BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036340
(579 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 63 WNTVISGYAKTGEMEEALRLFN---SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119
W + + Y K G+ +EA+ + + R+ +W + + + + GD AIE++ +
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 120 RDSASLSA---LVSGLIQNGELDEA 141
D S A L + + G+ DEA
Sbjct: 64 LDPRSAEAWYNLGNAYYKQGDYDEA 88
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 15/146 (10%)
Query: 93 SWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSA---LVSGLIQNGELDEAARVLVKCG 149
+W + + + + GD AIE++ + D S A L + + G+ DEA K
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA- 61
Query: 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
+ A+ L Y ++G +EA + + K + D R+ +W ++
Sbjct: 62 --LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK-ALELD--------PRSAEAWYNLG 110
Query: 210 MCYAKAGDVVSAREIFEQMLERDTFS 235
Y K GD A E +++ LE D S
Sbjct: 111 NAYYKQGDYDEAIEYYQKALELDPRS 136
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 56 PERDCVTWNTVISGYAKTGEMEEALRLFN---SMPARNVVSWNAMISGFLQNGDVANAIE 112
P W + + Y K G+ +EA+ + + N +W + + + + GD AIE
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 113 FFDRMPGRDSASLSA---LVSGLIQNGELDEA 141
++ + D + A L + + G+ DEA
Sbjct: 65 YYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 96
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 63 WNTVISGYAKTGEMEEALRLFN---SMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
W + + Y K G+ +EA+ + + N +W + + + + GD AIE++ +
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
>pdb|1AL3|A Chain A, Cofactor Binding Fragment Of Cysb From Klebsiella
Aerogenes
Length = 324
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 17/114 (14%)
Query: 401 AMIGGCASHGFATEALELFKSM---------RSFKVLPTY--ITFISV-LSACAHAGLVE 448
A+ G A ATEAL L+ + RS V P + T SV + A LV
Sbjct: 137 AVSKGNADFAIATEALHLYDDLVMLPCYHWNRSIVVTPEHPLATKGSVSIEELAQYPLVT 196
Query: 449 -----EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
GR + N G+ PRI A+ D++ + RL + +I M +P
Sbjct: 197 YTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDP 250
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 56 PERDCVTWNTVISGYAKTGEMEEALRLFN---SMPARNVVSWNAMISGFLQNGDVANAIE 112
P W + + Y K G+ +EA+ + + N +W + + + + GD AIE
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 113 FFDR---MPGRDSASLSALVSGLIQNGELDEA 141
++ + + ++ + L + + G+ DEA
Sbjct: 65 YYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 96
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 63 WNTVISGYAKTGEMEEALRLFN---SMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
W + + Y K G+ +EA+ + + N +W + + + + GD AIE++ +
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 56 PERDCVTWNTVISGYAKTGEMEEALRLFN---SMPARNVVSWNAMISGFLQNGDVANAIE 112
P W + + Y K G+ ++A+ + + N +W + + + + GD AIE
Sbjct: 5 PGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIE 64
Query: 113 FFDR 116
++ +
Sbjct: 65 YYQK 68
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 56 PERDCVTWNTVISGYAKTGEMEEALRLFN---SMPARNVVSWNAMISGFLQNGDVANAIE 112
P W + + Y K G+ +EA+ + + N +W + + + + GD AIE
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 113 FFDR 116
++ +
Sbjct: 65 YYQK 68
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 63 WNTVISGYAKTGEMEEALRLFN---SMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
W + + Y K G+ +EA+ + + R+ +W + + + + GD AIE++ +
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 15/190 (7%)
Query: 107 VANAIEFFDRMPGRDSASLSALV---SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN 163
+ANAIE + + +AL+ S L E E + DG D
Sbjct: 311 LANAIENMRKFQNSQKLAQAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLD----RQ 366
Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
LI GY + E A +I D G F RN S + A + +++
Sbjct: 367 ELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKD 426
Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
E ++ N IS ++E +++F + H ++ TW M+SG + ++
Sbjct: 427 KLESAFQKFDQDGNGKIS-------VDELASVF-GLDHLESKTWKEMISGIDSNNDGDVD 478
Query: 284 LDFFKRMPQK 293
+ F +M QK
Sbjct: 479 FEEFCKMIQK 488
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,242,725
Number of Sequences: 62578
Number of extensions: 701627
Number of successful extensions: 1644
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1634
Number of HSP's gapped (non-prelim): 23
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)