
Sbjct: 450 FDNAEKLLIQ--MKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIK--------SLG 499

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH------VLDMEE 251
              N+VSW +MI    +  +   A + F QM E +    +T IS  +       +L   E
Sbjct: 500 LTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGE 559

Query: 252 ASNLFVKMPH---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
             + F  M H    D     A++  Y++ G L++A + F+ + +K L  WN M+ G    
Sbjct: 560 EIHCF-SMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIY 618

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHLGMQIHQMVTKTVIPDVPI 366
              E    LF  M   G +PD  TF+++LS   +SG+V              ++ P +  
Sbjct: 619 GHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIEH 678

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            + ++ +  + G + EA      M    +   W A++  C  H
Sbjct: 679 YSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAACRLH 721



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 121/513 (23%), Positives = 217/513 (42%), Gaps = 78/513 (15%)

Query: 55  MPER-DCVTWN-TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQ-NGDVANAI 111
           MP++ + VT + +++  Y + G+ E A ++F    ARN + WN+ +  F    GD    +
Sbjct: 57  MPKKGNLVTMDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEIL 116

Query: 112 EFFDRMPGR----DSASLSALVSGLIQNGEL---DEAARVLVKCGSRCDGGEDLVRAYNT 164
           E F  +  +    DS +L+ ++   +   EL    E    L+K G + D     V     
Sbjct: 117 EVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVD-----VHLSCA 171

Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
           LI  Y +   ++ A ++FD+ P+  D              WN+++M   ++     A E+
Sbjct: 172 LINLYEKCLGIDRANQVFDETPLQED------------FLWNTIVMANLRSERWEDALEL 219

Query: 225 FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH---------PDTLTWNAMVSGYA 275
             +M      + +  I   +       A N   K  H          +T   N++VS Y+
Sbjct: 220 SRRMQSASAKATDGTIVKLLQACGKLRALNE-GKQIHGYVIRFGRVSNTSICNSIVSMYS 278

Query: 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
           +   LELA   F      NL SWNS+I+    N    GA  LF +M+    KPD  T++S
Sbjct: 279 RNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNS 338

Query: 336 ILS------------------MSSG--------------IVDL---HLGMQIHQMVTKTV 360
           +LS                   S+G              +++L   +LG +IH  + ++ 
Sbjct: 339 LLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSK 398

Query: 361 IP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
           +  DV +  +L+ MY +   + +A ++F   K  KN+ +WN++I G    G    A +L 
Sbjct: 399 LEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTK-NKNICAWNSLISGYTYKGLFDNAEKLL 457

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
             M+   +    +T+ S++S  + +G  EE      + +   G+ P +  + +++    +
Sbjct: 458 IQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVI-NRIKSLGLTPNVVSWTAMISGCCQ 516

Query: 480 HGRLEDAMDLIKGMPFE---PDKAVWGALLGAC 509
           +    DA+     M  E   P+      LL AC
Sbjct: 517 NENYTDALQFFSQMQEENVKPNSTTISTLLRAC 549



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 185/422 (43%), Gaps = 30/422 (7%)

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK-A 215
           +LV    +++  Y + G  E A K+F             V F RN + WNS +  +A   
Sbjct: 62  NLVTMDGSMMRNYLEFGDFESATKVF------------FVGFARNYLLWNSFLEEFASFG 109

Query: 216 GDVVSAREIFEQMLER----DTFSWNTMISGYIHVLD----MEEASNLFVKMPHPDTLTW 267
           GD     E+F+++ ++    D+ +   ++   + +++    ME  + L  +    D    
Sbjct: 110 GDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLS 169

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
            A+++ Y +   ++ A   F   P +    WN+++     ++ +E A++L  +MQ    K
Sbjct: 170 CALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAK 229

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARII 386
               T   +L     +  L+ G QIH  V +   + +  I N++++MY+R   +  AR +
Sbjct: 230 ATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAV 289

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+  +   N+ SWN++I   A +G    A +LF+ M S  + P  IT+ S+LS     G 
Sbjct: 290 FDSTE-DHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGS 348

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL---IKGMPFEPDKAVWG 503
            E    + +S+    G +P      S +  V   G      ++   I     E D  V  
Sbjct: 349 YENVLTNIRSL-QSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCT 407

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
           +L+     ++ +E A+V        + +N   +  L + Y   G +D+A ++ + MK   
Sbjct: 408 SLVDMYIKNDCLEKAEV---VFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEG 464

Query: 564 IK 565
           IK
Sbjct: 465 IK 466


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 189/554 (34%), Positives = 283/554 (51%), Gaps = 59/554 (10%)

Query: 33  ISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV 92
           I  + S + SG L+ AR +F  +P     T N++I G       +EAL  +  M      
Sbjct: 26  IVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEM------ 79

Query: 93  SWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRC 152
               M+ G +                  D  +  +L      + E  +     + C S  
Sbjct: 80  ----MVQGLIP-----------------DRYTFPSLFKSCRNSSEGKQ-----IHCHSTK 113

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
            G      A NTL+  Y   G +  ARK+FDK+              + +VSW +MI  +
Sbjct: 114 LGFASDTYAQNTLMNMYSNCGCLVSARKVFDKME------------DKTVVSWATMIGVH 161

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD-MEEASNL-FVKMPHP-------- 262
           A+      A  +F++M++ +    N +    ++VL     A +L  VK  H         
Sbjct: 162 AQWDQPNEAVRLFDRMMKSENVKPNEVT--LVNVLTACARARDLAMVKRIHEYIDEHGFG 219

Query: 263 -DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
              +    ++  Y + G ++LA D F +  +KNL SWN MI G   + +YE A+ LF +M
Sbjct: 220 RHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREM 279

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAI 380
           Q +G K D+ T +S+L   + +  L LG  +H  + K  I  DV +  AL+ MYA+CG+I
Sbjct: 280 QTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSI 339

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
             A  +F EM   K+V++W A+I G A  G A  AL+ F  M    V P  ITF+ VL+A
Sbjct: 340 ETAIQVFHEMPE-KDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAA 398

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C+HAG V+EG  HF SM + YGI+P IEH+  LVDI+GR GR+ +A +LIK MP  PD+ 
Sbjct: 399 CSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQF 458

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
           V G LLGACR+H N+E A+ AA+ L++++P +S  YVLL N+Y    +W++A   R LM 
Sbjct: 459 VLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMA 518

Query: 561 SNNIKKPTGYSWVD 574
              ++KP G S ++
Sbjct: 519 ERGMRKPPGCSQIE 532



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 47/221 (21%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER--------------- 58
           AR LFD+  ++++ SWN+MI+G++        EEA  LF  M  +               
Sbjct: 241 ARDLFDKAQEKNLFSWNIMINGHVEDSN---YEEALLLFREMQTKGIKGDKVTMASLLLA 297

Query: 59  ------------------------DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
                                   D      ++  YAK G +E A+++F+ MP ++V++W
Sbjct: 298 CTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTW 357

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGS 150
            A+I G    G   NA+++FD M  +    D+ +   +++     G +DE         S
Sbjct: 358 TALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHF-NSMS 416

Query: 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
              G +  +  Y  L+   G+ GR+ EA +L   +P+  D+
Sbjct: 417 DTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQ 457



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 130/293 (44%), Gaps = 26/293 (8%)

Query: 11  MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN-----T 65
           +  ARK+FD+M  + VVSW  MI  +          EA  LFD M + + V  N      
Sbjct: 136 LVSARKVFDKMEDKTVVSWATMIGVHAQWDQPN---EAVRLFDRMMKSENVKPNEVTLVN 192

Query: 66  VISGYAKTGEMEEALRLFNSMP----ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
           V++  A+  ++    R+   +      R+VV    ++  + + G V  A + FD+   ++
Sbjct: 193 VLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKN 252

Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
             S + +++G +++   +EA  +  +  ++   G+ +  A  +L++     G +E  + L
Sbjct: 253 LFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMA--SLLLACTHLGALELGKWL 310

Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241
              I           R   ++    +++  YAK G + +A ++F +M E+D  +W  +I 
Sbjct: 311 HAYIKKQ--------RIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALIL 362

Query: 242 GYIHVLDMEEASNLF----VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRM 290
           G       E A   F    +K   PD +T+  +++  +  G ++  +  F  M
Sbjct: 363 GLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSM 415



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 124/303 (40%), Gaps = 39/303 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQ----RDVVSWNVMISGYISSRGSGFLEEARYLFDIMP 56
           +++   + R++A  +++ + + +    R VV   V++  Y      G ++ AR LFD   
Sbjct: 193 VLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKC---GCVQLARDLFDKAQ 249

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E++  +WN +I+G+ +    EEAL LF  M  + +      ++  L       A+E    
Sbjct: 250 EKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKW 309

Query: 117 MPGR--------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           +           D A  +ALV    + G ++ A +V        +  E  V  +  LI+G
Sbjct: 310 LHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFH------EMPEKDVMTWTALILG 363

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
               G+ E A + FD++ +           K + +++  ++   + AG V      F  M
Sbjct: 364 LAMCGQAENALQYFDEMHIK--------GVKPDAITFVGVLAACSHAGFVDEGISHFNSM 415

Query: 229 LERDTFSWNTMISGYIHVLD-------MEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNL 280
              DT+     I  Y  ++D       + EA  L   MP  PD      ++      GNL
Sbjct: 416 --SDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNL 473

Query: 281 ELA 283
           E A
Sbjct: 474 EAA 476


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 176/551 (31%), Positives = 299/551 (54%), Gaps = 42/551 (7%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L  A  +F+ + E + + WNT+  G+A + +   AL L+  M +  ++         L++
Sbjct: 38  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 97

Query: 105 GDVANAIEFFDRMPGR--------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
              + A     ++ G         D    ++L+S  +QNG L++A +V  +   R     
Sbjct: 98  CAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR----- 152

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D+V +Y  LI GY  +G +  A+K+FD+IP+            +++VSWN+MI  YA+ G
Sbjct: 153 DVV-SYTALITGYASKGYIASAQKMFDEIPI------------KDVVSWNAMISGYAETG 199

Query: 217 DVVSAREIFEQMLERDTF-SWNTMISGYIHVLDMEEASNLFVKMPHP---------DTLT 266
           +   A E+F++M++ +     +TM+S  +     + AS    +  H          +   
Sbjct: 200 NNKEALELFKEMMKTNVRPDESTMVS--VVSACAQSASIELGRQVHSWIDDHGFGSNLKI 257

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
            NA++  Y + G +E A   F+ +  K+++SWN++I G      Y+ A+ LF +M   GE
Sbjct: 258 VNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 317

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT---VIPDVPINNALITMYARCGAIVEA 383
            P+  T  SIL   + +  + +G  IH  + K    V        +LI MYA+CG I  A
Sbjct: 318 SPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAA 377

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
           + +F+ + L +++ SWNAMI G A HG A  A ++F  MR  ++ P  ITF+ +LSAC+H
Sbjct: 378 QQVFDSI-LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSH 436

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           +G+++ GR  F+SM  +Y I P++EH+  ++D++G  G  ++A ++I  M  EPD  +W 
Sbjct: 437 SGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWC 496

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
           +LL AC++H NVEL +  A+ L+K+EP+N   YVLL N+YA  GRW++  ++R L+    
Sbjct: 497 SLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKG 556

Query: 564 IKKPTGYSWVD 574
           +KK  G S ++
Sbjct: 557 MKKVPGCSSIE 567



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 186/429 (43%), Gaps = 87/429 (20%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+     +IS Y+ +   G LE+AR +FD    RD V++  +I+GYA  G +  A ++F+
Sbjct: 122 DLYVHTSLISMYVQN---GRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFD 178

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            +P ++VVSWNAMISG+ + G+   A+E F  M              +  N   DE+  V
Sbjct: 179 EIPIKDVVSWNAMISGYAETGNNKEALELFKEM--------------MKTNVRPDESTMV 224

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
                              +++    Q   +E  R++   I    D G     F  N+  
Sbjct: 225 -------------------SVVSACAQSASIELGRQVHSWID---DHG-----FGSNLKI 257

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----P 260
            N++I  Y K G+V +A  +FE +  +D  SWNT+I GY H+   +EA  LF +M     
Sbjct: 258 VNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 317

Query: 261 HPDTLT------------------W-------------------NAMVSGYAQIGNLELA 283
            P+ +T                  W                    +++  YA+ G++E A
Sbjct: 318 SPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAA 377

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F  +  ++L SWN+MI G   +     A  +F +M+    +PD  TF  +LS  S  
Sbjct: 378 QQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 437

Query: 344 VDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
             L LG  I + + +   + P +     +I +    G   EA  +   M++  + V W +
Sbjct: 438 GMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCS 497

Query: 402 MIGGCASHG 410
           ++  C  HG
Sbjct: 498 LLKACKMHG 506



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 164/350 (46%), Gaps = 29/350 (8%)

Query: 220 SAREIFEQMLERDTFSWNTMISGYI-------HVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           S R I  QM++    + N  +S  I       H   +  A ++F  +  P+ L WN M  
Sbjct: 2   SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61

Query: 273 GYAQIGNLELALDFFKRMPQ----KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           G+A   +   AL  +  M       N  ++  ++  C  +K +    ++   +   G   
Sbjct: 62  GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121

Query: 329 DRHTFSSILSM--SSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARII 386
           D +  +S++SM   +G ++        ++  ++   DV    ALIT YA  G I  A+ +
Sbjct: 122 DLYVHTSLISMYVQNGRLE-----DARKVFDQSSHRDVVSYTALITGYASKGYIASAQKM 176

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+E+  +K+VVSWNAMI G A  G   EALELFK M    V P   T +SV+SACA +  
Sbjct: 177 FDEIP-IKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSAS 235

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +E GRQ   S ++++G    ++   +L+D+  + G +E A  L +G+ ++ D   W  L+
Sbjct: 236 IELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVISWNTLI 293

Query: 507 GACRVHNNV--ELAQVAAEALMKVEPENSTPYVLLYNMYA-----DVGRW 549
           G    H N+  E   +  E L   E  N    + +    A     ++GRW
Sbjct: 294 GG-YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRW 342



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 168/396 (42%), Gaps = 69/396 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           +I+GY  +  +A A+K+FDE+P +DVVSWN MISGY     +G  +EA  LF      ++
Sbjct: 160 LITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAE---TGNNKEALELFKEMMKTNV 216

Query: 55  MPE--------------------RDCVTW-------------NTVISGYAKTGEMEEALR 81
            P+                    R   +W             N +I  Y K GE+E A  
Sbjct: 217 RPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACG 276

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGE 137
           LF  +  ++V+SWN +I G+        A+  F  M       +  ++ +++      G 
Sbjct: 277 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGA 336

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           ++    + V    R  G  +      +LI  Y + G +E A+++FD I            
Sbjct: 337 IEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSI------------ 384

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
             R++ SWN+MI  +A  G   +A +IF +M    +E D  ++  ++S   H   ++   
Sbjct: 385 LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGR 444

Query: 254 NLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCET 307
           ++F  M       P    +  M+      G  + A +    M  + + V W S++  C+ 
Sbjct: 445 HIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM 504

Query: 308 NKDYE-GAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           + + E G       +++E + P  +   S +  ++G
Sbjct: 505 HGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAG 540


>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Brachypodium distachyon]
          Length = 555

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 162/426 (38%), Positives = 251/426 (58%), Gaps = 20/426 (4%)

Query: 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211
           C G  DLV  +NT++ GY + G + EAR++F+++P            +RN VSW++M+  
Sbjct: 140 CAGVADLV-TWNTMLGGYVKCGEIGEARRVFEQMP------------QRNGVSWSAMVGA 186

Query: 212 YAKAGDVVSAREIFEQM--LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA 269
           YA AG++  ARE+F++M  + R+  SWN+MI+G+     +  A  +F +MP  + ++WN 
Sbjct: 187 YAGAGELDVAREMFDEMPAIGRNVVSWNSMITGFARHGLLPLARKMFDEMPVRNLVSWNT 246

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK-P 328
           MV GYA  G +  A + F RMP+K++VSW  MI+G    + Y   ++LF  MQ E    P
Sbjct: 247 MVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLP 306

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPIN--NALITMYARCGAIVEARI 385
           +  T  S+LS  + +  L  G   H  + K  ++ D   N   ALI MY++CG    A  
Sbjct: 307 NEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVK 366

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           IF  +   KNV +WNA+I G A +G    ++++F+ MR     P  ITF+ VL+ACAH G
Sbjct: 367 IFHSLDQ-KNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGG 425

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           LV+EGR+ F+SM +  G++P  +H+  +VD++GR G LE+A +LI+ MP  PD  + GAL
Sbjct: 426 LVDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRAGLLEEAEELIRSMPMVPDVMILGAL 485

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           LGACR+H  V++A      ++ +  + S  +VL+ ++YA  G+W DA   R +++   I 
Sbjct: 486 LGACRMHKRVDVAARVQNEILGLSTQQSGCHVLISDIYAAAGKWADALYARGVLQKFGIS 545

Query: 566 KPTGYS 571
           K  G S
Sbjct: 546 KLRGSS 551



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 207/403 (51%), Gaps = 41/403 (10%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPE-RDCVTWNTVISGYAKTGEMEEALRLF 83
           DV   N +++ Y + R +  + E   +FD      D VTWNT++ GY K GE+ EA R+F
Sbjct: 113 DVFVVNTLLAMYAAFRDTRSMRE---VFDSCAGVADLVTWNTMLGGYVKCGEIGEARRVF 169

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--GRDSASLSALVSGLIQNGELDEA 141
             MP RN VSW+AM+  +   G++  A E FD MP  GR+  S +++++G  ++G L  A
Sbjct: 170 EQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGRNVVSWNSMITGFARHGLLPLA 229

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            ++  +   R     +LV ++NT++ GY   G + +AR+LFD++P            +++
Sbjct: 230 RKMFDEMPVR-----NLV-SWNTMVRGYAVNGEMNDARELFDRMP------------EKD 271

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN-----TMISGYIHVLDMEEA--SN 254
           +VSW  MI  YA+A       E+F  M        N     +++S   H+  +EE   ++
Sbjct: 272 VVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAH 331

Query: 255 LFV---KMPHPDTLTWN-AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
            F+   KM          A++  Y++ G  +LA+  F  + QKN+ +WN++I G   N D
Sbjct: 332 AFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGD 391

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKT--VIPDVPI 366
              +I +F QM+  GEKP+  TF  +L+  +  G+VD   G +  Q +  T  V P+   
Sbjct: 392 VRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVD--EGRRCFQSMASTCGVQPEAKH 449

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
              ++ M  R G + EA  +   M ++ +V+   A++G C  H
Sbjct: 450 YGCMVDMLGRAGLLEEAEELIRSMPMVPDVMILGALLGACRMH 492



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 179/365 (49%), Gaps = 63/365 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--R 58
           M+ GYVK  E+ +AR++F++MPQR+ VSW+ M+  Y    G+G L+ AR +FD MP   R
Sbjct: 152 MLGGYVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYA---GAGELDVAREMFDEMPAIGR 208

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           + V+WN++I+G+A+ G +  A ++F+ MP RN+VSWN M+ G+  NG++ +A E FDRMP
Sbjct: 209 NVVSWNSMITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMP 268

Query: 119 GRDSASLSALVSGLIQ------NGELDEAAR--------------VLVKCGSRCDGGED- 157
            +D  S + ++SG  Q        EL  A +              VL  C       E  
Sbjct: 269 EKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGR 328

Query: 158 ------------LVRAYN---TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
                       L   +N    LI  Y + GR + A K+F  +             ++N+
Sbjct: 329 WAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLD------------QKNV 376

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVK 258
            +WN++I   A  GDV S+ ++FEQM       +  ++  +++   H   ++E    F  
Sbjct: 377 SAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQS 436

Query: 259 MP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ-KNLVSWNSMIAGCETNKDYE 312
           M       P+   +  MV    + G LE A +  + MP   +++   +++  C  +K  +
Sbjct: 437 MASTCGVQPEAKHYGCMVDMLGRAGLLEEAEELIRSMPMVPDVMILGALLGACRMHKRVD 496

Query: 313 GAIKL 317
            A ++
Sbjct: 497 VAARV 501



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 13/213 (6%)

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
           +F   P       N +I    T+     A   F  +   G+ PDR TF S+L  +S +  
Sbjct: 34  YFPLFPSSCTFLHNLLIRASATSPSPRLAFAAFSSILRSGDTPDRFTFPSLLKSASRLAS 93

Query: 346 L-HLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
               G Q+H Q V + ++ DV + N L+ MYA        R +F+    + ++V+WN M+
Sbjct: 94  FPRTGAQVHAQAVRRGLLVDVFVVNTLLAMYAAFRDTRSMREVFDSCAGVADLVTWNTML 153

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTY--ITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           GG    G      E+ ++ R F+ +P    +++ +++ A A AG ++  R+ F  M    
Sbjct: 154 GGYVKCG------EIGEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMP--- 204

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
            I   +  + S++    RHG L  A  +   MP
Sbjct: 205 AIGRNVVSWNSMITGFARHGLLPLARKMFDEMP 237


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 191/620 (30%), Positives = 295/620 (47%), Gaps = 104/620 (16%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG------------- 105
           D    N +I+ Y K G ++ A+++F+ MP RN+VSWN++ISGF +NG             
Sbjct: 65  DVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMM 124

Query: 106 --------DVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV---LVKCGSRC-- 152
                   D+A  +             +   + GL     L E  RV   LV   S+C  
Sbjct: 125 AGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGY 184

Query: 153 ---------DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR------ 197
                            ++NT+I G   +G + EA  LF ++ +  D     V       
Sbjct: 185 LTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILP 244

Query: 198 ----------------------FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
                                 F+ + +  N  +  YAK G ++ A  +F  M  +   S
Sbjct: 245 ACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNS 304

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLE---------- 281
           WN +I G     D  +A NL+++M +    PD  T  +++   A + +L           
Sbjct: 305 WNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVL 364

Query: 282 ---LALD----------------------FFKRMPQKNLVSWNSMIAGCETNKDYEGAIK 316
              L +D                       F  M +K+ VSWN+MI+G   N   E A+ 
Sbjct: 365 RHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALI 424

Query: 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYA 375
           LF ++  +G +P      S+L   S    L LG + H    K ++  DV +  + I MYA
Sbjct: 425 LFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYA 484

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           + G I E+R +F+ +K  K++ SWNA+I     HG   E++ELF+ MR    +P   TFI
Sbjct: 485 KSGCIKESRSVFDGLKN-KDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFI 543

Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
            +L+ C+HAGLVEEG ++F  M N +GIEP++EH+A ++D++GR GRL+DA+ L+  MP 
Sbjct: 544 GILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPE 603

Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
           +PD  VW +LL  CR    +E+ Q+ AE L+++EP+N   YV L N+YA  GRWDD   V
Sbjct: 604 QPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRV 663

Query: 556 RLLMKSNNIKKPTGYSWVDF 575
           R ++K   ++K  G SW++ 
Sbjct: 664 RQMIKDIGLQKDAGCSWIEL 683



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 117/273 (42%), Gaps = 58/273 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-------- 52
           ++S Y+   E + AR LFD M ++  VSWN MISGY     +G  E+A  LF        
Sbjct: 378 LLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGY---SQNGLPEDALILFRKLVSDGF 434

Query: 53  ---DIM-----------------PERDCVTWN-----------TVISGYAKTGEMEEALR 81
              DI                   E  C               + I  YAK+G ++E+  
Sbjct: 435 QPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRS 494

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGE 137
           +F+ +  +++ SWNA+I+ +  +GD   +IE F+RM       D  +   +++     G 
Sbjct: 495 VFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGL 554

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           ++E  +   +      G E  +  Y  ++   G+ GR+++A +L  ++P   D       
Sbjct: 555 VEEGLKYFNEM-QNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSR----- 608

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
                  W+S++      G++   + + E++LE
Sbjct: 609 ------VWSSLLSFCRNFGELEIGQIVAEKLLE 635



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 105/251 (41%), Gaps = 32/251 (12%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           SG ++E+R +FD +  +D  +WN +I+ Y   G+ EE++ LF  M     +       G 
Sbjct: 486 SGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGI 545

Query: 102 L----QNGDVANAIEFFDRMPGRDSAS-----LSALVSGLIQNGELDEAARVLVKCGSRC 152
           L      G V   +++F+ M             + ++  L + G LD+A R++ +   + 
Sbjct: 546 LTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQP 605

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVE----EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
           D      R +++L+      G +E     A KL +  P N +          N VS +++
Sbjct: 606 DS-----RVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVE----------NYVSLSNL 650

Query: 209 IMCYAKAGDVVSAREIFEQM-LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW 267
                +  DV   R++ + + L++D       + G +H      A +  +      ++TW
Sbjct: 651 YAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSF---VAGDNLLPQSKEMSMTW 707

Query: 268 NAMVSGYAQIG 278
             +     +IG
Sbjct: 708 RKLEKKMCKIG 718


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 192/629 (30%), Positives = 316/629 (50%), Gaps = 76/629 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           ++S Y     +  A  +F  M QRD V++N +I+G +S  G G  E+A  LF  M     
Sbjct: 289 LVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING-LSQCGYG--EKAMELFKRMHLDGL 345

Query: 56  -PERD--------CVTWNTVISG-------------------------YAKTGEMEEALR 81
            P+ +        C    T+  G                         YAK  ++E AL 
Sbjct: 346 EPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALD 405

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNGE 137
            F      NVV WN M+  +    D+ N+   F +M   +      +  +++   I+ G+
Sbjct: 406 YFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGD 465

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAY--NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           L+   ++     S+       + AY  + LI  Y + G+++ A  +              
Sbjct: 466 LELGEQI----HSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL------------- 508

Query: 196 VRFK-RNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME 250
           +RF  +++VSW +MI  Y +      A   F QML+R    D       +S    +  ++
Sbjct: 509 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 568

Query: 251 EASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           E   +  +        D    NA+V+ Y++ G +E +   F++    + ++WN++++G +
Sbjct: 569 EGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQ 628

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVP 365
            + + E A+++F++M  EG   +  TF S +  +S   ++  G Q+H ++TKT    +  
Sbjct: 629 QSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETE 688

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           + NALI+MYA+CG+I +A   F E+   KN VSWNA+I   + HGF +EAL+ F  M   
Sbjct: 689 VCNALISMYAKCGSISDAEKQFLEVST-KNEVSWNAIINAYSKHGFGSEALDSFDQMIHS 747

Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            V P ++T + VLSAC+H GLV++G  +F+SM +EYG+ P+ EH+  +VD++ R G L  
Sbjct: 748 NVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSR 807

Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
           A + I+ MP +PD  VW  LL AC VH N+E+ + AA  L+++EPE+S  YVLL N+YA 
Sbjct: 808 AKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAV 867

Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             +WD  +  R  MK   +KK  G SW++
Sbjct: 868 SKKWDARDLTRQKMKEKGVKKEPGQSWIE 896



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 150/569 (26%), Positives = 248/569 (43%), Gaps = 77/569 (13%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y+ + ++  A K+FDEMP+R + +WN MI   ++SR    + E   LF  M   +     
Sbjct: 90  YLFKGDLYGAFKVFDEMPERTIFTWNKMIKE-LASRN--LIGEVFGLFVRMVSENVTPNE 146

Query: 65  TVISGYAKTG----------EMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
              SG  +            E   A  L+  +    VV  N +I  + +NG V  A   F
Sbjct: 147 GTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVC-NPLIDLYSRNGFVDLARRVF 205

Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
           D +  +D +S  A++SGL +N    EA R+   C     G      A+++++    +   
Sbjct: 206 DGLRLKDHSSWVAMISGLSKNECEAEAIRLF--CDMYVLGIMPTPYAFSSVLSACKKIES 263

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
           +E   +L   +          + F  +    N+++  Y   G+++SA  IF  M +RD  
Sbjct: 264 LEIGEQLHGLVL--------KLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAV 315

Query: 235 SWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSG----------------- 273
           ++NT+I+G       E+A  LF +M      PD+ T  ++V                   
Sbjct: 316 TYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYT 375

Query: 274 ------------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
                             YA+  ++E ALD+F     +N+V WN M+       D   + 
Sbjct: 376 TKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSF 435

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMY 374
           ++F QMQ+E   P+++T+ SIL     + DL LG QIH  + KT    +  + + LI MY
Sbjct: 436 RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMY 495

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
           A+ G +  A  I       K+VVSW  MI G   + F  +AL  F+ M    +    +  
Sbjct: 496 AKLGKLDTAWDILIRFA-GKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGL 554

Query: 435 ISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
            + +SACA    ++EG+Q H ++ V+  G    +    +LV +  R G++E++      +
Sbjct: 555 TNAVSACAGLQALKEGQQIHAQACVS--GFSSDLPFQNALVTLYSRCGKIEESY-----L 607

Query: 494 PFEP----DKAVWGALLGACRVHNNVELA 518
            FE     D   W AL+   +   N E A
Sbjct: 608 AFEQTEAGDNIAWNALVSGFQQSGNNEEA 636


>gi|224127907|ref|XP_002320193.1| predicted protein [Populus trichocarpa]
 gi|222860966|gb|EEE98508.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 226/371 (60%), Gaps = 11/371 (2%)

Query: 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTW 267
           Y K   + S++ IF+ M  ++  +WN++ISGY      + A  L  +M      PD +TW
Sbjct: 2   YVKNDCLTSSQAIFDNMKNKNIVAWNSLISGYSFKGHFDHAKRLLNRMKEEGIKPDLITW 61

Query: 268 NAMVSGYAQIGNLELALDFFKRMP----QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
           N++V+GY+  G+ + AL     +       N+VSW ++I+GC  N +Y  +I+ F+QMQ 
Sbjct: 62  NSLVAGYSMRGHTKEALALIHDIKISGLTPNVVSWTALISGCSQNGNYSESIEAFVQMQE 121

Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVE 382
           EG KP+  T SS+L    G+  L  G +IH + + K+ I D+ +  ALI  Y++ G +  
Sbjct: 122 EGIKPNSATISSLLRTCGGLSLLQKGKEIHCLSIRKSFIEDLYVATALIDTYSKSGDLES 181

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442
           A  +F   +  K + SWN MI G A +G   E + L   M+   +LP  ITF ++LS C 
Sbjct: 182 AHKVFWSAE--KTLASWNCMIMGFAINGCGREVIALLDGMQRAGILPDAITFTALLSGCK 239

Query: 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502
           ++GLVEEG + F  M N+YGI+P IEH++ + D++GR G L++A D I+ MP +PD +VW
Sbjct: 240 NSGLVEEGWKCFDMMSNDYGIKPTIEHYSCMADLLGRAGYLDEAWDFIQTMPIKPDASVW 299

Query: 503 GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562
           GA+LG+CR+H N+E A++AA+ L K+EP NS  YVL+ ++YA   RW+D + ++ LM + 
Sbjct: 300 GAMLGSCRIHGNIEFAEIAAKELFKLEPYNSANYVLMLSLYAMSNRWEDVDRIKDLMDTR 359

Query: 563 NIKKPTGYSWV 573
            IK    +SW+
Sbjct: 360 GIKPRQVWSWI 370



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 156/334 (46%), Gaps = 44/334 (13%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER----DC 60
           YVK   +  ++ +FD M  +++V+WN +ISGY      G  + A+ L + M E     D 
Sbjct: 2   YVKNDCLTSSQAIFDNMKNKNIVAWNSLISGY---SFKGHFDHAKRLLNRMKEEGIKPDL 58

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMP----ARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           +TWN++++GY+  G  +EAL L + +       NVVSW A+ISG  QNG+ + +IE F +
Sbjct: 59  ITWNSLVAGYSMRGHTKEALALIHDIKISGLTPNVVSWTALISGCSQNGNYSESIEAFVQ 118

Query: 117 MPGRDSASLSALVSGLIQNG---ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           M        SA +S L++      L +  + +     R    EDL  A   LI  Y + G
Sbjct: 119 MQEEGIKPNSATISSLLRTCGGLSLLQKGKEIHCLSIRKSFIEDLYVA-TALIDTYSKSG 177

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--LER 231
            +E A K+F                ++ + SWN MIM +A  G     RE+   +  ++R
Sbjct: 178 DLESAHKVF-------------WSAEKTLASWNCMIMGFAING---CGREVIALLDGMQR 221

Query: 232 -----DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLE 281
                D  ++  ++SG  +   +EE    F  M +     P    ++ M     + G L+
Sbjct: 222 AGILPDAITFTALLSGCKNSGLVEEGWKCFDMMSNDYGIKPTIEHYSCMADLLGRAGYLD 281

Query: 282 LALDFFKRMPQKNLVS-WNSMIAGCETNKDYEGA 314
            A DF + MP K   S W +M+  C  + + E A
Sbjct: 282 EAWDFIQTMPIKPDASVWGAMLGSCRIHGNIEFA 315



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 178/422 (42%), Gaps = 84/422 (19%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
           Y K   +  +  +F++M  +N+V+WN++ISG+   G   +A    +RM            
Sbjct: 2   YVKNDCLTSSQAIFDNMKNKNIVAWNSLISGYSFKGHFDHAKRLLNRMK----------- 50

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
                    +E  +             DL+  +N+L+ GY  RG  +EA  L   I ++ 
Sbjct: 51  ---------EEGIK------------PDLI-TWNSLVAGYSMRGHTKEALALIHDIKIS- 87

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY------ 243
                      N+VSW ++I   ++ G+   + E F QM E      +  IS        
Sbjct: 88  -------GLTPNVVSWTALISGCSQNGNYSESIEAFVQMQEEGIKPNSATISSLLRTCGG 140

Query: 244 ---------IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
                    IH L + ++   F++    D     A++  Y++ G+LE A   F    +K 
Sbjct: 141 LSLLQKGKEIHCLSIRKS---FIE----DLYVATALIDTYSKSGDLESAHKVFWS-AEKT 192

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS--MSSGIVDLHLGMQI 352
           L SWN MI G   N      I L   MQ  G  PD  TF+++LS   +SG+V+   G + 
Sbjct: 193 LASWNCMIMGFAINGCGREVIALLDGMQRAGILPDAITFTALLSGCKNSGLVE--EGWKC 250

Query: 353 HQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
             M++    + P +   + +  +  R G + EA    + M +  +   W AM+G C  HG
Sbjct: 251 FDMMSNDYGIKPTIEHYSCMADLLGRAGYLDEAWDFIQTMPIKPDASVWGAMLGSCRIHG 310

Query: 411 ---FA-TEALELFKSMRSFKVLPTY--ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
              FA   A ELFK       L  Y    ++ +LS  A +   E+     K +++  GI+
Sbjct: 311 NIEFAEIAAKELFK-------LEPYNSANYVLMLSLYAMSNRWED-VDRIKDLMDTRGIK 362

Query: 465 PR 466
           PR
Sbjct: 363 PR 364



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 163/358 (45%), Gaps = 51/358 (14%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMISG 100
           L  ++ +FD M  ++ V WN++ISGY+  G  + A RL N M       ++++WN++++G
Sbjct: 8   LTSSQAIFDNMKNKNIVAWNSLISGYSFKGHFDHAKRLLNRMKEEGIKPDLITWNSLVAG 67

Query: 101 FLQNGDVANAIEFFD--RMPGR--DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
           +   G    A+      ++ G   +  S +AL+SG  QNG   E+    V+     +G +
Sbjct: 68  YSMRGHTKEALALIHDIKISGLTPNVVSWTALISGCSQNGNYSESIEAFVQMQE--EGIK 125

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
                 ++L+   G    +++ ++      ++C     +  F  ++    ++I  Y+K+G
Sbjct: 126 PNSATISSLLRTCGGLSLLQKGKE------IHCLSIRKS--FIEDLYVATALIDTYSKSG 177

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGY---------IHVLD-MEEASNLFVKMPHPDTLT 266
           D+ SA ++F    E+   SWN MI G+         I +LD M+ A  L      PD +T
Sbjct: 178 DLESAHKVFWSA-EKTLASWNCMIMGFAINGCGREVIALLDGMQRAGIL------PDAIT 230

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQ----KNLVSWNSMIAGCETNKDYEGAIKLFIQ-M 321
           + A++SG    G +E     F  M      K  +   S +A       Y      FIQ M
Sbjct: 231 FTALLSGCKNSGLVEEGWKCFDMMSNDYGIKPTIEHYSCMADLLGRAGYLDEAWDFIQTM 290

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA----LITMYA 375
            +   KPD   + ++L    G   +H  ++  ++  K +    P N+A    ++++YA
Sbjct: 291 PI---KPDASVWGAML----GSCRIHGNIEFAEIAAKELFKLEPYNSANYVLMLSLYA 341


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 191/601 (31%), Positives = 293/601 (48%), Gaps = 111/601 (18%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRG--SGFLEEARYLFD---------------IMP 56
           ARK+FD++PQ ++ SWN++I    +S       L   R L D                + 
Sbjct: 192 ARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVA 251

Query: 57  ERDC--------------------VTWNTVISGYAKTGEMEEALRLFNSMPARN--VVSW 94
           ER C                       N++I  YA  G ++ A  +F  +   N  +VSW
Sbjct: 252 ERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSW 311

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
           N+M++GF+Q G    A++ F+RM                +N  +   A  +V   S C  
Sbjct: 312 NSMVTGFVQGGYPDKALDLFERM----------------RNEGVHPNAVTMVSVMSACAK 355

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
             +L     TL             RK+ D I    DR E       N+   N+ I  + K
Sbjct: 356 TMNL-----TL------------GRKVCDYI----DRNE----MMMNLNVCNATIDMFVK 390

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
            G+V  AR +F+ M +RD  SW T+I GY  + +   A ++F  MP  D   WN ++SGY
Sbjct: 391 CGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGY 450

Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
            Q G  + AL  F+ +                             Q+   G +PD+ T  
Sbjct: 451 EQSGRPKEALAIFREL-----------------------------QLTKSGARPDQVTLL 481

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLL 393
           S LS  + +  + +G  IH  + K  I  +  +  +LI MY++ G + +A  +F  +   
Sbjct: 482 STLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIG-N 540

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
           K+V  W+AMI G A HG    A+ELF  M+  +V P  +TF ++L AC+H+GLV+EG++ 
Sbjct: 541 KDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRL 600

Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
           F  M   YG+ P+ +H++ +VD++GR G LE+A+  I+GMP  P  +VWGALLGAC +H 
Sbjct: 601 FDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHG 660

Query: 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           N+ELA+ A   L+++EP N   YVLL N+YA  G W+  +E+R  M+ + +KK TG S +
Sbjct: 661 NLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSI 720

Query: 574 D 574
           +
Sbjct: 721 E 721



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 102/184 (55%), Gaps = 3/184 (1%)

Query: 272 SGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDR 330
           + ++    L+ A   F ++PQ NL SWN +I    T+ D   ++ +FI+M  +    P++
Sbjct: 181 AAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNK 240

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEE 389
            TF  ++   +      +G  +H M  KT    DV + N+LI  YA CG +  A ++FE 
Sbjct: 241 FTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEM 300

Query: 390 MK-LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
           ++   K++VSWN+M+ G    G+  +AL+LF+ MR+  V P  +T +SV+SACA    + 
Sbjct: 301 IEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLT 360

Query: 449 EGRQ 452
            GR+
Sbjct: 361 LGRK 364


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 176/490 (35%), Positives = 265/490 (54%), Gaps = 45/490 (9%)

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVK 147
           A++V+  NA++  +  +  +A+A   FD MP RD  S + LV G  + G  DEA RV   
Sbjct: 173 AQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVF-- 230

Query: 148 CGSRCDGGEDLVRAYNTLIV-GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
           C     GG          +V   GQ G +   R ++  +    D G G     R++   N
Sbjct: 231 CRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYV---ADGGVG-----RSVNLEN 282

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLT 266
           ++I  + K G   SARE+F+ M  +D +S                               
Sbjct: 283 ALIDMFGKFGCAASAREVFDSMAVKDVYS------------------------------- 311

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
           W  MV+ YA+ G+LE A   F  MP++N VSW+ MIA        E A++LF  M  EG 
Sbjct: 312 WTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGV 371

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQ--MVTKTVIPDVPINNALITMYARCGAIVEAR 384
           +P      S+LS  + +  L LG  I+   +++   +  V + NA I +YA+CG    A 
Sbjct: 372 EPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAAS 431

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F EM   +NVVSWN+MI   A HG + E L LF+ ++   ++P  ITF+ +LSAC+H+
Sbjct: 432 KLFAEMAE-RNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHS 490

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           GLV EGR++FK M   YGIEP+ EH+A ++D++G+ G LE+A ++ KGMP E D+A WGA
Sbjct: 491 GLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGA 550

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           LL ACR++ NVE+ + AA+ L+++ P +S  YVL+  +YA   +WD    +R+LM+   +
Sbjct: 551 LLNACRMYGNVEIGEFAADKLVQLNPLDSGIYVLMSQIYASKNKWDQVKILRVLMRERGV 610

Query: 565 KKPTGYSWVD 574
           KK  G S ++
Sbjct: 611 KKNPGCSSIE 620



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 117/430 (27%), Positives = 179/430 (41%), Gaps = 87/430 (20%)

Query: 24  RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
           + V+  N ++  Y + R    L  AR LFD MP+RD V+W T++ GYA+ G  +EA R+F
Sbjct: 174 QSVLVGNALVHFYANHRS---LAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVF 230

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
             M          +++G LQ  +V                +L A+VS + Q G L     
Sbjct: 231 CRM----------VVAGGLQPNEV----------------TLVAVVSAMGQMGLLAFGRM 264

Query: 144 VLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
           V        DGG    V   N LI  +G+ G    AR++FD + V            +++
Sbjct: 265 VYRYVA---DGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAV------------KDV 309

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP 262
            SW +M+  YAK GD+ SA  +F+ M  R+  SW+ MI+ Y      EEA  LF  M   
Sbjct: 310 YSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEE 369

Query: 263 ----------------------DTLTW------------------NAMVSGYAQIGNLEL 282
                                 D   W                  NA +  YA+ G+ + 
Sbjct: 370 GVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDA 429

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS-- 340
           A   F  M ++N+VSWNSMI     +   E  ++LF Q++     PD  TF  +LS    
Sbjct: 430 ASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSH 489

Query: 341 SGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
           SG+V           +   + P       +I +  + G + EA  + + M +  +   W 
Sbjct: 490 SGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWG 549

Query: 401 AMIGGCASHG 410
           A++  C  +G
Sbjct: 550 ALLNACRMYG 559



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 148/331 (44%), Gaps = 50/331 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           ++  Y   R +A AR LFDEMP RDVVSW  ++ GY                        
Sbjct: 182 LVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQP 241

Query: 37  --------ISSRGS-GFLEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEALRLF 83
                   +S+ G  G L   R ++  + +    R     N +I  + K G    A  +F
Sbjct: 242 NEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVF 301

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
           +SM  ++V SW  M++ + + GD+ +A   FD MP R++ S S +++   Q  + +EA R
Sbjct: 302 DSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVR 361

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
           +        +G E +     +++    Q G ++  R ++D   ++     G      N+ 
Sbjct: 362 LFKAMIE--EGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVIS-----GKAVLTVNL- 413

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-- 261
             N+ I  YAK GD  +A ++F +M ER+  SWN+MI  +      EE   LF ++    
Sbjct: 414 -GNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTC 472

Query: 262 --PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
             PD +T+  ++S  +  G +     +FK M
Sbjct: 473 IVPDEITFLGLLSACSHSGLVSEGRRYFKEM 503



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 349 GMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           G  +H +  K   V   V + NAL+  YA   ++  AR +F+EM   ++VVSW  ++ G 
Sbjct: 159 GEGVHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMP-DRDVVSWTTLVDGY 217

Query: 407 ASHGFATEALELFKSMRSFKVL-PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
           A  G A EA  +F  M     L P  +T ++V+SA    GL+  GR  ++  V + G+  
Sbjct: 218 ARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYR-YVADGGVGR 276

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
            +    +L+D+ G+ G    A ++   M  + D   W  ++ A
Sbjct: 277 SVNLENALIDMFGKFGCAASAREVFDSMAVK-DVYSWTTMVNA 318


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 193/633 (30%), Positives = 321/633 (50%), Gaps = 83/633 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQ-RDVVSWNVMISGYISS----------RG-------- 41
           +I+ Y K   +  A ++F+ M   RDV SWN MISG + +          RG        
Sbjct: 205 LIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSM 264

Query: 42  -----SGFLEEARYLFDIMPERDC------------VTWNTVISGYAKTGEMEEALRLFN 84
                 G L+    L  +   R+             +  N ++  Y K G ++ ALR+F 
Sbjct: 265 NSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMYTKCGRVDSALRVFR 324

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVS-----GLIQN 135
            +  ++ +SWN+M+S ++QNG  A AIEF   M       D A + +L S     G + N
Sbjct: 325 EIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLN 384

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           G+   A  +  +  S    G       NTL+  Y +   +E +  +FD++ +        
Sbjct: 385 GKEVHAYAIKQRLDSDTQVG-------NTLMDMYMKCRYIEYSAHVFDRMRI-------- 429

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
               ++ +SW ++I CYA++   + A EIF +  +++    + M+ G I    +E  S L
Sbjct: 430 ----KDHISWTTIITCYAQSSRHIEALEIFREA-QKEGIKVDPMMIGSI----LEACSGL 480

Query: 256 ----FVKMPHP--------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
                 K  H         D +  N ++  Y + G +  +L  F+ + QK++V+W SMI 
Sbjct: 481 ETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMIN 540

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIP 362
               +     A+ LF +MQ    +PD     SIL    G+  L  G ++H  ++ +    
Sbjct: 541 CYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHM 600

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           +  I ++L+ MY+ CG++  A  +F  +K  K++V W AMI     HG   +A++LFK M
Sbjct: 601 EEAIVSSLVDMYSGCGSLSGALKVFNAVKC-KDMVLWTAMINATGMHGHGKQAIDLFKRM 659

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
               V P +++F+++L AC+H+ LV EG+ +   M++ Y +EP  EH+A +VD++GR G+
Sbjct: 660 LQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQ 719

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
            E+A + IK MP +P   VW +LLGACRVH N ELA VAA  L+++EP+N   YVL+ N+
Sbjct: 720 TEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNV 779

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           +A++G+W++A EVR  +    ++K    SW++ 
Sbjct: 780 FAEMGKWNNAKEVRARISERGLRKDPACSWIEI 812



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 161/594 (27%), Positives = 269/594 (45%), Gaps = 80/594 (13%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS----------------SRGSGFLEEA 48
           Y K   +A AR LFD M  R V SWN +I  Y+S                S  SG   + 
Sbjct: 105 YGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDG 164

Query: 49  RYLFDIMP-----------------------ERDCVTWNTVISGYAKTGEMEEALRLFNS 85
             L  ++                        +R     N +I+ YAK G ++ A+R+F  
Sbjct: 165 CTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFEL 224

Query: 86  M-PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN----GELD- 139
           M   R+V SWN+MISG LQNG    A++ F  M     +  S    G++Q      +L+ 
Sbjct: 225 MHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNL 284

Query: 140 --EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
             E    L+K GS  +         N L+V Y + GRV+ A ++F +I            
Sbjct: 285 GRELHAALLKSGSEVN------IQCNALLVMYTKCGRVDSALRVFREID----------- 327

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIH---VLDME 250
            +++ +SWNSM+ CY + G    A E   +ML    + D     ++ S   H   +L+ +
Sbjct: 328 -EKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGK 386

Query: 251 EASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           E     +K     DT   N ++  Y +   +E +   F RM  K+ +SW ++I     + 
Sbjct: 387 EVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSS 446

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA 369
            +  A+++F + Q EG K D     SIL   SG+  + L  Q+H    +  + D+ + N 
Sbjct: 447 RHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNR 506

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           +I +Y  CG +  +  +FE ++  K++V+W +MI   A+ G   EAL LF  M+S  V P
Sbjct: 507 IIDIYGECGEVYHSLKMFETVE-QKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQP 565

Query: 430 TYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
             +  +S+L A      + +G++ H   +   + +E  I   +SLVD+    G L  A+ 
Sbjct: 566 DSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAI--VSSLVDMYSGCGSLSGALK 623

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENSTPYVLLY 540
           +   +  + D  +W A++ A  +H + + A    + +++  V P++ +   LLY
Sbjct: 624 VFNAVKCK-DMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLY 676



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 13/204 (6%)

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI---PDVPINNAL 370
           A++L    Q  G  P +  +  +L + +    +  G+Q+H     T      D  +   L
Sbjct: 43  ALRLLTS-QTPGRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKL 101

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR---SFKV 427
           + MY +CG + +AR++F+ M   + V SWNA+IG   S G A EAL ++++MR   +  V
Sbjct: 102 LFMYGKCGRVADARLLFDGMS-SRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGV 160

Query: 428 LPTYITFISVLSACAHAGLVEEGR--QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
            P   T  SVL A   +G+  +GR       +  ++G++       +L+ +  + G L+ 
Sbjct: 161 APDGCTLASVLKA---SGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDS 217

Query: 486 AMDLIKGMPFEPDKAVWGALLGAC 509
           AM + + M    D A W +++  C
Sbjct: 218 AMRVFELMHDGRDVASWNSMISGC 241


>gi|225463207|ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Vitis vinifera]
          Length = 868

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 189/654 (28%), Positives = 310/654 (47%), Gaps = 108/654 (16%)

Query: 12  AKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE-------------- 57
           + A   F+ +  +DVVSWN +I+G+  ++   F EEA  LF  M +              
Sbjct: 194 SDAYAAFNRIEFKDVVSWNAVIAGFSENK---FTEEAFKLFHAMLKGPIQPNYATIASIL 250

Query: 58  -----------------------------RDCVTWNTVISGYAKTGEMEEALRLFNSMPA 88
                                         D    N+++S Y + G+ME+A  LF +M +
Sbjct: 251 PVCASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKS 310

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELDEAAR 143
           R++VSWNA+I+G+  NG+   A+E F           DS +L +++        L + A+
Sbjct: 311 RDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNL-QVAK 369

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
            +     R  G  +     N L+  Y +    + A + F  I             +++++
Sbjct: 370 GIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMIS------------RKDLI 417

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLE--------------------------RDTFSW- 236
           SWN+++  + ++G       +   ML                           ++T S+ 
Sbjct: 418 SWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYS 477

Query: 237 ---------------NTMISGYIHVLDMEEASNLFVKMPHP-DTLTWNAMVSGYAQIGNL 280
                          N M+  Y    +M+ A N+F  +    + +T N+M+SGY    + 
Sbjct: 478 IRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSH 537

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           + A   F  M + +L +WN M+     N   + A+ LF ++Q +G KPD  T  SIL   
Sbjct: 538 DDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPAC 597

Query: 341 SGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
           + +  +H+  Q H  V +    DV +N A I MY++CG++  A  +F      K++V + 
Sbjct: 598 AHMASVHMLRQCHGYVIRACFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSP-QKDLVMFT 656

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           AM+GG A HG   EAL +F  M    V P ++   +VL AC+HAGLV+EG + F S+   
Sbjct: 657 AMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKV 716

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           +G +P +E +A +VD++ R GR++DA   +  MP E +  +WG LLGACR H+ VEL +V
Sbjct: 717 HGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTHHEVELGRV 776

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            A+ L K+E +N   YV++ N+YA   RWD   E+R LM++  +KKP G SW++
Sbjct: 777 VADHLFKIESDNIGNYVVMSNLYAADARWDGVMEIRRLMRTRELKKPAGCSWIE 830



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 150/608 (24%), Positives = 260/608 (42%), Gaps = 118/608 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS-----------SRGSGFLEEAR 49
           +++ Y K   +    KLF EM QRD V WN+++SG               R    + EA+
Sbjct: 80  LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAK 139

Query: 50  --------------------------YLFDIMPERDCVTWNTVISGYAKTGEM-EEALRL 82
                                     Y+     E   +  N +IS YAK G +  +A   
Sbjct: 140 PNSVTIAIVLPVCARLREDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAA 199

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDS-ASLSALVSGLIQN 135
           FN +  ++VVSWNA+I+GF +N     A + F  M      P   + AS+  + + L +N
Sbjct: 200 FNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEEN 259

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
                   V      R +  ED V   N+L+  Y + G++E+A  LF  +          
Sbjct: 260 AGYRYGKEVHCHVLRRMELVED-VSVINSLMSFYLRIGQMEKAEFLFRNMK--------- 309

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN--TMIS-----GYIHVLD 248
               R++VSWN++I  YA  G+ + A E+F + +  +T   +  T++S      ++H L 
Sbjct: 310 ---SRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQ 366

Query: 249 MEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI-- 302
           + +  + ++ + HP    DT   NA++S YA+    + AL  F  + +K+L+SWN+++  
Sbjct: 367 VAKGIHGYI-IRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDA 425

Query: 303 ---AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
              +GCET+      + L   M  EG +PD  T  +I+   + +  +    + H    + 
Sbjct: 426 FTESGCETH-----LVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRF 480

Query: 360 VI----PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG---------- 405
            +        + N ++  YA+CG +  A  IF  +   +NVV+ N+MI G          
Sbjct: 481 GLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDA 540

Query: 406 ---------------------CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
                                 A + F  +AL LF  ++   + P  +T +S+L ACAH 
Sbjct: 541 YAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHM 600

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
             V   RQ    ++     + R+    + +D+  + G +  A  L    P + D  ++ A
Sbjct: 601 ASVHMLRQCHGYVIRACFNDVRLN--GAFIDMYSKCGSVFGAYKLFLSSP-QKDLVMFTA 657

Query: 505 LLGACRVH 512
           ++G   +H
Sbjct: 658 MVGGFAMH 665



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 104/235 (44%), Gaps = 18/235 (7%)

Query: 311 YEGAIKLFIQMQVE---GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPI 366
           ++ A+ LF++ +V    G KP+    +++L     I  +  G  +H    K   +    +
Sbjct: 18  HDEALSLFLE-RVRCSVGYKPNGQILAALLKSCVAISAIRFGSVLHGYALKLGHVSCQSL 76

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
              L+ +YA+ GA+     +F EM   ++ V WN ++ G A  GF +   E+ +  R+  
Sbjct: 77  CKGLLNLYAKSGALDYCNKLFGEMD-QRDPVIWNIVLSGLA--GFQSHEAEVMRLFRAMH 133

Query: 427 VL----PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
           ++    P  +T   VL  CA   L E+  +   S V + G+E       +L+ +  + G 
Sbjct: 134 MVNEAKPNSVTIAIVLPVCAR--LREDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGL 191

Query: 483 L-EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENST 534
           +  DA      + F+ D   W A++     +   E A     A++K  ++P  +T
Sbjct: 192 VCSDAYAAFNRIEFK-DVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYAT 245



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 12/154 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
            I  Y K   +  A KLF   PQ+D+V +  M+ G+ +  G G  EEA  +F  M E   
Sbjct: 627 FIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGF-AMHGMG--EEALRIFSYMLELGV 683

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPARN-----VVSWNAMISGFLQNGDVANAI 111
             D V    V+   +  G ++E  ++FNS+   +     +  +  ++    + G + +A 
Sbjct: 684 KPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAY 743

Query: 112 EFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
            F  RMP   +A++   + G  +     E  RV+
Sbjct: 744 TFVTRMPIEANANIWGTLLGACRTHHEVELGRVV 777


>gi|302760467|ref|XP_002963656.1| hypothetical protein SELMODRAFT_80298 [Selaginella moellendorffii]
 gi|300168924|gb|EFJ35527.1| hypothetical protein SELMODRAFT_80298 [Selaginella moellendorffii]
          Length = 597

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 173/548 (31%), Positives = 293/548 (53%), Gaps = 40/548 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDI-MPERD 59
           MISGYV+  E+  A  LF ++P+RD+VSWN M++G   +   G +   + LF   MPER+
Sbjct: 74  MISGYVESGELQPAVDLFQQIPERDLVSWNAMLAGLAQA---GDVSHCQALFFTEMPERN 130

Query: 60  ---CVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
               V+WN++I  +A  G  E+A  + + MP +N++SWN+ I+ F  +G V  A   FDR
Sbjct: 131 IVNLVSWNSMIQAFASGGHAEKATAILDEMPEQNLISWNSAIAAFKDSGLVTEARALFDR 190

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           +P ++  + SA++S    NG L+EA+ +      +         +   LI GY    R++
Sbjct: 191 LPRKNEVTWSAMISAYAMNGFLEEASGLCSLVPMK------EASSLTALIQGYALHNRLK 244

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           EA ++F + P+           + ++++  SMI  Y  AG    ++ +F+++ +RD   W
Sbjct: 245 EATEVFQRFPL----------LQDDLIAVTSMIRAYGAAGFPDESKALFDRLRQRDLLCW 294

Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
            TM+        M+ A  LF KMP  D  TW AM++ Y Q GN + A  FF    + ++V
Sbjct: 295 ITMLGALAQGECMDRAEALFHKMPGHDAATWTAMITAYTQAGNFKQAKLFFDTTKEVSVV 354

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQ 354
           S N+M+A      + + A  LF +M      P ++  S  ++++  S +  L    ++  
Sbjct: 355 SLNAMLAAYCQQGNLKYATALFEKM------PSQNEASRAIAIAAYSRLGQLGDAKRVFD 408

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414
            +     P +   N++I  YA  G + EARI+F+     ++   W+ MI      G   +
Sbjct: 409 SIESLSAPGL---NSMIGGYAHGGYLNEARIVFQS-SAARDSSPWSTMIAALGKKGLFDD 464

Query: 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474
           A++LF+ M+   V    ITF +++++ +H G +EEG +HF+SM  +YGI+P  +H+  +V
Sbjct: 465 AVDLFREMQQQGVKAGEITFGALIASSSHGGRLEEGCEHFQSMAADYGIDPGRDHYECIV 524

Query: 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534
           D++ R GRLE+A +L + +   PD + W  +LGAC + N+   +  AAE    ++   S 
Sbjct: 525 DLLARSGRLEEAEELARSI---PDSSAWMKILGACWLQNDRARSARAAE--FALDARKSG 579

Query: 535 PYVLLYNM 542
           PY+LL N+
Sbjct: 580 PYILLANI 587



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 14/221 (6%)

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
           ++ V+WN+M+   A  G++  A +IF++M  R+  +W TMIS      D   A  +F +M
Sbjct: 4   KDPVAWNAMLQANAVNGEIQEAWKIFDEMAARNVITWTTMISAIAADGDSLRARAVFDRM 63

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
              +T +WNAM+SGY + G L+ A+D F+++P+++LVSWN+M+AG     D      LF 
Sbjct: 64  AQHNTTSWNAMISGYVESGELQPAVDLFQQIPERDLVSWNAMLAGLAQAGDVSHCQALFF 123

Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNAL-----ITMY 374
                 E P+R+   +++S +S I     G   H      ++ ++P  N +     I  +
Sbjct: 124 T-----EMPERNIV-NLVSWNSMIQAFASGG--HAEKATAILDEMPEQNLISWNSAIAAF 175

Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
              G + EAR +F+ +   KN V+W+AMI   A +GF  EA
Sbjct: 176 KDSGLVTEARALFDRLP-RKNEVTWSAMISAYAMNGFLEEA 215



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 131/280 (46%), Gaps = 25/280 (8%)

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFF 287
           M  +D  +WN M+       +++EA  +F +M   + +TW  M+S  A  G+   A   F
Sbjct: 1   MPSKDPVAWNAMLQANAVNGEIQEAWKIFDEMAARNVITWTTMISAIAADGDSLRARAVF 60

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH--TFSSILS--MSSGI 343
            RM Q N  SWN+MI+G   + + + A+ LF Q+      P+R   +++++L+    +G 
Sbjct: 61  DRMAQHNTTSWNAMISGYVESGELQPAVDLFQQI------PERDLVSWNAMLAGLAQAGD 114

Query: 344 VDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           V     +   +M  + ++  V  N+ +I  +A  G   +A  I +EM   +N++SWN+ I
Sbjct: 115 VSHCQALFFTEMPERNIVNLVSWNS-MIQAFASGGHAEKATAILDEMP-EQNLISWNSAI 172

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE--GRQHFKSMVNEY 461
                 G  TEA  LF  +         +T+ +++SA A  G +EE  G      M    
Sbjct: 173 AAFKDSGLVTEARALFDRLPR----KNEVTWSAMISAYAMNGFLEEASGLCSLVPMKEAS 228

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
            +   I+ +A        H RL++A ++ +  P   D  +
Sbjct: 229 SLTALIQGYA-------LHNRLKEATEVFQRFPLLQDDLI 261


>gi|224063136|ref|XP_002301008.1| predicted protein [Populus trichocarpa]
 gi|222842734|gb|EEE80281.1| predicted protein [Populus trichocarpa]
          Length = 691

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 179/567 (31%), Positives = 300/567 (52%), Gaps = 28/567 (4%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFD-IMPERDCVTWNTVISGYAKTGEMEEALRLF 83
           D+V  N ++  Y+     G L +AR +FD I    +  +WNT+ISGY K G +EEA+ LF
Sbjct: 139 DIVLLNALLDMYVKC---GCLSDARKVFDRIFLRANSTSWNTMISGYFKEGLVEEAVNLF 195

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELD 139
           N MP RNVVSWN +I+G  +NG  + A++F  +M       D  +    +      G L 
Sbjct: 196 NQMPDRNVVSWNTIIAGLAENGS-SRALQFVCKMHREGIKLDKFTFPCALKTCSYAGFLV 254

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
              ++   C     G E    A + L+  Y     +++A +LFD+       G G++   
Sbjct: 255 AGKQI--HCYVLKSGLESSCFAVSALVDMYSNCNGLDDAIRLFDQYS----GGTGSI--C 306

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME---EA 252
            ++V WNSM+  Y       +A  +  Q+       D+++ ++ +   I++L++    + 
Sbjct: 307 DSLVLWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVCINLLNVRLGIQV 366

Query: 253 SNLFVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
             L V   H  D +  + +V  YA++GN++ A   F R+P+K++V+W+ ++ GC   +  
Sbjct: 367 HALIVTSGHELDYVVGSILVDLYAKLGNMKDAFKLFHRLPKKDIVAWSGLLMGCAKMELN 426

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPIN-NAL 370
             A+ LF  M   G + D++  S++L + S +  +  G Q+H    K       +   AL
Sbjct: 427 SLALSLFRDMVTFGVEVDQYIVSNVLKVCSSLASIGTGKQVHAFCIKRGYETEQVTITAL 486

Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
           I MY++CG + +  ++F  +   ++VV W  +I GCA +G A EALE+F+ M    + P 
Sbjct: 487 IDMYSKCGEVEDGLVLFGCVAD-RDVVCWTGIIVGCAQNGRANEALEIFRQMVQSGLKPN 545

Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
            +T++ VL+AC HAGLV E +  F +M  ++ +EP++EH+  +VD++ + G  ++   LI
Sbjct: 546 EVTYLGVLTACRHAGLVVEAQTIFGTMKCDHRLEPQLEHYYCMVDLLCQAGYFKEVEKLI 605

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
             MPF+PDK +W ++LGAC  H N  L    AE L+   P + + YV+L N Y  +G WD
Sbjct: 606 AEMPFKPDKTIWSSMLGACGTHRNTGLVSTIAENLLANCPNDPSIYVMLSNAYGTLGMWD 665

Query: 551 DANEVRLLMKSNNIKKPTGYSWVDFSP 577
             ++VR   K   + K  G SW++ S 
Sbjct: 666 SLSQVREAAKKLGV-KAAGTSWIEISS 691



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 136/530 (25%), Positives = 244/530 (46%), Gaps = 45/530 (8%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS--GFLEEARYLFDIMPERDCVT 62
           +  R +  K  K F     +   S NV I+  + S  +   FL +A  LFD MP ++ VT
Sbjct: 12  HCGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKLFDEMPVKNIVT 71

Query: 63  WNTVISGYAKTGEMEEALRLFNSM-PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR- 120
           W T++S Y   G+  EA++L+  M  +++ V    M S  L+   +   IE    +  R 
Sbjct: 72  WTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEIELGRLIHKRF 131

Query: 121 -------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
                  D   L+AL+   ++ G L +A +V  +   R +       ++NT+I GY + G
Sbjct: 132 SRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANS-----TSWNTMISGYFKEG 186

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----- 228
            VEEA  LF+++P             RN+VSWN++I   A+ G   + + + +       
Sbjct: 187 LVEEAVNLFNQMP------------DRNVVSWNTIIAGLAENGSSRALQFVCKMHREGIK 234

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW--NAMVSGYAQIGNLELALDF 286
           L++ TF        Y   L   +  + +V     ++  +  +A+V  Y+    L+ A+  
Sbjct: 235 LDKFTFPCALKTCSYAGFLVAGKQIHCYVLKSGLESSCFAVSALVDMYSNCNGLDDAIRL 294

Query: 287 FKRMPQ------KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           F +          +LV WNSM++G   ++    A+ +  Q+   G   D +T SS L + 
Sbjct: 295 FDQYSGGTGSICDSLVLWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVC 354

Query: 341 SGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
             ++++ LG+Q+H + VT     D  + + L+ +YA+ G + +A  +F  +   K++V+W
Sbjct: 355 INLLNVRLGIQVHALIVTSGHELDYVVGSILVDLYAKLGNMKDAFKLFHRLP-KKDIVAW 413

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
           + ++ GCA     + AL LF+ M +F V        +VL  C+    +  G+Q   +   
Sbjct: 414 SGLLMGCAKMELNSLALSLFRDMVTFGVEVDQYIVSNVLKVCSSLASIGTGKQ-VHAFCI 472

Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           + G E       +L+D+  + G +ED + L  G   + D   W  ++  C
Sbjct: 473 KRGYETEQVTITALIDMYSKCGEVEDGLVLF-GCVADRDVVCWTGIIVGC 521



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 113/477 (23%), Positives = 201/477 (42%), Gaps = 95/477 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI---SSRG---------------- 41
           MISGY K   + +A  LF++MP R+VVSWN +I+G     SSR                 
Sbjct: 178 MISGYFKEGLVEEAVNLFNQMPDRNVVSWNTIIAGLAENGSSRALQFVCKMHREGIKLDK 237

Query: 42  ------------SGFLEEAR----YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNS 85
                       +GFL   +    Y+     E  C   + ++  Y+    +++A+RLF+ 
Sbjct: 238 FTFPCALKTCSYAGFLVAGKQIHCYVLKSGLESSCFAVSALVDMYSNCNGLDDAIRLFDQ 297

Query: 86  MP------ARNVVSWNAMISGFL---QNGDVANAI-EFFDRMPGRDSASLSALVSGLIQ- 134
                     ++V WN+M+SG++   +N    N I +        DS +LS+ +   I  
Sbjct: 298 YSGGTGSICDSLVLWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVCINL 357

Query: 135 -NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG-YGQRGRVEEARKLFDKIPVNCDRG 192
            N  L      L+        G +L     +++V  Y + G +++A KLF ++P      
Sbjct: 358 LNVRLGIQVHALI-----VTSGHELDYVVGSILVDLYAKLGNMKDAFKLFHRLP------ 406

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
                 K++IV+W+ ++M  AK      A  +F     RD  ++   +  YI    ++  
Sbjct: 407 ------KKDIVAWSGLLMGCAKMELNSLALSLF-----RDMVTFGVEVDQYIVSNVLKVC 455

Query: 253 SNLFV----KMPHP---------DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           S+L      K  H          + +T  A++  Y++ G +E  L  F  +  +++V W 
Sbjct: 456 SSLASIGTGKQVHAFCIKRGYETEQVTITALIDMYSKCGEVEDGLVLFGCVADRDVVCWT 515

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTK 358
            +I GC  N     A+++F QM   G KP+  T+  +L+        H G+ +  Q +  
Sbjct: 516 GIIVGCAQNGRANEALEIFRQMVQSGLKPNEVTYLGVLTACR-----HAGLVVEAQTIFG 570

Query: 359 TVI------PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           T+       P +     ++ +  + G   E   +  EM    +   W++M+G C +H
Sbjct: 571 TMKCDHRLEPQLEHYYCMVDLLCQAGYFKEVEKLIAEMPFKPDKTIWSSMLGACGTH 627


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 175/537 (32%), Positives = 287/537 (53%), Gaps = 37/537 (6%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D  T N++++ YAK G +E+A R+F+ MP R++V+WN M+ G++ NG  + A+  F  
Sbjct: 139 EHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQE 198

Query: 117 MPG-----RDSASLSALVSGL---IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           M        DS  + A ++     + + +  E    +++ G   D     ++   +L+  
Sbjct: 199 MHDALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQD-----IKVGTSLLDM 253

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y + G V  AR +F  +P+            R +V+WN MI  YA       A + F QM
Sbjct: 254 YCKCGEVAYARSVFATMPL------------RTVVTWNCMIGGYALNERPDEAFDCFMQM 301

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH---------PDTLTWNAMVSGYAQIGN 279
              +      + +  +     +  S+L+ +  H         P  +   A++  Y ++G 
Sbjct: 302 -RAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGK 360

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           +E +   F ++  K LVSWN+MIA     + Y  AI LF+++  +   PD  T S+++  
Sbjct: 361 VESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPA 420

Query: 340 SSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
              +  L    QIH  +       +  I NA++ MYAR G +V +R IF++M + K+V+S
Sbjct: 421 FVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKM-VSKDVIS 479

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN MI G A HG    ALE+F  M+   + P   TF+SVL+AC+ +GLV+EG  HF  M+
Sbjct: 480 WNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLML 539

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            EYG+ P+IEH+  + D++GR G L + +  I+ MP +P   VWG+LL A R  N++++A
Sbjct: 540 QEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIA 599

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           + AAE + ++E +N+  Y++L +MYAD GRW+D   VRLLMK   +++    S V+ 
Sbjct: 600 EYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVRLLMKEKGLRRTEPISLVEL 656



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 113/468 (24%), Positives = 204/468 (43%), Gaps = 93/468 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARY--LFDIMP-- 56
           +++ Y K   +  A ++FD MP RD+V+WN M+ GY+S+ G G L  A +  + D +   
Sbjct: 148 LVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSN-GLGSLALACFQEMHDALEVQ 206

Query: 57  ----------------------------------ERDCVTWNTVISGYAKTGEMEEALRL 82
                                             E+D     +++  Y K GE+  A  +
Sbjct: 207 HDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSV 266

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAA 142
           F +MP R VV+WN MI G+  N     A + F +M             GL    E+  A 
Sbjct: 267 FATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAE----------GL--QVEVVTAI 314

Query: 143 RVLVKCGS-------RCDGGEDLVRAY-------NTLIVGYGQRGRVEEARKLFDKIPVN 188
            +L  C         R   G  + R +         L+  YG+ G+VE + K+F KI   
Sbjct: 315 NLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIA-- 372

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYI 244
                      + +VSWN+MI  Y        A  +F ++L +    D F+ +T++  ++
Sbjct: 373 ----------NKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFV 422

Query: 245 HVLDMEEASNL---FVKMPHPD-TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
            +  +     +    + + + + TL  NA++  YA+ G++  + + F +M  K+++SWN+
Sbjct: 423 LLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNT 482

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVD---LHLGMQIHQM 355
           MI G   +   + A+++F +M+  G +P+  TF S+L+    SG+VD   +H  + + + 
Sbjct: 483 MIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEY 542

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
               +IP +     +  +  R G + E     E M +      W +++
Sbjct: 543 ---GMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSLL 587



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 136/562 (24%), Positives = 232/562 (41%), Gaps = 76/562 (13%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PG 119
            +++   A  G M+EA+    ++   +    N MI GF   G  A A+  +  M      
Sbjct: 45  KSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGAR 104

Query: 120 RDSASLSALVSGLIQNGELDE---AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            D  +   +V    + G LDE   A  +++K G   D     V   N+L+  Y + G VE
Sbjct: 105 PDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHD-----VYTCNSLVAFYAKLGLVE 159

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           +A ++FD +PV            R+IV+WN+M+  Y   G    A   F++M   D    
Sbjct: 160 DAERVFDGMPV------------RDIVTWNTMVDGYVSNGLGSLALACFQEM--HDALEV 205

Query: 237 NTMISGYIHVLD--MEEASNLFVKMPH---------PDTLTWNAMVSGYAQIGNLELALD 285
                G I  L     E S++  K  H          D     +++  Y + G +  A  
Sbjct: 206 QHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARS 265

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F  MP + +V+WN MI G   N+  + A   F+QM+ EG + +  T  ++L+  +    
Sbjct: 266 VFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTES 325

Query: 346 LHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
              G  +H  +V +  +P V +  AL+ MY + G +  +  IF ++   K +VSWN MI 
Sbjct: 326 SLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIA-NKTLVSWNNMIA 384

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV------ 458
                   TEA+ LF  + +  + P Y T  +V+ A    G +   RQ    ++      
Sbjct: 385 AYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAE 444

Query: 459 NEYGIEPRIEHFASLVDIVGR------------------------HGRLEDAMDLIKGMP 494
           N   +   +  +A   D+V                          HG+ + A+++   M 
Sbjct: 445 NTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMK 504

Query: 495 F---EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD-VGRWD 550
           +   +P+++ + ++L AC V   V+   +    ++  +     P +  Y    D +GR  
Sbjct: 505 YNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLML--QEYGMIPQIEHYGCMTDLLGREG 562

Query: 551 DANEVRLLMKSNNIKKPTGYSW 572
           D  EV   ++S  I  PT   W
Sbjct: 563 DLREVLQFIESMPI-DPTSRVW 583



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 169/389 (43%), Gaps = 52/389 (13%)

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
           QN   A + E   R+P +  +S S +VS L   G +DEA   L         G D    +
Sbjct: 23  QNLIPATSKEPPPRLPPKRGSSKSLVVS-LAAEGRMDEAVEALAAVR-----GPDAF-LH 75

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N +I G+   G    A   +  +  +  R +   RF   +V     + C A+ G +   R
Sbjct: 76  NVMIRGFADAGLPAGALAAYRGMLEDGARPD---RFTFPVV-----VKCCARLGGLDEGR 127

Query: 223 E----IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
                + +  LE D ++ N++++ Y  +  +E+A  +F  MP  D +TWN MV GY   G
Sbjct: 128 AAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNG 187

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
              LAL  F+ M               E   D  G I       +E           + S
Sbjct: 188 LGSLALACFQEMHD-----------ALEVQHDSVGIIAALAACCLE-----------VSS 225

Query: 339 MSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
           M         G +IH  V +  +  D+ +  +L+ MY +CG +  AR +F  M  L+ VV
Sbjct: 226 MQ--------GKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMP-LRTVV 276

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           +WN MIGG A +    EA + F  MR+  +    +T I++L+ACA       GR     +
Sbjct: 277 TWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYV 336

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           V    + P +    +L+++ G+ G++E +
Sbjct: 337 VRRQFL-PHVVLETALLEMYGKVGKVESS 364


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 178/491 (36%), Positives = 268/491 (54%), Gaps = 22/491 (4%)

Query: 95  NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
           ++++  +++ G    A   FDRMP ++    SAL++G    G+ + A  +L +   R  G
Sbjct: 56  SSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQ--MRSAG 113

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
            E  V  +N L+ G  + GR  +A     ++       EG   F  +    +  +     
Sbjct: 114 VEPNVITWNGLVSGLNRSGRALDAVTALVRM-----HSEG---FFPDATGVSCALSAVGD 165

Query: 215 AGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAM 270
             +V   +++   +++     D      +I  Y      +E   +F +  H D  + NA+
Sbjct: 166 VKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNAL 225

Query: 271 VSGYAQIGNLELALDFFK----RMPQKNLVSWNSMIAGCETN-KDYEGAIKLFIQMQVEG 325
           V+G ++   +  AL  F+    R  + N+VSW S++A C  N +D E A+ LF  MQ  G
Sbjct: 226 VAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLE-AVDLFRTMQSIG 284

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEAR 384
            +P+  T   +L   + +  L  G   H   + K  + DV + +AL+ MYA+CG    AR
Sbjct: 285 VEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHAR 344

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            IF+ M   +NVVSWNAMIGG A HG A  A++LF SM+  K  P  +TF  VL AC+ A
Sbjct: 345 TIFDAMPS-RNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQA 403

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           GL EEGR++F  M   +GI PR+EH+A +V ++GR G+L++A DLI  MPFEPD  +WG+
Sbjct: 404 GLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGS 463

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
           LLG+CRV+ NV LA+VAAE L ++EP N+  YVLL N+YA    WD  N VR  MK+  +
Sbjct: 464 LLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGL 523

Query: 565 KKPTGYSWVDF 575
           KK  G SW++ 
Sbjct: 524 KKEKGCSWIEI 534



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 189/426 (44%), Gaps = 58/426 (13%)

Query: 32  MISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-- 89
           ++  YI    +G    AR +FD MPE++ V W+ +I+GY+  G+ E A  L   M +   
Sbjct: 58  LLHSYIRLGATG---AARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGV 114

Query: 90  --NVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAAR 143
             NV++WN ++SG  ++G   +A+    RM       D+  +S  +S +    E+    +
Sbjct: 115 EPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQ 174

Query: 144 V---LVKCGSR---------------CDGGEDLVRAY-----------NTLIVGYGQRGR 174
           V   +VK G R               C   +++VR +           N L+ G  +  +
Sbjct: 175 VHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQ 234

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LE 230
           V EA  LF +      RG      + N+VSW S++ C  + G  + A ++F  M    +E
Sbjct: 235 VSEALLLFREFIC---RG-----VELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVE 286

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFV----KMPHPDTLTWNAMVSGYAQIGNLELALDF 286
            ++ +   ++  + +V  +    +       K    D    +A+V  YA+ G    A   
Sbjct: 287 PNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTI 346

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F  MP +N+VSWN+MI G   + D   A++LF  MQ   +KPD  TF+ +L   S     
Sbjct: 347 FDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLT 406

Query: 347 HLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
             G +    + +   + P +     ++T+  R G + EA  +  EM    +   W +++G
Sbjct: 407 EEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLG 466

Query: 405 GCASHG 410
            C  +G
Sbjct: 467 SCRVYG 472



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 148/326 (45%), Gaps = 43/326 (13%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
           L  D F  ++++  YI +     A ++F +MP  + + W+A+++GY+  G+ E A    +
Sbjct: 48  LAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLE 107

Query: 289 RMP----QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
           +M     + N+++WN +++G   +     A+   ++M  EG  PD    S  LS    + 
Sbjct: 108 QMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVK 167

Query: 345 DLHLGMQIHQMVTKTVIP-DVPINNALITMYARCG------------------------- 378
           ++ +G Q+H  V K     D  +  ALI MY +CG                         
Sbjct: 168 EVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVA 227

Query: 379 ------AIVEARIIFEEM---KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
                  + EA ++F E     +  NVVSW +++  C  +G   EA++LF++M+S  V P
Sbjct: 228 GLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEP 287

Query: 430 TYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
             +T   VL A A+   +  GR  H  S+    G    +   ++LVD+  + G+   A  
Sbjct: 288 NSVTIPCVLPAFANVAALMHGRSAHCFSL--RKGFLHDVYVGSALVDMYAKCGKARHART 345

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNN 514
           +   MP   +   W A++G   +H +
Sbjct: 346 IFDAMPSR-NVVSWNAMIGGYAMHGD 370



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 16/177 (9%)

Query: 58  RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
            D    + ++  YAK G+   A  +F++MP+RNVVSWNAMI G+  +GD ANA++ F  M
Sbjct: 322 HDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSM 381

Query: 118 ----PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
                  D  + + ++    Q G  +E  R   +   +  G    +  Y  ++   G+ G
Sbjct: 382 QKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEM-QQGHGISPRMEHYACMVTLLGRSG 440

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
           +++EA  L +++P           F+ +   W S++      G+V+ A    E++ +
Sbjct: 441 KLDEAYDLINEMP-----------FEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQ 486



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 12/127 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           ++  Y K  +   AR +FD MP R+VVSWN MI GY      G    A  LF  M     
Sbjct: 330 LVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAM---HGDAANAVQLFCSMQKCKQ 386

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
           + D VT+  V+   ++ G  EE  R FN M   + +S     +  M++   ++G +  A 
Sbjct: 387 KPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAY 446

Query: 112 EFFDRMP 118
           +  + MP
Sbjct: 447 DLINEMP 453



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 10/125 (8%)

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARII 386
           PD H   S L          L   +H     + + + P + ++L+  Y R GA   AR +
Sbjct: 18  PDPHLLPSALKSCPA---QPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSV 74

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+ M   KNVV W+A+I G ++ G A  A  L + MRS  V P  IT+  ++S     GL
Sbjct: 75  FDRMP-EKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVS-----GL 128

Query: 447 VEEGR 451
              GR
Sbjct: 129 NRSGR 133


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 171/517 (33%), Positives = 270/517 (52%), Gaps = 51/517 (9%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
           ++  YA   ++  A ++F+ +P RNV+  N MI  ++ NG     ++ F  M G      
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCG------ 133

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
                    N   D      V     C G         T+++G    G   +        
Sbjct: 134 --------CNVRPDHYTFPCVLKACSCSG---------TIVIGRKIHGSATK-------- 168

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
                     V     +   N ++  Y K G +  AR + ++M  RD  SWN+++ GY  
Sbjct: 169 ----------VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQ 218

Query: 246 VLDMEEASNLF-----VKMPHPDTLTWNAMVSGYAQIG--NLELALDFFKRMPQKNLVSW 298
               ++A  +      VK+ H D  T  +++   +     N+    D F +M +K+LVSW
Sbjct: 219 NQRFDDALEVCREMESVKISH-DAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSW 277

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT- 357
           N MI     N     A++L+ +M+ +G +PD  + +S+L        L LG +IH  +  
Sbjct: 278 NVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIER 337

Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
           K +IP++ + NALI MYA+CG + +AR +FE MK  ++VVSW AMI      G   +A+ 
Sbjct: 338 KKLIPNLLLENALIDMYAKCGCLEKARDVFENMKS-RDVVSWTAMISAYGFSGRGCDAVA 396

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           LF  ++   ++P  I F++ L+AC+HAGL+EEGR  FK M + Y I PR+EH A +VD++
Sbjct: 397 LFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLL 456

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
           GR G++++A   I+ M  EP++ VWGALLGACRVH++ ++  +AA+ L ++ PE S  YV
Sbjct: 457 GRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYV 516

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           LL N+YA  GRW++   +R +MKS  +KK  G S V+
Sbjct: 517 LLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVE 553



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 155/367 (42%), Gaps = 87/367 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           ++  Y   +++A ARK+FDE+P+R+V+  NVMI  Y++   +GF  E   +F  M     
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVN---NGFYGEGVKVFGTMCGCNV 136

Query: 56  -PE--------RDCVTWNTVISG-------------------------YAKTGEMEEALR 81
            P+        + C    T++ G                         Y K G + EA  
Sbjct: 137 RPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 196

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGE 137
           + + M  R+VVSWN+++ G+ QN    +A+E    M       D+ ++++L+   + N  
Sbjct: 197 VLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPA-VSNTT 255

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK---------- 184
            +    V     K G +      LV ++N +I  Y +     EA +L+ +          
Sbjct: 256 TENVMYVKDMFFKMGKK-----SLV-SWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDA 309

Query: 185 ------IPVNCDRG--------EGNVRFKR---NIVSWNSMIMCYAKAGDVVSAREIFEQ 227
                 +P   D           G +  K+   N++  N++I  YAK G +  AR++FE 
Sbjct: 310 VSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFEN 369

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELA 283
           M  RD  SW  MIS Y       +A  LF K+      PD++ +   ++  +  G LE  
Sbjct: 370 MKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEG 429

Query: 284 LDFFKRM 290
              FK M
Sbjct: 430 RSCFKLM 436


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 168/523 (32%), Positives = 272/523 (52%), Gaps = 32/523 (6%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA-----S 124
           Y K GE++ A  +F  M  RNVVSW A++ GFL++GD    +     M     A     +
Sbjct: 2   YVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYT 61

Query: 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK 184
           LSA +      G  D AA V +       G ++     ++L++ Y + GR+ +AR++FD 
Sbjct: 62  LSASLKACCVVG--DTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFD- 118

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER------DTFSWNT 238
                  G G       I +WN+M+  YA AG    A  +F +M         D F++ +
Sbjct: 119 -------GAG---LGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFAS 168

Query: 239 MISGYIHVLDMEEASNLFVKMPHP------DTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
           ++     +    E + +   M         + +   A+V  Y +   L +A+  F+R+ +
Sbjct: 169 LLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLER 228

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           KN++ W +++ G         A++LF +    G +PD H  SS++ + +    +  G Q+
Sbjct: 229 KNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQV 288

Query: 353 HQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           H    K     DV   N+++ MY +CG   EA  +F EM+   NVVSW  M+ G   HG 
Sbjct: 289 HCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRA-PNVVSWTTMVNGLGKHGL 347

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             EA+ LF+ MR+  V P  +T++++LSAC+HAGLV+E R++F  +  +  + P+ EH+A
Sbjct: 348 GREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYA 407

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            +VD++GR G L +A DLI+ MP EP   VW  LL ACRVH +V + + A + L+ ++ +
Sbjct: 408 CMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGD 467

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N   YV L N+ A+ G W + ++VR  M+   +KK  G SWV+
Sbjct: 468 NPVNYVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVE 510



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 116/501 (23%), Positives = 204/501 (40%), Gaps = 88/501 (17%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG----FLEEARYLFDIMP---- 56
           YVK  E+  A ++F  M  R+VVSW  ++ G++    +      L E R   +  P    
Sbjct: 2   YVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYT 61

Query: 57  ------------------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSM 86
                                         E D V  + V+  Y+K G + +A R+F+  
Sbjct: 62  LSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLV-YSKGGRIGDARRVFDGA 120

Query: 87  P-ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS---------ASLSALVSGLIQNG 136
                + +WNAM+SG+   G   +A+  F  M   +          ASL    SGL   G
Sbjct: 121 GLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGL---G 177

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG-----YGQRGRVEEARKLFDKIPVNCDR 191
              E A+V     +          A N ++ G     Y +  R+  A ++F+++      
Sbjct: 178 ATREGAQVHAAMTA-----SGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLE----- 227

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD--- 248
                  ++N++ W ++++ +A+ G V  A E+F +         + ++S  + VL    
Sbjct: 228 -------RKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFA 280

Query: 249 -MEEASNLF---VKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
            +E+   +    +K P   D    N++V  Y + G  + A   F+ M   N+VSW +M+ 
Sbjct: 281 LVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVN 340

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKTVI 361
           G   +     A+ LF +M+  G +PD  T+ ++LS  S  G+VD            +TV 
Sbjct: 341 GLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVR 400

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH---GFATEALEL 418
           P       ++ +  R G + EAR +   M +   V  W  ++  C  H       EA ++
Sbjct: 401 PKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDV 460

Query: 419 FKSMRSFKVLPTYITFISVLS 439
             +M     +  Y+T  +VL+
Sbjct: 461 LLAMDGDNPV-NYVTLSNVLA 480


>gi|356564579|ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Glycine max]
          Length = 576

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 180/530 (33%), Positives = 298/530 (56%), Gaps = 42/530 (7%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSM------PARNVVSWN----AMISGFLQNGDVA 108
           D  +W  VI  +++     EA+ L+  M      P  + VS      A I   L    + 
Sbjct: 68  DSFSWGCVIRFFSQKCLFTEAVSLYVQMHRTSLCPTSHAVSSALKSCARIHDMLCGMSIH 127

Query: 109 NAIEFFDRMPGRDSASL--SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166
             +  F    G ++     +AL+    + G++  A +V  +  ++       V ++N+L+
Sbjct: 128 GQVHVF----GFNTCVYVQTALLDLYSKIGDMGTARKVFDEMANKS------VVSWNSLL 177

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
            GY + G ++EA+ LF +IP             ++++SWNSMI  YAKAG+V  A  +F+
Sbjct: 178 SGYVKAGNLDEAQYLFSEIP------------GKDVISWNSMISGYAKAGNVGQACTLFQ 225

Query: 227 QMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
           +M ER+  SWN MI+G+I    +  A   F  MP  + ++W  M++GY++ G+++ A   
Sbjct: 226 RMPERNLSSWNAMIAGFIDCGSLVSAREFFDTMPRRNCVSWITMIAGYSKGGDVDSARKL 285

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG--EKPDRHTFSSILSMSSGIV 344
           F +M  K+L+S+N+MIA    N   + A++LF  M  +     PD+ T +S++S  S + 
Sbjct: 286 FDQMDHKDLLSYNAMIACYAQNSKPKEALELFNDMLKQDIYVHPDKMTLASVISACSQLG 345

Query: 345 DL-HLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           DL H       M    ++ D  +  ALI +YA+CG+I +A  +F  ++  +++V+++AMI
Sbjct: 346 DLEHWWWIESHMNDFGIVLDDHLATALIDLYAKCGSIDKAYELFHNLRK-RDLVAYSAMI 404

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
            GC  +G A++A++LF+ M +  + P  +T+  +L+A  HAGLVE+G Q F SM  +YG+
Sbjct: 405 YGCGINGKASDAIKLFEQMLAECIGPNLVTYTGLLTAYNHAGLVEKGYQCFNSM-KDYGL 463

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE 523
            P I+H+  +VD+ GR G L++A  LI  MP +P+  VWGALL ACR+HNNVEL ++A +
Sbjct: 464 VPSIDHYGIMVDLFGRAGYLDEAYKLILNMPMQPNAGVWGALLLACRLHNNVELGEIAVQ 523

Query: 524 ALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
             +K+E + +    LL ++YA V +WDDA ++R  M+    K  TG SW 
Sbjct: 524 HCIKLETDTTGYCSLLSSIYATVEKWDDAKKLRKGMEG---KDFTGCSWT 570



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/406 (30%), Positives = 213/406 (52%), Gaps = 43/406 (10%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
           Y K  +M  ARK+FDEM  + VVSWN ++SGY+ +   G L+EA+YLF  +P +D ++WN
Sbjct: 149 YSKIGDMGTARKVFDEMANKSVVSWNSLLSGYVKA---GNLDEAQYLFSEIPGKDVISWN 205

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
           ++ISGYAK G + +A  LF  MP RN+ SWNAMI+GF+  G + +A EFFD MP R+  S
Sbjct: 206 SMISGYAKAGNVGQACTLFQRMPERNLSSWNAMIAGFIDCGSLVSAREFFDTMPRRNCVS 265

Query: 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK 184
              +++G  + G++D A ++  +   +     DL+ +YN +I  Y Q  + +EA +LF+ 
Sbjct: 266 WITMIAGYSKGGDVDSARKLFDQMDHK-----DLL-SYNAMIACYAQNSKPKEALELFN- 318

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI 244
                D  + ++    + ++  S+I   ++ GD+     I   M            + + 
Sbjct: 319 -----DMLKQDIYVHPDKMTLASVISACSQLGDLEHWWWIESHM------------NDFG 361

Query: 245 HVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
            VLD   A+               A++  YA+ G+++ A + F  + +++LV++++MI G
Sbjct: 362 IVLDDHLAT---------------ALIDLYAKCGSIDKAYELFHNLRKRDLVAYSAMIYG 406

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ-IHQMVTKTVIPD 363
           C  N     AIKLF QM  E   P+  T++ +L+  +    +  G Q  + M    ++P 
Sbjct: 407 CGINGKASDAIKLFEQMLAECIGPNLVTYTGLLTAYNHAGLVEKGYQCFNSMKDYGLVPS 466

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           +     ++ ++ R G + EA  +   M +  N   W A++  C  H
Sbjct: 467 IDHYGIMVDLFGRAGYLDEAYKLILNMPMQPNAGVWGALLLACRLH 512



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 179/383 (46%), Gaps = 63/383 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++SGYVK   + +A+ LF E+P +DV+SWN MISGY  +   G   +A  LF  MPER+ 
Sbjct: 176 LLSGYVKAGNLDEAQYLFSEIPGKDVISWNSMISGYAKAGNVG---QACTLFQRMPERNL 232

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN +I+G+   G +  A   F++MP RN VSW  MI+G+ + GDV +A + FD+M  +
Sbjct: 233 SSWNAMIAGFIDCGSLVSAREFFDTMPRRNCVSWITMIAGYSKGGDVDSARKLFDQMDHK 292

Query: 121 DSASLSALVSGLIQNGELDEAARV-----------------LVKCGSRCDGGEDLVRAY- 162
           D  S +A+++   QN +  EA  +                 L    S C    DL   + 
Sbjct: 293 DLLSYNAMIACYAQNSKPKEALELFNDMLKQDIYVHPDKMTLASVISACSQLGDLEHWWW 352

Query: 163 -----------------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205
                              LI  Y + G +++A +LF            N+R KR++V++
Sbjct: 353 IESHMNDFGIVLDDHLATALIDLYAKCGSIDKAYELFH-----------NLR-KRDLVAY 400

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           ++MI      G    A ++FEQML      +  ++  +++ Y H   +E+    F  M  
Sbjct: 401 SAMIYGCGINGKASDAIKLFEQMLAECIGPNLVTYTGLLTAYNHAGLVEKGYQCFNSMKD 460

Query: 262 ----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE-GAI 315
               P    +  MV  + + G L+ A      MP Q N   W +++  C  + + E G I
Sbjct: 461 YGLVPSIDHYGIMVDLFGRAGYLDEAYKLILNMPMQPNAGVWGALLLACRLHNNVELGEI 520

Query: 316 KLFIQMQVEGEKPDRHTFSSILS 338
            +   +++E    D   + S+LS
Sbjct: 521 AVQHCIKLE---TDTTGYCSLLS 540


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 237/367 (64%), Gaps = 4/367 (1%)

Query: 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN 268
           +MCY     V     +F+   + +T   N+++  Y+    +++A  +F +M   D ++WN
Sbjct: 130 LMCYDLGKQVHG--HVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWN 187

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
            ++SG+ ++G +  A   F+ M  K + SW ++++G      Y  A++ F +MQ+ G +P
Sbjct: 188 TLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEP 247

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIF 387
           D  +  S+L   + +  L LG  IH    K   + ++ + NALI MYA+CG+I + R +F
Sbjct: 248 DEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLF 307

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447
           ++MK  ++V+SW+ MI G A+HG A EA+ELF+ M+  K+ P+ ITF+ +L+ACAHAGL+
Sbjct: 308 DQMKE-RDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLL 366

Query: 448 EEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
            EG ++F+SM  +Y IEP +EH+  LV+++G  GRL+ A++L+K MP +PD  +WG+LL 
Sbjct: 367 NEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLS 426

Query: 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567
           +CR H N+++A +A E L+++EP ++  YVLL N+YAD+G+WD  + +R LM+S ++KK 
Sbjct: 427 SCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKT 486

Query: 568 TGYSWVD 574
            G S ++
Sbjct: 487 PGCSSIE 493



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 151/307 (49%), Gaps = 31/307 (10%)

Query: 23  QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRL 82
           + + V  N ++  Y+       L++A  +F+ M ERD V+WNT+ISG+ + G+M  A  +
Sbjct: 149 KSNTVVENSLVEMYVKCDS---LDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAI 205

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGEL 138
           F  M  + + SW A++SG+ + G  A+A+EFF RM       D  SL +++    Q G L
Sbjct: 206 FEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGAL 265

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
           +    + +       G    +   N LI  Y + G +++ R+LFD++             
Sbjct: 266 ELGKWIHIYADKA--GFLRNICVCNALIEMYAKCGSIDQGRRLFDQMK------------ 311

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASN 254
           +R+++SW++MI+  A  G    A E+F++M    +E    ++  +++   H   + E   
Sbjct: 312 ERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLR 371

Query: 255 LFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETN 308
            F  M       P    +  +V+     G L+ AL+  K+MP+K +   W S+++ C ++
Sbjct: 372 YFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSH 431

Query: 309 KDYEGAI 315
            + + A+
Sbjct: 432 GNLKIAV 438



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 22/298 (7%)

Query: 50  YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVAN 109
           ++F    + + V  N+++  Y K   +++A R+F  M  R+ VSWN +ISG ++ G +  
Sbjct: 142 HVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRR 201

Query: 110 AIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
           A   F+ M  +   S +A+VSG  + G   +A     +   +  G E    +  +++   
Sbjct: 202 ARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRR--MQMVGIEPDEISLVSVLPDC 259

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
            Q G +E    L   I +  D+      F RNI   N++I  YAK G +   R +F+QM 
Sbjct: 260 AQLGALE----LGKWIHIYADKAG----FLRNICVCNALIEMYAKCGSIDQGRRLFDQMK 311

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALD 285
           ERD  SW+TMI G  +     EA  LF +M      P  +T+  +++  A  G L   L 
Sbjct: 312 ERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLR 371

Query: 286 FFKRMPQKNLVSWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
           +F+ M +   +       GC  N        + A++L  +M     KPD   + S+LS
Sbjct: 372 YFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMP---RKPDSPIWGSLLS 426



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 148/300 (49%), Gaps = 35/300 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  YVK   +  A ++F+EM +RD VSWN +ISG++     G +  AR +F+ M ++  
Sbjct: 158 LVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVR---LGQMRRARAIFEEMQDKTI 214

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNV----VSWNAMISGFLQNG--DVANAIEFF 114
            +W  ++SGYA+ G   +AL  F  M    +    +S  +++    Q G  ++   I  +
Sbjct: 215 FSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIY 274

Query: 115 DRMPG--RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
               G  R+    +AL+    + G +D+  R+  +   R     D++ +++T+IVG    
Sbjct: 275 ADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKER-----DVI-SWSTMIVGLANH 328

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           GR  EA +LF ++           + + +I+++  ++   A AG +      FE M +RD
Sbjct: 329 GRAREAIELFQEMQ--------KAKIEPSIITFVGLLTACAHAGLLNEGLRYFESM-KRD 379

Query: 233 TFSWNTMISGYIHVLD-------MEEASNLFVKMPH-PDTLTWNAMVSGYAQIGNLELAL 284
            ++    +  Y  +++       +++A  L  KMP  PD+  W +++S     GNL++A+
Sbjct: 380 -YNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAV 438



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 135/343 (39%), Gaps = 77/343 (22%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
           L + +F    M+    H  + E A+ LF  +  P+   +NAM+  Y              
Sbjct: 42  LSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKH------------ 89

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM--QVEGEK---PDRHTFSSILSMSSGI 343
                              NK Y  AI ++ QM     GE    PD+ TF  ++   +G+
Sbjct: 90  -------------------NKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGL 130

Query: 344 VDLHLGMQIHQMVTK-TVIPDVPINNALITMYARC------------------------- 377
           +   LG Q+H  V K     +  + N+L+ MY +C                         
Sbjct: 131 MCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLI 190

Query: 378 ------GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
                 G +  AR IFEEM+  K + SW A++ G A  G   +ALE F+ M+   + P  
Sbjct: 191 SGHVRLGQMRRARAIFEEMQ-DKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDE 249

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           I+ +SVL  CA  G +E G+       ++ G    I    +L+++  + G ++    L  
Sbjct: 250 ISLVSVLPDCAQLGALELGKW-IHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFD 308

Query: 492 GMPFEPDKAVWGALLGAC----RVHNNVELAQVAAEALMKVEP 530
            M  E D   W  ++       R    +EL Q   +A  K+EP
Sbjct: 309 QMK-ERDVISWSTMIVGLANHGRAREAIELFQEMQKA--KIEP 348


>gi|302776320|ref|XP_002971335.1| hypothetical protein SELMODRAFT_94945 [Selaginella moellendorffii]
 gi|300161317|gb|EFJ27933.1| hypothetical protein SELMODRAFT_94945 [Selaginella moellendorffii]
          Length = 614

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 180/595 (30%), Positives = 305/595 (51%), Gaps = 87/595 (14%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K   +  AR++FD + +R++ SW +M+  Y +  G G     R    +M     
Sbjct: 53  LVQAYGKCGSVRDAREVFDRIQRRNIFSWTIMLGAY-ADNGHG-----REALGLM----- 101

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
                    Y K G +EEA  +F ++  RN VSWNAM++ + QNG    A+  +  M   
Sbjct: 102 ---------YGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFE 152

Query: 121 ----DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
               D+ +  +++ G    GE +   R+   +V+ G     G +   A N L+  YG  G
Sbjct: 153 GIKPDATTFVSVLDGW--KGEGEHGRRIHDQVVESGF----GSNTTLA-NALVSMYGSGG 205

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LERD 232
           RV++AR +FD I             ++ +VSWN+M+  YA+ G    A ++F +M +  D
Sbjct: 206 RVDDARYVFDGIA------------EKTVVSWNAMLTAYAQNGRYGEAVDLFWKMDVAPD 253

Query: 233 TFSW--------------------------------NTMISGYIHVLDMEEASNLFVKMP 260
           T S+                                 ++++ Y   L +EEA   F +  
Sbjct: 254 TVSFVNVLGACMDIEEGRLVHEHIKASGFPVGVLVSTSLVNMYGRFLRLEEAKQCFEQAR 313

Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320
             D + WN+MV  YAQ G +E A   F R+  K++V W +++     N+D +GA+ ++  
Sbjct: 314 ERDRVCWNSMVGAYAQNGCMEEAKAVFDRVASKDIVLWTALLTAYSRNEDAKGALLVYRN 373

Query: 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGA 379
           M +EG + +R TFSSI+S+ +    L  G ++H   V+     DV +   L+  Y++C  
Sbjct: 374 MDLEGMEKNRFTFSSIVSVCADAEALAEGQKVHLHTVSVGYDKDVIVGTTLVDFYSKCHD 433

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR------SFKVLPTYIT 433
           +  AR +F+ ++  K++V+WN MI G   +G   EA+ L++ M       +  ++P  +T
Sbjct: 434 VDTARSVFDGIEG-KDIVTWNVMITGFVRNGHGREAVRLYQKMDLPPDSLTMGIMPDELT 492

Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
           F+SVL AC+H G +++G   F S   +YGI    +H+  +VDI+GR GRLE+A +++  M
Sbjct: 493 FLSVLFACSHGGSIQQGLDLFLSAGVDYGIATNTKHYVCVVDILGRVGRLEEAQEVLNRM 552

Query: 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           PF+ +   W  LLGACR+H + E  + AA+ +++++P+N+ PY LL  M++  GR
Sbjct: 553 PFQANDVAWMTLLGACRIHRDFEQGRRAADYVIELDPQNAAPYALLSTMFSAAGR 607



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 185/386 (47%), Gaps = 42/386 (10%)

Query: 202 IVSWNSMIMCYAKAGDVVSAR----EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           I S  S++   A   D+ +A+    EI       D +  N ++  Y     + +A  +F 
Sbjct: 12  ISSHASILRDCASTRDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFD 71

Query: 258 KMPHPDTLTWNAMVSGYA--------------QIGNLELALDFFKRMPQKNLVSWNSMIA 303
           ++   +  +W  M+  YA              + G+LE A   F  + ++N VSWN+M+A
Sbjct: 72  RIQRRNIFSWTIMLGAYADNGHGREALGLMYGKCGHLEEAKAVFATLVERNRVSWNAMLA 131

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIP 362
               N   E A++L+  M  EG KPD  TF S+L    G  +   G +IH Q+V      
Sbjct: 132 AYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKG--EGEHGRRIHDQVVESGFGS 189

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           +  + NAL++MY   G + +AR +F+ +   K VVSWNAM+   A +G   EA++LF  M
Sbjct: 190 NTTLANALVSMYGSGGRVDDARYVFDGIA-EKTVVSWNAMLTAYAQNGRYGEAVDLFWKM 248

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGR---QHFKSMVNEYGIEPRIEHFASLVDIVGR 479
               V P  ++F++VL AC     +EEGR   +H K+     G    +    SLV++ GR
Sbjct: 249 ---DVAPDTVSFVNVLGACMD---IEEGRLVHEHIKAS----GFPVGVLVSTSLVNMYGR 298

Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
             RLE+A    +    E D+  W +++GA   +  +E A+   +   +V  ++   +  L
Sbjct: 299 FLRLEEAKQCFE-QARERDRVCWNSMVGAYAQNGCMEEAKAVFD---RVASKDIVLWTAL 354

Query: 540 YNMYADVGRWDDANEVRLLMKSNNIK 565
              Y+   R +DA    L+ ++ +++
Sbjct: 355 LTAYS---RNEDAKGALLVYRNMDLE 377


>gi|296084817|emb|CBI27699.3| unnamed protein product [Vitis vinifera]
          Length = 807

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 189/654 (28%), Positives = 310/654 (47%), Gaps = 108/654 (16%)

Query: 12  AKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE-------------- 57
           + A   F+ +  +DVVSWN +I+G+  ++   F EEA  LF  M +              
Sbjct: 133 SDAYAAFNRIEFKDVVSWNAVIAGFSENK---FTEEAFKLFHAMLKGPIQPNYATIASIL 189

Query: 58  -----------------------------RDCVTWNTVISGYAKTGEMEEALRLFNSMPA 88
                                         D    N+++S Y + G+ME+A  LF +M +
Sbjct: 190 PVCASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKS 249

Query: 89  RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELDEAAR 143
           R++VSWNA+I+G+  NG+   A+E F           DS +L +++        L + A+
Sbjct: 250 RDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNL-QVAK 308

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
            +     R  G  +     N L+  Y +    + A + F  I             +++++
Sbjct: 309 GIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMIS------------RKDLI 356

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLE--------------------------RDTFSW- 236
           SWN+++  + ++G       +   ML                           ++T S+ 
Sbjct: 357 SWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYS 416

Query: 237 ---------------NTMISGYIHVLDMEEASNLFVKMPHP-DTLTWNAMVSGYAQIGNL 280
                          N M+  Y    +M+ A N+F  +    + +T N+M+SGY    + 
Sbjct: 417 IRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSH 476

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
           + A   F  M + +L +WN M+     N   + A+ LF ++Q +G KPD  T  SIL   
Sbjct: 477 DDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPAC 536

Query: 341 SGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
           + +  +H+  Q H  V +    DV +N A I MY++CG++  A  +F      K++V + 
Sbjct: 537 AHMASVHMLRQCHGYVIRACFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSP-QKDLVMFT 595

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
           AM+GG A HG   EAL +F  M    V P ++   +VL AC+HAGLV+EG + F S+   
Sbjct: 596 AMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKV 655

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           +G +P +E +A +VD++ R GR++DA   +  MP E +  +WG LLGACR H+ VEL +V
Sbjct: 656 HGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTHHEVELGRV 715

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            A+ L K+E +N   YV++ N+YA   RWD   E+R LM++  +KKP G SW++
Sbjct: 716 VADHLFKIESDNIGNYVVMSNLYAADARWDGVMEIRRLMRTRELKKPAGCSWIE 769



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 150/608 (24%), Positives = 260/608 (42%), Gaps = 118/608 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS-----------SRGSGFLEEAR 49
           +++ Y K   +    KLF EM QRD V WN+++SG               R    + EA+
Sbjct: 19  LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAK 78

Query: 50  --------------------------YLFDIMPERDCVTWNTVISGYAKTGEM-EEALRL 82
                                     Y+     E   +  N +IS YAK G +  +A   
Sbjct: 79  PNSVTIAIVLPVCARLREDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAA 138

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDS-ASLSALVSGLIQN 135
           FN +  ++VVSWNA+I+GF +N     A + F  M      P   + AS+  + + L +N
Sbjct: 139 FNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEEN 198

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
                   V      R +  ED V   N+L+  Y + G++E+A  LF  +          
Sbjct: 199 AGYRYGKEVHCHVLRRMELVED-VSVINSLMSFYLRIGQMEKAEFLFRNMK--------- 248

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN--TMIS-----GYIHVLD 248
               R++VSWN++I  YA  G+ + A E+F + +  +T   +  T++S      ++H L 
Sbjct: 249 ---SRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQ 305

Query: 249 MEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI-- 302
           + +  + ++ + HP    DT   NA++S YA+    + AL  F  + +K+L+SWN+++  
Sbjct: 306 VAKGIHGYI-IRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDA 364

Query: 303 ---AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
              +GCET+      + L   M  EG +PD  T  +I+   + +  +    + H    + 
Sbjct: 365 FTESGCETH-----LVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRF 419

Query: 360 VI----PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG---------- 405
            +        + N ++  YA+CG +  A  IF  +   +NVV+ N+MI G          
Sbjct: 420 GLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDA 479

Query: 406 ---------------------CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
                                 A + F  +AL LF  ++   + P  +T +S+L ACAH 
Sbjct: 480 YAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHM 539

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
             V   RQ    ++     + R+    + +D+  + G +  A  L    P + D  ++ A
Sbjct: 540 ASVHMLRQCHGYVIRACFNDVRLN--GAFIDMYSKCGSVFGAYKLFLSSP-QKDLVMFTA 596

Query: 505 LLGACRVH 512
           ++G   +H
Sbjct: 597 MVGGFAMH 604



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 12/153 (7%)

Query: 2   ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER--- 58
           I  Y K   +  A KLF   PQ+D+V +  M+ G+ +  G G  EEA  +F  M E    
Sbjct: 567 IDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGF-AMHGMG--EEALRIFSYMLELGVK 623

Query: 59  -DCVTWNTVISGYAKTGEMEEALRLFNSMPARN-----VVSWNAMISGFLQNGDVANAIE 112
            D V    V+   +  G ++E  ++FNS+   +     +  +  ++    + G + +A  
Sbjct: 624 PDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYT 683

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
           F  RMP   +A++   + G  +     E  RV+
Sbjct: 684 FVTRMPIEANANIWGTLLGACRTHHEVELGRVV 716



 Score = 42.0 bits (97), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 13/172 (7%)

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL- 428
           L+ +YA+ GA+     +F EM   ++ V WN ++ G A  GF +   E+ +  R+  ++ 
Sbjct: 19  LLNLYAKSGALDYCNKLFGEMD-QRDPVIWNIVLSGLA--GFQSHEAEVMRLFRAMHMVN 75

Query: 429 ---PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL-E 484
              P  +T   VL  CA   L E+  +   S V + G+E       +L+ +  + G +  
Sbjct: 76  EAKPNSVTIAIVLPVCAR--LREDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCS 133

Query: 485 DAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENST 534
           DA      + F+ D   W A++     +   E A     A++K  ++P  +T
Sbjct: 134 DAYAAFNRIEFK-DVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYAT 184


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 204/662 (30%), Positives = 307/662 (46%), Gaps = 111/662 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
            ++ Y K   + +A+ +FD MP RDVV+WN + S Y++    GF ++   +F  M     
Sbjct: 182 FVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNC---GFPQKGLNVFREMVLDGV 238

Query: 57  ERDCVTWNTVIS---------------GYA-KTGEME-------------------EALR 81
           + D VT + ++S               G+A K G +E                   EA  
Sbjct: 239 KPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQA 298

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGE 137
           +F+ MP RNV++WN++ S ++  G     +  F  M       D  ++S+++    Q  +
Sbjct: 299 VFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKD 358

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           L     +    VK G   D     V     L+  Y     V EA+ +FD +P        
Sbjct: 359 LKSGKTIHGFAVKHGMVED-----VFVCTALVNLYANCLCVREAQTVFDLMP-------- 405

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-------------------------- 228
                RN+V+WNS+  CY   G       +F +M                          
Sbjct: 406 ----HRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLK 461

Query: 229 -------------LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
                        +  D F  N ++S Y   + + EA  +F  +PH +  +WN +++ Y 
Sbjct: 462 SGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYF 521

Query: 276 QIGNLELALDFFKRMPQKNL----VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
                E  L  F +M +  +    ++W+ +I GC  N   E A+++F +MQ  G KPD  
Sbjct: 522 TNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDET 581

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEM 390
           T  SIL   S    L +G +IH  V +     D+   NAL+ MYA+CG +  +R +F+ M
Sbjct: 582 TIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMM 641

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
            + K+V SWN MI     HG   EAL LF+ M    V P   TF  VLSAC+H+ LVEEG
Sbjct: 642 PI-KDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEG 700

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
            Q F SM  ++ +EP  EH+  +VDI  R G LE+A   I+ MP EP    W A L  CR
Sbjct: 701 VQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCR 760

Query: 511 VHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGY 570
           V+ NVELA+++A+ L +++P  S  YV L+N+      W +A+++R LMK   I K  G 
Sbjct: 761 VYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGC 820

Query: 571 SW 572
           SW
Sbjct: 821 SW 822



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 146/631 (23%), Positives = 272/631 (43%), Gaps = 115/631 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-------- 52
            I  Y K + +  AR++FD++  RDVV+WN + + Y++    GF ++   +F        
Sbjct: 81  FIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVN---CGFPQQGLNVFRKMGLNKV 137

Query: 53  --------DIMPE-----------------------RDCVTWNTVISGYAKTGEMEEALR 81
                    I+P                         D    +  ++ YAK   + EA  
Sbjct: 138 KANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQT 197

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGE 137
           +F+ MP R+VV+WN++ S ++  G     +  F  M       D  ++S ++S      +
Sbjct: 198 VFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQD 257

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           L     +    +K      G  + V   N L+  Y     V EA+ +FD +P        
Sbjct: 258 LKSGKAIHGFALK-----HGMVENVFVSNALVNLYESCLCVREAQAVFDLMP-------- 304

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDME 250
                RN+++WNS+  CY   G       +F +M    ++ D  + ++++     + D++
Sbjct: 305 ----HRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLK 360

Query: 251 EASNLF-VKMPH---PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
               +    + H    D     A+V+ YA    +  A   F  MP +N+V+WNS+ + C 
Sbjct: 361 SGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSL-SSCY 419

Query: 307 TNKDY-EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDV 364
            N  + +  + +F +M + G KPD  T  SIL   S + DL  G  IH   V   ++ DV
Sbjct: 420 VNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDV 479

Query: 365 PINNALITMYARCGAIVEARIIFEEM---------------------------------- 390
            + NAL+++YA+C  + EA+++F+ +                                  
Sbjct: 480 FVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRD 539

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
           ++  + ++W+ +IGGC  +    EA+E+F+ M++    P   T  S+L AC+ +  +  G
Sbjct: 540 EVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMG 599

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
           ++     V  +  +  +    +LVD+  + G L  + ++   MP + D   W  ++ A  
Sbjct: 600 KE-IHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIK-DVFSWNTMIFANG 657

Query: 511 VHNNVELAQVAAEALM--KVEPENSTPYVLL 539
           +H N + A    E ++   V+P+++T   +L
Sbjct: 658 MHGNGKEALSLFEKMLLSMVKPDSATFTCVL 688



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 192/405 (47%), Gaps = 36/405 (8%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----G 119
           N  I  Y K   +E A R+F+ + AR+VV+WN++ + ++  G     +  F +M      
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138

Query: 120 RDSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            +  ++S+++ G     +L     +   +V+ G   D     V   +  +  Y +   V 
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVED-----VFVSSAFVNFYAKCLCVR 193

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERD 232
           EA+ +FD +P             R++V+WNS+  CY   G       +F +M    ++ D
Sbjct: 194 EAQTVFDLMP------------HRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPD 241

Query: 233 TFSWNTMISGYIHVLDMEEASNLF-VKMPH---PDTLTWNAMVSGYAQIGNLELALDFFK 288
             + + ++S    + D++    +    + H    +    NA+V+ Y     +  A   F 
Sbjct: 242 PVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFD 301

Query: 289 RMPQKNLVSWNSMIAGCETNKDY-EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
            MP +N+++WNS+ A C  N  + +  + +F +M + G KPD    SSIL   S + DL 
Sbjct: 302 LMPHRNVITWNSL-ASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLK 360

Query: 348 LGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
            G  IH    K  ++ DV +  AL+ +YA C  + EA+ +F+ M   +NVV+WN++    
Sbjct: 361 SGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMP-HRNVVTWNSLSSCY 419

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
            + GF  + L +F+ M    V P  +T +S+L AC+    ++ G+
Sbjct: 420 VNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGK 464



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 166/404 (41%), Gaps = 88/404 (21%)

Query: 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208
            +RC    D V   N  I  YG+   VE AR++FD +              R++V+WNS+
Sbjct: 66  ATRCGVMSD-VSIGNAFIHAYGKCKCVEGARRVFDDL------------VARDVVTWNSL 112

Query: 209 IMCYAKAG-----------------------------------DVVSAREI----FEQML 229
             CY   G                                   D+ S +EI        +
Sbjct: 113 SACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGM 172

Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKR 289
             D F  +  ++ Y   L + EA  +F  MPH D +TWN++ S Y   G           
Sbjct: 173 VEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCG----------- 221

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
            PQK L                     +F +M ++G KPD  T S ILS  S + DL  G
Sbjct: 222 FPQKGL--------------------NVFREMVLDGVKPDPVTVSCILSACSDLQDLKSG 261

Query: 350 MQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
             IH    K  ++ +V ++NAL+ +Y  C  + EA+ +F+ M   +NV++WN++     +
Sbjct: 262 KAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMP-HRNVITWNSLASCYVN 320

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
            GF  + L +F+ M    V P  +   S+L AC+    ++ G+        ++G+   + 
Sbjct: 321 CGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKT-IHGFAVKHGMVEDVF 379

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
              +LV++      + +A  +   MP   +   W + L +C V+
Sbjct: 380 VCTALVNLYANCLCVREAQTVFDLMPHR-NVVTWNS-LSSCYVN 421



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 96/200 (48%), Gaps = 5/200 (2%)

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALIT 372
           AIK++   +  G KPD+  F ++    +   D     Q H   T+  V+ DV I NA I 
Sbjct: 24  AIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIH 83

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
            Y +C  +  AR +F+++ + ++VV+WN++     + GF  + L +F+ M   KV    +
Sbjct: 84  AYGKCKCVEGARRVFDDL-VARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPL 142

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           T  S+L  C+    ++ G++     V  +G+   +   ++ V+   +   + +A  +   
Sbjct: 143 TVSSILPGCSDLQDLKSGKE-IHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDL 201

Query: 493 MPFEPDKAVWGALLGACRVH 512
           MP   D   W + L +C V+
Sbjct: 202 MPHR-DVVTWNS-LSSCYVN 219


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 179/545 (32%), Positives = 283/545 (51%), Gaps = 28/545 (5%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G L  AR LFD +PE D   +NT++  Y+ +   +EALRL   +  R ++     +   L
Sbjct: 62  GGLCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVL 121

Query: 103 QNGDVANAIEFFDRMPG--------RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
           +      A+E      G        +     +AL+      G L ++ R   +   R   
Sbjct: 122 KACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRN-- 179

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
               V ++NT+I GY Q G V EA  LF ++     R +G      ++ +  S++   + 
Sbjct: 180 ----VVSWNTMIGGYAQAGEVSEACALFGEM-----RHQG---LLADVFTLVSLLFACSS 227

Query: 215 AGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAM 270
            G++   R +   ML      D    N ++  Y    D+  A   F  MP  + +TW +M
Sbjct: 228 EGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSM 287

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
           +   A+ G+++   D+F++MP++N+VSWN+MI+           + L+ +M+  G  PD 
Sbjct: 288 LCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDE 347

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTV-IPDVPINNALITMYARCGAIVEARIIFEE 389
            T + +LS      DL  G  IH  V      P V + N+L+ MYARCG +  A  +F E
Sbjct: 348 FTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTE 407

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           M   KNV+SWN +IG  A HG A E +  F++M S    P  ITF+ +LSAC+H GL+E 
Sbjct: 408 MPN-KNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEA 466

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           G  +F++M   Y +EP +EH+  +VD++GR G L  A++LIK M  +PD  VWGALLGAC
Sbjct: 467 GEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGAC 526

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
           R+H NVE+ ++  + L+++E      +VL+ N++ +  +W+D  ++R LMK    KK  G
Sbjct: 527 RIHGNVEIGKLVIKQLLELEGITGGLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMG 586

Query: 570 YSWVD 574
            S ++
Sbjct: 587 VSSIE 591



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 175/410 (42%), Gaps = 82/410 (20%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G L ++R  F  M +R+ V+WNT+I GYA+ GE+ EA  LF  M  + +++        
Sbjct: 162 AGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLA-------- 213

Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
                              D  +L +L+      G L E  R LV C     G       
Sbjct: 214 -------------------DVFTLVSLLFACSSEGNL-EVGR-LVHCHMLVSGSRVDRIL 252

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
            N L+  YG+ G +  A + FD +P+            +N+V+W SM+   AK G V + 
Sbjct: 253 GNALLDMYGKCGDLWMAHRCFDMMPI------------KNVVTWTSMLCAQAKHGSVDAV 300

Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT----------- 266
           R+ FEQM ER+  SWN MIS Y+    + E  +L+ +M      PD  T           
Sbjct: 301 RDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQN 360

Query: 267 ------------------------WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
                                    N+++  YA+ G ++ A+  F  MP KN++SWN +I
Sbjct: 361 GDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVII 420

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--V 360
                +   +  +  F  M  +   PD  TF  +LS  S    L  G    + + +   V
Sbjct: 421 GALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNV 480

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            P+V     ++ +  R G + +A  + ++M +  +VV W A++G C  HG
Sbjct: 481 EPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHG 530



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 157/392 (40%), Gaps = 92/392 (23%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISS-------------RGSGFLEEARYLFDIM----- 55
           +R+ F EM  R+VVSWN MI GY  +             R  G L +   L  ++     
Sbjct: 168 SRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSS 227

Query: 56  ------------------PERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM 97
                                D +  N ++  Y K G++  A R F+ MP +NVV+W +M
Sbjct: 228 EGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSM 287

Query: 98  ISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA---------------- 141
           +    ++G V    ++F++MP R+  S +A++S  +Q G L E                 
Sbjct: 288 LCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDE 347

Query: 142 ---ARVLVKCGSRCD-GGEDLVRAY-------------NTLIVGYGQRGRVEEARKLFDK 184
              A VL  CG   D     ++  Y             N+L+  Y + G+V+ A  LF +
Sbjct: 348 FTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTE 407

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMI 240
           +P             +N++SWN +I   A  G        F  M+      D  ++  ++
Sbjct: 408 MP------------NKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLL 455

Query: 241 SGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-N 294
           S   H   +E     F  M       P+   +  MV    + G+L  A++  K M  K +
Sbjct: 456 SACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPD 515

Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
           +V W +++  C  + + E   KL I+  +E E
Sbjct: 516 VVVWGALLGACRIHGNVEIG-KLVIKQLLELE 546



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 112/273 (41%), Gaps = 58/273 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
           M+    K   +   R  F++MP+R++VSWN MIS Y+     G L E   L++      I
Sbjct: 287 MLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQ---CGRLHETLDLYNRMRSLGI 343

Query: 55  MPE---------------------------RD------CVTWNTVISGYAKTGEMEEALR 81
            P+                           RD          N+++  YA+ G+++ A+ 
Sbjct: 344 TPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIG 403

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           LF  MP +NV+SWN +I     +G     + FF  M       D  +   L+S    +G 
Sbjct: 404 LFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSA-CSHGG 462

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           L EA     +  +R    E  V  Y  ++   G+RG + +A  L   + +          
Sbjct: 463 LLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSI---------- 512

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
            K ++V W +++      G+V   + + +Q+LE
Sbjct: 513 -KPDVVVWGALLGACRIHGNVEIGKLVIKQLLE 544


>gi|302784770|ref|XP_002974157.1| hypothetical protein SELMODRAFT_100028 [Selaginella moellendorffii]
 gi|300158489|gb|EFJ25112.1| hypothetical protein SELMODRAFT_100028 [Selaginella moellendorffii]
          Length = 553

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 173/558 (31%), Positives = 297/558 (53%), Gaps = 53/558 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++ G+    +  +AR LF+ MPQ+++V W VM+SGY + RG    + A+ +FD  P RD 
Sbjct: 32  LLEGFSLAGDFDRARALFEAMPQQNLVGWVVMMSGY-AQRGQH--DRAKEIFDWAPSRDA 88

Query: 61  VTWNTVISGYAKT-GEM-EEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
             WN +IS Y ++ GE+ +EA  +F  MP  + V+WN +I+G+ + G   +AI+ F R+P
Sbjct: 89  TLWNVMISSYTQSPGELLQEARFVFQRMPCHDAVTWNTLIAGYAEGGLADDAIDLFRRIP 148

Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEE 177
            R   S ++++S   Q+G L EA  +        DG  +L V A+N +   Y Q G +  
Sbjct: 149 ERSVRSRTSILSAYAQSGSLREAKEMF-------DGISELDVVAWNVMAGAYAQAGNIAT 201

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           A+ +FD+IP            KRN +SW  ++  ++ AG V  ++ +F  M ERD+ +W+
Sbjct: 202 AKLMFDRIP------------KRNSISWYVLLSAFSHAGMVGESQGLFATMPERDSLAWS 249

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
            ++  Y    D+  +   F +MP  +  +WN +V  YAQ G ++ A D F RM  ++ V 
Sbjct: 250 NLLLVYCQAGDLSMSKEAFARMPQREVFSWNLIVRSYAQAGFMDEATDAFNRMEGRSSVV 309

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           W+++++    ++++E   +++       + P+       L+ +S    L +  Q  Q+  
Sbjct: 310 WSTILSFHAQHRNWERVKEIY------DKTPE-------LNATSATAMLGVYSQTGQLEQ 356

Query: 358 KTVIPDVPIN------NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
                D  I       NA+++ Y + G + +AR +  E    K+ VSW ++I   A +G 
Sbjct: 357 AKSEFDAMIERDSVSWNAIVSAYCQHGKLSQARAMMPE----KDTVSWTSIIQAYAQNGH 412

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             EA +LF  M      P  +TF  +L AC H GL E  R  F +M  ++G+ P  +H+ 
Sbjct: 413 TDEAFDLFHRMLLEGDAPDEVTFFGILGACGHNGLTERARAWFVAMSADFGVVPVFDHYC 472

Query: 472 SLVDIVGRHGRLEDAMDLIK----GMPFEPDKAV-WGALLGACRVHNNVELAQVAAEALM 526
            L+++VG  G+LE A ++++    G+    D++V W  LL A ++H +VELA+ AA+   
Sbjct: 473 CLINVVGTAGKLELAQEMLRSVRDGLAGGEDESVAWTTLLAASKIHGDVELARAAAKNAC 532

Query: 527 KVEPENSTPYVLLYNMYA 544
            +E   S+PY+LL ++ A
Sbjct: 533 GLETRGSSPYMLLSHVEA 550


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 195/583 (33%), Positives = 292/583 (50%), Gaps = 77/583 (13%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP--ARNVVSWNAMISGFL 102
           L+   YL  +    D  +   ++  Y K G    A ++F+ MP  + +VVSW A+IS + 
Sbjct: 72  LQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYS 131

Query: 103 QNGDVANAIEFFDRM-----------PGRDSASLSALVSGLIQNGELDEAARVLVKCGSR 151
            NG V  A   F RM            G D  SL ALVS               V CGS 
Sbjct: 132 SNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSA------------CAVGCGSN 179

Query: 152 C----DGGEDLVRAY---------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
           C         LV  Y         N+++  Y     V  A ++F+ IP+           
Sbjct: 180 CLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIE---------- 229

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN----TMI-------------- 240
           +R++VSWNS+I  +   G+   A   FE M+   T +      T+I              
Sbjct: 230 QRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVET 289

Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
           S ++H       S+L V     D +   A++  +A+ GNL LA + F  +  KN+V W++
Sbjct: 290 SSWVHEYISSRHSSLLVA---KDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSA 346

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGE------KPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
           MIAG E     E A++LF QM +EG       KP+  T  S+++  S +        IH+
Sbjct: 347 MIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHK 406

Query: 355 MVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEM-KLLKNVVSWNAMIGGCASHGFA 412
               T +  D  I +ALI M A+CG I   R +F EM +  + VVSW++MIG    HG  
Sbjct: 407 YAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEG 466

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS 472
             ALELF  MR+    P  IT+ISVLSAC+HAGLVE+G+  F SM  +YG+ P  +H+A 
Sbjct: 467 KRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYAC 526

Query: 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532
           LVD++GR G L++A ++I  MP + D A+WG+LL AC +H N +L ++  + ++ ++  +
Sbjct: 527 LVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNS 586

Query: 533 STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
              +VLL NMY D GRWDD   +R+ ++ + ++K  G S+++ 
Sbjct: 587 VGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEI 629



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 112/491 (22%), Positives = 201/491 (40%), Gaps = 97/491 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQR--DVVSWNVMISGYISSRGSGFLEEARYLFDIM--- 55
           ++  Y K      A ++FDEMP+   DVVSW  +IS Y S   +G ++EA   F  M   
Sbjct: 93  LVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSS---NGCVDEAFXAFGRMRWM 149

Query: 56  --------------------------PERDCVTWNTVISG-------------------- 69
                                        +C+   + + G                    
Sbjct: 150 RGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHM 209

Query: 70  YAKTGEMEEALRLFNSMP--ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS- 126
           Y+   ++  A R+FN +P   R+VVSWN++ISGF  NG+   A+  F+ M    ++++  
Sbjct: 210 YSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEP 269

Query: 127 ------ALVSGLIQNGELDEAARVLVKCGSRCDG---GEDLVRAYNTLIVGYGQRGRVEE 177
                 AL+    + G ++ ++ V     SR       +D+V     L+  + + G +  
Sbjct: 270 NRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVV-VLTALLDMHARCGNLAL 328

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
           AR++FD +       EG     +N+V W++MI  Y +      A  +F QML        
Sbjct: 329 AREIFDGV-------EG-----KNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGV 376

Query: 238 TMISGYIHVLDMEEASNLF-----VKMPHP---------DTLTWNAMVSGYAQIGNLELA 283
            +    + ++ +  A +         M H          D    +A++   A+ G++E  
Sbjct: 377 EVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHG 436

Query: 284 LDFFKRMPQ--KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
              F  M +  + +VSW+SMI     + + + A++LF +M+  G +P+  T+ S+LS  S
Sbjct: 437 RQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACS 496

Query: 342 GIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
               +  G      + K   + P       L+ +  R G + EA  +   M +  ++  W
Sbjct: 497 HAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALW 556

Query: 400 NAMIGGCASHG 410
            +++  C  HG
Sbjct: 557 GSLLAACHLHG 567



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 115/268 (42%), Gaps = 20/268 (7%)

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
           +  K+   WNS+IA   T ++ + A+  F +MQ      +  TF ++L   + +  L   
Sbjct: 13  ISHKDTFHWNSLIAKNAT-QNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 350 MQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEM-KLLKNVVSWNAMIGGCA 407
           +Q+H  +T+  +  D     AL+  Y +CG    A  +F+EM +   +VVSW A+I   +
Sbjct: 72  LQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYS 131

Query: 408 SHGFATEALELFKSMRSFK-------VLPTYITFISVLSACA---HAGLVEEGRQHFKSM 457
           S+G   EA   F  MR  +            ++  +++SACA    +  +  G      +
Sbjct: 132 SNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSA-VHGL 190

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP-DKAVWGALLGACRVHNNVE 516
           V +YG         S+V +      +  A  +  G+P E  D   W +L+    ++   E
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAE 250

Query: 517 LA-----QVAAEALMKVEPENSTPYVLL 539
            A      + +E    VEP   T   LL
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALL 278


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 183/533 (34%), Positives = 297/533 (55%), Gaps = 40/533 (7%)

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG-DVANAIEFFDRMPG 119
           + WN ++S Y K G +  A +LF++MP R+VVS+N MIS  ++N  D  + +  + +M  
Sbjct: 95  LIWNKLLSLYLKFGHIHHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKK 154

Query: 120 RDSASLSALVSGLIQNGELDEAARV-------LVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
            D        +GLI   +   A R+        V+CG   +   + V +  +L+ GY ++
Sbjct: 155 EDVKPNHITFAGLIGACDGLIALRLRGIFHAHTVRCGLSSN---EFVGS--SLVDGYAKQ 209

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER- 231
            ++E+A K F++I             + ++VSWN MI   A+      A  +F QML+  
Sbjct: 210 MKLEDAIKAFNEI------------MELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGN 257

Query: 232 ---DTFSWNTMISGYIHVLDMEEA-----SNLFVKMPHPDTLTWNAMVSGYAQI-GNLEL 282
              D F+  ++I       D++       S + + + H +T  +NA+++ Y++    +  
Sbjct: 258 VRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAH-ETPIYNALITMYSKCEKGVAS 316

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
            +  F  + + N++SW +MI+G   N+  E AI LF +M   G + +  +FSSIL +   
Sbjct: 317 PVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGN 376

Query: 343 IVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLK-NVVSWN 400
           + +L  G QIH  + K+    D+ +NNALI MY++CG++ +A ++F  MK+ K +VVS  
Sbjct: 377 LANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSKCGSLEDAHLVF--MKMGKHDVVSCT 434

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
            MI     HG   EALE+   M+S  ++P  +TF+  L AC+H GLVEEG + FK M+ +
Sbjct: 435 TMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCLYACSHGGLVEEGVRVFKIMIED 494

Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
           + ++P+ EHFA +VD++GR GRL +A + I  M  E D  VW  LLGACRVH  + L + 
Sbjct: 495 HNLKPKREHFACVVDMLGRAGRLNEAENFIDEMGIESDVLVWETLLGACRVHGEMVLGEK 554

Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +A+ +M+++P    PYVLL N+YA+ G W+D   VR  + S+ +KK  G SWV
Sbjct: 555 SAQKIMELQPGRHGPYVLLANIYAERGSWEDKVMVREKLVSHGLKKQVGCSWV 607



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 158/328 (48%), Gaps = 46/328 (14%)

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI-HVLDMEEASNLFVKMP 260
           I+ WN ++  Y K G +  A ++F+ M  RD  S+NTMIS  + +  D  +   L+ KM 
Sbjct: 94  ILIWNKLLSLYLKFGHIHHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMK 153

Query: 261 ----HPDTLTW-----------------------------------NAMVSGYAQIGNLE 281
                P+ +T+                                   +++V GYA+   LE
Sbjct: 154 KEDVKPNHITFAGLIGACDGLIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLE 213

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A+  F  + + +LVSWN MI GC  N   E A+++F QM     + D  T +SI+   S
Sbjct: 214 DAIKAFNEIMELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCS 273

Query: 342 GIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARI-IFEEMKLLKNVVSW 399
              DL  GMQ H    K  +  + PI NALITMY++C   V + + IF  +    N++SW
Sbjct: 274 KPGDLKHGMQFHGSAIKLGLAHETPIYNALITMYSKCEKGVASPVKIFGSIS-EPNIISW 332

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMV 458
            AMI G   +    EA+ LFK M    V     +F S+L    +   +E+G+Q H + + 
Sbjct: 333 TAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQIHARIIK 392

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           + +G++  + +  +L+D+  + G LEDA
Sbjct: 393 SWFGLDLSVNN--ALIDMYSKCGSLEDA 418



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 210/465 (45%), Gaps = 72/465 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMIS-------------------------- 34
           ++S Y+K   +  A +LFD MP+RDVVS+N MIS                          
Sbjct: 100 LLSLYLKFGHIHHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKP 159

Query: 35  ------GYISSRGSGFLEEARYLFDIMPERDCVTWN-----TVISGYAKTGEMEEALRLF 83
                 G I +         R +F     R  ++ N     +++ GYAK  ++E+A++ F
Sbjct: 160 NHITFAGLIGACDGLIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAF 219

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM-PGR---DSASLSALVSGLIQNGELD 139
           N +   ++VSWN MI G  +N    +A+  F +M  G    D  +L++++    + G+L 
Sbjct: 220 NEIMELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLK 279

Query: 140 EAARVLVKCGSRCD-GGEDLVRAYNTLIVGYGQRGR-VEEARKLFDKIPVNCDRGEGNVR 197
              +     GS    G       YN LI  Y +  + V    K+F  I            
Sbjct: 280 HGMQFH---GSAIKLGLAHETPIYNALITMYSKCEKGVASPVKIFGSIS----------- 325

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEAS 253
            + NI+SW +MI  + +      A  +F++ML      + FS+++++  Y ++ ++E+  
Sbjct: 326 -EPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGK 384

Query: 254 NLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
            +  ++       D    NA++  Y++ G+LE A   F +M + ++VS  +MI     + 
Sbjct: 385 QIHARIIKSWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHG 444

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTK--TVIPDVP 365
             + A+++  +M+ EG  PD  TF   L   S  G+V+   G+++ +++ +   + P   
Sbjct: 445 KGKEALEILAEMKSEGLVPDGVTFLGCLYACSHGGLVE--EGVRVFKIMIEDHNLKPKRE 502

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
               ++ M  R G + EA    +EM +  +V+ W  ++G C  HG
Sbjct: 503 HFACVVDMLGRAGRLNEAENFIDEMGIESDVLVWETLLGACRVHG 547



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 7/191 (3%)

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEE 389
           H FS IL   +   DL  GM +H  + K  I   + I N L+++Y + G I  A  +F+ 
Sbjct: 60  HQFSQILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLFDT 119

Query: 390 MKLLKNVVSWNAMIGGCASHGF-ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
           M   ++VVS+N MI     + + A + + L+  M+   V P +ITF  ++ AC   GL+ 
Sbjct: 120 MP-RRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGAC--DGLIA 176

Query: 449 -EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
              R  F +     G+       +SLVD   +  +LEDA+     +  E D   W  ++ 
Sbjct: 177 LRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEI-MELDLVSWNIMID 235

Query: 508 ACRVHNNVELA 518
            C  +N+ E A
Sbjct: 236 GCARNNSKEHA 246


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 193/626 (30%), Positives = 313/626 (50%), Gaps = 72/626 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-------- 52
           ++S +V+   +  A  +F  M +R++ SWNV++ GY  +   G  +EA  L+        
Sbjct: 147 LLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKA---GLFDEALDLYHRMLWVGV 203

Query: 53  --DI------------MP-----------------ERDCVTWNTVISGYAKTGEMEEALR 81
             D+            MP                 E D    N +I+ Y K G++  A  
Sbjct: 204 KPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARL 263

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F+ MP R+ +SWNAMISG+ +NG     +  F  M       D  +++++++     G+
Sbjct: 264 VFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGD 323

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
            D   R +     R + G D    +N+LI  Y   G +EEA  +F +             
Sbjct: 324 -DRLGRQIHGYVLRTEFGRD-PSIHNSLIPMYSSVGLIEEAETVFSRTEC---------- 371

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
             R++VSW +MI  Y        A E ++ M    +  D  +   ++S    + +++   
Sbjct: 372 --RDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGM 429

Query: 254 NLFVKMPHPDTLTW----NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
           NL         +++    N+++  YA+   ++ AL+ F    +KN+VSW S+I G   N 
Sbjct: 430 NLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINN 489

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINN 368
               A+  F +M +   KP+  T   +LS  + I  L  G +IH    +T +  D  + N
Sbjct: 490 RCFEALFFFREM-IRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPN 548

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           A++ MY RCG +  A   F    +   V SWN ++ G A  G    A ELF+ M    V 
Sbjct: 549 AILDMYVRCGRMEYAWKQF--FSVDHEVTSWNILLTGYAERGKGAHATELFQRMVESNVS 606

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P  +TFIS+L AC+ +G+V EG ++F SM  +Y I P ++H+A +VD++GR G+LE+A +
Sbjct: 607 PNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYE 666

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
            I+ MP +PD AVWGALL +CR+H++VEL ++AAE + + +  +   Y+LL N+YAD G+
Sbjct: 667 FIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGK 726

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVD 574
           WD   EVR +M+ N +    G SWV+
Sbjct: 727 WDKVAEVRKMMRQNGLIVDPGCSWVE 752



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 144/285 (50%), Gaps = 9/285 (3%)

Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
           S + + M H      NA++S + + GNL  A   F RM ++NL SWN ++ G      ++
Sbjct: 130 SYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFD 189

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALI 371
            A+ L+ +M   G KPD +TF  +L    G+ +L  G +IH  V +     DV + NALI
Sbjct: 190 EALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALI 249

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
           TMY +CG +  AR++F++M   ++ +SWNAMI G   +G   E L LF  M  + V P  
Sbjct: 250 TMYVKCGDVNTARLVFDKMP-NRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDL 308

Query: 432 ITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
           +T  SV++AC   G    GRQ H   +  E+G +P I +  SL+ +    G +E+A  + 
Sbjct: 309 MTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHN--SLIPMYSSVGLIEEAETVF 366

Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
                  D   W A++     + N  + Q A E    +E E   P
Sbjct: 367 SRTECR-DLVSWTAMISG---YENCLMPQKALETYKMMEAEGIMP 407



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 179/391 (45%), Gaps = 43/391 (10%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PH 261
           N+++  + + G++V A  +F +M +R+ FSWN ++ GY      +EA +L+ +M      
Sbjct: 145 NALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVK 204

Query: 262 PDTLTW-----------------------------------NAMVSGYAQIGNLELALDF 286
           PD  T+                                   NA+++ Y + G++  A   
Sbjct: 205 PDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLV 264

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F +MP ++ +SWN+MI+G   N      ++LF  M      PD  T +S+++    + D 
Sbjct: 265 FDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDD 324

Query: 347 HLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
            LG QIH  V +T    D  I+N+LI MY+  G I EA  +F   +  +++VSW AMI G
Sbjct: 325 RLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTE-CRDLVSWTAMISG 383

Query: 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465
             +     +ALE +K M +  ++P  IT   VLSAC+    ++ G  +   +  + G+  
Sbjct: 384 YENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMG-MNLHEVAKQKGLVS 442

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
                 SL+D+  +   ++ A+++      E +   W +++   R++N    A      +
Sbjct: 443 YSIVANSLIDMYAKCKCIDKALEIFHS-TLEKNIVSWTSIILGLRINNRCFEALFFFREM 501

Query: 526 MKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
           ++    NS   V + +  A +G      E+ 
Sbjct: 502 IRRLKPNSVTLVCVLSACARIGALTCGKEIH 532


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 186/625 (29%), Positives = 312/625 (49%), Gaps = 67/625 (10%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGF----LEEARYLFDIMPER-- 58
           ++ R ++A AR++FD +P  D  ++N +I  Y S RG       L  +   F + P +  
Sbjct: 43  HIARGQLALARQVFDRIPAPDARAYNALIRAY-SWRGPFHAAIDLYRSMLYFRVPPNKYT 101

Query: 59  -------------------------------DCVTWNTVISGYAKTGEMEEALRLFNSMP 87
                                          D      +I  Y +      A  +F  MP
Sbjct: 102 FPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMP 161

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELDEAA 142
            R+VV+WNAM++G+  +G   +AI     M  R     ++++L +L+  L Q+G L +  
Sbjct: 162 MRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGT 221

Query: 143 RVLVKC-GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
            V   C  +  D  E+ V     L+  Y +   +  A ++F  + V            RN
Sbjct: 222 SVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTV------------RN 269

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQML-ERDTFSWNTMISGYIHVL----DMEEASNLF 256
            V+W+++I  +     +  A  +F+ ML E   F   T ++  + V     D+   + L 
Sbjct: 270 EVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLH 329

Query: 257 VKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
             +     H D    N+++S YA+ G +  A   F  +  K+ +S+ ++++G   N   E
Sbjct: 330 ALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAE 389

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALI 371
            A  +F +MQ    +PD  T  S++   S +  L  G   H  ++ + +  +  I N+LI
Sbjct: 390 EAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLI 449

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            MYA+CG I  +R +F++M   +++VSWN MI G   HG   EA  LF SM++    P  
Sbjct: 450 DMYAKCGRIDLSRQVFDKMPA-RDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDD 508

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           +TFI +++AC+H+GLV EG+  F +M ++YGI PR+EH+  +VD++ R G L++A   I+
Sbjct: 509 VTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQ 568

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
            MP + D  VWGALLGACR+H N++L +  +  + K+ PE +  +VLL N+++  GR+D+
Sbjct: 569 SMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDE 628

Query: 552 ANEVRLLMKSNNIKKPTGYSWVDFS 576
           A EVR++ K    KK  G SW++ +
Sbjct: 629 AAEVRIIQKVKGFKKSPGCSWIEIN 653



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 131/531 (24%), Positives = 209/531 (39%), Gaps = 126/531 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY---------------ISSRGSGFL 45
           +I  Y++      A  +F +MP RDVV+WN M++GY               +  RG G  
Sbjct: 140 LIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRG-GLR 198

Query: 46  EEARYLFDIMP--------------------------ERDCVTWNTVISGYAKTGEMEEA 79
             A  L  ++P                          E   +    ++  YAK   +  A
Sbjct: 199 PNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYA 258

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRDSASLSALVSGLIQNGE 137
            R+F+ M  RN V+W+A+I GF+    +  A   F  M   G    S +++ S L     
Sbjct: 259 CRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCAS 318

Query: 138 L------DEAARVLVKCGSRCD--GGEDLVR------------------------AYNTL 165
           L       +   +L K G   D   G  L+                         +Y  L
Sbjct: 319 LADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGAL 378

Query: 166 IVGYGQRGRVEEARKLFDK----------------IPV----------NCDRGEGNVR-F 198
           + GY Q G+ EEA  +F K                IP            C  G   +R  
Sbjct: 379 LSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGL 438

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY-IHVLDMEEASNLFV 257
                  NS+I  YAK G +  +R++F++M  RD  SWNTMI+GY IH L  +EA+ LF+
Sbjct: 439 ALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLG-KEATTLFL 497

Query: 258 KMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
            M +    PD +T+  +++  +  G +     +F  M  K  +        C  +    G
Sbjct: 498 SMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARG 557

Query: 314 AI--KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALI 371
               + +  +Q    K D   + ++L       ++ LG Q+ +M+ K + P+   N  L+
Sbjct: 558 GFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQK-LGPEGTGNFVLL 616

Query: 372 T-MYARCGAIVEA---RIIFEEMKLLKNV--VSW-------NAMIGGCASH 409
           + +++  G   EA   RII +++K  K     SW       +A +GG  SH
Sbjct: 617 SNIFSAAGRFDEAAEVRII-QKVKGFKKSPGCSWIEINGSLHAFVGGDQSH 666



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 6/249 (2%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
           D   W   +  +   G L LA   F R+P  +  ++N++I        +  AI L+  M 
Sbjct: 32  DNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSML 91

Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIV 381
                P+++TF  +L   S + DL  G  IH       +  D+ ++ ALI +Y RC    
Sbjct: 92  YFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFG 151

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL-PTYITFISVLSA 440
            A  +F +M  +++VV+WNAM+ G A+HG    A+     M+    L P   T +S+L  
Sbjct: 152 PAANVFAKMP-MRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPL 210

Query: 441 CAHAGLVEEGRQHFKSMVNEY--GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
            A  G + +G       +  Y    E ++    +L+D+  +   L  A  +  GM    +
Sbjct: 211 LAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVR-N 269

Query: 499 KAVWGALLG 507
           +  W AL+G
Sbjct: 270 EVTWSALIG 278


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 185/600 (30%), Positives = 309/600 (51%), Gaps = 77/600 (12%)

Query: 18  FDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF----DIMPE--------RDCVT--- 62
           FD +  RDV +WN+MISGY  +  S  +     LF     + P+        + C T   
Sbjct: 42  FDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID 101

Query: 63  --------------WNTVISG-----YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQ 103
                         W+  ++      Y++   +  A  LF+ MP R++ SWNAMISG+ Q
Sbjct: 102 GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQ 161

Query: 104 NGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN 163
           +G+   A+   + +   DS ++ +L+S   + G+ +    +                  +
Sbjct: 162 SGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTI------------------H 203

Query: 164 TLIVGYGQRGRV-EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           +  + +G    +  + +K+FD++ V            R+++SWNS+I  Y      + A 
Sbjct: 204 SYSIKHGLESELLRDCQKVFDRMYV------------RDLISWNSIIKAYELNEQPLRAI 251

Query: 223 EIFEQM-LERDTFSWNTMIS--------GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
            +F++M L R      T+IS        G I      +   L       D    NA+V  
Sbjct: 252 SLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVM 311

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHT 332
           YA++G ++ A   F  +P  +++SWN++I+G   N     AI+++  M+ EGE   ++ T
Sbjct: 312 YAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGT 371

Query: 333 FSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
           + S+L   S    L  GM++H +++   +  DV +  +L  MY +CG + +A  +F ++ 
Sbjct: 372 WVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP 431

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
            + N V WN +I     HG   +A+ LFK M    V P +ITF+++LSAC+H+GLV+EG+
Sbjct: 432 RV-NSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQ 490

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
             F+ M  +YGI P ++H+  +VD+ GR G+LE A+  IK M  +PD ++WGALL ACRV
Sbjct: 491 WCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRV 550

Query: 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           H NV+L ++A+E L +VEPE+   +VLL NMYA  G+W+  +E+R +     ++K  G+S
Sbjct: 551 HGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWS 610



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 135/500 (27%), Positives = 224/500 (44%), Gaps = 57/500 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y + + +  AR LFDEMP RD+ SWN MISGY     SG  +EA  L + +   D 
Sbjct: 124 LIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQ---SGNAKEALTLSNGLRAMDS 180

Query: 61  VTWNTVISGYAKTGE--------------------MEEALRLFNSMPARNVVSWNAMISG 100
           VT  +++S   + G+                    + +  ++F+ M  R+++SWN++I  
Sbjct: 181 VTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELLRDCQKVFDRMYVRDLISWNSIIKA 240

Query: 101 FLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
           +  N     AI  F  M       D  +L +L S L Q G++  A R +     R     
Sbjct: 241 YELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDI-RACRSVQGFTLRKGWFL 299

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           + +   N ++V Y + G V+ AR +F+ +P N D           ++SWN++I  YA+ G
Sbjct: 300 EDITIGNAVVVMYAKLGLVDSARAVFNWLP-NTD-----------VISWNTIISGYAQNG 347

Query: 217 DVVSAREIFEQMLERDTF-----SWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW 267
               A E++  M E         +W +++        + +   L  ++     + D    
Sbjct: 348 FASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVV 407

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
            ++   Y + G LE AL  F ++P+ N V WN++IA    +   E A+ LF +M  EG K
Sbjct: 408 TSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVK 467

Query: 328 PDRHTFSSILSM--SSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEA 383
           PD  TF ++LS    SG+VD   G    +M+     + P +     ++ MY R G +  A
Sbjct: 468 PDHITFVTLLSACSHSGLVD--EGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETA 525

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
               + M L  +   W A++  C  HG     L    S   F+V P ++ +  +LS    
Sbjct: 526 LKFIKSMSLQPDASIWGALLSACRVHGNVD--LGKIASEHLFEVEPEHVGYHVLLSNMYA 583

Query: 444 AGLVEEGRQHFKSMVNEYGI 463
           +    EG    +S+ +  G+
Sbjct: 584 SAGKWEGVDEIRSIAHGKGL 603


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 193/627 (30%), Positives = 311/627 (49%), Gaps = 67/627 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG--YISSRGSGF-LEEARYLF--DIM 55
           +I  Y K   +  A+ +F+ +  ++VVS+N +I G  +  S+GS F LE  R +   +I+
Sbjct: 49  LIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNIL 108

Query: 56  PER----------------------------------DCVTWNTVISGYAKTGEMEEALR 81
           P+                                   D    +++++ Y K G + EA +
Sbjct: 109 PDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARK 168

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGE 137
           LF+ MP RN+VSW  MISG+        A+  F  M       +    ++++S L+    
Sbjct: 169 LFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEF 228

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           +D   +V   C    +G  + V   N L+  Y + G +  +  LF+              
Sbjct: 229 VDSGKQV--HCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCS----------- 275

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
             +N ++W+++I  Y++AGD   A ++F +M         F+   ++     V  +EE  
Sbjct: 276 -DKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGK 334

Query: 254 N----LFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
                L          T  A+V  YA+ G    A   F  + + +LV W S+IAG   N 
Sbjct: 335 QTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNG 394

Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINN 368
             E A+ ++ +MQ+    P+  T +S+L   S +  L  G QIH    K  + P++ I +
Sbjct: 395 KNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRS 454

Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
           AL TMYA+CG++ E  +IF  M L +++VSWNAMI G + +G   EALELF+ MR     
Sbjct: 455 ALSTMYAKCGSLEEGVLIFRRM-LQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTK 513

Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
           P +ITF++VLSAC+H G+V+ G  +F  M +E+ + PR+EH+A +VD++ R G+L +A +
Sbjct: 514 PDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKE 573

Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
            I+    +    +W  LL ACR H N EL   A E LM++    S+ YVLL ++Y  +GR
Sbjct: 574 FIESAIIDHGMCLWRILLPACRNHCNYELGAYAGEKLMELGSRESSAYVLLSSIYTAMGR 633

Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVDF 575
             D   VR +MK   ++K TG SW++ 
Sbjct: 634 LADVVRVRRMMKVRGVRKETGCSWIEL 660



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/459 (27%), Positives = 222/459 (48%), Gaps = 33/459 (7%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVAN--AIEFFDRMPGR- 120
           N +I  YAK G +  A  +F ++  +NVVS+N +I G   NG   +   +E F RM    
Sbjct: 47  NNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANN 106

Query: 121 ---DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
              D+ +   + +    N   +  AR +   G +    +D V   ++L+  Y + G V E
Sbjct: 107 ILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASIDD-VFVGSSLVNFYCKVGCVFE 165

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDT 233
           ARKLFD++P            +RN+VSW +MI  YA       A  +F  M       + 
Sbjct: 166 ARKLFDRMP------------ERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNE 213

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW----NAMVSGYAQIGNLELALDFFKR 289
           F + +++S  +    ++    +   +     L +    NA+V+ YA+ GNL  +L  F+ 
Sbjct: 214 FVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEM 273

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
              KN ++W+++I G     D   A+KLF +M   G  P   T   +L   S +  +  G
Sbjct: 274 CSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEG 333

Query: 350 MQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
            Q H  + K+     +    AL+ MYA+ G   +AR  F+ + L  ++V W ++I G   
Sbjct: 334 KQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFL-LEPDLVLWTSIIAGYVQ 392

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRI 467
           +G   EAL ++  M+  K+LP  +T  SVL AC++   +E+G+Q H +++  +YG+ P +
Sbjct: 393 NGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTI--KYGLGPEL 450

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
              ++L  +  + G LE+ + + + M  + D   W A++
Sbjct: 451 SIRSALSTMYAKCGSLEEGVLIFRRM-LQRDIVSWNAMI 488


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 199/630 (31%), Positives = 316/630 (50%), Gaps = 79/630 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           M+S  V+  E   A K+F +MP+RDV SWNVM+ GY  +   GFLEEA  L+  M     
Sbjct: 135 MLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKA---GFLEEALDLYHRMLWAGA 191

Query: 56  -PE--------RDCV-------------------------TWNTVISGYAKTGEMEEALR 81
            P+        R C                            N +++ YAK G++E A +
Sbjct: 192 RPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARK 251

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVSGLIQN 135
           +F+ M   + +SWNAMI+G  +N +    +E F  M      P   + +   + SGL+ +
Sbjct: 252 VFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSD 311

Query: 136 GELDEAARVL-VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
            +  +    L VK G   D     V   N+LI  Y   GR+ EA  +F ++         
Sbjct: 312 LDFAKEIHALAVKRGFATD-----VAFCNSLIQMYSSLGRMGEACTVFSRMET------- 359

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASN 254
                R+ +SW +MI  Y K G    A E++  M   +    +  ++  +         +
Sbjct: 360 -----RDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLD 414

Query: 255 LFVKMPHPDT--------LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG-C 305
           + +K+    T        +  NA+V  YA+   +E A++ FK MP K+++SW+SMIAG C
Sbjct: 415 VGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFC 474

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDV 364
             +K++E A+  F  M  +  KP+  TF + L+  +    L  G +IH  V +  +  + 
Sbjct: 475 FNHKNFE-ALYYFRHMLAD-VKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEG 532

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            + NAL+ +Y +CG    A   F      K+VVSWN M+ G  +HG    AL  F  M  
Sbjct: 533 YVPNALLDLYVKCGQTGYAWAQFGAHGT-KDVVSWNIMLAGFVAHGHGDIALSFFNEMLE 591

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
               P  +TF+++L  C+ AG+V +G + F SM  +Y I P ++H+A +VD++ R GRL 
Sbjct: 592 TGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLT 651

Query: 485 DAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
           +  + I  MP  PD AVWGALL  CR+H N+EL ++AA+ ++++EP ++  +VLL ++YA
Sbjct: 652 EGYNFINRMPITPDAAVWGALLNGCRIHRNIELGELAAKIVLELEPNDAGYHVLLSDLYA 711

Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           D G W + ++VR  M+   ++   G SWV+
Sbjct: 712 DAGMWAEVSKVRKTMRVKGLEHDYGCSWVE 741



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 200/402 (49%), Gaps = 29/402 (7%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PG 119
           N ++S   + GE   A ++F  MP R+V SWN M+ G+ + G +  A++ + RM      
Sbjct: 133 NAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGAR 192

Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            D  +   ++       +L     V         G E  V   N L+  Y + G VE AR
Sbjct: 193 PDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVE--VDVLNALVTMYAKCGDVEAAR 250

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD------T 233
           K+FD + +             + +SWN+MI  + +  +  +  E+F  MLE +      T
Sbjct: 251 KVFDGMSLT------------DCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMT 298

Query: 234 FSWNTMISGYIHVLDM-EEASNLFVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMP 291
            +  T+ SG +  LD  +E   L VK     D    N+++  Y+ +G +  A   F RM 
Sbjct: 299 ITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRME 358

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
            ++ +SW +MI+G E N   + A++++  M+V    PD  T +S L+  + +  L +G++
Sbjct: 359 TRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIK 418

Query: 352 IHQMVT-KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +H++ T K  I  + + NAL+ MYA+   I +A  +F+ M   K+V+SW++MI G   + 
Sbjct: 419 LHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMP-DKDVISWSSMIAGFCFNH 477

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
              EAL  F+ M +  V P  +TFI+ L+ACA  G +  G++
Sbjct: 478 KNFEALYYFRHMLA-DVKPNSVTFIAALAACAATGSLRCGKE 518



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 8/242 (3%)

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           NAM+S   + G    A   F +MP++++ SWN M+ G       E A+ L+ +M   G +
Sbjct: 133 NAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGAR 192

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARII 386
           PD +TF  +L    G+ DL +G ++H  V +  +  +V + NAL+TMYA+CG +  AR +
Sbjct: 193 PDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKV 252

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+ M  L + +SWNAMI G   +      LELF  M   +V P  +T  SV  A   +GL
Sbjct: 253 FDGMS-LTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVA---SGL 308

Query: 447 VE--EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           +   +  +   ++  + G    +    SL+ +    GR+ +A  +   M    D   W A
Sbjct: 309 LSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETR-DAMSWTA 367

Query: 505 LL 506
           ++
Sbjct: 368 MI 369


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 144/378 (38%), Positives = 224/378 (59%), Gaps = 1/378 (0%)

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
           F  +I    ++I  YA+ GD  SAR +F++M E +  +WN +++      D+E A ++F 
Sbjct: 134 FDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFG 193

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
            MP  +  +WN M++GYA+ G L LA   F  MP ++ VSW++MI G   N  ++ A   
Sbjct: 194 CMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGF 253

Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV-PINNALITMYAR 376
           F ++  E  + +  + + +LS  +       G  +H  V K     V  +NNALI  Y++
Sbjct: 254 FRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSK 313

Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
           CG +  AR++F+ M + +++VSW ++I G A HG   EA++LF  M    V P  ITFIS
Sbjct: 314 CGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFIS 373

Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
           +L AC+H+GLVEEG   F  M N YGIEP IEH+  +VD+ GR  RL+ A + I  MP  
Sbjct: 374 LLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVS 433

Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
           P+  +W  LLGAC +H N+E+A++    L +++P+NS  +VLL N+YA  G+W D + +R
Sbjct: 434 PNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIR 493

Query: 557 LLMKSNNIKKPTGYSWVD 574
             M  +++KK  G+S ++
Sbjct: 494 RTMTEHSMKKTPGWSMIE 511



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 158/332 (47%), Gaps = 38/332 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +IS Y +  +   AR++FDEM + +VV+WN +++        G +E A+ +F  MP R+ 
Sbjct: 144 LISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRC---GDVEGAQDVFGCMPVRNL 200

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN +++GYAK GE+  A R+F  MP R+ VSW+ MI GF  NG    A  FF  +   
Sbjct: 201 TSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLRE 260

Query: 121 D----SASLSALVSGLIQNGELDEAARVL----VKCGSRCDGGEDLVRAYNTLIVGYGQR 172
           +      SL+ ++S   Q G   E  ++L     K G    G  +     N LI  Y + 
Sbjct: 261 EIRTNEVSLTGVLSACAQAGAF-EFGKILHGFVEKAGFLYVGSVN-----NALIDTYSKC 314

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER- 231
           G V  AR +F  +PV            R+IVSW S+I   A  G    A ++F +M E  
Sbjct: 315 GNVAMARLVFQNMPV-----------ARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESG 363

Query: 232 ---DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELA 283
              D  ++ +++    H   +EE   LF KM +     P    +  MV  Y +   L+ A
Sbjct: 364 VRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKA 423

Query: 284 LDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
            +F   MP   N + W +++  C  + + E A
Sbjct: 424 YEFICEMPVSPNAIIWRTLLGACSIHGNIEMA 455



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 161/366 (43%), Gaps = 55/366 (15%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
            T+IS YA+ G+   A R+F+ M   NVV+WNA+++   + GDV  A + F  MP R+  
Sbjct: 142 TTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLT 201

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S + +++G  + GEL  A RV  +   R     D V +++T+IVG+   G  +EA   F 
Sbjct: 202 SWNGMLAGYAKAGELGLARRVFYEMPLR-----DEV-SWSTMIVGFAHNGCFDEAFGFFR 255

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW-----NT 238
           ++     R E     + N VS   ++   A+AG     + I    +E+  F +     N 
Sbjct: 256 ELL----REE----IRTNEVSLTGVLSACAQAGAFEFGK-ILHGFVEKAGFLYVGSVNNA 306

Query: 239 MISGYIHVLDMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
           +I  Y    ++  A  +F  MP   ++ +W ++++G A  G  E A+  F  M +     
Sbjct: 307 LIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEES---- 362

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL--SMSSGIVDLHLGMQIHQM 355
                                      G +PD  TF S+L     SG+V+   G+     
Sbjct: 363 ---------------------------GVRPDGITFISLLYACSHSGLVEEGCGLFSKMK 395

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
               + P +     ++ +Y R   + +A     EM +  N + W  ++G C+ HG   E 
Sbjct: 396 NLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHG-NIEM 454

Query: 416 LELFKS 421
            EL K+
Sbjct: 455 AELVKA 460



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 132/332 (39%), Gaps = 47/332 (14%)

Query: 249 MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM-----IA 303
           +  A  LF   P+PDT   N ++   +       +L  F ++ ++  +S +S      + 
Sbjct: 52  LHYALRLFHHFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALK 111

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTF--SSILSMSSGIVDLHLGMQIHQMVTKTVI 361
               ++     I+L  Q    G   D H F  ++++SM +   D     ++   +++   
Sbjct: 112 AVANSRHLRPGIQLHSQAFRHGF--DAHIFVGTTLISMYAECGDSGSARRVFDEMSE--- 166

Query: 362 PDVPINNALITM-------------------------------YARCGAIVEARIIFEEM 390
           P+V   NA++T                                YA+ G +  AR +F EM
Sbjct: 167 PNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEM 226

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
            L ++ VSW+ MI G A +G   EA   F+ +   ++    ++   VLSACA AG  E G
Sbjct: 227 PL-RDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFG 285

Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
           +      V + G         +L+D   + G +  A  + + MP       W +++    
Sbjct: 286 KI-LHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLA 344

Query: 511 VHNNVELAQVAAEALMK--VEPENSTPYVLLY 540
           +H   E A      + +  V P+  T   LLY
Sbjct: 345 MHGCGEEAIQLFHEMEESGVRPDGITFISLLY 376


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 197/685 (28%), Positives = 333/685 (48%), Gaps = 132/685 (19%)

Query: 8   RREMAKARKLFDEMPQRDV--VSWNVMISGYISSRGSGFLEEAR----YLFDIMPERDCV 61
            RE  KA  +F +     +  V++  +I+   S R    LE  R    ++     + D +
Sbjct: 78  HREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRS---LEHGRKIHRHMLTCNYQPDMI 134

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--- 118
             N ++S Y K G ++EA  +F+SMP +NVVSW +MISG+ + G+  NAI  + +M    
Sbjct: 135 LQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSG 194

Query: 119 ------------------------------------GRDSASLSALVSGLIQNGELDEA- 141
                                               G D  + +AL+S   +  ++ +A 
Sbjct: 195 HIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAI 254

Query: 142 ---ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA----RKLFDK---------- 184
              +R+++K         DL+ ++ ++I G+ Q G   EA    R++  +          
Sbjct: 255 NVFSRIIIK---------DLI-SWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVF 304

Query: 185 ----------IPVNCDRGEGNVRFK----RNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
                     +  +C R    +  K     ++ +  S+   YAK G + SAR +F  + +
Sbjct: 305 GSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEK 364

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT-------------------- 266
            D  +WN +I+G+  V + +E+S+ F +M H    P+ +T                    
Sbjct: 365 PDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQV 424

Query: 267 ---------------WNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKD 310
                           N+++S Y++  NL  AL  F+ +  K ++VSWN+++  C     
Sbjct: 425 HSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQ 484

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNA 369
               ++L   M     KPD  T +++L  S  I    +G QIH  + K+ +  D+ ++NA
Sbjct: 485 AGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNA 544

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           LI MY +CG++  AR +F+ +    +++SW+++I G A  G   EA ELF++MR   V P
Sbjct: 545 LINMYTKCGSLECARKMFDSIGN-PDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKP 603

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
             ITF+ +L+AC+H G+VEEG + +++M  +Y I P  EH + +VD++ R G L+ A D 
Sbjct: 604 NEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDF 663

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
           IK MPF PD  VW  LL AC+VH N+E+ + AAE ++K++P NS   V+L N++A  G W
Sbjct: 664 IKQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHW 723

Query: 550 DDANEVRLLMKSNNIKKPTGYSWVD 574
            D   +R  M+  ++ K  G SW++
Sbjct: 724 KDFARLRSSMRRMDVGKVPGQSWIE 748


>gi|9279602|dbj|BAB01060.1| unnamed protein product [Arabidopsis thaliana]
          Length = 598

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 186/565 (32%), Positives = 293/565 (51%), Gaps = 63/565 (11%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+   N ++  YI     GFL  A  LFD MP+RD V+WNT+ISGY   G++E+A  LF 
Sbjct: 34  DIYVSNRILDSYIKF---GFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFT 90

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            M                   DV             D  S S L+ G+      D   +V
Sbjct: 91  CMKR--------------SGSDV-------------DGYSFSRLLKGIASVKRFDLGEQV 123

Query: 145 ---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
              ++K G  C+     V   ++L+  Y +  RVE+A + F +I             + N
Sbjct: 124 HGLVIKGGYECN-----VYVGSSLVDMYAKCERVEDAFEAFKEIS------------EPN 166

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQM-------LERDTFS-WNTMISG--YIHVLDMEE 251
            VSWN++I  + +  D+ +A  +   M       ++  TF+   T++    + ++L    
Sbjct: 167 SVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVH 226

Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRM-PQKNLVSWNSMIAGCETNKD 310
           A  L + + H  T+  NAM+S YA  G++  A   F  +   K+L+SWNSMIAG      
Sbjct: 227 AKVLKLGLQHEITIC-NAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFAQKGL 285

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNA 369
            E A+K F  ++    K D + FS++L   S +  L LG QIH + TK+  + +  + ++
Sbjct: 286 SEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISS 345

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           LI MY++CG I  AR  F+++    + V+WNAMI G A HG    +L+LF  M +  V  
Sbjct: 346 LIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKL 405

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
            ++TF ++L+AC+H GL++EG +    M   Y I+PR+EH+A+ VD++GR G +  A +L
Sbjct: 406 DHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKEL 465

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
           I+ MP  PD  V    LG CR    +E+A   A  L+++EPE+   YV L +MY+D+ +W
Sbjct: 466 IESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKW 525

Query: 550 DDANEVRLLMKSNNIKKPTGYSWVD 574
           ++   V+ +MK   +KK  G+SW++
Sbjct: 526 EEKASVKKMMKERGVKKVPGWSWIE 550



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 127/529 (24%), Positives = 230/529 (43%), Gaps = 93/529 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
           ++  Y+K   +  A  LFDEMP+RD VSWN MISGY S    G LE+A  LF  M     
Sbjct: 41  ILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTS---CGKLEDAWCLFTCMKRSGS 97

Query: 57  -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
                                              E +    ++++  YAK   +E+A  
Sbjct: 98  DVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFE 157

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNG 136
            F  +   N VSWNA+I+GF+Q  D+  A      M  +     D+ + + L++ L    
Sbjct: 158 AFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPM 217

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
             +   +V  K      G +  +   N +I  Y   G V +A+++FD        G G  
Sbjct: 218 FCNLLKQVHAKVLKL--GLQHEITICNAMISSYADCGSVSDAKRVFD--------GLGG- 266

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG---------- 242
              ++++SWNSMI  +A+ G    A + F  +    ++ D ++++ ++            
Sbjct: 267 --SKDLISWNSMIAGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLG 324

Query: 243 -YIHVLDMEEA--SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN-LVSW 298
             IH L  +    SN FV          ++++  Y++ G +E A   F+++  K+  V+W
Sbjct: 325 QQIHALATKSGFVSNEFV---------ISSLIVMYSKCGIIESARKCFQQISSKHSTVAW 375

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
           N+MI G   +   + ++ LF QM  +  K D  TF++IL+  S    +  G+++  ++  
Sbjct: 376 NAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEP 435

Query: 359 T--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
              + P +    A + +  R G + +A+ + E M L  + +     +G C + G    A 
Sbjct: 436 VYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMAT 495

Query: 417 ELFKSMRSFKVLP-TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464
           ++   +   ++ P  + T++S+    +     EE +   K M+ E G++
Sbjct: 496 QVANHL--LEIEPEDHFTYVSLSHMYSDLKKWEE-KASVKKMMKERGVK 541


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 171/517 (33%), Positives = 270/517 (52%), Gaps = 51/517 (9%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
           ++  YA   ++  A ++F+ +P RNV+  N MI  ++ NG     ++ F  M G      
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCG------ 133

Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
                    N   D      V     C G         T+++G    G   +        
Sbjct: 134 --------CNVRPDHYTFPCVLKACSCSG---------TIVIGRKIHGSATK-------- 168

Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
                     V     +   N ++  Y K G +  AR + ++M  RD  SWN+++ GY  
Sbjct: 169 ----------VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQ 218

Query: 246 VLDMEEASNLF-----VKMPHPDTLTWNAMVSGYAQIG--NLELALDFFKRMPQKNLVSW 298
               ++A  +      VK+ H D  T  +++   +     N+    D F +M +K+LVSW
Sbjct: 219 NQRFDDALEVCREMESVKISH-DAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSW 277

Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT- 357
           N MI     N     A++L+ +M+ +G +PD  + +S+L        L LG +IH  +  
Sbjct: 278 NVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIER 337

Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
           K +IP++ + NALI MYA+CG + +AR +FE MK  ++VVSW AMI      G   +A+ 
Sbjct: 338 KKLIPNLLLENALIDMYAKCGCLEKARDVFENMKS-RDVVSWTAMISAYGFSGRGCDAVA 396

Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
           LF  ++   ++P  I F++ L+AC+HAGL+EEGR  FK M + Y I PR+EH A +VD++
Sbjct: 397 LFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLL 456

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
           GR G++++A   I+ M  EP++ VWGALLGACRVH++ ++  +AA+ L ++ PE S  YV
Sbjct: 457 GRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYV 516

Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           LL N+YA  GRW++   +R +MKS  +KK  G S V+
Sbjct: 517 LLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVE 553



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 154/367 (41%), Gaps = 87/367 (23%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           ++  Y   +++A ARK+FDE+P+R+V+  NVMI  Y++   +GF  E   +F  M     
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVN---NGFYGEGVKVFGTMCGCNV 136

Query: 56  -PE--------RDCVTWNTVISG-------------------------YAKTGEMEEALR 81
            P+        + C    T++ G                         Y K G + EA  
Sbjct: 137 RPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 196

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGE 137
           + + M  R+VVSWN+++ G+ QN    +A+E    M       D+ ++++L+   + N  
Sbjct: 197 VLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPA-VSNTT 255

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK---------- 184
            +    V     K G +       + ++N +I  Y +     EA +L+ +          
Sbjct: 256 TENVMYVKDMFFKMGKKS------LVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDA 309

Query: 185 ------IPVNCDRG--------EGNVRFKR---NIVSWNSMIMCYAKAGDVVSAREIFEQ 227
                 +P   D           G +  K+   N++  N++I  YAK G +  AR++FE 
Sbjct: 310 VSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFEN 369

Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELA 283
           M  RD  SW  MIS Y       +A  LF K+      PD++ +   ++  +  G LE  
Sbjct: 370 MKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEG 429

Query: 284 LDFFKRM 290
              FK M
Sbjct: 430 RSCFKLM 436


>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 140/348 (40%), Positives = 221/348 (63%), Gaps = 2/348 (0%)

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288
            E D F+   ++  Y  V  +E A  LF +MP     TWNAM++G+A+ G++++AL+ F+
Sbjct: 114 FEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFR 173

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE-GEKPDRHTFSSILSMSSGIVDLH 347
            MP +N+VSW +MI+G   +K Y  A+ LF++M+ E G  P+  T +SI    + +  L 
Sbjct: 174 LMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALE 233

Query: 348 LGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           +G ++     K     ++ ++NA++ MYA+CG I  A  +F E+  L+N+ SWN+MI G 
Sbjct: 234 IGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGL 293

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
           A HG   + L+L+  M      P  +TF+ +L AC H G+VE+GR  FKSM   + I P+
Sbjct: 294 AVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPK 353

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM 526
           +EH+  +VD++GR G+L +A ++I+ MP +PD  +WGALLGAC  H+NVELA++AAE+L 
Sbjct: 354 LEHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELAEIAAESLF 413

Query: 527 KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            +EP N   YV+L N+YA  G+WD   ++R +MK + I K  G+S+++
Sbjct: 414 ALEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIE 461



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 28/287 (9%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G LE AR LFD MP R   TWN +++G+A+ G+M+ AL LF  MP+RNVVSW  MISG+ 
Sbjct: 132 GTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYS 191

Query: 103 QNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGED 157
           ++     A+  F RM        ++ +L+++       G L+   R  V+  +R +G   
Sbjct: 192 RSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQR--VEAYARKNGFFK 249

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
            +   N ++  Y + G+++ A K+F++I        G++   RN+ SWNSMIM  A  G+
Sbjct: 250 NLYVSNAVLEMYAKCGKIDVAWKVFNEI--------GSL---RNLCSWNSMIMGLAVHGE 298

Query: 218 VVSAREIFEQMLERDTFSWNTMISGYI----HVLDMEEASNLFVKMPH-----PDTLTWN 268
                ++++QML   T   +    G +    H   +E+  ++F  M       P    + 
Sbjct: 299 CCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYG 358

Query: 269 AMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGA 314
            MV    + G L  A +  +RMP K + V W +++  C  + + E A
Sbjct: 359 CMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELA 405



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 134/300 (44%), Gaps = 55/300 (18%)

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
            G E  + A   L+  Y + G +E ARKLFD++PV            R + +WN+M+  +
Sbjct: 112 SGFEPDLFAATALLDMYTKVGTLELARKLFDQMPV------------RGVPTWNAMMAGH 159

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTW 267
           A+ GD+  A E+F  M  R+  SW TMISGY       EA  LF++M       P+ +T 
Sbjct: 160 ARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTL 219

Query: 268 NAMVSGYAQIGNLELAL---------DFFKRM---------------------------P 291
            ++   +A +G LE+            FFK +                            
Sbjct: 220 ASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGS 279

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
            +NL SWNSMI G   + +    +KL+ QM  EG  PD  TF  +L   +    +  G  
Sbjct: 280 LRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRH 339

Query: 352 IHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           I + +T +  +IP +     ++ +  R G + EA  + + M +  + V W A++G C+ H
Sbjct: 340 IFKSMTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFH 399



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 41/231 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG--------------SGFLE 46
           M++G+ +  +M  A +LF  MP R+VVSW  MISGY  S+                G + 
Sbjct: 155 MMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMP 214

Query: 47  EARYLFDIMPE-----------------------RDCVTWNTVISGYAKTGEMEEALRLF 83
            A  L  I P                        ++    N V+  YAK G+++ A ++F
Sbjct: 215 NAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVF 274

Query: 84  NSMPA-RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI---QNGELD 139
           N + + RN+ SWN+MI G   +G+    ++ +D+M G  ++       GL+    +G + 
Sbjct: 275 NEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMV 334

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
           E  R + K  +        +  Y  ++   G+ G++ EA ++  ++P+  D
Sbjct: 335 EKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMPMKPD 385


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 229/377 (60%), Gaps = 33/377 (8%)

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK 258
           K ++++ N++I  Y K  +++ A  +F++M ER   SWN +ISG++ +  M  A  LF +
Sbjct: 127 KSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDE 186

Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
           MP+   ++W A++SGY +IG+   ALD F+                              
Sbjct: 187 MPNRTIVSWTAIISGYTRIGSYIDALDVFR------------------------------ 216

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARC 377
            +MQ+ G +PD  +  S+L   + +  L  G  IH    +  ++    I NALI MY +C
Sbjct: 217 -EMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKC 275

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G I +A  +F++M+  ++V+SW+ MIGG A+HG   EA+ +F+ M+   + P  ITF+ +
Sbjct: 276 GCIDQACQLFDQMR-GRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGL 334

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           LSACAHAG  EEG  +F +M  ++ IEP IEH+ SLVD++GR GRL  A+D+++ MP +P
Sbjct: 335 LSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKP 394

Query: 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
           D  +WG+LL +CR H N+E+A +A E L ++EP+++  YVLL N+YAD+G+WDD + +R 
Sbjct: 395 DSKIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRK 454

Query: 558 LMKSNNIKKPTGYSWVD 574
           L++S  +KK  G S ++
Sbjct: 455 LVRSKRMKKTPGCSLIE 471



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 161/329 (48%), Gaps = 35/329 (10%)

Query: 16  KLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGE 75
           + F    +  +++ N +I  Y        L +A  LFD M ER  ++WN +ISG+ + G+
Sbjct: 120 QFFKFGKKSHLITENALIDMYTKCDN---LLDAHNLFDEMHERGAISWNGIISGHVRLGQ 176

Query: 76  MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSG 131
           M  A  LF+ MP R +VSW A+ISG+ + G   +A++ F  M       D AS+ +++  
Sbjct: 177 MRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPA 236

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
             + G L+    + + C    +G        N LI  Y + G +++A +LFD++     R
Sbjct: 237 CAKLGALETGKWIHMFCAR--NGLLRRTCICNALIEMYTKCGCIDQACQLFDQM-----R 289

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVL 247
           G       R+++SW++MI   A  G V  A  IFE+M    ++ +  ++  ++S   H  
Sbjct: 290 G-------RDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAG 342

Query: 248 DMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSM 301
             EE    F  M       P+   + ++V    + G L  ALD  ++MP K +   W S+
Sbjct: 343 FWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSL 402

Query: 302 IAGCETNKDYEGAIKLFIQMQ-VEGEKPD 329
           ++ C T+ + E A+   I M+ +E  +PD
Sbjct: 403 LSSCRTHCNIEVAV---IAMEHLEELEPD 428



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 163/394 (41%), Gaps = 74/394 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y K   +  A  LFDEM +R  +SWN +ISG++     G +  AR LFD MP R  
Sbjct: 136 LIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVR---LGQMRRARALFDEMPNRTI 192

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM----------------PA---------------- 88
           V+W  +ISGY + G   +AL +F  M                PA                
Sbjct: 193 VSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMF 252

Query: 89  -------RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
                  R     NA+I  + + G +  A + FD+M GRD  S S ++ GL  +G++ EA
Sbjct: 253 CARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREA 312

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             +  +          +   +  L+      G  EE    FD +       + +   +  
Sbjct: 313 IAIFERMKQTNIKPNGIT--FVGLLSACAHAGFWEEGLMYFDTM-------KKDFHIEPE 363

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQM-LERDTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           I  + S++    +AG +  A +I E+M ++ D+  W +++S      ++E A    + M 
Sbjct: 364 IEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVA---VIAME 420

Query: 261 H------PDTLTWNAMVSGYAQIGNLE--------LALDFFKRMPQKNLVSWNSM----I 302
           H       DT  +  + + YA +G  +        +     K+ P  +L+  N++    +
Sbjct: 421 HLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVNNVAQEFV 480

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
           +G + +K Y   I   +++    +  D+H    I
Sbjct: 481 SG-DDSKPYSKEIFWLLELLAFHQDMDKHILEII 513



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 155/377 (41%), Gaps = 65/377 (17%)

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           + +  L +  F    MI       DM+ AS LF ++  P+   +NAM+          L 
Sbjct: 11  VIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLT 70

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
           +DF+K+M ++   S        +T++D      L +        PD  TF  ++   + +
Sbjct: 71  IDFYKQMLREYRNS--------QTSED------LIL--------PDEFTFPFVVKACARL 108

Query: 344 VDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLL--------- 393
              +LG Q+H Q         +   NALI MY +C  +++A  +F+EM            
Sbjct: 109 GLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGII 168

Query: 394 ---------------------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
                                + +VSW A+I G    G   +AL++F+ M+   + P   
Sbjct: 169 SGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEA 228

Query: 433 TFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           + ISVL ACA  G +E G+  H     N  G+  R     +L+++  + G ++ A  L  
Sbjct: 229 SIISVLPACAKLGALETGKWIHMFCARN--GLLRRTCICNALIEMYTKCGCIDQACQLFD 286

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENSTPYVLLYNMYADVGRW 549
            M    D   W  ++G    H  V  A    E + +  ++P N   +V L +  A  G W
Sbjct: 287 QMRGR-DVISWSTMIGGLANHGKVREAIAIFERMKQTNIKP-NGITFVGLLSACAHAGFW 344

Query: 550 DDANEVRLLMKSNNIKK 566
           ++      LM  + +KK
Sbjct: 345 EEG-----LMYFDTMKK 356



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/337 (19%), Positives = 142/337 (42%), Gaps = 55/337 (16%)

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
           + F      ++++ NA+I  + +  ++ +A   FD M  R + S + ++SG ++ G++  
Sbjct: 120 QFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRR 179

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
           A  +  +  +R       + ++  +I GY + G   +A  +F ++ +           + 
Sbjct: 180 ARALFDEMPNRT------IVSWTAIISGYTRIGSYIDALDVFREMQI--------AGIEP 225

Query: 201 NIVSWNSMIMCYAKAGDVVSAREIF----EQMLERDTFSWNTMISGYIHVLDMEEASNLF 256
           +  S  S++   AK G + + + I        L R T   N +I  Y     +++A  LF
Sbjct: 226 DEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLF 285

Query: 257 VKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL----VSWNSMIAGCETNKDYE 312
            +M   D ++W+ M+ G A  G +  A+  F+RM Q N+    +++  +++ C     +E
Sbjct: 286 DQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWE 345

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALIT 372
             +  F  M     K D H                            + P++    +L+ 
Sbjct: 346 EGLMYFDTM-----KKDFH----------------------------IEPEIEHYGSLVD 372

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           +  R G + +A  I E+M +  +   W +++  C +H
Sbjct: 373 LLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTH 409


>gi|357144887|ref|XP_003573448.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Brachypodium distachyon]
          Length = 530

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 166/443 (37%), Positives = 251/443 (56%), Gaps = 23/443 (5%)

Query: 140 EAARVLV----KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           +AAR L+      G+R      L+ + N+L+    + G +  AR LFD++PV        
Sbjct: 101 DAARSLLDETPPAGAR--SAHSLLVSRNSLLASLLRSGDLPAARALFDQMPV-------- 150

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
               R++VSWNSM+   AKAG +  A E+F QM ER+  SWN ++ G I    +  A   
Sbjct: 151 ----RDVVSWNSMVAGLAKAGRLDCAIELFHQMPERNAASWNAVMCGLIAHGHLARAREW 206

Query: 256 FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN-LVSWNSMIAGCETNKDYEGA 314
           F +MP    ++W  M+SGYA+ G+++ A   F+RM  +N L +WN+MIA    N     A
Sbjct: 207 FEQMPVRSNVSWITMISGYAKAGDVQAAASLFERMENQNDLYAWNAMIACYGQNGCAREA 266

Query: 315 IKLFIQMQVEG--EKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNALI 371
           I +FI+M        P+  TFSS++S  S + +L  G+ +   M +  +  D  +  AL+
Sbjct: 267 ISVFIRMLKPHICVLPNEKTFSSVISACSQLGNLRFGLWVESFMCSLGIELDDHLRTALV 326

Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
            +Y + G I  A  +F  ++  ++VVS++AMI GC  +G  +EA+ LFK M   K++P  
Sbjct: 327 DLYTKSGRIDNAFKLFRGLRT-RDVVSYSAMIVGCGMNGKLSEAIGLFKEMSDAKIVPNA 385

Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
           +TF+ +LSA  HAGL+EE R  F  M ++Y I P +EH+  +VD++GR G+L++A  LI 
Sbjct: 386 VTFVGLLSAYNHAGLMEEARACFAFMSSKYNIRPSMEHYTIMVDLLGRSGKLDEAFQLIM 445

Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
            MP +P  +VWGALL ACR+H NVEL ++ A    ++ P  S  Y+LL N+YA   +WD 
Sbjct: 446 KMPMQPHASVWGALLLACRLHTNVELGEMVASKCFELAPGESGYYILLGNIYAQANKWDK 505

Query: 552 ANEVRLLMKSNNIKKPTGYSWVD 574
              +R  M    + K  G SWV 
Sbjct: 506 VKSLRKTMMEMGLSKMPGSSWVQ 528



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 185/398 (46%), Gaps = 62/398 (15%)

Query: 14  ARKLFDEMP-------QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTV 66
           AR L DE P          +VS N +++  + S   G L  AR LFD MP RD V+WN++
Sbjct: 103 ARSLLDETPPAGARSAHSLLVSRNSLLASLLRS---GDLPAARALFDQMPVRDVVSWNSM 159

Query: 67  ISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS 126
           ++G AK G ++ A+ LF+ MP RN  SWNA++ G + +G +A A E+F++MP R + S  
Sbjct: 160 VAGLAKAGRLDCAIELFHQMPERNAASWNAVMCGLIAHGHLARAREWFEQMPVRSNVSWI 219

Query: 127 ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA-------- 178
            ++SG  + G++  AA +      R +   DL  A+N +I  YGQ G   EA        
Sbjct: 220 TMISGYAKAGDVQAAASLF----ERMENQNDLY-AWNAMIACYGQNGCAREAISVFIRML 274

Query: 179 ---------RKLFDKIPVNCDRGEGNVRFKRNIVSW-------------NSMIMCYAKAG 216
                     K F  +   C +  GN+RF   + S+              +++  Y K+G
Sbjct: 275 KPHICVLPNEKTFSSVISACSQ-LGNLRFGLWVESFMCSLGIELDDHLRTALVDLYTKSG 333

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVS 272
            + +A ++F  +  RD  S++ MI G      + EA  LF +M      P+ +T+  ++S
Sbjct: 334 RIDNAFKLFRGLRTRDVVSYSAMIVGCGMNGKLSEAIGLFKEMSDAKIVPNAVTFVGLLS 393

Query: 273 GYAQIGNLELALDFFKRMPQK-----NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
            Y   G +E A   F  M  K     ++  +  M+     +   + A +L ++M ++   
Sbjct: 394 AYNHAGLMEEARACFAFMSSKYNIRPSMEHYTIMVDLLGRSGKLDEAFQLIMKMPMQ--- 450

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP 365
           P    + ++L        LH  +++ +MV        P
Sbjct: 451 PHASVWGALLL----ACRLHTNVELGEMVASKCFELAP 484



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 160/358 (44%), Gaps = 61/358 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +++  ++  ++  AR LFD+MP RDVVSWN M++G      +G L+ A  LF  MPER+ 
Sbjct: 128 LLASLLRSGDLPAARALFDQMPVRDVVSWNSMVAGLAK---AGRLDCAIELFHQMPERNA 184

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            +WN V+ G    G +  A   F  MP R+ VSW  MISG+ + GDV  A   F+RM  +
Sbjct: 185 ASWNAVMCGLIAHGHLARAREWFEQMPVRSNVSWITMISGYAKAGDVQAAASLFERMENQ 244

Query: 121 -DSASLSALVSGLIQNGELDEAARVLVK---------------------CGS-------- 150
            D  + +A+++   QNG   EA  V ++                     C          
Sbjct: 245 NDLYAWNAMIACYGQNGCAREAISVFIRMLKPHICVLPNEKTFSSVISACSQLGNLRFGL 304

Query: 151 -----RCDGGEDLVRAYNTLIVG-YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
                 C  G +L     T +V  Y + GR++ A KLF  +              R++VS
Sbjct: 305 WVESFMCSLGIELDDHLRTALVDLYTKSGRIDNAFKLFRGLRT------------RDVVS 352

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMP 260
           +++MI+     G +  A  +F++M +     +  ++  ++S Y H   MEEA   F  M 
Sbjct: 353 YSAMIVGCGMNGKLSEAIGLFKEMSDAKIVPNAVTFVGLLSAYNHAGLMEEARACFAFMS 412

Query: 261 -----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
                 P    +  MV    + G L+ A     +MP Q +   W +++  C  + + E
Sbjct: 413 SKYNIRPSMEHYTIMVDLLGRSGKLDEAFQLIMKMPMQPHASVWGALLLACRLHTNVE 470



 Score = 45.4 bits (106), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 17/160 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++  Y K   +  A KLF  +  RDVVS++ MI G      +G L EA  LF  M +   
Sbjct: 325 LVDLYTKSGRIDNAFKLFRGLRTRDVVSYSAMIVG---CGMNGKLSEAIGLFKEMSDAKI 381

Query: 59  --DCVTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNGDVANAI 111
             + VT+  ++S Y   G MEEA   F  M ++     ++  +  M+    ++G +  A 
Sbjct: 382 VPNAVTFVGLLSAYNHAGLMEEARACFAFMSSKYNIRPSMEHYTIMVDLLGRSGKLDEAF 441

Query: 112 EFFDRMPGRDSASLSA---LVSGLIQNGELDEAARVLVKC 148
           +   +MP +  AS+     L   L  N EL E   V  KC
Sbjct: 442 QLIMKMPMQPHASVWGALLLACRLHTNVELGE--MVASKC 479


>gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Glycine max]
          Length = 548

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 182/542 (33%), Positives = 292/542 (53%), Gaps = 29/542 (5%)

Query: 48  ARYLFDIMPERDCVTWNTVISGYAK-----TGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           +R+ F   PE    ++  +I  YA+      G+   A  + N     NVV+ N ++S + 
Sbjct: 19  SRHFFRSEPE----SYAELIDMYARDRALHAGKKLHAHLVTNGFARFNVVASN-LVSFYT 73

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
             G +++A + FD++P  +     AL+    + G  D A  V  +  +      + V   
Sbjct: 74  CCGQLSHARKLFDKIPTTNVRRWIALIGSCARCGFYDHALAVFSEMQAVQGLTPNYVFVI 133

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
            +++   G  G      K+   I + C        F+ +    +S+I+ Y+K   V  AR
Sbjct: 134 PSVLKACGHVGDRITGEKIHGFI-LKCS-------FELDSFVSSSLIVMYSKCAKVEDAR 185

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIG 278
           ++F+ M  +DT + N +++GY+      EA  L   M      P+ +TWN+++SG++Q G
Sbjct: 186 KVFDGMTVKDTVALNAVVAGYVQQGAANEALGLVESMKLMGLKPNVVTWNSLISGFSQKG 245

Query: 279 NLELALDFFKRM----PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
           +     + F+ M     + ++VSW S+I+G   N   + A   F QM   G  P   T S
Sbjct: 246 DQGRVSEIFRLMIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFHPTSATIS 305

Query: 335 SILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLL 393
           ++L   +    + +G +IH     T V  D+ + +AL+ MYA+CG I EAR +F  M   
Sbjct: 306 ALLPACATAARVSVGREIHGYALVTGVEGDIYVRSALVDMYAKCGFISEARNLFSRMPE- 364

Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVLSACAHAGLVEEGRQ 452
           KN V+WN++I G A+HG+  EA+ELF  M    V    ++TF + L+AC+H G  E G++
Sbjct: 365 KNTVTWNSIIFGFANHGYCEEAIELFNQMEKEGVAKLDHLTFTAALTACSHVGDFELGQR 424

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
            FK M  +Y IEPR+EH+A +VD++GR G+L +A  +IK MP EPD  VWGALL ACR H
Sbjct: 425 LFKIMQEKYSIEPRLEHYACMVDLLGRAGKLHEAYCMIKTMPIEPDLFVWGALLAACRNH 484

Query: 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
            +VELA+VAA  LM++EPE++   +LL ++YAD G+W     V+  +K   ++K  G SW
Sbjct: 485 RHVELAEVAAMHLMELEPESAANPLLLSSVYADAGKWGKFERVKKRIKKGKLRKLQGLSW 544

Query: 573 VD 574
           ++
Sbjct: 545 IE 546



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 157/337 (46%), Gaps = 40/337 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----SSRGSGFLEEARYLFDIMP 56
           +I  Y K  ++  ARK+FD M  +D V+ N +++GY+    ++   G +E  + L  + P
Sbjct: 171 LIVMYSKCAKVEDARKVFDGMTVKDTVALNAVVAGYVQQGAANEALGLVESMK-LMGLKP 229

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMISGFLQNGDVANAIE 112
             + VTWN++ISG+++ G+      +F  M A     +VVSW ++ISGF+QN     A +
Sbjct: 230 --NVVTWNSLISGFSQKGDQGRVSEIFRLMIADGVEPDVVSWTSVISGFVQNFRNKEAFD 287

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLV----KCGSRCDGGEDLVRAYNTLIVG 168
            F +M        SA +S L+       AARV V       +   G E  +   + L+  
Sbjct: 288 TFKQMLSHGFHPTSATISALLP--ACATAARVSVGREIHGYALVTGVEGDIYVRSALVDM 345

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y + G + EAR LF ++P            ++N V+WNS+I  +A  G    A E+F QM
Sbjct: 346 YAKCGFISEARNLFSRMP------------EKNTVTWNSIIFGFANHGYCEEAIELFNQM 393

Query: 229 LER-----DTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIG 278
            +      D  ++   ++   HV D E    LF  M       P    +  MV    + G
Sbjct: 394 EKEGVAKLDHLTFTAALTACSHVGDFELGQRLFKIMQEKYSIEPRLEHYACMVDLLGRAG 453

Query: 279 NLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
            L  A    K MP + +L  W +++A C  ++  E A
Sbjct: 454 KLHEAYCMIKTMPIEPDLFVWGALLAACRNHRHVELA 490



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/463 (22%), Positives = 201/463 (43%), Gaps = 100/463 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------- 53
           ++S Y    +++ ARKLFD++P  +V  W  +I    S    GF + A  +F        
Sbjct: 68  LVSFYTCCGQLSHARKLFDKIPTTNVRRWIALIG---SCARCGFYDHALAVFSEMQAVQG 124

Query: 54  -------IMP---------------------------ERDCVTWNTVISGYAKTGEMEEA 79
                  ++P                           E D    +++I  Y+K  ++E+A
Sbjct: 125 LTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDA 184

Query: 80  LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQN 135
            ++F+ M  ++ V+ NA+++G++Q G    A+   + M       +  + ++L+SG  Q 
Sbjct: 185 RKVFDGMTVKDTVALNAVVAGYVQQGAANEALGLVESMKLMGLKPNVVTWNSLISGFSQK 244

Query: 136 GE---LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           G+   + E  R+++      DG E  V ++ ++I G+ Q  R +EA   FD        G
Sbjct: 245 GDQGRVSEIFRLMI-----ADGVEPDVVSWTSVISGFVQNFRNKEA---FDTFKQMLSHG 296

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLD 248
                F     + ++++   A A  V   REI    L    E D +  + ++  Y     
Sbjct: 297 -----FHPTSATISALLPACATAARVSVGREIHGYALVTGVEGDIYVRSALVDMYAKCGF 351

Query: 249 MEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           + EA NLF +MP  +T+TWN+++ G+A  G  E A++ F +M +                
Sbjct: 352 ISEARNLFSRMPEKNTVTWNSIIFGFANHGYCEEAIELFNQMEK---------------- 395

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPI 366
              EG  KL           D  TF++ L+  S + D  LG ++ +++ +  ++ P +  
Sbjct: 396 ---EGVAKL-----------DHLTFTAALTACSHVGDFELGQRLFKIMQEKYSIEPRLEH 441

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
              ++ +  R G + EA  + + M +  ++  W A++  C +H
Sbjct: 442 YACMVDLLGRAGKLHEAYCMIKTMPIEPDLFVWGALLAACRNH 484


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 176/537 (32%), Positives = 288/537 (53%), Gaps = 37/537 (6%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           E D  T N++++ YAK G +E+A R+F+ MP R++V+WN M+ G++ NG  + A+  F  
Sbjct: 139 EHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQE 198

Query: 117 MPG-----RDSASL-SALVSGLIQNGELD--EAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
           M        DS  + +AL +  ++   +   E    +++ G   D     ++   +L+  
Sbjct: 199 MHDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQD-----IKVGTSLLDM 253

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y + G V  AR +F  +P+            R +V+WN MI  YA       A + F QM
Sbjct: 254 YCKCGEVAYARSVFATMPL------------RTVVTWNCMIGGYALNERPDEAFDCFMQM 301

Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH---------PDTLTWNAMVSGYAQIGN 279
              +      + +  +     +  S+L+ +  H         P  +   A++  Y ++G 
Sbjct: 302 -RAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGK 360

Query: 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339
           +E +   F ++  K LVSWN+MIA     + Y  AI LF+++  +   PD  T S+++  
Sbjct: 361 VESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPA 420

Query: 340 SSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
              +  L    QIH  +       +  I NA++ MYAR G +V +R IF++M + K+V+S
Sbjct: 421 FVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKM-VSKDVIS 479

Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
           WN MI G A HG    ALE+F  M+   + P   TF+SVL+AC+ +GLV+EG  HF  M+
Sbjct: 480 WNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLML 539

Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
            EYG+ P+IEH+  + D++GR G L + +  I+ MP +P   VWG+LL A R  N++++A
Sbjct: 540 QEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIA 599

Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
           + AAE + ++E +N+  Y++L +MYAD GRW+D   VRLLMK   +++    S V+ 
Sbjct: 600 EYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVRLLMKEKGLRRTEPISLVEL 656



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/468 (24%), Positives = 205/468 (43%), Gaps = 93/468 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARY--LFDIMP-- 56
           +++ Y K   +  A ++FD MP RD+V+WN+M+ GY+S+ G G L  A +  + D +   
Sbjct: 148 LVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSN-GLGSLALACFQEMHDALEVQ 206

Query: 57  ----------------------------------ERDCVTWNTVISGYAKTGEMEEALRL 82
                                             E+D     +++  Y K GE+  A  +
Sbjct: 207 HDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSV 266

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAA 142
           F +MP R VV+WN MI G+  N     A + F +M             GL    E+  A 
Sbjct: 267 FATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAE----------GL--QVEVVTAI 314

Query: 143 RVLVKCGS-------RCDGGEDLVRAY-------NTLIVGYGQRGRVEEARKLFDKIPVN 188
            +L  C         R   G  + R +         L+  YG+ G+VE + K+F KI   
Sbjct: 315 NLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIA-- 372

Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYI 244
                      + +VSWN+MI  Y        A  +F ++L +    D F+ +T++  ++
Sbjct: 373 ----------NKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFV 422

Query: 245 HVLDMEEASNL---FVKMPHPD-TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
            +  +     +    + + + + TL  NA++  YA+ G++  + + F +M  K+++SWN+
Sbjct: 423 LLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNT 482

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVD---LHLGMQIHQM 355
           MI G   +   + A+++F +M+  G +P+  TF S+L+    SG+VD   +H  + + + 
Sbjct: 483 MIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEY 542

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
               +IP +     +  +  R G + E     E M +      W +++
Sbjct: 543 ---GMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSLL 587



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 136/562 (24%), Positives = 231/562 (41%), Gaps = 76/562 (13%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PG 119
            +++   A  G M+EA+    ++   +    N MI GF   G  A A+  +  M      
Sbjct: 45  KSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGAR 104

Query: 120 RDSASLSALVSGLIQNGELDE---AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            D  +   +V    + G LDE   A  +++K G   D     V   N+L+  Y + G VE
Sbjct: 105 PDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHD-----VYTCNSLVAFYAKLGLVE 159

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           +A ++FD +PV            R+IV+WN M+  Y   G    A   F++M   D    
Sbjct: 160 DAERVFDGMPV------------RDIVTWNIMVDGYVSNGLGSLALACFQEM--HDALEV 205

Query: 237 NTMISGYIHVLD--MEEASNLFVKMPH---------PDTLTWNAMVSGYAQIGNLELALD 285
                G I  L     E S++  K  H          D     +++  Y + G +  A  
Sbjct: 206 QHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARS 265

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F  MP + +V+WN MI G   N+  + A   F+QM+ EG + +  T  ++L+  +    
Sbjct: 266 VFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTES 325

Query: 346 LHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
              G  +H  +V +  +P V +  AL+ MY + G +  +  IF ++   K +VSWN MI 
Sbjct: 326 SLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIA-NKTLVSWNNMIA 384

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV------ 458
                   TEA+ LF  + +  + P Y T  +V+ A    G +   RQ    ++      
Sbjct: 385 AYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAE 444

Query: 459 NEYGIEPRIEHFASLVDIVGR------------------------HGRLEDAMDLIKGMP 494
           N   +   +  +A   D+V                          HG+ + A+++   M 
Sbjct: 445 NTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMK 504

Query: 495 F---EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD-VGRWD 550
           +   +P+++ + ++L AC V   V+   +    ++  +     P +  Y    D +GR  
Sbjct: 505 YNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLML--QEYGMIPQIEHYGCMTDLLGREG 562

Query: 551 DANEVRLLMKSNNIKKPTGYSW 572
           D  EV   ++S  I  PT   W
Sbjct: 563 DLREVLQFIESMPI-DPTSRVW 583



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 170/389 (43%), Gaps = 52/389 (13%)

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
           QN   A + E   R+P +  +S S +VS L   G +DEA   L         G D    +
Sbjct: 23  QNLIPATSKEPPPRLPPKRGSSKSLVVS-LAAEGRMDEAVEALAAVR-----GPDAF-LH 75

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N +I G+   G    A   +  +  +  R +   RF   +V     + C A+ G +   R
Sbjct: 76  NVMIRGFADAGLPAGALAAYRGMLEDGARPD---RFTFPVV-----VKCCARLGGLDEGR 127

Query: 223 E----IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
                + +  LE D ++ N++++ Y  +  +E+A  +F  MP  D +TWN MV GY   G
Sbjct: 128 AAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNG 187

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
              LAL  F+ M               E   D  G I       +E        FSS+  
Sbjct: 188 LGSLALACFQEMHD-----------ALEVQHDSVGIIAALAACCLE--------FSSM-- 226

Query: 339 MSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
                     G +IH  V +  +  D+ +  +L+ MY +CG +  AR +F  M  L+ VV
Sbjct: 227 ---------QGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMP-LRTVV 276

Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457
           +WN MIGG A +    EA + F  MR+  +    +T I++L+ACA       GR     +
Sbjct: 277 TWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYV 336

Query: 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
           V    + P +    +L+++ G+ G++E +
Sbjct: 337 VRRQFL-PHVVLETALLEMYGKVGKVESS 364


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 196/608 (32%), Positives = 298/608 (49%), Gaps = 67/608 (11%)

Query: 21  MPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC----VTWNTVISGYAKTGEM 76
           MP+R+VVSWN +ISGY      GF  E   LF      D      T++  +S   +T ++
Sbjct: 1   MPKRNVVSWNSLISGYTQ---MGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDL 57

Query: 77  EEALRLFNSMPARN-----VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSG 131
               RL +++   +     V+  N++I  + + G +  A   F+     DS S ++L++G
Sbjct: 58  RLG-RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAG 116

Query: 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191
            ++ G  DE  R+LVK                    G      +E  + L       C  
Sbjct: 117 YVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLH-----GCAV 171

Query: 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM-- 249
             G      ++V   +++  YAK GD+  A +IF+ M + +   +N MI+G++ +  M  
Sbjct: 172 KLG---LDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMAD 228

Query: 250 ---EEASNLFVKMP---------------------------------------HPDTLTW 267
               EA  LF +M                                          D    
Sbjct: 229 EFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIG 288

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           NA+V  Y+  G++E  L  F   P+ ++VSW S+I G   N  +EG + LF ++   G K
Sbjct: 289 NALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRK 348

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARII 386
           PD  T S +LS  + +  +  G QIH    KT I +   I N+ I MYA+CG I  A + 
Sbjct: 349 PDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMT 408

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+E K   ++VSW+ MI   A HG A EA++LF+ M+   + P +ITF+ VL AC+H GL
Sbjct: 409 FKETK-NPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGL 467

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           VEEG ++F+ M  ++GI P ++H A +VD++GR GRL +A   I    FE D  +W +LL
Sbjct: 468 VEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLL 527

Query: 507 GACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
            ACRVH   +  +  AE ++++EPE +  YVLLYN+Y D G    A E+R LMK   +KK
Sbjct: 528 SACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKK 587

Query: 567 PTGYSWVD 574
             G SW++
Sbjct: 588 EPGLSWIE 595



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 107/470 (22%), Positives = 196/470 (41%), Gaps = 79/470 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI----------------------- 37
           +I  Y K   +  AR +F+   + D VSWN +I+GY+                       
Sbjct: 82  LIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLN 141

Query: 38  --------SSRGSGF---LEEARYL----FDIMPERDCVTWNTVISGYAKTGEMEEALRL 82
                    + GS F   +E  + L      +  + D V    ++  YAK G++E+A ++
Sbjct: 142 SYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKI 201

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVAN-----AIEFFDRMPGRDSASLSALVSGLIQNGE 137
           F  MP  NVV +NAMI+GFLQ   +A+     A+  F  M  R         S +++   
Sbjct: 202 FKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACS 261

Query: 138 LDEAARVLVKCGSRCDG--------GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
             EA     +CG +            ++ +   N L+  Y   G +E+  K F   P   
Sbjct: 262 TIEA----FECGKQIHAQIFKYNLQSDEFIG--NALVELYSLSGSIEDGLKCFHSTP--- 312

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIH 245
                    K ++VSW S+I+ + + G       +F ++L    + D F+ + M+S   +
Sbjct: 313 ---------KLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACAN 363

Query: 246 VLDMEEASNLFVKMPHPD----TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
           +  ++    +            T+  N+ +  YA+ G+++ A   FK     ++VSW+ M
Sbjct: 364 LAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVM 423

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-- 359
           I+    +   + A+ LF  M+  G  P+  TF  +L   S    +  G++  +++ K   
Sbjct: 424 ISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHG 483

Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           + P+V  +  ++ +  R G + EA     +     + V W +++  C  H
Sbjct: 484 ITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVH 533


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 173/550 (31%), Positives = 285/550 (51%), Gaps = 82/550 (14%)

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS 124
            ++  Y K  E+E+A  LF+ M  R++V+W  MI G+ + G    ++  F++M  R+   
Sbjct: 70  ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM--REEGV 127

Query: 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK 184
           +             D+ A V                   T++    + G + +AR + D 
Sbjct: 128 VP------------DKVAMV-------------------TVVFACAKLGAMHKARIIDDY 156

Query: 185 IPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI 244
           I           +F+ +++   +MI  YAK G V SAREIF++M E++  SW+ MI+ Y 
Sbjct: 157 IQRK--------KFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYG 208

Query: 245 HVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLE-------------LALD-- 285
           +     +A +LF  M      PD +T  +++   + + NL+             L LD  
Sbjct: 209 YHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHF 268

Query: 286 --------------------FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
                                F +MP+++LV+W  MI G     +   ++ LF +M+ EG
Sbjct: 269 VCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEG 328

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEAR 384
             PD+    +++   + +  +H    I   + +     DV +  A+I M+A+CG +  AR
Sbjct: 329 VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAR 388

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            IF+ M+  KNV+SW+AMI     HG   +AL+LF  M    +LP  IT +S+L AC+HA
Sbjct: 389 EIFDRMEE-KNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHA 447

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           GLVEEG + F  M  +Y +   ++H+  +VD++GR GRL++A+ LI+ M  E D+ +WGA
Sbjct: 448 GLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGA 507

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
            LGACR H +V LA+ AA +L++++P+N   Y+LL N+YA+ GRW+D  + R LM    +
Sbjct: 508 FLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRL 567

Query: 565 KKPTGYSWVD 574
           KK  G++W++
Sbjct: 568 KKIPGWTWIE 577



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 214/464 (46%), Gaps = 74/464 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           ++  YVK RE+  AR LFD+M +RD+V+W VMI GY                        
Sbjct: 71  LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPD 130

Query: 37  --------ISSRGSGFLEEARYLFDIMPER----DCVTWNTVISGYAKTGEMEEALRLFN 84
                    +    G + +AR + D +  +    D +    +I  YAK G +E A  +F+
Sbjct: 131 KVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFD 190

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGL-----IQN 135
            M  +NV+SW+AMI+ +  +G    A++ F  M       D  +L++L+        +Q 
Sbjct: 191 RMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQM 250

Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           G L     ++ K G   D     V A   L+  YG+   +E+AR LFDK+P         
Sbjct: 251 GRL--IHHIVYKFGLDLD---HFVCA--ALVDMYGKCREIEDARFLFDKMP--------- 294

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEE 251
              +R++V+W  MI  YA+ G+   +  +F++M E     D  +  T++     +  M +
Sbjct: 295 ---ERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHK 351

Query: 252 ASNL--FV--KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
           A  +  ++  K    D +   AM+  +A+ G +E A + F RM +KN++SW++MIA    
Sbjct: 352 ARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 411

Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVP 365
           +     A+ LF  M   G  P++ T  S+L   S    +  G++   ++ +  +V  DV 
Sbjct: 412 HGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVK 471

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
               ++ +  R G + EA  + E M + K+   W A +G C +H
Sbjct: 472 HYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTH 515



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 141/288 (48%), Gaps = 39/288 (13%)

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           +++  L+ D F    ++  Y+   ++E+A  LF KM   D +TW  M+ GYA+ G    +
Sbjct: 56  VYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 115

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
           L  F++M +                               EG  PD+    +++   + +
Sbjct: 116 LVLFEKMRE-------------------------------EGVVPDKVAMVTVVFACAKL 144

Query: 344 VDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
             +H    I   + +     DV +  A+I MYA+CG +  AR IF+ M+  KNV+SW+AM
Sbjct: 145 GAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRME-EKNVISWSAM 203

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           I     HG   +AL+LF+ M S  +LP  IT  S+L AC+    ++ GR     +V ++G
Sbjct: 204 IAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRL-IHHIVYKFG 262

Query: 463 IEPRIEHF--ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
           ++  ++HF  A+LVD+ G+   +EDA  L   MP E D   W  ++G 
Sbjct: 263 LD--LDHFVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMIGG 307



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 134/287 (46%), Gaps = 36/287 (12%)

Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360
           M+ G     DY      F ++   G +PD +T   ++     + +L +G  IH +V K  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 361 IP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
           +  D  +  AL+ MY +C  I +AR +F++M+  +++V+W  MIGG A  G A E+L LF
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQ-ERDLVTWTVMIGGYAECGKANESLVLF 119

Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEG--------RQHFK-------SMVNEYG-- 462
           + MR   V+P  +  ++V+ ACA  G + +         R+ F+       +M++ Y   
Sbjct: 120 EKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKC 179

Query: 463 --------IEPRIEH-----FASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALL 506
                   I  R+E      +++++   G HG+   A+DL + M      PDK    +LL
Sbjct: 180 GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLL 239

Query: 507 GACRVHNNVELAQVAAEALMKVEPE-NSTPYVLLYNMYADVGRWDDA 552
            AC    N+++ ++    + K   + +      L +MY      +DA
Sbjct: 240 YACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDA 286



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 112/273 (41%), Gaps = 58/273 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
           ++  Y K RE+  AR LFD+MP+RD+V+W VMI GY      G   E+  LFD M E   
Sbjct: 273 LVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAE---CGNANESLVLFDKMREEGV 329

Query: 59  -------------------------------------DCVTWNTVISGYAKTGEMEEALR 81
                                                D +    +I  +AK G +E A  
Sbjct: 330 VPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESARE 389

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F+ M  +NV+SW+AMI+ +  +G    A++ F  M       +  +L +L+      G 
Sbjct: 390 IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGL 449

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           ++E  R             D V+ Y  ++   G+ GR++EA KL + + V  D G     
Sbjct: 450 VEEGLRFFSLMWEDYSVRAD-VKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEG----- 503

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
                  W + +       DVV A +    +LE
Sbjct: 504 ------LWGAFLGACRTHKDVVLAEKAATSLLE 530


>gi|302141863|emb|CBI19066.3| unnamed protein product [Vitis vinifera]
          Length = 521

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 180/518 (34%), Positives = 268/518 (51%), Gaps = 50/518 (9%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +++ Y     +++A RLF+    RNV +W  MIS +  +G    A++F+ +M    S 
Sbjct: 42  NNLLAMYVDISLLKDARRLFDETLERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSE 101

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           +          NG L  A  VL  CG   D           L  G    GRV  A   FD
Sbjct: 102 T---------PNGFLYSA--VLKACGLVGD-----------LESGKLIHGRVFRANLGFD 139

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
            + +N                  +++  Y K G + SAR++F+ +L   + SWNTMISGY
Sbjct: 140 TVLMN------------------TLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGY 181

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSG-------YAQIGNLELALDFFKRMPQKNLV 296
                MEEA NLF +MP PDT++WN++++G       YA  G ++ AL  F R+P+K++V
Sbjct: 182 GKEGLMEEAVNLFYQMPEPDTVSWNSIIAGFGILIDLYANDGKIKDALRLFYRLPEKDIV 241

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
            W+S+I+ C           LF  M     + D+   SS+L   S +V L  G Q+H   
Sbjct: 242 VWSSLISWCTKMGLNSLVFSLFRDMVNLDIEVDQFIISSVLKACSSLVGLGSGKQVHSFC 301

Query: 357 TKTVIPDVPIN-NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
            K+      I   +LI +YA+CG I +   +F      ++ V +  +I GC  +G A EA
Sbjct: 302 VKSGYESERITVTSLIDLYAKCGEIEDGLALFYCTSE-RDTVCYTGIIMGCGQNGRAMEA 360

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
           +  F+ M    + P  ITF+ VLSAC HAGLVEE    FK M  EY +EP IEH+  +V+
Sbjct: 361 VGFFQEMIELGLKPNEITFLGVLSACRHAGLVEEAWTIFKYMKTEYKMEPHIEHYYCIVE 420

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
           ++ + G  ++A +LI  MPFEPD+ +W +LLGAC  H   EL    AE L+   PE+ + 
Sbjct: 421 LLSQAGCFKEAEELIAEMPFEPDQTIWNSLLGACGTHKKTELVNFIAERLLTTLPEDPSI 480

Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            V L N+YA +  WDD+ ++R ++K   +K+  G SW+
Sbjct: 481 LVTLSNVYATLEMWDDSRKMREVIKKVGMKE-AGKSWI 517



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 111/486 (22%), Positives = 204/486 (41%), Gaps = 91/486 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------------RG 41
           +++ YV    +  AR+LFDE  +R+V +W  MIS Y SS                     
Sbjct: 44  LLAMYVDISLLKDARRLFDETLERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETP 103

Query: 42  SGFLEEARY------------------LFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
           +GFL  A                    +F      D V  NT++  Y K G +  A ++F
Sbjct: 104 NGFLYSAVLKACGLVGDLESGKLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVF 163

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143
           + +   +  SWN MISG+ + G +  A+  F +MP  D+ S +++++G            
Sbjct: 164 DDILCPSSTSWNTMISGYGKEGLMEEAVNLFYQMPEPDTVSWNSIIAG------------ 211

Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
                             +  LI  Y   G++++A +LF ++P            +++IV
Sbjct: 212 ------------------FGILIDLYANDGKIKDALRLFYRLP------------EKDIV 241

Query: 204 SWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDM---EEASNLF 256
            W+S+I    K G       +F  M    +E D F  ++++     ++ +   ++  +  
Sbjct: 242 VWSSLISWCTKMGLNSLVFSLFRDMVNLDIEVDQFIISSVLKACSSLVGLGSGKQVHSFC 301

Query: 257 VKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
           VK  +  + +T  +++  YA+ G +E  L  F    +++ V +  +I GC  N     A+
Sbjct: 302 VKSGYESERITVTSLIDLYAKCGEIEDGLALFYCTSERDTVCYTGIIMGCGQNGRAMEAV 361

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPDVPINNALITM 373
             F +M   G KP+  TF  +LS    +G+V+    +  +      + P +     ++ +
Sbjct: 362 GFFQEMIELGLKPNEITFLGVLSACRHAGLVEEAWTIFKYMKTEYKMEPHIEHYYCIVEL 421

Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
            ++ G   EA  +  EM    +   WN+++G C +H   TE +  F + R    LP   +
Sbjct: 422 LSQAGCFKEAEELIAEMPFEPDQTIWNSLLGACGTHK-KTELVN-FIAERLLTTLPEDPS 479

Query: 434 FISVLS 439
            +  LS
Sbjct: 480 ILVTLS 485



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 117/279 (41%), Gaps = 66/279 (23%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           D F  N +++ Y+ +  +++A  LF +    +  TW  M+S Y+  G  + AL F+ +M 
Sbjct: 37  DVFFANNLLAMYVDISLLKDARRLFDETLERNVATWTTMISAYSSSGRPDTALKFYVQM- 95

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
                                        ++ + E P+   +S++L     + DL  G  
Sbjct: 96  -----------------------------LESKSETPNGFLYSAVLKACGLVGDLESGKL 126

Query: 352 IHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           IH  V +  +  D  + N L+ MY +CG++  AR +F+++ L  +  SWN MI G    G
Sbjct: 127 IHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDI-LCPSSTSWNTMISGYGKEG 185

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
              EA+ LF  M      P  +++ S+++                              F
Sbjct: 186 LMEEAVNLFYQMPE----PDTVSWNSIIAG-----------------------------F 212

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
             L+D+    G+++DA+ L   +P E D  VW +L+  C
Sbjct: 213 GILIDLYANDGKIKDALRLFYRLP-EKDIVVWSSLISWC 250



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 34/212 (16%)

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIF 387
           D H   S++           G  +H  + K  V  DV   N L+ MY     + +AR +F
Sbjct: 2   DLHRIVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLF 61

Query: 388 EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV-LPTYITFISVLSACAHAGL 446
           +E  L +NV +W  MI   +S G    AL+ +  M   K   P    + +VL AC   G 
Sbjct: 62  DE-TLERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGD 120

Query: 447 VEEGRQ-HFKSMVNEYGIE-----------------------------PRIEHFASLVDI 476
           +E G+  H +      G +                             P    + +++  
Sbjct: 121 LESGKLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISG 180

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
            G+ G +E+A++L   MP EPD   W +++  
Sbjct: 181 YGKEGLMEEAVNLFYQMP-EPDTVSWNSIIAG 211


>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 548

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 174/523 (33%), Positives = 274/523 (52%), Gaps = 48/523 (9%)

Query: 55  MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR--NVVSWNAMISGFLQNGDVANAIE 112
           +P R  VT        A +   + A  +F+S+PA   NV  W A +S + ++   A A E
Sbjct: 38  LPARAAVTL------IASSSSPQYARAIFDSVPAASANVYLWTATVSSYAKHASPALAAE 91

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
            F          +  L SG   NG    +   ++K  S+      + + +   +V  G  
Sbjct: 92  AFPLF-------MFMLRSGPRPNGFTVSS---VLKSLSKLRAAHQVCQVHG-FLVKAGLA 140

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
             +     L D          GN              +C  K      AR +F++M   +
Sbjct: 141 SSLHVGATLLDSY--------GN--------------LCRVK-----DARRVFDEMPRSN 173

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
               N M+SGY+   D+E A  +F  M   D+++WN ++SGY + G+  LA D F  MPQ
Sbjct: 174 VVVGNAMVSGYVKAGDVEAARQVFDGMVERDSISWNTLMSGYLRRGDAGLARDLFDEMPQ 233

Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
           +N+ SWN MI+ C     +  ++ +F QM+    +PD  T + ++S  + +  L +  Q+
Sbjct: 234 RNVNSWNMMISACSEVGLWADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVARQV 293

Query: 353 HQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
           + ++ K  +  +  ++N+L+ M+A+CG   EA ++F EM   K+VVS+N M+   A HG 
Sbjct: 294 YGLLRKGCVEMNCHVHNSLVDMFAKCGCFSEAHLLFAEMDP-KDVVSYNVMVSALAHHGH 352

Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471
             +AL+LF+ M    + P  +TF+ VLSACAHAGLV+ G+ +F++M   Y IE   +H+A
Sbjct: 353 GKDALKLFEQMIEGGLQPDAVTFLGVLSACAHAGLVDSGKYYFETMGTTYAIEKSADHYA 412

Query: 472 SLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531
            +VD+ GR G +E+A   +K MP +P   +WGALL ACR H N+++ +VAA  L+++EP 
Sbjct: 413 CMVDLYGRVGLIEEAHYFVKIMPVKPHAGIWGALLNACRKHCNIDVGEVAARELIRIEPM 472

Query: 532 NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           N   YVLL N  A   +WD   +VR LM+ N I K TG+SWV+
Sbjct: 473 NPGNYVLLSNTLAWSQQWDAVGDVRQLMRGNGIDKNTGFSWVE 515



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 160/322 (49%), Gaps = 31/322 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y     +  AR++FDEMP+ +VV  N M+SGY+ +   G +E AR +FD M ERD 
Sbjct: 149 LLDSYGNLCRVKDARRVFDEMPRSNVVVGNAMVSGYVKA---GDVEAARQVFDGMVERDS 205

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP-- 118
           ++WNT++SGY + G+   A  LF+ MP RNV SWN MIS   + G  A+++  F++M   
Sbjct: 206 ISWNTLMSGYLRRGDAGLARDLFDEMPQRNVNSWNMMISACSEVGLWADSVAVFNQMRFM 265

Query: 119 --GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
               D+A+++ L+S   Q G L  A +V       C   E     +N+L+  + + G   
Sbjct: 266 SFRPDAATMAVLMSACAQLGFLSVARQVYGLLRKGCV--EMNCHVHNSLVDMFAKCGCFS 323

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RD 232
           EA  LF ++              +++VS+N M+   A  G    A ++FEQM+E     D
Sbjct: 324 EAHLLFAEMD------------PKDVVSYNVMVSALAHHGHGKDALKLFEQMIEGGLQPD 371

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA-----MVSGYAQIGNLELALDFF 287
             ++  ++S   H   ++     F  M     +  +A     MV  Y ++G +E A  F 
Sbjct: 372 AVTFLGVLSACAHAGLVDSGKYYFETMGTTYAIEKSADHYACMVDLYGRVGLIEEAHYFV 431

Query: 288 KRMPQKNLVS-WNSMIAGCETN 308
           K MP K     W +++  C  +
Sbjct: 432 KIMPVKPHAGIWGALLNACRKH 453


>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Vitis vinifera]
          Length = 742

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 200/623 (32%), Positives = 305/623 (48%), Gaps = 72/623 (11%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS----SRGSGFLEEARYLFDIMPERDC 60
           Y+K   +  A  +FD M  RD VSWN+MI G++S     +G  +  +AR    I  E + 
Sbjct: 94  YMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARV---IAFEPNV 150

Query: 61  VTWNTVISGYAKTGEMEEALRL--------FNSMPARNVVSWNAMISGFLQNGDVANAIE 112
            T    I      G MEE L++        F  +P+      N+++S +  N D+  A E
Sbjct: 151 STLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQ----NSLLSMYADN-DMERAEE 205

Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
            FD M  RD  S S ++ G +Q GE   A ++ ++  S      D +   + L       
Sbjct: 206 LFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVL-KACANT 264

Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
           G +   R +   +     RG        ++   NS+I  Y+K  D  SA + F +M  R+
Sbjct: 265 GDISMGRSVHGVVIC---RG-----LDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRN 316

Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMP------------------------------HP 262
           T SWN++ISG +      EA +LF  M                               H 
Sbjct: 317 TVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHS 376

Query: 263 DTLTW---------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313
             + W         N+++  Y++   +ELA   F R+  K+ VSW++MIAG       + 
Sbjct: 377 IVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDE 436

Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALIT 372
           AI LF +M    EKP+  T  S+L   S   DL      H + + + +  +V +  A++ 
Sbjct: 437 AIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILD 496

Query: 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432
           MYA+CG I  +R  F+++   KN+VSW AMI  C  +G A +AL L   M+   + P  +
Sbjct: 497 MYAKCGEIGLSRKAFDQIPE-KNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVV 555

Query: 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492
           T +SVLSAC+H GLVEEG   F++MV ++G+EP +EH++ +VD++ R G+L  AM+LI+ 
Sbjct: 556 TTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEK 615

Query: 493 MP--FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550
           MP        +WGALL ACR   N  L   AA  ++++EP++S  Y L  +MYA  G W 
Sbjct: 616 MPERMRDGAGLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWA 675

Query: 551 DANEVRLLMKSNNIKKPTGYSWV 573
           DA  +R L+K+  ++   GYS V
Sbjct: 676 DAARMRWLVKARGVRVVAGYSLV 698


>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
 gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
          Length = 590

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 159/423 (37%), Positives = 246/423 (58%), Gaps = 15/423 (3%)

Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
           G DL    N LI  Y +       RK+FD+         G V   R++VSWNSM+  Y  
Sbjct: 145 GADLF-TVNALISFYCRILDCISGRKVFDE--------AGGV--SRDLVSWNSMVAGYVG 193

Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHV--LDMEEASNLFVKMPHPDTLTWNAMVS 272
            G++  A+E+F++M +RD FSW  +I GY       ++ A  LF +M   D + WN+M+ 
Sbjct: 194 CGEMGLAQELFDEMPQRDAFSWGALIDGYGKQGGAGVDRARELFDQMTERDLVCWNSMID 253

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
           GYA+ G ++ A   F+ MP++N++SW+ +I G     + + A++ F  M   G +PDR  
Sbjct: 254 GYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDRVA 313

Query: 333 FSSILSMSSGIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
               +S  + +  L  G  +H  +  K V+ DV +  ALI MY +CG +  A +IFE M 
Sbjct: 314 AVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMP 373

Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
             ++VV+WN MI G  +HG+  +A+ LF  M + +V    ++ +++L+AC HAGLV EG 
Sbjct: 374 E-RSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEGL 432

Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
           + F  M  ++GI+P++EH+ +LVD++GR GRL+ A   I+ MP EP   +WG+LL ACR 
Sbjct: 433 EIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRS 492

Query: 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           H+ VELA+++ E L  +  ++S  YVLL N+YAD G W D   +R LM    ++K  G S
Sbjct: 493 HSCVELAELSVERLANLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRS 552

Query: 572 WVD 574
            ++
Sbjct: 553 VIE 555



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 112/328 (34%), Positives = 163/328 (49%), Gaps = 33/328 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           M++GYV   EM  A++LFDEMPQRD  SW  +I GY    G+G ++ AR LFD M ERD 
Sbjct: 187 MVAGYVGCGEMGLAQELFDEMPQRDAFSWGALIDGYGKQGGAG-VDRARELFDQMTERDL 245

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--- 117
           V WN++I GYA+ G M+EA  LF  MP RNV+SW+ +I G ++ G+   A+E F  M   
Sbjct: 246 VCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRC 305

Query: 118 ---PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
              P R +A     VS   Q G L E  R L     +     D+V     LI  Y + GR
Sbjct: 306 GIRPDRVAA--VGAVSACAQLGAL-EQGRWLHSYLEKKKVLSDVV-VQTALIDMYMKCGR 361

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LER-- 231
           ++ A  +F+ +P            +R++V+WN MI+     G  + A  +F +M  ER  
Sbjct: 362 MDLAMLIFESMP------------ERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVA 409

Query: 232 -DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALD 285
            D  S   M++   H   + E   +F +M       P    + A+V    + G L+ A  
Sbjct: 410 VDDLSLLAMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARH 469

Query: 286 FFKRMPQKNLVS-WNSMIAGCETNKDYE 312
             + MP +     W S++A C ++   E
Sbjct: 470 AIETMPMEPTPELWGSLLAACRSHSCVE 497



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 183/365 (50%), Gaps = 32/365 (8%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMP--ARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           D  T N +IS Y +  +     ++F+     +R++VSWN+M++G++  G++  A E FD 
Sbjct: 147 DLFTVNALISFYCRILDCISGRKVFDEAGGVSRDLVSWNSMVAGYVGCGEMGLAQELFDE 206

Query: 117 MPGRDSASLSALVSGLIQNG--ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
           MP RD+ S  AL+ G  + G   +D A  +  +   R     DLV  +N++I GY + GR
Sbjct: 207 MPQRDAFSWGALIDGYGKQGGAGVDRARELFDQMTER-----DLV-CWNSMIDGYARHGR 260

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----E 230
           ++EAR LF+++P            +RN++SW+ +I  + + G+   A E F+ ML     
Sbjct: 261 MDEARSLFEEMP------------ERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIR 308

Query: 231 RDTFSWNTMISGYIHVLDMEEA----SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286
            D  +    +S    +  +E+     S L  K    D +   A++  Y + G ++LA+  
Sbjct: 309 PDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLI 368

Query: 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDL 346
           F+ MP++++V+WN MI G  T+     A+ LF +M+ E    D  +  ++L+  +    +
Sbjct: 369 FESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLV 428

Query: 347 HLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
             G++I   + K   + P V    AL+ +  R G + +AR   E M +      W +++ 
Sbjct: 429 SEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLA 488

Query: 405 GCASH 409
            C SH
Sbjct: 489 ACRSH 493



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 152/304 (50%), Gaps = 29/304 (9%)

Query: 1   MISGYVKRREMAKARKLFDEMP--QRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
           +IS Y +  +    RK+FDE     RD+VSWN M++GY+   G G +  A+ LFD MP+R
Sbjct: 154 LISFYCRILDCISGRKVFDEAGGVSRDLVSWNSMVAGYV---GCGEMGLAQELFDEMPQR 210

Query: 59  DCVTWNTVISGYAKTG--EMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           D  +W  +I GY K G   ++ A  LF+ M  R++V WN+MI G+ ++G +  A   F+ 
Sbjct: 211 DAFSWGALIDGYGKQGGAGVDRARELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFEE 270

Query: 117 MPGRDSASLSALVSGLIQNGELDEAA---RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           MP R+  S S ++ G ++ GE  EA    + +++CG R     D V A    +    Q G
Sbjct: 271 MPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIR----PDRVAAVGA-VSACAQLG 325

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
            +E+ R L   +           +   ++V   ++I  Y K G +  A  IFE M ER  
Sbjct: 326 ALEQGRWLHSYLE--------KKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPERSV 377

Query: 234 FSWNTMISGY-IHVLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFK 288
            +WN MI G   H   + +A  LF +M       D L+  AM++     G +   L+ F 
Sbjct: 378 VTWNVMIVGLGTHGYGL-DAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEGLEIFH 436

Query: 289 RMPQ 292
           RM +
Sbjct: 437 RMKK 440



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 13/222 (5%)

Query: 278 GNLELALDFFKRMPQ---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
           G   LA   F R+P+   ++   WN+ I      +    A+  F +M+  G +PD +TF 
Sbjct: 59  GAAPLADAVFARLPEPAARDPFPWNTAIRLHAPGRP-RAALLYFARMRSCGVRPDAYTFP 117

Query: 335 SILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM-KL 392
           ++L           G+ +H + V + +  D+   NALI+ Y R    +  R +F+E   +
Sbjct: 118 AVLKACGCAPGCRAGLLVHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGV 177

Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
            +++VSWN+M+ G    G    A ELF  M       ++   I        AG V+  R+
Sbjct: 178 SRDLVSWNSMVAGYVGCGEMGLAQELFDEMPQRDAF-SWGALIDGYGKQGGAG-VDRARE 235

Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
            F  M      E  +  + S++D   RHGR+++A  L + MP
Sbjct: 236 LFDQMT-----ERDLVCWNSMIDGYARHGRMDEARSLFEEMP 272


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 189/649 (29%), Positives = 314/649 (48%), Gaps = 99/649 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG------------------- 41
           +++ Y +      AR+L DEMP+R+ VS+N++I  Y S  G                   
Sbjct: 49  LLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAY-SREGLAPLSLETLARARRAGVDV 107

Query: 42  --------------SGFLEEAR-----YLFDIMPERDCVTWNTVISGYAKTGEMEEALRL 82
                         +G L   R      + D +     V+ N+++S Y+K GEM EA R+
Sbjct: 108 DRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVS-NSLVSMYSKCGEMGEARRV 166

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAA 142
           F+    R+ VSWN+++SG+++ G     +  F  M  R    L++   G           
Sbjct: 167 FDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMR-RGGMGLNSFALG----------- 214

Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVG----------------YGQRGRVEEARKLFDKIP 186
            V+  C  R DG  D+  A +  ++                 Y ++G + EA  LF  + 
Sbjct: 215 SVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQ 274

Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR----------EIFEQMLERDTFSW 236
                       + N+V +N+MI  + +   V+             E+  + ++   F++
Sbjct: 275 ------------EPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTF 322

Query: 237 NTM-----ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           +++     ++GY+     +    +       D    +A++  Y   G +E     F+  P
Sbjct: 323 SSVLRACNLAGYLE-FGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSP 381

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
           + ++V+W +M++GC  N+ +E A+ LF +    G KPD  T SS+++  + +     G Q
Sbjct: 382 KHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQ 441

Query: 352 IHQMVTKTVIPDVPI-NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           I    TK+      +  N+ + MYAR G +  A   F+EM+   +VVSW+A+I   A HG
Sbjct: 442 IQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEME-SHDVVSWSAVISCHAQHG 500

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
            A +AL  F  M   KV+P  ITF+ VL+AC+H GLV+EG +++++M  +YG+ P I+H 
Sbjct: 501 CARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHC 560

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
             +VD++GR GRL DA   I    F  D  +W +LL +CR+H ++E  Q+ A  +M++EP
Sbjct: 561 TCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEP 620

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFSPCG 579
            +S  YV+LYNMY D G    A++ R LMK   +KK  G SW++   CG
Sbjct: 621 TSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIEL-KCG 668



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 128/470 (27%), Positives = 203/470 (43%), Gaps = 50/470 (10%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRD 121
           NT+++ Y + G    A RL + MP RN VS+N +I  + + G    ++E   R    G D
Sbjct: 47  NTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVD 106

Query: 122 SASLSALV-------SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
               S          +G ++ G    A  +L       DG    V   N+L+  Y + G 
Sbjct: 107 VDRFSYAAALAACSRAGHLRAGRAVHALAIL-------DGLSSGVFVSNSLVSMYSKCGE 159

Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
           + EAR++FD            V  +R+ VSWNS++  Y +AG       +F  M+ R   
Sbjct: 160 MGEARRVFD------------VAEERDDVSWNSLVSGYVRAGAREEMVRVF-AMMRRGGM 206

Query: 235 SWNTMISGYI---------HVLDMEEASNLFVKMP--HPDTLTWNAMVSGYAQIGNLELA 283
             N+   G +           +D+ EA +  V       D    +AM+  YA+ G L  A
Sbjct: 207 GLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEA 266

Query: 284 LDFFKRMPQKNLVSWNSMIAG-CET-----NKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
              F+ + + N+V +N+MIAG C T      +    A+ L+ ++Q  G +P   TFSS+L
Sbjct: 267 AALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVL 326

Query: 338 SMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
              +    L  G QIH Q++  T   D  I +ALI +Y   G + +    F       ++
Sbjct: 327 RACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSP-KHDI 385

Query: 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456
           V+W AM+ GC  +    +AL LF       + P   T  SV++ACA   +   G Q  + 
Sbjct: 386 VTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQ-IQC 444

Query: 457 MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
              + G +       S V +  R G ++ A    + M    D   W A++
Sbjct: 445 FATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEME-SHDVVSWSAVI 493



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 134/298 (44%), Gaps = 43/298 (14%)

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293
           F  NT+++ Y  +     A  L  +MP  + +++N ++  Y++ G   L+L+   R  + 
Sbjct: 44  FLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRA 103

Query: 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353
                                          G   DR ++++ L+  S    L  G  +H
Sbjct: 104 -------------------------------GVDVDRFSYAAALAACSRAGHLRAGRAVH 132

Query: 354 QM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFA 412
            + +   +   V ++N+L++MY++CG + EAR +F+  +  ++ VSWN+++ G    G  
Sbjct: 133 ALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAE-ERDDVSWNSLVSGYVRAGAR 191

Query: 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN----EYGIEPRIE 468
            E + +F  MR   +        SV+  C+  G   +G       V+    + G++  + 
Sbjct: 192 EEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRG---DGTMDIAEAVHGCVIKAGLDSDVF 248

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL-GACRVHNNVELAQVAAEAL 525
             ++++D+  + G L +A  L + +  EP+  ++  ++ G CR    +   +VA+EAL
Sbjct: 249 LVSAMIDMYAKKGALVEAAALFRSVQ-EPNVVMFNTMIAGFCRTETVIG-KEVASEAL 304


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 157/420 (37%), Positives = 232/420 (55%), Gaps = 16/420 (3%)

Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVN-CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220
           YN LI  Y   G   +   L+ ++ +  C   E +  F         +    A       
Sbjct: 50  YNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTF---------LFSACASLSSHQQ 100

Query: 221 AREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQ 276
            R +    ++     D F+   ++  Y  +  +  A   F +M   D  TWN+M++GYA+
Sbjct: 101 GRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYAR 160

Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSS 335
            G+LE AL+ F+ MP +N+ SW +MI+G   N  Y  A+ +F+ M+ E E +P+  T +S
Sbjct: 161 CGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLAS 220

Query: 336 ILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
           +L   + +  L +G +I           ++ ++NAL+ MYARCG I +A  +FEE+   +
Sbjct: 221 VLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRR 280

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           N+ SWN+MI G A HG   EA+ELF  M      P  +TF+ VL AC H G+V EG+  F
Sbjct: 281 NLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFF 340

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
           +SM  ++ I P++EH+  +VD++GR G L +A DLI  MP EPD  VWG LLGAC  H +
Sbjct: 341 ESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHGH 400

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           VELA+ AA AL ++EP N   YV+L N+YA  GRWD    +R LMK   I K  GYS+++
Sbjct: 401 VELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSFIE 460



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 147/307 (47%), Gaps = 31/307 (10%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           DV +   ++  Y      G L  AR  FD M  RD  TWN++I+GYA+ G++E AL LF 
Sbjct: 116 DVFALTALVDMYAKL---GLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFR 172

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-----DSASLSALVSGLIQNGELD 139
            MPARNV SW AMISG+ QNG  A A+  F  M        +  +L++++      G L+
Sbjct: 173 LMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALE 232

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
              R+ V   +R +G    +   N L+  Y + GR+++A  +F++I       +G    +
Sbjct: 233 VGERIEVY--ARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEI-------DG----R 279

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNL 255
           RN+ SWNSMIM  A  G    A E+F +ML      D  ++  ++    H   + E  + 
Sbjct: 280 RNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHF 339

Query: 256 FVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNK 309
           F  M       P    +  MV    + G L  A D   RMP + + V W +++  C  + 
Sbjct: 340 FESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHG 399

Query: 310 DYEGAIK 316
             E A K
Sbjct: 400 HVELAEK 406



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 150/300 (50%), Gaps = 35/300 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K   ++ ARK FDEM  RDV +WN MI+GY      G LE A  LF +MP R+ 
Sbjct: 123 LVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYAR---CGDLEGALELFRLMPARNV 179

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNG--DVANAIEF 113
            +W  +ISGYA+ G+  +AL +F  M        N V+  +++      G  +V   IE 
Sbjct: 180 TSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEV 239

Query: 114 FDRMPG--RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
           + R  G  ++    +AL+    + G +D+A  V        DG  +L  ++N++I+G   
Sbjct: 240 YARGNGYFKNLYVSNALLEMYARCGRIDKAWGVF----EEIDGRRNLC-SWNSMIMGLAV 294

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            GR +EA +LF K+       EG      + V++  +++     G VV  +  FE M ER
Sbjct: 295 HGRCDEAIELFYKM-----LREGAA---PDDVTFVGVLLACTHGGMVVEGQHFFESM-ER 345

Query: 232 DTFSWNTMISGYIHVLD-------MEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELA 283
           D FS    +  Y  ++D       + EA +L ++MP  PD++ W  ++   +  G++ELA
Sbjct: 346 D-FSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHGHVELA 404



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 7/184 (3%)

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
            V  +N +I   +SHG   +   L+  M      P   +F  + SACA     ++GR   
Sbjct: 46  TVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLH 105

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
              V   G    +    +LVD+  + G L  A      M    D   W +++       +
Sbjct: 106 THFVKS-GFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVR-DVPTWNSMIAGYARCGD 163

Query: 515 VELAQVAAEALMKVEP-ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +E     A  L ++ P  N T +  + + YA  G++  A  + L+M+     +P   +  
Sbjct: 164 LE----GALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLA 219

Query: 574 DFSP 577
              P
Sbjct: 220 SVLP 223


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 189/632 (29%), Positives = 313/632 (49%), Gaps = 90/632 (14%)

Query: 5   YVKRREMAKARKLFDEMPQ-RDVVSWNVMISGYISS------------------------ 39
           Y+K  ++  AR++FDEMPQ  DV  W  ++SGY  +                        
Sbjct: 139 YLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYT 198

Query: 40  --------RGSGFLEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEALRLFNSMP 87
                    G G +E+   +  ++ +      C   N +++ YAK+   ++A+ +F+ MP
Sbjct: 199 ISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMP 258

Query: 88  ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAA--RVL 145
            R+V+SWN+MISG   NG    AIE F RM               ++  ELD A    VL
Sbjct: 259 HRDVISWNSMISGCTSNGLYDKAIELFVRM--------------WLEGEELDSATLLSVL 304

Query: 146 VKCGSRCDGGEDLVRAYNTLIVGYGQR----GRVEEARKLFDKIPVNCDRGEGNVRFK-- 199
             C       E  +     ++ GY  +     +   A  L D      D    N  F+  
Sbjct: 305 PAC------AELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNM 358

Query: 200 --RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
             +N+VSW +MI  Y +AG       +F++M    T      I+  +H      A N  +
Sbjct: 359 VQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAF----AGNELL 414

Query: 258 KMPHPDTL--------------TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
           K  H  ++                NA++  Y + GN+E A   F  +  K+++SWN++I 
Sbjct: 415 K--HGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIG 472

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIP 362
           G   N     A  LF +M ++  +P+  T + IL  ++ +  L  G ++H   + +  + 
Sbjct: 473 GYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLE 531

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
           D  + NALI MY +CGA++ AR +F+ +   KN++SW  M+ G   HG   +A+ LF+ M
Sbjct: 532 DDFVANALIDMYVKCGALLLARRLFDRLS-NKNLISWTIMVAGYGMHGRGRDAIALFEQM 590

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
           R   + P   +F ++L AC+H+GL +EG + F +M  E+ IEPR++H+  +VD++   G 
Sbjct: 591 RVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGN 650

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           L++A + I  MP EPD ++W +LL  CR+H NV+LA+  AE + ++EPEN+  YVLL N+
Sbjct: 651 LKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANI 710

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           YA+  RW+   +++  +    +++ TG SW++
Sbjct: 711 YAEAERWEAVRKLKNKIGGRGLRENTGCSWIE 742



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 137/505 (27%), Positives = 229/505 (45%), Gaps = 77/505 (15%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMP-ARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
           D V    ++  Y K G++E A R+F+ MP   +V  W A++SG+ + GD+   +  F +M
Sbjct: 128 DNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKM 187

Query: 118 PG----RDSASLSALVS-----GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
                  D+ ++S ++      G I++GE+       +  GS+C  G       N L+  
Sbjct: 188 HCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVG-------NALMAF 240

Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
           Y +  R ++A  +FD +P             R+++SWNSMI      G    A E+F +M
Sbjct: 241 YAKSNRTKDAILVFDGMP------------HRDVISWNSMISGCTSNGLYDKAIELFVRM 288

Query: 229 -LERDTFSWNTMIS-----GYIHVLDMEEASNLF-VKMPH-PDTLTWNAMVSGYAQIGNL 280
            LE +     T++S       +H+L +    + + VK      T   N ++  Y+   + 
Sbjct: 289 WLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDW 348

Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
                 F+ M QKN+VSW +MI        Y+    LF +M +EG +PD    +S L   
Sbjct: 349 RSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAF 408

Query: 341 SGIVDLHLGMQIHQMVTKTVIPDV-PINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
           +G   L  G  +H    +  +  V  + NAL+ MY +CG + EA++IF+ + + K+++SW
Sbjct: 409 AGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGV-VSKDMISW 467

Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMV 458
           N +IGG + +  A EA  LF  M   ++ P  +T   +L A A    +E GR+ H  ++ 
Sbjct: 468 NTLIGGYSRNNLANEAFSLFTEML-LQLRPNAVTMTCILPAAASLSSLERGREMHAYALR 526

Query: 459 NEYGIEPRIEHFASLVDI-------------------------------VGRHGRLEDAM 487
             Y  +  + +  +L+D+                                G HGR  DA+
Sbjct: 527 RGYLEDDFVAN--ALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAI 584

Query: 488 DLIKGM---PFEPDKAVWGALLGAC 509
            L + M      PD A + A+L AC
Sbjct: 585 ALFEQMRVSGIAPDAASFSAILYAC 609



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/375 (28%), Positives = 170/375 (45%), Gaps = 47/375 (12%)

Query: 208 MIMCYAKAGDVVSAREIFEQMLE-RDTFSWNTMISGYIHVLDMEEASNLFVKMP----HP 262
           +++ Y K GD+ +AR +F++M +  D   W  ++SGY    D+ E   LF KM      P
Sbjct: 135 LVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRP 194

Query: 263 DTLT-----------------------------------WNAMVSGYAQIGNLELALDFF 287
           D  T                                    NA+++ YA+    + A+  F
Sbjct: 195 DAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVF 254

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
             MP ++++SWNSMI+GC +N  Y+ AI+LF++M +EGE+ D  T  S+L   + +  L 
Sbjct: 255 DGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLF 314

Query: 348 LGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
           LG  +H    KT  I    + N L+ MY+ C        IF  M + KNVVSW AMI   
Sbjct: 315 LGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNM-VQKNVVSWTAMITSY 373

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEP 465
              G   +   LF+ M      P      S L A A   L++ G+  H  ++ N  G+E 
Sbjct: 374 TRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRN--GMEK 431

Query: 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV-ELAQVAAEA 524
            +    +L+++  + G +E+A  +  G+    D   W  L+G    +N   E   +  E 
Sbjct: 432 VLAVTNALMEMYVKCGNMEEAKLIFDGV-VSKDMISWNTLIGGYSRNNLANEAFSLFTEM 490

Query: 525 LMKVEPENSTPYVLL 539
           L+++ P   T   +L
Sbjct: 491 LLQLRPNAVTMTCIL 505



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 6/185 (3%)

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP----DVPINNALITMYARCGAIVEAR 384
           D  ++ ++L + S +  L  G + H +V  + +     D  +   L+ MY +CG +  AR
Sbjct: 90  DDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENAR 149

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            +F+EM  + +V  W A++ G A  G   E + LF+ M    V P   T   VL   A  
Sbjct: 150 RVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGL 209

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           G +E+G +    ++ + G   +     +L+    +  R +DA+ +  GMP   D   W +
Sbjct: 210 GSIEDG-EVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHR-DVISWNS 267

Query: 505 LLGAC 509
           ++  C
Sbjct: 268 MISGC 272


>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
          Length = 601

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 288/546 (52%), Gaps = 38/546 (6%)

Query: 48  ARYLFDIMPERD---CVTWNTVISGYAKTGEMEEAL----RLFNSMPARNV--VSWNAMI 98
           AR+LFD +P      C  + +V+S  +   E+ EA+    R   ++P+  +  V  +  +
Sbjct: 31  ARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCAL 90

Query: 99  SGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
           S     G   +       M G D    +ALV    +NG +D A     +   +     D 
Sbjct: 91  SAASCQGTQTHCHALVRGMLG-DVFVQTALVDFYAKNGNMDSAVMAFEEMPIK-----DP 144

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           +   N LI+GY + G VEEAR+LFD +P            ++   SWNSMI CYA  G+ 
Sbjct: 145 I-PMNCLIIGYSRSGDVEEARRLFDSMP------------RKTSASWNSMIACYAHGGEF 191

Query: 219 VSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPHPD---TLTWNAMV 271
             A  +F+QML      +  +  T+ S      D+E        +   D    +   A++
Sbjct: 192 QEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALM 251

Query: 272 SGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
             Y +   ++ A   F RMP++++V+W++MIAG   N     +++LF +M+    KP+  
Sbjct: 252 EMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEV 311

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEM 390
           T   +LS  + +    LG QI   +    +P    + +ALI MY +CG +  AR +F  M
Sbjct: 312 TLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRM 371

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
           +  K V++WN+MI G A +GFA +A+ L+  M    V P  ITF+++L+AC HAGLV++G
Sbjct: 372 EQ-KVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKG 430

Query: 451 RQHFKSMV-NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
              F+ M  N+    P++EH A +VD++ + GRL +A   I  M  EP+  +W  LL AC
Sbjct: 431 MAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSAC 490

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
           R H +VELA++AA  L+ +EP +S+ YVLL N+YAD G W D  E+R LM+S N++K + 
Sbjct: 491 RAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSA 550

Query: 570 YSWVDF 575
           YSW++ 
Sbjct: 551 YSWIEL 556



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 189/388 (48%), Gaps = 38/388 (9%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G ++ A   F+ MP +D +  N +I GY+++G++EEA RLF+SMP +   SWN+MI+ +
Sbjct: 126 NGNMDSAVMAFEEMPIKDPIPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACY 185

Query: 102 LQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGED 157
              G+   A+  FD+M       ++ +++ + S   + G+L+   R            ED
Sbjct: 186 AHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSE-----ED 240

Query: 158 L--VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
           L  V  +  L+  Y +   ++EAR+ FD++P            +R++V+W++MI  Y+  
Sbjct: 241 LQNVIVHTALMEMYVKCRAIDEARREFDRMP------------RRDVVAWSTMIAGYSHN 288

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHV---LDMEEASNLFVKMPHPDTLTW----- 267
           G    + E+FE+M   +       + G +     L  +E            TL       
Sbjct: 289 GRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLG 348

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           +A++  Y + G++  A D F RM QK +++WNSMI G   N   E AI L+ +M  +G +
Sbjct: 349 SALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQ 408

Query: 328 PDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKT---VIPDVPINNALITMYARCGAIVE 382
           P+  TF ++L+  +  G+VD   GM   Q + K      P V     ++ +  + G + E
Sbjct: 409 PNEITFLALLTACTHAGLVD--KGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWE 466

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           A     +M++  N V W  ++  C +H 
Sbjct: 467 AYKFICDMEVEPNAVIWTTLLSACRAHA 494



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 185/395 (46%), Gaps = 60/395 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K   M  A   F+EMP +D +  N +I GY  SR SG +EEAR LFD MP +  
Sbjct: 119 LVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLIIGY--SR-SGDVEEARRLFDSMPRKTS 175

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM----PARNVVSWNAMISGFLQNGDVANAIEFFDR 116
            +WN++I+ YA  GE +EAL LF+ M     + N ++   + S   + GD+         
Sbjct: 176 ASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAW 235

Query: 117 MPGRDSASL---SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           +   D  ++   +AL+   ++   +DEA R   +   R     D+V A++T+I GY   G
Sbjct: 236 VSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRMPRR-----DVV-AWSTMIAGYSHNG 289

Query: 174 RVEEARKLFDKI-PVNCDRGE-------------GNVRFKRNIVSW-------------N 206
           R  E+ +LF+++   NC   E             G+      I S+             +
Sbjct: 290 RPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGS 349

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHP 262
           ++I  Y K G V  AR++F +M ++   +WN+MI G       E+A  L+ +M      P
Sbjct: 350 ALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQP 409

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG--------CETNKDYEGA 314
           + +T+ A+++     G ++  + FF+ M +KN    +  +          C++ + +E A
Sbjct: 410 NEITFLALLTACTHAGLVDKGMAFFQEM-KKNKQHASPQVEHCACIVDLLCKSGRLWE-A 467

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
            K    M+VE   P+   ++++LS      D+ L 
Sbjct: 468 YKFICDMEVE---PNAVIWTTLLSACRAHADVELA 499


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 196/685 (28%), Positives = 333/685 (48%), Gaps = 132/685 (19%)

Query: 8   RREMAKARKLFDEMPQRDV--VSWNVMISGYISSRGSGFLEEAR----YLFDIMPERDCV 61
            RE  KA  +F +     +  V++  +I+   S R    LE  R    ++     + D +
Sbjct: 78  HREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRS---LEHGRKIHRHMLTCNYQPDMI 134

Query: 62  TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--- 118
             N ++S Y K G ++EA  +F+SMP +NVVSW +MISG+ + G+  NAI  + +M    
Sbjct: 135 LQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSG 194

Query: 119 ------------------------------------GRDSASLSALVSGLIQNGELDEA- 141
                                               G D  + +AL+S   +  ++ +A 
Sbjct: 195 HIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAI 254

Query: 142 ---ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA----RKLFDK---------- 184
              +R+++K         DL+ ++ ++I G+ Q G   EA    R++  +          
Sbjct: 255 NVFSRIIIK---------DLI-SWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVF 304

Query: 185 ----------IPVNCDRGEGNVRFK----RNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230
                     +  +C R    +  K     ++ +  S+   YAK G + SAR +F  + +
Sbjct: 305 GSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEK 364

Query: 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT-------------------- 266
            D  +WN +I+G+  V + +E+S+ F +M H    P+ +T                    
Sbjct: 365 PDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQV 424

Query: 267 ---------------WNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKD 310
                           N+++S Y++  NL  AL  F+ +  K ++VSWN+++  C     
Sbjct: 425 HSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQ 484

Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNA 369
               ++L   M     KPD  T +++L  S  I    +G QIH  + K+ +  D+ ++NA
Sbjct: 485 AGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNA 544

Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
           LI MY +CG++  AR +F+ +    +++SW+++I G A  G   EA ELF++MR   V P
Sbjct: 545 LINMYTKCGSLECARKMFDSIGN-PDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKP 603

Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
             ITF+ +L+AC+H G+VEEG + +++M  +Y I P  EH + +VD++ R G L+ A D 
Sbjct: 604 NEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDF 663

Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
           I+ MPF PD  VW  LL AC+VH N+E+ + AAE ++K++P NS   V+L N++A  G W
Sbjct: 664 IRQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHW 723

Query: 550 DDANEVRLLMKSNNIKKPTGYSWVD 574
            D   +R  M+  ++ K  G SW++
Sbjct: 724 KDFARLRSSMRRMDVGKVPGQSWIE 748


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 146/379 (38%), Positives = 226/379 (59%), Gaps = 33/379 (8%)

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK 258
           K NI   N++I  Y K   ++ A ++F+ M+ER                           
Sbjct: 151 KSNITMENALIDMYTKCASLLDAHKVFDGMVER--------------------------- 183

Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
               D ++WN+++SG+  +G +  A   F  MP + +VSW +MI+G      Y  A+ +F
Sbjct: 184 ----DAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVF 239

Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARC 377
            QMQ+ G +PD  +  S+L   + +  L +G  IH    +  ++    I NAL+ MY++C
Sbjct: 240 RQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKC 299

Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
           G I +A  +F++M    +V+SW+ MIGG A+HG A EA+ELFK M+  K+ P  ITF+ +
Sbjct: 300 GCIGQAYQLFDQMSK-GDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGL 358

Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
           LSACAHAG   EG  +F SM  +Y IEP +EH+  LVDI+GR GRL  A+D+I+ MP +P
Sbjct: 359 LSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKP 418

Query: 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
           D  +WG+LL +CR H+N+++A +A E L ++EP+++  YVLL N+YAD+ +WD  + +R 
Sbjct: 419 DSKIWGSLLSSCRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRK 478

Query: 558 LMKSNNIKKPTGYSWVDFS 576
           L+KS ++KK  G S +D +
Sbjct: 479 LIKSKSMKKTPGSSLIDIN 497



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 156/323 (48%), Gaps = 35/323 (10%)

Query: 22  PQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALR 81
           P+ ++   N +I  Y        L +A  +FD M ERD ++WN++ISG+   G+M +A  
Sbjct: 150 PKSNITMENALIDMYTKCAS---LLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGA 206

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGE 137
           LF+ MP R +VSW AMISG+ + G  A+A+  F +M       D  S+ +++    Q G 
Sbjct: 207 LFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGA 266

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           L+    + + C    +G        N L+  Y + G + +A +LFD++            
Sbjct: 267 LEVGKWIHMYCDR--NGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMS----------- 313

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
            K +++SW++MI   A  G    A E+F++M    +E +  ++  ++S   H     E  
Sbjct: 314 -KGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGL 372

Query: 254 NLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCET 307
             F  M       P+   +  +V    + G L  ALD  ++MP K +   W S+++ C T
Sbjct: 373 AYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRT 432

Query: 308 NKDYEGAIKLFIQMQ-VEGEKPD 329
           + + + AI   I M+ +E  +PD
Sbjct: 433 HSNLDIAI---IAMEHLEELEPD 452



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 159/375 (42%), Gaps = 68/375 (18%)

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEE----ASNLFVKMPHPDTLTWNAMVS 272
           ++V  + I   +++      + +++  + V D  E    AS LF ++  P+   +NAM+ 
Sbjct: 26  NIVELKSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIR 85

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
            +       LA+ F+K M +                KD E    +F         PDR T
Sbjct: 86  AHTHNKVYALAILFYKEMLRL---------------KDPESENPIF---------PDRFT 121

Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFE--- 388
           F  ++   SG+V  +LG Q+H  + K     ++ + NALI MY +C ++++A  +F+   
Sbjct: 122 FPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMV 181

Query: 389 ---------------------------EMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
                                      ++   + +VSW AMI G    G   +AL +F+ 
Sbjct: 182 ERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQ 241

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M+   V P  I+ ISVL ACA  G +E G+       +  G+  +     +L+++  + G
Sbjct: 242 MQIVGVEPDEISIISVLPACAQLGALEVGKW-IHMYCDRNGLLRKTSICNALMEMYSKCG 300

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN----VELAQVAAEALMKVEPENSTPYV 537
            +  A  L   M  + D   W  ++G    H      +EL +   +A  K+EP N   ++
Sbjct: 301 CIGQAYQLFDQMS-KGDVISWSTMIGGLANHGKAREAIELFKRMKKA--KIEP-NGITFL 356

Query: 538 LLYNMYADVGRWDDA 552
            L +  A  G W++ 
Sbjct: 357 GLLSACAHAGFWNEG 371


>gi|297803844|ref|XP_002869806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315642|gb|EFH46065.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 852

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 155/415 (37%), Positives = 251/415 (60%), Gaps = 17/415 (4%)

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
           D  E    ++N+L+ GY + G ++EAR++FDKIP            ++++VSWN +I  Y
Sbjct: 425 DIAEKNTVSWNSLLHGYLESGNLDEARRVFDKIP------------EKDVVSWNLIISSY 472

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           AK GD+ +A  +F  M  + + +WN +I GY++  +M+ A   F  MP  ++++W  M+S
Sbjct: 473 AKKGDMSNACSLFLTMPLKSSATWNILIGGYVNCREMKLARTYFDTMPQKNSVSWITMIS 532

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE--KPDR 330
           GY ++G+++ A   F++M +K+ + +++MIA    N   + A+KLF QM       +PD 
Sbjct: 533 GYTKLGDVQSAEKLFRQMSRKDKLVYDAMIACYAQNGKPKDALKLFSQMLESNSDIQPDE 592

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEE 389
            T SS++S SS + D   G  +   +T+  I  D  ++ +LI +Y + G   +A  +F +
Sbjct: 593 ITLSSVVSASSQLGDTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKLFND 652

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           + + K+ VS++AMI GC  +G ATEA  LF+ M   K+ P  +TF  +LSA +H+GLV+E
Sbjct: 653 L-IKKDTVSYSAMIMGCGINGMATEANCLFREMIEKKIPPNLVTFTGLLSAYSHSGLVQE 711

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           G + F SM  ++ +EP  +H+  +VD++GR GRLE+A +LIK MP +P+  VWGALL A 
Sbjct: 712 GYKCFNSM-KDHNLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLAS 770

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
            +HNNVE  ++A    +K+E + +     L N+Y  VGRWDDA  VR  M+   +
Sbjct: 771 GLHNNVEFGEIACSHCVKLETDPTGYLSHLANIYTSVGRWDDARNVRDSMEEKKL 825



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/407 (28%), Positives = 203/407 (49%), Gaps = 48/407 (11%)

Query: 4   GYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTW 63
           GY+   EMAK  K+FD++ +++ VSWN ++ GY+ S   G L+EAR +FD +PE+D V+W
Sbjct: 414 GYI---EMAK--KVFDDIAEKNTVSWNSLLHGYLES---GNLDEARRVFDKIPEKDVVSW 465

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N +IS YAK G+M  A  LF +MP ++  +WN +I G++   ++  A  +FD MP ++S 
Sbjct: 466 NLIISSYAKKGDMSNACSLFLTMPLKSSATWNILIGGYVNCREMKLARTYFDTMPQKNSV 525

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
           S   ++SG  + G++  A + L +  SR D    LV  Y+ +I  Y Q G+ ++A KLF 
Sbjct: 526 SWITMISGYTKLGDVQSAEK-LFRQMSRKD---KLV--YDAMIACYAQNGKPKDALKLFS 579

Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
           ++       E N   + + ++ +S++   ++ GD                 S+ T +  Y
Sbjct: 580 QML------ESNSDIQPDEITLSSVVSASSQLGDT----------------SFGTWVESY 617

Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
           I        +   +K+   D L   +++  Y + G+   A   F  + +K+ VS+++MI 
Sbjct: 618 I--------TEHGIKI---DDLLSTSLIDLYMKGGDFAKAFKLFNDLIKKDTVSYSAMIM 666

Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ-IHQMVTKTVIP 362
           GC  N     A  LF +M  +   P+  TF+ +LS  S    +  G +  + M    + P
Sbjct: 667 GCGINGMATEANCLFREMIEKKIPPNLVTFTGLLSAYSHSGLVQEGYKCFNSMKDHNLEP 726

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
                  ++ M  R G + EA  + + M +  N   W A++     H
Sbjct: 727 SADHYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLH 773



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 155/300 (51%), Gaps = 17/300 (5%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++ GY++   + +AR++FD++P++DVVSWN++IS Y      G +  A  LF  MP +  
Sbjct: 437 LLHGYLESGNLDEARRVFDKIPEKDVVSWNLIISSYAK---KGDMSNACSLFLTMPLKSS 493

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
            TWN +I GY    EM+ A   F++MP +N VSW  MISG+ + GDV +A + F +M  +
Sbjct: 494 ATWNILIGGYVNCREMKLARTYFDTMPQKNSVSWITMISGYTKLGDVQSAEKLFRQMSRK 553

Query: 121 DSASLSALVSGLIQNGELDEAARVLVK-CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
           D     A+++   QNG+  +A ++  +   S  D   D +   ++++    Q G      
Sbjct: 554 DKLVYDAMIACYAQNGKPKDALKLFSQMLESNSDIQPDEI-TLSSVVSASSQLGDTSFGT 612

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
            +   I       E  ++   +++S  S+I  Y K GD   A ++F  ++++DT S++ M
Sbjct: 613 WVESYIT------EHGIKID-DLLS-TSLIDLYMKGGDFAKAFKLFNDLIKKDTVSYSAM 664

Query: 240 ISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
           I G        EA+ LF +M      P+ +T+  ++S Y+  G ++     F  M   NL
Sbjct: 665 IMGCGINGMATEANCLFREMIEKKIPPNLVTFTGLLSAYSHSGLVQEGYKCFNSMKDHNL 724



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 147/325 (45%), Gaps = 59/325 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I GYV  REM  AR  FD MPQ++ VSW  MISGY      G ++ A  LF  M  +D 
Sbjct: 499 LIGGYVNCREMKLARTYFDTMPQKNSVSWITMISGYTK---LGDVQSAEKLFRQMSRKDK 555

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           + ++ +I+ YA+ G+ ++AL+LF+ M                 N D+             
Sbjct: 556 LVYDAMIACYAQNGKPKDALKLFSQM--------------LESNSDIQP----------- 590

Query: 121 DSASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
           D  +LS++VS   Q G+      V   + + G + D   DL+    +LI  Y + G   +
Sbjct: 591 DEITLSSVVSASSQLGDTSFGTWVESYITEHGIKID---DLLST--SLIDLYMKGGDFAK 645

Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DT 233
           A KLF+ +             K++ VS+++MIM     G    A  +F +M+E+    + 
Sbjct: 646 AFKLFNDL------------IKKDTVSYSAMIMGCGINGMATEANCLFREMIEKKIPPNL 693

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKR 289
            ++  ++S Y H   ++E    F  M      P    +  MV    + G LE A +  K 
Sbjct: 694 VTFTGLLSAYSHSGLVQEGYKCFNSMKDHNLEPSADHYGIMVDMLGRAGRLEEAYELIKS 753

Query: 290 MP-QKNLVSWNSMI--AGCETNKDY 311
           MP Q N   W +++  +G   N ++
Sbjct: 754 MPMQPNAGVWGALLLASGLHNNVEF 778



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 2/137 (1%)

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
           L  FK     +  SW  ++     ++ ++  + ++I+M   G  P  H  +S+L     +
Sbjct: 319 LHGFKSSKGMDSFSWGCLVRFLSQHRKFKETVGVYIEMHYSGIPPSSHAITSVLRACGKM 378

Query: 344 VDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
            D+  G  IH Q +   +   V +   L+ +Y+R G I  A+ +F+++   KN VSWN++
Sbjct: 379 EDMVDGKPIHAQALKNGLCGCVYVQTGLVGLYSRFGYIEMAKKVFDDIA-EKNTVSWNSL 437

Query: 403 IGGCASHGFATEALELF 419
           + G    G   EA  +F
Sbjct: 438 LHGYLESGNLDEARRVF 454


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 184/542 (33%), Positives = 298/542 (54%), Gaps = 27/542 (4%)

Query: 47   EARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR----NVVSWNAMISGFL 102
            +A  LF  +P      WN +I G+++T +  EA+R +N M ++    N +++  ++    
Sbjct: 748  KANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACA 807

Query: 103  QNGDVA-NAIEFFDRMPGRDSASL--SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLV 159
            +  +V+   +       G DS     +AL+ G     EL  A +V  +   R     DLV
Sbjct: 808  RISNVSCTTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSER-----DLV 862

Query: 160  RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD-- 217
             ++N+LI GYG+  R  E   +F+++ +   +G+         V+   +++     G+  
Sbjct: 863  -SWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDA--------VTMVKVVLACTVLGEWG 913

Query: 218  VVSA--REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275
            VV A    I E  +E D +  NT+I  Y     ++ A  +F +M   + ++WNAM+ GY 
Sbjct: 914  VVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYG 973

Query: 276  QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
            + GNL  A   F  MP ++++SW SMI+       +  A++LF +M V   KPD  T +S
Sbjct: 974  KAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVAS 1033

Query: 336  ILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394
            +LS  + I  L +G  +H+ + K  V  D+ + NALI MY +CGA+ +   +FEEM   +
Sbjct: 1034 VLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGK-R 1092

Query: 395  NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
            + VSW ++I G A +G A  AL LF  M    V PT+ TF+ VL ACAHAG+V++G ++F
Sbjct: 1093 DSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYF 1152

Query: 455  KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
            +SM   YG+ P ++H+  +VD++ R G L  A + IK MP +PD  VW  LL A +VH N
Sbjct: 1153 ESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGN 1212

Query: 515  VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
            + LA++A + L++ +P NS  Y+L  N YA   RW+D  ++R LM+ +N+ KP+  S V+
Sbjct: 1213 LHLAEIATKKLLETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVE 1272

Query: 575  FS 576
             +
Sbjct: 1273 IN 1274



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 197/461 (42%), Gaps = 71/461 (15%)

Query: 1    MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG----FLEEAR------- 49
            +I GY    E+  ARK+FDEM +RD+VSWN +I GY   R         EE R       
Sbjct: 836  LIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGD 895

Query: 50   -------------------------YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
                                     Y+ +   E D    NT+I  Y +   ++ A R+F+
Sbjct: 896  AVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFD 955

Query: 85   SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
             M  RN+VSWNAMI G+ + G++  A + FD MP RD  S ++++S   Q G+  +A R+
Sbjct: 956  RMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRL 1015

Query: 145  LVKCG-SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
              +   ++    E  V +  +     G     E   +   K  VN D           I 
Sbjct: 1016 FQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNAD-----------IY 1064

Query: 204  SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM---- 259
              N++I  Y K G V     +FE+M +RD+ SW ++I+G       + A NLF  M    
Sbjct: 1065 VGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREG 1124

Query: 260  PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC-----ETNKDYEGA 314
              P   T+  ++   A  G ++  L++F+ M +   ++      GC       + +   A
Sbjct: 1125 VRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRA 1184

Query: 315  IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPIN--NALIT 372
             +   +M ++   PD   +  +LS S    +LHL     ++ TK ++   P N  N +++
Sbjct: 1185 YEFIKRMPMD---PDVVVWRILLSASQVHGNLHLA----EIATKKLLETDPSNSGNYILS 1237

Query: 373  MYARCGA-----IVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
                 G+     +++ R + EE  + K   S +  I    S
Sbjct: 1238 SNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVEINDSDS 1278



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 148/347 (42%), Gaps = 50/347 (14%)

Query: 220  SAREIFEQMLERDTFSWNTMISGY-IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
            S   + +++L  D  S   ++  Y +   ++ +A+ LF ++P P    WN M+ G++Q  
Sbjct: 716  SFSNMIKELLPTDPISIFNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQ-- 773

Query: 279  NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
                                        TN+  E AI+ +  M  +    +  T+  +L 
Sbjct: 774  ----------------------------TNQPIE-AIRNYNLMYSQALFGNNLTYPFLLK 804

Query: 339  MSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
              + I ++     +H  V K     D+ ++NALI  YA    +  AR +F+EM   +++V
Sbjct: 805  ACARISNVSC-TTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMS-ERDLV 862

Query: 398  SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA---HAGLVEEGRQHF 454
            SWN++I G       +E L +F+ MR   V    +T + V+ AC      G+V+   ++ 
Sbjct: 863  SWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEY- 921

Query: 455  KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
               + E  +E  +    +L+D+ GR   ++ A  +   M  + +   W A++       N
Sbjct: 922  ---IEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMR-DRNMVSWNAMIMGYGKAGN 977

Query: 515  VELAQVAAEALMKVEPENST-PYVLLYNMYADVGRWDDANEVRLLMK 560
            +    VAA  L    P      +  + + Y+  G++  A  VRL  +
Sbjct: 978  L----VAARKLFDDMPHRDVISWTSMISSYSQAGQFGKA--VRLFQE 1018


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 174/549 (31%), Positives = 295/549 (53%), Gaps = 38/549 (6%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L  A  +FD + E + + WNT+  G+A + +   AL L+  M +  +V  +      L+ 
Sbjct: 53  LTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKA 112

Query: 105 GDVANAIEFFDRMPGR--------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
              + A     ++ G         D    ++L++  ++NG  ++A +V  +   R     
Sbjct: 113 CAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHR----- 167

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D+V +Y  LI GY   G +  A+K+FD+IPV            +++VSWN++I  YA+ G
Sbjct: 168 DVV-SYTALIKGYASNGYIXSAQKMFDEIPV------------KDVVSWNALISGYAETG 214

Query: 217 DVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWN 268
           +   A E+F++M++     D  +  T++S       +E    +   +       +    N
Sbjct: 215 NYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVN 274

Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           A++  Y + G +E A   F+ +  K+++SWN++I G      Y+ A+ LF +M   GE P
Sbjct: 275 ALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 334

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKT---VIPDVPINNALITMYARCGAIVEARI 385
           +  T  SIL   + +  + +G  IH  + K    V     +  +LI MYA+CG I  A+ 
Sbjct: 335 NEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQ 394

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F+ M L +++ SWNAMI G A HG A  A ++F  MR   + P  ITF+ +LSAC+H+G
Sbjct: 395 VFDSM-LNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSG 453

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           +++ GR  F+SM  +Y I P++EH+  ++D++G  G  ++A ++I  M  +PD  +W +L
Sbjct: 454 MLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSL 513

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           L AC++H NVEL +  A+ L+K+EP+NS  YVLL N+YA  GRW++  + R L+    +K
Sbjct: 514 LKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMK 573

Query: 566 KPTGYSWVD 574
           K  G S ++
Sbjct: 574 KVPGCSSIE 582



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 188/429 (43%), Gaps = 87/429 (20%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+     +I+ Y+ +   G  E+AR +FD    RD V++  +I GYA  G +  A ++F+
Sbjct: 137 DLYVHTSLIAMYVKN---GRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFD 193

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            +P ++VVSWNA+ISG+ + G+   A+E F  M              +  N + DE+  V
Sbjct: 194 EIPVKDVVSWNALISGYAETGNYKEALELFKEM--------------MKTNVKPDESTMV 239

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
                              T++    Q   +E  R++   I    D G     F  N+  
Sbjct: 240 -------------------TVLSACAQSASIELGRQVHSWID---DHG-----FGSNLKI 272

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----P 260
            N++I  Y K G+V +A  +FE +  +D  SWNT+I GY H+   +EA  LF +M     
Sbjct: 273 VNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 332

Query: 261 HPDTLT------------------W-------------------NAMVSGYAQIGNLELA 283
            P+ +T                  W                    +++  YA+ G++E A
Sbjct: 333 SPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAA 392

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F  M  ++L SWN+MI G   +     A  +F +M+ +G +PD  TF  +LS  S  
Sbjct: 393 QQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHS 452

Query: 344 VDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
             L LG  I + +T+   + P +     +I +    G   EA  +   M++  + V W +
Sbjct: 453 GMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCS 512

Query: 402 MIGGCASHG 410
           ++  C  HG
Sbjct: 513 LLKACKMHG 521



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 161/348 (46%), Gaps = 25/348 (7%)

Query: 220 SAREIFEQMLERDTFSWNTMISGYI-------HVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           S R I  +M++    + N  +S  I       H   +  A ++F  +  P+ L WN M  
Sbjct: 17  SLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFR 76

Query: 273 GYAQIGNLELALDFFKRMPQKNLV----SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           G+A   +   AL  +  M    LV    ++  ++  C  +K +    ++   +   G   
Sbjct: 77  GHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDL 136

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFE 388
           D +  +S+++M    V         ++  ++   DV    ALI  YA  G I  A+ +F+
Sbjct: 137 DLYVHTSLIAM---YVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFD 193

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
           E+  +K+VVSWNA+I G A  G   EALELFK M    V P   T ++VLSACA +  +E
Sbjct: 194 EIP-VKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIE 252

Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
            GRQ   S ++++G    ++   +L+D+  + G +E A  L +G+ ++ D   W  L+G 
Sbjct: 253 LGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYK-DVISWNTLIGG 310

Query: 509 CRVHNNV--ELAQVAAEALMKVEPENSTPYVLLYNMYA-----DVGRW 549
              H N+  E   +  E L   E  N    + +    A     D+GRW
Sbjct: 311 -YTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRW 357



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 150/365 (41%), Gaps = 68/365 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           +I GY     +  A+K+FDE+P +DVVSWN +ISGY     +G  +EA  LF      ++
Sbjct: 175 LIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAE---TGNYKEALELFKEMMKTNV 231

Query: 55  MPE--------------------RDCVTW-------------NTVISGYAKTGEMEEALR 81
            P+                    R   +W             N +I  Y K GE+E A  
Sbjct: 232 KPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASG 291

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGE 137
           LF  +  ++V+SWN +I G+        A+  F  M       +  ++ +++      G 
Sbjct: 292 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGA 351

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           +D    + V    R  G  +      +LI  Y + G +E A+++FD +            
Sbjct: 352 IDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM------------ 399

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
             R++ SWN+MI  +A  G    A +IF +M    +E D  ++  ++S   H   ++   
Sbjct: 400 LNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGR 459

Query: 254 NLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCET 307
           ++F  M       P    +  M+      G  + A +    M    + V W S++  C+ 
Sbjct: 460 HIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKM 519

Query: 308 NKDYE 312
           + + E
Sbjct: 520 HGNVE 524


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 181/533 (33%), Positives = 284/533 (53%), Gaps = 31/533 (5%)

Query: 59  DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
           D  T N++++ YAK G + +A R+F+ MPAR++VSWN M+ G++ NG  A A+  F  M 
Sbjct: 154 DVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMN 213

Query: 119 -----GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
                G DS  + A ++       L    R +     R  G E  V+   +L+  Y + G
Sbjct: 214 DALQVGHDSVGVIAALAACCLESAL-ALGREIHGYAIR-HGLEQDVKVGTSLVDMYCKCG 271

Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
            V  A  +F K+P+            R +V+WN MI  YA     V A + F QM   D 
Sbjct: 272 NVFFAENVFAKMPL------------RTVVTWNCMIGGYALNERPVDAFDCFMQM-RVDG 318

Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPH---------PDTLTWNAMVSGYAQIGNLELAL 284
           F    + +  +     +  S+LF +  H         P  +   A++  Y ++G +E + 
Sbjct: 319 FQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSE 378

Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
             F ++  K LVSWN+MIA     + Y+ AI LF+++  +   PD  T ++++     + 
Sbjct: 379 KIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLG 438

Query: 345 DLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
            +    Q+H  + K    D   I NA++ MYARCG IV +R IF++M   K+V+SWN +I
Sbjct: 439 SIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPG-KDVISWNTII 497

Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
            G A HG    ALE+F  M+   + P   TF+SVL+AC+ +GL  EG + F SM  EYG+
Sbjct: 498 IGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAEGWKEFNSMQQEYGM 557

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE 523
            P+IEH+  + D++GR G L + +  I+ MP  P   +WG+LL A R  N++++A+ AAE
Sbjct: 558 IPQIEHYGCMTDLLGRAGELREVLRFIENMPIAPTSRIWGSLLTASRNKNDIDIAEYAAE 617

Query: 524 ALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
            + ++E  N+  YV+L +MYAD GRW+D   +R LMK   +++    S V+ +
Sbjct: 618 RIFQLEHNNTGCYVVLSSMYADAGRWEDVERIRSLMKEKGLRRTEARSLVELN 670



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 200/471 (42%), Gaps = 99/471 (21%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEA--RYLFDIMP-- 56
           +++ Y K   +  A ++FD MP RD+VSWN M+ GY+S+ G G L  A  R + D +   
Sbjct: 161 LVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSN-GMGALALACFREMNDALQVG 219

Query: 57  ----------------------------------ERDCVTWNTVISGYAKTGEMEEALRL 82
                                             E+D     +++  Y K G +  A  +
Sbjct: 220 HDSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENV 279

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAA 142
           F  MP R VV+WN MI G+  N    +A + F +M           V G     E+  A 
Sbjct: 280 FAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQM----------RVDGF--QVEVVTAI 327

Query: 143 RVLVKCGSRCDG--GEDLVRAY-------------NTLIVGYGQRGRVEEARKLFDKIPV 187
            +L  C        G   V AY               L+  YG+ G+VE + K+F +I  
Sbjct: 328 NLLTACAQTESSLFGRS-VHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQIT- 385

Query: 188 NCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGY 243
                       + +VSWN+MI  Y        A  +F ++L +    D F+  T++  +
Sbjct: 386 -----------DKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAF 434

Query: 244 IHVLDMEEASNL---FVKMPHPD-TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
           + +  + +   +    VK+ + D TL  NA++  YA+ GN+  + + F +MP K+++SWN
Sbjct: 435 VLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWN 494

Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS-------GIVDLHLGMQI 352
           ++I G   +   + A+++F +M+  G +P+  TF S+L+  S       G  + +   Q 
Sbjct: 495 TIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAEGWKEFNSMQQE 554

Query: 353 HQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
           + M     IP +     +  +  R G + E     E M +      W +++
Sbjct: 555 YGM-----IPQIEHYGCMTDLLGRAGELREVLRFIENMPIAPTSRIWGSLL 600



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 200/475 (42%), Gaps = 43/475 (9%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PG 119
            ++I  +   G M+EA   F  +        N MI GF       +A+  +  M      
Sbjct: 58  KSLILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGAR 117

Query: 120 RDSASLSALVSGLIQNGELDE---AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
            D  +   ++    + G L E   A   ++K G   D     V   N+L+  Y + G V 
Sbjct: 118 PDRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGAD-----VYTANSLVALYAKLGLVG 172

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
           +A ++FD +P             R+IVSWN+M+  Y   G    A   F +M   D    
Sbjct: 173 DAERVFDGMPA------------RDIVSWNTMVDGYVSNGMGALALACFREM--NDALQV 218

Query: 237 NTMISGYIHVLD---MEEASNLFVKMP--------HPDTLTWNAMVSGYAQIGNLELALD 285
                G I  L    +E A  L  ++           D     ++V  Y + GN+  A +
Sbjct: 219 GHDSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAEN 278

Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
            F +MP + +V+WN MI G   N+    A   F+QM+V+G + +  T  ++L+  +    
Sbjct: 279 VFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTES 338

Query: 346 LHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
              G  +H  +V +  +P V +  AL+ MY + G +  +  IF ++   K +VSWN MI 
Sbjct: 339 SLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQIT-DKTLVSWNNMIA 397

Query: 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN-EYGI 463
                    EA+ LF  + +  + P Y T  +V+ A    G + + +Q    +V   YG 
Sbjct: 398 AYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGD 457

Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
              I +  +++ +  R G +  + ++   MP + D   W  ++    +H   ++A
Sbjct: 458 STLIMN--AVMHMYARCGNIVASREIFDKMPGK-DVISWNTIIIGYAIHGQGKIA 509


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 189/630 (30%), Positives = 308/630 (48%), Gaps = 82/630 (13%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYI--------------------------- 37
           Y +   +  A KLF+E P + V  WN ++  Y                            
Sbjct: 46  YARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDN 105

Query: 38  --------SSRGSGFLEEARYLFDIMPER---DCVTWNTVISGYAKTGEMEEALRLFNSM 86
                   S  G   LE  + +   + ++   D    + +I  Y+K G+M +A+++F   
Sbjct: 106 YTVSIALKSCSGLQKLELGKMIHGFLKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEY 165

Query: 87  PARNVVSWNAMISGFLQNGDVANAIEFFDRMP-----GRDSASLSALVSGLIQNGELDEA 141
           P  +VV W ++I+G+ QNG    A+ FF RM        D  +L +  S   Q  + +  
Sbjct: 166 PKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLG 225

Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
             V      R  G +  +   N+++  YG+ G +  A  LF ++P             ++
Sbjct: 226 RSVHGFVKRR--GFDTKLCLANSILNLYGKTGSIRIAANLFREMPY------------KD 271

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLE-RDTFSWNTMISGY--------------IHV 246
           I+SW+SM+ CYA  G   +A  +F +M++ R   +  T+IS                IH 
Sbjct: 272 IISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHK 331

Query: 247 LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           L +     L       D     A++  Y +  + E A++ F RMP+K++VSW  + +G  
Sbjct: 332 LAVNYGFEL-------DITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYA 384

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP- 365
                  ++ +F  M   G +PD      IL+ SS +  +   + +H  VTK+   +   
Sbjct: 385 EIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEF 444

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           I  +LI +YA+C +I  A  +F+ ++   +VV+W+++I     HG   EAL+L   M + 
Sbjct: 445 IGASLIELYAKCSSIDNANKVFKGLRH-TDVVTWSSIIAAYGFHGQGEEALKLSHQMSNH 503

Query: 426 K-VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
             V P  +TF+S+LSAC+HAGL+EEG + F  MVNEY + P IEH+  +VD++GR G L+
Sbjct: 504 SDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNIEHYGIMVDLLGRMGELD 563

Query: 485 DAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
            A+D+I  MP +    VWGALLGACR+H N+++ ++AA  L  ++P ++  Y LL N+Y 
Sbjct: 564 KALDMINNMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIYC 623

Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
               W DA ++R L+K N +KK  G S V+
Sbjct: 624 VDKNWHDAAKLRTLIKENRLKKIVGQSMVE 653



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 202/467 (43%), Gaps = 78/467 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS-----GFLEEARYLFDIM 55
           +I  Y K  +M  A K+F E P+ DVV W  +I+GY    GS      F      L  + 
Sbjct: 145 LIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGY-EQNGSPELALAFFSRMVVLEQVS 203

Query: 56  PE----------------------------------RDCVTWNTVISGYAKTGEMEEALR 81
           P+                                  + C+  N++++ Y KTG +  A  
Sbjct: 204 PDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLA-NSILNLYGKTGSIRIAAN 262

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           LF  MP ++++SW++M++ +  NG   NA+  F+ M  +    +  ++ + +     +  
Sbjct: 263 LFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSN 322

Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           L+E  ++    V  G   D     +     L+  Y +    E A +LF+++P        
Sbjct: 323 LEEGKQIHKLAVNYGFELD-----ITVSTALMDMYLKCFSPENAIELFNRMP-------- 369

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME 250
               K+++VSW  +   YA+ G    +  +F  ML      D  +   +++    +  ++
Sbjct: 370 ----KKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQ 425

Query: 251 EASNL--FVKMPHPDT--LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           +A  L  FV     D       +++  YA+  +++ A   FK +   ++V+W+S+IA   
Sbjct: 426 QALCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYG 485

Query: 307 TNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTK-TVIP 362
            +   E A+KL  QM    + KP+  TF SILS  S  G+++  + M  H MV +  ++P
Sbjct: 486 FHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKM-FHVMVNEYQLMP 544

Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           ++     ++ +  R G + +A  +   M +      W A++G C  H
Sbjct: 545 NIEHYGIMVDLLGRMGELDKALDMINNMPMQAGPHVWGALLGACRIH 591


>gi|302789674|ref|XP_002976605.1| hypothetical protein SELMODRAFT_105472 [Selaginella moellendorffii]
 gi|300155643|gb|EFJ22274.1| hypothetical protein SELMODRAFT_105472 [Selaginella moellendorffii]
          Length = 614

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 191/584 (32%), Positives = 292/584 (50%), Gaps = 60/584 (10%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I  Y   R +A A  +F E+  R++ + N+ I+    +   G   +AR LF   P RD 
Sbjct: 47  LIQMYGACRSIASAMAVFRELRVRNLFTINITIAALAQN---GCFRDARSLFVESPRRDV 103

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF-DRMPG 119
           +TWN++++  A+   + EA  +F  MPAR+VVS NAMI+ F Q G +  A  FF D M  
Sbjct: 104 ITWNSMLTIAAQRLRIGEAWEVFARMPARSVVSANAMIAAFAQCGQIREAQGFFRDAMAE 163

Query: 120 RDSASLSALVSGLIQNGELDEAARVL--------VKCGSRCDG---------GEDLVRAY 162
           RD +S + L+   + +GE+D A  V         V   S   G          E+L  A 
Sbjct: 164 RDVSSWNNLLHACVSSGEVDLARSVFDAMPHWDCVAWSSMIQGYAERRMMRDAEELFLAL 223

Query: 163 N--------TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
           +        ++I GYG  G++++AR+LF ++              R+ V+WN+MI   A+
Sbjct: 224 DHPDLMSITSMIAGYGSVGKIDQARELFSRMK------------HRDTVAWNAMIQALAE 271

Query: 215 AGDVVSAREIFEQMLE-RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
            G +  AR+ F+ M   R+  SWNTMIS Y     ++ A  LF +    + +TW AM+  
Sbjct: 272 NGRIEEARQAFDSMTAPRNLSSWNTMISAYAQAGLVDRARELFDQTLDKNVVTWTAMMHA 331

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           + Q G L  A      MP+ N+VSW +MI     +     AI+LF  M +EG +P R T 
Sbjct: 332 HGQAGQLREARSILDAMPEPNIVSWTTMITAYAQHGASADAIQLFRIMDLEGFQPTRVTI 391

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKTVIPDV---------PINNALITMYARCGAIVEAR 384
            S+L  ++ I D  L   I        +PD+          + N+L+ ++ R G + +AR
Sbjct: 392 VSVLFAATAIQDPSLAHHI--------LPDIRHSGLYREGAVGNSLVHLFGRSGRLDDAR 443

Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
            IF+ M + ++ VSWN  I   A  G    AL+L +SM      P  ITF  VL A +H 
Sbjct: 444 EIFQGM-IDRSTVSWNIAITATAKAGHGRSALQLLESMALDGCAPDAITFSCVLFAWSHI 502

Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
           G +E   + F+SM  ++ +E  +EHF +++D++ R GR + A +L+  MP+EPD      
Sbjct: 503 GSLELAGECFRSMQQDFEVEALVEHFVAMIDLLARAGRADSAEELLHSMPYEPDDVALTT 562

Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
           L  A      V  A   A A+M++ PE  T YVLL ++    GR
Sbjct: 563 LAVARGSGGEVGGAASGAMAVMEMSPERPTAYVLLSSLSKQGGR 606



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 154/332 (46%), Gaps = 35/332 (10%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N +I  Y     + SA  +F ++  R+ F+ N  I+         +A +LFV+ P  D +
Sbjct: 45  NLLIQMYGACRSIASAMAVFRELRVRNLFTINITIAALAQNGCFRDARSLFVESPRRDVI 104

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG---CETNKDYEGAIKL----- 317
           TWN+M++  AQ   +  A + F RMP +++VS N+MIA    C   ++ +G  +      
Sbjct: 105 TWNSMLTIAAQRLRIGEAWEVFARMPARSVVSANAMIAAFAQCGQIREAQGFFRDAMAER 164

Query: 318 -------FIQMQVEGEKPD--RHTFSSI--------LSMSSGIVDLHLGMQIHQMVTKTV 360
                   +   V   + D  R  F ++         SM  G  +  +     ++     
Sbjct: 165 DVSSWNNLLHACVSSGEVDLARSVFDAMPHWDCVAWSSMIQGYAERRMMRDAEELFLALD 224

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
            PD+    ++I  Y   G I +AR +F  MK  ++ V+WNAMI   A +G   EA + F 
Sbjct: 225 HPDLMSITSMIAGYGSVGKIDQARELFSRMK-HRDTVAWNAMIQALAENGRIEEARQAFD 283

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
           SM + + L ++ T I   SA A AGLV+  R+ F   +++      +  + +++   G+ 
Sbjct: 284 SMTAPRNLSSWNTMI---SAYAQAGLVDRARELFDQTLDK-----NVVTWTAMMHAHGQA 335

Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
           G+L +A  ++  MP EP+   W  ++ A   H
Sbjct: 336 GQLREARSILDAMP-EPNIVSWTTMITAYAQH 366



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 149/327 (45%), Gaps = 32/327 (9%)

Query: 241 SGYIHVL-------DMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKR 289
           SGY+ +L       D+E    L  ++     H D    N ++  Y    ++  A+  F+ 
Sbjct: 7   SGYVVLLRRCIAGRDLEGGRRLHAQIIRSGWHTDLFVANLLIQMYGACRSIASAMAVFRE 66

Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
           +  +NL + N  IA    N  +  A  LF    VE  + D  T++S+L++++  + +   
Sbjct: 67  LRVRNLFTINITIAALAQNGCFRDARSLF----VESPRRDVITWNSMLTIAAQRLRIGEA 122

Query: 350 MQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
            ++  +M  ++V+      NA+I  +A+CG I EA+  F +    ++V SWN ++  C S
Sbjct: 123 WEVFARMPARSVVS----ANAMIAAFAQCGQIREAQGFFRDAMAERDVSSWNNLLHACVS 178

Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
            G    A  +F +M  +      + + S++   A   ++ +  + F ++ +     P + 
Sbjct: 179 SGEVDLARSVFDAMPHWDC----VAWSSMIQGYAERRMMRDAEELFLALDH-----PDLM 229

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528
              S++   G  G+++ A +L   M    D   W A++ A   +  +E A+ A +++   
Sbjct: 230 SITSMIAGYGSVGKIDQARELFSRMKHR-DTVAWNAMIQALAENGRIEEARQAFDSM--T 286

Query: 529 EPENSTPYVLLYNMYADVGRWDDANEV 555
            P N + +  + + YA  G  D A E+
Sbjct: 287 APRNLSSWNTMISAYAQAGLVDRAREL 313


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 198/632 (31%), Positives = 315/632 (49%), Gaps = 82/632 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------YISSRGSGFLEEARYLFD 53
           +I  Y+K   +  AR +FD +P++  V+W  MISG       Y+S +    L E   + D
Sbjct: 189 LIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPD 248

Query: 54  ------------IMP-----------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                       I+P                 E D    N +I  Y K G +  A +LFN
Sbjct: 249 GYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFN 308

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDE 140
            MP +N++SW  ++SG+ QN     A+E F  M       D  + S++++       L  
Sbjct: 309 GMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGF 368

Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
             +V         G +  V   N+LI  Y +   + +ARK+FD                 
Sbjct: 369 GTQVHAYTIKANLGNDSYVT--NSLIDMYAKCDCLTDARKVFDIFAA------------A 414

Query: 201 NIVSWNSMIMCYAKAG---DVVSAREIFEQM--------------LERDTFSWNTM-ISG 242
           ++V +N+MI  Y++ G   ++  A  IF  M              L R + S  ++ +S 
Sbjct: 415 DVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSK 474

Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
            IH L  +   NL       D    +A++  Y+    L+ +   F  M  K+LV WNSM 
Sbjct: 475 QIHGLMFKYGLNL-------DIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMF 527

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVI 361
           AG     + E A+ LF+++Q+  E+PD  TF+++++ +  +  + LG + H Q++ + + 
Sbjct: 528 AGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLE 587

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
            +  I NAL+ MYA+CG+  +A   F+     ++VV WN++I   A+HG   +AL++ + 
Sbjct: 588 CNPYITNALLDMYAKCGSPEDAHKAFDSAAS-RDVVCWNSVISSYANHGEGKKALQMLEK 646

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
           M S  + P YITF+ VLSAC+HAGLVE+G + F+ M+  +GIEP  EH+  +V ++GR G
Sbjct: 647 MMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML-RFGIEPETEHYVCMVSLLGRAG 705

Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
           RL  A +LI+ MP +P   VW +LL  C    NVELA+ AAE  +  +P++S  + +L N
Sbjct: 706 RLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSN 765

Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
           +YA  G W +A +VR  MK   + K  G SW+
Sbjct: 766 IYASKGMWTEAKKVRERMKVEGVVKEPGRSWI 797



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 134/479 (27%), Positives = 225/479 (46%), Gaps = 52/479 (10%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANA-IEFFD 115
           E D    N +I+ Y++ G M  A ++F  MP RN+VSW+ M+S    +G    + + F +
Sbjct: 76  ELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLE 135

Query: 116 RMPGRDSASLSALVSGLIQNGE-LDEAAR--------VLVKCGSRCDGGEDLVRAYNTLI 166
               R  +    ++S  IQ    LD   R         LVK G   D     V     LI
Sbjct: 136 FWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRD-----VYVGTLLI 190

Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
             Y + G ++ AR +FD +P            +++ V+W +MI    K G    + ++F 
Sbjct: 191 DFYLKDGNIDYARLVFDALP------------EKSTVTWTTMISGCVKMGRSYVSLQLFY 238

Query: 227 QMLERDTFSWNTMISGYIHVLDMEEASNL-FV---KMPHPDTLTW---------NAMVSG 273
           Q++E      N +  GYI    +   S L F+   K  H   L +         N ++  
Sbjct: 239 QLMED-----NVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDS 293

Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
           Y + G +  A   F  MP KN++SW ++++G + N  ++ A++LF  M   G KPD +  
Sbjct: 294 YVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYAC 353

Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKL 392
           SSIL+  + +  L  G Q+H    K  +  D  + N+LI MYA+C  + +AR +F ++  
Sbjct: 354 SSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVF-DIFA 412

Query: 393 LKNVVSWNAMIGGCASHGFA---TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
             +VV +NAMI G +  G      EAL +F+ MR   + P+ +TF+S+L A A    +  
Sbjct: 413 AADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGL 472

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
            +Q    ++ +YG+   I   ++L+D+      L+D+  +   M  + D  +W ++   
Sbjct: 473 SKQ-IHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVK-DLVIWNSMFAG 529



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 161/668 (24%), Positives = 290/668 (43%), Gaps = 122/668 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG------------------------- 35
           +I+ Y +   M  ARK+F++MP+R++VSW+ M+S                          
Sbjct: 85  LINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSP 144

Query: 36  --YISSR----GSGFLEEARYL-FDIMP-------ERDCVTWNTVISGYAKTGEMEEALR 81
             YI S      SG     R++ F +         +RD      +I  Y K G ++ A  
Sbjct: 145 NEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARL 204

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSG-----L 132
           +F+++P ++ V+W  MISG ++ G    +++ F ++       D   LS ++S       
Sbjct: 205 VFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPF 264

Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           ++ G+   A   +++ G   D         N LI  Y + GRV  A KLF+ +P      
Sbjct: 265 LEGGKQIHAH--ILRYGLEMDAS-----LMNVLIDSYVKCGRVIAAHKLFNGMP------ 311

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMIS--GYIHV 246
                  +NI+SW +++  Y +      A E+F  M    L+ D ++ +++++    +H 
Sbjct: 312 ------NKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHA 365

Query: 247 LDMEEASNLFVKMPH--PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           L      + +    +   D+   N+++  YA+   L  A   F      ++V +N+MI G
Sbjct: 366 LGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEG 425

Query: 305 CE---TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
                T  +   A+ +F  M+    +P   TF S+L  S+ +  L L  QIH ++ K  +
Sbjct: 426 YSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGL 485

Query: 362 P-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
             D+   +ALI +Y+ C  + ++R++F+EMK +K++V WN+M  G        EAL LF 
Sbjct: 486 NLDIFAGSALIDVYSNCYCLKDSRLVFDEMK-VKDLVIWNSMFAGYVQQSENEEALNLFL 544

Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE---------------- 464
            ++  +  P   TF ++++A  +   V+ G Q F   + + G+E                
Sbjct: 545 ELQLSRERPDEFTFANMVTAAGNLASVQLG-QEFHCQLLKRGLECNPYITNALLDMYAKC 603

Query: 465 --PRIEHFA-------------SLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALL 506
             P   H A             S++     HG  + A+ +++ M     EP+   +  +L
Sbjct: 604 GSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVL 663

Query: 507 GACRVHNNVELAQVAAEALMK--VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
            AC     VE      E +++  +EPE +  YV + ++    GR + A E+   M +   
Sbjct: 664 SACSHAGLVEDGLKQFELMLRFGIEPE-TEHYVCMVSLLGRAGRLNKARELIEKMPT--- 719

Query: 565 KKPTGYSW 572
            KP    W
Sbjct: 720 -KPAAIVW 726


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 173/533 (32%), Positives = 295/533 (55%), Gaps = 32/533 (6%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           ER+ V  N++++ Y K   ++ A ++F+ M  R+V+SWN++I+G++ NG     +  F +
Sbjct: 228 ERNSVG-NSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQ 286

Query: 117 MPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSR-CDGGEDLVRAYNTLIVGYGQ 171
           M       D A++ ++ +G   +  L    R +   G + C   ED  R  NTL+  Y +
Sbjct: 287 MLFSGIEIDLATIVSVFAG-CADSRLISLGRAVHCFGVKACFSRED--RFCNTLLDMYSK 343

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            G ++ A+ +F ++              R++VS+ SMI  YA+ G    A ++FE+M E 
Sbjct: 344 CGDLDSAKVVFREMS------------GRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391

Query: 232 ----DTFSWNTMIS--GYIHVLDMEEASNLFVKMPHP--DTLTWNAMVSGYAQIGNLELA 283
               D ++   +++      +LD  +  + ++K      D    NA++  YA+ G++  A
Sbjct: 392 GISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREA 451

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSG 342
              F  M  K+++SWN++I G   N     A+ LF  + VE    PD  T + +L   + 
Sbjct: 452 ELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACAS 511

Query: 343 IVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
           +     G +IH  + +     D  + N+L+ MYA+CGA++ AR++F+++   K++VSW  
Sbjct: 512 LSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITS-KDLVSWTV 570

Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
           MI G   HGF  EA+ LF  MR   + P  I+F+S+L AC+H+GLV+EG + F  M +E 
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 630

Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
            IEP +EH+A +VD++ R G L  A   I+ MP  PD  +WGALL  CR+H++V+LA+  
Sbjct: 631 KIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERV 690

Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           AE + ++EPEN+  YVL+ N+YA+  +W++   +R  +    ++K  G SW++
Sbjct: 691 AEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIE 743



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 137/494 (27%), Positives = 240/494 (48%), Gaps = 47/494 (9%)

Query: 70  YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASL 125
           Y   G+++EA R+F+ +     + WN +++   ++GD + +I  F +M       DS + 
Sbjct: 139 YTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198

Query: 126 SALVSGL-----IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
           S +         +  GE      +    G R   G       N+L+  Y +  RV+ ARK
Sbjct: 199 SCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVG-------NSLVAFYLKNHRVDSARK 251

Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSW 236
           +FD++             +R+++SWNS+I  Y   G       +F QML    E D  + 
Sbjct: 252 VFDEMT------------ERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATI 299

Query: 237 NTMISGYI--HVLDMEEASNLF-VK--MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
            ++ +G     ++ +  A + F VK      D    N ++  Y++ G+L+ A   F+ M 
Sbjct: 300 VSVFAGCADSRLISLGRAVHCFGVKACFSREDRFC-NTLLDMYSKCGDLDSAKVVFREMS 358

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
            +++VS+ SMIAG         A+KLF +M+ EG  PD +T +++L+  +    L  G +
Sbjct: 359 GRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKR 418

Query: 352 IHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           +H+ + +  +  D+ ++NAL+ MYA+CG++ EA ++F EM+ +K+++SWN +IGG + + 
Sbjct: 419 VHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMR-VKDIISWNTVIGGYSKNC 477

Query: 411 FATEALELFKSMRSFKVL-PTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIE 468
           +A EAL LF  +   K   P   T   VL ACA     ++GR+ H   M N Y  +  + 
Sbjct: 478 YANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA 537

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK- 527
           +  SLVD+  + G L  A  L   +    D   W  ++    +H   + A      + + 
Sbjct: 538 N--SLVDMYAKCGALLLARLLFDDIT-SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQA 594

Query: 528 -VEPENSTPYVLLY 540
            +EP+  +   LLY
Sbjct: 595 GIEPDEISFVSLLY 608



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 128/468 (27%), Positives = 210/468 (44%), Gaps = 81/468 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           +++ Y+K   +  ARK+FDEM +RDV+SWN +I+GY+S   +G  E+   +F  M     
Sbjct: 236 LVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVS---NGLAEKGLSVFVQMLFSGI 292

Query: 57  ERDCVT-----------------------------------WNTVISGYAKTGEMEEALR 81
           E D  T                                    NT++  Y+K G+++ A  
Sbjct: 293 EIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKV 352

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
           +F  M  R+VVS+ +MI+G+ + G    A++ F+ M       D  +++A+++   +N  
Sbjct: 353 VFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRL 412

Query: 138 LDEAARV--LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
           LDE  RV   +K     D G D+  + N L+  Y + G + EA  +F ++ V        
Sbjct: 413 LDEGKRVHEWIK---ENDMGFDIFVS-NALMDMYAKCGSMREAELVFSEMRV-------- 460

Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI-------SGYIHVLD 248
               ++I+SWN++I  Y+K      A  +F  +L    FS +             +   D
Sbjct: 461 ----KDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFD 516

Query: 249 MEEASNLFVKMP--HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
                + ++       D    N++V  YA+ G L LA   F  +  K+LVSW  MIAG  
Sbjct: 517 KGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYG 576

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL--SMSSGIVD---LHLGMQIHQMVTKTVI 361
            +   + AI LF QM+  G +PD  +F S+L     SG+VD       +  H+     + 
Sbjct: 577 MHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHEC---KIE 633

Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           P V     ++ M AR G + +A    E M +  +   W A++ GC  H
Sbjct: 634 PTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIH 681



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 167/360 (46%), Gaps = 23/360 (6%)

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE-----QMLERDTFSWNTMISGYI 244
           DR +    F R++   N+ +  + ++G++ +A ++        +  R   S   + +   
Sbjct: 49  DRADSITTFDRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPRTLCSVLQLCADSK 108

Query: 245 HVLDMEEASNLFVKMPH--PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
            + D +E  N F++      D+   + +   Y   G+L+ A   F ++  +  + WN ++
Sbjct: 109 SLKDGKEVDN-FIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILM 167

Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP 362
                + D+ G+I LF +M   G + D +TFS +    S +  ++ G Q+H  + K+   
Sbjct: 168 NELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFG 227

Query: 363 DV-PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
           +   + N+L+  Y +   +  AR +F+EM   ++V+SWN++I G  S+G A + L +F  
Sbjct: 228 ERNSVGNSLVAFYLKNHRVDSARKVFDEMT-ERDVISWNSIINGYVSNGLAEKGLSVFVQ 286

Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE---PRIEHFA-SLVDIV 477
           M    +     T +SV + CA + L+  GR      V+ +G++    R + F  +L+D+ 
Sbjct: 287 MLFSGIEIDLATIVSVFAGCADSRLISLGRA-----VHCFGVKACFSREDRFCNTLLDMY 341

Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
            + G L+ A  + + M      +    + G  R      LA  A +   ++E E  +P V
Sbjct: 342 SKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREG----LAGEAVKLFEEMEEEGISPDV 397


>gi|357512007|ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355501307|gb|AES82510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 650

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 178/545 (32%), Positives = 284/545 (52%), Gaps = 39/545 (7%)

Query: 52  FDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAI 111
           FD         WN+++S Y+K GE   A  +F+ MP R+ VSWN MISGFL+NGD   + 
Sbjct: 69  FDGSQRNALFIWNSLLSMYSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSF 128

Query: 112 EFFDRMPGR-------DSASLSALVSG-----LIQNGELDEAARVLVKCGSRCDGGEDLV 159
           +FF +M          D A+L+ ++SG     L  +  + +    LV  G    G E  +
Sbjct: 129 KFFKQMTESNRVCCRFDKATLTTMLSGCDGLRLGISTSVTQMIHGLVFVG----GFEREI 184

Query: 160 RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVV 219
              N LI  Y +     + RK+FD++             +RN+V+W ++I   A+     
Sbjct: 185 TVGNALITSYFKCECFSQGRKVFDEM------------IERNVVTWTAVISGLAQNEFYE 232

Query: 220 SAREIFEQMLERDTFSWNTMI--------SGYIHVLDMEEASNLFVKMP-HPDTLTWNAM 270
            +  +F QM    + S N +         SG   + D ++   L  K+    D    +A+
Sbjct: 233 DSLRLFAQMRCCGSVSPNVLTYLSSLMACSGLQVLRDGQKIHGLLWKLGMQSDLCIESAL 292

Query: 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330
           +  Y++ G+L+ A   F+   + + VS   ++     N   E AI++F +M   G + D 
Sbjct: 293 MDLYSKCGSLDAAWQIFESAEELDGVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVDA 352

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEE 389
           +  S++L +      L LG QIH ++ K    + P + N L+ MY++CG + ++ ++F +
Sbjct: 353 NMVSAVLGVFGVGTYLALGKQIHSLIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFYQ 412

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           M   KN VSWN++I   A HG   +AL+ ++ MR   V PT +TF+S+L AC+HAGLVE+
Sbjct: 413 MTQ-KNSVSWNSVIAAFARHGDGFKALQFYEEMRVEGVAPTDVTFLSLLHACSHAGLVEK 471

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           G +  +SM N++GI PR EH+A +VD++GR G L +A   I+G+P      VW ALLGAC
Sbjct: 472 GMELLESMTNDHGISPRSEHYACVVDMLGRAGHLNEAKKFIEGLPEHGGVLVWQALLGAC 531

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
            +H + E+ + AA+ L    P +  PYVL+ N+Y+  G W +       MK   + K  G
Sbjct: 532 SIHGDSEMGKYAADRLFSAAPASPAPYVLMANIYSSEGNWKERASSIKRMKEMGVAKEVG 591

Query: 570 YSWVD 574
            SW++
Sbjct: 592 ISWIE 596



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 116/494 (23%), Positives = 202/494 (40%), Gaps = 125/494 (25%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYL--------- 51
           ++S Y K  E   A  +FD MP RD VSWN MISG++  R   F    ++          
Sbjct: 83  LLSMYSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFL--RNGDFDTSFKFFKQMTESNRV 140

Query: 52  ---FDIMP--------------------------------ERDCVTWNTVISGYAKTGEM 76
              FD                                   ER+    N +I+ Y K    
Sbjct: 141 CCRFDKATLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITSYFKCECF 200

Query: 77  EEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSAS------LSALV- 129
            +  ++F+ M  RNVV+W A+ISG  QN    +++  F +M    S S      LS+L+ 
Sbjct: 201 SQGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLSSLMA 260

Query: 130 -SGL-----------------IQNGELDEAA--RVLVKCGSR------CDGGEDLVRAYN 163
            SGL                 +Q+    E+A   +  KCGS        +  E+L     
Sbjct: 261 CSGLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFESAEELDGVSL 320

Query: 164 TLI-VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           T+I V + Q G  EEA ++F K+          +    N+VS  +++  +     +   +
Sbjct: 321 TVILVAFAQNGFEEEAIQIFTKMVAL------GMEVDANMVS--AVLGVFGVGTYLALGK 372

Query: 223 EIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
           +I   ++++    + F  N +++ Y    D+ ++  +F +M   ++++WN++++ +A+ G
Sbjct: 373 QIHSLIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQKNSVSWNSVIAAFARHG 432

Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
                 D FK                         A++ + +M+VEG  P   TF S+L 
Sbjct: 433 ------DGFK-------------------------ALQFYEEMRVEGVAPTDVTFLSLLH 461

Query: 339 MSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNV 396
             S    +  GM++ + +T    + P       ++ M  R G + EA+   E +     V
Sbjct: 462 ACSHAGLVEKGMELLESMTNDHGISPRSEHYACVVDMLGRAGHLNEAKKFIEGLPEHGGV 521

Query: 397 VSWNAMIGGCASHG 410
           + W A++G C+ HG
Sbjct: 522 LVWQALLGACSIHG 535


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 198/637 (31%), Positives = 311/637 (48%), Gaps = 136/637 (21%)

Query: 21  MPQRDVVSWNVMISGY-------------ISSRGSGFLEEARYLFDIMPERDCVT----- 62
           MP+RDVVSWN ++S +             +S   SGF      L  ++P   C T     
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPA--CGTEQEEK 58

Query: 63  --------------------WNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
                                N ++  Y K G++E ++++F+ M  +N VSWN+ I  FL
Sbjct: 59  FGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFL 118

Query: 103 QNGDVANAIEFFDRM------PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
             G   + +  F +M      PG  S +LS+L+  L++ G  D    V          G 
Sbjct: 119 NAGFYGDVLRMFRKMSEHNVMPG--SITLSSLLPALVELGSFDLGREV---------HGY 167

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
            + RA +                                     +I   NS++  YAK G
Sbjct: 168 SIKRAMDL------------------------------------DIFVANSLVDMYAKFG 191

Query: 217 DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLT------ 266
            +  A  IFEQM +R+  SWN MI+  +      EA  L   M      P+++T      
Sbjct: 192 SLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLP 251

Query: 267 ----------------W-------------NAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
                           W             NA++  Y++ G L LA + F+R  +K+ VS
Sbjct: 252 ACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER-SEKDDVS 310

Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
           +N++I G   +     ++ LF QM+  G   D  +F   LS  + +     G +IH ++ 
Sbjct: 311 YNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLV 370

Query: 358 KTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
           + ++   P ++N+L+ +Y + G +V A  IF ++   K+V SWN MI G   HG    A 
Sbjct: 371 RRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITK-KDVASWNTMILGYGMHGQIDIAF 429

Query: 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476
           ELF+ M+   +   ++++I+VL+AC+H GLV++G+++F  MV +  IEP+  H+A +VD+
Sbjct: 430 ELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEPQQMHYACMVDL 488

Query: 477 VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536
           +GR G+L    ++I+ MPF  +  VWGALLGACR+H N+ELAQ AAE L +++PE+S  Y
Sbjct: 489 LGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYY 548

Query: 537 VLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
            L+ NMYA+ GRW++AN++R LMKS  ++K   YSWV
Sbjct: 549 TLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWV 585



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 111/515 (21%), Positives = 191/515 (37%), Gaps = 176/515 (34%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           ++  Y K  ++  + ++FD M +++ VSWN  I  ++++   GF  +   +F      ++
Sbjct: 82  LVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNA---GFYGDVLRMFRKMSEHNV 138

Query: 55  MP---------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
           MP                                 + D    N+++  YAK G +E+A  
Sbjct: 139 MPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKAST 198

Query: 82  LFNSMPARNVVSWNAMISGFLQN----------------GDVANAIEFFDRMPGRDSASL 125
           +F  M  RNVVSWNAMI+  +QN                G+  N+I   + +P    A +
Sbjct: 199 IFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPA--CARM 256

Query: 126 SALVSGL------IQNGELDE--AARVLVKCGSRCDGGEDLVR-----------AYNTLI 166
           ++L  G       I+ G + +   +  L+   S+C G   L R           +YNTLI
Sbjct: 257 ASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKC-GQLSLARNIFERSEKDDVSYNTLI 315

Query: 167 VGYGQRGRVEEARKLFDKI-PVNCDRG---------------------EGNVRFKRNIVS 204
           +GY Q     E+  LF ++  V  D                       E +    R ++S
Sbjct: 316 LGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLS 375

Query: 205 W-----NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
                 NS++  Y K G +V+A +IF ++ ++D  SWNTMI                   
Sbjct: 376 GHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMI------------------- 416

Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL----VSWNSMIAGCETNKDYEGAI 315
                        GY   G +++A + F+ M    L    VS+ +++A C      +   
Sbjct: 417 ------------LGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGK 464

Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYA 375
           K F QM  +  +P +  ++                                   ++ +  
Sbjct: 465 KYFSQMVAQNIEPQQMHYA----------------------------------CMVDLLG 490

Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           R G + +   I  +M    N   W A++G C  HG
Sbjct: 491 RAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHG 525



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 23/190 (12%)

Query: 5   YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP----ERDC 60
           Y K   +  A K+F+++ ++DV SWN MI GY      G ++ A  LF++M     + D 
Sbjct: 388 YTKGGMLVTASKIFNKITKKDVASWNTMILGY---GMHGQIDIAFELFELMKGDGLDYDH 444

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNV----VSWNAMISGFLQNGDVANAIEFFDR 116
           V++  V++  +  G +++  + F+ M A+N+    + +  M+    + G ++   E    
Sbjct: 445 VSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRD 504

Query: 117 MPGRDSASLSALVSGLIQ---NGELDE-AARVLVKCGSRCDGGEDLVRAYNTLIVG-YGQ 171
           MP   ++ +   + G  +   N EL + AA  L +      G       Y TL++  Y +
Sbjct: 505 MPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSG-------YYTLMINMYAE 557

Query: 172 RGRVEEARKL 181
            GR  EA K+
Sbjct: 558 TGRWNEANKI 567


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 192/627 (30%), Positives = 309/627 (49%), Gaps = 75/627 (11%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           +++  V R +M  ARK+FD M Q   + WN MI GY S        +A  LF  M     
Sbjct: 59  LLASPVSRHDMPYARKVFDRMAQPTAIVWNCMIRGYNSCHAP---MDALELFRAMRRSGV 115

Query: 56  -PER------------------------------------DCVTWNTVISGYAKTGEMEE 78
            P+                                     D    + +I+ Y  +  +E+
Sbjct: 116 SPDNYTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVED 175

Query: 79  ALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQ 134
           A ++F  M  R+VVSW  MIS F Q G   N +   D M       +  ++ +L+S   Q
Sbjct: 176 ARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQ 235

Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
              +D+   V  +      G E  V   N LI  Y + G + +A K F  +P+       
Sbjct: 236 VRAVDKGLWVYARVDEY--GIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPI------- 286

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME 250
                RN  SWN++I  + + G    A  +FE+ML      D  +  +++S Y  + D++
Sbjct: 287 -----RNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQ 341

Query: 251 EASNL--FVKMP--HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
           +   L  ++K    H D +  N++++ YA+ G++  A   F+ M ++++VSW +M+ G  
Sbjct: 342 QGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYV 401

Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT-KTVIPDVP 365
               +  A  LF  M+V           S+LS  S +  L  G +IH  +  K+V  D+ 
Sbjct: 402 KGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMW 461

Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
           + +AL+ MYA+CG I  A  IF  M+  K  ++WNAMIGG AS G   EA+ LF+ +   
Sbjct: 462 LESALVDMYAKCGCIDAAAEIFSRMRH-KQTLAWNAMIGGLASQGQGKEAVALFEQLLKL 520

Query: 426 K-VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
           +   P  IT   VL AC H G+V+EG  +F  M+   GI P  EH+  +VD++GR G L+
Sbjct: 521 RDPKPDAITLKVVLCACTHVGMVDEGLHYFNLMLT-LGIVPDNEHYGCIVDLLGRAGLLD 579

Query: 485 DAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
           +A + I+ MP +P+  +WG+LL ACRVH+ +EL ++  + ++ + P +   +VL+ N++A
Sbjct: 580 EAYNFIQKMPIQPNPVIWGSLLAACRVHHRMELGKIIGQHIIDLAPNDVGAHVLISNLHA 639

Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYS 571
           + G+WDD  +VR +M S  ++K  G+S
Sbjct: 640 EEGQWDDVEQVRGMMGSRRVEKSPGHS 666



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 232/496 (46%), Gaps = 40/496 (8%)

Query: 65  TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GR 120
           T+++      +M  A ++F+ M     + WN MI G+       +A+E F  M       
Sbjct: 58  TLLASPVSRHDMPYARKVFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSP 117

Query: 121 DSASLSALVSGLI-----QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
           D+ +++A+          +     +A   LV+   R     DL    + LI  YG    V
Sbjct: 118 DNYTMAAVAQSSAAFASWKGRATGDAVHALVQ---RIGFASDLF-VMSGLINFYGASKSV 173

Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT-- 233
           E+ARK+F+++             +R++VSW  MI  +A+ G   +     ++M    T  
Sbjct: 174 EDARKVFEEM------------HERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKP 221

Query: 234 --FSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFF 287
              +  +++S    V  +++   ++ ++       D    NA++  Y + G +  A   F
Sbjct: 222 NKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTF 281

Query: 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
           K MP +N  SWN++I G   N  ++ A+ +F +M  +G  PD  T  S+LS  + + DL 
Sbjct: 282 KGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQ 341

Query: 348 LGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
            G  +H  +    I  D+ + N+LI MYA+CG +  A IIFE M   +++VSW AM+ G 
Sbjct: 342 QGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMA-RRDIVSWTAMVCGY 400

Query: 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466
                   A  LF  M+   V+ + +  +S+LSAC+  G +++GR+   S + E  +   
Sbjct: 401 VKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGRE-IHSYIKEKSVRTD 459

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM 526
           +   ++LVD+  + G ++ A ++   M  +   A W A++G        + A    E L+
Sbjct: 460 MWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLA-WNAMIGGLASQGQGKEAVALFEQLL 518

Query: 527 KV---EPENSTPYVLL 539
           K+   +P+  T  V+L
Sbjct: 519 KLRDPKPDAITLKVVL 534


>gi|356518834|ref|XP_003528082.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Glycine max]
          Length = 875

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 201/652 (30%), Positives = 311/652 (47%), Gaps = 108/652 (16%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM---PER------------ 58
           A  +FD +  +DVVSWN MI+G   +R    +E+A  LF  M   P R            
Sbjct: 201 AYAVFDNIAYKDVVSWNAMIAGLAENR---LVEDAFLLFSSMVKGPTRPNYATVANILPV 257

Query: 59  ----------------------------DCVTWNTVISGYAKTGEMEEALRLFNSMPARN 90
                                       D    N +IS Y K G+M EA  LF +M AR+
Sbjct: 258 CASFDKSVAYYCGRQIHSYVLQWPELSADVSVCNALISLYLKVGQMREAEALFWTMDARD 317

Query: 91  VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVL--VKC 148
           +V+WNA I+G+  NG+   A+  F  +     ASL  L+   +    +  A   L  +K 
Sbjct: 318 LVTWNAFIAGYTSNGEWLKALHLFGNL-----ASLETLLPDSVTMVSILPACAQLKNLKV 372

Query: 149 GSRCDGGEDLVRAY--------------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
           G +       + AY              N L+  Y + G  EEA   F  I +  D    
Sbjct: 373 GKQ-------IHAYIFRHPFLFYDTAVGNALVSFYAKCGYTEEAYHTFSMISMK-DLISW 424

Query: 195 NVRF-----KRNIVSWNSMIMCYAKA---GDVVSAREIF---------EQMLERDTFSW- 236
           N  F     KR+   + S++ C  K     D V+   I          E++ E  ++S  
Sbjct: 425 NSIFDAFGEKRHHSRFLSLLHCMLKLRIRPDSVTILAIIRLCASLLRVEKVKEIHSYSIR 484

Query: 237 -------------NTMISGYIHVLDMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLEL 282
                        N ++  Y    +ME A+ +F  +     L T N+++SGY  +G+   
Sbjct: 485 TGSLLSNTAPTVGNAILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHHD 544

Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
           A   F  M + +L +WN M+     N   E A+ L  ++Q  G KPD  T  S+L + + 
Sbjct: 545 ANMIFSGMSETDLTTWNLMVRVYAENDCPEQALGLCHELQARGMKPDTVTIMSLLPVCTQ 604

Query: 343 IVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
           +  +HL  Q    + ++   D+ +  AL+  YA+CG I  A  IF+ +   K++V + AM
Sbjct: 605 MASVHLLSQCQGYIIRSCFKDLHLEAALLDAYAKCGIIGRAYKIFQ-LSAEKDLVMFTAM 663

Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
           IGG A HG + EAL +F  M    + P +I F S+LSAC+HAG V+EG + F S+   +G
Sbjct: 664 IGGYAMHGMSEEALWIFSHMLKLGIQPDHIIFTSILSACSHAGRVDEGLKIFYSIEKLHG 723

Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
           ++P +E +A +VD++ R GR+ +A  L+  +P E +  +WG LLGAC+ H+ VEL ++ A
Sbjct: 724 MKPTVEQYACVVDLLARGGRISEAYSLVTSLPIEANANLWGTLLGACKTHHEVELGRIVA 783

Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
             L K+E  +   Y++L N+YA   RWD   EVR +M++ ++KKP G SW++
Sbjct: 784 NQLFKIEANDIGNYIVLSNLYAADARWDGVMEVRRMMRNKDLKKPAGCSWIE 835



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 150/667 (22%), Positives = 280/667 (41%), Gaps = 122/667 (18%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYI-----------------SSRGS- 42
           +++ Y K   + +  KLFD++   D V WN+++SG+                  SSR + 
Sbjct: 84  LLNMYAKCGMLVECLKLFDQLSHCDPVVWNIVLSGFSGSNKCDADVMRVFRMMHSSREAL 143

Query: 43  ----------------GFLEEAR----YLFDIMPERDCVTWNTVISGYAKTGEM-EEALR 81
                           G L+  +    Y+     ++D +  N ++S YAK G +  +A  
Sbjct: 144 PNSVTVATVLPVCARLGDLDAGKCVHGYVIKSGFDQDTLGGNALVSMYAKCGLVSHDAYA 203

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM-PGRDSASLSALVSGLIQNGELDE 140
           +F+++  ++VVSWNAMI+G  +N  V +A   F  M  G    + + + + L      D+
Sbjct: 204 VFDNIAYKDVVSWNAMIAGLAENRLVEDAFLLFSSMVKGPTRPNYATVANILPVCASFDK 263

Query: 141 AARVLVKCGSRCDG--------GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
           +  V   CG +             D V   N LI  Y + G++ EA  LF  +       
Sbjct: 264 S--VAYYCGRQIHSYVLQWPELSAD-VSVCNALISLYLKVGQMREAEALFWTMDA----- 315

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN--TMIS-----GYIH 245
                  R++V+WN+ I  Y   G+ + A  +F  +   +T   +  TM+S       + 
Sbjct: 316 -------RDLVTWNAFIAGYTSNGEWLKALHLFGNLASLETLLPDSVTMVSILPACAQLK 368

Query: 246 VLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSM 301
            L + +  + ++   HP    DT   NA+VS YA+ G  E A   F  +  K+L+SWNS+
Sbjct: 369 NLKVGKQIHAYI-FRHPFLFYDTAVGNALVSFYAKCGYTEEAYHTFSMISMKDLISWNSI 427

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-- 359
                  + +   + L   M     +PD  T  +I+ + + ++ +    +IH    +T  
Sbjct: 428 FDAFGEKRHHSRFLSLLHCMLKLRIRPDSVTILAIIRLCASLLRVEKVKEIHSYSIRTGS 487

Query: 360 -VIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG---GCASHGFAT- 413
            +    P + NA++  Y++CG +  A  +F+ +   +N+V+ N++I    G  SH  A  
Sbjct: 488 LLSNTAPTVGNAILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHHDANM 547

Query: 414 ---------------------------EALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
                                      +AL L   +++  + P  +T +S+L  C     
Sbjct: 548 IFSGMSETDLTTWNLMVRVYAENDCPEQALGLCHELQARGMKPDTVTIMSLLPVCTQMAS 607

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHF---ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           V     H  S    Y I    +     A+L+D   + G +  A  + + +  E D  ++ 
Sbjct: 608 V-----HLLSQCQGYIIRSCFKDLHLEAALLDAYAKCGIIGRAYKIFQ-LSAEKDLVMFT 661

Query: 504 ALLGACRVHNNVELAQVAAEALMK--VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
           A++G   +H   E A      ++K  ++P++   +  + +  +  GR D+  ++   ++ 
Sbjct: 662 AMIGGYAMHGMSEEALWIFSHMLKLGIQPDH-IIFTSILSACSHAGRVDEGLKIFYSIEK 720

Query: 562 NNIKKPT 568
            +  KPT
Sbjct: 721 LHGMKPT 727



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 121/257 (47%), Gaps = 15/257 (5%)

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLE-RDTFSWN-TMISGYIHVLDMEEASNL-- 255
           R+  +W S+I           A  +F   L+  + F  + T+++  +       A NL  
Sbjct: 4   RDFKTWGSVIWSLCLEAKHSEALSLFHHCLKGHEAFKPDHTVLAAILKSCSALLAPNLGR 63

Query: 256 -----FVKMPHPDT-LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE-TN 308
                 VK  H    +T   +++ YA+ G L   L  F ++   + V WN +++G   +N
Sbjct: 64  TLHGYVVKQGHGSCHVTNKGLLNMYAKCGMLVECLKLFDQLSHCDPVVWNIVLSGFSGSN 123

Query: 309 KDYEGAIKLFIQMQVEGEK-PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPI 366
           K     +++F  M    E  P+  T +++L + + + DL  G  +H  V K+    D   
Sbjct: 124 KCDADVMRVFRMMHSSREALPNSVTVATVLPVCARLGDLDAGKCVHGYVIKSGFDQDTLG 183

Query: 367 NNALITMYARCGAIV-EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
            NAL++MYA+CG +  +A  +F+ +   K+VVSWNAMI G A +    +A  LF SM   
Sbjct: 184 GNALVSMYAKCGLVSHDAYAVFDNIAY-KDVVSWNAMIAGLAENRLVEDAFLLFSSMVKG 242

Query: 426 KVLPTYITFISVLSACA 442
              P Y T  ++L  CA
Sbjct: 243 PTRPNYATVANILPVCA 259



 Score = 45.8 bits (107), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 70/154 (45%), Gaps = 12/154 (7%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
           ++  Y K   + +A K+F    ++D+V +  MI GY      G  EEA ++F  M     
Sbjct: 632 LLDAYAKCGIIGRAYKIFQLSAEKDLVMFTAMIGGYAM---HGMSEEALWIFSHMLKLGI 688

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARN-----VVSWNAMISGFLQNGDVANAI 111
           + D + + +++S  +  G ++E L++F S+   +     V  +  ++    + G ++ A 
Sbjct: 689 QPDHIIFTSILSACSHAGRVDEGLKIFYSIEKLHGMKPTVEQYACVVDLLARGGRISEAY 748

Query: 112 EFFDRMPGRDSASLSALVSGLIQNGELDEAARVL 145
                +P   +A+L   + G  +     E  R++
Sbjct: 749 SLVTSLPIEANANLWGTLLGACKTHHEVELGRIV 782


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 171/521 (32%), Positives = 283/521 (54%), Gaps = 33/521 (6%)

Query: 66  VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----D 121
           +I  YA+ G +E A ++F+  P   V +WNAMI  + + G +  A+  + RM       D
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPD 104

Query: 122 SASLSALVSGLIQNGEL---DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
           S++ + ++    ++ +L   +E  R  V  G     G+D+      L + Y + G+++EA
Sbjct: 105 SSTYTVVLKACTRSLDLRSGEETWRQAVDQGY----GDDVFVGAAVLNL-YAKCGKMDEA 159

Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNT 238
            ++FDK+             +R++V W +MI   A+ G    A +I+ QM ++       
Sbjct: 160 MRVFDKMG------------RRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGV 207

Query: 239 MISGYIHVLDMEEASNLFVKMPH--------PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
           ++ G I        S + + +           D +   ++V  YA+ G+LELA   F+RM
Sbjct: 208 VMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRM 267

Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
             KN++SW+++I+G   N     A++L + MQ  G KPD  +  S+L   S +  L LG 
Sbjct: 268 LYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGK 327

Query: 351 QIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
            +H  + + +  D   + A+I MY++CG++  AR +F+++   ++ +SWNA+I     HG
Sbjct: 328 SVHGYIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISF-RDSISWNAIIASYGIHG 386

Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
              EAL LF  MR   V P + TF S+LSA +H+GLVE+GR  F  MVNEY I+P  +H+
Sbjct: 387 SGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHY 446

Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
           A +VD++ R GR+E+A +LI+ M  EP  A+W ALL  C  H    + ++AA+ ++++ P
Sbjct: 447 ACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNP 506

Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
           ++   Y L+ N +A   RWD+  EVR +MK   +KK  GYS
Sbjct: 507 DDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYS 547



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 118/464 (25%), Positives = 214/464 (46%), Gaps = 73/464 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           +I  Y +   +  AR++FD+ PQ  V +WN MI  Y S RG+ F  EA  L+  M     
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAY-SRRGAMF--EALSLYHRMASEGV 101

Query: 58  -----------RDCV----------TWN---------------TVISGYAKTGEMEEALR 81
                      + C           TW                 V++ YAK G+M+EA+R
Sbjct: 102 RPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMR 161

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN-GELDE 140
           +F+ M  R++V W  MI+G  QNG    A++ + +M  +       ++ GLIQ    L  
Sbjct: 162 VFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGH 221

Query: 141 AARVLVKCGS--RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
           +   L   G   R D   D++    +L+  Y + G +E A  +F ++             
Sbjct: 222 SKMGLSIHGYMIRKDIIMDVI-VQTSLVDMYAKNGHLELASCVFRRM------------L 268

Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASN 254
            +N++SW+++I  +A+ G   +A ++   M     + D+ S  +++     V  ++   +
Sbjct: 269 YKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKS 328

Query: 255 L---FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
           +    V+  H D ++  A++  Y++ G+L  A   F ++  ++ +SWN++IA    +   
Sbjct: 329 VHGYIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSG 388

Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSM--SSGIVD---LHLGMQIHQMVTKTVIPDVPI 366
           E A+ LF+QM+    KPD  TF+S+LS    SG+V+       + +++     + P    
Sbjct: 389 EEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEY---KIQPSEKH 445

Query: 367 NNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
              ++ + +R G + EA+ + E M     +  W A++ GC +HG
Sbjct: 446 YACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHG 489



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 6/158 (3%)

Query: 351 QIHQMVTKTVIPDVPINNA-LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           +IH ++  T I     +NA LI  YAR G I  AR +F++      V +WNAMI   +  
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQC-GVDAWNAMIIAYSRR 83

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE-YGIEPRIE 468
           G   EAL L+  M S  V P   T+  VL AC  +  +  G + ++  V++ YG +  + 
Sbjct: 84  GAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVG 143

Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
             A+++++  + G++++AM +   M    D   W  ++
Sbjct: 144 --AAVLNLYAKCGKMDEAMRVFDKMG-RRDLVCWTTMI 178


>gi|334186821|ref|NP_194007.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635615|sp|P0C8Q5.1|PP336_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g22760
 gi|332659255|gb|AEE84655.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 578

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/427 (37%), Positives = 253/427 (59%), Gaps = 17/427 (3%)

Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
           D  E    ++N+L+ GY + G ++EAR++FDKIP            +++ VSWN +I  Y
Sbjct: 164 DIAEKNTVSWNSLLHGYLESGELDEARRVFDKIP------------EKDAVSWNLIISSY 211

Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           AK GD+ +A  +F  M  +   SWN +I GY++  +M+ A   F  MP  + ++W  M+S
Sbjct: 212 AKKGDMGNACSLFSAMPLKSPASWNILIGGYVNCREMKLARTYFDAMPQKNGVSWITMIS 271

Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE--KPDR 330
           GY ++G+++ A + F+ M +K+ + +++MIA    N   + A+KLF QM       +PD 
Sbjct: 272 GYTKLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDE 331

Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEE 389
            T SS++S +S + +   G  +   +T+  I  D  ++ +LI +Y + G   +A  +F  
Sbjct: 332 ITLSSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSN 391

Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
           +   K+ VS++AMI GC  +G ATEA  LF +M   K+ P  +TF  +LSA +H+GLV+E
Sbjct: 392 LNK-KDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQE 450

Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
           G + F SM  ++ +EP  +H+  +VD++GR GRLE+A +LIK MP +P+  VWGALL A 
Sbjct: 451 GYKCFNSM-KDHNLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLAS 509

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
            +HNNVE  ++A    +K+E + +     L  +Y+ VGRWDDA  VR  +K   + K  G
Sbjct: 510 GLHNNVEFGEIACSHCVKLETDPTGYLSHLAMIYSSVGRWDDARTVRDSIKEKKLCKTLG 569

Query: 570 YSWVDFS 576
            SWV+ S
Sbjct: 570 CSWVEGS 576



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 167/316 (52%), Gaps = 44/316 (13%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           A+K FD++ +++ VSWN ++ GY+ S   G L+EAR +FD +PE+D V+WN +IS YAK 
Sbjct: 158 AKKAFDDIAEKNTVSWNSLLHGYLES---GELDEARRVFDKIPEKDAVSWNLIISSYAKK 214

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI 133
           G+M  A  LF++MP ++  SWN +I G++   ++  A  +FD MP ++  S   ++SG  
Sbjct: 215 GDMGNACSLFSAMPLKSPASWNILIGGYVNCREMKLARTYFDAMPQKNGVSWITMISGYT 274

Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF----------- 182
           + G++ ++A  L +  S+ D    LV  Y+ +I  Y Q G+ ++A KLF           
Sbjct: 275 KLGDV-QSAEELFRLMSKKD---KLV--YDAMIACYTQNGKPKDALKLFAQMLERNSYIQ 328

Query: 183 -DKIP----VNCDRGEGNVRFKRNIVSW-------------NSMIMCYAKAGDVVSAREI 224
            D+I     V+ +   GN  F   + S+              S+I  Y K GD   A ++
Sbjct: 329 PDEITLSSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKM 388

Query: 225 FEQMLERDTFSWNTMISGYIHVLDMEEASNLFV-----KMPHPDTLTWNAMVSGYAQIGN 279
           F  + ++DT S++ MI G        EA++LF      K+P P+ +T+  ++S Y+  G 
Sbjct: 389 FSNLNKKDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIP-PNVVTFTGLLSAYSHSGL 447

Query: 280 LELALDFFKRMPQKNL 295
           ++     F  M   NL
Sbjct: 448 VQEGYKCFNSMKDHNL 463



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 176/409 (43%), Gaps = 91/409 (22%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G++E A+  FD + E++ V+WN+++ GY ++GE++EA R+F+ +P ++ VSWN +IS + 
Sbjct: 153 GYIELAKKAFDDIAEKNTVSWNSLLHGYLESGELDEARRVFDKIPEKDAVSWNLIISSYA 212

Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
           + GD+ NA   F  MP +  AS                                     +
Sbjct: 213 KKGDMGNACSLFSAMPLKSPAS-------------------------------------W 235

Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
           N LI GY     ++ AR  FD +P            ++N VSW +MI  Y K GDV SA 
Sbjct: 236 NILIGGYVNCREMKLARTYFDAMP------------QKNGVSWITMISGYTKLGDVQSAE 283

Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTLTWNAMVSGYAQ 276
           E+F  M ++D   ++ MI+ Y      ++A  LF +M        PD +T +++VS  +Q
Sbjct: 284 ELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQ 343

Query: 277 IGNLEL-----------------------------------ALDFFKRMPQKNLVSWNSM 301
           +GN                                      A   F  + +K+ VS+++M
Sbjct: 344 LGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNKKDTVSYSAM 403

Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ-IHQMVTKTV 360
           I GC  N     A  LF  M  +   P+  TF+ +LS  S    +  G +  + M    +
Sbjct: 404 IMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKDHNL 463

Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
            P       ++ M  R G + EA  + + M +  N   W A++     H
Sbjct: 464 EPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLH 512



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 139/303 (45%), Gaps = 42/303 (13%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I GYV  REM  AR  FD MPQ++ VSW  MISGY      G ++ A  LF +M ++D 
Sbjct: 238 LIGGYVNCREMKLARTYFDAMPQKNGVSWITMISGYTK---LGDVQSAEELFRLMSKKDK 294

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNV------VSWNAMISGFLQNGDVANA--IE 112
           + ++ +I+ Y + G+ ++AL+LF  M  RN       ++ ++++S   Q G+ +    +E
Sbjct: 295 LVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVE 354

Query: 113 FFDRMPG--RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG 170
            +    G   D    ++L+   ++ G+  +A ++      +     D V +Y+ +I+G G
Sbjct: 355 SYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNKK-----DTV-SYSAMIMGCG 408

Query: 171 QRGRVEEARKLF-----DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
             G   EA  LF      KIP              N+V++  ++  Y+ +G V    + F
Sbjct: 409 INGMATEANSLFTAMIEKKIP-------------PNVVTFTGLLSAYSHSGLVQEGYKCF 455

Query: 226 EQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNL 280
             M    LE     +  M+        +EEA  L   MP  P+   W A++       N+
Sbjct: 456 NSMKDHNLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLHNNV 515

Query: 281 ELA 283
           E  
Sbjct: 516 EFG 518



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 115/270 (42%), Gaps = 47/270 (17%)

Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QM 355
           SW  ++     ++ ++  + ++I M   G  P  H  +S+L     + ++  G  IH Q 
Sbjct: 71  SWGCLVRFLSQHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHAQA 130

Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
           +   +   V +   L+ +Y+R G I  A+  F+++   KN VSWN+++     HG+  E+
Sbjct: 131 LKNGLCGCVYVQTGLVGLYSRLGYIELAKKAFDDIA-EKNTVSWNSLL-----HGY-LES 183

Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
            EL ++ R F  +P                  E+    +  +++ Y              
Sbjct: 184 GELDEARRVFDKIP------------------EKDAVSWNLIISSY-------------- 211

Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
              + G + +A  L   MP +   A W  L+G       ++LA+   +A+ +   +N   
Sbjct: 212 --AKKGDMGNACSLFSAMPLK-SPASWNILIGGYVNCREMKLARTYFDAMPQ---KNGVS 265

Query: 536 YVLLYNMYADVGRWDDANEV-RLLMKSNNI 564
           ++ + + Y  +G    A E+ RL+ K + +
Sbjct: 266 WITMISGYTKLGDVQSAEELFRLMSKKDKL 295


>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 218/345 (63%), Gaps = 2/345 (0%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           D F+   ++  Y  +  +  A  LF +MP  D  TWN++++GYA+ G++E AL+ F +MP
Sbjct: 116 DMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMP 175

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE-GEKPDRHTFSSILSMSSGIVDLHLGM 350
            +N++SW ++I+G   N  Y  A+++FI ++ E G KP+  + +S+L   S +  L +G 
Sbjct: 176 VRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGK 235

Query: 351 QIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           +I           +  ++NA++ ++ARCG I EA+ +F+E+   +N+ SWN MI G A H
Sbjct: 236 RIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVH 295

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G   +AL+L+  M   K+ P  +TF+ +L AC H G+V EGRQ F+SM +++ + P++EH
Sbjct: 296 GRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEH 355

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           +  LVD++GR G L++A +LI+ MP  PD  +WG LLGAC  H NVEL +VAAE+L K+E
Sbjct: 356 YGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLE 415

Query: 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           P N   YV+L N+YA  G W     +R +MK  +I K  GYS+++
Sbjct: 416 PWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIE 460



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 147/285 (51%), Gaps = 28/285 (9%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G L  AR LFD MP RD  TWN++I+GYA++G ME AL LFN MP RNV+SW A+ISG+ 
Sbjct: 131 GMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYA 190

Query: 103 QNGDVANAIEFF-----DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGED 157
           QNG  A A+E F     ++    +  S+++++    Q G LD   R  ++  +R +G   
Sbjct: 191 QNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKR--IEAYARNNGFFK 248

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
                N ++  + + G +EEA+++FD+I             KRN+ SWN+MIM  A  G 
Sbjct: 249 NAYVSNAVLELHARCGNIEEAQQVFDEIGS-----------KRNLCSWNTMIMGLAVHGR 297

Query: 218 VVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWN 268
            + A ++++QML R    D  ++  ++    H   + E   LF  M       P    + 
Sbjct: 298 CIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYG 357

Query: 269 AMVSGYAQIGNLELALDFFKRMPQ-KNLVSWNSMIAGCETNKDYE 312
            +V    + G L+ A +  + MP   + V W +++  C  + + E
Sbjct: 358 CLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVE 402



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 158/312 (50%), Gaps = 39/312 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K   +  AR+LFDEMP RD+ +WN +I+GY  S   G +E A  LF+ MP R+ 
Sbjct: 123 LLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARS---GHMEAALELFNKMPVRNV 179

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPAR-----NVVSWNAMISGFLQNG--DVANAIEF 113
           ++W  +ISGYA+ G+  +AL +F  +        N VS  +++    Q G  D+   IE 
Sbjct: 180 ISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEA 239

Query: 114 FDRMPG--RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
           + R  G  +++   +A++    + G ++EA +V  + GS+ +     + ++NT+I+G   
Sbjct: 240 YARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRN-----LCSWNTMIMGLAV 294

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            GR  +A +L+D++ +         + + + V++  +++     G V   R++FE M   
Sbjct: 295 HGRCIDALQLYDQMLIR--------KMRPDDVTFVGLLLACTHGGMVAEGRQLFESM--E 344

Query: 232 DTFSWNTMISGYIHVLD-------MEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLEL- 282
             F     +  Y  ++D       ++EA NL   MP  PD++ W  ++   +  GN+EL 
Sbjct: 345 SKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELG 404

Query: 283 ---ALDFFKRMP 291
              A   FK  P
Sbjct: 405 EVAAESLFKLEP 416



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 178/431 (41%), Gaps = 74/431 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I   ++  ++  A  LFD++P+  V  +N  I  + S    G       L+  M  + C
Sbjct: 22  LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI---GHPHRCWLLYCQMCSQGC 78

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMP-------------ARNVVSWNAMISGFLQNGDV 107
                  + Y+ T        LFN  P             A ++ +  A++  + + G +
Sbjct: 79  SP-----NQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGML 133

Query: 108 ANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV 167
            +A + FD MP RD  + ++L++G  ++G ++ A  +  K   R       V ++  LI 
Sbjct: 134 RSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRN------VISWTALIS 187

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
           GY Q G+  +A ++F  I +  ++G      K N VS  S++   ++ G +   + I E 
Sbjct: 188 GYAQNGKYAKALEMF--IGLENEKGT-----KPNEVSIASVLPACSQLGALDIGKRI-EA 239

Query: 228 MLERDTFSWNTMISGYIHVL-----DMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLE 281
               + F  N  +S  +  L     ++EEA  +F ++     L +WN M+ G A  G   
Sbjct: 240 YARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCI 299

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            AL                               +L+ QM +   +PD  TF  +L   +
Sbjct: 300 DAL-------------------------------QLYDQMLIRKMRPDDVTFVGLLLACT 328

Query: 342 GIVDLHLGMQIHQ-MVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
               +  G Q+ + M +K  V P +     L+ +  R G + EA  + + M +  + V W
Sbjct: 329 HGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIW 388

Query: 400 NAMIGGCASHG 410
             ++G C+ HG
Sbjct: 389 GTLLGACSFHG 399



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 5/183 (2%)

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           +V  +N  I   +S G       L+  M S    P   +F  +  ACA    V  G Q  
Sbjct: 46  SVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPG-QML 104

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
            S   + G    +    +L+D+  + G L  A  L   MP   D   W +L+       +
Sbjct: 105 HSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVR-DIPTWNSLIAGYARSGH 163

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +E    A E   K+   N   +  L + YA  G++  A E+ + +++    KP   S   
Sbjct: 164 ME---AALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIAS 220

Query: 575 FSP 577
             P
Sbjct: 221 VLP 223


>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 218/345 (63%), Gaps = 2/345 (0%)

Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
           D F+   ++  Y  +  +  A  LF +MP  D  TWN++++GYA+ G++E AL+ F +MP
Sbjct: 116 DMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMP 175

Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE-GEKPDRHTFSSILSMSSGIVDLHLGM 350
            +N++SW ++I+G   N  Y  A+++FI ++ E G KP+  + +S+L   S +  L +G 
Sbjct: 176 VRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGK 235

Query: 351 QIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           +I           +  ++NA++ ++ARCG I EA+ +F+E+   +N+ SWN MI G A H
Sbjct: 236 RIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVH 295

Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
           G   +AL+L+  M   K+ P  +TF+ +L AC H G+V EGRQ F+SM +++ + P++EH
Sbjct: 296 GRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEH 355

Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
           +  LVD++GR G L++A +LI+ MP  PD  +WG LLGAC  H NVEL +VAAE+L K+E
Sbjct: 356 YGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLE 415

Query: 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           P N   YV+L N+YA  G W     +R +MK  +I K  GYS+++
Sbjct: 416 PWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIE 460



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 149/285 (52%), Gaps = 28/285 (9%)

Query: 43  GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
           G L  AR LFD MP RD  TWN++I+GYA++G ME AL LFN MP RNV+SW A+ISG+ 
Sbjct: 131 GMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYA 190

Query: 103 QNGDVANAIEFF-----DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGED 157
           QNG  A A+E F     ++    +  S+++++    Q G LD   R  ++  +R +G   
Sbjct: 191 QNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKR--IEAYARNNGFFK 248

Query: 158 LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217
                N ++  + + G +EEA+++FD+I        G+   KRN+ SWN+MIM  A  G 
Sbjct: 249 NAYVSNAVLELHARCGNIEEAQQVFDEI--------GS---KRNLCSWNTMIMGLAVHGR 297

Query: 218 VVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWN 268
            + A ++++QML R    D  ++  ++    H   + E   LF  M       P    + 
Sbjct: 298 CIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYG 357

Query: 269 AMVSGYAQIGNLELALDFFKRMPQ-KNLVSWNSMIAGCETNKDYE 312
            +V    + G L+ A +  + MP   + V W +++  C  + + E
Sbjct: 358 CLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVE 402



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 158/312 (50%), Gaps = 39/312 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K   +  AR+LFDEMP RD+ +WN +I+GY  S   G +E A  LF+ MP R+ 
Sbjct: 123 LLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARS---GHMEAALELFNKMPVRNV 179

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM-----PARNVVSWNAMISGFLQNG--DVANAIEF 113
           ++W  +ISGYA+ G+  +AL +F  +        N VS  +++    Q G  D+   IE 
Sbjct: 180 ISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEA 239

Query: 114 FDRMPG--RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
           + R  G  +++   +A++    + G ++EA +V  + GS+ +     + ++NT+I+G   
Sbjct: 240 YARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRN-----LCSWNTMIMGLAV 294

Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
            GR  +A +L+D++ +         + + + V++  +++     G V   R++FE M   
Sbjct: 295 HGRCIDALQLYDQMLIR--------KMRPDDVTFVGLLLACTHGGMVAEGRQLFESM--E 344

Query: 232 DTFSWNTMISGYIHVLD-------MEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLEL- 282
             F     +  Y  ++D       ++EA NL   MP  PD++ W  ++   +  GN+EL 
Sbjct: 345 SKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELG 404

Query: 283 ---ALDFFKRMP 291
              A   FK  P
Sbjct: 405 EVAAESLFKLEP 416



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 180/431 (41%), Gaps = 74/431 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           +I   ++  ++  A  LFD++P+  V  +N  I  + S    G       L+  M  + C
Sbjct: 22  LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI---GHPHRCWLLYCQMCSQGC 78

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMP-------------ARNVVSWNAMISGFLQNGDV 107
                  + Y+ T        LFN  P             A ++ +  A++  + + G +
Sbjct: 79  SP-----NQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGML 133

Query: 108 ANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV 167
            +A + FD MP RD  + ++L++G  ++G ++ A  +  K   R       V ++  LI 
Sbjct: 134 RSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRN------VISWTALIS 187

Query: 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227
           GY Q G+  +A ++F  I +  ++G      K N VS  S++   ++ G +   + I E 
Sbjct: 188 GYAQNGKYAKALEMF--IGLENEKGT-----KPNEVSIASVLPACSQLGALDIGKRI-EA 239

Query: 228 MLERDTFSWNTMISGYIHVL-----DMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLE 281
               + F  N  +S  +  L     ++EEA  +F ++     L +WN M+ G A  G   
Sbjct: 240 YARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGR-- 297

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
             +D                            A++L+ QM +   +PD  TF  +L   +
Sbjct: 298 -CID----------------------------ALQLYDQMLIRKMRPDDVTFVGLLLACT 328

Query: 342 GIVDLHLGMQIHQ-MVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
               +  G Q+ + M +K  V P +     L+ +  R G + EA  + + M +  + V W
Sbjct: 329 HGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIW 388

Query: 400 NAMIGGCASHG 410
             ++G C+ HG
Sbjct: 389 GTLLGACSFHG 399



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 5/183 (2%)

Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
           +V  +N  I   +S G       L+  M S    P   +F  +  ACA    V  G Q  
Sbjct: 46  SVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPG-QML 104

Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
            S   + G    +    +L+D+  + G L  A  L   MP   D   W +L+       +
Sbjct: 105 HSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVR-DIPTWNSLIAGYARSGH 163

Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           +E    A E   K+   N   +  L + YA  G++  A E+ + +++    KP   S   
Sbjct: 164 ME---AALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIAS 220

Query: 575 FSP 577
             P
Sbjct: 221 VLP 223


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 193/632 (30%), Positives = 319/632 (50%), Gaps = 82/632 (12%)

Query: 3   SGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM------- 55
           S Y K   +  ARK+FDE P  +V  WN  +  Y   +     EE   LF +M       
Sbjct: 44  SLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQ---WEETLRLFHLMICTAGEA 100

Query: 56  PER----------------------------------DCVTWNTVISGYAKTGEMEEALR 81
           P+                                   D    + ++  Y+K G+M EAL+
Sbjct: 101 PDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALK 160

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS--ALVSGLIQNGELD 139
           +F      + V W +M++G+ QN D   A+  F +M   D   L    LVS +    +L 
Sbjct: 161 VFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQL- 219

Query: 140 EAARVLVKCGSRCDGGEDLVRAY-------NTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
               + VK GS C  G  + R +       N+L+  Y + G  + A  LF K+P      
Sbjct: 220 ----LNVKAGS-CVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMP------ 268

Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLD 248
                 +++++SW++MI CYA       A  +F +M+E+    ++ +  + +       +
Sbjct: 269 ------EKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRN 322

Query: 249 MEEASNLFV----KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
           +EE   +      K    D     A++  Y +    + A+D F+R+P+K++VSW ++++G
Sbjct: 323 LEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSG 382

Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PD 363
              N     ++ +F  M  +G +PD      IL+ SS +      + +H  V ++    +
Sbjct: 383 YAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSN 442

Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM- 422
           V +  +LI +Y++CG++ +A  +F+ M ++++VV W++MI     HG   EALE+F  M 
Sbjct: 443 VFVGASLIELYSKCGSLGDAVKLFKGM-IVRDVVIWSSMIAAYGIHGRGGEALEIFDQMV 501

Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
           ++  V P  +TF+S+LSAC+HAGLVEEG + F  MV++Y + P  EHF  +VD++GR G+
Sbjct: 502 KNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQ 561

Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
           L  AMD+I  MP      VWGALLGACR+H+N+E+ + AA+ L  ++P ++  Y+LL N+
Sbjct: 562 LGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNI 621

Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           YA  G+WD+  E+R  +K   +KK  G S V+
Sbjct: 622 YAVDGKWDNVAELRTRIKERGLKKMFGQSMVE 653



 Score =  252 bits (643), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 141/425 (33%), Positives = 234/425 (55%), Gaps = 22/425 (5%)

Query: 160  RAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVV 219
            R      + Y    R++ A  +F+ IP  C               WN MI  +A  G  +
Sbjct: 753  RILTKFAIMYVSFNRIDAASIVFEDIPNPCS------------FLWNVMIRGFATDGRFL 800

Query: 220  SAREIFEQMLER----DTFSWNTMISGYIHVLDMEEA----SNLFVKMPHPDTLTWNAMV 271
            S+ E++ +M+E+    D F++   +     + D++       +L       D     A+V
Sbjct: 801  SSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALV 860

Query: 272  SGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
              YA+ G++E A   F +M  ++LVSW SMI+G   N      +  F  M+  G  P+R 
Sbjct: 861  DMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRV 920

Query: 332  TFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEM 390
            +  S+L     +  L  G   H  V +T    D+ +  A++ MY++CG++  AR +F+E 
Sbjct: 921  SILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDET 980

Query: 391  KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
               K++V W+AMI     HG   +A++LF  M    V P+++TF  VLSAC+H+GL+EEG
Sbjct: 981  AG-KDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEG 1039

Query: 451  RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
            + +F+ M  E+ I  ++ ++A +VD++GR G+L +A+DLI+ MP EPD ++WG+LLGACR
Sbjct: 1040 KMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACR 1099

Query: 511  VHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGY 570
            +HNN++LA+  A+ L  ++P ++  +VLL N+YA   RW++  +VR +M      K  G+
Sbjct: 1100 IHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGF 1159

Query: 571  SWVDF 575
            S V++
Sbjct: 1160 SLVEY 1164



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 143/293 (48%), Gaps = 35/293 (11%)

Query: 223  EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
            +IF   L+ D+         Y+    ++ AS +F  +P+P +  WN M+ G+A  G    
Sbjct: 742  KIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLS 801

Query: 283  ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
            +L+ + +M +K L                               KPD+  F   L   +G
Sbjct: 802  SLELYSKMMEKGL-------------------------------KPDKFAFPFALKSCAG 830

Query: 343  IVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
            + DL  G  IHQ +V      D+ ++ AL+ MYA+CG I  AR++F++M  ++++VSW +
Sbjct: 831  LSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMA-VRDLVSWTS 889

Query: 402  MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
            MI G A +G+ +E L  F  MRS  V+P  ++ +SVL AC + G + +G + F S V + 
Sbjct: 890  MISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKG-EWFHSYVIQT 948

Query: 462  GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
            G E  I    +++D+  + G L+ A  L      + D   W A++ +  +H +
Sbjct: 949  GFEFDILVATAIMDMYSKCGSLDLARCLFDETAGK-DLVCWSAMIASYGIHGH 1000



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 114/475 (24%), Positives = 195/475 (41%), Gaps = 94/475 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K  +M +A K+F+E  + D V W  M++GY  +      EEA  LF  M   DC
Sbjct: 145 LVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDP---EEALALFSQMVMMDC 201

Query: 61  VTW----------------------------------------NTVISGYAKTGEMEEAL 80
           V                                          N++++ YAKTG  + A 
Sbjct: 202 VVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAA 261

Query: 81  RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNG 136
            LF+ MP ++V+SW+ MI+ +  N     A+  F  M  +    +S ++ + +     + 
Sbjct: 262 NLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSR 321

Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196
            L+E  ++      +  G E        LI  Y +    +EA  LF ++P          
Sbjct: 322 NLEEGKKIHKIAVWK--GFELDFSVSTALIDMYMKCSCPDEAVDLFQRLP---------- 369

Query: 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML-------------------ERDTFSWN 237
             K+++VSW +++  YA+ G    +  +F  ML                   E   F   
Sbjct: 370 --KKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQA 427

Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
             + GY  V+     SN+FV           +++  Y++ G+L  A+  FK M  +++V 
Sbjct: 428 LCLHGY--VVRSGFNSNVFVGA---------SLIELYSKCGSLGDAVKLFKGMIVRDVVI 476

Query: 298 WNSMIAGCETNKDYEGAIKLFIQM-QVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQ 354
           W+SMIA    +     A+++F QM +    +P+  TF SILS  S  G+V+  L +    
Sbjct: 477 WSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRM 536

Query: 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           +    + PD      ++ +  R G + +A  I   M +      W A++G C  H
Sbjct: 537 VHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIH 591



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 150/361 (41%), Gaps = 61/361 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG------------------- 41
           +++ Y K      A  LF +MP++DV+SW+ MI+ Y ++                     
Sbjct: 247 LLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPN 306

Query: 42  -------------SGFLEEARYLFDIMP----ERDCVTWNTVISGYAKTGEMEEALRLFN 84
                        S  LEE + +  I      E D      +I  Y K    +EA+ LF 
Sbjct: 307 SVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQ 366

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-SASLSALVSGLIQNGELDEAAR 143
            +P ++VVSW A++SG+ QNG    ++  F  M          A+V  L  + EL    +
Sbjct: 367 RLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQ 426

Query: 144 VLVKCGSRCDGG-EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
            L   G     G    V    +LI  Y + G + +A KLF  + V            R++
Sbjct: 427 ALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIV------------RDV 474

Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN-----TMISGYIHVLDMEEASNLFV 257
           V W+SMI  Y   G    A EIF+QM++  T   N     +++S   H   +EE   +F 
Sbjct: 475 VIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFD 534

Query: 258 KMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDY 311
           +M H     PD+  +  MV    +IG L  A+D   RMP       W +++  C  + + 
Sbjct: 535 RMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNI 594

Query: 312 E 312
           E
Sbjct: 595 E 595



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 151/364 (41%), Gaps = 48/364 (13%)

Query: 70   YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PG---- 119
            Y     ++ A  +F  +P      WN MI GF  +G   +++E + +M      P     
Sbjct: 762  YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAF 821

Query: 120  ----RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175
                +  A LS L  G + +         LV CG   D   D       L+  Y + G +
Sbjct: 822  PFALKSCAGLSDLQRGKVIHQH-------LVCCGCSNDLFVD-----AALVDMYAKCGDI 869

Query: 176  EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----- 230
            E AR +FDK+ V            R++VSW SMI  YA  G        F+ M       
Sbjct: 870  EAARLVFDKMAV------------RDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIP 917

Query: 231  -RDTFSWNTMISGYIHVLDMEEASNLFVKMP--HPDTLTWNAMVSGYAQIGNLELALDFF 287
             R +     +  G +  L   E  + +V       D L   A++  Y++ G+L+LA   F
Sbjct: 918  NRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLF 977

Query: 288  KRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
                 K+LV W++MIA    +     AI LF QM   G +P   TF+ +LS  S    L 
Sbjct: 978  DETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLE 1037

Query: 348  LGMQIHQMVTKTVIPDVPINN--ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGG 405
             G    Q++T+  +    ++N   ++ +  R G + EA  + E M +  +   W +++G 
Sbjct: 1038 EGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGA 1097

Query: 406  CASH 409
            C  H
Sbjct: 1098 CRIH 1101



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 125/267 (46%), Gaps = 13/267 (4%)

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF-IQM 321
           DT     + S YA+  +L+ A   F   P  N+  WNS +      K +E  ++LF + +
Sbjct: 35  DTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMI 94

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGA 379
              GE PD  T    L   +G+  L LG  IH    K   +  D+ + +AL+ +Y++CG 
Sbjct: 95  CTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQ 154

Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK-VLPTYITFISVL 438
           + EA  +FEE +   + V W +M+ G   +    EAL LF  M     V+   +T +SV+
Sbjct: 155 MGEALKVFEEFQ-RPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVV 213

Query: 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD 498
           SACA    V+ G      +V     +  +    SL+++  + G  + A +L   MP E D
Sbjct: 214 SACAQLLNVKAG-SCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMP-EKD 271

Query: 499 KAVWGALLGACRVHNNVELAQVAAEAL 525
              W  ++ AC  +N     + A EAL
Sbjct: 272 VISWSTMI-ACYANN-----EAANEAL 292



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 150/372 (40%), Gaps = 82/372 (22%)

Query: 5    YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER------ 58
            YV    +  A  +F+++P      WNVMI G+ +    G    +  L+  M E+      
Sbjct: 762  YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD---GRFLSSLELYSKMMEKGLKPDK 818

Query: 59   ---------------------------------DCVTWNTVISGYAKTGEMEEALRLFNS 85
                                             D      ++  YAK G++E A  +F+ 
Sbjct: 819  FAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDK 878

Query: 86   MPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVS----GLIQN 135
            M  R++VSW +MISG+  NG  +  + FFD M      P R S  LS L++    G ++ 
Sbjct: 879  MAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSI-LSVLLACGNLGALRK 937

Query: 136  GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
            GE   +   +++ G   D     +     ++  Y + G ++ AR LFD+           
Sbjct: 938  GEWFHS--YVIQTGFEFD-----ILVATAIMDMYSKCGSLDLARCLFDETA--------- 981

Query: 196  VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT----FSWNTMISGYIHVLDMEE 251
                +++V W++MI  Y   G    A ++F+QM++        ++  ++S   H   +EE
Sbjct: 982  ---GKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEE 1038

Query: 252  ASNLFVKMPHPDTLT-----WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGC 305
                F  M     +      +  MV    + G L  A+D  + MP + +   W S++  C
Sbjct: 1039 GKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGAC 1098

Query: 306  ETNKDYEGAIKL 317
              + + + A K+
Sbjct: 1099 RIHNNLDLAEKI 1110



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 57/238 (23%)

Query: 1    MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
            ++  Y K  ++  AR +FD+M  RD+VSW  MISGY     +G+  E    FD+M     
Sbjct: 859  LVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAH---NGYNSETLGFFDLMRSSGV 915

Query: 56   -PER---------------------------------DCVTWNTVISGYAKTGEMEEALR 81
             P R                                 D +    ++  Y+K G ++ A  
Sbjct: 916  IPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARC 975

Query: 82   LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
            LF+    +++V W+AMI+ +  +G    AI+ FD+M          + + ++S    +G 
Sbjct: 976  LFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGL 1035

Query: 138  LDEAARVLVKCGSRCDGGEDLVRA-----YNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
            L+E               E+ V A     Y  ++   G+ G++ EA  L + +PV  D
Sbjct: 1036 LEEGKMYFQLM------TEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPD 1087



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 8/172 (4%)

Query: 351 QIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
           Q+H  V KT ++ D      L ++YA+C ++  AR +F+E     NV  WN+ +      
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETP-HPNVHLWNSTLRSYCRE 80

Query: 410 GFATEALELFKSM-RSFKVLPTYITFISVLSACAHAGLVEEGR--QHFKSMVNEYGIEPR 466
               E L LF  M  +    P   T    L ACA   ++E G+    F    +E G +  
Sbjct: 81  KQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMF 140

Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
           +   ++LV++  + G++ +A+ + +     PD  +W +++   + +N+ E A
Sbjct: 141 VG--SALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTGYQQNNDPEEA 189


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 175/551 (31%), Positives = 299/551 (54%), Gaps = 42/551 (7%)

Query: 45  LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
           L  A  +F+ + E + + WNT+  G+A + +   AL L+  M +  ++         L++
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 112

Query: 105 GDVANAIEFFDRMPGR--------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
              + A     ++ G         D    ++L+S  +QNG L++A +V  +   R     
Sbjct: 113 CAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR----- 167

Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
           D+V +Y  LI GY  +G +  A+K+FD+IP+            +++VSWN+MI  YA+ G
Sbjct: 168 DVV-SYTALITGYASKGYIASAQKMFDEIPI------------KDVVSWNAMISGYAETG 214

Query: 217 DVVSAREIFEQMLERDTF-SWNTMISGYIHVLDMEEASNLFVKMPHP---------DTLT 266
           +   A E+F++M++ +     +TM+S  +     + AS    +  H          +   
Sbjct: 215 NNKEALELFKEMMKTNVRPDESTMVS--VVSACAQSASIELGRQVHSWIDDHGFGSNLKI 272

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
            NA++  Y + G +E A   F+ +  K+++SWN++I G      Y+ A+ LF +M   GE
Sbjct: 273 VNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 332

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT---VIPDVPINNALITMYARCGAIVEA 383
            P+  T  SIL   + +  + +G  IH  + K    V        +LI MYA+CG I  A
Sbjct: 333 SPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAA 392

Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
           + +F+ + L +++ SWNAMI G A HG A  A ++F  MR  ++ P  ITF+ +LSAC+H
Sbjct: 393 QQVFDSI-LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSH 451

Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
           +G+++ GR  F+SM  +Y I P++EH+  ++D++G  G  ++A ++I  M  EPD  +W 
Sbjct: 452 SGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWC 511

Query: 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563
           +LL AC+++ NVEL +  A+ L+K+EP+N   YVLL N+YA  GRW++  ++R L+    
Sbjct: 512 SLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKG 571

Query: 564 IKKPTGYSWVD 574
           +KK  G S ++
Sbjct: 572 MKKVPGCSSIE 582



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 184/425 (43%), Gaps = 87/425 (20%)

Query: 25  DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
           D+     +IS Y+ +   G LE+AR +FD    RD V++  +I+GYA  G +  A ++F+
Sbjct: 137 DLYVHTSLISMYVQN---GRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFD 193

Query: 85  SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
            +P ++VVSWNAMISG+ + G+   A+E F  M              +  N   DE+  V
Sbjct: 194 EIPIKDVVSWNAMISGYAETGNNKEALELFKEM--------------MKTNVRPDESTMV 239

Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
                              +++    Q   +E  R++   I    D G     F  N+  
Sbjct: 240 -------------------SVVSACAQSASIELGRQVHSWID---DHG-----FGSNLKI 272

Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----P 260
            N++I  Y K G+V +A  +FE +  +D  SWNT+I GY H+   +EA  LF +M     
Sbjct: 273 VNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 332

Query: 261 HPDTLT------------------W-------------------NAMVSGYAQIGNLELA 283
            P+ +T                  W                    +++  YA+ G++E A
Sbjct: 333 SPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAA 392

Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
              F  +  ++L SWN+MI G   +     A  +F +M+    +PD  TF  +LS  S  
Sbjct: 393 QQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 452

Query: 344 VDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
             L LG  I + + +   + P +     +I +    G   EA  +   M++  + V W +
Sbjct: 453 GMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCS 512

Query: 402 MIGGC 406
           ++  C
Sbjct: 513 LLKAC 517



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 164/350 (46%), Gaps = 29/350 (8%)

Query: 220 SAREIFEQMLERDTFSWNTMISGYI-------HVLDMEEASNLFVKMPHPDTLTWNAMVS 272
           S R I  QM++    + N  +S  I       H   +  A ++F  +  P+ L WN M  
Sbjct: 17  SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 76

Query: 273 GYAQIGNLELALDFFKRMPQ----KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
           G+A   +   AL  +  M       N  ++  ++  C  +K +    ++   +   G   
Sbjct: 77  GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 136

Query: 329 DRHTFSSILSM--SSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARII 386
           D +  +S++SM   +G ++        ++  ++   DV    ALIT YA  G I  A+ +
Sbjct: 137 DLYVHTSLISMYVQNGRLE-----DARKVFDQSSHRDVVSYTALITGYASKGYIASAQKM 191

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
           F+E+  +K+VVSWNAMI G A  G   EALELFK M    V P   T +SV+SACA +  
Sbjct: 192 FDEIP-IKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSAS 250

Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
           +E GRQ   S ++++G    ++   +L+D+  + G +E A  L +G+ ++ D   W  L+
Sbjct: 251 IELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVISWNTLI 308

Query: 507 GACRVHNNV--ELAQVAAEALMKVEPENSTPYVLLYNMYA-----DVGRW 549
           G    H N+  E   +  E L   E  N    + +    A     ++GRW
Sbjct: 309 GG-YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRW 357



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/427 (23%), Positives = 176/427 (41%), Gaps = 95/427 (22%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
           +I+GY  +  +A A+K+FDE+P +DVVSWN MISGY     +G  +EA  LF      ++
Sbjct: 175 LITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAE---TGNNKEALELFKEMMKTNV 231

Query: 55  MPE--------------------RDCVTW-------------NTVISGYAKTGEMEEALR 81
            P+                    R   +W             N +I  Y K GE+E A  
Sbjct: 232 RPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACG 291

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGE 137
           LF  +  ++V+SWN +I G+        A+  F  M       +  ++ +++      G 
Sbjct: 292 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGA 351

Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
           ++    + V    R  G  +      +LI  Y + G +E A+++FD I            
Sbjct: 352 IEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSI------------ 399

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
             R++ SWN+MI  +A  G   +A +IF +M + +                         
Sbjct: 400 LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI------------------------ 435

Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-----NLVSWNSMIAGCETNKDYE 312
               PD +T+  ++S  +  G L+L    F+ M +       L  +  MI     +  ++
Sbjct: 436 ---EPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFK 492

Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALIT 372
            A ++   M++E   PD   + S+L       ++ LG    Q + K + P  P +  L++
Sbjct: 493 EAEEMINTMEME---PDGVIWCSLLKACKMYANVELGESYAQNLIK-IEPKNPGSYVLLS 548

Query: 373 -MYARCG 378
            +YA  G
Sbjct: 549 NIYATAG 555


>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
          Length = 545

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 146/375 (38%), Positives = 232/375 (61%), Gaps = 6/375 (1%)

Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
           N++I  +A  G++  A  +F+     D  +W+ MI+G     D+  A +LF + P  D +
Sbjct: 151 NALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLV 210

Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
           +WN M++ YA+ G++ LA + F ++P++++VSWN MI+G      +  A++LF QMQ  G
Sbjct: 211 SWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMG 270

Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQ----MVTKTVIPDVPINNALITMYARCGAIV 381
           EKPD  T  S+LS  +   DL +G ++H     M ++   P V + NALI MYA+CG++ 
Sbjct: 271 EKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFP-VVLGNALIDMYAKCGSMK 329

Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
            A  +F  M+  K+V +WN+++GG A HG   E++++F+ M   KV P  ITF++VL AC
Sbjct: 330 SAHEVFWSMRD-KDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIAC 388

Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
           +H G+V++GR+ F  M ++Y +EP I+H+  +VD++GR G L++A + I  M  EP+  +
Sbjct: 389 SHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVI 448

Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
           W  LL ACRVH  +ELA+ A   L+K   + S  YVLL N+YA VG W  + ++R LM  
Sbjct: 449 WRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDD 508

Query: 562 NNIKKPTGYSWVDFS 576
           + + K  G ++VD S
Sbjct: 509 SGVNKEAGQTFVDGS 523



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 149/303 (49%), Gaps = 60/303 (19%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
           A  LFD   + D V+W+ MI+G  + RG   +  AR LFD  P +D V+WN +I+ YAK 
Sbjct: 166 AAALFDGRAREDAVAWSAMITG-CARRGD--IGAARDLFDECPVKDLVSWNVMITAYAKR 222

Query: 74  GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALV 129
           G+M  A  LF+ +P R+VVSWN MISG+++ G   +A+E F++M       D  ++ +L+
Sbjct: 223 GDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLL 282

Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
           S    +G+LD   R+                 +++L   + + G            PV  
Sbjct: 283 SACADSGDLDVGQRL-----------------HSSLSDMFSRNG-----------FPV-- 312

Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG---YIHV 246
                        V  N++I  YAK G + SA E+F  M ++D  +WN+++ G   + HV
Sbjct: 313 -------------VLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHV 359

Query: 247 LDMEEASNLFVKM----PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
           L   E+ ++F KM      PD +T+ A++   +  G ++   +FF  M  K  V  N   
Sbjct: 360 L---ESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKH 416

Query: 303 AGC 305
            GC
Sbjct: 417 YGC 419



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 147/323 (45%), Gaps = 54/323 (16%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           MI+G  +R ++  AR LFDE P +D+VSWNVMI+ Y + RG   L  AR LFD +PERD 
Sbjct: 184 MITGCARRGDIGAARDLFDECPVKDLVSWNVMITAY-AKRGDMAL--ARELFDQVPERDV 240

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
           V+WN +ISGY + G    AL LF  M                             RM  +
Sbjct: 241 VSWNVMISGYVRCGSHLHALELFEQM----------------------------QRMGEK 272

Query: 121 -DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
            D  ++ +L+S    +G+LD   R+              V   N LI  Y + G ++ A 
Sbjct: 273 PDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAH 332

Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFS 235
           ++F  +              +++ +WNS++   A  G V+ + ++FE+ML+     D  +
Sbjct: 333 EVFWSMR------------DKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEIT 380

Query: 236 WNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRM 290
           +  ++    H   +++    F  M H     P+   +  MV    + G L+ A +F   M
Sbjct: 381 FVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTM 440

Query: 291 P-QKNLVSWNSMIAGCETNKDYE 312
             + N V W ++++ C  + + E
Sbjct: 441 KCEPNSVIWRTLLSACRVHGEIE 463


>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
 gi|219884683|gb|ACL52716.1| unknown [Zea mays]
 gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
          Length = 601

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 287/546 (52%), Gaps = 38/546 (6%)

Query: 48  ARYLFDIMPERD---CVTWNTVISGYAKTGEMEEAL----RLFNSMPARNV--VSWNAMI 98
           AR+LFD +P      C  + +V+S  +   E+ EA+    R   ++P+  +  V  +  +
Sbjct: 31  ARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCAL 90

Query: 99  SGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
           S     G   +       M G D    +ALV    +NG +D A     +   +     D 
Sbjct: 91  SAASCQGTQTHCHALVRGMLG-DVFVQTALVDFYAKNGNMDSAVMAFEEMPIK-----DP 144

Query: 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV 218
           +   N LI GY + G VEEAR+LFD +P            ++   SWNSMI CYA  G+ 
Sbjct: 145 I-PMNCLITGYSRSGDVEEARRLFDSMP------------RKTSASWNSMIACYAHGGEF 191

Query: 219 VSAREIFEQMLER----DTFSWNTMISGYIHVLDMEEASNLFVKMPHPD---TLTWNAMV 271
             A  +F+QML      +  +  T+ S      D+E        +   D    +   A++
Sbjct: 192 QEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALM 251

Query: 272 SGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
             Y +   ++ A   F RMP++++V+W++MIAG   N     +++LF +M+    KP+  
Sbjct: 252 EMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEV 311

Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEM 390
           T   +LS  + +    LG QI   +    +P    + +ALI MY +CG +  AR +F  M
Sbjct: 312 TLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRM 371

Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
           +  K V++WN+MI G A +GFA +A+ L+  M    V P  ITF+++L+AC HAGLV++G
Sbjct: 372 EQ-KVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKG 430

Query: 451 RQHFKSMV-NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
              F+ M  N+    P++EH A +VD++ + GRL +A   I  M  EP+  +W  LL AC
Sbjct: 431 MAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSAC 490

Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
           R H +VELA++AA  L+ +EP +S+ YVLL N+YAD G W D  E+R LM+S N++K + 
Sbjct: 491 RAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSA 550

Query: 570 YSWVDF 575
           YSW++ 
Sbjct: 551 YSWIEL 556



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 190/388 (48%), Gaps = 38/388 (9%)

Query: 42  SGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
           +G ++ A   F+ MP +D +  N +I+GY+++G++EEA RLF+SMP +   SWN+MI+ +
Sbjct: 126 NGNMDSAVMAFEEMPIKDPIPMNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACY 185

Query: 102 LQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGED 157
              G+   A+  FD+M       ++ +++ + S   + G+L+   R            ED
Sbjct: 186 AHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSE-----ED 240

Query: 158 L--VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
           L  V  +  L+  Y +   ++EAR+ FD++P            +R++V+W++MI  Y+  
Sbjct: 241 LQNVIVHTALMEMYVKCRAIDEARREFDRMP------------RRDVVAWSTMIAGYSHN 288

Query: 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHV---LDMEEASNLFVKMPHPDTLTW----- 267
           G    + E+FE+M   +       + G +     L  +E            TL       
Sbjct: 289 GRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLG 348

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           +A++  Y + G++  A D F RM QK +++WNSMI G   N   E AI L+ +M  +G +
Sbjct: 349 SALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQ 408

Query: 328 PDRHTFSSILSMSS--GIVDLHLGMQIHQMVTKT---VIPDVPINNALITMYARCGAIVE 382
           P+  TF ++L+  +  G+VD   GM   Q + K      P V     ++ +  + G + E
Sbjct: 409 PNEITFLALLTACTHAGLVD--KGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWE 466

Query: 383 ARIIFEEMKLLKNVVSWNAMIGGCASHG 410
           A     +M++  N V W  ++  C +H 
Sbjct: 467 AYKFICDMEVEPNAVIWTTLLSACRAHA 494



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 186/395 (47%), Gaps = 60/395 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
           ++  Y K   M  A   F+EMP +D +  N +I+GY  SR SG +EEAR LFD MP +  
Sbjct: 119 LVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLITGY--SR-SGDVEEARRLFDSMPRKTS 175

Query: 61  VTWNTVISGYAKTGEMEEALRLFNSM----PARNVVSWNAMISGFLQNGDVANAIEFFDR 116
            +WN++I+ YA  GE +EAL LF+ M     + N ++   + S   + GD+         
Sbjct: 176 ASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAW 235

Query: 117 MPGRDSASL---SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
           +   D  ++   +AL+   ++   +DEA R   +   R     D+V A++T+I GY   G
Sbjct: 236 VSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRMPRR-----DVV-AWSTMIAGYSHNG 289

Query: 174 RVEEARKLFDKI-PVNCDRGE-------------GNVRFKRNIVSW-------------N 206
           R  E+ +LF+++   NC   E             G+      I S+             +
Sbjct: 290 RPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGS 349

Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHP 262
           ++I  Y K G V  AR++F +M ++   +WN+MI G       E+A  L+ +M      P
Sbjct: 350 ALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQP 409

Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG--------CETNKDYEGA 314
           + +T+ A+++     G ++  + FF+ M +KN    +  +          C++ + +E A
Sbjct: 410 NEITFLALLTACTHAGLVDKGMAFFQEM-KKNKQHASPQVEHCACIVDLLCKSGRLWE-A 467

Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
            K    M+VE   P+   ++++LS      D+ L 
Sbjct: 468 YKFICDMEVE---PNAVIWTTLLSACRAHADVELA 499


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 202/630 (32%), Positives = 317/630 (50%), Gaps = 79/630 (12%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
           M+S  V+  E   A ++F +MP+RDV SWNVM+ GY     +G LEEA  L+  M     
Sbjct: 135 MLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGY---GKAGLLEEALDLYHRMMWAGV 191

Query: 56  -PE--------RDC---VTW----------------------NTVISGYAKTGEMEEALR 81
            P+        R C     W                      N +++ YAK G++  A +
Sbjct: 192 RPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARK 251

Query: 82  LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSALVSGLIQN 135
           +F+SM   + +SWNAMI+G  +NG+    +E F  M      P   + +   + SGL+ +
Sbjct: 252 VFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSD 311

Query: 136 GEL-DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
                E   + VK G   D     V   N+LI  Y   G + +AR +F ++         
Sbjct: 312 ITFAKEMHGLAVKRGFATD-----VAFCNSLIQMYASLGMMGQARTVFSRMDT------- 359

Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASN 254
                R+ +SW +MI  Y K G    A E++  M   +    +  I+  +       + +
Sbjct: 360 -----RDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLD 414

Query: 255 LFVKMPH--------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG-C 305
           + VK+             +  NA++  YA+   ++ A++ FK MP+K++VSW+SMIAG C
Sbjct: 415 VGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFC 474

Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DV 364
             ++++E A+  F  M  +  KP+  TF + L+  +    L  G +IH  V +  I  + 
Sbjct: 475 FNHRNFE-ALYYFRHMLAD-VKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEG 532

Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
            + NALI +Y +CG    A   F      K+VVSWN MI G  +HG    AL  F  M  
Sbjct: 533 YLPNALIDLYVKCGQTGYAWAQFCAHG-AKDVVSWNIMIAGFVAHGNGETALSFFNQMVK 591

Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
               P  +TF+++L AC+  G+V EG + F SM ++Y I P ++H+A +VD++ R G+L 
Sbjct: 592 IGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLT 651

Query: 485 DAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
           +A + I  MP  PD AVWGALL  CR+H +VEL ++AA+ ++++EP ++  +VLL ++YA
Sbjct: 652 EAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLCDLYA 711

Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
           D G WD    VR  M+   +   +G SWV+
Sbjct: 712 DAGIWDKLARVRKTMREKGLDHDSGCSWVE 741



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 192/395 (48%), Gaps = 49/395 (12%)

Query: 64  NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
           N ++S   + GE   A R+F  MP R+V SWN M+ G+ + G +  A++ + RM      
Sbjct: 133 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRM------ 186

Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCD--------------GGEDLVRAYNTLIVGY 169
               + +G+    ++     VL  CG   D              G  + V   N L+  Y
Sbjct: 187 ----MWAGV--RPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMY 240

Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
            + G V  ARK+FD + V             + +SWN+MI  + + G+  +  E+F  ML
Sbjct: 241 AKCGDVVAARKVFDSMAV------------MDCISWNAMIAGHFENGECNAGLELFLTML 288

Query: 230 ERD------TFSWNTMISGYIHVLDM-EEASNLFVKMPHP-DTLTWNAMVSGYAQIGNLE 281
           + +      T +  T+ SG +  +   +E   L VK     D    N+++  YA +G + 
Sbjct: 289 QDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMG 348

Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
            A   F RM  ++ +SW +MI+G E N   + A++++  M+V    PD  T +S L+  +
Sbjct: 349 QARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACA 408

Query: 342 GIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
            +  L +G+++H++  +K  +  V + NAL+ MYA+   I +A  +F+ M   K+VVSW+
Sbjct: 409 CLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMP-EKDVVSWS 467

Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
           +MI G   +    EAL  F+ M +  V P  +TFI
Sbjct: 468 SMIAGFCFNHRNFEALYYFRHMLA-DVKPNSVTFI 501



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 97/174 (55%), Gaps = 2/174 (1%)

Query: 268 NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK 327
           NAM+S   + G    A   F +MP++++ SWN M+ G       E A+ L+ +M   G +
Sbjct: 133 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVR 192

Query: 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARII 386
           PD +TF  +L    G+ D  +G ++H  V +     +V + NAL+TMYA+CG +V AR +
Sbjct: 193 PDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKV 252

Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
           F+ M ++ + +SWNAMI G   +G     LELF +M   +V P  +T  SV  A
Sbjct: 253 FDSMAVM-DCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVA 305


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 196/614 (31%), Positives = 316/614 (51%), Gaps = 75/614 (12%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISSRGSGFL--------------EEARYLFDIMPERD 59
           AR LF  +P+ D+  +NV+I G+  S  +  +              +   Y F I    D
Sbjct: 59  ARALFFSVPKPDIFLFNVLIKGFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPD 118

Query: 60  -----CVTWNTVISG--------------YAKTGEMEEALRLFNSMPARNVVSWNAMISG 100
                C+  + V+ G              Y K   +  A ++F+ MP R+ V WN MI+G
Sbjct: 119 DNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITG 178

Query: 101 FLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARV---LVKCGSRCD 153
            ++N    ++++ F  M  +    DS +++ ++  + +  E+     +    +K G   D
Sbjct: 179 LVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFD 238

Query: 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
              D V     LI  + +   V+ AR LF           G +R K ++VS+N++I  ++
Sbjct: 239 ---DYV--LTGLISVFSKCEDVDTARLLF-----------GMIR-KPDLVSYNALISGFS 281

Query: 214 KAGDVVSAREIFEQML-ERDTFSWNTMIS--------GYIHVLDMEEASNLFVK---MPH 261
             G+   A + F ++L      S +TM+         G++H+    +     VK   +  
Sbjct: 282 CNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQG--FCVKSGTILQ 339

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
           P   T  A+ + Y+++  ++LA   F    +K + +WN+MI+G   +   E AI LF +M
Sbjct: 340 PSVST--ALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEM 397

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV-TKTVIPDVPINNALITMYARCGAI 380
                 P+  T +SILS  + +  L  G  +HQ++ +K +  ++ ++ ALI MYA+CG I
Sbjct: 398 MTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNI 457

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
            EA  +F+ +   KN V+WN MI G   HG+  EAL+LF  M      P+ +TF+SVL A
Sbjct: 458 SEASQLFD-LTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYA 516

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C+HAGLV EG + F +MVN+Y IEP  EH+A +VDI+GR G+LE A++ I+ MP EP  A
Sbjct: 517 CSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPA 576

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
           VWG LLGAC +H +  LA+VA+E L +++P N   YVLL N+Y+    +  A  VR  +K
Sbjct: 577 VWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVK 636

Query: 561 SNNIKKPTGYSWVD 574
             N+ K  G + ++
Sbjct: 637 KRNLSKTPGCTLIE 650



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 116/465 (24%), Positives = 212/465 (45%), Gaps = 25/465 (5%)

Query: 57  ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
           + D  T   +       G    A  LF S+P  ++  +N +I GF  + D A++I F+  
Sbjct: 37  QHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSPD-ASSISFYTH 95

Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
           +    + S          +   D+   + +   +  DG +  +   + L+  Y +  RV 
Sbjct: 96  LLKNTTLSPDNFTYAFAISASPDDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVA 155

Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
            ARK+FDK+P             R+ V WN+MI    +      + ++F+ M+ +     
Sbjct: 156 YARKVFDKMP------------DRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLD 203

Query: 237 NTMISGYI-HVLDMEEA------SNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFK 288
           +T ++  +  V +M+E         L +K+  H D      ++S +++  +++ A   F 
Sbjct: 204 STTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFG 263

Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
            + + +LVS+N++I+G   N + E A+K F ++ V G++    T   ++ +SS    LHL
Sbjct: 264 MIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHL 323

Query: 349 GMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
              I     K+  I    ++ AL T+Y+R   I  AR +F+E    K V +WNAMI G A
Sbjct: 324 ACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESS-EKTVAAWNAMISGYA 382

Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
             G    A+ LF+ M + +  P  +T  S+LSACA  G +  G+     ++    +E  I
Sbjct: 383 QSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKS-VHQLIKSKNLEQNI 441

Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
               +L+D+  + G + +A  L   +  E +   W  ++    +H
Sbjct: 442 YVSTALIDMYAKCGNISEASQLFD-LTSEKNTVTWNTMIFGYGLH 485



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 129/493 (26%), Positives = 212/493 (43%), Gaps = 74/493 (15%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--- 57
           ++  Y K   +A ARK+FD+MP RD V WN MI+G +  R   + +  +   D++ +   
Sbjct: 144 LVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLV--RNCCYDDSVQVFKDMVAQGVR 201

Query: 58  RDCVTWNTV-----------------------------------ISGYAKTGEMEEALRL 82
            D  T  TV                                   IS ++K  +++ A  L
Sbjct: 202 LDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLL 261

Query: 83  FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI----QNGEL 138
           F  +   ++VS+NA+ISGF  NG+   A+++F  +        S+ + GLI      G L
Sbjct: 262 FGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHL 321

Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNT-LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
             A  +   C      G  L  + +T L   Y +   ++ AR+LFD+             
Sbjct: 322 HLACCIQGFC---VKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESS----------- 367

Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
            ++ + +WN+MI  YA++G    A  +F++M+  + F+ N +    I     +  +  F 
Sbjct: 368 -EKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTE-FTPNPVTITSILSACAQLGALSFG 425

Query: 258 KMPH----PDTLTWNAMVSG-----YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
           K  H       L  N  VS      YA+ GN+  A   F    +KN V+WN+MI G   +
Sbjct: 426 KSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLH 485

Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI-HQMVTKTVIPDVPIN 367
              + A+KLF +M   G +P   TF S+L   S    +  G +I H MV K  I  +  +
Sbjct: 486 GYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEH 545

Query: 368 NA-LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426
            A ++ +  R G + +A     +M +      W  ++G C  H      L    S R F+
Sbjct: 546 YACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIH--KDTNLARVASERLFE 603

Query: 427 VLPTYITFISVLS 439
           + P  + +  +LS
Sbjct: 604 LDPGNVGYYVLLS 616


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 155/369 (42%), Positives = 225/369 (60%), Gaps = 7/369 (1%)

Query: 212 YAKA---GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDME-EASNLFVKMPHPDT-LT 266
           YAK    G V  +R++FEQM E +  SW  +I+ Y+   + + EA  LF KM        
Sbjct: 2   YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCV 61

Query: 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
            N+++S YA+ G +E A   F  + +KNLVS+N+++ G   N   E A  LF ++   G 
Sbjct: 62  GNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI 121

Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARI 385
                TF+S+LS ++ I  +  G QIH +++      +  I NALI+MY+RCG I  A  
Sbjct: 122 GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQ 181

Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
           +F EM+  +NV+SW +MI G A HGFAT ALE+F  M      P  IT+++VLSAC+H G
Sbjct: 182 VFNEMED-RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 240

Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
           ++ EG++HF SM  E+GI PR+EH+A +VD++GR G L +AM+ I  MP   D  VW  L
Sbjct: 241 MISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTL 300

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
           LGACRVH N EL + AAE +++ EP++   Y+LL N++A  G+W D  ++R  MK  N+ 
Sbjct: 301 LGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLI 360

Query: 566 KPTGYSWVD 574
           K  G SW++
Sbjct: 361 KEAGCSWIE 369



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 180/429 (41%), Gaps = 86/429 (20%)

Query: 14  ARKLFDEMPQRDVVSWNVMISGYISS------------------------------RGSG 43
           +RK+F++MP+ +V+SW  +I+ Y+ S                                SG
Sbjct: 14  SRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCVGNSLISMYARSG 73

Query: 44  FLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQ 103
            +E+AR  FDI+ E++ V++N ++ GYAK  + EEA  LFN +                 
Sbjct: 74  RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIA---------------D 118

Query: 104 NGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN 163
            G   +A  F   + G  +AS+ A+  G   +G L +      +C              N
Sbjct: 119 TGIGISAFTFASLLSG--AASIGAMGKGEQIHGRLLKGGYKSNQC------------ICN 164

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
            LI  Y + G +E A ++F+++              RN++SW SMI  +AK G    A E
Sbjct: 165 ALISMYSRCGNIEAAFQVFNEME------------DRNVISWTSMITGFAKHGFATRALE 212

Query: 224 IFEQMLERDT----FSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGY 274
           +F +MLE  T     ++  ++S   HV  + E    F  M       P    +  MV   
Sbjct: 213 MFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLL 272

Query: 275 AQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE-GAIKLFIQMQVEGEKPDRHT 332
            + G L  A++F   MP   + + W +++  C  + + E G     + ++ E + P  + 
Sbjct: 273 GRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYI 332

Query: 333 FSSILSMSSG----IVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFE 388
             S L  S+G    +V +   M+   ++ +     + + N +   +    +  +A  I++
Sbjct: 333 LLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQ 392

Query: 389 EMKLLKNVV 397
           E+  L + +
Sbjct: 393 ELDQLASKI 401



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 111/273 (40%), Gaps = 54/273 (19%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
           +IS Y +   M  ARK FD + ++++VS+N ++ GY                        
Sbjct: 65  LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 124

Query: 37  -------------ISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
                        I + G G     R L        C+  N +IS Y++ G +E A ++F
Sbjct: 125 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCIC-NALISMYSRCGNIEAAFQVF 183

Query: 84  NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGELD 139
           N M  RNV+SW +MI+GF ++G    A+E F +M       +  +  A++S     G + 
Sbjct: 184 NEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 243

Query: 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199
           E  +       +  G    +  Y  ++   G+ G + EA +  + +P+  D         
Sbjct: 244 EGQKHF-NSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMAD--------- 293

Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
              + W +++      G+    R   E +LE++
Sbjct: 294 --ALVWRTLLGACRVHGNTELGRHAAEMILEQE 324



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 122/275 (44%), Gaps = 50/275 (18%)

Query: 270 MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI-AGCETNKDYEGAIKLFIQMQVEGEKP 328
           M +  A  G+++ +   F++MP+ N++SW ++I A  ++ +  + AI+LF +M       
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKM------- 53

Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFE 388
                   +S S   V                       N+LI+MYAR G + +AR  F 
Sbjct: 54  --------ISASVNCV----------------------GNSLISMYARSGRMEDARKAF- 82

Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
           ++   KN+VS+NA++ G A +  + EA  LF  +    +  +  TF S+LS  A  G + 
Sbjct: 83  DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 142

Query: 449 EGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV--WGAL 505
           +G Q H + +   Y     I +  +L+ +  R G +E A  +   M    D+ V  W ++
Sbjct: 143 KGEQIHGRLLKGGYKSNQCICN--ALISMYSRCGNIEAAFQVFNEM---EDRNVISWTSM 197

Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
           +     H     A  A E   K+    + P  + Y
Sbjct: 198 ITGFAKHG---FATRALEMFHKMLETGTKPNEITY 229


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 194/558 (34%), Positives = 284/558 (50%), Gaps = 59/558 (10%)

Query: 38  SSRGSGFLEEARYLFDIMPERDCVTWNTVISGYA--KTGEMEEALRLFNSMPARNVVSWN 95
           S RG   L     L  +  E   +T   +IS  A    G+++ A R+F+ +P  N   +N
Sbjct: 126 SMRGLKLLHAQIILHGLTNET--LTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYN 183

Query: 96  AMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCD-- 153
           ++I G+  + D  +A+  F RM          + SGL  N        VL  CG +    
Sbjct: 184 SLIRGYSNSDDPIDAVLLFRRM----------ICSGLSPNEF--TLPFVLKACGCKSAYW 231

Query: 154 ------------GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
                       G   LV   N LI  Y   G +  ARKLFD I              + 
Sbjct: 232 EAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDIT------------DKT 279

Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
           +VSWNSMI       D++                 N +   Y    ++  A  +F +   
Sbjct: 280 LVSWNSMIEITGVKIDIIVR---------------NALXDMYAKCGNLHSAQAIFDRTQE 324

Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
            + ++W +M+S YAQ G++E+A   F +MP KN+VSWNSMI+       Y  A+ LF +M
Sbjct: 325 KNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKM 384

Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAI 380
           +     PD  T  SIL+  S + DL +G +IH  +++      V + N+LI MYA+CG +
Sbjct: 385 RNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPV 444

Query: 381 VEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
           V A  IF EM   KN+VSWN +IG  A HG   EA++LF+ M++   LP  IT   +LSA
Sbjct: 445 VTALDIFLEMPG-KNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSA 503

Query: 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKA 500
           C+H+GLV+ G  +F  M   Y +   IEH+A +VD++GR G L +A++LI  MP +PD  
Sbjct: 504 CSHSGLVDMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVV 563

Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
           VWGALLGACR+H NVE+ +   + L+++EP +   YVL+ N+Y +  RW+D  ++R LM 
Sbjct: 564 VWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMI 623

Query: 561 SNNIKKPTGYSWVDFSPC 578
              IKK    S ++   C
Sbjct: 624 DRGIKKGRAISSIEIDGC 641



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 183/395 (46%), Gaps = 70/395 (17%)

Query: 1   MISGYVKRREMAKARKLFDEMPQRDVVSWNVMI--SGY---ISSRGS--------GFLEE 47
           +I+ YV    +  ARKLFD++  + +VSWN MI  +G    I  R +        G L  
Sbjct: 255 LIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVRNALXDMYAKCGNLHS 314

Query: 48  ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDV 107
           A+ +FD   E++ V+W ++IS YA+ G +E A ++F+ MP +NVVSWN+MIS +L+ G  
Sbjct: 315 AQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQY 374

Query: 108 ANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN 163
             A++ F++M       D A+L ++++   Q G+L    ++     S  + G   V  YN
Sbjct: 375 REALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILS--NKGAYGVTLYN 432

Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
           +LI  Y + G V  A  +F ++P             +N+VSWN +I   A  G  + A +
Sbjct: 433 SLIDMYAKCGPVVTALDIFLEMP------------GKNLVSWNVIIGALALHGCGLEAIK 480

Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
           +FE+M    T                            PD +T   ++S  +  G +++ 
Sbjct: 481 LFEEMQADGTL---------------------------PDEITLTGLLSACSHSGLVDMG 513

Query: 284 LDFFKRM-----PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
           L +F RM       + +  +  M+           AI+L  +M +   KPD   + ++L 
Sbjct: 514 LYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLGEAIELIGRMPM---KPDVVVWGALL- 569

Query: 339 MSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITM 373
              G   +H  ++I + + K ++   P +  L  +
Sbjct: 570 ---GACRIHGNVEIGKQILKQLLELEPHSGGLYVL 601


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,039,999,053
Number of Sequences: 23463169
Number of extensions: 370224816
Number of successful extensions: 1146010
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7376
Number of HSP's successfully gapped in prelim test: 4713
Number of HSP's that attempted gapping in prelim test: 811021
Number of HSP's gapped (non-prelim): 78285
length of query: 579
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 431
effective length of database: 8,886,646,355
effective search space: 3830144579005
effective search space used: 3830144579005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)