BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036340
(579 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2
SV=1
Length = 656
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/579 (62%), Positives = 454/579 (78%), Gaps = 3/579 (0%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
MISGYVKRREM +ARKLFD MP+RDVV+WN MISGY+S G FLEEAR LFD MP RD
Sbjct: 77 MISGYVKRREMNQARKLFDVMPKRDVVTWNTMISGYVSCGGIRFLEEARKLFDEMPSRDS 136
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
+WNT+ISGYAK + EAL LF MP RN VSW+AMI+GF QNG+V +A+ F +MP +
Sbjct: 137 FSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVK 196
Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
DS+ L ALV+GLI+N L EAA VL + GS G EDLV AYNTLIVGYGQRG+VE AR
Sbjct: 197 DSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARC 256
Query: 181 LFDKIPVNCDR---GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
LFD+IP C GE RF +N+VSWNSMI Y K GDVVSAR +F+QM +RDT SWN
Sbjct: 257 LFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWN 316
Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297
TMI GY+HV ME+A LF +MP+ D +WN MVSGYA +GN+ELA +F++ P+K+ VS
Sbjct: 317 TMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVS 376
Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
WNS+IA E NKDY+ A+ LFI+M +EGEKPD HT +S+LS S+G+V+L LGMQ+HQ+V
Sbjct: 377 WNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVV 436
Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
KTVIPDVP++NALITMY+RCG I+E+R IF+EMKL + V++WNAMIGG A HG A+EAL
Sbjct: 437 KTVIPDVPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALN 496
Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
LF SM+S + P++ITF+SVL+ACAHAGLV+E + F SM++ Y IEP++EH++SLV++
Sbjct: 497 LFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNVT 556
Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
G+ E+AM +I MPFEPDK VWGALL ACR++NNV LA VAAEA+ ++EPE+STPYV
Sbjct: 557 SGQGQFEEAMYIITSMPFEPDKTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPYV 616
Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
LLYNMYAD+G WD+A++VR+ M+S IKK G SWVD S
Sbjct: 617 LLYNMYADMGLWDEASQVRMNMESKRIKKERGSSWVDSS 655
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 105/400 (26%), Positives = 169/400 (42%), Gaps = 84/400 (21%)
Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
N MI ++G + AR+IFE++ R+T +WNTMISGY+ +M +A LF MP D +
Sbjct: 48 NQMI----RSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVV 103
Query: 266 TWNAMVSGYAQIGNLEL----------------------------------ALDFFKRMP 291
TWN M+SGY G + AL F++MP
Sbjct: 104 TWNTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMP 163
Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH---- 347
++N VSW++MI G N + + A+ LF +M V+ P + ++ +G++
Sbjct: 164 ERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSP-------LCALVAGLIKNERLSE 216
Query: 348 ----LGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM------------- 390
LG Q +V+ V N LI Y + G + AR +F+++
Sbjct: 217 AAWVLG-QYGSLVSGRE-DLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFR 274
Query: 391 -KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
+ KNVVSWN+MI G A LF M+ I++ +++ H +E+
Sbjct: 275 ERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDT----ISWNTMIDGYVHVSRMED 330
Query: 450 GRQHFKSMVNE--YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507
F M N + + +AS+ G +E A + P E W +++
Sbjct: 331 AFALFSEMPNRDAHSWNMMVSGYASV-------GNVELARHYFEKTP-EKHTVSWNSIIA 382
Query: 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
A + + + A V M +E E P+ L + A G
Sbjct: 383 AYEKNKDYKEA-VDLFIRMNIEGEKPDPHTLTSLLSASTG 421
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 510 bits (1313), Expect = e-143, Method: Compositional matrix adjust.
Identities = 255/575 (44%), Positives = 372/575 (64%), Gaps = 23/575 (4%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
MISGY++ E ARKLFDEMP+RD+VSWNVMI GY+ +R G +AR LF+IMPERD
Sbjct: 101 MISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLG---KARELFEIMPERDV 157
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
+WNT++SGYA+ G +++A +F+ MP +N VSWNA++S ++QN + A F
Sbjct: 158 CSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENW 217
Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
S + L+ G ++ ++ EA + R D+V ++NT+I GY Q G+++EAR+
Sbjct: 218 ALVSWNCLLGGFVKKKKIVEARQFFDSMNVR-----DVV-SWNTIITGYAQSGKIDEARQ 271
Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
LFD+ PV +++ +W +M+ Y + V ARE+F++M ER+ SWN M+
Sbjct: 272 LFDESPV------------QDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAML 319
Query: 241 SGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300
+GY+ ME A LF MP + TWN M++GYAQ G + A + F +MP+++ VSW +
Sbjct: 320 AGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAA 379
Query: 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKT 359
MIAG + A++LF+QM+ EG + +R +FSS LS + +V L LG Q+H ++V
Sbjct: 380 MIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGG 439
Query: 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF 419
+ NAL+ MY +CG+I EA +F+EM K++VSWN MI G + HGF AL F
Sbjct: 440 YETGCFVGNALLLMYCKCGSIEEANDLFKEMAG-KDIVSWNTMIAGYSRHGFGEVALRFF 498
Query: 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479
+SM+ + P T ++VLSAC+H GLV++GRQ+F +M +YG+ P +H+A +VD++GR
Sbjct: 499 ESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGR 558
Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539
G LEDA +L+K MPFEPD A+WG LLGA RVH N ELA+ AA+ + +EPENS YVLL
Sbjct: 559 AGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLL 618
Query: 540 YNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
N+YA GRW D ++R+ M+ +KK GYSW++
Sbjct: 619 SNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 653
Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 106/364 (29%), Positives = 176/364 (48%), Gaps = 36/364 (9%)
Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
L+KCG + ++ +N I Y + GR EA ++F ++P + + VS
Sbjct: 56 LLKCG------DSDIKEWNVAISSYMRTGRCNEALRVFKRMP------------RWSSVS 97
Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDT 264
+N MI Y + G+ AR++F++M ERD SWN MI GY+ ++ +A LF MP D
Sbjct: 98 YNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDV 157
Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
+WN M+SGYAQ G ++ A F RMP+KN VSWN++++ N E A LF
Sbjct: 158 CSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF------ 211
Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEAR 384
+ + S + G V ++ Q + DV N +IT YA+ G I EAR
Sbjct: 212 -KSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEAR 270
Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
+F+E +++V +W AM+ G + EA ELF M +++ ++L+
Sbjct: 271 QLFDESP-VQDVFTWTAMVSGYIQNRMVEEARELFDKMPE----RNEVSWNAMLAGYVQG 325
Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
+E ++ F M + + +++ + G++ +A +L MP + D W A
Sbjct: 326 ERMEMAKELFDVMPCR-----NVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAA 379
Query: 505 LLGA 508
++
Sbjct: 380 MIAG 383
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/567 (38%), Positives = 353/567 (62%), Gaps = 24/567 (4%)
Query: 10 EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
++ +ARKLFD + + SWN M++GY ++ +AR LFD MP+R+ ++WN ++SG
Sbjct: 32 KIHEARKLFDSCDSKSISSWNSMVAGYFANL---MPRDARKLFDEMPDRNIISWNGLVSG 88
Query: 70 YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
Y K GE++EA ++F+ MP RNVVSW A++ G++ NG V A F +MP ++ S + ++
Sbjct: 89 YMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVML 148
Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
G +Q+G +D+A ++ + +++ R ++I G + GRV+EAR++FD++
Sbjct: 149 IGFLQDGRIDDACKLYEMIPDK----DNIAR--TSMIHGLCKEGRVDEAREIFDEMS--- 199
Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDM 249
+R++++W +M+ Y + V AR+IF+ M E+ SW +M+ GY+ +
Sbjct: 200 ---------ERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRI 250
Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
E+A LF MP + NAM+SG Q G + A F M ++N SW ++I E N
Sbjct: 251 EDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNG 310
Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINN 368
A+ LFI MQ +G +P T SILS+ + + LH G Q+H Q+V DV + +
Sbjct: 311 FELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVAS 370
Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR-SFKV 427
L+TMY +CG +V++++IF+ K+++ WN++I G ASHG EAL++F M S
Sbjct: 371 VLMTMYIKCGELVKSKLIFDRFPS-KDIIMWNSIISGYASHGLGEEALKVFCEMPLSGST 429
Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
P +TF++ LSAC++AG+VEEG + ++SM + +G++P H+A +VD++GR GR +AM
Sbjct: 430 KPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAM 489
Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
++I M EPD AVWG+LLGACR H+ +++A+ A+ L+++EPENS Y+LL NMYA G
Sbjct: 490 EMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQG 549
Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVD 574
RW D E+R LMK+ ++K G SW +
Sbjct: 550 RWADVAELRKLMKTRLVRKSPGCSWTE 576
Score = 191 bits (486), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/451 (26%), Positives = 224/451 (49%), Gaps = 63/451 (13%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
++SGY+K E+ +ARK+FD MP+R+VVSW ++ GY+ +G ++ A LF MPE++
Sbjct: 85 LVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVH---NGKVDVAESLFWKMPEKNK 141
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
V+W ++ G+ + G +++A +L+ +P ++ ++ +MI G + G V A E FD M R
Sbjct: 142 VSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSER 201
Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
+ + +V+G QN +D+A ++ + + ++ ++++GY Q GR+E+A +
Sbjct: 202 SVITWTTMVTGYGQNNRVDDARKIFDVMPEKTE------VSWTSMLMGYVQNGRIEDAEE 255
Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
LF+ +PV + +++ N+MI + G++ AR +F+ M ER+ SW T+I
Sbjct: 256 LFEVMPV------------KPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVI 303
Query: 241 SGYIHVLDMEEASNLFVKMPHP-------------------------------------- 262
+ EA +LF+ M
Sbjct: 304 KIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFD 363
Query: 263 -DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
D + +++ Y + G L + F R P K+++ WNS+I+G ++ E A+K+F +M
Sbjct: 364 VDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEM 423
Query: 322 QVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCG 378
+ G KP+ TF + LS S + G++I++ + V P ++ M R G
Sbjct: 424 PLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAG 483
Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
EA + + M + + W +++G C +H
Sbjct: 484 RFNEAMEMIDSMTVEPDAAVWGSLLGACRTH 514
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 159/326 (48%), Gaps = 27/326 (8%)
Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
N I ++ G + AR++F+ + SWN+M++GY L +A LF +MP + +
Sbjct: 21 NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80
Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
+WN +VSGY + G ++ A F MP++N+VSW +++ G N + A LF +M
Sbjct: 81 SWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM---- 136
Query: 326 EKPDRHTFSSILSMSSGIVDLHL--GMQIHQMVTKTVIPDVPINNALITMYARCGAIVEA 383
P+++ S + + + D + ++++M+ D ++I + G + EA
Sbjct: 137 --PEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK---DNIARTSMIHGLCKEGRVDEA 191
Query: 384 RIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443
R IF+EM ++V++W M+ G + +A ++F M T +++ S+L
Sbjct: 192 REIFDEMS-ERSVITWTTMVTGYGQNNRVDDARKIFDVMPE----KTEVSWTSMLMGYVQ 246
Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG 503
G +E+ + F+ M ++P I A ++ +G+ G + A + M E + A W
Sbjct: 247 NGRIEDAEELFEVM----PVKPVIACNA-MISGLGQKGEIAKARRVFDSMK-ERNDASWQ 300
Query: 504 ALLGACRVH--NNVELAQVAAEALMK 527
++ ++H N EL + LM+
Sbjct: 301 TVI---KIHERNGFELEALDLFILMQ 323
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 26/199 (13%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
+++ Y+K E+ K++ +FD P +D++ WN +ISGY S G EEA +F MP
Sbjct: 372 LMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYAS---HGLGEEALKVFCEMPLSGS 428
Query: 57 -ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANA 110
+ + VT+ +S + G +EE L+++ SM + V + M+ + G A
Sbjct: 429 TKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEA 488
Query: 111 IEFFDRMPGR-DSASLSALVSGLIQNGELDEA---ARVLVKCGSRCDGGEDLVRAYNTLI 166
+E D M D+A +L+ + +LD A A+ L++ G Y L
Sbjct: 489 MEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSG------TYILLS 542
Query: 167 VGYGQRGR---VEEARKLF 182
Y +GR V E RKL
Sbjct: 543 NMYASQGRWADVAELRKLM 561
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/563 (38%), Positives = 338/563 (60%), Gaps = 23/563 (4%)
Query: 13 KARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAK 72
+ARK FD + + + SWN ++SGY S+ G +EAR LFD M ER+ V+WN ++SGY K
Sbjct: 35 EARKFFDSLQFKAIGSWNSIVSGYFSN---GLPKEARQLFDEMSERNVVSWNGLVSGYIK 91
Query: 73 TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGL 132
+ EA +F MP RNVVSW AM+ G++Q G V A F RMP R+ S + + GL
Sbjct: 92 NRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGL 151
Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
I +G +D+A ++ + D+V + N +I G + GRV+EAR +FD++
Sbjct: 152 IDDGRIDKARKLYDMMPVK-----DVVASTN-MIGGLCREGRVDEARLIFDEMR------ 199
Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEA 252
+RN+V+W +MI Y + V AR++FE M E+ SW +M+ GY +E+A
Sbjct: 200 ------ERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDA 253
Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
F MP + NAM+ G+ ++G + A F M ++ +W MI E
Sbjct: 254 EEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFEL 313
Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALI 371
A+ LF QMQ +G +P + SILS+ + + L G Q+H +V DV + + L+
Sbjct: 314 EALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLM 373
Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
TMY +CG +V+A+++F+ K+++ WN++I G ASHG EAL++F M S +P
Sbjct: 374 TMYVKCGELVKAKLVFDRFSS-KDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNK 432
Query: 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIK 491
+T I++L+AC++AG +EEG + F+SM +++ + P +EH++ VD++GR G+++ AM+LI+
Sbjct: 433 VTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIE 492
Query: 492 GMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551
M +PD VWGALLGAC+ H+ ++LA+VAA+ L + EP+N+ YVLL ++ A +W D
Sbjct: 493 SMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGD 552
Query: 552 ANEVRLLMKSNNIKKPTGYSWVD 574
VR M++NN+ K G SW++
Sbjct: 553 VAVVRKNMRTNNVSKFPGCSWIE 575
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 122/450 (27%), Positives = 219/450 (48%), Gaps = 62/450 (13%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
++SGY+K R + +AR +F+ MP+R+VVSW M+ GY+ G + EA LF MPER+
Sbjct: 85 LVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQ---EGMVGEAESLFWRMPERNE 141
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
V+W + G G +++A +L++ MP ++VV+ MI G + G V A FD M R
Sbjct: 142 VSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRER 201
Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
+ + + +++G QN +D A ++ + + ++ ++++GY GR+E+A +
Sbjct: 202 NVVTWTTMITGYRQNNRVDVARKLFEVMPEKTE------VSWTSMLLGYTLSGRIEDAEE 255
Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
F+ +P+ + +++ N+MI+ + + G++ AR +F+ M +RD +W MI
Sbjct: 256 FFEVMPM------------KPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMI 303
Query: 241 SGYIHVLDMEEASNLFVKMPHP-------------------------------------- 262
Y EA +LF +M
Sbjct: 304 KAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFD 363
Query: 263 -DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
D + +++ Y + G L A F R K+++ WNS+I+G ++ E A+K+F +M
Sbjct: 364 DDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEM 423
Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ-MVTK-TVIPDVPINNALITMYARCGA 379
G P++ T +IL+ S L G++I + M +K V P V + + M R G
Sbjct: 424 PSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQ 483
Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
+ +A + E M + + W A++G C +H
Sbjct: 484 VDKAMELIESMTIKPDATVWGALLGACKTH 513
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 147/298 (49%), Gaps = 22/298 (7%)
Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVS 272
++ G + AR+ F+ + + SWN+++SGY +EA LF +M + ++WN +VS
Sbjct: 28 SRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVS 87
Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
GY + + A + F+ MP++N+VSW +M+ G A LF +M P+R+
Sbjct: 88 GYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM------PERNE 141
Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
S + M G++D + ++ + DV + +I R G + EAR+IF+EM+
Sbjct: 142 VSWTV-MFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMR- 199
Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
+NVV+W MI G + A +LF+ M T +++ S+L +G +E+ +
Sbjct: 200 ERNVVTWTTMITGYRQNNRVDVARKLFEVMPE----KTEVSWTSMLLGYTLSGRIEDAEE 255
Query: 453 HFKSMVNEYGIEPRIEHFASLVDI--VGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
F+ M ++P I A +V VG + DL++ + D A W ++ A
Sbjct: 256 FFEVM----PMKPVIACNAMIVGFGEVGEISKARRVFDLME----DRDNATWRGMIKA 305
>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2
SV=1
Length = 627
Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/535 (37%), Positives = 324/535 (60%), Gaps = 22/535 (4%)
Query: 43 GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-NVVSWNAMISGF 101
G + EAR LFD +PERD VTW VI+GY K G+M EA LF+ + +R NVV+W AM+SG+
Sbjct: 60 GKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGY 119
Query: 102 LQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
L++ ++ A F MP R+ S + ++ G Q+G +D+A + + R + +
Sbjct: 120 LRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERN------IVS 173
Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
+N+++ QRGR++EA LF+++P +R++VSW +M+ AK G V A
Sbjct: 174 WNSMVKALVQRGRIDEAMNLFERMP------------RRDVVSWTAMVDGLAKNGKVDEA 221
Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281
R +F+ M ER+ SWN MI+GY ++EA LF MP D +WN M++G+ + +
Sbjct: 222 RRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMN 281
Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMS 340
A F RMP+KN++SW +MI G NK+ E A+ +F +M +G KP+ T+ SILS
Sbjct: 282 KACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSAC 341
Query: 341 SGIVDLHLGMQIHQMVTKTVIPDVPI-NNALITMYARCGAIVEARIIFEE-MKLLKNVVS 398
S + L G QIHQ+++K+V I +AL+ MY++ G ++ AR +F+ + ++++S
Sbjct: 342 SDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLIS 401
Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
WN+MI A HG EA+E++ MR P+ +T++++L AC+HAGLVE+G + FK +V
Sbjct: 402 WNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLV 461
Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
+ + R EH+ LVD+ GR GRL+D + I ++ +GA+L AC VHN V +A
Sbjct: 462 RDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACNVHNEVSIA 521
Query: 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
+ + +++ +++ YVL+ N+YA G+ ++A E+R+ MK +KK G SWV
Sbjct: 522 KEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWV 576
Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 136/449 (30%), Positives = 233/449 (51%), Gaps = 51/449 (11%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
M+SGY++ ++++ A LF EMP+R+VVSWN MI GY S G +++A LFD MPER+
Sbjct: 115 MVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQS---GRIDKALELFDEMPERNI 171
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
V+WN+++ + G ++EA+ LF MP R+VVSW AM+ G +NG V A FD MP R
Sbjct: 172 VSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPER 231
Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
+ S +A+++G QN +DEA ++ R D ++NT+I G+ + + +A
Sbjct: 232 NIISWNAMITGYAQNNRIDEADQLFQVMPER-----DFA-SWNTMITGFIRNREMNKACG 285
Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI 240
LFD++P ++N++SW +MI Y + + A +F +ML + N +
Sbjct: 286 LFDRMP------------EKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPN--V 331
Query: 241 SGYIHVLDM----------EEASNLFVKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKR 289
Y+ +L ++ L K H + + +A+++ Y++ G L A F
Sbjct: 332 GTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDN 391
Query: 290 --MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347
+ Q++L+SWNSMIA + + AI+++ QM+ G KP T+ ++L S +
Sbjct: 392 GLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVE 451
Query: 348 LGMQIHQMVTKTVIPDVPIN----NALITMYARCGAI--VEARIIFEEMKLLKNVVSWNA 401
GM+ + + + +P+ L+ + R G + V I ++ +L ++ + A
Sbjct: 452 KGMEFFKDLVRD--ESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLSRSF--YGA 507
Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPT 430
++ C H + A E+ K KVL T
Sbjct: 508 ILSACNVHNEVSIAKEVVK-----KVLET 531
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 207/514 (40%), Positives = 304/514 (59%), Gaps = 53/514 (10%)
Query: 64 NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN-GDVANAIEFFDRMPGRDS 122
N +I+ ++G+++ ALR+F+ M A+N ++WN+++ G ++ + A + FD +P D+
Sbjct: 65 NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDT 124
Query: 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
S YN ++ Y + E+A+ F
Sbjct: 125 FS-------------------------------------YNIMLSCYVRNVNFEKAQSFF 147
Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
D++P ++ SWN+MI YA+ G++ ARE+F M+E++ SWN MISG
Sbjct: 148 DRMPF------------KDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISG 195
Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSM 301
YI D+E+AS+ F P + W AM++GY + +ELA FK M KNLV+WN+M
Sbjct: 196 YIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAM 255
Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TV 360
I+G N E +KLF M EG +P+ SS L S + L LG QIHQ+V+K T+
Sbjct: 256 ISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTL 315
Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
DV +LI+MY +CG + +A +FE MK K+VV+WNAMI G A HG A +AL LF+
Sbjct: 316 CNDVTALTSLISMYCKCGELGDAWKLFEVMKK-KDVVAWNAMISGYAQHGNADKALCLFR 374
Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
M K+ P +ITF++VL AC HAGLV G +F+SMV +Y +EP+ +H+ +VD++GR
Sbjct: 375 EMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRA 434
Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540
G+LE+A+ LI+ MPF P AV+G LLGACRVH NVELA+ AAE L+++ +N+ YV L
Sbjct: 435 GKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLA 494
Query: 541 NMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
N+YA RW+D VR MK +N+ K GYSW++
Sbjct: 495 NIYASKNRWEDVARVRKRMKESNVVKVPGYSWIE 528
Score = 165 bits (418), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 122/418 (29%), Positives = 198/418 (47%), Gaps = 59/418 (14%)
Query: 11 MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGY 70
M +A +LFDE+P+ D S+N+M+S Y+ R F E+A+ FD MP +D +WNT+I+GY
Sbjct: 109 MMEAHQLFDEIPEPDTFSYNIMLSCYV--RNVNF-EKAQSFFDRMPFKDAASWNTMITGY 165
Query: 71 AKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS 130
A+ GEME+A LF SM +N VSWNAMISG+++ GD+ A FF P R + +A+++
Sbjct: 166 ARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMIT 225
Query: 131 GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
G ++ ++ E A + K ++LV +N +I GY + R E+ KLF
Sbjct: 226 GYMKAKKV-ELAEAMFK---DMTVNKNLV-TWNAMISGYVENSRPEDGLKLF-------- 272
Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE----QMLERDTFSWNTMISGYIHV 246
R + N +S ++ ++ + R+I + L D + ++IS Y
Sbjct: 273 RAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKC 332
Query: 247 LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
++ +A LF M D + WNAM+SGYAQ GN + AL F+ M +
Sbjct: 333 GELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKI----------- 381
Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDV 364
+PD TF ++L + +++GM + + + V P
Sbjct: 382 --------------------RPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQP 421
Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG------FATEAL 416
++ + R G + EA + M + + ++G C H FA E L
Sbjct: 422 DHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKL 479
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 134/317 (42%), Gaps = 41/317 (12%)
Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNA------------------------ 269
F N +I+ + D++ A +F M +T+TWN+
Sbjct: 62 FPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPE 121
Query: 270 --------MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
M+S Y + N E A FF RMP K+ SWN+MI G + E A +LF M
Sbjct: 122 PDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSM 181
Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIV 381
+ E S +M SG ++ + + V A+IT Y + +
Sbjct: 182 MEKNE-------VSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVE 234
Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
A +F++M + KN+V+WNAMI G + + L+LF++M + P S L C
Sbjct: 235 LAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGC 294
Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
+ ++ GRQ +V++ + + SL+ + + G L DA L + M + D
Sbjct: 295 SELSALQLGRQ-IHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK-KKDVVA 352
Query: 502 WGALLGACRVHNNVELA 518
W A++ H N + A
Sbjct: 353 WNAMISGYAQHGNADKA 369
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 127/305 (41%), Gaps = 44/305 (14%)
Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQM--------------------------QVEG 325
Q + N +IA C + D +GA+++F M Q+
Sbjct: 58 QDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFD 117
Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARI 385
E P+ TFS + +S + +++ + + D N +IT YAR G + +AR
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFE-KAQSFFDRMPFKDAASWNTMITGYARRGEMEKARE 176
Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT--YITFISVLSACAH 443
+F M + KN VSWNAMI G G +L K+ FKV P + + ++++
Sbjct: 177 LFYSM-MEKNEVSWNAMISGYIECG------DLEKASHFFKVAPVRGVVAWTAMITGYMK 229
Query: 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE---PDKA 500
A VE FK M + + + +++ + R ED + L + M E P+ +
Sbjct: 230 AKKVELAEAMFKDMT----VNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSS 285
Query: 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENS-TPYVLLYNMYADVGRWDDANEVRLLM 559
+ L C + ++L + + + K N T L +MY G DA ++ +M
Sbjct: 286 GLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVM 345
Query: 560 KSNNI 564
K ++
Sbjct: 346 KKKDV 350
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 212/598 (35%), Positives = 320/598 (53%), Gaps = 75/598 (12%)
Query: 30 NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
N +I Y G LE+ R +FD MP+R+ TWN+V++G K G ++EA LF SMP R
Sbjct: 59 NRLIDAY---SKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPER 115
Query: 90 NVVSWNAMISGFLQNGDVANAIEFFDRMPGR-------DSASLSALVSGLIQNGELDEAA 142
+ +WN+M+SGF Q+ A+ +F M AS+ + SGL + +
Sbjct: 116 DQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVH 175
Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
++ K D V + L+ Y + G V +A+++FD++ RN+
Sbjct: 176 SLIAKSPFLSD-----VYIGSALVDMYSKCGNVNDAQRVFDEMG------------DRNV 218
Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLE-------------------------------- 230
VSWNS+I C+ + G V A ++F+ MLE
Sbjct: 219 VSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGR 278
Query: 231 --------RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282
D N + Y ++EA +F MP + + +M+SGYA + +
Sbjct: 279 VVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA 338
Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
A F +M ++N+VSWN++IAG N + E A+ LF ++ E P ++F++IL +
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACAD 398
Query: 343 IVDLHLGMQIHQMVTKTVIP-------DVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
+ +LHLGMQ H V K D+ + N+LI MY +CG + E ++F +M + ++
Sbjct: 399 LAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERD 457
Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
VSWNAMI G A +G+ EALELF+ M P +IT I VLSAC HAG VEEGR +F
Sbjct: 458 CVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFS 517
Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
SM ++G+ P +H+ +VD++GR G LE+A +I+ MP +PD +WG+LL AC+VH N+
Sbjct: 518 SMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNI 577
Query: 516 ELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
L + AE L++VEP NS PYVLL NMYA++G+W+D VR M+ + K G SW+
Sbjct: 578 TLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWI 635
Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 183/346 (52%), Gaps = 11/346 (3%)
Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
+ F N +I Y +E+ +F KMP + TWN++V+G ++G L+ A F+ MP
Sbjct: 54 EIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMP 113
Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
+++ +WNSM++G + E A+ F M EG + ++F+S+LS SG+ D++ G+Q
Sbjct: 114 ERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQ 173
Query: 352 IHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
+H ++ K+ + DV I +AL+ MY++CG + +A+ +F+EM +NVVSWN++I +G
Sbjct: 174 VHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMG-DRNVVSWNSLITCFEQNG 232
Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
A EAL++F+ M +V P +T SV+SACA ++ G++ +V + I
Sbjct: 233 PAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILS 292
Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM--KV 528
+ VD+ + R+++A + MP A + G A A LM K+
Sbjct: 293 NAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMA------ASTKAARLMFTKM 346
Query: 529 EPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
N + L Y G ++A + L+K ++ PT YS+ +
Sbjct: 347 AERNVVSWNALIAGYTQNGENEEALSLFCLLKRESV-CPTHYSFAN 391
>sp|P0C7R0|PPR69_ARATH Pentatricopeptide repeat-containing protein At1g32415,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2
SV=1
Length = 761
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 221/616 (35%), Positives = 347/616 (56%), Gaps = 57/616 (9%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
M++GYVK R M +A LF EMP ++VVSW VM++ G E+A LFD MPER+
Sbjct: 114 MLTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTALCDD---GRSEDAVELFDEMPERNV 169
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
V+WNT+++G + G+ME+A ++F++MP+R+VVSWNAMI G+++N + A F M +
Sbjct: 170 VSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEK 229
Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
+ + +++V G + G++ EA R+ C+ E + ++ +I G+ EA
Sbjct: 230 NVVTWTSMVYGYCRYGDVREAYRLF------CEMPERNIVSWTAMISGFAWNELYREALM 283
Query: 181 LFDKIPVNCDRGEGN---------------VRFKR-------NIVS--W----------N 206
LF ++ + D N V F+R ++S W
Sbjct: 284 LFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVISNGWETVDHDGRLAK 343
Query: 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLF--VKMPHPDT 264
S++ YA +G + SA+ + + D S N +I+ Y+ D+E A LF VK H D
Sbjct: 344 SLVHMYASSGLIASAQSLLNESF--DLQSCNIIINRYLKNGDLERAETLFERVKSLH-DK 400
Query: 265 LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE 324
++W +M+ GY + G++ A F+++ K+ V+W MI+G N+ + A L M
Sbjct: 401 VSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRC 460
Query: 325 GEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI---PDVPINNALITMYARCGAIV 381
G KP T+S +LS + +L G IH ++ KT PD+ + N+L++MYA+CGAI
Sbjct: 461 GLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIE 520
Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
+A IF +M + K+ VSWN+MI G + HG A +AL LFK M P +TF+ VLSAC
Sbjct: 521 DAYEIFAKM-VQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSAC 579
Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
+H+GL+ G + FK+M Y I+P I+H+ S++D++GR G+L++A + I +PF PD V
Sbjct: 580 SHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISALPFTPDHTV 639
Query: 502 WGALLGAC----RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557
+GALLG C R + +A+ AA L++++P N+ +V L N+YA +GR D E+R
Sbjct: 640 YGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNAPGHVALCNVYAGLGRHDMEKEMRK 699
Query: 558 LMKSNNIKKPTGYSWV 573
M +KK G SWV
Sbjct: 700 EMGIKGVKKTPGCSWV 715
Score = 188 bits (478), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 146/481 (30%), Positives = 238/481 (49%), Gaps = 62/481 (12%)
Query: 11 MAKARKLFDEMPQRD----VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTV 66
+ AR L D++PQR VV W ++S Y + G+L+EAR LF++MPER+ VT N +
Sbjct: 58 LVHARHLLDKIPQRGSINRVVYWTSLLSKYAKT---GYLDEARVLFEVMPERNIVTCNAM 114
Query: 67 ISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS 126
++GY K M EA LF MP +NVVSW M++ +G +A+E FD MP R+ S +
Sbjct: 115 LTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWN 173
Query: 127 ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
LV+GLI+NG++++A +V SR D+V ++N +I GY + +EEA+ LF +
Sbjct: 174 TLVTGLIRNGDMEKAKQVFDAMPSR-----DVV-SWNAMIKGYIENDGMEEAKLLFGDMS 227
Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246
++N+V+W SM+ Y + GDV A +F +M ER+ SW MISG+
Sbjct: 228 ------------EKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWN 275
Query: 247 LDMEEASNLFVKMPHP-DTLTWNA--MVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
EA LF++M D ++ N ++S G L + F+R+ ++ + +
Sbjct: 276 ELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVE---FRRLGEQ--LHAQVISN 330
Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363
G ET D++G + K H ++ SSG++ ++ ++ D
Sbjct: 331 GWET-VDHDGRLA----------KSLVHMYA-----SSGLI-----ASAQSLLNESF--D 367
Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
+ N +I Y + G + A +FE +K L + VSW +MI G G + A LF+ +
Sbjct: 368 LQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLH 427
Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
+T+ ++S L E MV G++P ++ L+ G L
Sbjct: 428 D----KDGVTWTVMISGLVQNELFAEAASLLSDMV-RCGLKPLNSTYSVLLSSAGATSNL 482
Query: 484 E 484
+
Sbjct: 483 D 483
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 14/160 (8%)
Query: 369 ALITMYARCGAIVEARIIFEEMKL---LKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
ALI G +V AR + +++ + VV W +++ A G+ EA LF+ M
Sbjct: 47 ALILRRLSEGGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARVLFEVMPER 106
Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
+ +T ++L+ + E F+ M + + ++ + GR ED
Sbjct: 107 NI----VTCNAMLTGYVKCRRMNEAWTLFREM------PKNVVSWTVMLTALCDDGRSED 156
Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525
A++L MP E + W L+ + ++E A+ +A+
Sbjct: 157 AVELFDEMP-ERNVVSWNTLVTGLIRNGDMEKAKQVFDAM 195
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/583 (34%), Positives = 344/583 (59%), Gaps = 29/583 (4%)
Query: 1 MISGYVKRR-EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE-- 57
MI+ +K + ++ KA +LF ++P+++ VS+ MI+G++ + G +EA +L+ P
Sbjct: 118 MITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRA---GRFDEAEFLYAETPVKF 174
Query: 58 RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
RD V N ++SGY + G+ EA+R+F M + VVS ++M+ G+ + G + +A FDRM
Sbjct: 175 RDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRM 234
Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
R+ + +A++ G + G ++ + ++ R +G D+ NTL V +
Sbjct: 235 TERNVITWTAMIDGYFKAGFFEDGFGLFLRM--RQEG--DVKVNSNTLAVMFKACRDFVR 290
Query: 178 ARK------LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
R+ L ++P+ D GN S++ Y+K G + A+ +F M +
Sbjct: 291 YREGSQIHGLVSRMPLEFDLFLGN-----------SLMSMYSKLGYMGEAKAVFGVMKNK 339
Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
D+ SWN++I+G + + EA LF KMP D ++W M+ G++ G + ++ F MP
Sbjct: 340 DSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMP 399
Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
+K+ ++W +MI+ +N YE A+ F +M + P+ +TFSS+LS ++ + DL G+Q
Sbjct: 400 EKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQ 459
Query: 352 IHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
IH V K ++ D+ + N+L++MY +CG +A IF + N+VS+N MI G + +G
Sbjct: 460 IHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISE-PNIVSYNTMISGYSYNG 518
Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
F +AL+LF + S P +TF+++LSAC H G V+ G ++FKSM + Y IEP +H+
Sbjct: 519 FGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHY 578
Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
A +VD++GR G L+DA +LI MP +P VWG+LL A + H V+LA++AA+ L+++EP
Sbjct: 579 ACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEP 638
Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
+++TPYV+L +Y+ +G+ D + + + KS IKK G SW+
Sbjct: 639 DSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWI 681
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 146/317 (46%), Gaps = 30/317 (9%)
Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
I NS I +A+ G++ A IF QM R SW MIS Y M +A +F +MP
Sbjct: 50 IFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPV 109
Query: 262 PDTLTWNAMVSGYAQIGN---LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
T ++NAM++ A I N L A + F +P+KN VS+ +MI G ++ A L+
Sbjct: 110 RVTTSYNAMIT--AMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLY 167
Query: 319 IQMQVEGEKPDRHTFSSILSMSSGI--------VDLHLGMQIHQMVTKTVIPDVPINNAL 370
+ V+ R + +S + +S + V + GM + ++V+ + ++
Sbjct: 168 AETPVKF----RDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCS---------SM 214
Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS-FKVLP 429
+ Y + G IV+AR +F+ M +NV++W AMI G GF + LF MR V
Sbjct: 215 VHGYCKMGRIVDARSLFDRMT-ERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKV 273
Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
T + AC EG Q +V+ +E + SL+ + + G + +A +
Sbjct: 274 NSNTLAVMFKACRDFVRYREGSQ-IHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAV 332
Query: 490 IKGMPFEPDKAVWGALL 506
G+ D W +L+
Sbjct: 333 F-GVMKNKDSVSWNSLI 348
>sp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3
SV=1
Length = 695
Score = 336 bits (861), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 211/644 (32%), Positives = 329/644 (51%), Gaps = 87/644 (13%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
++ Y + +M AR LFDEMP R+ SWN MI GY++S G + FD+MPERD
Sbjct: 68 LLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKG---TSLRFFDMMPERDG 124
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP-G 119
+WN V+SG+AK GE+ A RLFN+MP ++VV+ N+++ G++ NG A+ F +
Sbjct: 125 YSWNVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELNFS 184
Query: 120 RDSASLSALVSGLIQNGELDEA----ARVLVKCGSRCDG--GEDLVRAY----------- 162
D+ +L+ ++ + L A++L+ G CD LV Y
Sbjct: 185 ADAITLTTVLKACAELEALKCGKQIHAQILIG-GVECDSKMNSSLVNVYAKCGDLRMASY 243
Query: 163 -------------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209
+ LI GY GRV E+R LFD+ + R ++ WNSMI
Sbjct: 244 MLEQIREPDDHSLSALISGYANCGRVNESRGLFDR------------KSNRCVILWNSMI 291
Query: 210 MCYAKAGDVVSAREIFEQM---LERDTFSWNTMISGYI---------------------- 244
Y + A +F +M D+ + +I+ I
Sbjct: 292 SGYIANNMKMEALVLFNEMRNETREDSRTLAAVINACIGLGFLETGKQMHCHACKFGLID 351
Query: 245 ------HVLDME-------EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
+LDM EA LF ++ DT+ N+M+ Y G ++ A F+R+
Sbjct: 352 DIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIE 411
Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
K+L+SWNSM G N ++ F QM D + SS++S + I L LG Q
Sbjct: 412 NKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQ 471
Query: 352 IHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
+ T + D ++++LI +Y +CG + R +F+ M + + V WN+MI G A++G
Sbjct: 472 VFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTM-VKSDEVPWNSMISGYATNG 530
Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
EA++LFK M + PT ITF+ VL+AC + GLVEEGR+ F+SM ++G P EHF
Sbjct: 531 QGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEHF 590
Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
+ +VD++ R G +E+A++L++ MPF+ D ++W ++L C + + + AAE ++++EP
Sbjct: 591 SCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSILRGCVANGYKAMGKKAAEKIIELEP 650
Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
ENS YV L ++A G W+ + VR LM+ NN+ K G SW D
Sbjct: 651 ENSVAYVQLSAIFATSGDWESSALVRKLMRENNVTKNPGSSWTD 694
Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 131/481 (27%), Positives = 233/481 (48%), Gaps = 55/481 (11%)
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
+ N ++ Y+++G+M A LF+ MP RN SWN MI G++ +G+ ++ FFD MP R
Sbjct: 63 IVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPER 122
Query: 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
D S + +VSG + GEL A R+ E V N+L+ GY G EEA +
Sbjct: 123 DGYSWNVVVSGFAKAGELSVARRLFNAM------PEKDVVTLNSLLHGYILNGYAEEALR 176
Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML----ERDTFSW 236
LF ++ F + ++ +++ A+ + ++I Q+L E D+
Sbjct: 177 LFKEL-----------NFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMN 225
Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
+++++ Y D+ AS + ++ PD + +A++SGYA G + + F R + ++
Sbjct: 226 SSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVI 285
Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
WNSMI+G N A+ LF +M+ E + D T +++++ G+ L G Q+H
Sbjct: 286 LWNSMISGYIANNMKMEALVLFNEMRNE-TREDSRTLAAVINACIGLGFLETGKQMHCHA 344
Query: 357 TK-TVIPDVPINNALITMYARCGAIVEARIIFEEMK-----LL----------------- 393
K +I D+ + + L+ MY++CG+ +EA +F E++ LL
Sbjct: 345 CKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAK 404
Query: 394 --------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
K+++SWN+M G + +G E LE F M + ++ SV+SACA
Sbjct: 405 RVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASIS 464
Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
+E G Q F + G++ +SL+D+ + G +E + M + D+ W ++
Sbjct: 465 SLELGEQVF-ARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTM-VKSDEVPWNSM 522
Query: 506 L 506
+
Sbjct: 523 I 523
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 161/320 (50%), Gaps = 36/320 (11%)
Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
++ N ++ Y+++G + AR +F++M +R+ FSWNTMI GY++ + + F MP
Sbjct: 62 VIVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPE 121
Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321
D +WN +VSG+A+ G L +A F MP+K++V+ NS++ G N E A++LF ++
Sbjct: 122 RDGYSWNVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFKEL 181
Query: 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAI 380
D T +++L + + L G QIH Q++ V D +N++L+ +YA+CG +
Sbjct: 182 NFSA---DAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDL 238
Query: 381 VEARIIFEEM------------------------------KLLKNVVSWNAMIGGCASHG 410
A + E++ K + V+ WN+MI G ++
Sbjct: 239 RMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANN 298
Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
EAL LF MR+ + T +V++AC G +E G+Q ++G+ I
Sbjct: 299 MKMEALVLFNEMRN-ETREDSRTLAAVINACIGLGFLETGKQ-MHCHACKFGLIDDIVVA 356
Query: 471 ASLVDIVGRHGRLEDAMDLI 490
++L+D+ + G +A L
Sbjct: 357 STLLDMYSKCGSPMEACKLF 376
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 335 bits (858), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 213/644 (33%), Positives = 331/644 (51%), Gaps = 110/644 (17%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
+++ Y K ARKLFDEMP R SWN ++S Y S RG ++ FD +P+RD
Sbjct: 55 LMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAY-SKRGD--MDSTCEFFDQLPQRDS 111
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSM------PAR------------------------- 89
V+W T+I GY G+ +A+R+ M P +
Sbjct: 112 VSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSF 171
Query: 90 --------NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
NV N++++ + + GD A FDRM RD +S +A+++ +Q G++D A
Sbjct: 172 IVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLA 231
Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI---------------- 185
+ R D+V +N++I G+ QRG A +F K+
Sbjct: 232 MAQFEQMAER-----DIV-TWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASV 285
Query: 186 ---PVNCDRGEGNVRFKRNIVS---------WNSMIMCYAKAGDVVSAREIFEQMLERD- 232
N ++ + +IV+ N++I Y++ G V +AR + EQ +D
Sbjct: 286 LSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345
Query: 233 -TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
+ ++ GYI + DM +A N+FV + D + W AM+ GY Q G+ A++ F+
Sbjct: 346 KIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFR--- 402
Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
SM+ G G++P+ +T +++LS++S + L G Q
Sbjct: 403 --------SMVGG--------------------GQRPNSYTLAAMLSVASSLASLSHGKQ 434
Query: 352 IHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
IH K+ I V ++NALITMYA+ G I A F+ ++ ++ VSW +MI A HG
Sbjct: 435 IHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHG 494
Query: 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470
A EALELF++M + P +IT++ V SAC HAGLV +GRQ+F M + I P + H+
Sbjct: 495 HAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHY 554
Query: 471 ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530
A +VD+ GR G L++A + I+ MP EPD WG+LL ACRVH N++L +VAAE L+ +EP
Sbjct: 555 ACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEP 614
Query: 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
ENS Y L N+Y+ G+W++A ++R MK +KK G+SW++
Sbjct: 615 ENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIE 658
>sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3
SV=2
Length = 768
Score = 328 bits (841), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 193/609 (31%), Positives = 329/609 (54%), Gaps = 60/609 (9%)
Query: 14 ARKLFDEMPQRDVVSWNVMI---------------------SG------------YISSR 40
A KLFDEMP+RD ++WN ++ SG + S
Sbjct: 42 ANKLFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSN 101
Query: 41 GSGFLEEAR---YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM 97
GF E + Y+ + E + N++I Y++ G++E + ++FNSM RN+ SWN++
Sbjct: 102 KEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSI 161
Query: 98 ISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCD 153
+S + + G V +AI D M D + ++L+SG G +A VL + +
Sbjct: 162 LSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRM--QIA 219
Query: 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
G + + ++L+ + G ++ + + I N + ++ ++I Y
Sbjct: 220 GLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRN--------QLWYDVYVETTLIDMYI 271
Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNA 269
K G + AR +F+ M ++ +WN+++SG + +++A L ++M PD +TWN+
Sbjct: 272 KTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNS 331
Query: 270 MVSGYAQIGNLELALDFFKRMPQK----NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
+ SGYA +G E ALD +M +K N+VSW ++ +GC N ++ A+K+FI+MQ EG
Sbjct: 332 LASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEG 391
Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEAR 384
P+ T S++L + + LH G ++H + K +I D + AL+ MY + G + A
Sbjct: 392 VGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAI 451
Query: 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444
IF +K K++ SWN M+ G A G E + F M + P ITF SVLS C ++
Sbjct: 452 EIFWGIKN-KSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNS 510
Query: 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA 504
GLV+EG ++F M + YGI P IEH + +VD++GR G L++A D I+ M +PD +WGA
Sbjct: 511 GLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGA 570
Query: 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
L +C++H ++ELA++A + L +EP NS Y+++ N+Y+++ RW+D +R LM++N +
Sbjct: 571 FLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRV 630
Query: 565 KKPTGYSWV 573
+ +SW+
Sbjct: 631 RVQDLWSWI 639
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 123/487 (25%), Positives = 203/487 (41%), Gaps = 100/487 (20%)
Query: 70 YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129
Y + + A +LF+ MP R+ ++WN ++ L++G+ A+E F M + + + +
Sbjct: 33 YGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTM 92
Query: 130 SGLIQ---NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186
L+Q N E R + R G E V N+LIV Y + G++E +RK+F+ +
Sbjct: 93 VKLLQVCSNKEGFAEGRQIHGYVLRL-GLESNVSMCNSLIVMYSRNGKLELSRKVFNSMK 151
Query: 187 VNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISG 242
RN+ SWNS++ Y K G V A + ++M L+ D +WN+++SG
Sbjct: 152 ------------DRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSG 199
Query: 243 Y---------IHVL----------DMEEASNLFVKMPHPDTLTWNAMVSG---------- 273
Y I VL S+L + P L + G
Sbjct: 200 YASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYD 259
Query: 274 ----------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
Y + G L A F M KN+V+WNS+++G + A L I+M+
Sbjct: 260 VYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEK 319
Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEA 383
EG KPD T+ N+L + YA G +A
Sbjct: 320 EGIKPDAITW----------------------------------NSLASGYATLGKPEKA 345
Query: 384 RIIFEEMK---LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
+ +MK + NVVSW A+ GC+ +G AL++F M+ V P T ++L
Sbjct: 346 LDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKI 405
Query: 441 CAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
L+ G++ H + + + +LVD+ G+ G L+ A+++ G+
Sbjct: 406 LGCLSLLHSGKEVHGFCLRKNLICDAYVA--TALVDMYGKSGDLQSAIEIFWGIK-NKSL 462
Query: 500 AVWGALL 506
A W +L
Sbjct: 463 ASWNCML 469
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 165/350 (47%), Gaps = 49/350 (14%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
+I Y+K + AR +FD M +++V+WN ++SG + L++A L M +
Sbjct: 266 LIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGL---SYACLLKDAEALMIRMEKEGI 322
Query: 59 --DCVTWNTVISGYAKTGEMEEALRLFNSMP----ARNVVSWNAMISGFLQNGDVANAIE 112
D +TWN++ SGYA G+ E+AL + M A NVVSW A+ SG +NG+ NA++
Sbjct: 323 KPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALK 382
Query: 113 FFDRMP----GRDSASLSALVS-----GLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN 163
F +M G ++A++S L+ L+ +G+ E ++ CD
Sbjct: 383 VFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGK--EVHGFCLRKNLICDA-----YVAT 435
Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG----DVV 219
L+ YG+ G ++ A ++F I +++ SWN M+M YA G +
Sbjct: 436 ALVDMYGKSGDLQSAIEIFWGIK------------NKSLASWNCMLMGYAMFGRGEEGIA 483
Query: 220 SAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGY 274
+ + E +E D ++ +++S + ++E F M P + MV
Sbjct: 484 AFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLL 543
Query: 275 AQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323
+ G L+ A DF + M K + W + ++ C+ ++D E A + ++QV
Sbjct: 544 GRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQV 593
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 113/227 (49%), Gaps = 3/227 (1%)
Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
+ + DT +A + Y + +L A F MP+++ ++WN ++ + ++E A++LF
Sbjct: 18 LDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELF 77
Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARC 377
+MQ G K T +L + S G QIH V + + +V + N+LI MY+R
Sbjct: 78 REMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRN 137
Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
G + +R +F MK +N+ SWN+++ G+ +A+ L M + P +T+ S+
Sbjct: 138 GKLELSRKVFNSMK-DRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSL 196
Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
LS A GL ++ K M G++P +SL+ V G L+
Sbjct: 197 LSGYASKGLSKDAIAVLKRM-QIAGLKPSTSSISSLLQAVAEPGHLK 242
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 326 bits (836), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 201/626 (32%), Positives = 332/626 (53%), Gaps = 71/626 (11%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ER 58
+I Y K E+ AR+LFDE+ + D ++ M+SGY +S G + AR +F+ P R
Sbjct: 55 LIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCAS---GDITLARGVFEKAPVCMR 111
Query: 59 DCVTWNTVISGYAKTGEMEEALRLFNSMPARNV----VSWNAMISGF------------- 101
D V +N +I+G++ + A+ LF M ++ ++++G
Sbjct: 112 DTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQF 171
Query: 102 ----LQNG-----DVANAI------------------EFFDRMPGRDSASLSALVSGLIQ 134
L++G V+NA+ + FD + +D S + +++G ++
Sbjct: 172 HAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVK 231
Query: 135 NGELDEAARVLVKCGSRCDGGEDLVR--AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
NG D +L +G +D ++ AYN +I GY RG +EA ++ ++ +
Sbjct: 232 NGYFDLGEELL-------EGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSS---- 280
Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW---NTMISGYIHVLDM 249
+ + ++ S+I A AG + +++ +L R+ FS+ N+++S Y
Sbjct: 281 ----GIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKF 336
Query: 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
+EA +F KMP D ++WNA++SGY G++ A FK M +KN++SW MI+G N
Sbjct: 337 DEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENG 396
Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINN 368
E +KLF M+ EG +P + FS + + + G Q H Q++ + N
Sbjct: 397 FGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGN 456
Query: 369 ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
ALITMYA+CG + EAR +F M L +V SWNA+I HG EA+++++ M +
Sbjct: 457 ALITMYAKCGVVEEARQVFRTMPCLDSV-SWNALIAALGQHGHGAEAVDVYEEMLKKGIR 515
Query: 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
P IT ++VL+AC+HAGLV++GR++F SM Y I P +H+A L+D++ R G+ DA
Sbjct: 516 PDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAES 575
Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548
+I+ +PF+P +W ALL CRVH N+EL +AA+ L + PE+ Y+LL NM+A G+
Sbjct: 576 VIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQ 635
Query: 549 WDDANEVRLLMKSNNIKKPTGYSWVD 574
W++ VR LM+ +KK SW++
Sbjct: 636 WEEVARVRKLMRDRGVKKEVACSWIE 661
Score = 146 bits (368), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 132/493 (26%), Positives = 228/493 (46%), Gaps = 37/493 (7%)
Query: 64 NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP--GRD 121
N +I Y K+ E+ A +LF+ + + ++ M+SG+ +GD+ A F++ P RD
Sbjct: 53 NRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRD 112
Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
+ +A+++G N D + + + C + +G + + +++ G E+
Sbjct: 113 TVMYNAMITGFSHNN--DGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQ 170
Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD----VVSAREIFEQMLERDTFSWN 237
F + G G + VS N+++ Y+K + SAR++F+++LE+D SW
Sbjct: 171 FHAAALK--SGAGYI----TSVS-NALVSVYSKCASSPSLLHSARKVFDEILEKDERSWT 223
Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNL- 295
TM++GY+ + L M L +NAM+SGY G + AL+ +RM +
Sbjct: 224 TMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIE 283
Query: 296 ---VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM-- 350
++ S+I C T A L + QV R FS + +V L+
Sbjct: 284 LDEFTYPSVIRACAT------AGLLQLGKQVHAYVLRREDFS--FHFDNSLVSLYYKCGK 335
Query: 351 --QIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
+ + K D+ NAL++ Y G I EA++IF+EMK KN++SW MI G A
Sbjct: 336 FDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMK-EKNILSWMIMISGLAE 394
Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
+GF E L+LF M+ P F + +CA G G+Q+ ++ + G + +
Sbjct: 395 NGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL-KIGFDSSLS 453
Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH-NNVELAQVAAEALMK 527
+L+ + + G +E+A + + MP D W AL+ A H + E V E L K
Sbjct: 454 AGNALITMYAKCGVVEEARQVFRTMPC-LDSVSWNALIAALGQHGHGAEAVDVYEEMLKK 512
Query: 528 -VEPENSTPYVLL 539
+ P+ T +L
Sbjct: 513 GIRPDRITLLTVL 525
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 325 bits (832), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 224/731 (30%), Positives = 356/731 (48%), Gaps = 157/731 (21%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS------------------ 42
MI+GY K +M KA F+ MP RDVVSWN M+SGY+ + S
Sbjct: 120 MINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFD 179
Query: 43 -----------GFLEEARYLFDIMP-------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
FLE+ I + D V + ++ YAK E+LR+F
Sbjct: 180 GRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQ 239
Query: 85 SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG--------------RDSASLSAL-V 129
+P +N VSW+A+I+G +QN ++ A++FF M R A+LS L +
Sbjct: 240 GIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRL 299
Query: 130 SGLIQNGEL--DEAARVLVKCGS-----RCDGGEDLV-----------RAYNTLIVGYGQ 171
G + L D AA +V+ + +CD +D ++YN +I GY Q
Sbjct: 300 GGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQ 359
Query: 172 RGRVEEARKLF----------DKIPVN-----CDRGEG------------NVRFKRNIVS 204
+A LF D+I ++ C +G ++
Sbjct: 360 EEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCV 419
Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP---- 260
N+ I Y K + A +F++M RD SWN +I+ + E LFV M
Sbjct: 420 ANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRI 479
Query: 261 HPDTLTWNAMVSG----------------------------------YAQIGNLELALD- 285
PD T+ +++ Y++ G +E A
Sbjct: 480 EPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKI 539
Query: 286 ---FFKR------------MPQKNL----VSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326
FF+R M K L VSWNS+I+G + E A LF +M G
Sbjct: 540 HSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGI 599
Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARI 385
PD+ T++++L + + LG QIH Q++ K + DV I + L+ MY++CG + ++R+
Sbjct: 600 TPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRL 659
Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
+FE+ L ++ V+WNAMI G A HG EA++LF+ M + P ++TFIS+L ACAH G
Sbjct: 660 MFEK-SLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMG 718
Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
L+++G ++F M +YG++P++ H++++VDI+G+ G+++ A++LI+ MPFE D +W L
Sbjct: 719 LIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTL 778
Query: 506 LGACRVH-NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
LG C +H NNVE+A+ A AL++++P++S+ Y LL N+YAD G W+ +++R M+ +
Sbjct: 779 LGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKL 838
Query: 565 KKPTGYSWVDF 575
KK G SWV+
Sbjct: 839 KKEPGCSWVEL 849
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 136/473 (28%), Positives = 226/473 (47%), Gaps = 39/473 (8%)
Query: 30 NVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPAR 89
N ++ Y +SR A +FD MP RD V+WN +I+GY+K+ +M +A FN MP R
Sbjct: 87 NCLLQVYTNSRD---FVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVR 143
Query: 90 NVVSWNAMISGFLQNGDVANAIEFFDRM-------PGRDSASLSALVSGLIQNGELDEAA 142
+VVSWN+M+SG+LQNG+ +IE F M GR A + + S L +
Sbjct: 144 DVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIH 203
Query: 143 RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202
++V+ G D V A + L+ Y + R E+ ++F IP ++N
Sbjct: 204 GIVVRVGCDTD-----VVAASALLDMYAKGKRFVESLRVFQGIP------------EKNS 246
Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH----VLDMEEASNLFVK 258
VSW+++I + + A + F++M + + ++ + + + ++ L
Sbjct: 247 VSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAH 306
Query: 259 MPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGA 314
D + A + YA+ N++ A F N S+N+MI G + A
Sbjct: 307 ALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKA 366
Query: 315 IKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITM 373
+ LF ++ G D + S + + + L G+QI+ + K+ + DV + NA I M
Sbjct: 367 LLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDM 426
Query: 374 YARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433
Y +C A+ EA +F+EM+ ++ VSWNA+I +G E L LF SM ++ P T
Sbjct: 427 YGKCQALAEAFRVFDEMR-RRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFT 485
Query: 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486
F S+L AC G + G + S+V G+ SL+D+ + G +E+A
Sbjct: 486 FGSILKACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEA 536
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 143/260 (55%), Gaps = 5/260 (1%)
Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
TF N ++ Y + D AS +F KMP D ++WN M++GY++ ++ A FF MP
Sbjct: 83 TFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPV 142
Query: 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352
+++VSWNSM++G N + +I++F+ M EG + D TF+ IL + S + D LGMQI
Sbjct: 143 RDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQI 202
Query: 353 HQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGF 411
H +V + DV +AL+ MYA+ VE+ +F+ + KN VSW+A+I GC +
Sbjct: 203 HGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIP-EKNSVSWSAIIAGCVQNNL 261
Query: 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHF 470
+ AL+ FK M+ + + SVL +CA + G Q H ++ +++ + +
Sbjct: 262 LSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVR-- 319
Query: 471 ASLVDIVGRHGRLEDAMDLI 490
+ +D+ + ++DA L
Sbjct: 320 TATLDMYAKCDNMQDAQILF 339
>sp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g25970
OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2
Length = 701
Score = 318 bits (815), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 201/632 (31%), Positives = 321/632 (50%), Gaps = 77/632 (12%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
++ Y+K + A LFDEMP+RD VSWN MISGY S G LE+A LF M
Sbjct: 41 ILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSC---GKLEDAWCLFTCMKRSGS 97
Query: 57 -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
E + ++++ YAK +E+A
Sbjct: 98 DVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFE 157
Query: 82 LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSA--------LVSGLI 133
F + N VSWNA+I+GF+Q D+ A M + + ++ A L+ +
Sbjct: 158 AFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPM 217
Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
L + ++K G + + + N +I Y G V +A+++FD G
Sbjct: 218 FCNLLKQVHAKVLKLGLQHE-----ITICNAMISSYADCGSVSDAKRVFD--------GL 264
Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMIS---GYIHV 246
G ++++SWNSMI ++K SA E+F QM +E D +++ ++S G H
Sbjct: 265 GG---SKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQ 321
Query: 247 LDMEEASNLFVKMPHPD-TLTWNAMVSGYAQI--GNLELALDFFKRMPQKNLVSWNSMIA 303
+ + + +K T NA++S Y Q G +E AL F+ + K+L+SWNS+I
Sbjct: 322 IFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIIT 381
Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIP 362
G E A+K F ++ K D + FS++L S + L LG QIH + TK+ +
Sbjct: 382 GFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVS 441
Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
+ + ++LI MY++CG I AR F+++ + V+WNAMI G A HG +L+LF M
Sbjct: 442 NEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQM 501
Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
+ V ++TF ++L+AC+H GL++EG + M Y I+PR+EH+A+ VD++GR G
Sbjct: 502 CNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGL 561
Query: 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542
+ A +LI+ MP PD V LG CR +E+A A L+++EPE+ YV L +M
Sbjct: 562 VNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHM 621
Query: 543 YADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
Y+D+ +W++ V+ +MK +KK G+SW++
Sbjct: 622 YSDLKKWEEKASVKKMMKERGVKKVPGWSWIE 653
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 125/281 (44%), Gaps = 31/281 (11%)
Query: 263 DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQ 322
D N ++ Y + G L A F MP+++ VSWN+MI+G + E A LF M+
Sbjct: 34 DIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMK 93
Query: 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIV 381
G D ++FS +L + + LG Q+H +V K +V + ++L+ MYA+C +
Sbjct: 94 RSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVE 153
Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR----------SFKVLPTY 431
+A F+E+ N VSWNA+I G A L M +F L T
Sbjct: 154 DAFEAFKEIS-EPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTL 212
Query: 432 I---TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
+ F ++L HA +++ G QH ++ N +++ G + DA
Sbjct: 213 LDDPMFCNLLKQ-VHAKVLKLGLQHEITICN------------AMISSYADCGSVSDAKR 259
Query: 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529
+ G+ D W +++ H EL + A E ++++
Sbjct: 260 VFDGLGGSKDLISWNSMIAGFSKH---ELKESAFELFIQMQ 297
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 210/630 (33%), Positives = 332/630 (52%), Gaps = 82/630 (13%)
Query: 2 ISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYIS-----------SR---------- 40
+ G+ R M A +LFDEM + D WNVMI G+ S SR
Sbjct: 71 LRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADT 130
Query: 41 -----------GSGFLEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEALRLFNS 85
G LEE + + ++ + D N++IS Y K G +A ++F
Sbjct: 131 FTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEE 190
Query: 86 MPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDSASLSAL-VSGLIQNGEL 138
MP R++VSWN+MISG+L GD +++ F M P R S ++SAL + + ++
Sbjct: 191 MPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFS-TMSALGACSHVYSPKM 249
Query: 139 DEAARVLVKCG---SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
+ + C SR + G+ +V +++ Y + G V A ++F+ +
Sbjct: 250 GKE----IHCHAVRSRIETGDVMV--MTSILDMYSKYGEVSYAERIFNGM---------- 293
Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
+RNIV+WN MI CYA+ G V A F++M E++ + + S +++ AS +
Sbjct: 294 --IQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITS-----INLLPASAI 346
Query: 256 FV-KMPH---------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
+ H P + A++ Y + G L+ A F RM +KN++SWNS+IA
Sbjct: 347 LEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAY 406
Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDV 364
N A++LF ++ PD T +SIL + + L G +IH + K+ +
Sbjct: 407 VQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNT 466
Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
I N+L+ MYA CG + +AR F + LLK+VVSWN++I A HGF ++ LF M +
Sbjct: 467 IILNSLVHMYAMCGDLEDARKCFNHI-LLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIA 525
Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
+V P TF S+L+AC+ +G+V+EG ++F+SM EYGI+P IEH+ ++D++GR G
Sbjct: 526 SRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFS 585
Query: 485 DAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544
A ++ MPF P +WG+LL A R H ++ +A+ AAE + K+E +N+ YVLL NMYA
Sbjct: 586 AAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYA 645
Query: 545 DVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
+ GRW+D N ++LLM+S I + + S V+
Sbjct: 646 EAGRWEDVNRIKLLMESKGISRTSSRSTVE 675
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 126/468 (26%), Positives = 216/468 (46%), Gaps = 84/468 (17%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
+IS Y+K A K+F+EMP+RD+VSWN MISGY+ + G GF + LF M
Sbjct: 171 LISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYL-ALGDGF--SSLMLFKEMLKCGF 227
Query: 56 -PER----------------------------------DCVTWNTVISGYAKTGEMEEAL 80
P+R D + +++ Y+K GE+ A
Sbjct: 228 KPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAE 287
Query: 81 RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDE 140
R+FN M RN+V+WN MI + +NG V +A F +M ++ L +I + L
Sbjct: 288 RIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQN-----GLQPDVITSINLLP 342
Query: 141 AARVLVKCGSRCDGGEDLVRAY-------NTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193
A+ +L R G + R + LI YG+ G+++ A +FD++
Sbjct: 343 ASAIL---EGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMA------- 392
Query: 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDM 249
++N++SWNS+I Y + G SA E+F+++ L D+ + +++ Y L +
Sbjct: 393 -----EKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSL 447
Query: 250 EEASNL---FVKMPH-PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
E + VK + +T+ N++V YA G+LE A F + K++VSWNS+I
Sbjct: 448 SEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAY 507
Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKT--VI 361
+ ++ LF +M P++ TF+S+L+ SG+VD G + + + + +
Sbjct: 508 AVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVD--EGWEYFESMKREYGID 565
Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
P + ++ + R G A+ EEM + W +++ +H
Sbjct: 566 PGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNH 613
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 317 bits (811), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 212/714 (29%), Positives = 346/714 (48%), Gaps = 143/714 (20%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
+I+ Y++ ++ AR LF EM DVV+WNVMISG+ RG + Y F++
Sbjct: 267 VINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGH-GKRGCETVA-IEYFFNMRKSSVK 324
Query: 61 VTWNTV--------------------------------------ISGYAKTGEMEEALRL 82
T +T+ +S Y+K +ME A ++
Sbjct: 325 STRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKV 384
Query: 83 FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGEL 138
F ++ +N V WNAMI G+ NG+ +E F M D + ++L+S + +L
Sbjct: 385 FEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDL 444
Query: 139 DEAAR----------------------VLVKCGSRCDGGEDLVR-------AYNTLIVGY 169
+ ++ + KCG+ D + R +NT+I Y
Sbjct: 445 EMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSY 504
Query: 170 GQRGRVEEARKLFDKIPV---------------NCDRGEGNVRFK------------RNI 202
Q EA LF ++ + C G + K R++
Sbjct: 505 VQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDL 564
Query: 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM--- 259
+ +S+I Y+K G + AR++F + E S N +I+GY ++EEA LF +M
Sbjct: 565 HTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTR 623
Query: 260 -PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ-------------------------- 292
+P +T+ +V + +L L F ++ +
Sbjct: 624 GVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTE 683
Query: 293 -----------KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
K++V W M++G N YE A+K + +M+ +G PD+ TF ++L + S
Sbjct: 684 ACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCS 743
Query: 342 GIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
+ L G IH ++ D +N LI MYA+CG + + +F+EM+ NVVSWN
Sbjct: 744 VLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWN 803
Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
++I G A +G+A +AL++F SMR ++P ITF+ VL+AC+HAG V +GR+ F+ M+ +
Sbjct: 804 SLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQ 863
Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
YGIE R++H A +VD++GR G L++A D I+ +PD +W +LLGACR+H + ++
Sbjct: 864 YGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEI 923
Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
+AE L+++EP+NS+ YVLL N+YA G W+ AN +R +M+ +KK GYSW+D
Sbjct: 924 SAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWID 977
Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 176/712 (24%), Positives = 300/712 (42%), Gaps = 147/712 (20%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
++ Y K ++ AR++F+ + + V W + SGY+ +G EEA +F+ M +
Sbjct: 201 LVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVK---AGLPEEAVLVFERMRDEGH 257
Query: 59 --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
D + + TVI+ Y + G++++A LF M + +VV+WN MISG + G AIE+F
Sbjct: 258 RPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFN 317
Query: 117 MPGRD----SASLSALVS--GLIQNGELD-----EAARV-----------LVKCGSRCDG 154
M ++L +++S G++ N +L EA ++ LV S+C+
Sbjct: 318 MRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEK 377
Query: 155 GEDLVRAY-----------NTLIVGYGQRGRVEEARKLF-------------------DK 184
E + + N +I GY G + +LF
Sbjct: 378 MEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLST 437
Query: 185 IPVNCDRGEGNV--------RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
+ D G+ + +N+ N+++ YAK G + AR+IFE+M +RD +W
Sbjct: 438 CAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTW 497
Query: 237 NTMISGYIHVLDMEEASNLFVKMP------------------------------------ 260
NT+I Y+ + EA +LF +M
Sbjct: 498 NTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVK 557
Query: 261 ---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
D T ++++ Y++ G ++ A F +P+ ++VS N++IAG N + E A+ L
Sbjct: 558 CGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQN-NLEEAVVL 616
Query: 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP--INNALITMYA 375
F +M G P TF++I+ L LG Q H +TK + +L+ MY
Sbjct: 617 FQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYM 676
Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
+ EA +F E+ K++V W M+ G + +GF EAL+ +K MR VLP TF+
Sbjct: 677 NSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFV 736
Query: 436 SVLSACAHAGLVEEGRQ------HFKSMVNEYGIEPRIEHFA------------------ 471
+VL C+ + EGR H ++E I+ +A
Sbjct: 737 TVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRR 796
Query: 472 -------SLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNVELAQVA 521
SL++ ++G EDA+ + M PD+ + +L AC V +
Sbjct: 797 SNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKI 856
Query: 522 AEALM-KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
E ++ + E +V M +GRW E +++ N+ KP W
Sbjct: 857 FEMMIGQYGIEARVDHVAC--MVDLLGRWGYLQEADDFIEAQNL-KPDARLW 905
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 151/549 (27%), Positives = 264/549 (48%), Gaps = 41/549 (7%)
Query: 5 YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSG-FLEEARYLFD--IMPERDCV 61
Y K +++ A K FD + ++DV +WN M+S Y S G L LF+ I P +
Sbjct: 105 YAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNK--F 161
Query: 62 TWNTVISGYAKTGEMEEALRLFNSMPA----RNVVSWNAMISGFLQNGDVANAIEFFDRM 117
T++ V+S A+ +E ++ SM RN A++ + + +++A F+ +
Sbjct: 162 TFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWI 221
Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
++ + L SG ++ G +EA VLV R +G A+ T+I Y + G++++
Sbjct: 222 VDPNTVCWTCLFSGYVKAGLPEEA--VLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKD 279
Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWN 237
AR LF ++ ++V+WN MI + K G A E F M + S
Sbjct: 280 ARLLFGEMS------------SPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTR 327
Query: 238 TMISGYIHVLDMEEASNLFVKMPHPDTLTW---------NAMVSGYAQIGNLELALDFFK 288
+ + + + + +L + + H + + +++VS Y++ +E A F+
Sbjct: 328 STLGSVLSAIGIVANLDLGL-VVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE 386
Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
+ +KN V WN+MI G N + ++LF+ M+ G D TF+S+LS + DL +
Sbjct: 387 ALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEM 446
Query: 349 GMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
G Q H ++ K + ++ + NAL+ MYA+CGA+ +AR IFE M N V+WN +IG
Sbjct: 447 GSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDN-VTWNTIIGSYV 505
Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI 467
+EA +LFK M ++ S L AC H + +G+Q + + G++ +
Sbjct: 506 QDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQ-VHCLSVKCGLDRDL 564
Query: 468 EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527
+SL+D+ + G ++DA + +P E AL+ A NN+E A V + ++
Sbjct: 565 HTGSSLIDMYSKCGIIKDARKVFSSLP-EWSVVSMNALI-AGYSQNNLEEAVVLFQEMLT 622
Query: 528 --VEPENST 534
V P T
Sbjct: 623 RGVNPSEIT 631
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 134/515 (26%), Positives = 238/515 (46%), Gaps = 84/515 (16%)
Query: 10 EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
++ K+RK+FDEMPQR ++ + + + S G E R N ++
Sbjct: 57 KLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGIDSEGR------------LGNAIVDL 104
Query: 70 YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGD----VANAIEFFDRMPGRDSASL 125
YAK ++ A + F+ + ++V +WN+M+S + G + + + F+ + +
Sbjct: 105 YAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTF 163
Query: 126 SALVSGLIQNGELDEAARV---LVKCG----SRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
S ++S + ++ ++ ++K G S C G L+ Y + R+ +A
Sbjct: 164 SIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGA---------LVDMYAKCDRISDA 214
Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTF 234
R++F+ I N V W + Y KAG A +FE+M + D
Sbjct: 215 RRVFEWI------------VDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHL 262
Query: 235 SWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN 294
++ T+I+ YI + +++A LF +M PD + WN M+SG+ +
Sbjct: 263 AFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGK------------------ 304
Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
GCET AI+ F M+ K R T S+LS + +L LG+ +H
Sbjct: 305 --------RGCETV-----AIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHA 351
Query: 355 MVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
K + ++ + ++L++MY++C + A +FE ++ KN V WNAMI G A +G +
Sbjct: 352 EAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALE-EKNDVFWNAMIRGYAHNGESH 410
Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
+ +ELF M+S TF S+LS CA + +E G Q F S++ + + + +L
Sbjct: 411 KVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQ-FHSIIIKKKLAKNLFVGNAL 469
Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
VD+ + G LEDA + + M + D W ++G+
Sbjct: 470 VDMYAKCGALEDARQIFERMC-DRDNVTWNTIIGS 503
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 315 bits (806), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 177/517 (34%), Positives = 274/517 (52%), Gaps = 50/517 (9%)
Query: 64 NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
N +I Y K G+ +A ++F+ M RN+ SWN M+SG++++G + A FD MP RD
Sbjct: 86 NHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERD-- 143
Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
V ++NT+++GY Q G + EA +
Sbjct: 144 -----------------------------------VVSWNTMVIGYAQDGNLHEALWFYK 168
Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS----WNTM 239
+ R G K N S+ ++ K+ + R+ Q+L S ++
Sbjct: 169 EF-----RRSG---IKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSI 220
Query: 240 ISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWN 299
I Y ME A F +M D W ++SGYA++G++E A F MP+KN VSW
Sbjct: 221 IDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWT 280
Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTK 358
++IAG A+ LF +M G KP++ TFSS L S+ I L G +IH M+
Sbjct: 281 ALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRT 340
Query: 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
V P+ + ++LI MY++ G++ + +F + V WN MI A HG +AL +
Sbjct: 341 NVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRM 400
Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478
M F+V P T + +L+AC+H+GLVEEG + F+SM ++GI P EH+A L+D++G
Sbjct: 401 LDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLG 460
Query: 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
R G ++ M I+ MPFEPDK +W A+LG CR+H N EL + AA+ L+K++PE+S PY+L
Sbjct: 461 RAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYIL 520
Query: 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
L ++YAD G+W+ ++R +MK + K SW++
Sbjct: 521 LSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEI 557
Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 121/453 (26%), Positives = 203/453 (44%), Gaps = 88/453 (19%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
+I Y+K + A K+FD+M R++ SWN M+SGY+ SG L AR +FD MPERD
Sbjct: 88 LIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVK---SGMLVRARVVFDSMPERDV 144
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAM-ISGFLQNGDVANAIEFFDRMPG 119
V+WNT++ GYA+ G + EAL + R+ + +N +G L + ++ + G
Sbjct: 145 VSWNTMVIGYAQDGNLHEALWFYKEF-RRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHG 203
Query: 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179
+ LV+G + N V++ C ++I Y + G++E A+
Sbjct: 204 Q------VLVAGFLSN--------VVLSC---------------SIIDAYAKCGQMESAK 234
Query: 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTM 239
+ FD++ V ++I W ++I YAK GD+ +A ++F +M E++ SW +
Sbjct: 235 RCFDEMTV------------KDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTAL 282
Query: 240 ISGYIHVLDMEEASNLFVKM---------------------------------------P 260
I+GY+ A +LF KM
Sbjct: 283 IAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNV 342
Query: 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFI 319
P+ + ++++ Y++ G+LE + F+ K + V WN+MI+ + A+++
Sbjct: 343 RPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLD 402
Query: 320 QMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARC 377
M +P+R T IL+ SG+V+ L V ++PD LI + R
Sbjct: 403 DMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRA 462
Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
G E EEM + WNA++G C HG
Sbjct: 463 GCFKELMRKIEEMPFEPDKHIWNAILGVCRIHG 495
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 137/342 (40%), Gaps = 65/342 (19%)
Query: 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA------------------ 303
P+TL N ++ Y + G A F +M +NL SWN+M++
Sbjct: 80 PNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSM 139
Query: 304 -------------GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
G + + A+ + + + G K + +F+ +L+ L L
Sbjct: 140 PERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNR 199
Query: 351 QIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM------------------- 390
Q H Q++ + +V ++ ++I YA+CG + A+ F+EM
Sbjct: 200 QAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLG 259
Query: 391 ------KLL-----KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
KL KN VSW A+I G G AL+LF+ M + V P TF S L
Sbjct: 260 DMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLC 319
Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
A A + G++ M+ + P +SL+D+ + G LE + + + + D
Sbjct: 320 ASASIASLRHGKEIHGYMIRT-NVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDC 378
Query: 500 AVWGALLGACRVHNNVELAQVAAEALMK--VEPENSTPYVLL 539
W ++ A H A + ++K V+P +T V+L
Sbjct: 379 VFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVIL 420
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 125/314 (39%), Gaps = 45/314 (14%)
Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358
S ++ T + A+ + +G + +S+L L G IH+ +
Sbjct: 15 QSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKI 74
Query: 359 TVI--PDVPINNALITMYARCGAIVEARIIFEEMKLL----------------------- 393
T P+ ++N LI MY +CG ++A +F++M L
Sbjct: 75 TGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARV 134
Query: 394 -------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
++VVSWN M+ G A G EAL +K R + +F +L+AC +
Sbjct: 135 VFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQ 194
Query: 447 VEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
++ RQ H + +V G + S++D + G++E A M + D +W L
Sbjct: 195 LQLNRQAHGQVLVA--GFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVK-DIHIWTTL 251
Query: 506 LGACRVHNNVELAQVAAEALMKVEPE-NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
+ ++E AAE L PE N + L Y G + A ++ M + +
Sbjct: 252 ISGYAKLGDME----AAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGV 307
Query: 565 KKPTGYSWVDFSPC 578
KP ++ FS C
Sbjct: 308 -KPEQFT---FSSC 317
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 314 bits (805), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 188/522 (36%), Positives = 292/522 (55%), Gaps = 30/522 (5%)
Query: 66 VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RD 121
+IS + + A+R+FN + NV N++I QN A F M D
Sbjct: 57 LISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFAD 116
Query: 122 SASLSALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGR--VE 176
+ + L+ L + + K G D + N LI Y + G V
Sbjct: 117 NFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSD-----IYVPNALIDCYSRCGGLGVR 171
Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
+A KLF+K+ +R+ VSWNSM+ KAG++ AR +F++M +RD SW
Sbjct: 172 DAMKLFEKMS------------ERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISW 219
Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP--QKN 294
NTM+ GY +M +A LF KMP +T++W+ MV GY++ G++E+A F +MP KN
Sbjct: 220 NTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKN 279
Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
+V+W +IAG + A +L QM G K D SIL+ + L LGM+IH
Sbjct: 280 VVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHS 339
Query: 355 MVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
++ ++ + + + NAL+ MYA+CG + +A +F ++ K++VSWN M+ G HG
Sbjct: 340 ILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPK-KDLVSWNTMLHGLGVHGHGK 398
Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
EA+ELF MR + P +TFI+VL +C HAGL++EG +F SM Y + P++EH+ L
Sbjct: 399 EAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCL 458
Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
VD++GR GRL++A+ +++ MP EP+ +WGALLGACR+HN V++A+ + L+K++P +
Sbjct: 459 VDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDP 518
Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
Y LL N+YA W+ ++R MKS ++KP+G S V+
Sbjct: 519 GNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVEL 560
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/447 (25%), Positives = 211/447 (47%), Gaps = 54/447 (12%)
Query: 25 DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
D+ N +I Y G G + +A LF+ M ERD V+WN+++ G K GE+ +A RLF+
Sbjct: 151 DIYVPNALIDCYSRCGGLG-VRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFD 209
Query: 85 SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144
MP R+++SWN M+ G+ + +++ A E F++MP R++ S S +V G + G++ E ARV
Sbjct: 210 EMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDM-EMARV 268
Query: 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204
+ + V + +I GY ++G ++EA +L D++ + K + +
Sbjct: 269 MF---DKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS--------GLKFDAAA 317
Query: 205 WNSMIMCYAKAGDVVSAREIFEQMLER-----DTFSWNTMISGYIHVLDMEEASNLFVKM 259
S++ ++G ++S +L+R + + N ++ Y ++++A ++F +
Sbjct: 318 VISILAACTESG-LLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDI 376
Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
P D ++WN M+ G G+ + A++ F RM +
Sbjct: 377 PKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRR--------------------------- 409
Query: 320 QMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARC 377
EG +PD+ TF ++L +G++D + ++P V L+ + R
Sbjct: 410 ----EGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRV 465
Query: 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437
G + EA + + M + NVV W A++G C H A E+ ++ K+ P S+
Sbjct: 466 GRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNL--VKLDPCDPGNYSL 523
Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIE 464
LS A EG +S + G+E
Sbjct: 524 LSNIYAAAEDWEGVADIRSKMKSMGVE 550
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 175/332 (52%), Gaps = 37/332 (11%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
M+ G VK E+ AR+LFDEMPQRD++SWN M+ GY R + +A LF+ MPER+
Sbjct: 191 MLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCRE---MSKAFELFEKMPERNT 247
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSM--PARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
V+W+T++ GY+K G+ME A +F+ M PA+NVV+W +I+G+ + G + A D+M
Sbjct: 248 VSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMV 307
Query: 119 GR----DSASLSALVSGLIQNGELDEAARV--LVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
D+A++ ++++ ++G L R+ ++K R + G + N L+ Y +
Sbjct: 308 ASGLKFDAAAVISILAACTESGLLSLGMRIHSILK---RSNLGSN-AYVLNALLDMYAKC 363
Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM---- 228
G +++A +F+ IP K+++VSWN+M+ G A E+F +M
Sbjct: 364 GNLKKAFDVFNDIP------------KKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREG 411
Query: 229 LERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELA 283
+ D ++ ++ H ++E + F M P + +V ++G L+ A
Sbjct: 412 IRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEA 471
Query: 284 LDFFKRMP-QKNLVSWNSMIAGCETNKDYEGA 314
+ + MP + N+V W +++ C + + + A
Sbjct: 472 IKVVQTMPMEPNVVIWGALLGACRMHNEVDIA 503
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 151/286 (52%), Gaps = 25/286 (8%)
Query: 14 ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
A KLF++M +RD VSWN M+ G + +G L +AR LFD MP+RD ++WNT++ GYA+
Sbjct: 173 AMKLFEKMSERDTVSWNSMLGGLVK---AGELRDARRLFDEMPQRDLISWNTMLDGYARC 229
Query: 74 GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM--PGRDSASLSALVSG 131
EM +A LF MP RN VSW+ M+ G+ + GD+ A FD+M P ++ + + +++G
Sbjct: 230 REMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAG 289
Query: 132 LIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVN 188
+ G L EA R+ +V G + D A +++ + G + ++ + +
Sbjct: 290 YAEKGLLKEADRLVDQMVASGLKFDAA-----AVISILAACTESGLLSLGMRIHSILKRS 344
Query: 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLD 248
N N+++ YAK G++ A ++F + ++D SWNTM+ G
Sbjct: 345 --------NLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGH 396
Query: 249 MEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRM 290
+EA LF +M PD +T+ A++ G ++ +D+F M
Sbjct: 397 GKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSM 442
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/396 (24%), Positives = 162/396 (40%), Gaps = 56/396 (14%)
Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
+A VS+R IFE+ L+ N +H + + + H D ++S
Sbjct: 8 RAPSWVSSRRIFEERLQDLPKCANLNQVKQLH-------AQIIRRNLHEDLHIAPKLISA 60
Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
+ LA+ F ++ + N+ NS+I N A +F +MQ G D T+
Sbjct: 61 LSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTY 120
Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCG--AIVEARIIFEEM 390
+L SG L + +H + K + D+ + NALI Y+RCG + +A +FE+M
Sbjct: 121 PFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKM 180
Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELF-------------------------KSMRSF 425
++ VSWN+M+GG G +A LF K+ F
Sbjct: 181 S-ERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELF 239
Query: 426 KVLP--TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483
+ +P +++ +++ + AG +E R F M + + ++ G L
Sbjct: 240 EKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLP---AKNVVTWTIIIAGYAEKGLL 296
Query: 484 EDAMDLI-----KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
++A L+ G+ F D A ++L AC + L + +++K S YVL
Sbjct: 297 KEADRLVDQMVASGLKF--DAAAVISILAACTESGLLSLG-MRIHSILKRSNLGSNAYVL 353
Query: 539 --LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
L +MYA G A +V N+I K SW
Sbjct: 354 NALLDMYAKCGNLKKAFDV-----FNDIPKKDLVSW 384
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 311 bits (798), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 198/616 (32%), Positives = 324/616 (52%), Gaps = 60/616 (9%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF----DIMP 56
+++ Y +A AR FD + RDV +WN+MISGY + S + LF + P
Sbjct: 92 LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTP 151
Query: 57 E--------RDCVT-----------------WNTVISG-----YAKTGEMEEALRLFNSM 86
+ + C T W+ ++ Y++ + A LF+ M
Sbjct: 152 DYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEM 211
Query: 87 PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLV 146
P R++ SWNAMISG+ Q+G+ A+ + + DS ++ +L+S + G+ + V +
Sbjct: 212 PVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRG--VTI 269
Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
S G E + N LI Y + GR+ + +K+FD++ V R+++SWN
Sbjct: 270 HSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYV------------RDLISWN 317
Query: 207 SMIMCYAKAGDVVSAREIFEQM-LERDTFSWNTMIS--------GYIHVLDMEEASNLFV 257
S+I Y + A +F++M L R T+IS G I + L
Sbjct: 318 SIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRK 377
Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317
D NA+V YA++G ++ A F +P +++SWN++I+G N AI++
Sbjct: 378 GWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEM 437
Query: 318 FIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYA 375
+ M+ EGE ++ T+ S+L S L GM++H +++ + DV + +L MY
Sbjct: 438 YNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYG 497
Query: 376 RCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFI 435
+CG + +A +F ++ + N V WN +I HG +A+ LFK M V P +ITF+
Sbjct: 498 KCGRLEDALSLFYQIPRV-NSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFV 556
Query: 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495
++LSAC+H+GLV+EG+ F+ M +YGI P ++H+ +VD+ GR G+LE A+ IK M
Sbjct: 557 TLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSL 616
Query: 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555
+PD ++WGALL ACRVH NV+L ++A+E L +VEPE+ +VLL NMYA G+W+ +E+
Sbjct: 617 QPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEI 676
Query: 556 RLLMKSNNIKKPTGYS 571
R + ++K G+S
Sbjct: 677 RSIAHGKGLRKTPGWS 692
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 51/294 (17%)
Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM 259
+N+ ++ Y G+V AR F+ + RD ++WN MISGY + E F
Sbjct: 84 QNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLF 143
Query: 260 PHPDTLT--------------------------------WNAMV--------SGYAQIGN 279
LT W+ V S Y +GN
Sbjct: 144 MLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGN 203
Query: 280 LELALDFFKRMPQKNLVSWNSMIAG-CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
+ F MP +++ SWN+MI+G C++ G K + + D T S+LS
Sbjct: 204 ARI---LFDEMPVRDMGSWNAMISGYCQS-----GNAKEALTLSNGLRAMDSVTVVSLLS 255
Query: 339 MSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397
+ D + G+ IH K + ++ ++N LI +YA G + + + +F+ M +++++
Sbjct: 256 ACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRM-YVRDLI 314
Query: 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
SWN++I + A+ LF+ MR ++ P +T IS+ S + G + R
Sbjct: 315 SWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACR 368
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 311 bits (797), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 204/654 (31%), Positives = 318/654 (48%), Gaps = 125/654 (19%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
+I Y++ ++ KLFD + Q+D V WNVM++GY G L+ F +M
Sbjct: 179 LIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKC---GALDSVIKGFSVMRMDQI 235
Query: 56 -PER---DCV------------------------------TWNTVISGYAKTGEMEEALR 81
P DCV N+++S Y+K G ++A +
Sbjct: 236 SPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASK 295
Query: 82 LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
LF M + V+WN MISG++Q+G + ++ FF M I +G L +A
Sbjct: 296 LFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEM---------------ISSGVLPDA 340
Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
+++L+ + +E ++ ++C ++ +
Sbjct: 341 I------------------TFSSLLPSVSKFENLEYCKQ------IHCYIMRHSISL--D 374
Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH---VLDMEEASNLFVK 258
I +++I Y K V A+ IF Q D + MISGY+H +D E VK
Sbjct: 375 IFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVK 434
Query: 259 MP-HPDTLTW-----------------------------------NAMVSGYAQIGNLEL 282
+ P+ +T A++ YA+ G + L
Sbjct: 435 VKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNL 494
Query: 283 ALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
A + F+R+ ++++VSWNSMI C + + AI +F QM V G D + S+ LS +
Sbjct: 495 AYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACAN 554
Query: 343 IVDLHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
+ G IH M+ ++ DV + LI MYA+CG + A +F+ MK KN+VSWN+
Sbjct: 555 LPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKE-KNIVSWNS 613
Query: 402 MIGGCASHGFATEALELFKSM-RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
+I C +HG ++L LF M + P ITF+ ++S+C H G V+EG + F+SM +
Sbjct: 614 IIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTED 673
Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
YGI+P+ EH+A +VD+ GR GRL +A + +K MPF PD VWG LLGACR+H NVELA+V
Sbjct: 674 YGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEV 733
Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
A+ LM ++P NS YVL+ N +A+ W+ +VR LMK ++K GYSW++
Sbjct: 734 ASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIE 787
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 115/474 (24%), Positives = 224/474 (47%), Gaps = 38/474 (8%)
Query: 59 DCVTWNTVISGYAKTGEMEEALRLFNSMPAR--NVVSWNAMISGFLQNGDVANAIEFFDR 116
D T ++ YA G + ++F + R ++ WN++IS F++NG + A+ F+ +
Sbjct: 69 DSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFK 128
Query: 117 M----PGRDSASLSALVSGLI--QNGE-LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
M D ++ LV + +N + +D + + G C+ + V + +LI Y
Sbjct: 129 MLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCN---EFVAS--SLIKAY 183
Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM- 228
+ G+++ KLFD++ +++ V WN M+ YAK G + S + F M
Sbjct: 184 LEYGKIDVPSKLFDRV------------LQKDCVIWNVMLNGYAKCGALDSVIKGFSVMR 231
Query: 229 ---LERDTFSWNTMISGYIHVLDMEEASNL----FVKMPHPDTLTWNAMVSGYAQIGNLE 281
+ + +++ ++S L ++ L V + N+++S Y++ G +
Sbjct: 232 MDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFD 291
Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
A F+ M + + V+WN MI+G + E ++ F +M G PD TFSS+L S
Sbjct: 292 DASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVS 351
Query: 342 GIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
+L QIH + + I D+ + +ALI Y +C + A+ IF + + +VV +
Sbjct: 352 KFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSV-DVVVFT 410
Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
AMI G +G ++LE+F+ + K+ P IT +S+L ++ GR+ + +
Sbjct: 411 AMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRE-LHGFIIK 469
Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
G + R +++D+ + GR+ A ++ + + + D W +++ C +N
Sbjct: 470 KGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWNSMITRCAQSDN 522
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 111/258 (43%), Gaps = 41/258 (15%)
Query: 346 LHLGMQIHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV-SWNAMI 403
L G Q+H ++ ++ D + ++ MYA CG+ + +F + L ++ + WN++I
Sbjct: 51 LRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSII 110
Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
+G +AL + M F V P TF ++ AC A +G V+ G+
Sbjct: 111 SSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACV-ALKNFKGIDFLSDTVSSLGM 169
Query: 464 EPRIEHFASLVDIVGRHGRLE---------------------------DAMD-LIKGMP- 494
+ +SL+ +G+++ A+D +IKG
Sbjct: 170 DCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSV 229
Query: 495 -----FEPDKAVWGALLGACRVHNNVELA-QVAAEALMK-VEPENSTPYVLLYNMYADVG 547
P+ + +L C ++L Q+ ++ V+ E S LL +MY+ G
Sbjct: 230 MRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLL-SMYSKCG 288
Query: 548 RWDDANEV-RLLMKSNNI 564
R+DDA+++ R++ +++ +
Sbjct: 289 RFDDASKLFRMMSRADTV 306
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 175/511 (34%), Positives = 278/511 (54%), Gaps = 47/511 (9%)
Query: 58 RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
+DC N I+ ++ A+ M NV +NA+ GF+ ++E + RM
Sbjct: 58 QDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRM 117
Query: 118 PGRDSASLSALV-SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
RDS S S+ S L++ A+R GE L + G+G +++
Sbjct: 118 L-RDSVSPSSYTYSSLVKASSF--ASRF----------GESL--QAHIWKFGFGFHVKIQ 162
Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW 236
++I Y+ G + AR++F++M ERD +W
Sbjct: 163 -----------------------------TTLIDFYSATGRIREARKVFDEMPERDDIAW 193
Query: 237 NTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296
TM+S Y VLDM+ A++L +M + T N +++GY +GNLE A F +MP K+++
Sbjct: 194 TTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDII 253
Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMV 356
SW +MI G NK Y AI +F +M EG PD T S+++S + + L +G ++H
Sbjct: 254 SWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYT 313
Query: 357 TKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
+ + DV I +AL+ MY++CG++ A ++F + KN+ WN++I G A+HGFA EA
Sbjct: 314 LQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK-KNLFCWNSIIEGLAAHGFAQEA 372
Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
L++F M V P +TF+SV +AC HAGLV+EGR+ ++SM+++Y I +EH+ +V
Sbjct: 373 LKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVH 432
Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
+ + G + +A++LI M FEP+ +WGALL CR+H N+ +A++A LM +EP NS
Sbjct: 433 LFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGY 492
Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566
Y LL +MYA+ RW D E+R M+ I+K
Sbjct: 493 YFLLVSMYAEQNRWRDVAEIRGRMRELGIEK 523
Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 155/327 (47%), Gaps = 37/327 (11%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
+I Y + +ARK+FDEMP+RD ++W M+S Y R ++ A L + M E++
Sbjct: 165 LIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAY---RRVLDMDSANSLANQMSEKNE 221
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120
T N +I+GY G +E+A LFN MP ++++SW MI G+ QN AI F +M
Sbjct: 222 ATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEE 281
Query: 121 ----DSASLSALVSGLIQNGELD---EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG 173
D ++S ++S G L+ E ++ G D V + L+ Y + G
Sbjct: 282 GIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLD-----VYIGSALVDMYSKCG 336
Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----L 229
+E A +F +P K+N+ WNS+I A G A ++F +M +
Sbjct: 337 SLERALLVFFNLP------------KKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESV 384
Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN-----AMVSGYAQIGNLELAL 284
+ + ++ ++ + H ++E ++ M ++ N MV +++ G + AL
Sbjct: 385 KPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEAL 444
Query: 285 DFFKRMP-QKNLVSWNSMIAGCETNKD 310
+ M + N V W +++ GC +K+
Sbjct: 445 ELIGNMEFEPNAVIWGALLDGCRIHKN 471
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 310 bits (794), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 189/593 (31%), Positives = 312/593 (52%), Gaps = 41/593 (6%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
++ Y + AR++FD +PQ ++ SWN ++ Y +G + E F+ +P+RD
Sbjct: 47 IVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAY---SKAGLISEMESTFEKLPDRDG 103
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSM-----PARNVVSWNAMISGFLQNGDVANAIEFFD 115
VTWN +I GY+ +G + A++ +N+M V+ M+ NG V+ +
Sbjct: 104 VTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHG 163
Query: 116 RMP--GRDSASL--SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
++ G +S L S L+ G + +A +V R YN+L+ G
Sbjct: 164 QVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRN------TVMYNSLMGGLLA 217
Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--- 228
G +E+A +LF RG +++ VSW +MI A+ G A E F +M
Sbjct: 218 CGMIEDALQLF--------RG-----MEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQ 264
Query: 229 -LERDTFSWNTMI---SGYIHVLDMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELA 283
L+ D + + +++ G + + ++ ++ D + +A++ Y + L A
Sbjct: 265 GLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYA 324
Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
F RM QKN+VSW +M+ G E A+K+F+ MQ G PD +T +S + +
Sbjct: 325 KTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANV 384
Query: 344 VDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
L G Q H + +T +I V ++N+L+T+Y +CG I ++ +F EM + ++ VSW AM
Sbjct: 385 SSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNV-RDAVSWTAM 443
Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
+ A G A E ++LF M + P +T V+SAC+ AGLVE+G+++FK M +EYG
Sbjct: 444 VSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYG 503
Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
I P I H++ ++D+ R GRLE+AM I GMPF PD W LL ACR N+E+ + AA
Sbjct: 504 IVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAA 563
Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575
E+L++++P + Y LL ++YA G+WD ++R M+ N+KK G SW+ +
Sbjct: 564 ESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKW 616
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 161/389 (41%), Gaps = 65/389 (16%)
Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
+TF +N ++ Y + A +F ++P P+ +WN ++ Y++ G + F+++P
Sbjct: 40 ETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLP 99
Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVE-GEKPDRHTFSSILSMSSGIVDLHLGM 350
++ V+WN +I G + A+K + M + R T ++L +SS + LG
Sbjct: 100 DRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGK 159
Query: 351 QIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIF---------------------- 387
QIH V K + + + L+ MYA G I +A+ +F
Sbjct: 160 QIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACG 219
Query: 388 ---EEMKLL----KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440
+ ++L K+ VSW AMI G A +G A EA+E F+ M+ + F SVL A
Sbjct: 220 MIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPA 279
Query: 441 CAHAGLVEEGRQ------------------------------HFKSMVNEYGIEPRIEHF 470
C G + EG+Q H+ V + + + +
Sbjct: 280 CGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSW 339
Query: 471 ASLVDIVGRHGRLEDAMDLIKGMP---FEPDKAVWGALLGAC-RVHNNVELAQVAAEALM 526
++V G+ GR E+A+ + M +PD G + AC V + E +Q +A+
Sbjct: 340 TAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAIT 399
Query: 527 KVEPENSTPYVLLYNMYADVGRWDDANEV 555
T L +Y G DD+ +
Sbjct: 400 SGLIHYVTVSNSLVTLYGKCGDIDDSTRL 428
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 308 bits (790), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 183/553 (33%), Positives = 297/553 (53%), Gaps = 40/553 (7%)
Query: 43 GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
G L AR F E + ++N ++ YAK ++ A +LF+ +P + VS+N +ISG+
Sbjct: 57 GRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYA 116
Query: 103 QNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158
+ A+ F RM D +LS L++ +L + + C S G +
Sbjct: 117 DARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLIKQ----LHCFSVSGGFDSY 172
Query: 159 VRAYNTLIVGYGQRGRVEEARKLF---DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
N + Y + G + EA +F D++ R+ VSWNSMI+ Y +
Sbjct: 173 SSVNNAFVTYYSKGGLLREAVSVFYGMDEL--------------RDEVSWNSMIVAYGQH 218
Query: 216 GDVVSAREIFEQMLER----DTFSWNTMISGYI---HVLDMEEASNLFVKMP-HPDTLTW 267
+ A ++++M+ + D F+ ++++ H++ + +K H ++
Sbjct: 219 KEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVG 278
Query: 268 NAMVSGYAQIGNLELALD---FFKRMPQKNLVSWNSMIAGCETNKDY-EGAIKLFIQMQV 323
+ ++ Y++ G + D F+ + +LV WN+MI+G N++ E A+K F QMQ
Sbjct: 279 SGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQR 338
Query: 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD--VPINNALITMYARCGAIV 381
G +PD +F + S S + QIH + K+ IP + +NNALI++Y + G +
Sbjct: 339 IGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQ 398
Query: 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441
+AR +F+ M L N VS+N MI G A HG TEAL L++ M + P ITF++VLSAC
Sbjct: 399 DARWVFDRMPEL-NAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSAC 457
Query: 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501
AH G V+EG+++F +M + IEP EH++ ++D++GR G+LE+A I MP++P
Sbjct: 458 AHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVA 517
Query: 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561
W ALLGACR H N+ LA+ AA LM ++P +TPYV+L NMYAD +W++ VR M+
Sbjct: 518 WAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRG 577
Query: 562 NNIKKPTGYSWVD 574
I+K G SW++
Sbjct: 578 KRIRKKPGCSWIE 590
Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 154/348 (44%), Gaps = 26/348 (7%)
Query: 226 EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD 285
+ ++ T+ N ++ Y + A F P+ ++N +V YA+ + +A
Sbjct: 36 KSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQ 95
Query: 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD 345
F +PQ + VS+N++I+G ++ A+ LF +M+ G + D T S +++ VD
Sbjct: 96 LFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVD 155
Query: 346 LHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIG 404
L Q+H V+ +NNA +T Y++ G + EA +F M L++ VSWN+MI
Sbjct: 156 --LIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIV 213
Query: 405 GCASHGFATEALELFKSM--RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
H +AL L+K M + FK+ T SVL+A + GRQ F + + G
Sbjct: 214 AYGQHKEGAKALALYKEMIFKGFKI--DMFTLASVLNALTSLDHLIGGRQ-FHGKLIKAG 270
Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP--FEPDKAVWGALLGACRVHNNVELAQV 520
+ L+D + G + D K PD VW ++ + N EL++
Sbjct: 271 FHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSM--NEELSEE 328
Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPT 568
A ++ +++ P DD + V + +N+ P+
Sbjct: 329 AVKSFRQMQRIGHRP--------------DDCSFVCVTSACSNLSSPS 362
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 102/399 (25%), Positives = 164/399 (41%), Gaps = 110/399 (27%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRG------------------- 41
++ Y K ++ AR+LFDE+PQ D VS+N +ISGY +R
Sbjct: 80 IVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVD 139
Query: 42 ----SGFLEEARYLFDIMPERDCVTW-----------NTVISGYAKTGEMEEALRLFNSM 86
SG + D++ + C + N ++ Y+K G + EA+ +F M
Sbjct: 140 GFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGM 199
Query: 87 PA-RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS--------------ASLSALVSG 131
R+ VSWN+MI + Q+ + A A+ + M + SL L+ G
Sbjct: 200 DELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGG 259
Query: 132 LIQNGELDEAA------------RVLVKCGSRCDG------------GEDLVRAYNTLIV 167
+G+L +A KCG CDG DLV +NT+I
Sbjct: 260 RQFHGKLIKAGFHQNSHVGSGLIDFYSKCGG-CDGMYDSEKVFQEILSPDLV-VWNTMIS 317
Query: 168 GYGQRGRV-EEARKLFDKI------------------------PVNCDRGEGNVRFKRNI 202
GY + EEA K F ++ P C + G + K +I
Sbjct: 318 GYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHG-LAIKSHI 376
Query: 203 VS-----WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
S N++I Y K+G++ AR +F++M E + S+N MI GY EA L+
Sbjct: 377 PSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQ 436
Query: 258 KMPH----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
+M P+ +T+ A++S A G ++ ++F M +
Sbjct: 437 RMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKE 475
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 58/243 (23%)
Query: 11 MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERD---------CV 61
M + K+F E+ D+V WN MISGY S EEA F M CV
Sbjct: 294 MYDSEKVFQEILSPDLVVWNTMISGY--SMNEELSEEAVKSFRQMQRIGHRPDDCSFVCV 351
Query: 62 TW-------------------------------NTVISGYAKTGEMEEALRLFNSMPARN 90
T N +IS Y K+G +++A +F+ MP N
Sbjct: 352 TSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELN 411
Query: 91 VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA----SLSALVSGLIQNGELDEAARVLV 146
VS+N MI G+ Q+G A+ + RM A + A++S G++DE
Sbjct: 412 AVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYF- 470
Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
E Y+ +I G+ G++EEA + D +P +K V+W
Sbjct: 471 NTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMP-----------YKPGSVAWA 519
Query: 207 SMI 209
+++
Sbjct: 520 ALL 522
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
+IS Y K + AR +FD MP+ + VS+N MI GY + G G EA L+ I
Sbjct: 387 LISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGY-AQHGHG--TEALLLYQRMLDSGI 443
Query: 55 MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVAN 109
P + +T+ V+S A G+++E FN+M + ++ MI + G +
Sbjct: 444 APNK--ITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEE 501
Query: 110 AIEFFDRMPGR-DSASLSALVSGLIQNGELDEAAR 143
A F D MP + S + +AL+ ++ + A R
Sbjct: 502 AERFIDAMPYKPGSVAWAALLGACRKHKNMALAER 536
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 306 bits (783), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 188/660 (28%), Positives = 323/660 (48%), Gaps = 102/660 (15%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
++ ++R +++ ARK++DEMP ++ VS N MISG++ + G + AR LFD MP+R
Sbjct: 54 IVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT---GDVSSARDLFDAMPDRTV 110
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSM------------------PARN------------ 90
VTW ++ YA+ +EA +LF M P N
Sbjct: 111 VTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVH 170
Query: 91 -------------VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGE 137
+ N ++ + + + A F+ +P +DS + + L++G ++G
Sbjct: 171 AFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGL 230
Query: 138 LDEAARVLVKCGSRCDGGEDLV---------------------------------RAYNT 164
E+ + +K D N
Sbjct: 231 YTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQ 290
Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
++ Y + RV E R LFD++P + + VS+N +I Y++A ++
Sbjct: 291 ILDFYSKHDRVLETRMLFDEMP------------ELDFVSYNVVISSYSQADQYEASLHF 338
Query: 225 FEQM----LERDTFSWNTMISGYIHVLDMEEASNLFVK--MPHPDTL--TWNAMVSGYAQ 276
F +M +R F + TM+S ++ ++ L + + D++ N++V YA+
Sbjct: 339 FREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAK 398
Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
E A FK +PQ+ VSW ++I+G + +KLF +M+ + D+ TF+++
Sbjct: 399 CEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATV 458
Query: 337 LSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
L S+ L LG Q+H + ++ + +V + L+ MYA+CG+I +A +FEEM +N
Sbjct: 459 LKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRN 517
Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
VSWNA+I A +G A+ F M + P ++ + VL+AC+H G VE+G ++F+
Sbjct: 518 AVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQ 577
Query: 456 SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNV 515
+M YGI P+ +H+A ++D++GR+GR +A L+ MPFEPD+ +W ++L ACR+H N
Sbjct: 578 AMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQ 637
Query: 516 ELAQVAAEALMKVEP-ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
LA+ AAE L +E ++ YV + N+YA G W+ +V+ M+ IKK YSWV+
Sbjct: 638 SLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVE 697
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 132/282 (46%), Gaps = 10/282 (3%)
Query: 219 VSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIG 278
V AR I + + DT N ++ + + A ++ +MPH +T++ N M+SG+ + G
Sbjct: 35 VDAR-IIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTG 93
Query: 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM--QVEGEKPDRHTFSSI 336
++ A D F MP + +V+W ++ N ++ A KLF QM PD TF+++
Sbjct: 94 DVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTL 153
Query: 337 LSMSSGIVDLHLGMQIHQMVTK---TVIPDVPINNALITMYARCGAIVEARIIFEEMKLL 393
L + V + Q+H K P + ++N L+ Y + A ++FEE+
Sbjct: 154 LPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIP-E 212
Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ- 452
K+ V++N +I G G TE++ LF MR P+ TF VL A G+Q
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQL 272
Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
H S+ + + + + ++D +H R+ + L MP
Sbjct: 273 HALSVTTGFSRDASVGN--QILDFYSKHDRVLETRMLFDEMP 312
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 305 bits (782), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 210/638 (32%), Positives = 322/638 (50%), Gaps = 86/638 (13%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF-------D 53
++S + K ++ ARK+F++M R+ V+ N ++ G + + + EEA LF D
Sbjct: 249 LVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQK---WGEEATKLFMDMNSMID 305
Query: 54 IMPERDCVTW-------------------------------------NTVISGYAKTGEM 76
+ PE + N +++ YAK G +
Sbjct: 306 VSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSI 365
Query: 77 EEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS-ALVSGLIQN 135
+A R+F M ++ VSWN+MI+G QNG A+E + M D S L+S L
Sbjct: 366 ADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSC 425
Query: 136 GELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
L A G G DL V N L+ Y + G + E RK+F +P
Sbjct: 426 ASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP-------- 477
Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE------------QMLERDTFSWNTMISG 242
+ + VSWNS+I A+ S R + E Q L R TFS
Sbjct: 478 ----EHDQVSWNSIIGALAR-----SERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVS 528
Query: 243 YIHVLDM-EEASNLFVKMPHPD-TLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWN 299
+ ++ ++ L +K D T NA+++ Y + G ++ F RM ++ + V+WN
Sbjct: 529 SLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWN 588
Query: 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359
SMI+G N+ A+ L M G++ D ++++LS + + L GM++H +
Sbjct: 589 SMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRA 648
Query: 360 VI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
+ DV + +AL+ MY++CG + A F M + +N SWN+MI G A HG EAL+L
Sbjct: 649 CLESDVVVGSALVDMYSKCGRLDYALRFFNTMPV-RNSYSWNSMISGYARHGQGEEALKL 707
Query: 419 FKSMR-SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
F++M+ + P ++TF+ VLSAC+HAGL+EEG +HF+SM + YG+ PRIEHF+ + D++
Sbjct: 708 FETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVL 767
Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN--NVELAQVAAEALMKVEPENSTP 535
GR G L+ D I+ MP +P+ +W +LGAC N EL + AAE L ++EPEN+
Sbjct: 768 GRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVN 827
Query: 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
YVLL NMYA GRW+D + R MK ++KK GYSWV
Sbjct: 828 YVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWV 865
Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 152/511 (29%), Positives = 237/511 (46%), Gaps = 64/511 (12%)
Query: 16 KLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGE 75
+L+ +DV N +I+ Y+ + S AR +FD MP R+CV+W ++SGY++ GE
Sbjct: 26 RLYKNRLDKDVYLCNNLINAYLETGDS---VSARKVFDEMPLRNCVSWACIVSGYSRNGE 82
Query: 76 MEEALRLFNSMPARNVVS-WNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQ 134
+EAL M + S A +S ++ + F R LS V ++
Sbjct: 83 HKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVS 142
Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
N VL+ +C G VGY A F I V
Sbjct: 143 N--------VLISMYWKCIGS-----------VGY--------ALCAFGDIEV------- 168
Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML---ERDT-FSWNTMISGYIHVL--D 248
+N VSWNS+I Y++AGD SA IF M R T +++ ++++ + D
Sbjct: 169 -----KNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPD 223
Query: 249 MEEASNLFVKMPHPDTLT----WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
+ + + LT + +VS +A+ G+L A F +M +N V+ N ++ G
Sbjct: 224 VRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVG 283
Query: 305 CETNKDYEGAIKLFIQMQVEGE-KPDRHT--FSSILSMS-SGIVDLHLGMQIHQMVTKTV 360
K E A KLF+ M + P+ + SS S + V L G ++H V T
Sbjct: 284 LVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTG 343
Query: 361 IPD--VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALEL 418
+ D V I N L+ MYA+CG+I +AR +F M K+ VSWN+MI G +G EA+E
Sbjct: 344 LVDFMVGIGNGLVNMYAKCGSIADARRVFYFMT-DKDSVSWNSMITGLDQNGCFIEAVER 402
Query: 419 FKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIV 477
+KSMR +LP T IS LS+CA + G+Q H +S+ + GI+ + +L+ +
Sbjct: 403 YKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESL--KLGIDLNVSVSNALMTLY 460
Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
G L + + MP E D+ W +++GA
Sbjct: 461 AETGYLNECRKIFSSMP-EHDQVSWNSIIGA 490
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 135/498 (27%), Positives = 218/498 (43%), Gaps = 36/498 (7%)
Query: 59 DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
D + ++S +AK+G + A ++FN M RN V+ N ++ G ++ A + F M
Sbjct: 242 DLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMN 301
Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGG-------EDLVRAYNTLIVGYGQ 171
S + V L E A V +K G G + +V N L+ Y +
Sbjct: 302 SMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAK 361
Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
G + +AR++F + ++ VSWNSMI + G + A E ++ M
Sbjct: 362 CGSIADARRVFYFMT------------DKDSVSWNSMITGLDQNGCFIEAVERYKSMRRH 409
Query: 232 DTFSWN-TMISGYIHVLDMEEASNLFVKMPHPDTLTW---------NAMVSGYAQIGNLE 281
D + T+IS ++ A + H ++L NA+++ YA+ G L
Sbjct: 410 DILPGSFTLISSLSSCASLKWAK--LGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLN 467
Query: 282 LALDFFKRMPQKNLVSWNSMI-AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
F MP+ + VSWNS+I A + + A+ F+ Q G+K +R TFSS+LS
Sbjct: 468 ECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAV 527
Query: 341 SGIVDLHLGMQIHQMVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
S + LG QIH + K I D NALI Y +CG + IF M ++ V+W
Sbjct: 528 SSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTW 587
Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459
N+MI G + +AL+L M + +VLSA A +E G + V
Sbjct: 588 NSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVR 647
Query: 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQ 519
+E + ++LVD+ + GRL+ A+ MP + W +++ H E A
Sbjct: 648 AC-LESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYS-WNSMISGYARHGQGEEAL 705
Query: 520 VAAEALMKVEPENSTPYV 537
E MK++ + +V
Sbjct: 706 KLFET-MKLDGQTPPDHV 722
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 138/300 (46%), Gaps = 11/300 (3%)
Query: 253 SNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYE 312
S L+ D N +++ Y + G+ A F MP +N VSW +++G N +++
Sbjct: 25 SRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHK 84
Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSS--GIVDLHLGMQIHQMVTK-TVIPDVPINNA 369
A+ M EG +++ F S+L G V + G QIH ++ K + D ++N
Sbjct: 85 EALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNV 144
Query: 370 LITMYARC-GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428
LI+MY +C G++ A F +++ +KN VSWN++I + G A +F SM+
Sbjct: 145 LISMYWKCIGSVGYALCAFGDIE-VKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSR 203
Query: 429 PTYITFIS-VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
PT TF S V +AC+ + + + G+ + + LV + G L A
Sbjct: 204 PTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYAR 263
Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE--ALMKVEPENSTPYVLLYNMYAD 545
+ M + G ++G R E ++ + +++ V PE+ YV+L + + +
Sbjct: 264 KVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPES---YVILLSSFPE 320
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 303 bits (777), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 195/621 (31%), Positives = 320/621 (51%), Gaps = 78/621 (12%)
Query: 14 ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF--------DIMPE-------- 57
ARKLF+EMPQ ++S+N++I Y+ G +A +F +P+
Sbjct: 68 ARKLFEEMPQSSLLSYNIVIRMYVRE---GLYHDAISVFIRMVSEGVKCVPDGYTYPFVA 124
Query: 58 -------------------------RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVV 92
RD N +++ Y G++E A +F+ M R+V+
Sbjct: 125 KAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVI 184
Query: 93 SWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSAL--VSGLIQNGELDEAARVLV 146
SWN MISG+ +NG + +A+ FD M D A++ ++ V G +++ E+ LV
Sbjct: 185 SWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLV 244
Query: 147 KCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206
+ R D + N L+ Y + GR++EAR +FD++ +R++++W
Sbjct: 245 E-EKRLG---DKIEVKNALVNMYLKCGRMDEARFVFDRME------------RRDVITWT 288
Query: 207 SMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEASNL----FVK 258
MI Y + GDV +A E+ M + + + +++S L + + L +
Sbjct: 289 CMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQ 348
Query: 259 MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF 318
+ D + +++S YA+ ++L F + + W+++IAGC N+ A+ LF
Sbjct: 349 QVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLF 408
Query: 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARC 377
+M+ E +P+ T +S+L + + DL M IH +TKT + + L+ +Y++C
Sbjct: 409 KRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKC 468
Query: 378 GAIVEARIIF---EEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
G + A IF +E K+VV W A+I G HG AL++F M V P ITF
Sbjct: 469 GTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITF 528
Query: 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP 494
S L+AC+H+GLVEEG F+ M+ Y R H+ +VD++GR GRL++A +LI +P
Sbjct: 529 TSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIP 588
Query: 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANE 554
FEP VWGALL AC H NV+L ++AA L ++EPEN+ YVLL N+YA +GRW D +
Sbjct: 589 FEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEK 648
Query: 555 VRLLMKSNNIKKPTGYSWVDF 575
VR +M++ ++K G+S ++
Sbjct: 649 VRSMMENVGLRKKPGHSTIEI 669
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 105/466 (22%), Positives = 205/466 (43%), Gaps = 74/466 (15%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
+++ Y+ ++ AR +FD M RDV+SWN MISGY +G++ +A +FD M
Sbjct: 158 LLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYR---NGYMNDALMMFDWMVNESV 214
Query: 57 ERDCVTW-----------------------------------NTVISGYAKTGEMEEALR 81
+ D T N +++ Y K G M+EA
Sbjct: 215 DLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARF 274
Query: 82 LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
+F+ M R+V++W MI+G+ ++GDV NA+E M ++ ++++LVS +
Sbjct: 275 VFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALK 334
Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
+++ + L R D++ +LI Y + RV+ ++F
Sbjct: 335 VND-GKCLHGWAVRQQVYSDII-IETSLISMYAKCKRVDLCFRVFSGAS----------- 381
Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEEAS 253
K + W+++I + V A +F++M +E + + N+++ Y + D+ +A
Sbjct: 382 -KYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAM 440
Query: 254 NLFVKMPHPDTLT----WNAMVSGYAQIGNLELALDFF----KRMPQKNLVSWNSMIAGC 305
N+ + ++ +V Y++ G LE A F ++ K++V W ++I+G
Sbjct: 441 NIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGY 500
Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS--SGIVDLHLGMQIHQMVTKTVIPD 363
+ D A+++F++M G P+ TF+S L+ SG+V+ L + + +
Sbjct: 501 GMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLAR 560
Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
++ + R G + EA + + W A++ C +H
Sbjct: 561 SNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTH 606
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 127/248 (51%), Gaps = 6/248 (2%)
Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK--PDRH 331
YA G++ A F+ MPQ +L+S+N +I Y AI +FI+M EG K PD +
Sbjct: 59 YALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGY 118
Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEM 390
T+ + + + + LG+ +H + ++ D + NAL+ MY G + AR +F+ M
Sbjct: 119 TYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVM 178
Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
K ++V+SWN MI G +G+ +AL +F M + V + T +S+L C H +E G
Sbjct: 179 K-NRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMG 237
Query: 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACR 510
R K +V E + +IE +LV++ + GR+++A + M D W ++
Sbjct: 238 RNVHK-LVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRME-RRDVITWTCMINGYT 295
Query: 511 VHNNVELA 518
+VE A
Sbjct: 296 EDGDVENA 303
Score = 37.4 bits (85), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 53/234 (22%)
Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS- 424
I + L YA CG I AR +FEEM +++S+N +I G +A+ +F M S
Sbjct: 51 ILSTLSVTYALCGHITYARKLFEEMP-QSSLLSYNIVIRMYVREGLYHDAISVFIRMVSE 109
Query: 425 -FKVLPTYITFISVLSACAH-----AGLVEEGR-------------QHFKSMVNEYGIEP 465
K +P T+ V A GLV GR +M +G
Sbjct: 110 GVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFG--- 166
Query: 466 RIEHFASLVDIVG---------------RHGRLEDAMDLIKGMPFEP---DKAVWGALLG 507
++E + D++ R+G + DA+ + M E D A ++L
Sbjct: 167 KVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLP 226
Query: 508 ACRVHNNVELA----QVAAEALM--KVEPENSTPYVLLYNMYADVGRWDDANEV 555
C ++E+ ++ E + K+E +N+ L NMY GR D+A V
Sbjct: 227 VCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNA-----LVNMYLKCGRMDEARFV 275
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 303 bits (777), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 263/531 (49%), Gaps = 72/531 (13%)
Query: 45 LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
L AR L PE D +NT++ GY+++ E ++ +F M + V ++ F
Sbjct: 55 LPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAF--- 111
Query: 105 GDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT 164
V A+E F + AL GL E + T
Sbjct: 112 --VIKAVENFRSLRTGFQMHCQALKHGL-----------------------ESHLFVGTT 146
Query: 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
LI YG G VE ARK+FD++ + N+V+WN++I + DV AREI
Sbjct: 147 LIGMYGGCGCVEFARKVFDEM------------HQPNLVAWNAVITACFRGNDVAGAREI 194
Query: 225 FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284
F++ML R+ SWN M++GYI ++E A +F +MPH D ++W+ M+ G A G+ +
Sbjct: 195 FDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESF 254
Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
+F+ ++Q G P+ + + +LS S
Sbjct: 255 LYFR-------------------------------ELQRAGMSPNEVSLTGVLSACSQSG 283
Query: 345 DLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
G +H V K V +NNALI MY+RCG + AR++FE M+ + +VSW +MI
Sbjct: 284 SFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMI 343
Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463
G A HG EA+ LF M ++ V P I+FIS+L AC+HAGL+EEG +F M Y I
Sbjct: 344 AGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHI 403
Query: 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE 523
EP IEH+ +VD+ GR G+L+ A D I MP P VW LLGAC H N+ELA+ +
Sbjct: 404 EPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQ 463
Query: 524 ALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
L +++P NS VLL N YA G+W D +R M IKK T +S V+
Sbjct: 464 RLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVE 514
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 155/315 (49%), Gaps = 30/315 (9%)
Query: 14 ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
ARK+FDEM Q ++V+WN +I+ RG+ + AR +FD M R+ +WN +++GY K
Sbjct: 160 ARKVFDEMHQPNLVAWNAVITACF--RGND-VAGAREIFDKMLVRNHTSWNVMLAGYIKA 216
Query: 74 GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALV 129
GE+E A R+F+ MP R+ VSW+ MI G NG + +F + + SL+ ++
Sbjct: 217 GELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVL 276
Query: 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189
S Q+G E ++L + G +V N LI Y + G V AR +F+
Sbjct: 277 SACSQSGSF-EFGKILHGFVEKA-GYSWIVSVNNALIDMYSRCGNVPMARLVFE------ 328
Query: 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIH 245
++ KR IVSW SMI A G A +F +M + D S+ +++ H
Sbjct: 329 -----GMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSH 383
Query: 246 VLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWN 299
+EE + F +M P+ + MV Y + G L+ A DF +MP + W
Sbjct: 384 AGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWR 443
Query: 300 SMIAGCETNKDYEGA 314
+++ C ++ + E A
Sbjct: 444 TLLGACSSHGNIELA 458
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 118/282 (41%), Gaps = 71/282 (25%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDI------ 54
M++GY+K E+ A+++F EMP RD VSW+ MI G I+ GS F E Y ++
Sbjct: 209 MLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVG-IAHNGS-FNESFLYFRELQRAGMS 266
Query: 55 ---------------------------MPERDCVTW-----NTVISGYAKTGEMEEALRL 82
E+ +W N +I Y++ G + A +
Sbjct: 267 PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLV 326
Query: 83 FNSMP-ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALV-----SGL 132
F M R +VSW +MI+G +G A+ F+ M D S +L+ +GL
Sbjct: 327 FEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGL 386
Query: 133 IQNGE--LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCD 190
I+ GE E RV E + Y ++ YG+ G++++A ++P+
Sbjct: 387 IEEGEDYFSEMKRVY--------HIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPI--- 435
Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232
+ W +++ + G++ A ++ +++ E D
Sbjct: 436 --------PPTAIVWRTLLGACSSHGNIELAEQVKQRLNELD 469
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 303 bits (775), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 172/484 (35%), Positives = 260/484 (53%), Gaps = 51/484 (10%)
Query: 95 NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
N +I +L+ G + + + FDRMP RDS S
Sbjct: 160 NCLIGLYLKCGCLGLSRQMFDRMPKRDSVS------------------------------ 189
Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
YN++I GY + G + AR+LFD +P+ +N++SWNSMI YA+
Sbjct: 190 -------YNSMIDGYVKCGLIVSARELFDLMPME----------MKNLISWNSMISGYAQ 232
Query: 215 AGDVVS-AREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
D V A ++F M E+D SWN+MI GY+ +E+A LF MP D +TW M+ G
Sbjct: 233 TSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDG 292
Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK-PDRHT 332
YA++G + A F +MP +++V++NSM+AG NK + A+++F M+ E PD T
Sbjct: 293 YAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTT 352
Query: 333 FSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
+L + + L + +H +V K + ALI MY++CG+I A ++FE ++
Sbjct: 353 LVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIE 412
Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
K++ WNAMIGG A HG A ++ + + P ITF+ VL+AC+H+GLV+EG
Sbjct: 413 N-KSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGL 471
Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
F+ M ++ IEPR++H+ +VDI+ R G +E A +LI+ MP EP+ +W L AC
Sbjct: 472 LCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSH 531
Query: 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
H E ++ A+ L+ N + YVLL NMYA G W D VR +MK I+K G S
Sbjct: 532 HKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCS 591
Query: 572 WVDF 575
W++
Sbjct: 592 WIEL 595
Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 113/423 (26%), Positives = 207/423 (48%), Gaps = 66/423 (15%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ER 58
+I Y+K + +R++FD MP+RD VS+N MI GY+ G + AR LFD+MP +
Sbjct: 162 LIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVK---CGLIVSARELFDLMPMEMK 218
Query: 59 DCVTWNTVISGYAKTGE-MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117
+ ++WN++ISGYA+T + ++ A +LF MP ++++SWN+MI G++++G + +A FD M
Sbjct: 219 NLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVM 278
Query: 118 PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
P RD V + T+I GY + G V
Sbjct: 279 PRRD-------------------------------------VVTWATMIDGYAKLGFVHH 301
Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-----LERD 232
A+ LFD++P R++V++NSM+ Y + + A EIF M L D
Sbjct: 302 AKTLFDQMP------------HRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPD 349
Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWN----AMVSGYAQIGNLELALDFFK 288
+ ++ + + +A ++ + + A++ Y++ G+++ A+ F+
Sbjct: 350 DTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFE 409
Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
+ K++ WN+MI G + E A + +Q++ KPD TF +L+ S +
Sbjct: 410 GIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKE 469
Query: 349 GMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
G+ +++ + + P + ++ + +R G+I A+ + EEM + N V W + C
Sbjct: 470 GLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTAC 529
Query: 407 ASH 409
+ H
Sbjct: 530 SHH 532
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 173/359 (48%), Gaps = 62/359 (17%)
Query: 1 MISGYVKRREMAKARKLFDEMPQ--RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER 58
MI GYVK + AR+LFD MP ++++SWN MISGY ++ S ++ A LF MPE+
Sbjct: 193 MIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGY--AQTSDGVDIASKLFADMPEK 250
Query: 59 DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118
D ++WN++I GY K G +E+A LF+ MP R+VV+W MI G+ + G V +A FD+MP
Sbjct: 251 DLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMP 310
Query: 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIV---GYGQRGRV 175
RD + +++++G +QN EA + S + L+ TL++ Q GR+
Sbjct: 311 HRDVVAYNSMMAGYVQNKYHMEALEIF----SDMEKESHLLPDDTTLVIVLPAIAQLGRL 366
Query: 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235
+A + I G + ++I Y+K G + A +FE + +
Sbjct: 367 SKAIDMHLYIVEKQFYLGGKLGV--------ALIDMYSKCGSIQHAMLVFEGIENKSIDH 418
Query: 236 WNTMISGY-IHVLDMEEASNLFVKMPH----PDTLT------------------------ 266
WN MI G IH L E A ++ +++ PD +T
Sbjct: 419 WNAMIGGLAIHGLG-ESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELM 477
Query: 267 ------------WNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYE 312
+ MV ++ G++ELA + + MP + N V W + + C +K++E
Sbjct: 478 RRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFE 536
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 11/211 (5%)
Query: 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357
WN++I KD A+ L M G D+ + S +L S + + GMQIH +
Sbjct: 89 WNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLK 148
Query: 358 KTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEAL 416
KT + D+ + N LI +Y +CG + +R +F+ M ++ VS+N+MI G G A
Sbjct: 149 KTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMP-KRDSVSYNSMIDGYVKCGLIVSAR 207
Query: 417 ELFKSM-RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
ELF M K L ++ + IS + + V+ + F M E + + S++D
Sbjct: 208 ELFDLMPMEMKNLISWNSMISGYAQTSDG--VDIASKLFADMP-----EKDLISWNSMID 260
Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
+HGR+EDA L MP D W ++
Sbjct: 261 GYVKHGRIEDAKGLFDVMP-RRDVVTWATMI 290
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 90/385 (23%), Positives = 162/385 (42%), Gaps = 101/385 (26%)
Query: 232 DTFSWNTMISGYIHVLDMEEASNL---------------------------FVK---MPH 261
D F WN +I + H D +A L FVK H
Sbjct: 85 DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 144
Query: 262 ---------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ-------------------- 292
D N ++ Y + G L L+ F RMP+
Sbjct: 145 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIV 204
Query: 293 -------------KNLVSWNSMIAG-CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338
KNL+SWNSMI+G +T+ + A KLF M + D +++S++
Sbjct: 205 SARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADM----PEKDLISWNSMID 260
Query: 339 --MSSGIVDLHLGMQIHQMVTKTVIP--DVPINNALITMYARCGAIVEARIIFEEMKLLK 394
+ G ++ G+ V+P DV +I YA+ G + A+ +F++M +
Sbjct: 261 GYVKHGRIEDAKGLF-------DVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMP-HR 312
Query: 395 NVVSWNAMIGGCASHGFATEALELFKSM-RSFKVLPTYITFISVLSACAHAGLVEEG-RQ 452
+VV++N+M+ G + + EALE+F M + +LP T + VL A A G + +
Sbjct: 313 DVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDM 372
Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV--WGALLGACR 510
H + ++ + ++ +L+D+ + G ++ AM + +G+ +K++ W A++G
Sbjct: 373 HLYIVEKQFYLGGKLG--VALIDMYSKCGSIQHAMLVFEGI---ENKSIDHWNAMIGGLA 427
Query: 511 VHNNVELAQVAAEALMKVEPENSTP 535
+H L + A + L+++E + P
Sbjct: 428 IHG---LGESAFDMLLQIERLSLKP 449
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 302 bits (774), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 203/627 (32%), Positives = 325/627 (51%), Gaps = 74/627 (11%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
++ Y+K RK+FDEM +R+VV+W +ISGY +R S +E LF M
Sbjct: 134 LVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGY--ARNS-MNDEVLTLFMRMQNEGT 190
Query: 57 -----------------------------------ERDCVTWNTVISGYAKTGEMEEALR 81
++ N++I+ Y K G + +A
Sbjct: 191 QPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARI 250
Query: 82 LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFD-------RMPGRDSASLSALVSGLIQ 134
LF+ ++VV+WN+MISG+ NG A+ F R+ AS+ L + L +
Sbjct: 251 LFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKE 310
Query: 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG 194
++ +VK G D +R L+V Y + + +A +LF +I G
Sbjct: 311 LRFTEQLHCSVVKYGFLFDQN---IR--TALMVAYSKCTAMLDALRLFKEI--------G 357
Query: 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME 250
V N+VSW +MI + + A ++F +M + + F+++ +++ + V+
Sbjct: 358 CVG---NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA-LPVISPS 413
Query: 251 EASNLFVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
E VK + + T A++ Y ++G +E A F + K++V+W++M+AG
Sbjct: 414 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 473
Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI-VDLHLGMQIHQMVTKTVI-PDVPIN 367
+ E AIK+F ++ G KP+ TFSSIL++ + + G Q H K+ + + ++
Sbjct: 474 ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 533
Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
+AL+TMYA+ G I A +F+ + K++VSWN+MI G A HG A +AL++FK M+ KV
Sbjct: 534 SALLTMYAKKGNIESAEEVFKRQRE-KDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 592
Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAM 487
+TFI V +AC HAGLVEEG ++F MV + I P EH + +VD+ R G+LE AM
Sbjct: 593 KMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAM 652
Query: 488 DLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547
+I+ MP +W +L ACRVH EL ++AAE ++ ++PE+S YVLL NMYA+ G
Sbjct: 653 KVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESG 712
Query: 548 RWDDANEVRLLMKSNNIKKPTGYSWVD 574
W + +VR LM N+KK GYSW++
Sbjct: 713 DWQERAKVRKLMNERNVKKEPGYSWIE 739
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/455 (23%), Positives = 202/455 (44%), Gaps = 68/455 (14%)
Query: 100 GFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGS-----RCDG 154
G + + + NA FD+ PGRD S +L+ G ++G EA R+ + C
Sbjct: 36 GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95
Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDK-IPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213
+++ TL +LF + + C + F ++ S++ Y
Sbjct: 96 FSSVLKVSATL------------CDELFGRQLHCQCIK----FGFLDDVSVGTSLVDTYM 139
Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW-- 267
K + R++F++M ER+ +W T+ISGY +E LF++M P++ T+
Sbjct: 140 KGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAA 199
Query: 268 ---------------------------------NAMVSGYAQIGNLELALDFFKRMPQKN 294
N++++ Y + GN+ A F + K+
Sbjct: 200 ALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS 259
Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
+V+WNSMI+G N A+ +F M++ + +F+S++ + + + +L Q+H
Sbjct: 260 VVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHC 319
Query: 355 MVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
V K + D I AL+ Y++C A+++A +F+E+ + NVVSW AMI G +
Sbjct: 320 SVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKE 379
Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
EA++LF M+ V P T+ +L+A ++ H + + Y + +L
Sbjct: 380 EAVDLFSEMKRKGVRPNEFTYSVILTALP---VISPSEVHAQVVKTNYERSSTVG--TAL 434
Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
+D + G++E+A + G+ + D W A+L
Sbjct: 435 LDAYVKLGKVEEAAKVFSGID-DKDIVAWSAMLAG 468
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/430 (24%), Positives = 201/430 (46%), Gaps = 69/430 (16%)
Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----L 229
R+ A LFDK P R+ S+ S++ +++ G A+ +F + +
Sbjct: 42 RLYNAHNLFDKSP------------GRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGM 89
Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH---------PDTLTWNAMVSGYAQIGNL 280
E D +++++ + D LF + H D ++V Y + N
Sbjct: 90 EMDCSIFSSVLKVSATLCD-----ELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNF 144
Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
+ F M ++N+V+W ++I+G N + + LF++MQ EG +P+ TF++ L +
Sbjct: 145 KDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVL 204
Query: 341 SGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSW 399
+ G+Q+H +V K + +P++N+LI +Y +CG + +ARI+F++ + +K+VV+W
Sbjct: 205 AEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTE-VKSVVTW 263
Query: 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA-----------HAGLVE 448
N+MI G A++G EAL +F SMR V + +F SV+ CA H +V+
Sbjct: 264 NSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVK 323
Query: 449 EG---RQHFKS-----------------MVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488
G Q+ ++ + E G + + +++ ++ E+A+D
Sbjct: 324 YGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVD 383
Query: 489 LIKGMP---FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
L M P++ + +L A V + ++V A+ + +ST L + Y
Sbjct: 384 LFSEMKRKGVRPNEFTYSVILTALPV---ISPSEVHAQVVKTNYERSSTVGTALLDAYVK 440
Query: 546 VGRWDDANEV 555
+G+ ++A +V
Sbjct: 441 LGKVEEAAKV 450
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 301 bits (771), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 178/488 (36%), Positives = 285/488 (58%), Gaps = 22/488 (4%)
Query: 96 AMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGG 155
+M +++ G + +A + FDRM +D + SAL+ + G L+E R+L + S G
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMES--SGI 213
Query: 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215
E + ++N ++ G+ + G +EA +F KI ++ F + V+ +S++ +
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIH--------HLGFCPDQVTVSSVLPSVGDS 265
Query: 216 GDVVSAREI----FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMV 271
+ R I +Q L +D + MI Y + +LF + + NA +
Sbjct: 266 EMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYI 325
Query: 272 SGYAQIGNLELALDFFKRMPQK----NLVSWNSMIAGCETN-KDYEGAIKLFIQMQVEGE 326
+G ++ G ++ AL+ F+ ++ N+VSW S+IAGC N KD E A++LF +MQV G
Sbjct: 326 TGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIE-ALELFREMQVAGV 384
Query: 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARI 385
KP+ T S+L I L G H + ++ +V + +ALI MYA+CG I ++I
Sbjct: 385 KPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQI 444
Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
+F M KN+V WN+++ G + HG A E + +F+S+ ++ P +I+F S+LSAC G
Sbjct: 445 VFNMMPT-KNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVG 503
Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
L +EG ++FK M EYGI+PR+EH++ +V+++GR G+L++A DLIK MPFEPD VWGAL
Sbjct: 504 LTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGAL 563
Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
L +CR+ NNV+LA++AAE L +EPEN YVLL N+YA G W + + +R M+S +K
Sbjct: 564 LNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLK 623
Query: 566 KPTGYSWV 573
K G SW+
Sbjct: 624 KNPGCSWI 631
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/428 (22%), Positives = 188/428 (43%), Gaps = 39/428 (9%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---- 56
M Y++ M ARK+FD M +DVV+ + ++ Y G LEE + M
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYAR---KGCLEEVVRILSEMESSGI 213
Query: 57 ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
E + V+WN ++SG+ ++G +EA+ +F + +S L + + +
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273
Query: 117 MPG--------RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168
+ G +D +SA++ ++G + + + G N I G
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAG------VCNAYITG 327
Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
+ G V++A ++F+ + N+VSW S+I A+ G + A E+F +M
Sbjct: 328 LSRNGLVDKALEMFELFKEQ--------TMELNVVSWTSIIAGCAQNGKDIEALELFREM 379
Query: 229 ----LERDTFSWNTMI--SGYIHVLDMEEASNLFVKMPH--PDTLTWNAMVSGYAQIGNL 280
++ + + +M+ G I L +++ F H + +A++ YA+ G +
Sbjct: 380 QVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRI 439
Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
L+ F MP KNLV WNS++ G + + + +F + KPD +F+S+LS
Sbjct: 440 NLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSAC 499
Query: 341 SGIVDLHLGMQIHQMVTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS 398
+ G + +M+++ + P + + ++ + R G + EA + +EM +
Sbjct: 500 GQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCV 559
Query: 399 WNAMIGGC 406
W A++ C
Sbjct: 560 WGALLNSC 567
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 149/361 (41%), Gaps = 65/361 (18%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPER-- 58
MI Y K + LF++ + N I+G SR +G +++A +F++ E+
Sbjct: 293 MIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGL--SR-NGLVDKALEMFELFKEQTM 349
Query: 59 --DCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
+ V+W ++I+G A+ G+ EAL LF M V + I L
Sbjct: 350 ELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML-------------- 395
Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVE 176
P +++AL G +G A RV + D V + LI Y + GR+
Sbjct: 396 -PA--CGNIAALGHGRSTHG---FAVRVHLL---------DNVHVGSALIDMYAKCGRIN 440
Query: 177 EARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERD 232
++ +F+ +P +N+V WNS++ ++ G IFE + L+ D
Sbjct: 441 LSQIVFNMMPT------------KNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPD 488
Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFF 287
S+ +++S V +E F M P ++ MV+ + G L+ A D
Sbjct: 489 FISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLI 548
Query: 288 KRMP-QKNLVSWNSMIAGCETNKDYE----GAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342
K MP + + W +++ C + + A KLF +E E P + S + + G
Sbjct: 549 KEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLF---HLEPENPGTYVLLSNIYAAKG 605
Query: 343 I 343
+
Sbjct: 606 M 606
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 301 bits (771), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 193/601 (32%), Positives = 313/601 (52%), Gaps = 51/601 (8%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDV------VSWNVMISG-----YISSRGSGFLEEAR 49
M+ G+ K ++ KA + F M DV ++ + + G + G L ++
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165
Query: 50 YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVAN 109
+ D+ + + YAK ++ EA ++F+ MP R++VSWN +++G+ QNG
Sbjct: 166 FSLDLF------AMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARM 219
Query: 110 AIEFFDRMPGRD-SASLSALVSGLIQNGELDEAARVLVKCGSRC------DGGEDLVRAY 162
A+E M + S +VS L L L+ G G + LV
Sbjct: 220 ALEMVKSMCEENLKPSFITIVSVLPAVSALR-----LISVGKEIHGYAMRSGFDSLVNIS 274
Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
L+ Y + G +E AR+LFD + +RN+VSWNSMI Y + + A
Sbjct: 275 TALVDMYAKCGSLETARQLFDGM------------LERNVVSWNSMIDAYVQNENPKEAM 322
Query: 223 EIFEQMLERDTFSWNTMISGYIHVL----DMEEA---SNLFVKMPHPDTLTW-NAMVSGY 274
IF++ML+ + + G +H D+E L V++ ++ N+++S Y
Sbjct: 323 LIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMY 382
Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
+ ++ A F ++ + LVSWN+MI G N A+ F QM+ KPD T+
Sbjct: 383 CKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYV 442
Query: 335 SILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLL 393
S+++ + + H IH +V ++ + +V + AL+ MYA+CGAI+ AR+IF+ M
Sbjct: 443 SVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSE- 501
Query: 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQH 453
++V +WNAMI G +HGF ALELF+ M+ + P +TF+SV+SAC+H+GLVE G +
Sbjct: 502 RHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKC 561
Query: 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHN 513
F M Y IE ++H+ ++VD++GR GRL +A D I MP +P V+GA+LGAC++H
Sbjct: 562 FYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHK 621
Query: 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
NV A+ AAE L ++ P++ +VLL N+Y W+ +VR+ M ++K G S V
Sbjct: 622 NVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMV 681
Query: 574 D 574
+
Sbjct: 682 E 682
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 130/463 (28%), Positives = 229/463 (49%), Gaps = 36/463 (7%)
Query: 66 VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
++S + + G ++EA R+F + ++ V ++ M+ GF + D+ A++FF RM D +
Sbjct: 75 LVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPV 134
Query: 126 SALVSGLIQ----NGEL---DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178
+ L++ EL E +LVK G D + A L Y + +V EA
Sbjct: 135 VYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLD-----LFAMTGLENMYAKCRQVNEA 189
Query: 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF-SWN 237
RK+FD++P +R++VSWN+++ Y++ G A E+ + M E + S+
Sbjct: 190 RKVFDRMP------------ERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFI 237
Query: 238 TMIS-----GYIHVLDMEEASNLFVKMPHPDTLT--WNAMVSGYAQIGNLELALDFFKRM 290
T++S + ++ + + + + D+L A+V YA+ G+LE A F M
Sbjct: 238 TIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM 297
Query: 291 PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350
++N+VSWNSMI N++ + A+ +F +M EG KP + L + + DL G
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357
Query: 351 QIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
IH++ + + +V + N+LI+MY +C + A +F +++ + +VSWNAMI G A +
Sbjct: 358 FIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQ-SRTLVSWNAMILGFAQN 416
Query: 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
G +AL F MRS V P T++SV++A A + + +V ++ +
Sbjct: 417 GRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKW-IHGVVMRSCLDKNVFV 475
Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
+LVD+ + G + A LI M E W A++ H
Sbjct: 476 TTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTH 517
Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 140/287 (48%), Gaps = 37/287 (12%)
Query: 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283
+F+ L ++ F ++S + ++EA+ +F + + ++ M+ G+A++ +L+ A
Sbjct: 60 VFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKA 119
Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
L F F++M+ + +P + F+ +L +
Sbjct: 120 LQF-------------------------------FVRMRYDDVEPVVYNFTYLLKVCGDE 148
Query: 344 VDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
+L +G +IH ++ K+ D+ L MYA+C + EAR +F+ M +++VSWN +
Sbjct: 149 AELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMP-ERDLVSWNTI 207
Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEY 461
+ G + +G A ALE+ KSM + P++IT +SVL A + L+ G++ H +M
Sbjct: 208 VAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAM--RS 265
Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
G + + +LVD+ + G LE A L GM E + W +++ A
Sbjct: 266 GFDSLVNISTALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDA 311
>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2
SV=1
Length = 654
Score = 299 bits (765), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 190/540 (35%), Positives = 278/540 (51%), Gaps = 55/540 (10%)
Query: 63 WNTVISG------YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
W+ V G + K ++ A ++F MP R+ +WNAM+SGF Q+G A F
Sbjct: 84 WSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFRE 143
Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLV---KCGSRCDGGEDLVRAYNTLIVGYGQRG 173
M + S V LIQ+ +++ ++L G R G + V NT I YG+ G
Sbjct: 144 MRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRL-GVDVQVTVANTWISTYGKCG 202
Query: 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233
++ A+ +F+ I DRG+ R +VSWNSM Y+ G+ A ++ ML R+
Sbjct: 203 DLDSAKLVFEAI----DRGD------RTVVSWNSMFKAYSVFGEAFDAFGLYCLML-REE 251
Query: 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTW--------------------NAMVSG 273
F D+ NL +P+TLT N +S
Sbjct: 252 FK-----------PDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISM 300
Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
Y++ + A F M + VSW MI+G D + A+ LF M GEKPD T
Sbjct: 301 YSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTL 360
Query: 334 SSILSMSSGIVDLHLGMQIHQM--VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391
S++S L G I + +V I NALI MY++CG+I EAR IF+
Sbjct: 361 LSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTP 420
Query: 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
K VV+W MI G A +G EAL+LF M P +ITF++VL ACAH+G +E+G
Sbjct: 421 -EKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGW 479
Query: 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
++F M Y I P ++H++ +VD++GR G+LE+A++LI+ M +PD +WGALL AC++
Sbjct: 480 EYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKI 539
Query: 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYS 571
H NV++A+ AAE+L +EP+ + PYV + N+YA G WD +R +MK NIKK G S
Sbjct: 540 HRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGES 599
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 116/460 (25%), Positives = 192/460 (41%), Gaps = 71/460 (15%)
Query: 5 YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DIMPER 58
+VK + A K+F+ MP+RD +WN M+SG+ SG ++A LF +I P+
Sbjct: 97 FVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQ---SGHTDKAFSLFREMRLNEITPDS 153
Query: 59 DCV---------------------------------TWNTVISGYAKTGEMEEALRLFNS 85
V NT IS Y K G+++ A +F +
Sbjct: 154 VTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEA 213
Query: 86 MPA--RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-SASLSALV--SGLIQNGELDE 140
+ R VVSWN+M + G+ +A + M + LS + + QN E
Sbjct: 214 IDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLT 273
Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
R L+ + G + + A NT I Y + AR LFD + R
Sbjct: 274 QGR-LIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFD------------IMTSR 320
Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME-----E 251
VSW MI YA+ GD+ A +F M++ D + ++ISG +E +
Sbjct: 321 TCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWID 380
Query: 252 ASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
A + + NA++ Y++ G++ A D F P+K +V+W +MIAG N +
Sbjct: 381 ARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIF 440
Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVPINNA 369
A+KLF +M KP+ TF ++L + L G + ++ + + P + +
Sbjct: 441 LEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSC 500
Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
++ + R G + EA + M + W A++ C H
Sbjct: 501 MVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIH 540
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 153/365 (41%), Gaps = 73/365 (20%)
Query: 2 ISGYVKRREMAKARKLFDEMPQ--RDVVSWNVMISGYISSRGSGF--------------- 44
IS Y K ++ A+ +F+ + + R VVSWN M Y S G F
Sbjct: 195 ISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAY-SVFGEAFDAFGLYCLMLREEFK 253
Query: 45 ------------------LEEARYL----FDIMPERDCVTWNTVISGYAKTGEMEEALRL 82
L + R + + ++D NT IS Y+K+ + A L
Sbjct: 254 PDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLL 313
Query: 83 FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGEL 138
F+ M +R VSW MISG+ + GD+ A+ F M D +L +L+SG + G L
Sbjct: 314 FDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSL 373
Query: 139 DEAARVLVKCGSRCD---GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
+ + +R D D V N LI Y + G + EAR +FD P
Sbjct: 374 ETGKWI----DARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTP--------- 420
Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD----TFSWNTMISGYIHVLDMEE 251
++ +V+W +MI YA G + A ++F +M++ D ++ ++ H +E+
Sbjct: 421 ---EKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEK 477
Query: 252 ASNLFVKMPH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGC 305
F M P ++ MV + G LE AL+ + M K + W +++ C
Sbjct: 478 GWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNAC 537
Query: 306 ETNKD 310
+ +++
Sbjct: 538 KIHRN 542
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 15/204 (7%)
Query: 1 MISGYVKRREMAKARKLFDEM----PQRDVVSWNVMIS--GYISSRGSGFLEEARYLFDI 54
MISGY ++ +M +A LF M + D+V+ +IS G S +G +AR
Sbjct: 328 MISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYG 387
Query: 55 MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
+ + N +I Y+K G + EA +F++ P + VV+W MI+G+ NG A++ F
Sbjct: 388 CKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLF 447
Query: 115 DRMPGRD----SASLSALVSGLIQNGELDEAARV--LVKCGSRCDGGEDLVRAYNTLIVG 168
+M D + A++ +G L++ ++K G D Y+ ++
Sbjct: 448 SKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLD---HYSCMVDL 504
Query: 169 YGQRGRVEEARKLFDKIPVNCDRG 192
G++G++EEA +L + D G
Sbjct: 505 LGRKGKLEEALELIRNMSAKPDAG 528
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
+I Y K + +AR +FD P++ VV+W MI+GY +G EA LF M + D
Sbjct: 399 LIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYAL---NGIFLEALKLFSKMIDLDY 455
Query: 61 ----VTWNTVISGYAKTGEMEEALRLFNSMPARNVVS-----WNAMISGFLQNGDVANAI 111
+T+ V+ A +G +E+ F+ M +S ++ M+ + G + A+
Sbjct: 456 KPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEAL 515
Query: 112 EFFDRMPGRDSASL 125
E M + A +
Sbjct: 516 ELIRNMSAKPDAGI 529
Score = 33.5 bits (75), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 12/153 (7%)
Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
L +V +WN I + E+L LF+ M+ P TF V ACA L + G
Sbjct: 14 LSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACAR--LADVG-- 69
Query: 453 HFKSMVNEYGIEPRI--EHF--ASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL-G 507
MV+ + I+ + F + VD+ + ++ A + + MP E D W A+L G
Sbjct: 70 -CCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMP-ERDATTWNAMLSG 127
Query: 508 ACRV-HNNVELAQVAAEALMKVEPENSTPYVLL 539
C+ H + + L ++ P++ T L+
Sbjct: 128 FCQSGHTDKAFSLFREMRLNEITPDSVTVMTLI 160
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 298 bits (764), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 201/652 (30%), Positives = 332/652 (50%), Gaps = 85/652 (13%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGS-GFLEEARYLFDIMPERD 59
+I R +A+ RK+ D + + ++ + +S G G L +AR +FD MPER+
Sbjct: 73 LICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERN 132
Query: 60 CVTWNTVISGYAKTGEMEEALRLFNSMPARNVV----SWNAMISGFLQNGDVANAIEFFD 115
V++ +VI+GY++ G+ EA+RL+ M ++V ++ ++I + DV +
Sbjct: 133 LVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHA 192
Query: 116 RMPGRDSAS----LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ 171
++ +S+S +AL++ ++ ++ +A+RV + DL+ +++++I G+ Q
Sbjct: 193 QVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMK-----DLI-SWSSIIAGFSQ 246
Query: 172 RGRVEEA----------------RKLFDKIPVNC------DRGEG------NVRFKRNIV 203
G EA +F C D G N +
Sbjct: 247 LGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAI 306
Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-- 261
+ S+ YA+ G + SAR +F+Q+ DT SWN +I+G + +EA ++F +M
Sbjct: 307 AGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSG 366
Query: 262 --PDTLT--------------------------W---------NAMVSGYAQIGNLELAL 284
PD ++ W N++++ Y +L
Sbjct: 367 FIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCF 426
Query: 285 DFFKRMPQK-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343
+ F+ + VSWN+++ C ++ ++LF M V +PD T ++L I
Sbjct: 427 NLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEI 486
Query: 344 VDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAM 402
L LG Q+H KT + P+ I N LI MYA+CG++ +AR IF+ M ++VVSW+ +
Sbjct: 487 SSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDN-RDVVSWSTL 545
Query: 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462
I G A GF EAL LFK M+S + P ++TF+ VL+AC+H GLVEEG + + +M E+G
Sbjct: 546 IVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHG 605
Query: 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522
I P EH + +VD++ R GRL +A I M EPD VW LL AC+ NV LAQ AA
Sbjct: 606 ISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAA 665
Query: 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
E ++K++P NST +VLL +M+A G W++A +R MK +++KK G SW++
Sbjct: 666 ENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIE 717
Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 138/520 (26%), Positives = 226/520 (43%), Gaps = 76/520 (14%)
Query: 28 SWNVMISGYIS----SRGSGFLEEARYLFDIMPERDC----VTWNTVISGYAKTGEMEEA 79
S+ + + YIS S L + R + D + +C + N ++S Y K G + +A
Sbjct: 62 SFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDA 121
Query: 80 LRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELD 139
+F+ MP RN+VS+ ++I+G+ QNG A AI + +M D LV G +
Sbjct: 122 REVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQED------LVPDQFAFGSII 175
Query: 140 EAARVLVKCGSRCDGG--------------EDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
+A C S D G + A N LI Y + ++ +A ++F I
Sbjct: 176 KA------CASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGI 229
Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
P+ ++++SW+S+I +++ G A ++ML F N I G
Sbjct: 230 PM------------KDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGS-- 275
Query: 246 VLDMEEASNLFVKMPHPD------------TLTWNA-----MVSGYAQIGNLELALDFFK 288
++ S+L PD L NA + YA+ G L A F
Sbjct: 276 --SLKACSSLL----RPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFD 329
Query: 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348
++ + + SWN +IAG N + A+ +F QM+ G PD + S+L + + L
Sbjct: 330 QIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQ 389
Query: 349 GMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA 407
GMQIH + K + D+ + N+L+TMY C + +FE+ + + VSWN ++ C
Sbjct: 390 GMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACL 449
Query: 408 SHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPR 466
H E L LFK M + P +IT ++L C ++ G Q H S+ + G+ P
Sbjct: 450 QHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSL--KTGLAPE 507
Query: 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
L+D+ + G L A + M D W L+
Sbjct: 508 QFIKNGLIDMYAKCGSLGQARRIFDSMD-NRDVVSWSTLI 546
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 296 bits (759), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 186/558 (33%), Positives = 302/558 (54%), Gaps = 56/558 (10%)
Query: 45 LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQN 104
L A +F + E + + WNT+ G+A + + AL+L+ M + ++ + L++
Sbjct: 84 LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143
Query: 105 GDVANAIEFFDRMPGR--------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
+ A + ++ G D ++L+S +QNG L++A +V K R
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR----- 198
Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
D+V +Y LI GY RG +E A+KLFD+IPV +++VSWN+MI YA+ G
Sbjct: 199 DVV-SYTALIKGYASRGYIENAQKLFDEIPV------------KDVVSWNAMISGYAETG 245
Query: 217 DVVSAREIFEQMLER----DTFSWNTMISG-------------YIHVLDMEEASNLFVKM 259
+ A E+F+ M++ D + T++S ++ + D SNL +
Sbjct: 246 NYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIV- 304
Query: 260 PHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
NA++ Y++ G LE A F+R+P K+++SWN++I G Y+ A+ LF
Sbjct: 305 --------NALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQ 356
Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT---VIPDVPINNALITMYAR 376
+M GE P+ T SIL + + + +G IH + K V + +LI MYA+
Sbjct: 357 EMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAK 416
Query: 377 CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436
CG I A +F + L K++ SWNAMI G A HG A + +LF MR + P ITF+
Sbjct: 417 CGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVG 475
Query: 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496
+LSAC+H+G+++ GR F++M +Y + P++EH+ ++D++G G ++A ++I M E
Sbjct: 476 LLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEME 535
Query: 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556
PD +W +LL AC++H NVEL + AE L+K+EPEN YVLL N+YA GRW++ + R
Sbjct: 536 PDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTR 595
Query: 557 LLMKSNNIKKPTGYSWVD 574
L+ +KK G S ++
Sbjct: 596 ALLNDKGMKKVPGCSSIE 613
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 200/403 (49%), Gaps = 35/403 (8%)
Query: 25 DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
D+ +IS Y+ + G LE+A +FD P RD V++ +I GYA G +E A +LF+
Sbjct: 168 DLYVHTSLISMYVQN---GRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFD 224
Query: 85 SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140
+P ++VVSWNAMISG+ + G+ A+E F M D +++ +VS Q+G ++
Sbjct: 225 EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIEL 284
Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
+V + G ++ N LI Y + G +E A LF+++P +
Sbjct: 285 GRQVHLWIDDHGFGSN--LKIVNALIDLYSKCGELETACGLFERLPY------------K 330
Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLER-DTFSWNTMIS-----GYIHVLDMEEASN 254
+++SWN++I Y A +F++ML +T + TM+S ++ +D+ +
Sbjct: 331 DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIH 390
Query: 255 LFVK-----MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNK 309
+++ + + +L +++ YA+ G++E A F + K+L SWN+MI G +
Sbjct: 391 VYIDKRLKGVTNASSLR-TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHG 449
Query: 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPIN 367
+ + LF +M+ G +PD TF +LS S L LG I + +T+ + P +
Sbjct: 450 RADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHY 509
Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
+I + G EA + M++ + V W +++ C HG
Sbjct: 510 GCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHG 552
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 166/350 (47%), Gaps = 29/350 (8%)
Query: 220 SAREIFEQMLERDTFSWNTMISGYI-------HVLDMEEASNLFVKMPHPDTLTWNAMVS 272
S R I QM++ + N +S I H + A ++F + P+ L WN M
Sbjct: 48 SLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFR 107
Query: 273 GYAQIGNLELALDFFKRMPQKNLV----SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
G+A + AL + M L+ ++ ++ C +K ++ ++ + G
Sbjct: 108 GHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDL 167
Query: 329 DRHTFSSILSM--SSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARII 386
D + +S++SM +G ++ H++ K+ DV ALI YA G I A+ +
Sbjct: 168 DLYVHTSLISMYVQNGRLE-----DAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKL 222
Query: 387 FEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446
F+E+ +K+VVSWNAMI G A G EALELFK M V P T ++V+SACA +G
Sbjct: 223 FDEIP-VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 281
Query: 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL 506
+E GRQ ++++G ++ +L+D+ + G LE A L + +P++ D W L+
Sbjct: 282 IELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DVISWNTLI 339
Query: 507 GACRVHNNV--ELAQVAAEALMKVEPENSTPYVLLYNMYA-----DVGRW 549
G H N+ E + E L E N + + A D+GRW
Sbjct: 340 GG-YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 388
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 135/335 (40%), Gaps = 85/335 (25%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLF------DI 54
+I GY R + A+KLFDE+P +DVVSWN MISGY +G +EA LF ++
Sbjct: 206 LIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAE---TGNYKEALELFKDMMKTNV 262
Query: 55 MPE--------------------RDCVTW-------------NTVISGYAKTGEMEEALR 81
P+ R W N +I Y+K GE+E A
Sbjct: 263 RPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACG 322
Query: 82 LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM----PGRDSASLSALVSGLIQNGE 137
LF +P ++V+SWN +I G+ A+ F M + ++ +++ G
Sbjct: 323 LFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 382
Query: 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVR 197
+D + V R G + +LI Y + G +E A ++F+ I
Sbjct: 383 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI------------ 430
Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFV 257
+++ SWN+MI +A G ++ ++F +M +
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGI------------------------ 466
Query: 258 KMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292
PD +T+ ++S + G L+L F+ M Q
Sbjct: 467 ---QPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 295 bits (754), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 183/600 (30%), Positives = 289/600 (48%), Gaps = 112/600 (18%)
Query: 14 ARKLFDEMPQRDVVSWNVMISGYISSRGS-----GFLE--------EARYLFDIMPE--- 57
ARK+FDE+P+ + +WN +I Y S FL+ +Y F + +
Sbjct: 83 ARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAA 142
Query: 58 ---------------------RDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNA 96
D N++I Y G+++ A ++F ++ ++VVSWN+
Sbjct: 143 EVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNS 202
Query: 97 MISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156
MI+GF+Q G A+E F +M D + + G++ S C
Sbjct: 203 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL----------------SACAKIR 246
Query: 157 DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216
+L + + Y + RV NV N+ N+M+ Y K G
Sbjct: 247 NL--EFGRQVCSYIEENRV-------------------NV----NLTLANAMLDMYTKCG 281
Query: 217 DVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQ 276
+ A+ +F+ M E+D +W TM+ GY D E A + MP D + WNA++S Y Q
Sbjct: 282 SIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQ 341
Query: 277 IGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS 335
G AL F + QKN+ K ++ T S
Sbjct: 342 NGKPNEALIVFHELQLQKNM-------------------------------KLNQITLVS 370
Query: 336 ILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLK 394
LS + + L LG IH + K I + + +ALI MY++CG + ++R +F ++ +
Sbjct: 371 TLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KR 429
Query: 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHF 454
+V W+AMIGG A HG EA+++F M+ V P +TF +V AC+H GLV+E F
Sbjct: 430 DVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLF 489
Query: 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNN 514
M + YGI P +H+A +VD++GR G LE A+ I+ MP P +VWGALLGAC++H N
Sbjct: 490 HQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHAN 549
Query: 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
+ LA++A L+++EP N +VLL N+YA +G+W++ +E+R M+ +KK G S ++
Sbjct: 550 LNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIE 609
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 104/430 (24%), Positives = 181/430 (42%), Gaps = 71/430 (16%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
+I Y ++ A K+F + ++DVVSWN MI+G++ G ++A LF M D
Sbjct: 172 LIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ---KGSPDKALELFKKMESEDV 228
Query: 61 ----VTWNTVISG-----------------------------------YAKTGEMEEALR 81
VT V+S Y K G +E+A R
Sbjct: 229 KASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKR 288
Query: 82 LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141
LF++M ++ V+W M+ G+ + D A E + MP +D + +AL+S QNG+ +EA
Sbjct: 289 LFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEA 348
Query: 142 ARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201
V + + + + + +TL Q G +E R + I + +R +
Sbjct: 349 LIVFHELQLQKNMKLNQITLVSTL-SACAQVGALELGRWIHSYIK------KHGIRMNFH 401
Query: 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH 261
+ S ++I Y+K GD+ +RE+F + +RD F W+ MI G EA ++F KM
Sbjct: 402 VTS--ALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQE 459
Query: 262 ----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN----KDY-E 312
P+ +T+ + + G ++ A F +M + C + Y E
Sbjct: 460 ANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLE 519
Query: 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA--- 369
A+K M + P + ++L G +H + + +M ++ P N+
Sbjct: 520 KAVKFIEAMPI---PPSTSVWGALL----GACKIHANLNLAEMACTRLLELEPRNDGAHV 572
Query: 370 -LITMYARCG 378
L +YA+ G
Sbjct: 573 LLSNIYAKLG 582
>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610
OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
Length = 654
Score = 290 bits (743), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 203/628 (32%), Positives = 312/628 (49%), Gaps = 77/628 (12%)
Query: 5 YVKRREMAKARKLFDEMPQRDV--VSWNVMISGYISSRGSGFLEEARYLF------DIMP 56
Y E+ AR +FDE+P + ++W++MI Y S+ F E+A L+ + P
Sbjct: 45 YASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASN---DFAEKALDLYYKMLNSGVRP 101
Query: 57 ER---------------------------------DCVTWNTVISGYAKTGEMEEALRLF 83
+ D ++ YAK GE+E A+++F
Sbjct: 102 TKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVF 161
Query: 84 NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD--SASLSALVS---GLIQNGEL 138
+ MP R++V+WNAMISGF + + + I F M D S +LS +V L + G L
Sbjct: 162 DEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGAL 221
Query: 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
E V C +R DLV L V Y + + AR++FD + F
Sbjct: 222 REGKAVHGYC-TRMGFSNDLVVKTGILDV-YAKSKCIIYARRVFD------------LDF 267
Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL--- 255
K+N V+W++MI Y + + A E+F QML D + T ++ + ++ +L
Sbjct: 268 KKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGG 327
Query: 256 ------FVKMPHPDTLT-WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETN 308
VK LT N ++S YA+ G+L A F + K+++S+NS+I GC N
Sbjct: 328 RCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVN 387
Query: 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVIPDVPIN 367
E + +LF +M+ G +PD T +L+ S + L G H V + I
Sbjct: 388 CRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSIC 447
Query: 368 NALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427
NAL+ MY +CG + A+ +F+ M +++VSWN M+ G HG EAL LF SM+ V
Sbjct: 448 NALMDMYTKCGKLDVAKRVFDTMHK-RDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGV 506
Query: 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMV-NEYGIEPRIEHFASLVDIVGRHGRLEDA 486
P +T +++LSAC+H+GLV+EG+Q F SM ++ + PRI+H+ + D++ R G L++A
Sbjct: 507 NPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEA 566
Query: 487 MDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546
D + MPFEPD V G LL AC + N EL ++ M+ E + VLL N Y+
Sbjct: 567 YDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKK-MQSLGETTESLVLLSNTYSAA 625
Query: 547 GRWDDANEVRLLMKSNNIKKPTGYSWVD 574
RW+DA +R++ K + K GYSWVD
Sbjct: 626 ERWEDAARIRMIQKKRGLLKTPGYSWVD 653
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 116/472 (24%), Positives = 192/472 (40%), Gaps = 145/472 (30%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGY------------------------ 36
++ Y K E+ A K+FDEMP+RD+V+WN MISG+
Sbjct: 144 LVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSP 203
Query: 37 --------ISSRG-SGFLEEAR----YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83
+ G +G L E + Y + D V ++ YAK+ + A R+F
Sbjct: 204 NLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVF 263
Query: 84 NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVS------GLIQNGE 137
+ +N V+W+AMI G+++N + A E F +M D+ ++ V+ G + G+
Sbjct: 264 DLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGD 323
Query: 138 LD----------EAARVL------------VKCGSRCD--------GGEDLVRAYNTLIV 167
L +A +L K GS CD G +D++ +YN+LI
Sbjct: 324 LSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVI-SYNSLIT 382
Query: 168 GYGQRGRVEEARKLFDKIPVNCDR-------------------GEGNV--------RFKR 200
G R EE+ +LF ++ + R G G+ +
Sbjct: 383 GCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAV 442
Query: 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY-IHVLDMEEASNLFVKM 259
N N+++ Y K G + A+ +F+ M +RD SWNTM+ G+ IH L +EA +LF M
Sbjct: 443 NTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLG-KEALSLFNSM 501
Query: 260 P----HPDTLT-------------------------------------WNAMVSGYAQIG 278
+PD +T +N M A+ G
Sbjct: 502 QETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAG 561
Query: 279 NLELALDFFKRMP-QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329
L+ A DF +MP + ++ ++++ C T K+ E ++ +MQ GE +
Sbjct: 562 YLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKMQSLGETTE 613
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 139/311 (44%), Gaps = 43/311 (13%)
Query: 207 SMIMCYAKAGDVVSAREIFEQMLERD-TFSWNTMISG----YIHVLDMEEASNLFVKMPH 261
S++ ++ ++V + I + +L+R T S +T++ Y ++E A ++F ++PH
Sbjct: 4 SLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPH 63
Query: 262 P--DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFI 319
P + + W+ M+ YA +N E A+ L+
Sbjct: 64 PRINPIAWDLMIRAYA-------------------------------SNDFAEKALDLYY 92
Query: 320 QMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCG 378
+M G +P ++T+ +L +G+ + G IH V + D+ + AL+ YA+CG
Sbjct: 93 KMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCG 152
Query: 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVL-PTYITFISV 437
+ A +F+EM +++V+WNAMI G + H T+ + LF MR L P T + +
Sbjct: 153 ELEMAIKVFDEMP-KRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGM 211
Query: 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497
A AG + EG+ G + ++D+ + + A + + F+
Sbjct: 212 FPALGRAGALREGKA-VHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFD-LDFKK 269
Query: 498 DKAVWGALLGA 508
++ W A++G
Sbjct: 270 NEVTWSAMIGG 280
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 7/184 (3%)
Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTK---TVIPDVPINNALITMYARCGAIVEARIIFEE 389
F S+L +L LG IHQ + K T+ + N L +YA C + AR +F+E
Sbjct: 2 FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVN-LTRLYASCNEVELARHVFDE 60
Query: 390 MKLLK-NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
+ + N ++W+ MI AS+ FA +AL+L+ M + V PT T+ VL ACA ++
Sbjct: 61 IPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAID 120
Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
+G+ S VN + +LVD + G LE A+ + MP + D W A++
Sbjct: 121 DGKL-IHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMP-KRDMVAWNAMISG 178
Query: 509 CRVH 512
+H
Sbjct: 179 FSLH 182
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 192/629 (30%), Positives = 316/629 (50%), Gaps = 76/629 (12%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
++S Y + A +F M QRD V++N +I+G +S G G E+A LF M
Sbjct: 329 LVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING-LSQCGYG--EKAMELFKRMHLDGL 385
Query: 56 -PERD--------CVTWNTVISG-------------------------YAKTGEMEEALR 81
P+ + C T+ G YAK ++E AL
Sbjct: 386 EPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALD 445
Query: 82 LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD----SASLSALVSGLIQNGE 137
F NVV WN M+ + D+ N+ F +M + + +++ I+ G+
Sbjct: 446 YFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGD 505
Query: 138 LDEAARVLVKCGSRCDGGEDLVRAY--NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
L+ ++ S+ + AY + LI Y + G+++ A +
Sbjct: 506 LELGEQI----HSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL------------- 548
Query: 196 VRFK-RNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDME 250
+RF +++VSW +MI Y + A F QML+R D +S + ++
Sbjct: 549 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 608
Query: 251 EASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
E + + D NA+V+ Y++ G +E + F++ + ++WN++++G +
Sbjct: 609 EGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQ 668
Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVP 365
+ + E A+++F++M EG + TF S + +S ++ G Q+H ++TKT +
Sbjct: 669 QSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETE 728
Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
+ NALI+MYA+CG+I +A F E+ KN VSWNA+I + HGF +EAL+ F M
Sbjct: 729 VCNALISMYAKCGSISDAEKQFLEVST-KNEVSWNAIINAYSKHGFGSEALDSFDQMIHS 787
Query: 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485
V P ++T + VLSAC+H GLV++G +F+SM +EYG+ P+ EH+ +VD++ R G L
Sbjct: 788 NVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSR 847
Query: 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545
A + I+ MP +PD VW LL AC VH N+E+ + AA L+++EPE+S YVLL N+YA
Sbjct: 848 AKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAV 907
Query: 546 VGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
+WD + R MK +KK G SW++
Sbjct: 908 SKKWDARDLTRQKMKEKGVKKEPGQSWIE 936
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 150/569 (26%), Positives = 248/569 (43%), Gaps = 77/569 (13%)
Query: 5 YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWN 64
Y+ + ++ A K+FDEMP+R + +WN MI ++SR + E LF M +
Sbjct: 130 YLFKGDLYGAFKVFDEMPERTIFTWNKMIKE-LASRN--LIGEVFGLFVRMVSENVTPNE 186
Query: 65 TVISGYAKTG----------EMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFF 114
SG + E A L+ + VV N +I + +NG V A F
Sbjct: 187 GTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVC-NPLIDLYSRNGFVDLARRVF 245
Query: 115 DRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174
D + +D +S A++SGL +N EA R+ C G A+++++ +
Sbjct: 246 DGLRLKDHSSWVAMISGLSKNECEAEAIRLF--CDMYVLGIMPTPYAFSSVLSACKKIES 303
Query: 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTF 234
+E +L + + F + N+++ Y G+++SA IF M +RD
Sbjct: 304 LEIGEQLHGLVL--------KLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAV 355
Query: 235 SWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSG----------------- 273
++NT+I+G E+A LF +M PD+ T ++V
Sbjct: 356 TYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYT 415
Query: 274 ------------------YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315
YA+ ++E ALD+F +N+V WN M+ D +
Sbjct: 416 TKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSF 475
Query: 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMY 374
++F QMQ+E P+++T+ SIL + DL LG QIH + KT + + + LI MY
Sbjct: 476 RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMY 535
Query: 375 ARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF 434
A+ G + A I K+VVSW MI G + F +AL F+ M + +
Sbjct: 536 AKLGKLDTAWDILIRFA-GKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGL 594
Query: 435 ISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493
+ +SACA ++EG+Q H ++ V+ G + +LV + R G++E++ +
Sbjct: 595 TNAVSACAGLQALKEGQQIHAQACVS--GFSSDLPFQNALVTLYSRCGKIEESY-----L 647
Query: 494 PFEP----DKAVWGALLGACRVHNNVELA 518
FE D W AL+ + N E A
Sbjct: 648 AFEQTEAGDNIAWNALVSGFQQSGNNEEA 676
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 171/517 (33%), Positives = 270/517 (52%), Gaps = 51/517 (9%)
Query: 66 VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASL 125
++ YA ++ A ++F+ +P RNV+ N MI ++ NG ++ F M G
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCG------ 133
Query: 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185
N D V C G T+++G G +
Sbjct: 134 --------CNVRPDHYTFPCVLKACSCSG---------TIVIGRKIHGSATK-------- 168
Query: 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH 245
V + N ++ Y K G + AR + ++M RD SWN+++ GY
Sbjct: 169 ----------VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQ 218
Query: 246 VLDMEEASNLF-----VKMPHPDTLTWNAMVSGYAQIG--NLELALDFFKRMPQKNLVSW 298
++A + VK+ H D T +++ + N+ D F +M +K+LVSW
Sbjct: 219 NQRFDDALEVCREMESVKISH-DAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSW 277
Query: 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT- 357
N MI N A++L+ +M+ +G +PD + +S+L L LG +IH +
Sbjct: 278 NVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIER 337
Query: 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE 417
K +IP++ + NALI MYA+CG + +AR +FE MK ++VVSW AMI G +A+
Sbjct: 338 KKLIPNLLLENALIDMYAKCGCLEKARDVFENMKS-RDVVSWTAMISAYGFSGRGCDAVA 396
Query: 418 LFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477
LF ++ ++P I F++ L+AC+HAGL+EEGR FK M + Y I PR+EH A +VD++
Sbjct: 397 LFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLL 456
Query: 478 GRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537
GR G++++A I+ M EP++ VWGALLGACRVH++ ++ +AA+ L ++ PE S YV
Sbjct: 457 GRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYV 516
Query: 538 LLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
LL N+YA GRW++ +R +MKS +KK G S V+
Sbjct: 517 LLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVE 553
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 93/367 (25%), Positives = 155/367 (42%), Gaps = 87/367 (23%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----- 55
++ Y +++A ARK+FDE+P+R+V+ NVMI Y++ +GF E +F M
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVN---NGFYGEGVKVFGTMCGCNV 136
Query: 56 -PE--------RDCVTWNTVISG-------------------------YAKTGEMEEALR 81
P+ + C T++ G Y K G + EA
Sbjct: 137 RPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 196
Query: 82 LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGE 137
+ + M R+VVSWN+++ G+ QN +A+E M D+ ++++L+ + N
Sbjct: 197 VLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPA-VSNTT 255
Query: 138 LDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK---------- 184
+ V K G + LV ++N +I Y + EA +L+ +
Sbjct: 256 TENVMYVKDMFFKMGKK-----SLV-SWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDA 309
Query: 185 ------IPVNCDRG--------EGNVRFKR---NIVSWNSMIMCYAKAGDVVSAREIFEQ 227
+P D G + K+ N++ N++I YAK G + AR++FE
Sbjct: 310 VSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFEN 369
Query: 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH----PDTLTWNAMVSGYAQIGNLELA 283
M RD SW MIS Y +A LF K+ PD++ + ++ + G LE
Sbjct: 370 MKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEG 429
Query: 284 LDFFKRM 290
FK M
Sbjct: 430 RSCFKLM 436
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 287 bits (735), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 198/632 (31%), Positives = 315/632 (49%), Gaps = 82/632 (12%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG-------YISSRGSGFLEEARYLFD 53
+I Y+K + AR +FD +P++ V+W MISG Y+S + L E + D
Sbjct: 189 LIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPD 248
Query: 54 ------------IMP-----------------ERDCVTWNTVISGYAKTGEMEEALRLFN 84
I+P E D N +I Y K G + A +LFN
Sbjct: 249 GYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFN 308
Query: 85 SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDE 140
MP +N++SW ++SG+ QN A+E F M D + S++++ L
Sbjct: 309 GMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGF 368
Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200
+V G + V N+LI Y + + +ARK+FD
Sbjct: 369 GTQVHAYTIKANLGNDSYVT--NSLIDMYAKCDCLTDARKVFDIFAA------------A 414
Query: 201 NIVSWNSMIMCYAKAG---DVVSAREIFEQM--------------LERDTFSWNTM-ISG 242
++V +N+MI Y++ G ++ A IF M L R + S ++ +S
Sbjct: 415 DVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSK 474
Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
IH L + NL D +A++ Y+ L+ + F M K+LV WNSM
Sbjct: 475 QIHGLMFKYGLNL-------DIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMF 527
Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QMVTKTVI 361
AG + E A+ LF+++Q+ E+PD TF+++++ + + + LG + H Q++ + +
Sbjct: 528 AGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLE 587
Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKS 421
+ I NAL+ MYA+CG+ +A F+ ++VV WN++I A+HG +AL++ +
Sbjct: 588 CNPYITNALLDMYAKCGSPEDAHKAFDSAAS-RDVVCWNSVISSYANHGEGKKALQMLEK 646
Query: 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG 481
M S + P YITF+ VLSAC+HAGLVE+G + F+ M+ +GIEP EH+ +V ++GR G
Sbjct: 647 MMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML-RFGIEPETEHYVCMVSLLGRAG 705
Query: 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541
RL A +LI+ MP +P VW +LL C NVELA+ AAE + +P++S + +L N
Sbjct: 706 RLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSN 765
Query: 542 MYADVGRWDDANEVRLLMKSNNIKKPTGYSWV 573
+YA G W +A +VR MK + K G SW+
Sbjct: 766 IYASKGMWTEAKKVRERMKVEGVVKEPGRSWI 797
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 134/479 (27%), Positives = 225/479 (46%), Gaps = 52/479 (10%)
Query: 57 ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANA-IEFFD 115
E D N +I+ Y++ G M A ++F MP RN+VSW+ M+S +G + + F +
Sbjct: 76 ELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLE 135
Query: 116 RMPGRDSASLSALVSGLIQNGE-LDEAAR--------VLVKCGSRCDGGEDLVRAYNTLI 166
R + ++S IQ LD R LVK G D V LI
Sbjct: 136 FWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRD-----VYVGTLLI 190
Query: 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE 226
Y + G ++ AR +FD +P +++ V+W +MI K G + ++F
Sbjct: 191 DFYLKDGNIDYARLVFDALP------------EKSTVTWTTMISGCVKMGRSYVSLQLFY 238
Query: 227 QMLERDTFSWNTMISGYIHVLDMEEASNL-FV---KMPHPDTLTW---------NAMVSG 273
Q++E N + GYI + S L F+ K H L + N ++
Sbjct: 239 QLMED-----NVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDS 293
Query: 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333
Y + G + A F MP KN++SW ++++G + N ++ A++LF M G KPD +
Sbjct: 294 YVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYAC 353
Query: 334 SSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKL 392
SSIL+ + + L G Q+H K + D + N+LI MYA+C + +AR +F ++
Sbjct: 354 SSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVF-DIFA 412
Query: 393 LKNVVSWNAMIGGCASHGFA---TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
+VV +NAMI G + G EAL +F+ MR + P+ +TF+S+L A A +
Sbjct: 413 AADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGL 472
Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
+Q ++ +YG+ I ++L+D+ L+D+ + M + D +W ++
Sbjct: 473 SKQ-IHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVK-DLVIWNSMFAG 529
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 161/668 (24%), Positives = 290/668 (43%), Gaps = 122/668 (18%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISG------------------------- 35
+I+ Y + M ARK+F++MP+R++VSW+ M+S
Sbjct: 85 LINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSP 144
Query: 36 --YISSR----GSGFLEEARYL-FDIMP-------ERDCVTWNTVISGYAKTGEMEEALR 81
YI S SG R++ F + +RD +I Y K G ++ A
Sbjct: 145 NEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARL 204
Query: 82 LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSG-----L 132
+F+++P ++ V+W MISG ++ G +++ F ++ D LS ++S
Sbjct: 205 VFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPF 264
Query: 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192
++ G+ A +++ G D N LI Y + GRV A KLF+ +P
Sbjct: 265 LEGGKQIHAH--ILRYGLEMDAS-----LMNVLIDSYVKCGRVIAAHKLFNGMP------ 311
Query: 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMIS--GYIHV 246
+NI+SW +++ Y + A E+F M L+ D ++ +++++ +H
Sbjct: 312 ------NKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHA 365
Query: 247 LDMEEASNLFVKMPH--PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
L + + + D+ N+++ YA+ L A F ++V +N+MI G
Sbjct: 366 LGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEG 425
Query: 305 CE---TNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI 361
T + A+ +F M+ +P TF S+L S+ + L L QIH ++ K +
Sbjct: 426 YSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGL 485
Query: 362 P-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFK 420
D+ +ALI +Y+ C + ++R++F+EMK +K++V WN+M G EAL LF
Sbjct: 486 NLDIFAGSALIDVYSNCYCLKDSRLVFDEMK-VKDLVIWNSMFAGYVQQSENEEALNLFL 544
Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE---------------- 464
++ + P TF ++++A + V+ G Q F + + G+E
Sbjct: 545 ELQLSRERPDEFTFANMVTAAGNLASVQLG-QEFHCQLLKRGLECNPYITNALLDMYAKC 603
Query: 465 --PRIEHFA-------------SLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALL 506
P H A S++ HG + A+ +++ M EP+ + +L
Sbjct: 604 GSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVL 663
Query: 507 GACRVHNNVELAQVAAEALMK--VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564
AC VE E +++ +EPE + YV + ++ GR + A E+ M +
Sbjct: 664 SACSHAGLVEDGLKQFELMLRFGIEPE-TEHYVCMVSLLGRAGRLNKARELIEKMPT--- 719
Query: 565 KKPTGYSW 572
KP W
Sbjct: 720 -KPAAIVW 726
>sp|P0C8Q5|PP336_ARATH Pentatricopeptide repeat-containing protein At4g22760
OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1
Length = 578
Score = 287 bits (734), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 159/427 (37%), Positives = 253/427 (59%), Gaps = 17/427 (3%)
Query: 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212
D E ++N+L+ GY + G ++EAR++FDKIP +++ VSWN +I Y
Sbjct: 164 DIAEKNTVSWNSLLHGYLESGELDEARRVFDKIP------------EKDAVSWNLIISSY 211
Query: 213 AKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVS 272
AK GD+ +A +F M + SWN +I GY++ +M+ A F MP + ++W M+S
Sbjct: 212 AKKGDMGNACSLFSAMPLKSPASWNILIGGYVNCREMKLARTYFDAMPQKNGVSWITMIS 271
Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE--KPDR 330
GY ++G+++ A + F+ M +K+ + +++MIA N + A+KLF QM +PD
Sbjct: 272 GYTKLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDE 331
Query: 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEE 389
T SS++S +S + + G + +T+ I D ++ +LI +Y + G +A +F
Sbjct: 332 ITLSSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSN 391
Query: 390 MKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449
+ K+ VS++AMI GC +G ATEA LF +M K+ P +TF +LSA +H+GLV+E
Sbjct: 392 LNK-KDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQE 450
Query: 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
G + F SM ++ +EP +H+ +VD++GR GRLE+A +LIK MP +P+ VWGALL A
Sbjct: 451 GYKCFNSM-KDHNLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLAS 509
Query: 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569
+HNNVE ++A +K+E + + L +Y+ VGRWDDA VR +K + K G
Sbjct: 510 GLHNNVEFGEIACSHCVKLETDPTGYLSHLAMIYSSVGRWDDARTVRDSIKEKKLCKTLG 569
Query: 570 YSWVDFS 576
SWV+ S
Sbjct: 570 CSWVEGS 576
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 167/316 (52%), Gaps = 44/316 (13%)
Query: 14 ARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKT 73
A+K FD++ +++ VSWN ++ GY+ S G L+EAR +FD +PE+D V+WN +IS YAK
Sbjct: 158 AKKAFDDIAEKNTVSWNSLLHGYLES---GELDEARRVFDKIPEKDAVSWNLIISSYAKK 214
Query: 74 GEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI 133
G+M A LF++MP ++ SWN +I G++ ++ A +FD MP ++ S ++SG
Sbjct: 215 GDMGNACSLFSAMPLKSPASWNILIGGYVNCREMKLARTYFDAMPQKNGVSWITMISGYT 274
Query: 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF----------- 182
+ G++ ++A L + S+ D LV Y+ +I Y Q G+ ++A KLF
Sbjct: 275 KLGDV-QSAEELFRLMSKKD---KLV--YDAMIACYTQNGKPKDALKLFAQMLERNSYIQ 328
Query: 183 -DKIP----VNCDRGEGNVRFKRNIVSW-------------NSMIMCYAKAGDVVSAREI 224
D+I V+ + GN F + S+ S+I Y K GD A ++
Sbjct: 329 PDEITLSSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKM 388
Query: 225 FEQMLERDTFSWNTMISGYIHVLDMEEASNLFV-----KMPHPDTLTWNAMVSGYAQIGN 279
F + ++DT S++ MI G EA++LF K+P P+ +T+ ++S Y+ G
Sbjct: 389 FSNLNKKDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIP-PNVVTFTGLLSAYSHSGL 447
Query: 280 LELALDFFKRMPQKNL 295
++ F M NL
Sbjct: 448 VQEGYKCFNSMKDHNL 463
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 176/409 (43%), Gaps = 91/409 (22%)
Query: 43 GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
G++E A+ FD + E++ V+WN+++ GY ++GE++EA R+F+ +P ++ VSWN +IS +
Sbjct: 153 GYIELAKKAFDDIAEKNTVSWNSLLHGYLESGELDEARRVFDKIPEKDAVSWNLIISSYA 212
Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
+ GD+ NA F MP + AS +
Sbjct: 213 KKGDMGNACSLFSAMPLKSPAS-------------------------------------W 235
Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
N LI GY ++ AR FD +P ++N VSW +MI Y K GDV SA
Sbjct: 236 NILIGGYVNCREMKLARTYFDAMP------------QKNGVSWITMISGYTKLGDVQSAE 283
Query: 223 EIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTLTWNAMVSGYAQ 276
E+F M ++D ++ MI+ Y ++A LF +M PD +T +++VS +Q
Sbjct: 284 ELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQ 343
Query: 277 IGNLEL-----------------------------------ALDFFKRMPQKNLVSWNSM 301
+GN A F + +K+ VS+++M
Sbjct: 344 LGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNKKDTVSYSAM 403
Query: 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ-IHQMVTKTV 360
I GC N A LF M + P+ TF+ +LS S + G + + M +
Sbjct: 404 IMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKDHNL 463
Query: 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
P ++ M R G + EA + + M + N W A++ H
Sbjct: 464 EPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLH 512
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 139/303 (45%), Gaps = 42/303 (13%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
+I GYV REM AR FD MPQ++ VSW MISGY G ++ A LF +M ++D
Sbjct: 238 LIGGYVNCREMKLARTYFDAMPQKNGVSWITMISGYTK---LGDVQSAEELFRLMSKKDK 294
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSMPARNV------VSWNAMISGFLQNGDVANA--IE 112
+ ++ +I+ Y + G+ ++AL+LF M RN ++ ++++S Q G+ + +E
Sbjct: 295 LVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVE 354
Query: 113 FFDRMPG--RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG 170
+ G D ++L+ ++ G+ +A ++ + D V +Y+ +I+G G
Sbjct: 355 SYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNKK-----DTV-SYSAMIMGCG 408
Query: 171 QRGRVEEARKLF-----DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225
G EA LF KIP N+V++ ++ Y+ +G V + F
Sbjct: 409 INGMATEANSLFTAMIEKKIP-------------PNVVTFTGLLSAYSHSGLVQEGYKCF 455
Query: 226 EQM----LERDTFSWNTMISGYIHVLDMEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNL 280
M LE + M+ +EEA L MP P+ W A++ N+
Sbjct: 456 NSMKDHNLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLHNNV 515
Query: 281 ELA 283
E
Sbjct: 516 EFG 518
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 115/270 (42%), Gaps = 47/270 (17%)
Query: 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH-QM 355
SW ++ ++ ++ + ++I M G P H +S+L + ++ G IH Q
Sbjct: 71 SWGCLVRFLSQHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHAQA 130
Query: 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415
+ + V + L+ +Y+R G I A+ F+++ KN VSWN+++ HG+ E+
Sbjct: 131 LKNGLCGCVYVQTGLVGLYSRLGYIELAKKAFDDIA-EKNTVSWNSLL-----HGY-LES 183
Query: 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475
EL ++ R F +P E+ + +++ Y
Sbjct: 184 GELDEARRVFDKIP------------------EKDAVSWNLIISSY-------------- 211
Query: 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535
+ G + +A L MP + A W L+G ++LA+ +A+ + +N
Sbjct: 212 --AKKGDMGNACSLFSAMPLK-SPASWNILIGGYVNCREMKLARTYFDAMPQ---KNGVS 265
Query: 536 YVLLYNMYADVGRWDDANEV-RLLMKSNNI 564
++ + + Y +G A E+ RL+ K + +
Sbjct: 266 WITMISGYTKLGDVQSAEELFRLMSKKDKL 295
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 283 bits (723), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 182/625 (29%), Positives = 316/625 (50%), Gaps = 69/625 (11%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFD------I 54
++ Y + + +AR++FDEMP RD+VSWN +ISGY S G+ EEA ++ I
Sbjct: 147 LVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSS---HGYYEEALEIYHELKNSWI 203
Query: 55 MPERDCVTWNTVISGYA-----KTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVAN 109
+P D T ++V+ + K G+ L S VV N +++ +L+ +
Sbjct: 204 VP--DSFTVSSVLPAFGNLLVVKQGQGLHGFAL-KSGVNSVVVVNNGLVAMYLKFRRPTD 260
Query: 110 AIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGY 169
A FD M RDS S + ++ G ++ ++E+ R+ ++ D + + ++++
Sbjct: 261 ARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE---NLDQFKPDLLTVSSVLRAC 317
Query: 170 GQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229
G + A+ +++ + E VR N +I YAK GD+++AR++F M
Sbjct: 318 GHLRDLSLAKYIYNYMLKAGFVLESTVR--------NILIDVYAKCGDMITARDVFNSME 369
Query: 230 ERDTFSWNTMISGYIHVLDMEEASNLFVKM----PHPDTLTW------------------ 267
+DT SWN++ISGYI D+ EA LF M D +T+
Sbjct: 370 CKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKG 429
Query: 268 -----------------NAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
NA++ YA+ G + +L F M + V+WN++I+ C D
Sbjct: 430 LHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGD 489
Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVIPDVPINNA 369
+ +++ QM+ PD TF L M + + LG +IH + + ++ I NA
Sbjct: 490 FATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNA 549
Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
LI MY++CG + + +FE M ++VV+W MI +G +ALE F M ++P
Sbjct: 550 LIEMYSKCGCLENSSRVFERMS-RRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVP 608
Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
+ FI+++ AC+H+GLV+EG F+ M Y I+P IEH+A +VD++ R ++ A +
Sbjct: 609 DSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEF 668
Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
I+ MP +PD ++W ++L ACR ++E A+ + ++++ P++ +L N YA + +W
Sbjct: 669 IQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKW 728
Query: 550 DDANEVRLLMKSNNIKKPTGYSWVD 574
D + +R +K +I K GYSW++
Sbjct: 729 DKVSLIRKSLKDKHITKNPGYSWIE 753
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 136/558 (24%), Positives = 244/558 (43%), Gaps = 98/558 (17%)
Query: 34 SGYISSRGSGFLEEARYLF---DIMPERDCVTWNTVISGYAKTGEMEEALRLFNSM---- 86
SG + + S F E A L + P ++ WN++I ++K G EAL + +
Sbjct: 42 SGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESK 101
Query: 87 --PAR---------------------------------NVVSWNAMISGFLQNGDVANAI 111
P + ++ NA++ + + G + A
Sbjct: 102 VSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRAR 161
Query: 112 EFFDRMPGRDSASLSALVSGLIQNGELDEAARV--------------------------- 144
+ FD MP RD S ++L+SG +G +EA +
Sbjct: 162 QVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLL 221
Query: 145 LVKCGSRCDG------GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198
+VK G G +V N L+ Y + R +AR++FD++ V
Sbjct: 222 VVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDV----------- 270
Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER---DTFSWNTMISGYIHVLDMEEASNL 255
R+ VS+N+MI Y K V + +F + L++ D + ++++ H+ D+ A +
Sbjct: 271 -RDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYI 329
Query: 256 FVKMPHP----DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
+ M ++ N ++ YA+ G++ A D F M K+ VSWNS+I+G + D
Sbjct: 330 YNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDL 389
Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIPDVPINNAL 370
A+KLF M + E+ D T+ ++S+S+ + DL G +H K+ + D+ ++NAL
Sbjct: 390 MEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNAL 449
Query: 371 ITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430
I MYA+CG + ++ IF M + V+WN +I C G L++ MR +V+P
Sbjct: 450 IDMYAKCGEVGDSLKIFSSMG-TGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPD 508
Query: 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
TF+ L CA G++ ++ +G E ++ +L+++ + G LE++ +
Sbjct: 509 MATFLVTLPMCASLAAKRLGKEIHCCLL-RFGYESELQIGNALIEMYSKCGCLENSSRVF 567
Query: 491 KGMPFEPDKAVWGALLGA 508
+ M D W ++ A
Sbjct: 568 ERMS-RRDVVTWTGMIYA 584
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 117/461 (25%), Positives = 222/461 (48%), Gaps = 38/461 (8%)
Query: 66 VISGYAKTGEMEEALRLFNSM-PARNVVSWNAMISGFLQNGDVANAIEFFDRM------P 118
+I Y+ E +L +F + PA+NV WN++I F +NG A+EF+ ++ P
Sbjct: 45 LIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSP 104
Query: 119 GRDS-ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177
+ + S+ +GL D ++ G D + N L+ Y + G +
Sbjct: 105 DKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESD-----LFVGNALVDMYSRMGLLTR 159
Query: 178 ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDT 233
AR++FD++PV R++VSWNS+I Y+ G A EI+ ++ + D+
Sbjct: 160 ARQVFDEMPV------------RDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDS 207
Query: 234 FSWNTMISGYIHVLDMEEASNL----FVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKR 289
F+ ++++ + ++L +++ L + + N +V+ Y + A F
Sbjct: 208 FTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDE 267
Query: 290 MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLG 349
M ++ VS+N+MI G + E ++++F++ ++ KPD T SS+L + DL L
Sbjct: 268 MDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACGHLRDLSLA 326
Query: 350 MQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS 408
I+ + K + + + N LI +YA+CG ++ AR +F M+ K+ VSWN++I G
Sbjct: 327 KYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSME-CKDTVSWNSIISGYIQ 385
Query: 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468
G EA++LFK M + +IT++ ++S ++ G+ + + GI +
Sbjct: 386 SGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKS-GICIDLS 444
Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
+L+D+ + G + D++ + M D W ++ AC
Sbjct: 445 VSNALIDMYAKCGEVGDSLKIFSSMG-TGDTVTWNTVISAC 484
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/361 (26%), Positives = 176/361 (48%), Gaps = 36/361 (9%)
Query: 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISG------------- 242
+N+ WNS+I ++K G A E + ++ E D +++ ++I
Sbjct: 69 KNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLV 128
Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMI 302
Y +LDM S+LFV NA+V Y+++G L A F MP ++LVSWNS+I
Sbjct: 129 YEQILDMGFESDLFVG---------NALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLI 179
Query: 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK-TVI 361
+G ++ YE A++++ +++ PD T SS+L ++ + G +H K V
Sbjct: 180 SGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVN 239
Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELF-K 420
V +NN L+ MY + +AR +F+EM +++ VS+N MI G E++ +F +
Sbjct: 240 SVVVVNNGLVAMYLKFRRPTDARRVFDEMD-VRDSVSYNTMICGYLKLEMVEESVRMFLE 298
Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE-YGIEPRIEHFASLVDIVGR 479
++ FK P +T SVL AC H + + + M+ + +E + + L+D+ +
Sbjct: 299 NLDQFK--PDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNI--LIDVYAK 354
Query: 480 HGRLEDAMDLIKGMPFEPDKAVWGALL-GACRVHNNVELAQVAAEALMKVEPENSTPYVL 538
G + A D+ M + D W +++ G + + +E ++ ++ E + Y++
Sbjct: 355 CGDMITARDVFNSMECK-DTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLM 413
Query: 539 L 539
L
Sbjct: 414 L 414
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 282 bits (722), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 199/633 (31%), Positives = 316/633 (49%), Gaps = 77/633 (12%)
Query: 1 MISGYVKRREMAKARKLFDEMPQR-DVVSWNVMISGYISSRGSGF---LEEARYLFDI-- 54
+I+ Y ++ AR +F+ R DV WN ++SGY S+ S F LE + L +
Sbjct: 45 LINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGY--SKNSMFHDTLEVFKRLLNCSI 102
Query: 55 -MPER---------------------------------DCVTWNTVISGYAKTGEMEEAL 80
+P+ D V ++++ YAK E +L
Sbjct: 103 CVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSL 162
Query: 81 RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNG 136
++F+ MP R+V SWN +IS F Q+G+ A+E F RM +S SL+ +S +
Sbjct: 163 QVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLL 222
Query: 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG-YGQRGRVEEARKLFDKIPVNCDRGEGN 195
L+ + KC + G +L N+ +V YG+ +E AR++F K+P
Sbjct: 223 WLERGKEIHRKCVKK---GFELDEYVNSALVDMYGKCDCLEVAREVFQKMP--------- 270
Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNL 255
++++V+WNSMI Y GD S EI +M+ T T ++ + + + NL
Sbjct: 271 ---RKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSIL--MACSRSRNL 325
Query: 256 FV-KMPH---------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305
K H D +++ Y + G LA F + + SWN MI+
Sbjct: 326 LHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSY 385
Query: 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDV 364
+ ++ A++++ QM G KPD TF+S+L S + L G QIH ++++ + D
Sbjct: 386 ISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDE 445
Query: 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424
+ +AL+ MY++CG EA IF + K+VVSW MI SHG EAL F M+
Sbjct: 446 LLLSALLDMYSKCGNEKEAFRIFNSIPK-KDVVSWTVMISAYGSHGQPREALYQFDEMQK 504
Query: 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484
F + P +T ++VLSAC HAGL++EG + F M ++YGIEP IEH++ ++DI+GR GRL
Sbjct: 505 FGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLL 564
Query: 485 DAMDLIKGMPFEPDKA-VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543
+A ++I+ P D A + L AC +H L A L++ P++++ Y++L+N+Y
Sbjct: 565 EAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFNLY 624
Query: 544 ADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576
A WD A VRL MK ++K G SW++ S
Sbjct: 625 ASGESWDAARRVRLKMKEMGLRKKPGCSWIEMS 657
Score = 172 bits (436), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 138/503 (27%), Positives = 244/503 (48%), Gaps = 42/503 (8%)
Query: 58 RDCVTWNTVISGYAKTGEMEEALRLFNSMPAR-NVVSWNAMISGFLQNGDVANAIEFFDR 116
RD V ++I+ Y + A +F + R +V WN+++SG+ +N + +E F R
Sbjct: 37 RDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKR 96
Query: 117 MPG-----RDSASLSALVS--GLIQNGELDEAARVL-VKCGSRCDGGEDLVRAYNTLIVG 168
+ DS + ++ G + L L VK G CD V ++L+
Sbjct: 97 LLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCD-----VVVASSLVGM 151
Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
Y + E + ++FD++P +R++ SWN++I C+ ++G+ A E+F +M
Sbjct: 152 YAKFNLFENSLQVFDEMP------------ERDVASWNTVISCFYQSGEAEKALELFGRM 199
Query: 229 ----LERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP----DTLTWNAMVSGYAQIGNL 280
E ++ S IS +L +E + K D +A+V Y + L
Sbjct: 200 ESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCL 259
Query: 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340
E+A + F++MP+K+LV+WNSMI G D + +++ +M +EG +P + T +SIL
Sbjct: 260 EVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMAC 319
Query: 341 SGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV-S 398
S +L G IH V ++V+ D+ +N +LI +Y +CG A +F + + K+V S
Sbjct: 320 SRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQ--KDVAES 377
Query: 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458
WN MI S G +A+E++ M S V P +TF SVL AC+ +E+G+Q S +
Sbjct: 378 WNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLS-I 436
Query: 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518
+E +E ++L+D+ + G ++A + +P + D W ++ A H A
Sbjct: 437 SESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIP-KKDVVSWTVMISAYGSHGQPREA 495
Query: 519 QVAAEALMK--VEPENSTPYVLL 539
+ + K ++P+ T +L
Sbjct: 496 LYQFDEMQKFGLKPDGVTLLAVL 518
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 142/296 (47%), Gaps = 43/296 (14%)
Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREIFEQM-LERDTFSWNTMISGYIHVLDMEEASNLF 256
+R++V S+I Y D SAR +FE + D + WN+++SGY + +F
Sbjct: 35 LRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVF 94
Query: 257 VKMPH-----PDTLTW-----------------------------------NAMVSGYAQ 276
++ + PD+ T+ +++V YA+
Sbjct: 95 KRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAK 154
Query: 277 IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336
E +L F MP++++ SWN++I+ + + E A++LF +M+ G +P+ + +
Sbjct: 155 FNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVA 214
Query: 337 LSMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKN 395
+S S ++ L G +IH + V K D +N+AL+ MY +C + AR +F++M K+
Sbjct: 215 ISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMP-RKS 273
Query: 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGR 451
+V+WN+MI G + G + +E+ M P+ T S+L AC+ + + G+
Sbjct: 274 LVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGK 329
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 4/159 (2%)
Query: 352 IHQ-MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
+HQ ++T + DV + +LI +Y C AR +FE + +V WN+++ G + +
Sbjct: 26 VHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSKNS 85
Query: 411 FATEALELFKSMRSFKV-LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469
+ LE+FK + + + +P TF +V+ A G GR ++V + G +
Sbjct: 86 MFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRM-IHTLVVKSGYVCDVVV 144
Query: 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA 508
+SLV + + E+++ + MP E D A W ++
Sbjct: 145 ASSLVGMYAKFNLFENSLQVFDEMP-ERDVASWNTVISC 182
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 281 bits (720), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 175/594 (29%), Positives = 305/594 (51%), Gaps = 39/594 (6%)
Query: 2 ISGYVKRREMAKARKLFDEMPQRDV----VSWNVMISGYISSRGSGFLEEARYL-----F 52
+S Y+ + + K F +M + DV V++ +M++ + ++ +
Sbjct: 287 LSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGL 346
Query: 53 DIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIE 112
D+M N++I+ Y K + A +F++M R+++SWN++I+G QNG A+
Sbjct: 347 DLM----LTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVC 402
Query: 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172
F + L GL + ++K S G L + + +
Sbjct: 403 LF----------MQLLRCGLKPD---QYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNV 449
Query: 173 GRVEEARKLFDKIPVNCDRGEGNVRFKR---NIVSWNSMIMCYAKAGDVVSAREIFEQML 229
+ L D N E + F+R ++V+WN+M+ Y ++ D ++F M
Sbjct: 450 SDSFVSTALIDAYSRNRCMKEAEILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMH 509
Query: 230 ER----DTFSWNTMIS--GYIHVLDMEEASNLFVKMPHPDTLTW--NAMVSGYAQIGNLE 281
++ D F+ T+ G++ ++ + + + D W + ++ Y + G++
Sbjct: 510 KQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMS 569
Query: 282 LALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341
A F +P + V+W +MI+GC N + E A +F QM++ G PD T +++ SS
Sbjct: 570 AAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASS 629
Query: 342 GIVDLHLGMQIHQMVTKTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWN 400
+ L G QIH K + P + +L+ MYA+CG+I +A +F+ ++++ N+ +WN
Sbjct: 630 CLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMM-NITAWN 688
Query: 401 AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460
AM+ G A HG E L+LFK M+S + P +TFI VLSAC+H+GLV E +H +SM +
Sbjct: 689 AMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGD 748
Query: 461 YGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQV 520
YGI+P IEH++ L D +GR G ++ A +LI+ M E +++ LL ACRV + E +
Sbjct: 749 YGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKR 808
Query: 521 AAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
A L+++EP +S+ YVLL NMYA +WD+ R +MK + +KK G+SW++
Sbjct: 809 VATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIE 862
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 152/624 (24%), Positives = 256/624 (41%), Gaps = 130/624 (20%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGF--LEEARYLFDIMPER 58
+IS Y K + AR++FD+MP RD+VSWN +++ Y S +++A LF I+ +
Sbjct: 80 LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQD 139
Query: 59 DCVTWNTVIS-------------------GYA--------------------KTGEMEEA 79
T +S GYA K G+++E
Sbjct: 140 VVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEG 199
Query: 80 LRLFNSMPARNVVSWNAMISGFLQNG------DVANAIEFFDRMPGRDSASLSALVSGLI 133
LF MP R+VV WN M+ +L+ G D+++A P + L A +SG
Sbjct: 200 KVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISG-- 257
Query: 134 QNGELDEAARVLVKCGSRCDGGEDL--VRAYNTLIVGYGQRGRVEEARKLFDKI---PVN 188
D++ VK + + + + N + Y G+ K F + V
Sbjct: 258 -----DDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVE 312
Query: 189 CDR------------------GEG------NVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224
CD+ G+ + + NS+I Y K AR +
Sbjct: 313 CDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTV 372
Query: 225 FEQMLERDTFSWNTMISG--------------------------YIHVLDMEEASNL--- 255
F+ M ERD SWN++I+G Y ++ AS+L
Sbjct: 373 FDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEG 432
Query: 256 --FVKMPH---------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAG 304
K H D+ A++ Y++ ++ A F+R +LV+WN+M+AG
Sbjct: 433 LSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAG 491
Query: 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-D 363
+ D +KLF M +GE+ D T +++ + ++ G Q+H K+ D
Sbjct: 492 YTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLD 551
Query: 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423
+ +++ ++ MY +CG + A+ F+ + + + V+W MI GC +G A +F MR
Sbjct: 552 LWVSSGILDMYVKCGDMSAAQFAFDSIPVPDD-VAWTTMISGCIENGEEERAFHVFSQMR 610
Query: 424 SFKVLPTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
VLP T ++ A + +E+GRQ H ++ +P + SLVD+ + G
Sbjct: 611 LMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVG--TSLVDMYAKCGS 668
Query: 483 LEDAMDLIKGMPFEPDKAVWGALL 506
++DA L K + A W A+L
Sbjct: 669 IDDAYCLFKRIEMMNITA-WNAML 691
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 158/637 (24%), Positives = 267/637 (41%), Gaps = 127/637 (19%)
Query: 43 GFLEEARYL-FDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGF 101
G AR L F+ PER + N +IS Y+K G + A R+F+ MP R++VSWN++++ +
Sbjct: 58 GKCTHARILTFEENPERFLI--NNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAY 115
Query: 102 LQNGD-----VANAIEFFDRMPGRDSA-----SLSALVSGLIQNGELDEAARVL-VKCGS 150
Q+ + + A F R+ +D +LS ++ + +G + + C
Sbjct: 116 AQSSECVVENIQQAFLLF-RILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKI 174
Query: 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM 210
DG E + A L+ Y + G+V+E + LF+++P R++V WN M+
Sbjct: 175 GLDGDEFVAGA---LVNIYLKFGKVKEGKVLFEEMPY------------RDVVLWNLMLK 219
Query: 211 CYAKAG------DVVSA--------REIFEQMLER------------------------D 232
Y + G D+ SA EI ++L R +
Sbjct: 220 AYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSE 279
Query: 233 TFSWNTMISGYIHVLDMEEASNLFVKMPHPDT----LTWNAMVSGYAQIGN--------- 279
N +S Y+H F M D +T+ M++ ++ +
Sbjct: 280 IIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHC 339
Query: 280 --LELALDF------------------------FKRMPQKNLVSWNSMIAGCETNKDYEG 313
L+L LD F M +++L+SWNS+IAG N
Sbjct: 340 MALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVE 399
Query: 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD-LHLGMQIHQMVTK-TVIPDVPINNALI 371
A+ LF+Q+ G KPD++T +S+L +S + + L L Q+H K + D ++ ALI
Sbjct: 400 AVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALI 459
Query: 372 TMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431
Y+R + EA I+FE ++V+WNAM+ G + L+LF M
Sbjct: 460 DAYSRNRCMKEAEILFERHNF--DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDD 517
Query: 432 ITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490
T +V C + +G+Q H ++ + Y ++ + + ++D+ + G + A
Sbjct: 518 FTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAF 575
Query: 491 KGMPFEPDKAVWGALLGACRVHNNVELA-QVAAEA-LMKVEPENSTPYVLLYNMYA---- 544
+P PD W ++ C + E A V ++ LM V P+ T L
Sbjct: 576 DSIPV-PDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTAL 634
Query: 545 DVGRWDDANEVRLLMKSNNIKKP-TGYSWVD-FSPCG 579
+ GR AN ++L N P G S VD ++ CG
Sbjct: 635 EQGRQIHANALKL----NCTNDPFVGTSLVDMYAKCG 667
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 123/499 (24%), Positives = 212/499 (42%), Gaps = 50/499 (10%)
Query: 64 NTVISGYAKTGEMEEALRL-FNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS 122
N + S G+ A L F P R ++ N +IS + + G + A FD+MP RD
Sbjct: 48 NAITSSDLMLGKCTHARILTFEENPERFLI--NNLISMYSKCGSLTYARRVFDKMPDRDL 105
Query: 123 ASLSALVSGLIQNG----ELDEAARVLVKCGSRCDGGEDLVRAYN-------TLIVGYGQ 171
S +++++ Q+ E + A +L + +D+V L + G
Sbjct: 106 VSWNSILAAYAQSSECVVENIQQAFLLFRILR-----QDVVYTSRMTLSPMLKLCLHSGY 160
Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
E KI ++ D +++ Y K G V + +FE+M R
Sbjct: 161 VWASESFHGYACKIGLDGDEFVAG-----------ALVNIYLKFGKVKEGKVLFEEMPYR 209
Query: 232 DTFSWNTMISGYIHVLDMEEASNLFVKM------PHPDTLTWNAMVSG-YAQIGNLELAL 284
D WN M+ Y+ + EEA +L P+ TL A +SG + G ++
Sbjct: 210 DVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFA 269
Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV 344
+ ++ N ++ + Y +K F M + D+ TF +L+ + +
Sbjct: 270 NGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVD 329
Query: 345 DLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMI 403
L LG Q+H M K + + ++N+LI MY + AR +F+ M ++++SWN++I
Sbjct: 330 SLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMS-ERDLISWNSVI 388
Query: 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM-VNEYG 462
G A +G EA+ LF + + P T SVL A A + EG K + V+
Sbjct: 389 AGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKA---ASSLPEGLSLSKQVHVHAIK 445
Query: 463 IEPRIEHFAS--LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALL-GACRVHNNVELAQ 519
I + F S L+D R+ +++A L + F D W A++ G + H+ + +
Sbjct: 446 INNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF--DLVAWNAMMAGYTQSHDGHKTLK 503
Query: 520 VAAEALMKVEPENSTPYVL 538
+ ALM + E S + L
Sbjct: 504 LF--ALMHKQGERSDDFTL 520
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 150/367 (40%), Gaps = 75/367 (20%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS--------------------- 39
+I Y + R M +A LF E D+V+WN M++GY S
Sbjct: 458 LIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSD 516
Query: 40 --------RGSGFL-----EEARYLFDIMPERDCVTW--NTVISGYAKTGEMEEALRLFN 84
+ GFL + + + I D W + ++ Y K G+M A F+
Sbjct: 517 DFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFD 576
Query: 85 SMPARNVVSWNAMISGFLQNGDVANAIEFFDRM------PGRDS-ASLSALVSGL--IQN 135
S+P + V+W MISG ++NG+ A F +M P + A+L+ S L ++
Sbjct: 577 SIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQ 636
Query: 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
G A + + C + G LV Y + G +++A LF +I +
Sbjct: 637 GRQIHANALKLNCTNDPFVGTSLVDM-------YAKCGSIDDAYCLFKRIEM-------- 681
Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM----LERDTFSWNTMISGYIHVLDMEE 251
NI +WN+M++ A+ G+ ++F+QM ++ D ++ ++S H + E
Sbjct: 682 ----MNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSE 737
Query: 252 ASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS-WNSMIAGC 305
A M P+ ++ + + G ++ A + + M + S + +++A C
Sbjct: 738 AYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAAC 797
Query: 306 ETNKDYE 312
D E
Sbjct: 798 RVQGDTE 804
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 56/249 (22%)
Query: 198 FKRNIVSWNSMIMCYAKAGDVVSAREI-FEQMLERDTFSWNTMISGYIHVLDMEEASNLF 256
F RN ++ + +++ G AR + FE+ ER F N +IS Y + A +F
Sbjct: 45 FLRNAITSSDLML-----GKCTHARILTFEENPER--FLINNLISMYSKCGSLTYARRVF 97
Query: 257 VKMPHPDTLTWNAMVSGYAQ-----IGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311
KMP D ++WN++++ YAQ + N++ A F+ + Q V + S
Sbjct: 98 DKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQD--VVYTS----------- 144
Query: 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM-----QIHQMVTKTVIP-DVP 365
R T S +L + LH G H K + D
Sbjct: 145 ------------------RMTLSPMLKLC-----LHSGYVWASESFHGYACKIGLDGDEF 181
Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425
+ AL+ +Y + G + E +++FEEM ++VV WN M+ GF EA++L + S
Sbjct: 182 VAGALVNIYLKFGKVKEGKVLFEEMP-YRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSS 240
Query: 426 KVLPTYITF 434
+ P IT
Sbjct: 241 GLNPNEITL 249
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 281 bits (719), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 167/482 (34%), Positives = 267/482 (55%), Gaps = 33/482 (6%)
Query: 106 DVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161
D+ A++ D + DSA+ S L+ I N + E L+ +G ++
Sbjct: 41 DLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGN--LICRHLYFNGHRPMMFL 98
Query: 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSA 221
N LI Y + + +A +LFD++P +RN++SW +MI Y+K A
Sbjct: 99 VNVLINMYVKFNLLNDAHQLFDQMP------------QRNVISWTTMISAYSKCKIHQKA 146
Query: 222 REIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPH---------PDTLTWNAMVS 272
E+ ML RD N + Y VL + V+M H D +A++
Sbjct: 147 LELLVLML-RDNVRPN--VYTYSSVLRSCNGMS-DVRMLHCGIIKEGLESDVFVRSALID 202
Query: 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332
+A++G E AL F M + + WNS+I G N + A++LF +M+ G ++ T
Sbjct: 203 VFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQAT 262
Query: 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
+S+L +G+ L LGMQ H + K D+ +NNAL+ MY +CG++ +A +F +MK
Sbjct: 263 LTSVLRACTGLALLELGMQAHVHIVK-YDQDLILNNALVDMYCKCGSLEDALRVFNQMKE 321
Query: 393 LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452
++V++W+ MI G A +G++ EAL+LF+ M+S P YIT + VL AC+HAGL+E+G
Sbjct: 322 -RDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWY 380
Query: 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512
+F+SM YGI+P EH+ ++D++G+ G+L+DA+ L+ M EPD W LLGACRV
Sbjct: 381 YFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQ 440
Query: 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572
N+ LA+ AA+ ++ ++PE++ Y LL N+YA+ +WD E+R M+ IKK G SW
Sbjct: 441 RNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSW 500
Query: 573 VD 574
++
Sbjct: 501 IE 502
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 190/414 (45%), Gaps = 30/414 (7%)
Query: 8 RREMAKARKLFDEMPQR----DVVSWNVMISGYISSRG--SGFLEEARYLFDIMPERDCV 61
+R++ +A K D + D +++ +I IS+R G L R+L+
Sbjct: 39 QRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLI-CRHLYFNGHRPMMF 97
Query: 62 TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121
N +I+ Y K + +A +LF+ MP RNV+SW MIS + + A+E M +
Sbjct: 98 LVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDN 157
Query: 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181
S ++++ R+L CG +G E V + LI + + G E+A +
Sbjct: 158 VRPNVYTYSSVLRSCNGMSDVRML-HCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSV 216
Query: 182 FDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM------LERDTFS 235
FD++ + + WNS+I +A+ A E+F++M E+ T +
Sbjct: 217 FDEMVTG------------DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLT 264
Query: 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL 295
+ +L++ +++ + D + NA+V Y + G+LE AL F +M ++++
Sbjct: 265 SVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDV 324
Query: 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355
++W++MI+G N + A+KLF +M+ G KP+ T +L S L G +
Sbjct: 325 ITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRS 384
Query: 356 VTKTVIPDVPINN---ALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGC 406
+ K D P+ +I + + G + +A + EM+ + V+W ++G C
Sbjct: 385 MKKLYGID-PVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGAC 437
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 152/357 (42%), Gaps = 63/357 (17%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSR-------------------- 40
+I+ YVK + A +LFD+MPQR+V+SW MIS Y +
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPN 161
Query: 41 ---GSGFLEEARYLFDIM----------PERDCVTWNTVISGYAKTGEMEEALRLFNSMP 87
S L + D+ E D + +I +AK GE E+AL +F+ M
Sbjct: 162 VYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMV 221
Query: 88 ARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDEAAR 143
+ + WN++I GF QN A+E F RM + A+L++++ L+ +
Sbjct: 222 TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQ 281
Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203
V +DL+ N L+ Y + G +E+A ++F+++ +R+++
Sbjct: 282 AHVHIVKY---DQDLI-LNNALVDMYCKCGSLEDALRVFNQMK------------ERDVI 325
Query: 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI----HVLDMEEASNLFVKM 259
+W++MI A+ G A ++FE+M T I G + H +E+ F M
Sbjct: 326 TWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSM 385
Query: 260 PH-----PDTLTWNAMVSGYAQIGNLELALDFFKRMP-QKNLVSWNSMIAGCETNKD 310
P + M+ + G L+ A+ M + + V+W +++ C ++
Sbjct: 386 KKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRN 442
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 107/245 (43%), Gaps = 42/245 (17%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS-------------RGSGFLEE 47
+I + K E A +FDEM D + WN +I G+ + + +GF+ E
Sbjct: 200 LIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAE 259
Query: 48 ARYLFDIMP---------------------ERDCVTWNTVISGYAKTGEMEEALRLFNSM 86
L ++ ++D + N ++ Y K G +E+ALR+FN M
Sbjct: 260 QATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQM 319
Query: 87 PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLI---QNGELDEAAR 143
R+V++W+ MISG QNG A++ F+RM + + G++ + L E
Sbjct: 320 KERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGW 379
Query: 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE-----GNVRF 198
+ + G + + Y +I G+ G++++A KL +++ D G R
Sbjct: 380 YYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRV 439
Query: 199 KRNIV 203
+RN+V
Sbjct: 440 QRNMV 444
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 281 bits (719), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 168/549 (30%), Positives = 289/549 (52%), Gaps = 46/549 (8%)
Query: 50 YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVAN 109
YL + +T N +I Y K E A ++F+SMP RNVVSW+A++SG + NGD+
Sbjct: 31 YLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKG 90
Query: 110 AIEFFDRM------PGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN 163
++ F M P + S + GL+ L++ ++ C G E +V N
Sbjct: 91 SLSLFSEMGRQGIYPNEFTFSTNLKACGLLN--ALEKGLQIHGFCLK--IGFEMMVEVGN 146
Query: 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223
+L+ Y + GR+ EA K+F +I R+++SWN+MI + AG A +
Sbjct: 147 SLVDMYSKCGRINEAEKVFRRI------------VDRSLISWNAMIAGFVHAGYGSKALD 194
Query: 224 IFEQMLER------DTFSWNTMI-----SGYIHVLDMEEASNLFVK----MPHPDTLTWN 268
F M E D F+ +++ +G I+ ++ V+ P T+T
Sbjct: 195 TFGMMQEANIKERPDEFTLTSLLKACSSTGMIYA--GKQIHGFLVRSGFHCPSSATIT-G 251
Query: 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
++V Y + G L A F ++ +K ++SW+S+I G ++ A+ LF ++Q +
Sbjct: 252 SLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQI 311
Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP---DVPINNALITMYARCGAIVEARI 385
D SSI+ + + L G Q+ + K +P + + N+++ MY +CG + EA
Sbjct: 312 DSFALSSIIGVFADFALLRQGKQMQALAVK--LPSGLETSVLNSVVDMYLKCGLVDEAEK 369
Query: 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445
F EM+L K+V+SW +I G HG +++ +F M + P + +++VLSAC+H+G
Sbjct: 370 CFAEMQL-KDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSG 428
Query: 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGAL 505
+++EG + F ++ +GI+PR+EH+A +VD++GR GRL++A LI MP +P+ +W L
Sbjct: 429 MIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTL 488
Query: 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565
L CRVH ++EL + + L++++ +N YV++ N+Y G W++ R L +K
Sbjct: 489 LSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLK 548
Query: 566 KPTGYSWVD 574
K G SWV+
Sbjct: 549 KEAGMSWVE 557
Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 115/465 (24%), Positives = 216/465 (46%), Gaps = 70/465 (15%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISS---RG--SGFLEEAR------ 49
+I Y K RE A K+FD MP+R+VVSW+ ++SG++ + +G S F E R
Sbjct: 47 LIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPN 106
Query: 50 -------------------------YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
+ I E N+++ Y+K G + EA ++F
Sbjct: 107 EFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFR 166
Query: 85 SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR------DSASLSALVSGLIQNGEL 138
+ R+++SWNAMI+GF+ G + A++ F M D +L++L+ G +
Sbjct: 167 RIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMI 226
Query: 139 DEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
++ LV+ G C + +L+ Y + G + ARK FD+I
Sbjct: 227 YAGKQIHGFLVRSGFHCPSSATIT---GSLVDLYVKCGYLFSARKAFDQIK--------- 274
Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER----DTFSWNTMISGYIHVLDMEE 251
++ ++SW+S+I+ YA+ G+ V A +F+++ E D+F+ +++I + + +
Sbjct: 275 ---EKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQ 331
Query: 252 ASN---LFVKMPHP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET 307
L VK+P +T N++V Y + G ++ A F M K+++SW +I G
Sbjct: 332 GKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGK 391
Query: 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT--VIPDVP 365
+ + ++++F +M +PD + ++LS S + G ++ + +T + P V
Sbjct: 392 HGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVE 451
Query: 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
++ + R G + EA+ + + M + NV W ++ C HG
Sbjct: 452 HYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHG 496
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 129/311 (41%), Gaps = 52/311 (16%)
Query: 43 GFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFL 102
G+L AR FD + E+ ++W+++I GYA+ GE EA+ LF + + N+ I F
Sbjct: 261 GYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLF-----KRLQELNSQIDSFA 315
Query: 103 QNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAY 162
+ + +F G+ +L+ + ++ L+ + +KC
Sbjct: 316 LSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKC-------------- 361
Query: 163 NTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAR 222
G V+EA K F ++ + ++++SW +I Y K G +
Sbjct: 362 ----------GLVDEAEKCFAEMQL------------KDVISWTVVITGYGKHGLGKKSV 399
Query: 223 EIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----PDTLTWNAMVSG 273
IF +ML E D + ++S H ++E LF K+ P + +V
Sbjct: 400 RIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDL 459
Query: 274 YAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCETNKDYE-GAIKLFIQMQVEGEKPDRH 331
+ G L+ A MP K N+ W ++++ C + D E G I ++++ + P +
Sbjct: 460 LGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANY 519
Query: 332 TFSSILSMSSG 342
S L +G
Sbjct: 520 VMMSNLYGQAG 530
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 14/155 (9%)
Query: 5 YVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---ERDCV 61
Y+K + +A K F EM +DV+SW V+I+GY G G + R ++++ E D V
Sbjct: 358 YLKCGLVDEAEKCFAEMQLKDVISWTVVITGY-GKHGLG-KKSVRIFYEMLRHNIEPDEV 415
Query: 62 TWNTVISGYAKTGEMEEALRLFNSMPARN-----VVSWNAMISGFLQNGDVANAIEFFDR 116
+ V+S + +G ++E LF+ + + V + ++ + G + A D
Sbjct: 416 CYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDT 475
Query: 117 MPGRDSASL-SALVSGLIQNGELD---EAARVLVK 147
MP + + + L+S +G+++ E ++L++
Sbjct: 476 MPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLR 510
>sp|Q9LNP2|PPR47_ARATH Putative pentatricopeptide repeat-containing protein At1g17630
OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1
Length = 731
Score = 281 bits (719), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 171/521 (32%), Positives = 281/521 (53%), Gaps = 49/521 (9%)
Query: 64 NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
N +++ Y K G M +A LF MP RN +SWN MI GF Q D +A++ F+ M +
Sbjct: 197 NELLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFK 256
Query: 124 SLSALVSGLIQNGELDEAA-RVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
DE ++ C S+C ED+++ ++ +
Sbjct: 257 P--------------DEVTWTSVLSCHSQCGKFEDVLKYFHLM----------------- 285
Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
++ N GE F ++ + G V+ FE+ L S N +I
Sbjct: 286 -RMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGG--FEEYLP----SRNALIHV 338
Query: 243 YIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ--------KN 294
Y +++A +LF ++ + +WN++++ + G L+ AL F + + N
Sbjct: 339 YGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKAN 398
Query: 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354
+V+W S+I GC + +++ F QMQ + T ILS+ + + L+LG +IH
Sbjct: 399 VVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSVTICCILSICAELPALNLGREIHG 458
Query: 355 MVTKTVIPD-VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFAT 413
V +T + + + + NAL+ MYA+CG + E ++FE ++ K+++SWN++I G HGFA
Sbjct: 459 HVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRD-KDLISWNSIIKGYGMHGFAE 517
Query: 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473
+AL +F M S P I ++VLSAC+HAGLVE+GR+ F SM +G+EP+ EH+A +
Sbjct: 518 KALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQQEHYACI 577
Query: 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533
VD++GR G L++A +++K MP EP V GALL +CR+H NV++A+ A L +EPE +
Sbjct: 578 VDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNVDIAEGIASQLSVLEPERT 637
Query: 534 TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
Y+LL N+Y+ GRW+++ VR L K ++KK +G SW++
Sbjct: 638 GSYMLLSNIYSAGGRWEESANVRALAKKKDLKKVSGSSWIE 678
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 113/501 (22%), Positives = 185/501 (36%), Gaps = 153/501 (30%)
Query: 207 SMIMCYAKAGDVVSAREIFEQ---MLERDTFSWNTMIS---------------------- 241
++I YA+ G ++ AR +FE +L D WN+++
Sbjct: 94 NLISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMRQRG 153
Query: 242 ----GYIHVLDMEEASNL----FVKMPHPDTL---------TWNAMVSGYAQIGNLELAL 284
GYI L + L + H + N +++ Y + G + A
Sbjct: 154 LTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDAY 213
Query: 285 DFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS------ 338
+ F MP +N +SWN MI G D E A+K+F MQ E KPD T++S+LS
Sbjct: 214 NLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHSQCG 273
Query: 339 -------------MSSGIVD----------------LHLGMQIHQMVTKTVIPD-VPINN 368
MS V L + ++H V K + +P N
Sbjct: 274 KFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRN 333
Query: 369 ALITMYARCGAIVEARIIFEEMK------------------------------------- 391
ALI +Y + G + +A +F +++
Sbjct: 334 ALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEMNHVC 393
Query: 392 -LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
+ NVV+W ++I GC G ++LE F+ M+ KVL +T +LS CA + G
Sbjct: 394 NVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSVTICCILSICAELPALNLG 453
Query: 451 RQ---HF------------KSMVNEYGI---------------EPRIEHFASLVDIVGRH 480
R+ H ++VN Y + + + S++ G H
Sbjct: 454 REIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGYGMH 513
Query: 481 GRLEDAMDLIKGM---PFEPDKAVWGALLGACRVHNNVELAQVAAEALMK---VEPENST 534
G E A+ + M F PD A+L AC VE + ++ K +EP+
Sbjct: 514 GFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQQE- 572
Query: 535 PYVLLYNMYADVGRWDDANEV 555
Y + ++ VG +A+E+
Sbjct: 573 HYACIVDLLGRVGFLKEASEI 593
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 281 bits (719), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 169/533 (31%), Positives = 294/533 (55%), Gaps = 32/533 (6%)
Query: 57 ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDR 116
ER+ V N++++ Y K ++ A ++F+ M R+V+SWN++I+G++ NG + F +
Sbjct: 228 ERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQ 286
Query: 117 MPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSR-CDGGEDLVRAYNTLIVGYGQ 171
M D A++ ++ +G + L R + G + C ED R NTL+ Y +
Sbjct: 287 MLVSGIEIDLATIVSVFAG-CADSRLISLGRAVHSIGVKACFSRED--RFCNTLLDMYSK 343
Query: 172 RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231
G ++ A+ +F ++ R++VS+ SMI YA+ G A ++FE+M E
Sbjct: 344 CGDLDSAKAVFREMS------------DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391
Query: 232 ----DTFSWNTMIS--GYIHVLDMEEASNLFVKMPHP--DTLTWNAMVSGYAQIGNLELA 283
D ++ +++ +LD + + ++K D NA++ YA+ G+++ A
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 451
Query: 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF-IQMQVEGEKPDRHTFSSILSMSSG 342
F M K+++SWN++I G N A+ LF + ++ + PD T + +L +
Sbjct: 452 ELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACAS 511
Query: 343 IVDLHLGMQIHQMVTKT-VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNA 401
+ G +IH + + D + N+L+ MYA+CGA++ A ++F+++ K++VSW
Sbjct: 512 LSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIAS-KDLVSWTV 570
Query: 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY 461
MI G HGF EA+ LF MR + I+F+S+L AC+H+GLV+EG + F M +E
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 630
Query: 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVA 521
IEP +EH+A +VD++ R G L A I+ MP PD +WGALL CR+H++V+LA+
Sbjct: 631 KIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKV 690
Query: 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574
AE + ++EPEN+ YVL+ N+YA+ +W+ +R + ++K G SW++
Sbjct: 691 AEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIE 743
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/468 (27%), Positives = 226/468 (48%), Gaps = 53/468 (11%)
Query: 70 YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASL 125
Y G+++EA R+F+ + + WN +++ ++GD + +I F +M DS +
Sbjct: 139 YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198
Query: 126 SALVSGL-----IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180
S + + GE + G R G N+L+ Y + RV+ ARK
Sbjct: 199 SCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-------NSLVAFYLKNQRVDSARK 251
Query: 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT-FSWNTM 239
+FD++ +R+++SWNS+I Y G +F QML T+
Sbjct: 252 VFDEMT------------ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATI 299
Query: 240 ISGYIHVLDMEEAS------NLFVK--MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMP 291
+S + D S ++ VK D N ++ Y++ G+L+ A F+ M
Sbjct: 300 VSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC-NTLLDMYSKCGDLDSAKAVFREMS 358
Query: 292 QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351
+++VS+ SMIAG A+KLF +M+ EG PD +T +++L+ + L G +
Sbjct: 359 DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR 418
Query: 352 IHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG 410
+H+ + + + D+ ++NAL+ MYA+CG++ EA ++F EM+ +K+++SWN +IGG + +
Sbjct: 419 VHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMR-VKDIISWNTIIGGYSKNC 477
Query: 411 FATEALELFKSMRSFKVL-PTYITFISVLSACAHAGLVEEGRQ-HFKSMVNEYGIEPRIE 468
+A EAL LF + K P T VL ACA ++GR+ H M N Y + +
Sbjct: 478 YANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA 537
Query: 469 HFASLVDIVGRHGRLEDAMDLIKGMPFE----PDKAVWGALLGACRVH 512
+ SLVD+ + G L L+ M F+ D W ++ +H
Sbjct: 538 N--SLVDMYAKCGAL-----LLAHMLFDDIASKDLVSWTVMIAGYGMH 578
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 127/468 (27%), Positives = 212/468 (45%), Gaps = 81/468 (17%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIM----P 56
+++ Y+K + + ARK+FDEM +RDV+SWN +I+GY+S +G E+ +F M
Sbjct: 236 LVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS---NGLAEKGLSVFVQMLVSGI 292
Query: 57 ERDCVT-----------------------------------WNTVISGYAKTGEMEEALR 81
E D T NT++ Y+K G+++ A
Sbjct: 293 EIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKA 352
Query: 82 LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGE 137
+F M R+VVS+ +MI+G+ + G A++ F+ M D +++A+++ +
Sbjct: 353 VFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRL 412
Query: 138 LDEAARV--LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN 195
LDE RV +K D G D+ + N L+ Y + G ++EA +F ++ V
Sbjct: 413 LDEGKRVHEWIK---ENDLGFDIFVS-NALMDMYAKCGSMQEAELVFSEMRV-------- 460
Query: 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI-------SGYIHVLD 248
++I+SWN++I Y+K A +F +LE FS + + D
Sbjct: 461 ----KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFD 516
Query: 249 MEEASNLFVKMP--HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCE 306
+ ++ D N++V YA+ G L LA F + K+LVSW MIAG
Sbjct: 517 KGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYG 576
Query: 307 TNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL--SMSSGIVD---LHLGMQIHQMVTKTVI 361
+ + AI LF QM+ G + D +F S+L SG+VD + H+ +
Sbjct: 577 MHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC---KIE 633
Query: 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409
P V ++ M AR G +++A E M + + W A++ GC H
Sbjct: 634 PTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIH 681
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 107/437 (24%), Positives = 191/437 (43%), Gaps = 57/437 (13%)
Query: 191 RGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDME 250
RG G V N+ S S++ Y GD+ A +F+++ WN +++ D
Sbjct: 121 RGNGFV-IDSNLGSKLSLM--YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFS 177
Query: 251 EASNLFVKMPHP----DTLTW-----------------------------------NAMV 271
+ LF KM D+ T+ N++V
Sbjct: 178 GSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLV 237
Query: 272 SGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331
+ Y + ++ A F M +++++SWNS+I G +N E + +F+QM V G + D
Sbjct: 238 AFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLA 297
Query: 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVIP-DVPINNALITMYARCGAIVEARIIFEEM 390
T S+ + + + LG +H + K + N L+ MY++CG + A+ +F EM
Sbjct: 298 TIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREM 357
Query: 391 KLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEG 450
++VVS+ +MI G A G A EA++LF+ M + P T +VL+ CA L++EG
Sbjct: 358 S-DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG 416
Query: 451 -RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGA- 508
R H N+ G + + + +L+D+ + G +++A + M + D W ++G
Sbjct: 417 KRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGGY 473
Query: 509 ---CRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI- 564
C + + L + E + P+ T +L A + +D E+ + N
Sbjct: 474 SKNCYANEALSLFNLLLEE-KRFSPDERTVACVL-PACASLSAFDKGREIHGYIMRNGYF 531
Query: 565 -KKPTGYSWVD-FSPCG 579
+ S VD ++ CG
Sbjct: 532 SDRHVANSLVDMYAKCG 548
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 9/204 (4%)
Query: 305 CETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT-VIP 362
CE+ + E A+KL V G+ D T S+L + + L G ++ + +
Sbjct: 72 CESG-NLENAVKLLC---VSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVI 127
Query: 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422
D + + L MY CG + EA +F+E+K+ K + WN ++ A G + ++ LFK M
Sbjct: 128 DSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALF-WNILMNELAKSGDFSGSIGLFKKM 186
Query: 423 RSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR 482
S V TF V + + V G Q + + G R SLV ++ R
Sbjct: 187 MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQ-LHGFILKSGFGERNSVGNSLVAFYLKNQR 245
Query: 483 LEDAMDLIKGMPFEPDKAVWGALL 506
++ A + M E D W +++
Sbjct: 246 VDSARKVFDEMT-ERDVISWNSII 268
>sp|Q9SUF9|PP305_ARATH Pentatricopeptide repeat-containing protein At4g08210
OS=Arabidopsis thaliana GN=PCMP-E100 PE=3 SV=1
Length = 686
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 189/564 (33%), Positives = 291/564 (51%), Gaps = 34/564 (6%)
Query: 25 DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFN 84
DVV N ++ Y+ + G L EA F + +WNT+ISGY K G M+EA+ LF+
Sbjct: 141 DVVLMNSVVDMYVKN---GRLIEANSSFKEILRPSSTSWNTLISGYCKAGLMDEAVTLFH 197
Query: 85 SMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS--ALVSGL--IQNGELDE 140
MP NVVSWN +ISGF+ G A+EF RM R+ L AL GL G L
Sbjct: 198 RMPQPNVVSWNCLISGFVDKGS-PRALEFLVRMQ-REGLVLDGFALPCGLKACSFGGLLT 255
Query: 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF--DKIPVNCDRGEGNVRF 198
+ L C + G E A + LI Y G + A +F +K+ VN
Sbjct: 256 MGKQLHCCVVK-SGLESSPFAISALIDMYSNCGSLIYAADVFHQEKLAVN---------- 304
Query: 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV--------LDME 250
++ WNSM+ + + +A + Q+ + D + +SG + + L ++
Sbjct: 305 -SSVAVWNSMLSGFLINEENEAALWLLLQIYQSDLCFDSYTLSGALKICINYVNLRLGLQ 363
Query: 251 EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKD 310
S + V D + + +V +A +GN++ A F R+P K++++++ +I GC +
Sbjct: 364 VHSLVVVSGYELDYIVGSILVDLHANVGNIQDAHKLFHRLPNKDIIAFSGLIRGCVKSGF 423
Query: 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPIN-NA 369
A LF ++ G D+ S+IL + S + L G QIH + K P+ A
Sbjct: 424 NSLAFYLFRELIKLGLDADQFIVSNILKVCSSLASLGWGKQIHGLCIKKGYESEPVTATA 483
Query: 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429
L+ MY +CG I ++F+ M L ++VVSW +I G +G EA F M + + P
Sbjct: 484 LVDMYVKCGEIDNGVVLFDGM-LERDVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEP 542
Query: 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDL 489
+TF+ +LSAC H+GL+EE R ++M +EYG+EP +EH+ +VD++G+ G ++A +L
Sbjct: 543 NKVTFLGLLSACRHSGLLEEARSTLETMKSEYGLEPYLEHYYCVVDLLGQAGLFQEANEL 602
Query: 490 IKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549
I MP EPDK +W +LL AC H N L V AE L+K P++ + Y L N YA +G W
Sbjct: 603 INKMPLEPDKTIWTSLLTACGTHKNAGLVTVIAEKLLKGFPDDPSVYTSLSNAYATLGMW 662
Query: 550 DDANEVRLLMKSNNIKKPTGYSWV 573
D ++VR K K+ +G SW+
Sbjct: 663 DQLSKVREAAKKLGAKE-SGMSWI 685
Score = 132 bits (332), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 120/449 (26%), Positives = 197/449 (43%), Gaps = 77/449 (17%)
Query: 64 NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA 123
N VIS Y + +A ++F+ M RN+V+W M+SG+ +G AIE + RM +
Sbjct: 44 NNVISMYVDFRLLSDAHKVFDEMSERNIVTWTTMVSGYTSDGKPNKAIELYRRMLDSE-- 101
Query: 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD 183
+EAA + Y+ ++ G G ++ +++
Sbjct: 102 ---------------EEAANEFM---------------YSAVLKACGLVGDIQLGILVYE 131
Query: 184 KIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243
+I G+ N+R ++V NS++ Y K G ++ A F+++L + SWNT+ISGY
Sbjct: 132 RI------GKENLR--GDVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWNTLISGY 183
Query: 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303
M+EA LF +MP P+ ++WN ++SG+ G+ AL+F RM ++ LV +
Sbjct: 184 CKAGLMDEAVTLFHRMPQPNVVSWNCLISGFVDKGSPR-ALEFLVRMQREGLV-LDGFAL 241
Query: 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363
C G K +F +L+M G Q+H V K+ +
Sbjct: 242 PC-------------------GLKA--CSFGGLLTM---------GKQLHCCVVKSGLES 271
Query: 364 VPIN-NALITMYARCGAIVEARIIFEEMKLLKN--VVSWNAMIGGCASHGFATEALELFK 420
P +ALI MY+ CG+++ A +F + KL N V WN+M+ G + AL L
Sbjct: 272 SPFAISALIDMYSNCGSLIYAADVFHQEKLAVNSSVAVWNSMLSGFLINEENEAALWLLL 331
Query: 421 SMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH 480
+ + T L C + + G Q S+V G E + LVD+
Sbjct: 332 QIYQSDLCFDSYTLSGALKICINYVNLRLGLQ-VHSLVVVSGYELDYIVGSILVDLHANV 390
Query: 481 GRLEDAMDLIKGMPFEPDKAVWGALLGAC 509
G ++DA L +P D + L+ C
Sbjct: 391 GNIQDAHKLFHRLP-NKDIIAFSGLIRGC 418
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 140/312 (44%), Gaps = 14/312 (4%)
Query: 214 KAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273
K G+ + A + +Q + ++ F N +IS Y+ + +A +F +M + +TW MVSG
Sbjct: 22 KRGESIQAH-VIKQGISQNVFIANNVISMYVDFRLLSDAHKVFDEMSERNIVTWTTMVSG 80
Query: 274 YAQIGNLELALDFFKRM-----PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328
Y G A++ ++RM N +++++ C D + I ++ ++ E +
Sbjct: 81 YTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDIQLGILVYERIGKENLRG 140
Query: 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFE 388
D +S++ M L ++ + + + P N LI+ Y + G + EA +F
Sbjct: 141 DVVLMNSVVDMYVKNGRL---IEANSSFKEILRPSSTSWNTLISGYCKAGLMDEAVTLFH 197
Query: 389 EMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448
M NVVSWN +I G G + ALE M+ ++ L AC+ GL+
Sbjct: 198 RMP-QPNVVSWNCLISGFVDKG-SPRALEFLVRMQREGLVLDGFALPCGLKACSFGGLLT 255
Query: 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI--KGMPFEPDKAVWGALL 506
G+Q V + G+E ++L+D+ G L A D+ + + AVW ++L
Sbjct: 256 MGKQ-LHCCVVKSGLESSPFAISALIDMYSNCGSLIYAADVFHQEKLAVNSSVAVWNSML 314
Query: 507 GACRVHNNVELA 518
++ E A
Sbjct: 315 SGFLINEENEAA 326
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 142/375 (37%), Positives = 229/375 (61%), Gaps = 8/375 (2%)
Query: 206 NSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL 265
N++I+ +A GD+ A E+F+ + +W++M SGY ++EA LF +MP+ D +
Sbjct: 151 NALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQV 210
Query: 266 TWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325
WN M++G + ++ A + F R +K++V+WN+MI+G + A+ +F +M+ G
Sbjct: 211 AWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAG 270
Query: 326 EKPDRHTFSSILSMSSGIVDLHLGMQIH------QMVTKTVIPDVPINNALITMYARCGA 379
E PD T S+LS + + DL G ++H V+ ++ PI NALI MYA+CG+
Sbjct: 271 EHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGS 330
Query: 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439
I A +F +K +++ +WN +I G A H A ++E+F+ M+ KV P +TFI V+
Sbjct: 331 IDRAIEVFRGVKD-RDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVIL 388
Query: 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499
AC+H+G V+EGR++F M + Y IEP I+H+ +VD++GR G+LE+A ++ M EP+
Sbjct: 389 ACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNA 448
Query: 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559
VW LLGAC+++ NVEL + A E L+ + + S YVLL N+YA G+WD +VR +
Sbjct: 449 IVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMF 508
Query: 560 KSNNIKKPTGYSWVD 574
+KKPTG S ++
Sbjct: 509 DDTRVKKPTGVSLIE 523
Score = 122 bits (306), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 108/454 (23%), Positives = 201/454 (44%), Gaps = 84/454 (18%)
Query: 14 ARKLFDEMPQRDVVSWNVMISGYISS---------------RGSGFLEEARYLFD-IMPE 57
A KLFDE+P+ DV N ++ G S RG + RY F ++
Sbjct: 65 AHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRG---VSPDRYTFTFVLKA 121
Query: 58 RDCVTW-----------------------NTVISGYAKTGEMEEALRLFNSMPARNVVSW 94
+ W N +I +A G++ A LF+ + V+W
Sbjct: 122 CSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAW 181
Query: 95 NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154
++M SG+ + G + A+ FD MP +D + + +++G ++ E+D A + + +
Sbjct: 182 SSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEK--- 238
Query: 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214
D+V +N +I GY G +EA +F ++ D GE ++V+ S++ A
Sbjct: 239 --DVV-TWNAMISGYVNCGYPKEALGIFKEMR---DAGE-----HPDVVTILSLLSACAV 287
Query: 215 AGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGY 274
GD+ + + + +LE + S S+++V P WNA++ Y
Sbjct: 288 LGDLETGKRLHIYILETASVS-----------------SSIYVGTP-----IWNALIDMY 325
Query: 275 AQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS 334
A+ G+++ A++ F+ + ++L +WN++I G + EG+I++F +MQ P+ TF
Sbjct: 326 AKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHH-AEGSIEMFEEMQRLKVWPNEVTFI 384
Query: 335 SILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARIIFEEMKL 392
++ S + G + ++ + P++ ++ M R G + EA + E MK+
Sbjct: 385 GVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKI 444
Query: 393 LKNVVSWNAMIGGCASHG---FATEALELFKSMR 423
N + W ++G C +G A E SMR
Sbjct: 445 EPNAIVWRTLLGACKIYGNVELGKYANEKLLSMR 478
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 143/303 (47%), Gaps = 39/303 (12%)
Query: 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC 60
M SGY KR ++ +A +LFDEMP +D V+WNVMI+G + + ++ AR LFD E+D
Sbjct: 184 MTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKE---MDSARELFDRFTEKDV 240
Query: 61 VTWNTVISGYAKTGEMEEALRLFNSM----PARNVVSWNAMISGFLQNGDVANAIEFFDR 116
VTWN +ISGY G +EAL +F M +VV+ +++S GD+
Sbjct: 241 VTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIY 300
Query: 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR--------AYNTLIVG 168
+ S S S V I N +D A KCGS D ++ R +NTLIVG
Sbjct: 301 ILETASVSSSIYVGTPIWNALIDMYA----KCGS-IDRAIEVFRGVKDRDLSTWNTLIVG 355
Query: 169 YGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228
E + ++F+++ ++ N V++ +I+ + +G V R+ F M
Sbjct: 356 LALH-HAEGSIEMFEEMQ--------RLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLM 406
Query: 229 LERDTFSWNTMISGYIHVLDM-------EEASNLFVKMP-HPDTLTWNAMVSGYAQIGNL 280
RD ++ I Y ++DM EEA M P+ + W ++ GN+
Sbjct: 407 --RDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNV 464
Query: 281 ELA 283
EL
Sbjct: 465 ELG 467
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 149/320 (46%), Gaps = 33/320 (10%)
Query: 10 EMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISG 69
++ A +LFD+ + V+W+ M SGY + RG ++EA LFD MP +D V WN +I+G
Sbjct: 162 DLGIASELFDDSAKAHKVAWSSMTSGY-AKRGK--IDEAMRLFDEMPYKDQVAWNVMITG 218
Query: 70 YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASL 125
K EM+ A LF+ ++VV+WNAMISG++ G A+ F M D ++
Sbjct: 219 CLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTI 278
Query: 126 SALVSGLIQNGELDEAARV---LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLF 182
+L+S G+L+ R+ +++ S +N LI Y + G ++ A ++F
Sbjct: 279 LSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVF 338
Query: 183 DKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISG 242
RG + R++ +WN++I+ A + E+FE+M + G
Sbjct: 339 --------RGVKD----RDLSTWNTLIVGLA-LHHAEGSIEMFEEMQRLKVWPNEVTFIG 385
Query: 243 YI----HVLDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLELALDFFKRMP-Q 292
I H ++E F M P+ + MV + G LE A F + M +
Sbjct: 386 VILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIE 445
Query: 293 KNLVSWNSMIAGCETNKDYE 312
N + W +++ C+ + E
Sbjct: 446 PNAIVWRTLLGACKIYGNVE 465
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 145/350 (41%), Gaps = 69/350 (19%)
Query: 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337
G L+ A F +P+ ++ N ++ G + E + L+ +M+ G PDR+TF+ +L
Sbjct: 60 GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVL 119
Query: 338 SMSSGIVDLHLGMQIH-QMVTKTVIPDVPINNALITMYARC------------------- 377
S + G H ++V + + + NALI +A C
Sbjct: 120 KACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKV 179
Query: 378 ------------GAIVEARIIFEEMKLLKNV----------------------------- 396
G I EA +F+EM V
Sbjct: 180 AWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKD 239
Query: 397 -VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455
V+WNAMI G + G+ EAL +FK MR P +T +S+LSACA G +E G++
Sbjct: 240 VVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHI 299
Query: 456 SMVNEYGIEPRI----EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV 511
++ + I + +L+D+ + G ++ A+++ +G+ + D + W L+ +
Sbjct: 300 YILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVK-DRDLSTWNTLIVGLAL 358
Query: 512 HNNVELAQVAAE-ALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560
H+ ++ E +KV P N ++ + + GR D+ + LM+
Sbjct: 359 HHAEGSIEMFEEMQRLKVWP-NEVTFIGVILACSHSGRVDEGRKYFSLMR 407
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,489,708
Number of Sequences: 539616
Number of extensions: 8826529
Number of successful extensions: 33053
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 19134
Number of HSP's gapped (non-prelim): 2792
length of query: 579
length of database: 191,569,459
effective HSP length: 123
effective length of query: 456
effective length of database: 125,196,691
effective search space: 57089691096
effective search space used: 57089691096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)