Query 036340
Match_columns 579
No_of_seqs 632 out of 3295
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 11:41:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.3E-78 4.9E-83 632.8 55.5 560 1-576 127-734 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 6.1E-68 1.3E-72 554.3 54.5 546 1-569 57-626 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.9E-65 4.1E-70 522.9 50.7 473 89-576 85-571 (697)
4 PLN03218 maturation of RBCL 1; 100.0 1E-61 2.2E-66 496.6 51.9 500 57-569 367-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.5E-60 7.5E-65 485.4 51.7 501 13-529 355-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.4E-57 3E-62 465.1 43.5 445 2-466 94-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.3E-37 4.9E-42 333.3 51.6 541 3-564 303-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.4E-37 7.3E-42 331.9 51.1 539 2-560 336-898 (899)
9 PRK11447 cellulose synthase su 100.0 1.6E-28 3.5E-33 263.8 51.7 536 2-560 69-738 (1157)
10 PRK11447 cellulose synthase su 100.0 8.4E-29 1.8E-33 265.9 45.9 544 3-565 36-703 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 4.3E-25 9.3E-30 226.3 50.6 529 5-564 54-708 (987)
12 KOG4626 O-linked N-acetylgluco 100.0 3.6E-26 7.7E-31 208.1 30.8 376 159-551 116-508 (966)
13 PRK09782 bacteriophage N4 rece 100.0 3E-23 6.5E-28 212.9 48.8 543 1-567 84-745 (987)
14 KOG2002 TPR-containing nuclear 99.9 2.7E-24 5.8E-29 206.1 35.3 542 4-565 173-801 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 2E-24 4.4E-29 196.8 26.7 422 125-565 51-488 (966)
16 KOG2002 TPR-containing nuclear 99.9 4.6E-23 1E-27 197.7 31.5 539 11-565 146-748 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 5.7E-22 1.2E-26 200.4 35.2 419 125-562 130-571 (615)
18 PRK11788 tetratricopeptide rep 99.9 1.6E-21 3.4E-26 187.8 24.8 297 274-579 45-361 (389)
19 TIGR00990 3a0801s09 mitochondr 99.9 4.8E-20 1E-24 186.5 33.7 419 93-532 129-575 (615)
20 PRK10049 pgaA outer membrane p 99.9 3.4E-19 7.4E-24 183.5 39.7 393 126-564 19-458 (765)
21 PRK15174 Vi polysaccharide exp 99.9 2.6E-19 5.7E-24 180.3 34.2 341 102-458 16-379 (656)
22 PRK14574 hmsH outer membrane p 99.9 3E-18 6.4E-23 172.8 40.1 436 67-534 41-519 (822)
23 PRK15174 Vi polysaccharide exp 99.9 3.8E-19 8.3E-24 179.1 33.6 324 161-533 44-386 (656)
24 PRK10049 pgaA outer membrane p 99.9 5.8E-18 1.3E-22 174.4 39.4 138 45-186 31-177 (765)
25 PRK11788 tetratricopeptide rep 99.9 2.1E-19 4.5E-24 173.0 27.0 292 129-468 42-354 (389)
26 PRK14574 hmsH outer membrane p 99.9 1.7E-17 3.6E-22 167.4 39.3 434 35-507 43-525 (822)
27 KOG0495 HAT repeat protein [RN 99.8 1E-15 2.3E-20 141.4 38.9 485 69-575 385-891 (913)
28 KOG2076 RNA polymerase III tra 99.8 5.8E-16 1.2E-20 148.7 37.0 546 5-558 149-891 (895)
29 KOG2003 TPR repeat-containing 99.8 1.7E-17 3.7E-22 146.5 23.2 465 63-548 204-709 (840)
30 KOG2076 RNA polymerase III tra 99.8 1.4E-14 3E-19 139.4 38.7 509 45-563 155-770 (895)
31 KOG0495 HAT repeat protein [RN 99.8 1.8E-14 3.8E-19 133.5 37.7 415 130-565 384-849 (913)
32 KOG2003 TPR repeat-containing 99.8 2.4E-17 5.2E-22 145.6 17.1 443 125-578 204-704 (840)
33 KOG0547 Translocase of outer m 99.7 4.5E-15 9.7E-20 132.7 28.5 215 341-560 337-564 (606)
34 KOG1915 Cell cycle control pro 99.7 5.9E-14 1.3E-18 125.1 34.8 419 103-541 85-548 (677)
35 KOG1915 Cell cycle control pro 99.7 2.5E-13 5.5E-18 121.2 33.8 449 62-527 75-584 (677)
36 KOG1126 DNA-binding cell divis 99.7 1.4E-15 3.1E-20 141.4 18.4 281 278-567 333-625 (638)
37 PF13429 TPR_15: Tetratricopep 99.7 7.3E-17 1.6E-21 146.7 7.4 253 269-560 13-275 (280)
38 KOG0547 Translocase of outer m 99.7 4.9E-13 1.1E-17 119.9 30.7 414 96-531 120-569 (606)
39 KOG1173 Anaphase-promoting com 99.7 6.5E-13 1.4E-17 121.4 31.9 349 209-563 148-519 (611)
40 KOG1155 Anaphase-promoting com 99.7 1.4E-12 3E-17 116.3 32.6 352 89-492 162-532 (559)
41 KOG1155 Anaphase-promoting com 99.7 6.2E-13 1.3E-17 118.5 29.5 252 303-561 235-494 (559)
42 KOG4422 Uncharacterized conser 99.6 2.4E-12 5.2E-17 113.6 31.2 351 113-493 198-587 (625)
43 KOG1173 Anaphase-promoting com 99.6 1.9E-12 4.1E-17 118.5 31.5 486 26-543 16-533 (611)
44 KOG4422 Uncharacterized conser 99.6 5.2E-12 1.1E-16 111.6 31.0 348 82-458 198-588 (625)
45 PRK10747 putative protoheme IX 99.6 2.9E-13 6.3E-18 128.8 25.2 276 277-561 97-389 (398)
46 COG2956 Predicted N-acetylgluc 99.6 5.9E-13 1.3E-17 113.1 23.8 263 214-509 47-325 (389)
47 PRK10747 putative protoheme IX 99.6 5.8E-13 1.3E-17 126.7 26.9 283 214-529 96-391 (398)
48 KOG1126 DNA-binding cell divis 99.6 2.7E-14 5.9E-19 133.1 17.1 247 309-563 333-587 (638)
49 KOG2376 Signal recognition par 99.6 1.9E-11 4E-16 112.7 32.3 433 99-558 20-516 (652)
50 KOG3785 Uncharacterized conser 99.6 8.3E-11 1.8E-15 101.5 32.8 73 45-117 38-117 (557)
51 PF13429 TPR_15: Tetratricopep 99.6 2.2E-14 4.7E-19 130.5 11.3 248 207-457 13-274 (280)
52 TIGR00540 hemY_coli hemY prote 99.6 2.5E-12 5.4E-17 123.2 25.2 278 277-560 97-397 (409)
53 KOG2047 mRNA splicing factor [ 99.5 2.3E-10 5E-15 106.6 36.2 510 26-555 102-716 (835)
54 TIGR00540 hemY_coli hemY prote 99.5 2.7E-11 5.8E-16 116.1 28.0 145 280-458 245-397 (409)
55 KOG2047 mRNA splicing factor [ 99.5 7.7E-10 1.7E-14 103.2 35.4 508 3-522 110-717 (835)
56 KOG3617 WD40 and TPR repeat-co 99.5 2.4E-09 5.3E-14 102.6 38.2 453 45-564 816-1361(1416)
57 KOG3785 Uncharacterized conser 99.5 2.5E-10 5.3E-15 98.7 28.8 463 67-569 29-521 (557)
58 COG2956 Predicted N-acetylgluc 99.5 5.7E-11 1.2E-15 101.3 24.3 282 135-460 48-347 (389)
59 COG3071 HemY Uncharacterized e 99.5 7E-11 1.5E-15 104.0 25.3 274 135-423 97-388 (400)
60 TIGR02521 type_IV_pilW type IV 99.5 8.3E-12 1.8E-16 111.2 18.9 199 363-562 30-232 (234)
61 KOG1129 TPR repeat-containing 99.4 8.3E-12 1.8E-16 106.3 16.8 238 299-540 227-470 (478)
62 KOG3617 WD40 and TPR repeat-co 99.4 2.6E-09 5.6E-14 102.5 35.1 396 4-457 737-1171(1416)
63 KOG1174 Anaphase-promoting com 99.4 8.4E-10 1.8E-14 97.4 29.5 274 261-539 229-511 (564)
64 KOG4318 Bicoid mRNA stability 99.4 3.4E-10 7.3E-15 109.4 28.3 425 120-566 202-812 (1088)
65 KOG4162 Predicted calmodulin-b 99.4 1.1E-09 2.4E-14 104.5 31.2 416 120-563 321-784 (799)
66 COG3071 HemY Uncharacterized e 99.4 3.4E-10 7.4E-15 99.8 25.6 275 278-560 98-388 (400)
67 KOG4162 Predicted calmodulin-b 99.4 3.1E-10 6.7E-15 108.2 26.4 426 88-534 320-789 (799)
68 KOG1156 N-terminal acetyltrans 99.4 3.5E-09 7.6E-14 99.1 32.6 123 433-558 373-507 (700)
69 KOG3616 Selective LIM binding 99.4 3.2E-08 6.9E-13 94.1 38.0 74 476-557 1056-1129(1636)
70 KOG1127 TPR repeat-containing 99.4 6.7E-10 1.4E-14 108.7 26.5 542 9-561 472-1103(1238)
71 KOG2376 Signal recognition par 99.4 2.5E-09 5.4E-14 99.0 28.2 417 127-565 17-490 (652)
72 KOG3616 Selective LIM binding 99.3 9.6E-09 2.1E-13 97.6 32.2 308 207-555 620-930 (1636)
73 COG3063 PilF Tfp pilus assembl 99.3 4E-11 8.7E-16 97.5 13.3 161 399-564 38-204 (250)
74 KOG1174 Anaphase-promoting com 99.3 1.6E-08 3.5E-13 89.5 30.1 267 293-566 230-504 (564)
75 PRK12370 invasion protein regu 99.3 3.8E-10 8.3E-15 112.5 22.1 242 310-563 276-536 (553)
76 PRK12370 invasion protein regu 99.3 1.6E-10 3.5E-15 115.2 19.2 236 74-325 275-536 (553)
77 TIGR02521 type_IV_pilW type IV 99.3 5.5E-10 1.2E-14 99.4 20.3 199 295-530 31-234 (234)
78 KOG4318 Bicoid mRNA stability 99.3 1.2E-08 2.6E-13 99.0 29.4 463 57-566 22-598 (1088)
79 PRK11189 lipoprotein NlpI; Pro 99.3 1.9E-10 4.2E-15 104.7 16.4 116 308-423 39-159 (296)
80 KOG0548 Molecular co-chaperone 99.3 1.8E-08 4E-13 92.5 27.6 247 298-557 227-484 (539)
81 KOG1840 Kinesin light chain [C 99.2 4.8E-10 1E-14 106.2 18.1 193 368-560 245-477 (508)
82 PF12569 NARP1: NMDA receptor- 99.2 1.5E-08 3.3E-13 97.5 28.0 46 513-558 471-516 (517)
83 KOG0624 dsRNA-activated protei 99.2 1.1E-08 2.5E-13 88.2 23.6 315 200-536 36-378 (504)
84 KOG4340 Uncharacterized conser 99.2 7E-09 1.5E-13 87.8 21.4 408 125-561 13-442 (459)
85 KOG1156 N-terminal acetyltrans 99.2 1.7E-08 3.7E-13 94.7 25.6 386 162-564 11-470 (700)
86 KOG1125 TPR repeat-containing 99.2 3.9E-10 8.5E-15 104.1 14.8 214 342-560 297-525 (579)
87 KOG0985 Vesicle coat protein c 99.2 2.9E-07 6.2E-12 90.9 34.3 510 2-559 613-1246(1666)
88 KOG1129 TPR repeat-containing 99.2 5.8E-10 1.2E-14 95.4 14.3 222 268-493 227-455 (478)
89 PF13041 PPR_2: PPR repeat fam 99.2 4.5E-11 9.7E-16 75.5 5.8 50 394-443 1-50 (50)
90 KOG1840 Kinesin light chain [C 99.2 6.6E-10 1.4E-14 105.3 15.0 197 124-321 201-435 (508)
91 KOG1127 TPR repeat-containing 99.2 3.6E-08 7.8E-13 97.0 26.4 496 45-560 474-1065(1238)
92 COG3063 PilF Tfp pilus assembl 99.1 1.5E-08 3.1E-13 82.9 19.3 168 363-533 68-241 (250)
93 PRK11189 lipoprotein NlpI; Pro 99.1 8.7E-09 1.9E-13 93.9 20.5 195 364-567 64-270 (296)
94 PF13041 PPR_2: PPR repeat fam 99.1 1.5E-10 3.3E-15 73.1 6.0 50 293-342 1-50 (50)
95 KOG0548 Molecular co-chaperone 99.1 1.8E-08 3.9E-13 92.6 21.2 423 98-564 9-457 (539)
96 PF12569 NARP1: NMDA receptor- 99.1 2.9E-08 6.2E-13 95.6 23.6 124 433-559 196-331 (517)
97 KOG4340 Uncharacterized conser 99.1 7.8E-08 1.7E-12 81.6 23.0 313 3-321 18-372 (459)
98 KOG0624 dsRNA-activated protei 99.1 1E-07 2.2E-12 82.5 22.4 293 128-458 44-368 (504)
99 KOG0985 Vesicle coat protein c 99.1 2.7E-06 5.8E-11 84.4 33.8 321 121-493 983-1305(1666)
100 cd05804 StaR_like StaR_like; a 99.0 2.2E-07 4.8E-12 88.4 26.5 298 265-563 7-337 (355)
101 PF04733 Coatomer_E: Coatomer 99.0 2.8E-08 6E-13 89.1 17.3 240 2-260 8-263 (290)
102 PF04733 Coatomer_E: Coatomer 99.0 8.2E-08 1.8E-12 86.1 19.5 246 167-458 9-263 (290)
103 PRK10370 formate-dependent nit 99.0 2.3E-08 5E-13 84.5 14.2 150 404-567 24-178 (198)
104 cd05804 StaR_like StaR_like; a 98.9 1.3E-06 2.8E-11 83.1 27.2 190 93-322 8-213 (355)
105 TIGR03302 OM_YfiO outer membra 98.9 5E-08 1.1E-12 86.5 14.1 183 361-563 30-233 (235)
106 PRK15359 type III secretion sy 98.8 2.3E-08 5.1E-13 79.9 9.6 102 437-541 30-134 (144)
107 KOG1070 rRNA processing protei 98.8 1.6E-07 3.4E-12 95.9 16.9 210 356-569 1450-1670(1710)
108 KOG1125 TPR repeat-containing 98.8 1.8E-07 3.9E-12 87.0 15.4 246 305-555 295-564 (579)
109 COG5010 TadD Flp pilus assembl 98.8 2.5E-07 5.5E-12 77.6 14.5 156 400-558 70-227 (257)
110 PRK04841 transcriptional regul 98.8 1E-05 2.2E-10 87.5 31.1 355 209-563 348-761 (903)
111 PRK15359 type III secretion sy 98.8 6.7E-08 1.5E-12 77.2 10.0 109 452-565 14-124 (144)
112 PRK04841 transcriptional regul 98.8 8.2E-06 1.8E-10 88.2 29.2 356 100-460 350-760 (903)
113 KOG1128 Uncharacterized conser 98.7 3.7E-07 8E-12 87.3 15.6 196 360-563 394-617 (777)
114 KOG1914 mRNA cleavage and poly 98.7 0.00014 3E-09 67.8 31.1 429 58-490 18-533 (656)
115 PRK15179 Vi polysaccharide bio 98.7 9.8E-07 2.1E-11 88.7 17.5 132 395-531 85-220 (694)
116 KOG1128 Uncharacterized conser 98.7 8.4E-07 1.8E-11 84.9 15.5 224 299-541 402-631 (777)
117 KOG2053 Mitochondrial inherita 98.7 0.00039 8.4E-09 69.0 33.3 520 6-560 20-606 (932)
118 PLN02789 farnesyltranstransfer 98.7 4E-06 8.6E-11 76.4 18.9 191 366-560 73-300 (320)
119 COG5010 TadD Flp pilus assembl 98.6 1.2E-06 2.6E-11 73.6 14.1 136 427-564 62-199 (257)
120 TIGR03302 OM_YfiO outer membra 98.6 2.1E-06 4.6E-11 76.0 16.8 183 328-531 31-235 (235)
121 PRK10370 formate-dependent nit 98.6 2E-06 4.4E-11 72.8 15.5 152 370-534 22-179 (198)
122 PRK15363 pathogenicity island 98.6 1.9E-07 4.2E-12 72.9 8.1 98 466-563 34-133 (157)
123 TIGR02552 LcrH_SycD type III s 98.6 3.7E-07 8E-12 72.9 9.2 92 471-562 21-114 (135)
124 PLN02789 farnesyltranstransfer 98.6 1.8E-06 3.8E-11 78.7 14.2 190 370-564 43-252 (320)
125 KOG3081 Vesicle coat complex C 98.6 1.5E-05 3.3E-10 67.1 18.0 135 99-249 116-257 (299)
126 PRK14720 transcript cleavage f 98.5 1.1E-05 2.3E-10 82.2 20.3 240 262-551 29-273 (906)
127 COG4783 Putative Zn-dependent 98.5 1.6E-05 3.5E-10 73.1 19.2 138 404-563 314-455 (484)
128 KOG1070 rRNA processing protei 98.5 1.5E-05 3.3E-10 82.0 19.8 216 232-448 1457-1688(1710)
129 KOG3081 Vesicle coat complex C 98.5 3.8E-05 8.3E-10 64.8 18.8 86 373-459 146-235 (299)
130 KOG3060 Uncharacterized conser 98.5 4.7E-06 1E-10 69.5 13.3 196 343-541 25-233 (289)
131 KOG1914 mRNA cleavage and poly 98.5 0.00079 1.7E-08 63.0 28.7 147 380-530 347-503 (656)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.4E-06 3.1E-11 80.7 11.1 122 434-560 172-295 (395)
133 KOG3060 Uncharacterized conser 98.5 1.3E-05 2.8E-10 66.9 15.2 182 308-493 25-217 (289)
134 PF12854 PPR_1: PPR repeat 98.4 4.6E-07 1E-11 51.0 4.4 33 197-229 2-34 (34)
135 PRK14720 transcript cleavage f 98.4 5.2E-05 1.1E-09 77.4 20.8 232 121-407 30-268 (906)
136 COG4783 Putative Zn-dependent 98.4 3.9E-05 8.5E-10 70.6 18.0 108 202-323 340-453 (484)
137 PF12854 PPR_1: PPR repeat 98.4 4.9E-07 1.1E-11 50.9 3.6 32 426-457 2-33 (34)
138 TIGR02552 LcrH_SycD type III s 98.4 5.1E-06 1.1E-10 66.3 10.8 113 418-534 5-120 (135)
139 PRK15179 Vi polysaccharide bio 98.3 3.9E-05 8.6E-10 77.4 18.8 147 356-506 78-229 (694)
140 COG4235 Cytochrome c biogenesi 98.3 3.1E-06 6.8E-11 73.2 8.8 111 464-574 153-268 (287)
141 PF07079 DUF1347: Protein of u 98.3 0.0033 7.1E-08 57.8 27.4 139 71-214 17-179 (549)
142 KOG2041 WD40 repeat protein [G 98.3 0.0038 8.2E-08 60.4 28.4 221 45-296 679-910 (1189)
143 PF09976 TPR_21: Tetratricopep 98.2 3.1E-05 6.8E-10 62.2 12.7 115 135-257 24-142 (145)
144 PF09976 TPR_21: Tetratricopep 98.2 4.7E-05 1E-09 61.2 13.7 115 408-525 23-144 (145)
145 TIGR02795 tol_pal_ybgF tol-pal 98.2 7.1E-06 1.5E-10 63.8 8.5 60 503-562 43-105 (119)
146 PF13414 TPR_11: TPR repeat; P 98.2 1E-06 2.2E-11 60.4 3.0 66 498-563 2-68 (69)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.7E-05 5.9E-10 72.4 12.7 120 96-228 174-294 (395)
148 KOG0553 TPR repeat-containing 98.2 5.6E-06 1.2E-10 71.1 7.4 94 443-539 93-189 (304)
149 cd00189 TPR Tetratricopeptide 98.2 8.8E-06 1.9E-10 60.4 7.7 94 470-563 3-98 (100)
150 COG3898 Uncharacterized membra 98.1 0.0053 1.2E-07 55.2 25.0 273 276-561 96-391 (531)
151 PF13432 TPR_16: Tetratricopep 98.1 1.9E-06 4.1E-11 58.2 3.0 59 505-563 3-61 (65)
152 PF12895 Apc3: Anaphase-promot 98.1 7.9E-07 1.7E-11 63.7 1.2 81 444-524 2-83 (84)
153 TIGR02795 tol_pal_ybgF tol-pal 98.1 2.8E-05 6.1E-10 60.4 9.6 103 433-535 4-112 (119)
154 KOG2053 Mitochondrial inherita 98.1 0.017 3.7E-07 58.0 38.0 179 133-325 54-256 (932)
155 KOG0553 TPR repeat-containing 98.1 6.4E-06 1.4E-10 70.8 5.3 90 476-565 90-181 (304)
156 PLN03088 SGT1, suppressor of 98.0 9.7E-06 2.1E-10 75.8 6.6 103 437-542 8-113 (356)
157 COG4700 Uncharacterized protei 98.0 0.00034 7.4E-09 55.7 13.3 129 428-558 86-218 (251)
158 PF12895 Apc3: Anaphase-promot 98.0 1.3E-05 2.7E-10 57.4 5.0 80 409-492 2-83 (84)
159 TIGR00756 PPR pentatricopeptid 98.0 1.5E-05 3.2E-10 45.8 4.4 33 398-430 2-34 (35)
160 KOG0550 Molecular chaperone (D 98.0 0.00012 2.5E-09 65.9 11.7 152 405-562 178-350 (486)
161 TIGR00756 PPR pentatricopeptid 98.0 1.4E-05 3.1E-10 45.8 4.2 35 296-330 1-35 (35)
162 PF13812 PPR_3: Pentatricopept 98.0 1.7E-05 3.7E-10 45.1 4.2 33 296-328 2-34 (34)
163 PRK02603 photosystem I assembl 97.9 3.4E-05 7.3E-10 64.2 7.5 94 470-563 38-150 (172)
164 PRK15363 pathogenicity island 97.9 9.6E-05 2.1E-09 58.0 9.1 99 119-229 32-130 (157)
165 PF13371 TPR_9: Tetratricopept 97.9 2.3E-05 5E-10 54.4 5.2 59 507-565 3-61 (73)
166 PF13432 TPR_16: Tetratricopep 97.9 2.2E-05 4.7E-10 52.9 4.8 61 473-533 3-65 (65)
167 PF13812 PPR_3: Pentatricopept 97.9 2.1E-05 4.6E-10 44.7 4.0 33 397-429 2-34 (34)
168 PRK15331 chaperone protein Sic 97.9 8E-05 1.7E-09 58.8 8.3 91 471-561 41-133 (165)
169 PLN03088 SGT1, suppressor of 97.9 6.9E-05 1.5E-09 70.2 9.5 101 401-506 7-110 (356)
170 KOG0550 Molecular chaperone (D 97.9 0.002 4.4E-08 58.3 17.7 279 128-460 55-350 (486)
171 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.02 4.4E-07 52.7 29.2 84 50-133 30-120 (660)
172 PRK02603 photosystem I assembl 97.9 0.0002 4.3E-09 59.6 11.1 127 397-547 36-165 (172)
173 CHL00033 ycf3 photosystem I as 97.9 4.4E-05 9.4E-10 63.3 7.0 92 467-558 35-138 (168)
174 PF14559 TPR_19: Tetratricopep 97.9 5.7E-06 1.2E-10 56.5 1.3 55 510-564 2-56 (68)
175 PRK10153 DNA-binding transcrip 97.8 0.00023 5E-09 69.7 12.6 140 393-534 334-488 (517)
176 COG3898 Uncharacterized membra 97.8 0.024 5.2E-07 51.3 24.0 271 73-355 97-388 (531)
177 KOG2041 WD40 repeat protein [G 97.8 0.041 8.8E-07 53.7 28.1 216 75-321 678-904 (1189)
178 PF07079 DUF1347: Protein of u 97.8 0.03 6.5E-07 51.8 27.4 70 489-559 446-521 (549)
179 cd00189 TPR Tetratricopeptide 97.8 0.00017 3.6E-09 53.3 8.6 91 438-530 7-99 (100)
180 KOG1130 Predicted G-alpha GTPa 97.8 1.4E-05 3.1E-10 71.4 2.6 280 130-423 25-342 (639)
181 PF14938 SNAP: Soluble NSF att 97.8 0.0015 3.3E-08 59.3 15.7 154 98-265 101-269 (282)
182 KOG1130 Predicted G-alpha GTPa 97.7 0.00011 2.4E-09 66.0 7.1 128 433-560 197-342 (639)
183 COG4700 Uncharacterized protei 97.7 0.0055 1.2E-07 49.1 15.6 134 392-526 85-220 (251)
184 PF12688 TPR_5: Tetratrico pep 97.7 0.00068 1.5E-08 51.4 10.5 110 125-243 4-116 (120)
185 KOG1258 mRNA processing protei 97.7 0.022 4.8E-07 54.7 22.2 180 365-547 298-489 (577)
186 CHL00033 ycf3 photosystem I as 97.7 0.00065 1.4E-08 56.3 11.1 94 123-225 36-136 (168)
187 PRK10866 outer membrane biogen 97.7 0.0019 4E-08 56.8 14.1 79 90-168 31-115 (243)
188 PF05843 Suf: Suppressor of fo 97.6 0.00074 1.6E-08 61.0 11.6 133 398-533 3-141 (280)
189 PF13414 TPR_11: TPR repeat; P 97.6 5.9E-05 1.3E-09 51.5 3.3 64 467-530 3-69 (69)
190 PRK10866 outer membrane biogen 97.6 0.0048 1E-07 54.3 15.9 173 369-560 37-239 (243)
191 PRK10153 DNA-binding transcrip 97.6 0.00065 1.4E-08 66.6 11.5 137 426-566 332-486 (517)
192 KOG2280 Vacuolar assembly/sort 97.6 0.097 2.1E-06 51.7 27.4 358 167-555 397-792 (829)
193 PF01535 PPR: PPR repeat; Int 97.5 0.00013 2.7E-09 40.3 3.5 29 398-426 2-30 (31)
194 PF13431 TPR_17: Tetratricopep 97.5 2.4E-05 5.2E-10 44.0 0.4 33 522-554 2-34 (34)
195 KOG2796 Uncharacterized conser 97.5 0.0058 1.3E-07 51.9 14.3 57 402-458 183-239 (366)
196 PF01535 PPR: PPR repeat; Int 97.5 0.00013 2.8E-09 40.3 3.4 31 296-326 1-31 (31)
197 PF13281 DUF4071: Domain of un 97.5 0.0068 1.5E-07 55.8 16.1 167 363-532 140-338 (374)
198 PRK10803 tol-pal system protei 97.5 0.00034 7.4E-09 61.8 7.6 100 433-532 145-250 (263)
199 PF04840 Vps16_C: Vps16, C-ter 97.5 0.073 1.6E-06 48.8 24.8 25 204-228 2-26 (319)
200 PF14938 SNAP: Soluble NSF att 97.5 0.0012 2.5E-08 60.0 11.2 166 368-535 39-232 (282)
201 PF14559 TPR_19: Tetratricopep 97.5 0.00032 7E-09 47.7 5.8 51 133-186 2-52 (68)
202 PRK10803 tol-pal system protei 97.5 0.0011 2.4E-08 58.6 10.4 85 478-562 154-246 (263)
203 PF13428 TPR_14: Tetratricopep 97.4 0.00015 3.2E-09 43.9 2.8 42 500-541 2-43 (44)
204 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00042 9.2E-09 64.3 6.8 62 467-528 75-141 (453)
205 KOG2280 Vacuolar assembly/sort 97.4 0.18 3.8E-06 50.1 25.5 342 144-523 417-794 (829)
206 PF10037 MRP-S27: Mitochondria 97.3 0.0033 7.2E-08 59.1 12.1 118 326-443 62-185 (429)
207 PF12688 TPR_5: Tetratrico pep 97.3 0.004 8.6E-08 47.3 10.3 56 300-355 6-63 (120)
208 PF05843 Suf: Suppressor of fo 97.3 0.00088 1.9E-08 60.5 8.0 129 432-562 2-136 (280)
209 PF13371 TPR_9: Tetratricopept 97.3 0.00034 7.4E-09 48.4 4.2 61 475-535 3-65 (73)
210 PF13525 YfiO: Outer membrane 97.2 0.0045 9.7E-08 53.0 10.9 64 123-186 6-69 (203)
211 KOG0543 FKBP-type peptidyl-pro 97.2 0.0021 4.6E-08 58.3 9.1 93 468-560 258-353 (397)
212 COG4235 Cytochrome c biogenesi 97.2 0.0098 2.1E-07 52.1 12.6 111 428-541 152-268 (287)
213 KOG1538 Uncharacterized conser 97.2 0.095 2.1E-06 50.8 19.8 85 433-527 749-845 (1081)
214 PF08579 RPM2: Mitochondrial r 97.2 0.0031 6.8E-08 46.0 7.6 78 401-479 30-116 (120)
215 PF10037 MRP-S27: Mitochondria 97.1 0.0065 1.4E-07 57.2 11.8 101 122-230 66-166 (429)
216 PF04840 Vps16_C: Vps16, C-ter 97.1 0.22 4.7E-06 45.8 26.8 102 208-317 183-284 (319)
217 PF13512 TPR_18: Tetratricopep 97.1 0.0059 1.3E-07 47.3 9.1 90 473-562 16-128 (142)
218 PRK11906 transcriptional regul 97.0 0.0054 1.2E-07 57.4 9.4 158 397-558 252-432 (458)
219 PF13525 YfiO: Outer membrane 97.0 0.013 2.9E-07 50.1 11.3 167 368-553 9-198 (203)
220 PF13424 TPR_12: Tetratricopep 96.9 0.00045 9.7E-09 48.5 1.8 61 500-560 6-73 (78)
221 KOG2796 Uncharacterized conser 96.9 0.013 2.9E-07 49.8 10.3 101 126-231 181-281 (366)
222 COG1729 Uncharacterized protei 96.9 0.0085 1.8E-07 51.8 9.2 92 442-533 152-249 (262)
223 KOG1538 Uncharacterized conser 96.9 0.16 3.5E-06 49.3 18.0 41 140-185 618-658 (1081)
224 KOG2066 Vacuolar assembly/sort 96.9 0.61 1.3E-05 46.7 25.0 147 165-322 362-532 (846)
225 PF13424 TPR_12: Tetratricopep 96.8 0.0013 2.8E-08 46.1 3.2 30 499-528 46-75 (78)
226 PF06239 ECSIT: Evolutionarily 96.7 0.036 7.7E-07 46.2 11.3 36 411-446 118-153 (228)
227 KOG1258 mRNA processing protei 96.7 0.68 1.5E-05 45.0 25.7 398 92-513 46-489 (577)
228 KOG0543 FKBP-type peptidyl-pro 96.6 0.0045 9.7E-08 56.3 6.1 68 499-566 257-324 (397)
229 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.62 1.3E-05 43.5 27.7 130 399-532 400-535 (660)
230 KOG2114 Vacuolar assembly/sort 96.5 1.1 2.4E-05 45.5 27.9 178 94-292 337-518 (933)
231 COG1729 Uncharacterized protei 96.5 0.026 5.7E-07 48.9 9.6 101 125-231 144-244 (262)
232 KOG2610 Uncharacterized conser 96.5 0.051 1.1E-06 48.2 11.1 113 409-524 116-234 (491)
233 COG3118 Thioredoxin domain-con 96.5 0.071 1.5E-06 46.7 11.8 121 440-563 143-266 (304)
234 PF13512 TPR_18: Tetratricopep 96.4 0.059 1.3E-06 41.9 10.2 114 403-533 17-133 (142)
235 PF13281 DUF4071: Domain of un 96.4 0.14 3.1E-06 47.4 14.2 74 95-170 145-228 (374)
236 COG0457 NrfG FOG: TPR repeat [ 96.4 0.64 1.4E-05 41.0 21.1 219 309-531 37-268 (291)
237 KOG4555 TPR repeat-containing 96.4 0.02 4.3E-07 42.9 6.9 87 477-563 53-145 (175)
238 PF09205 DUF1955: Domain of un 96.3 0.13 2.8E-06 38.9 10.6 141 406-565 12-152 (161)
239 COG4105 ComL DNA uptake lipopr 96.2 0.32 7E-06 42.0 14.5 64 123-186 35-98 (254)
240 PF07719 TPR_2: Tetratricopept 96.2 0.012 2.5E-07 33.1 4.3 33 500-532 2-34 (34)
241 PRK11906 transcriptional regul 96.2 0.13 2.8E-06 48.5 12.8 141 379-524 273-432 (458)
242 PF03704 BTAD: Bacterial trans 96.2 0.0097 2.1E-07 47.9 5.0 69 501-569 64-137 (146)
243 PF00515 TPR_1: Tetratricopept 96.1 0.0099 2.1E-07 33.4 3.6 33 500-532 2-34 (34)
244 COG3118 Thioredoxin domain-con 96.1 0.26 5.6E-06 43.4 13.3 157 13-173 121-286 (304)
245 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.024 5.2E-07 53.1 7.7 58 433-493 77-138 (453)
246 PF04053 Coatomer_WDAD: Coatom 96.1 0.53 1.1E-05 45.5 16.8 157 4-186 270-429 (443)
247 PF08579 RPM2: Mitochondrial r 96.1 0.092 2E-06 38.6 8.8 75 300-374 30-114 (120)
248 COG4105 ComL DNA uptake lipopr 96.0 0.39 8.5E-06 41.5 13.9 58 99-156 42-105 (254)
249 KOG1941 Acetylcholine receptor 96.0 0.061 1.3E-06 48.2 9.4 18 306-323 17-34 (518)
250 PF04053 Coatomer_WDAD: Coatom 96.0 0.2 4.4E-06 48.3 13.7 156 35-228 270-428 (443)
251 PRK15331 chaperone protein Sic 96.0 0.15 3.1E-06 40.8 10.5 84 406-493 47-131 (165)
252 PRK11619 lytic murein transgly 96.0 2.3 5E-05 43.6 28.8 306 211-526 42-373 (644)
253 KOG4234 TPR repeat-containing 95.8 0.016 3.4E-07 47.2 4.6 103 438-540 102-209 (271)
254 PF06239 ECSIT: Evolutionarily 95.8 0.089 1.9E-06 44.0 8.9 90 393-483 44-154 (228)
255 PF03704 BTAD: Bacterial trans 95.6 0.023 5E-07 45.7 5.1 77 124-206 64-140 (146)
256 COG0457 NrfG FOG: TPR repeat [ 95.6 1.4 3.1E-05 38.6 22.3 196 364-563 59-266 (291)
257 PF12921 ATP13: Mitochondrial 95.6 0.11 2.4E-06 40.0 8.4 50 426-475 47-96 (126)
258 KOG4555 TPR repeat-containing 95.6 0.035 7.5E-07 41.7 5.2 61 507-567 51-111 (175)
259 PF02259 FAT: FAT domain; Int 95.6 0.72 1.6E-05 43.8 15.9 150 395-546 145-305 (352)
260 PF13428 TPR_14: Tetratricopep 95.5 0.038 8.3E-07 33.3 4.5 41 123-166 2-42 (44)
261 PF10300 DUF3808: Protein of u 95.5 0.3 6.6E-06 47.9 13.0 114 444-560 246-374 (468)
262 PF10300 DUF3808: Protein of u 95.4 0.36 7.9E-06 47.3 13.3 24 332-355 190-213 (468)
263 KOG2114 Vacuolar assembly/sort 95.4 3.7 8E-05 41.9 22.9 178 123-321 335-516 (933)
264 KOG1586 Protein required for f 95.4 0.63 1.4E-05 39.4 12.3 128 408-535 85-231 (288)
265 PF04184 ST7: ST7 protein; In 95.4 0.26 5.7E-06 46.7 11.3 55 402-459 174-228 (539)
266 COG4785 NlpI Lipoprotein NlpI, 95.2 0.31 6.8E-06 40.6 10.0 181 377-564 78-268 (297)
267 PF08631 SPO22: Meiosis protei 95.1 2.5 5.5E-05 38.3 20.7 19 508-526 255-273 (278)
268 PRK09687 putative lyase; Provi 95.0 2.6 5.6E-05 38.2 24.2 135 200-339 140-276 (280)
269 KOG1920 IkappaB kinase complex 95.0 5.9 0.00013 42.3 23.2 117 66-186 683-819 (1265)
270 PF04184 ST7: ST7 protein; In 95.0 1.2 2.6E-05 42.5 14.3 102 433-534 261-381 (539)
271 KOG1920 IkappaB kinase complex 95.0 2.5 5.3E-05 44.9 17.6 110 125-258 942-1051(1265)
272 KOG2610 Uncharacterized conser 94.9 0.71 1.5E-05 41.3 12.0 118 133-258 114-234 (491)
273 PF13181 TPR_8: Tetratricopept 94.9 0.047 1E-06 30.5 3.4 31 501-531 3-33 (34)
274 KOG1464 COP9 signalosome, subu 94.8 2.4 5.2E-05 36.8 15.8 239 278-522 41-326 (440)
275 KOG1586 Protein required for f 94.8 1.9 4.2E-05 36.6 13.4 78 98-186 100-181 (288)
276 KOG1585 Protein required for f 94.8 1.5 3.2E-05 37.6 12.9 51 267-318 193-250 (308)
277 PF12921 ATP13: Mitochondrial 94.7 0.35 7.6E-06 37.3 8.8 54 154-214 47-100 (126)
278 KOG1585 Protein required for f 94.7 0.29 6.2E-06 41.6 8.7 167 125-323 34-218 (308)
279 smart00299 CLH Clathrin heavy 94.5 1.9 4.1E-05 34.2 14.0 126 162-306 10-136 (140)
280 COG4649 Uncharacterized protei 94.5 2.1 4.5E-05 34.5 12.8 119 406-527 68-195 (221)
281 KOG1941 Acetylcholine receptor 94.5 3.8 8.1E-05 37.4 15.8 123 336-458 128-273 (518)
282 COG4649 Uncharacterized protei 94.3 0.46 9.9E-06 38.1 8.6 127 433-561 61-195 (221)
283 PF13176 TPR_7: Tetratricopept 94.3 0.07 1.5E-06 30.4 3.2 25 502-526 2-26 (36)
284 COG2976 Uncharacterized protei 94.3 1.1 2.3E-05 37.0 10.8 93 437-532 95-192 (207)
285 KOG2066 Vacuolar assembly/sort 94.0 8.1 0.00018 39.3 22.5 160 67-233 363-536 (846)
286 KOG4648 Uncharacterized conser 93.8 0.12 2.5E-06 46.1 5.0 90 440-532 106-198 (536)
287 KOG4234 TPR repeat-containing 93.7 0.4 8.7E-06 39.4 7.4 93 403-499 102-201 (271)
288 PF13176 TPR_7: Tetratricopept 93.7 0.053 1.1E-06 30.9 1.9 25 536-560 2-26 (36)
289 KOG1464 COP9 signalosome, subu 93.5 3.1 6.7E-05 36.2 12.7 255 195-455 19-327 (440)
290 KOG0890 Protein kinase of the 93.5 19 0.00041 42.0 22.0 309 207-529 1388-1732(2382)
291 TIGR02561 HrpB1_HrpK type III 93.4 0.43 9.4E-06 37.3 6.8 53 511-563 22-74 (153)
292 PF09613 HrpB1_HrpK: Bacterial 93.3 0.36 7.7E-06 38.5 6.5 71 478-548 21-93 (160)
293 smart00299 CLH Clathrin heavy 93.2 3.5 7.5E-05 32.7 14.4 123 63-213 10-136 (140)
294 PF13431 TPR_17: Tetratricopep 93.1 0.075 1.6E-06 29.7 1.9 32 145-179 2-33 (34)
295 PRK15180 Vi polysaccharide bio 93.1 1.8 3.8E-05 41.0 11.4 93 440-534 332-426 (831)
296 PRK09687 putative lyase; Provi 92.8 7.3 0.00016 35.3 23.5 215 56-291 33-261 (280)
297 PF13174 TPR_6: Tetratricopept 92.3 0.25 5.5E-06 27.1 3.4 28 504-531 5-32 (33)
298 COG3629 DnrI DNA-binding trans 92.2 0.44 9.6E-06 42.2 6.3 60 468-527 154-215 (280)
299 COG2976 Uncharacterized protei 91.9 2.9 6.3E-05 34.6 10.0 91 129-231 96-188 (207)
300 COG1747 Uncharacterized N-term 91.9 13 0.00027 36.0 16.6 179 359-545 61-251 (711)
301 PRK11619 lytic murein transgly 91.9 17 0.00037 37.5 37.6 417 62-525 36-465 (644)
302 PF10602 RPN7: 26S proteasome 91.7 1.9 4.1E-05 35.8 9.2 62 125-186 39-100 (177)
303 COG3629 DnrI DNA-binding trans 91.7 0.88 1.9E-05 40.4 7.5 83 123-211 154-236 (280)
304 KOG4648 Uncharacterized conser 91.6 0.19 4.2E-06 44.8 3.4 90 474-563 104-195 (536)
305 COG4785 NlpI Lipoprotein NlpI, 91.4 2.7 5.8E-05 35.3 9.4 196 45-264 62-268 (297)
306 PF10602 RPN7: 26S proteasome 91.4 1.7 3.7E-05 36.1 8.7 96 398-493 38-139 (177)
307 PF09613 HrpB1_HrpK: Bacterial 91.3 3.1 6.8E-05 33.3 9.5 49 408-458 22-71 (160)
308 KOG3941 Intermediate in Toll s 91.3 4 8.7E-05 35.8 10.7 36 412-447 139-174 (406)
309 PF07719 TPR_2: Tetratricopept 91.1 0.17 3.6E-06 28.2 1.8 29 535-563 3-31 (34)
310 PF07035 Mic1: Colon cancer-as 90.8 7.9 0.00017 31.5 12.0 115 195-313 22-138 (167)
311 KOG2300 Uncharacterized conser 90.8 16 0.00035 35.1 22.0 413 127-559 12-511 (629)
312 PF07721 TPR_4: Tetratricopept 90.1 0.17 3.8E-06 26.1 1.1 23 535-557 3-25 (26)
313 PF10345 Cohesin_load: Cohesin 90.0 26 0.00056 36.3 26.3 462 24-493 28-603 (608)
314 PF09205 DUF1955: Domain of un 90.0 4.7 0.0001 30.9 8.8 58 269-326 91-151 (161)
315 KOG4507 Uncharacterized conser 89.8 2.1 4.6E-05 41.6 8.5 86 479-564 619-707 (886)
316 PRK12798 chemotaxis protein; R 89.7 19 0.0004 34.1 19.3 186 377-565 125-327 (421)
317 PF10345 Cohesin_load: Cohesin 89.7 27 0.00059 36.1 30.0 186 375-560 372-604 (608)
318 PF00515 TPR_1: Tetratricopept 89.5 0.26 5.5E-06 27.5 1.6 29 535-563 3-31 (34)
319 PF06552 TOM20_plant: Plant sp 89.5 0.28 6E-06 39.7 2.3 110 447-565 7-139 (186)
320 smart00028 TPR Tetratricopepti 89.4 0.72 1.5E-05 24.7 3.6 30 502-531 4-33 (34)
321 PF08631 SPO22: Meiosis protei 89.0 17 0.00038 32.9 22.1 23 537-559 250-272 (278)
322 KOG0276 Vesicle coat complex C 89.0 7.2 0.00016 38.4 11.4 150 7-185 598-747 (794)
323 KOG0276 Vesicle coat complex C 88.9 4.6 0.0001 39.6 10.1 25 161-185 668-692 (794)
324 KOG1550 Extracellular protein 88.9 29 0.00063 35.3 20.3 248 307-563 261-539 (552)
325 KOG4642 Chaperone-dependent E3 88.8 0.98 2.1E-05 38.4 5.1 85 440-527 19-106 (284)
326 TIGR03504 FimV_Cterm FimV C-te 88.6 0.63 1.4E-05 27.8 2.9 27 537-563 3-29 (44)
327 PF13174 TPR_6: Tetratricopept 88.1 0.27 5.8E-06 27.0 1.1 29 535-563 2-30 (33)
328 KOG1308 Hsp70-interacting prot 87.8 0.49 1.1E-05 42.5 2.9 87 479-565 126-214 (377)
329 COG4455 ImpE Protein of avirul 87.7 1.3 2.9E-05 37.1 5.1 63 471-533 5-69 (273)
330 PF14853 Fis1_TPR_C: Fis1 C-te 87.7 0.87 1.9E-05 28.6 3.2 32 504-535 6-37 (53)
331 PF13170 DUF4003: Protein of u 87.4 23 0.00049 32.4 14.3 132 312-476 79-226 (297)
332 KOG4507 Uncharacterized conser 87.4 1.9 4.1E-05 41.9 6.6 127 414-544 591-721 (886)
333 COG1747 Uncharacterized N-term 87.4 30 0.00065 33.7 14.1 174 58-243 64-249 (711)
334 PF07035 Mic1: Colon cancer-as 87.4 15 0.00031 30.1 12.7 115 154-282 24-138 (167)
335 PRK10941 hypothetical protein; 87.1 2 4.3E-05 38.4 6.3 62 502-563 184-245 (269)
336 KOG2471 TPR repeat-containing 87.0 7.2 0.00016 37.3 9.9 105 371-478 247-380 (696)
337 COG0790 FOG: TPR repeat, SEL1 87.0 24 0.00053 32.3 14.6 48 514-564 206-268 (292)
338 KOG3941 Intermediate in Toll s 86.8 5.2 0.00011 35.2 8.3 109 384-493 54-185 (406)
339 PF13374 TPR_10: Tetratricopep 86.7 0.53 1.2E-05 27.6 1.9 25 536-560 5-29 (42)
340 PRK13800 putative oxidoreducta 86.6 54 0.0012 35.9 23.6 78 261-342 786-864 (897)
341 PF14561 TPR_20: Tetratricopep 86.6 0.81 1.8E-05 32.8 3.0 53 498-550 21-75 (90)
342 PF13181 TPR_8: Tetratricopept 86.6 0.61 1.3E-05 25.8 2.0 28 535-562 3-30 (34)
343 cd00923 Cyt_c_Oxidase_Va Cytoc 86.5 3.6 7.8E-05 29.5 5.9 61 311-371 23-83 (103)
344 TIGR02508 type_III_yscG type I 86.3 10 0.00023 27.4 9.1 60 271-333 46-105 (115)
345 PF02259 FAT: FAT domain; Int 86.3 30 0.00066 32.7 18.8 63 362-424 144-212 (352)
346 PF11207 DUF2989: Protein of u 86.2 7.7 0.00017 32.5 8.8 79 406-486 117-197 (203)
347 KOG2396 HAT (Half-A-TPR) repea 86.2 34 0.00075 33.2 27.8 97 464-560 456-557 (568)
348 PF02284 COX5A: Cytochrome c o 86.1 6.2 0.00013 28.7 7.0 60 414-475 28-87 (108)
349 PF13374 TPR_10: Tetratricopep 85.9 1.7 3.6E-05 25.4 3.8 28 500-527 3-30 (42)
350 KOG0890 Protein kinase of the 85.6 86 0.0019 37.2 24.2 147 65-226 1388-1542(2382)
351 PF02284 COX5A: Cytochrome c o 85.4 3.4 7.3E-05 29.9 5.4 60 313-372 28-87 (108)
352 COG3947 Response regulator con 85.3 2.1 4.5E-05 37.8 5.3 59 501-559 281-339 (361)
353 PF00637 Clathrin: Region in C 85.2 0.53 1.2E-05 37.6 1.8 129 165-311 13-141 (143)
354 COG4455 ImpE Protein of avirul 84.8 5.3 0.00012 33.7 7.1 78 125-211 4-81 (273)
355 cd00923 Cyt_c_Oxidase_Va Cytoc 84.4 7.2 0.00016 28.0 6.6 60 413-474 24-83 (103)
356 PF04097 Nic96: Nup93/Nic96; 84.3 55 0.0012 33.9 21.3 60 162-230 114-180 (613)
357 PF11207 DUF2989: Protein of u 84.2 7.6 0.00016 32.6 7.8 77 137-221 121-197 (203)
358 COG2909 MalT ATP-dependent tra 84.1 60 0.0013 34.2 24.9 24 436-459 623-646 (894)
359 PF07721 TPR_4: Tetratricopept 84.1 2 4.4E-05 22.1 3.0 18 97-114 7-24 (26)
360 PRK15180 Vi polysaccharide bio 83.7 12 0.00026 35.7 9.7 129 375-506 300-432 (831)
361 KOG4570 Uncharacterized conser 83.6 7.6 0.00016 34.8 8.0 102 358-460 58-164 (418)
362 KOG0545 Aryl-hydrocarbon recep 82.7 5.3 0.00011 34.4 6.4 61 503-563 234-294 (329)
363 COG4976 Predicted methyltransf 82.1 2.5 5.4E-05 35.9 4.3 53 511-563 7-59 (287)
364 TIGR02508 type_III_yscG type I 82.0 17 0.00037 26.4 8.3 72 45-118 21-95 (115)
365 KOG0686 COP9 signalosome, subu 81.6 30 0.00064 32.6 11.1 27 363-391 305-331 (466)
366 PF00637 Clathrin: Region in C 81.6 1.4 3E-05 35.2 2.8 83 438-525 14-96 (143)
367 PF04910 Tcf25: Transcriptiona 81.5 17 0.00037 34.4 10.2 130 441-572 4-182 (360)
368 KOG1550 Extracellular protein 81.1 42 0.00091 34.2 13.5 148 409-565 262-429 (552)
369 PF09986 DUF2225: Uncharacteri 79.2 7.9 0.00017 33.3 6.7 29 535-563 167-195 (214)
370 KOG4570 Uncharacterized conser 79.0 17 0.00038 32.7 8.5 102 121-231 63-164 (418)
371 KOG0376 Serine-threonine phosp 78.8 2.4 5.3E-05 40.2 3.7 95 438-535 11-108 (476)
372 PF06552 TOM20_plant: Plant sp 78.4 13 0.00029 30.5 7.2 27 414-442 53-80 (186)
373 smart00386 HAT HAT (Half-A-TPR 78.0 2 4.4E-05 23.2 2.0 29 513-541 1-29 (33)
374 PRK13800 putative oxidoreducta 77.7 1.2E+02 0.0025 33.4 23.6 254 48-323 623-880 (897)
375 KOG0686 COP9 signalosome, subu 77.5 65 0.0014 30.5 12.6 102 124-227 152-254 (466)
376 PF10579 Rapsyn_N: Rapsyn N-te 76.7 4.4 9.6E-05 27.8 3.5 48 134-181 18-65 (80)
377 TIGR03504 FimV_Cterm FimV C-te 75.8 5.5 0.00012 23.8 3.4 26 300-325 4-29 (44)
378 TIGR02561 HrpB1_HrpK type III 75.6 39 0.00084 26.9 10.1 18 374-391 54-71 (153)
379 PF12862 Apc5: Anaphase-promot 75.5 6.7 0.00015 28.4 4.6 51 510-560 9-68 (94)
380 KOG0128 RNA-binding protein SA 75.1 1.1E+02 0.0025 32.0 24.8 109 412-521 442-556 (881)
381 PF04190 DUF410: Protein of un 74.4 40 0.00087 30.2 10.0 79 200-289 88-166 (260)
382 COG5159 RPN6 26S proteasome re 74.1 65 0.0014 28.8 10.7 34 300-333 8-41 (421)
383 KOG4642 Chaperone-dependent E3 73.9 26 0.00057 30.3 8.0 113 406-523 20-141 (284)
384 KOG3364 Membrane protein invol 73.6 10 0.00023 29.3 5.1 71 464-534 29-106 (149)
385 KOG2396 HAT (Half-A-TPR) repea 73.3 96 0.0021 30.4 27.4 62 58-119 103-168 (568)
386 KOG2063 Vacuolar assembly/sort 72.6 1.4E+02 0.0031 32.0 21.7 130 204-340 506-636 (877)
387 PF13934 ELYS: Nuclear pore co 71.7 69 0.0015 28.0 11.0 101 63-170 79-183 (226)
388 PF07720 TPR_3: Tetratricopept 71.3 14 0.00031 20.9 4.2 29 503-531 5-35 (36)
389 PF10579 Rapsyn_N: Rapsyn N-te 71.2 10 0.00022 26.1 4.1 45 409-453 19-65 (80)
390 PF13929 mRNA_stabil: mRNA sta 71.2 74 0.0016 28.7 10.5 113 107-227 144-263 (292)
391 cd08819 CARD_MDA5_2 Caspase ac 71.0 19 0.00041 25.4 5.5 60 50-110 23-85 (88)
392 PF13170 DUF4003: Protein of u 70.9 86 0.0019 28.8 13.8 51 413-463 79-135 (297)
393 PRK10941 hypothetical protein; 70.8 12 0.00027 33.5 5.9 63 472-534 186-250 (269)
394 cd08819 CARD_MDA5_2 Caspase ac 70.2 19 0.00042 25.4 5.4 61 222-283 22-85 (88)
395 PF10366 Vps39_1: Vacuolar sor 69.8 34 0.00073 25.6 7.1 27 297-323 41-67 (108)
396 COG3947 Response regulator con 69.7 15 0.00032 32.8 5.8 59 125-186 282-340 (361)
397 KOG3364 Membrane protein invol 67.9 21 0.00046 27.7 5.6 71 496-566 29-104 (149)
398 PF10255 Paf67: RNA polymerase 67.1 27 0.00059 33.3 7.5 94 57-150 72-192 (404)
399 PF07163 Pex26: Pex26 protein; 66.6 64 0.0014 28.8 9.0 85 370-454 89-181 (309)
400 PF09477 Type_III_YscG: Bacter 66.2 51 0.0011 24.4 8.5 98 35-135 13-113 (116)
401 PRK13184 pknD serine/threonine 65.7 2.1E+02 0.0046 31.3 22.1 95 64-158 479-588 (932)
402 KOG0551 Hsp90 co-chaperone CNS 65.6 14 0.0003 33.6 5.0 85 474-558 88-178 (390)
403 PF10255 Paf67: RNA polymerase 64.6 1.4E+02 0.003 28.8 13.6 85 206-290 79-190 (404)
404 COG2909 MalT ATP-dependent tra 64.4 2E+02 0.0044 30.6 25.1 48 377-424 471-525 (894)
405 KOG4077 Cytochrome c oxidase, 64.0 30 0.00065 26.4 5.7 58 314-371 68-125 (149)
406 KOG4279 Serine/threonine prote 63.7 48 0.001 34.0 8.7 165 365-532 202-399 (1226)
407 PF14853 Fis1_TPR_C: Fis1 C-te 63.5 7.2 0.00016 24.5 2.2 31 536-566 4-34 (53)
408 PF11846 DUF3366: Domain of un 63.3 23 0.0005 30.0 6.0 37 494-530 139-175 (193)
409 KOG2300 Uncharacterized conser 63.1 1.6E+02 0.0034 28.9 31.1 104 44-147 24-152 (629)
410 KOG0545 Aryl-hydrocarbon recep 63.0 44 0.00095 29.1 7.2 64 469-532 232-297 (329)
411 COG2912 Uncharacterized conser 62.8 30 0.00064 30.8 6.4 55 507-561 189-243 (269)
412 PF11846 DUF3366: Domain of un 62.1 23 0.0005 30.0 5.8 32 462-493 139-170 (193)
413 COG4976 Predicted methyltransf 61.8 17 0.00037 31.1 4.6 56 478-533 6-63 (287)
414 PF08311 Mad3_BUB1_I: Mad3/BUB 61.2 66 0.0014 24.9 7.6 43 414-456 81-124 (126)
415 KOG0530 Protein farnesyltransf 60.7 1.2E+02 0.0026 27.0 9.4 135 407-545 54-193 (318)
416 KOG0376 Serine-threonine phosp 60.6 12 0.00027 35.8 4.1 102 403-509 11-115 (476)
417 KOG2063 Vacuolar assembly/sort 60.5 2.5E+02 0.0054 30.3 24.2 27 297-323 506-532 (877)
418 KOG3824 Huntingtin interacting 60.3 12 0.00025 33.5 3.6 58 478-535 127-186 (472)
419 PF14863 Alkyl_sulf_dimr: Alky 60.2 16 0.00035 28.8 4.1 63 483-548 57-119 (141)
420 PF09670 Cas_Cas02710: CRISPR- 60.2 1.1E+02 0.0024 29.4 10.4 51 374-424 141-197 (379)
421 PF12862 Apc5: Anaphase-promot 59.9 30 0.00065 25.0 5.3 26 504-529 46-71 (94)
422 KOG0403 Neoplastic transformat 59.2 1.7E+02 0.0038 28.2 17.1 24 298-321 348-371 (645)
423 KOG2422 Uncharacterized conser 59.2 2E+02 0.0044 28.9 13.8 161 73-240 251-457 (665)
424 PF07163 Pex26: Pex26 protein; 58.7 86 0.0019 28.1 8.4 68 271-338 90-161 (309)
425 PF08424 NRDE-2: NRDE-2, neces 57.7 1.3E+02 0.0029 28.0 10.4 115 412-530 47-185 (321)
426 PF04034 DUF367: Domain of unk 55.4 89 0.0019 24.1 7.0 59 466-524 65-124 (127)
427 PF11768 DUF3312: Protein of u 55.4 2.1E+02 0.0045 28.7 11.2 24 368-391 412-435 (545)
428 KOG4077 Cytochrome c oxidase, 55.3 39 0.00085 25.8 5.0 50 489-538 74-123 (149)
429 KOG2471 TPR repeat-containing 54.8 66 0.0014 31.3 7.6 60 500-559 620-681 (696)
430 PF11838 ERAP1_C: ERAP1-like C 54.2 1.9E+02 0.004 26.9 15.6 34 527-560 269-302 (324)
431 COG5191 Uncharacterized conser 54.0 49 0.0011 30.0 6.3 78 464-541 104-184 (435)
432 PF14561 TPR_20: Tetratricopep 53.6 59 0.0013 23.3 5.8 28 466-493 21-48 (90)
433 TIGR02270 conserved hypothetic 53.4 2.2E+02 0.0048 27.7 22.5 231 67-321 45-278 (410)
434 KOG1498 26S proteasome regulat 52.4 2.1E+02 0.0046 27.1 10.8 97 471-567 135-246 (439)
435 PF08311 Mad3_BUB1_I: Mad3/BUB 51.9 1.1E+02 0.0023 23.8 7.4 57 125-184 68-124 (126)
436 PF12968 DUF3856: Domain of Un 49.6 1.2E+02 0.0025 23.2 8.6 83 444-526 22-127 (144)
437 PF10366 Vps39_1: Vacuolar sor 48.5 1.1E+02 0.0025 22.8 7.4 27 124-150 41-67 (108)
438 KOG1308 Hsp70-interacting prot 48.4 9.4 0.0002 34.8 1.2 63 510-572 125-187 (377)
439 PF11817 Foie-gras_1: Foie gra 47.9 42 0.0009 29.8 5.2 18 440-457 187-204 (247)
440 KOG2659 LisH motif-containing 47.6 1.3E+02 0.0028 26.1 7.6 97 360-456 22-128 (228)
441 COG4941 Predicted RNA polymera 47.6 2.4E+02 0.0051 26.2 10.8 118 412-533 272-399 (415)
442 PRK10564 maltose regulon perip 47.0 37 0.0008 30.7 4.6 40 297-336 259-298 (303)
443 KOG3824 Huntingtin interacting 46.4 23 0.00051 31.7 3.3 53 442-497 127-181 (472)
444 PF04097 Nic96: Nup93/Nic96; 46.4 3.6E+02 0.0079 28.1 27.6 21 477-497 515-535 (613)
445 PF04190 DUF410: Protein of un 46.0 2.2E+02 0.0049 25.5 14.0 83 362-460 88-170 (260)
446 cd00280 TRFH Telomeric Repeat 45.9 44 0.00094 27.7 4.4 14 447-460 85-98 (200)
447 cd00280 TRFH Telomeric Repeat 45.9 1.6E+02 0.0034 24.6 7.4 26 371-396 118-143 (200)
448 PF09986 DUF2225: Uncharacteri 45.4 1.4E+02 0.003 25.9 7.8 88 442-529 88-195 (214)
449 KOG2908 26S proteasome regulat 44.5 1.7E+02 0.0037 27.1 8.2 66 374-439 85-164 (380)
450 PF07575 Nucleopor_Nup85: Nup8 43.7 3.8E+02 0.0083 27.6 13.7 28 91-119 149-176 (566)
451 KOG4814 Uncharacterized conser 43.7 33 0.00071 34.4 4.1 57 471-527 398-456 (872)
452 PF11663 Toxin_YhaV: Toxin wit 42.8 35 0.00077 26.5 3.3 31 306-338 106-136 (140)
453 PF14689 SPOB_a: Sensor_kinase 42.3 35 0.00075 22.4 2.9 31 199-229 20-50 (62)
454 KOG0889 Histone acetyltransfer 42.2 8.6E+02 0.019 31.3 15.1 22 165-186 2488-2509(3550)
455 PF11817 Foie-gras_1: Foie gra 42.1 82 0.0018 28.0 6.2 64 161-227 180-243 (247)
456 PRK10564 maltose regulon perip 41.6 56 0.0012 29.6 4.8 39 399-437 260-298 (303)
457 KOG1839 Uncharacterized protei 41.5 98 0.0021 34.3 7.4 145 165-317 938-1121(1236)
458 KOG0292 Vesicle coat complex C 41.4 3.2E+02 0.0069 29.3 10.4 156 336-527 626-781 (1202)
459 COG5191 Uncharacterized conser 41.1 30 0.00065 31.2 3.1 79 428-508 103-185 (435)
460 PF04762 IKI3: IKI3 family; I 40.2 5.6E+02 0.012 28.4 15.6 119 65-186 699-841 (928)
461 PHA02537 M terminase endonucle 39.6 1.4E+02 0.0031 26.0 6.9 21 511-531 190-210 (230)
462 KOG0292 Vesicle coat complex C 39.5 73 0.0016 33.5 5.8 44 479-525 655-698 (1202)
463 KOG3807 Predicted membrane pro 38.8 46 0.001 30.3 4.0 105 380-492 232-336 (556)
464 KOG2422 Uncharacterized conser 38.6 4.4E+02 0.0094 26.7 13.4 51 440-493 351-404 (665)
465 COG5159 RPN6 26S proteasome re 38.5 3E+02 0.0066 24.9 15.3 26 206-231 7-32 (421)
466 KOG1839 Uncharacterized protei 38.4 1.8E+02 0.0039 32.4 8.7 156 129-287 939-1122(1236)
467 cd08326 CARD_CASP9 Caspase act 38.4 1.1E+02 0.0023 21.7 5.0 25 281-305 47-71 (84)
468 KOG2581 26S proteasome regulat 38.1 3.7E+02 0.0081 25.8 9.6 127 198-324 120-276 (493)
469 PRK02287 hypothetical protein; 38.0 2.1E+02 0.0047 23.5 7.2 60 467-526 107-167 (171)
470 PF02184 HAT: HAT (Half-A-TPR) 37.0 61 0.0013 17.9 2.7 24 447-473 3-26 (32)
471 COG2178 Predicted RNA-binding 36.7 1E+02 0.0022 25.9 5.2 54 174-228 84-147 (204)
472 PF06957 COPI_C: Coatomer (COP 36.2 1.8E+02 0.0039 28.2 7.6 44 489-532 288-333 (422)
473 KOG1463 26S proteasome regulat 36.1 3.7E+02 0.008 25.1 15.6 163 368-530 132-318 (411)
474 PF11663 Toxin_YhaV: Toxin wit 35.8 88 0.0019 24.4 4.4 31 542-572 104-134 (140)
475 KOG4521 Nuclear pore complex, 35.8 6.7E+02 0.015 28.1 12.0 22 369-390 925-946 (1480)
476 KOG0403 Neoplastic transformat 34.8 1.6E+02 0.0036 28.4 6.8 69 207-275 514-585 (645)
477 cd08326 CARD_CASP9 Caspase act 33.9 1.1E+02 0.0025 21.6 4.6 34 72-105 42-75 (84)
478 COG5116 RPN2 26S proteasome re 33.8 5.2E+02 0.011 26.2 10.2 65 501-565 174-240 (926)
479 PF11848 DUF3368: Domain of un 33.6 1.2E+02 0.0025 18.6 4.9 33 407-439 13-45 (48)
480 TIGR02270 conserved hypothetic 33.4 4.7E+02 0.01 25.5 23.9 119 200-320 98-216 (410)
481 KOG2062 26S proteasome regulat 33.1 6E+02 0.013 26.8 30.5 121 373-497 510-636 (929)
482 PF15297 CKAP2_C: Cytoskeleton 33.0 2.1E+02 0.0045 26.8 7.1 72 134-213 114-186 (353)
483 COG0790 FOG: TPR repeat, SEL1 32.9 3.8E+02 0.0083 24.4 17.9 51 279-329 92-147 (292)
484 PF10516 SHNi-TPR: SHNi-TPR; 32.8 98 0.0021 17.9 3.4 27 501-527 3-29 (38)
485 smart00777 Mad3_BUB1_I Mad3/BU 32.6 2.4E+02 0.0051 21.9 7.3 41 415-455 82-123 (125)
486 PF10475 DUF2450: Protein of u 31.9 84 0.0018 28.8 4.7 23 293-315 195-217 (291)
487 KOG4279 Serine/threonine prote 30.8 1.9E+02 0.0041 30.1 7.0 18 540-557 351-368 (1226)
488 smart00777 Mad3_BUB1_I Mad3/BU 30.7 2E+02 0.0043 22.3 5.8 42 450-492 82-124 (125)
489 TIGR02710 CRISPR-associated pr 30.3 3.5E+02 0.0075 25.9 8.3 21 406-426 140-160 (380)
490 KOG2168 Cullins [Cell cycle co 30.2 7.2E+02 0.016 26.7 15.2 17 478-494 718-734 (835)
491 PF10475 DUF2450: Protein of u 30.0 1.9E+02 0.0041 26.5 6.7 51 128-186 104-154 (291)
492 KOG2581 26S proteasome regulat 29.8 5.2E+02 0.011 24.9 10.3 24 433-456 211-234 (493)
493 PF09670 Cas_Cas02710: CRISPR- 29.7 5.2E+02 0.011 24.9 9.8 18 307-324 143-160 (379)
494 KOG4521 Nuclear pore complex, 29.7 8.5E+02 0.018 27.4 12.5 114 203-318 984-1125(1480)
495 KOG2659 LisH motif-containing 29.5 3.8E+02 0.0083 23.4 8.4 95 395-492 25-128 (228)
496 KOG0991 Replication factor C, 29.4 4E+02 0.0086 23.5 10.4 127 302-437 137-279 (333)
497 COG0735 Fur Fe2+/Zn2+ uptake r 29.3 2.7E+02 0.0058 22.3 6.6 44 297-340 22-65 (145)
498 PF13762 MNE1: Mitochondrial s 29.1 3E+02 0.0065 22.0 7.9 78 367-444 42-128 (145)
499 smart00544 MA3 Domain in DAP-5 28.9 2.5E+02 0.0054 21.0 8.0 23 2-24 9-31 (113)
500 PF09797 NatB_MDM20: N-acetylt 28.9 5E+02 0.011 24.8 9.6 46 138-186 199-244 (365)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-78 Score=632.79 Aligned_cols=560 Identities=34% Similarity=0.579 Sum_probs=523.3
Q ss_pred ChhhhhcCCCHHHHHHHhccCCCCchhHHHHHHHHHHHcCCCCChHHHHHHHhhCC----CCCcchHHHHHHHHHccCCH
Q 036340 1 MISGYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP----ERDCVTWNTVISGYAKTGEM 76 (579)
Q Consensus 1 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~ 76 (579)
||..|++.|+++.|.++|++|.+||..+|+.++.+|.+.|+ +++|..+|++|. .||..||+.++.+|...+++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~---~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY---FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 47789999999999999999999999999999999999988 999999999986 68999999999998888888
Q ss_pred HHHHHHhhcCC----CCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCC
Q 036340 77 EEALRLFNSMP----ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRC 152 (579)
Q Consensus 77 ~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 152 (579)
..+.+++..+. .|++.++++|+.+|.+.|+++.|.++|++|..+|..+|+.++.+|++.|++++|+++|++|...
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~- 282 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL- 282 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-
Confidence 88888887776 5788889999999999999999999999998888899999999999999999999999998887
Q ss_pred CCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 036340 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERD 232 (579)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 232 (579)
+..|+..+|+.++.+|++.|+++.|.+++..+. ..|+.||..+|+.++.+|++.|++++|.++|++|.++|
T Consensus 283 -g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~--------~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 353 (857)
T PLN03077 283 -SVDPDLMTITSVISACELLGDERLGREMHGYVV--------KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353 (857)
T ss_pred -CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH--------HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Confidence 788888899999999999999999999998888 77888899999999999999999999999999988888
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhhcCC----C-----------------------------------CChhhHHHHHHH
Q 036340 233 TFSWNTMISGYIHVLDMEEASNLFVKMP----H-----------------------------------PDTLTWNAMVSG 273 (579)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~-----------------------------------~~~~~~~~l~~~ 273 (579)
..+|+.++.+|.+.|++++|.++|++|. . |+..+++.|+.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 8889999999988888888888888774 2 445567788888
Q ss_pred HHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHH
Q 036340 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353 (579)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 353 (579)
|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|.+.|+.+.+.+++
T Consensus 434 y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred HHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999986 69999999999999999999999999999
Q ss_pred HH-HhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh
Q 036340 354 QM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432 (579)
Q Consensus 354 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 432 (579)
.. .+.++.++..++++++.+|++.|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~ 590 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Confidence 99 89999999999999999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVH 512 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 512 (579)
||+.++.+|.+.|.+++|.++|+.|.+++++.|+..+|..++.+|.+.|++++|.+++++|+.+||..+|+.++.+|..+
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH 670 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999998777999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCCCCcceeeEec
Q 036340 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDFS 576 (579)
Q Consensus 513 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 576 (579)
|+.+.++...+++++++|+++..|..|+++|...|+|++|.++.+.|+++|++++||+|||+++
T Consensus 671 ~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~ 734 (857)
T PLN03077 671 RHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK 734 (857)
T ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999999974
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.1e-68 Score=554.33 Aligned_cols=546 Identities=26% Similarity=0.397 Sum_probs=517.9
Q ss_pred ChhhhhcCCCHHHHHHHhccCCC----CchhHHHHHHHHHHHcCCCCChHHHHHHHhhCC----CCCcchHHHHHHHHHc
Q 036340 1 MISGYVKRREMAKARKLFDEMPQ----RDVVSWNVMISGYISSRGSGFLEEARYLFDIMP----ERDCVTWNTVISGYAK 72 (579)
Q Consensus 1 l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~ 72 (579)
++..|++.|++++|..+|+.+.+ |+..+|..++.++...+. ++.|..++..+. .+++..+|+++..|++
T Consensus 57 ~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~ 133 (857)
T PLN03077 57 QLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRA---VEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR 133 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCC---HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh
Confidence 46789999999999999999976 788899999999988877 999999998765 5788899999999999
Q ss_pred cCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCC----CCCcchHHHHHHHHHhCCCHHHHHHHHHHh
Q 036340 73 TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP----GRDSASLSALVSGLIQNGELDEAARVLVKC 148 (579)
Q Consensus 73 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 148 (579)
.|+++.|.++|++|.+||..+|+.+|.+|.+.|++++|+++|++|. .||..+|+.++.++...+++..+.+++..+
T Consensus 134 ~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~ 213 (857)
T PLN03077 134 FGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213 (857)
T ss_pred CCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999985 489999999999999999999999999999
Q ss_pred ccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036340 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228 (579)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (579)
.+. +..++..+++.++.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|+++|.+|
T Consensus 214 ~~~--g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~------------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 214 VRF--GFELDVDVVNALITMYVKCGDVVSARLVFDRMP------------RRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred HHc--CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC------------CCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 987 889999999999999999999999999999997 789999999999999999999999999999
Q ss_pred C----CCChhHHHHHHHHHHhcCChHHHHHHhhcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHH
Q 036340 229 L----ERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300 (579)
Q Consensus 229 ~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 300 (579)
. .||..+|+.++.++.+.|+.+.|.+++..+. .||..+|+.|+.+|++.|++++|.++|++|..+|..+|+.
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~ 359 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Confidence 4 4799999999999999999999999999887 7999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH-HhhcCCCCchHHHHHHHHhhhcCC
Q 036340 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGA 379 (579)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 379 (579)
++.+|++.|++++|+++|++|.+.|+.||..||..++.+|.+.|+++.+.++++. .+.+..|+..+++.++.+|++.|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999 889999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHH
Q 036340 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459 (579)
Q Consensus 380 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 459 (579)
+++|.++|++|. .+|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|..+.+.+++..+.+
T Consensus 440 ~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 440 IDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred HHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 999999999998 78999999999999999999999999999986 6999999999999999999999999999999987
Q ss_pred hhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhh--cCCCCCCCch
Q 036340 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK--VEPENSTPYV 537 (579)
Q Consensus 460 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~ 537 (579)
. |+.++..+++.++.+|.++|++++|..+|+.+ .||..+|+.++.+|.+.|+.++|.++|++|.+ ..|+ ..+|.
T Consensus 518 ~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~ 593 (857)
T PLN03077 518 T-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFI 593 (857)
T ss_pred h-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHH
Confidence 6 99999999999999999999999999999998 78999999999999999999999999999986 4466 45699
Q ss_pred hhhhhhhhcCCchHHHHHHHHHH-hCCCCCCCc
Q 036340 538 LLYNMYADVGRWDDANEVRLLMK-SNNIKKPTG 569 (579)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ 569 (579)
.++.+|.+.|++++|.++|+.|. +.|+.|+..
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 99999999999999999999998 778887654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-65 Score=522.92 Aligned_cols=473 Identities=32% Similarity=0.532 Sum_probs=447.0
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHccCCC-----CCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHH
Q 036340 89 RNVVSWNAMISGFLQNGDVANAIEFFDRMPG-----RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN 163 (579)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 163 (579)
.+..+|+.++..+.+.|++++|+++|+.|.. ++..+|+.++.++.+.++++.+.+++..+.+. +..|+..+|+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~--g~~~~~~~~n 162 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS--GFEPDQYMMN 162 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCcchHHHH
Confidence 4556788888888888999999888888753 46788999999999999999999999998887 7788899999
Q ss_pred HHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHH
Q 036340 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTFSWNTM 239 (579)
Q Consensus 164 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l 239 (579)
.++.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+ ++..+|..+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~------------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 230 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP------------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC------------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence 99999999999999999999997 68899999999999999999999999999844 678899999
Q ss_pred HHHHHhcCChHHHHHHhhcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHH
Q 036340 240 ISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315 (579)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (579)
+.++...|..+.+.+++..+. .+|..+++.|+.+|++.|++++|.++|++|.++|+.+|+.++.+|++.|++++|+
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHH
Confidence 999999999999988877665 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH-HhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhccCCC
Q 036340 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK 394 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 394 (579)
++|++|.+.|+.||..||+.++.+|.+.|+++.|.+++.. .+.+++|+..+++.++.+|++.|++++|.++|++|. .|
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~ 389 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RK 389 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CC
Confidence 9999999999999999999999999999999999999998 889999999999999999999999999999999998 79
Q ss_pred CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 036340 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474 (579)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 474 (579)
|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+++++.|+..+|+.++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988789999999999999
Q ss_pred HHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHH
Q 036340 475 DIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANE 554 (579)
Q Consensus 475 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 554 (579)
.+|.+.|++++|.+++++++..|+..+|+.++.+|..+|+++.|..+++++.++.|++...|..|+.+|.+.|+|++|.+
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCcceeeEec
Q 036340 555 VRLLMKSNNIKKPTGYSWVDFS 576 (579)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~ 576 (579)
++++|+++|+++.||++|+.++
T Consensus 550 v~~~m~~~g~~k~~g~s~i~~~ 571 (697)
T PLN03081 550 VVETLKRKGLSMHPACTWIEVK 571 (697)
T ss_pred HHHHHHHcCCccCCCeeEEEEC
Confidence 9999999999999999999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-61 Score=496.62 Aligned_cols=500 Identities=18% Similarity=0.275 Sum_probs=450.3
Q ss_pred CCCcchHHHHHHHHHccCCHHHHHHHhhcCCC-----CchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHH
Q 036340 57 ERDCVTWNTVISGYAKTGEMEEALRLFNSMPA-----RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSG 131 (579)
Q Consensus 57 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 131 (579)
.++...|..++..+++.|++++|+++|++|.. ++...++.++.+|.+.|.++.|..+|+.|..|+..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46677889999999999999999999999984 4455667788889999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHH
Q 036340 132 LIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMC 211 (579)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 211 (579)
|++.|++++|.++|+.|.+. +..|+..+|+.++.+|++.|++++|.++|++|. ..|+.||..+|+.++.+
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~--Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~--------~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEA--GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV--------NAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHH
Confidence 99999999999999999987 888999999999999999999999999999998 77899999999999999
Q ss_pred HHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCChHHHHHHhhcCC------CCChhhHHHHHHHHHhcCCHH
Q 036340 212 YAKAGDVVSAREIFEQML----ERDTFSWNTMISGYIHVLDMEEASNLFVKMP------HPDTLTWNAMVSGYAQIGNLE 281 (579)
Q Consensus 212 ~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~ 281 (579)
|++.|++++|.++|+.|. .||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999994 4789999999999999999999999999984 689999999999999999999
Q ss_pred HHHHHHccCCC----CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH-H
Q 036340 282 LALDFFKRMPQ----KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-V 356 (579)
Q Consensus 282 ~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~ 356 (579)
+|.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|+++.|.++++. .
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999975 677899999999999999999999999999999999999999999999999999999999998 8
Q ss_pred hhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc---CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhh
Q 036340 357 TKTVIPDVPINNALITMYARCGAIVEARIIFEEMK---LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433 (579)
Q Consensus 357 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 433 (579)
+.++.|+..+|+.++.+|++.|++++|.++|++|. ..||..+|+.+|.+|++.|++++|+++|++|...|+.||..|
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 88999999999999999999999999999999985 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhh----cc-------------------CChHHHHHHH
Q 036340 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG----RH-------------------GRLEDAMDLI 490 (579)
Q Consensus 434 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~ 490 (579)
|+.++.+|++.|+++.|.++++.|.+. |+.||..+|+.++..+. ++ +..++|..+|
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 999999999999999999999999776 99999999998876532 11 2346799999
Q ss_pred HhC---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh-hcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCC
Q 036340 491 KGM---PFEPDKAVWGALLGACRVHNNVELAQVAAEALM-KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566 (579)
Q Consensus 491 ~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 566 (579)
++| +..||..+|+.++.++.+.+..+.+..+++.+. ...+.+..+|..|+..+.+. .++|..++++|.+.|+.|
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCC
Confidence 999 689999999999987788888898888887765 33455566789998877322 368999999999999988
Q ss_pred CCc
Q 036340 567 PTG 569 (579)
Q Consensus 567 ~~~ 569 (579)
+-.
T Consensus 914 ~~~ 916 (1060)
T PLN03218 914 SVS 916 (1060)
T ss_pred Ccc
Confidence 765
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-60 Score=485.40 Aligned_cols=501 Identities=15% Similarity=0.238 Sum_probs=459.3
Q ss_pred HHHHHhccCCC--CchhHHHHHHHHHHHcCCCCChHHHHHHHhhCCC-----CCcchHHHHHHHHHccCCHHHHHHHhhc
Q 036340 13 KARKLFDEMPQ--RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE-----RDCVTWNTVISGYAKTGEMEEALRLFNS 85 (579)
Q Consensus 13 ~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (579)
.+....+.... ++...|..++..+++.|+ +++|.++|++|.+ ++..+++.++..|.+.|..++|..+|+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~---l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~ 431 (1060)
T PLN03218 355 NSLAAYNGGVSGKRKSPEYIDAYNRLLRDGR---IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431 (1060)
T ss_pred hhHHHhccccCCCCCchHHHHHHHHHHHCcC---HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444454443 567789999999998888 9999999999985 4445678888999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHhcCChhhHHHHHccCCC----CCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhh
Q 036340 86 MPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA 161 (579)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 161 (579)
|..|+..+|+.++.+|++.|+++.|.++|+.|.+ +|..+|+.++.+|++.|++++|.++|++|.+. +..|+..+
T Consensus 432 M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~--Gv~PdvvT 509 (1060)
T PLN03218 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA--GVEANVHT 509 (1060)
T ss_pred cCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc--CCCCCHHH
Confidence 9999999999999999999999999999999964 78899999999999999999999999999987 88999999
Q ss_pred HHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcC------CCChhH
Q 036340 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML------ERDTFS 235 (579)
Q Consensus 162 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~ 235 (579)
|+.++.+|++.|++++|.++|++|. ..|+.||..+|+.++.+|++.|++++|.++|++|. .||..+
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~--------~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT 581 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMR--------SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 9999999999999999999999998 77999999999999999999999999999999994 478999
Q ss_pred HHHHHHHHHhcCChHHHHHHhhcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHccCCC----CChhhHHHHHHHHHh
Q 036340 236 WNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ----KNLVSWNSMIAGCET 307 (579)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~ 307 (579)
|+.++.+|++.|++++|.++|+.|. .|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999998 68889999999999999999999999999985 899999999999999
Q ss_pred CCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH-HhhcCCCCchHHHHHHHHhhhcCCHHHHHHH
Q 036340 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARII 386 (579)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 386 (579)
.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|+++.|.++|+. ...+..|+..+|+.++.+|++.|++++|.++
T Consensus 662 ~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlel 741 (1060)
T PLN03218 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 7788999999999999999999999999999
Q ss_pred HHhcc---CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcc--------------------
Q 036340 387 FEEMK---LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH-------------------- 443 (579)
Q Consensus 387 ~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------------------- 443 (579)
|++|. ..||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+
T Consensus 742 f~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~ 821 (1060)
T PLN03218 742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRP 821 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 99985 6899999999999999999999999999999999999999999999875432
Q ss_pred ---cCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCC---CCCCHHHHHHHHHHHhhcCCHHH
Q 036340 444 ---AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP---FEPDKAVWGALLGACRVHNNVEL 517 (579)
Q Consensus 444 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 517 (579)
.+..+.|..+|++|++. |+.||..+|..++.++...+....+..+++.+. ..|+..+|+.++.++.+. .++
T Consensus 822 ~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~ 898 (1060)
T PLN03218 822 QIENKWTSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPR 898 (1060)
T ss_pred ccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHH
Confidence 12346799999999877 999999999999999999999999999999884 556788999999988432 468
Q ss_pred HHHHHHHHhhcC
Q 036340 518 AQVAAEALMKVE 529 (579)
Q Consensus 518 A~~~~~~~~~~~ 529 (579)
|..+++.|.+..
T Consensus 899 A~~l~~em~~~G 910 (1060)
T PLN03218 899 AFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHHHcC
Confidence 999999998744
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-57 Score=465.15 Aligned_cols=445 Identities=24% Similarity=0.370 Sum_probs=419.0
Q ss_pred hhhhhcCCCHHHHHHHhccCCC-----CchhHHHHHHHHHHHcCCCCChHHHHHHHhhCC----CCCcchHHHHHHHHHc
Q 036340 2 ISGYVKRREMAKARKLFDEMPQ-----RDVVSWNVMISGYISSRGSGFLEEARYLFDIMP----ERDCVTWNTVISGYAK 72 (579)
Q Consensus 2 ~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~ 72 (579)
|..|.+.|++++|+++|+.|.. ||..+|+.++.++.+.+. ++.|.+++..+. .||+.+|+.++..|++
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~---~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k 170 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS---IRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK 170 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc
Confidence 6788999999999999999853 688999999999999988 999999999886 6899999999999999
Q ss_pred cCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCC----CCcchHHHHHHHHHhCCCHHHHHHHHHHh
Q 036340 73 TGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG----RDSASLSALVSGLIQNGELDEAARVLVKC 148 (579)
Q Consensus 73 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 148 (579)
.|++++|.++|++|..||..+|+.++.+|.+.|++++|.++|++|.+ ++..+|..++.++...|..+.+.+++..+
T Consensus 171 ~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 171 CGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred CCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999953 68899999999999999999999999999
Q ss_pred ccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036340 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228 (579)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (579)
.+. +..++..+|+.++.+|++.|++++|.++|+.|. ++|..+|+.++.+|++.|++++|.++|++|
T Consensus 251 ~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 251 LKT--GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------------EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHh--CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 887 788899999999999999999999999999997 679999999999999999999999999999
Q ss_pred ----CCCChhHHHHHHHHHHhcCChHHHHHHhhcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHH
Q 036340 229 ----LERDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS 300 (579)
Q Consensus 229 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 300 (579)
..||..+|+.++.+|.+.|++++|.+++..|. .||..+++.|+.+|++.|++++|.++|++|.++|..+||.
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 45799999999999999999999999999987 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH-H-hhcCCCCchHHHHHHHHhhhcC
Q 036340 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-V-TKTVIPDVPINNALITMYARCG 378 (579)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~ 378 (579)
||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+. . ..++.|+..+|+.++.+|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999998 3 3689999999999999999999
Q ss_pred CHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHHhcccCcHHHHHHHHHHh
Q 036340 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVLSACAHAGLVEEGRQHFKSM 457 (579)
Q Consensus 379 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 457 (579)
++++|.++++++...|+..+|++++.+|...|+++.|..+++++. ++.|+ ..+|..++..|++.|++++|.++++.|
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999889999999999999999999999999999997 55675 459999999999999999999999999
Q ss_pred HHhhCCCCC
Q 036340 458 VNEYGIEPR 466 (579)
Q Consensus 458 ~~~~~~~~~ 466 (579)
.++ |+...
T Consensus 555 ~~~-g~~k~ 562 (697)
T PLN03081 555 KRK-GLSMH 562 (697)
T ss_pred HHc-CCccC
Confidence 766 77543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.3e-37 Score=333.27 Aligned_cols=541 Identities=13% Similarity=0.085 Sum_probs=383.2
Q ss_pred hhhhcCCCHHHHHHHhccCCC---CchhHHHHHHHHHHHcCCCCChHHHHHHHhhCC---CCCcchHHHHHHHHHccCCH
Q 036340 3 SGYVKRREMAKARKLFDEMPQ---RDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---ERDCVTWNTVISGYAKTGEM 76 (579)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 76 (579)
..+.+.|++++|...|+++.+ .++..+..+...+...|+ +++|...++++. +.++..+..+...+.+.|++
T Consensus 303 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 303 ASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR---VDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCH
Confidence 356778888888888888765 345566677777777777 888888888876 34556778888888888888
Q ss_pred HHHHHHhhcCC---CCchhhHHHHHHHHHhcCChhhHHHHHccCCCC---CcchHHHHHHHHHhCCCHHHHHHHHHHhcc
Q 036340 77 EEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---DSASLSALVSGLIQNGELDEAARVLVKCGS 150 (579)
Q Consensus 77 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 150 (579)
++|.++|+++. +.+...+..+...+...|++++|.+.++.+... .......++..+.+.|++++|..+++.+..
T Consensus 380 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 380 EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888888776 334556777778888888888888888776542 234455566777788888888888888776
Q ss_pred CCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 036340 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230 (579)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 230 (579)
..|++..++..++..+...|++++|.+.|+++... .+.+...+..++..+...|++++|.+.|+++.+
T Consensus 460 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 527 (899)
T TIGR02917 460 ---KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI---------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527 (899)
T ss_pred ---hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556667778888888888888888888877621 134455667777777788888888888877754
Q ss_pred C---ChhHHHHHHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHH
Q 036340 231 R---DTFSWNTMISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ---KNLVSWNSM 301 (579)
Q Consensus 231 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 301 (579)
. +..++..+...+...|+.++|...++++. +.+...+..++..+...|++++|..+++.+.+ .+...|..+
T Consensus 528 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 607 (899)
T TIGR02917 528 IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLML 607 (899)
T ss_pred hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 2 45567777777777788888877777765 34455666677777777777777777777653 345567777
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHH
Q 036340 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIV 381 (579)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 381 (579)
+.++...|++++|...|+++.+.. +.+...+..+..++...|+++.|..+++......+.+...+..++..+...|+++
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 777777777777777777776543 2244556666667777777777777777755555666677777777777777777
Q ss_pred HHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHH
Q 036340 382 EARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459 (579)
Q Consensus 382 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 459 (579)
+|..+++.+. .+++...+..++..+...|++++|+..|+++... .|+..++..++.++...|++++|.+.++.+++
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777764 2334555666777777777777777777777753 35545666666777777777777777777765
Q ss_pred hhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCch
Q 036340 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-P-FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537 (579)
Q Consensus 460 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 537 (579)
. .+.+...+..++.++...|++++|...|+++ . .++++..+..++..+...|+ .+|+..++++++..|+++..+.
T Consensus 765 ~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 841 (899)
T TIGR02917 765 T--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD 841 (899)
T ss_pred h--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence 3 2335666677777777777777777777766 2 23356667777777777777 6677777777777777777777
Q ss_pred hhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 538 LLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
.++.++...|++++|.++++++.+.+.
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777777777777777776554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.4e-37 Score=331.90 Aligned_cols=539 Identities=13% Similarity=0.087 Sum_probs=415.9
Q ss_pred hhhhhcCCCHHHHHHHhccCCC---CchhHHHHHHHHHHHcCCCCChHHHHHHHhhCCC---CCcchHHHHHHHHHccCC
Q 036340 2 ISGYVKRREMAKARKLFDEMPQ---RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE---RDCVTWNTVISGYAKTGE 75 (579)
Q Consensus 2 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 75 (579)
...+.+.|++++|...++.+.. .++..+..+...+...|+ +++|...|+++.+ .+...+..+...+...|+
T Consensus 336 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD---FEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 3467788888888888888765 345677777888887777 8888888887762 344567777778888888
Q ss_pred HHHHHHHhhcCCC---CchhhHHHHHHHHHhcCChhhHHHHHccCCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHhc
Q 036340 76 MEEALRLFNSMPA---RNVVSWNAMISGFLQNGDVANAIEFFDRMPG---RDSASLSALVSGLIQNGELDEAARVLVKCG 149 (579)
Q Consensus 76 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 149 (579)
+++|+..++.+.. .+......++..+.+.|++++|.++++.+.. .++.++..++..+...|++++|.+.|+++.
T Consensus 413 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred hHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8888888887762 2344566677788888888888888887754 355677778888888888888888888887
Q ss_pred cCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036340 150 SRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229 (579)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 229 (579)
+ ..|.+...+..++..+...|++++|.+.++++.. . .+.+..++..++..+.+.|+.++|...++++.
T Consensus 493 ~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 493 S---IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT--------I-DPKNLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred h---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------h-CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7 4455666777888888888888888888888862 1 14467778888888888888888888888875
Q ss_pred CC---ChhHHHHHHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHH
Q 036340 230 ER---DTFSWNTMISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ---KNLVSWNS 300 (579)
Q Consensus 230 ~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 300 (579)
+. +...+..++..+...|++++|..+++.+. +.+..++..++.++...|++++|...|+++.+ .++..+..
T Consensus 561 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 640 (899)
T TIGR02917 561 ELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL 640 (899)
T ss_pred HhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 43 44567777888888888888888888876 45667788888888888888888888887754 34556777
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCH
Q 036340 301 MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAI 380 (579)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 380 (579)
++.++...|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++......+++...+..++..+...|++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH
Confidence 8888888888888888888887643 234667777777888888888888888886666677777888888888888888
Q ss_pred HHHHHHHHhcc-CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHH
Q 036340 381 VEARIIFEEMK-LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459 (579)
Q Consensus 381 ~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 459 (579)
++|.+.|+.+. ..|+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.++|+++++
T Consensus 720 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 720 PAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88888888764 45666677778888888888888888888887642 33455777788888888888888888888875
Q ss_pred hhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCch
Q 036340 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537 (579)
Q Consensus 460 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 537 (579)
. .++++..+..++..+...|+ .+|+.+++++ ...| ++..+..++.++...|++++|...++++++..|.++.++.
T Consensus 799 ~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 875 (899)
T TIGR02917 799 K--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY 875 (899)
T ss_pred h--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 3 24466777888888888888 7788888876 3333 5566777778888888888888888888888888888888
Q ss_pred hhhhhhhhcCCchHHHHHHHHHH
Q 036340 538 LLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
.++.++...|++++|.+++++|+
T Consensus 876 ~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 876 HLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888888888888888875
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.6e-28 Score=263.76 Aligned_cols=536 Identities=14% Similarity=0.066 Sum_probs=406.6
Q ss_pred hhhhhcCCCHHHHHHHhccCCC--Cch-hHH----------------HHHHHHHHHcCCCCChHHHHHHHhhCCCCCcch
Q 036340 2 ISGYVKRREMAKARKLFDEMPQ--RDV-VSW----------------NVMISGYISSRGSGFLEEARYLFDIMPERDCVT 62 (579)
Q Consensus 2 ~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~----------------~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 62 (579)
+..+.+.|+.++|.+.+++..+ |+. ... ..+...+...|+ +++|++.|+++.+.++..
T Consensus 69 ~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~---~~eA~~~~~~~l~~~p~~ 145 (1157)
T PRK11447 69 FRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGR---TEEALASYDKLFNGAPPE 145 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC---HHHHHHHHHHHccCCCCC
Confidence 4567889999999999999876 332 211 223345566666 999999999988433222
Q ss_pred HH----HHHHHHHccCCHHHHHHHhhcCC---CCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCc-------------
Q 036340 63 WN----TVISGYAKTGEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS------------- 122 (579)
Q Consensus 63 ~~----~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------------- 122 (579)
.. .........|+.++|+..|+++. +.++..+..+...+...|+.++|++.++++.....
T Consensus 146 ~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l 225 (1157)
T PRK11447 146 LDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI 225 (1157)
T ss_pred hHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 11 11122234589999999999887 34556778888889999999999998887632100
Q ss_pred -------c---hH----------------------------------HHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCc
Q 036340 123 -------A---SL----------------------------------SALVSGLIQNGELDEAARVLVKCGSRCDGGEDL 158 (579)
Q Consensus 123 -------~---~~----------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 158 (579)
. .+ ......+...|++++|+..|+++++ ..|.+
T Consensus 226 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~---~~P~~ 302 (1157)
T PRK11447 226 KDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR---ANPKD 302 (1157)
T ss_pred hccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCC
Confidence 0 00 0113446678999999999999998 45677
Q ss_pred hhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHH------------HHHHHHHHhcCCHHHHHHHHH
Q 036340 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW------------NSMIMCYAKAGDVVSAREIFE 226 (579)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~A~~~~~ 226 (579)
..++..++.++.+.|++++|+..|+++....+. .+....| ......+.+.|++++|...|+
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-------~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPH-------SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 889999999999999999999999998732110 1111111 223556789999999999999
Q ss_pred hcCCC---ChhHHHHHHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHccCCCCC------
Q 036340 227 QMLER---DTFSWNTMISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN------ 294 (579)
Q Consensus 227 ~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 294 (579)
++++. +...+..+...+...|++++|++.|+++. +.+...+..+...+. .++.++|..+++.+....
T Consensus 376 ~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 376 QARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHH
Confidence 99763 55678888999999999999999999988 444566777777774 467899999998775421
Q ss_pred ------hhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHH
Q 036340 295 ------LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINN 368 (579)
Q Consensus 295 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 368 (579)
...+..+...+...|++++|+..|++.++.... +...+..+...+...|+++.|...++......+.++..+.
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~ 533 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVY 533 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 123555677888999999999999999876432 4556677888899999999999999996566666777777
Q ss_pred HHHHHhhhcCCHHHHHHHHHhccCC---CCe---------eeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHH
Q 036340 369 ALITMYARCGAIVEARIIFEEMKLL---KNV---------VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436 (579)
Q Consensus 369 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 436 (579)
.+...+...++.++|...++.+... ++. ..+..+...+...|+.++|+.+++. .+++...+..
T Consensus 534 a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~ 608 (1157)
T PRK11447 534 AYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLT 608 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHH
Confidence 7777788899999999999987511 111 1123456678889999999999872 2344557778
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC
Q 036340 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHN 513 (579)
Q Consensus 437 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~ 513 (579)
+...+.+.|++++|+..|+++++. .| +...+..++.+|...|++++|++.++.. ...| +...+..+..++...|
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 888999999999999999999864 44 6788899999999999999999999987 3444 5566777888889999
Q ss_pred CHHHHHHHHHHHhhcCCCCCC------CchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 514 NVELAQVAAEALMKVEPENST------PYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 514 ~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
++++|...+++++...|+++. .+..++.++...|++++|...+++..
T Consensus 686 ~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999998776553 45667899999999999999999885
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=8.4e-29 Score=265.88 Aligned_cols=544 Identities=12% Similarity=0.073 Sum_probs=378.9
Q ss_pred hhhhcCCCHHHHHHHhccCCC---CchhHHHHHHHHHHHcCCCCChHHHHHHHhhCCC--CCcchH--------------
Q 036340 3 SGYVKRREMAKARKLFDEMPQ---RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--RDCVTW-------------- 63 (579)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-------------- 63 (579)
......++.+.|.+.++++.. .++..+..++..+...|+ .++|.+.++++.+ |+...+
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~---~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGD---SDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCch
Confidence 445678899999999999875 467788888888888888 9999999999873 332221
Q ss_pred ---HHHHHHHHccCCHHHHHHHhhcCCC---Cchh-hHHHHHHHHHhcCChhhHHHHHccCCCC---CcchHHHHHHHHH
Q 036340 64 ---NTVISGYAKTGEMEEALRLFNSMPA---RNVV-SWNAMISGFLQNGDVANAIEFFDRMPGR---DSASLSALVSGLI 133 (579)
Q Consensus 64 ---~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 133 (579)
..+...+.+.|++++|++.|+.+.+ ++.. ....+.......|+.++|++.++++... +...+..+...+.
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLF 192 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 2334467889999999999999873 2221 1111222233469999999999998763 4457778889999
Q ss_pred hCCCHHHHHHHHHHhccCCCCC----------------C-CchhhHH---------------------------------
Q 036340 134 QNGELDEAARVLVKCGSRCDGG----------------E-DLVRAYN--------------------------------- 163 (579)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~----------------~-~~~~~~~--------------------------------- 163 (579)
..|+.++|+..++++....... . .....+.
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 9999999999999876531100 0 0000010
Q ss_pred -HHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----hHH-
Q 036340 164 -TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT-----FSW- 236 (579)
Q Consensus 164 -~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~- 236 (579)
..+..+...|++++|+..|+++... -+.+..++..+..++.+.|++++|+..|++.++.++ ..|
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~---------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRA---------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 1234455667777777777777621 133566777777777777777777777777654221 111
Q ss_pred -----------HHHHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHH
Q 036340 237 -----------NTMISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ---KNLVSWN 299 (579)
Q Consensus 237 -----------~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 299 (579)
......+.+.|++++|+..|+++. +.+...+..+..++...|++++|++.|+++.+ .+...+.
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 112345566777777777777776 33455666677777777777777777777664 2333455
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCC--------CChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHH
Q 036340 300 SMIAGCETNKDYEGAIKLFIQMQVEGEK--------PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALI 371 (579)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 371 (579)
.+...+. .+++++|+..++.+...... .....+......+...|+++.|...++......|.++.++..+.
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA 502 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLA 502 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5555553 34667777776654322100 00112334445666788888888888886666677777888888
Q ss_pred HHhhhcCCHHHHHHHHHhcc-CCC-CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh---------hHHHHHHH
Q 036340 372 TMYARCGAIVEARIIFEEMK-LLK-NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI---------TFISVLSA 440 (579)
Q Consensus 372 ~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~---------~~~~l~~~ 440 (579)
..|.+.|++++|...++++. ..| +...+..+...+...++.++|+..++.+......++.. .+..+...
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 88888888888888888764 233 44445555555667788888888888765433222221 12334556
Q ss_pred hcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH
Q 036340 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELA 518 (579)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A 518 (579)
+...|++++|..+++. .+++...+..++..+.+.|++++|+..++++ ...| +...+..++..+...|++++|
T Consensus 583 l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 7788999999888761 2446667788999999999999999999988 4445 678899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCC
Q 036340 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565 (579)
Q Consensus 519 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (579)
+..++++.+..|+++.++..++.++...|++++|.++++++......
T Consensus 657 ~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 657 RAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 99999999999999998999999999999999999999999876543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=4.3e-25 Score=226.31 Aligned_cols=529 Identities=10% Similarity=0.020 Sum_probs=381.9
Q ss_pred hhcCCCHHHHHHHhccCCC--C-chhHHHHHHHHHHHcCCCCChHHHHHHHhhCCCCCc--chHHHHHHHHHccCCHHHH
Q 036340 5 YVKRREMAKARKLFDEMPQ--R-DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDC--VTWNTVISGYAKTGEMEEA 79 (579)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A 79 (579)
+...|++++|+..|+.+.+ | ++..+..+...+...|+ +++|+..+++..+.++ ..|..++..+ +++.+|
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~---~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA 127 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGH---DDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKS 127 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhH
Confidence 3456999999999999986 3 46778889999999988 9999999999984333 3333333222 999999
Q ss_pred HHHhhcCC---CCchhhHHHHHHH--------HHhcCChhhHHHHHccCCCCC--cchHHH-HHHHHHhCCCHHHHHHHH
Q 036340 80 LRLFNSMP---ARNVVSWNAMISG--------FLQNGDVANAIEFFDRMPGRD--SASLSA-LVSGLIQNGELDEAARVL 145 (579)
Q Consensus 80 ~~~~~~~~---~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~--~~~~~~-l~~~~~~~g~~~~A~~~~ 145 (579)
...++++. +.+..++..+... |.+.+...++++ .+...++ +.+... +...|.+.|++++|++.+
T Consensus 128 ~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 128 VTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99999997 3445566666665 777777777776 3333343 444444 488999999999999999
Q ss_pred HHhccCCCCCCCchhhHHHHHHHHhh-CCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHH
Q 036340 146 VKCGSRCDGGEDLVRAYNTLIVGYGQ-RGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224 (579)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 224 (579)
.++.+. .+.+......+..+|.. .++ +++..+++... +.+...+..++..+.+.|+.++|.++
T Consensus 206 ~~L~k~---~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l------------k~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 206 NEARQQ---NTLSAAERRQWFDVLLAGQLD-DRLLALQSQGI------------FTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc------------ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999994 45556667788888887 477 88888865432 46788899999999999999999999
Q ss_pred HHhcCC-----CChhH------------------------------HHHHHHHHHhcCChHHHHHHhhcCC---------
Q 036340 225 FEQMLE-----RDTFS------------------------------WNTMISGYIHVLDMEEASNLFVKMP--------- 260 (579)
Q Consensus 225 ~~~~~~-----~~~~~------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~--------- 260 (579)
++++.. ++..+ ...++..+.+.++++-+.++...-.
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 349 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERY 349 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHH
Confidence 998732 11111 1122455666777776665533111
Q ss_pred -----------------------CCChhhHHHHHHHHHhcCCHHHHHHHHccCCC--C----ChhhHHHHHHHHHhCCC-
Q 036340 261 -----------------------HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ--K----NLVSWNSMIAGCETNKD- 310 (579)
Q Consensus 261 -----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~- 310 (579)
+.+....-.+.-...+.|+.++|.++|+.... + +.....-++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence 01222233334445678899999999988765 1 22234466777777655
Q ss_pred --chHHHHH----------------------HHHHHH-cCCCC---ChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCC
Q 036340 311 --YEGAIKL----------------------FIQMQV-EGEKP---DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP 362 (579)
Q Consensus 311 --~~~a~~~----------------------~~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 362 (579)
..++..+ +..... .+..| +...+..+..++.. ++.+.|...+....... |
T Consensus 430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-P 507 (987)
T PRK09782 430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-P 507 (987)
T ss_pred cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-C
Confidence 3333333 111111 11222 34455555555555 77878888777633333 3
Q ss_pred CchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh-hHHHHHHH
Q 036340 363 DVPINNALITMYARCGAIVEARIIFEEMK-LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI-TFISVLSA 440 (579)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~ 440 (579)
+......+...+...|++++|...|+++. .+|+...+..+..++.+.|++++|...+++..+.. |+.. .+..+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHH
Confidence 43444445566678999999999999875 34555567777888899999999999999998653 5443 34444445
Q ss_pred hcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH
Q 036340 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELA 518 (579)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A 518 (579)
+...|++++|...+++.++ ..|+...+..++.++.+.|++++|+..+++. ...| +...+..+..++...|++++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5567999999999999984 4677888999999999999999999999988 4556 566888888899999999999
Q ss_pred HHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 519 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
+..++++++..|+++.++..++.++...|++++|+..+++..+...
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999986653
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=3.6e-26 Score=208.06 Aligned_cols=376 Identities=15% Similarity=0.217 Sum_probs=262.1
Q ss_pred hhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCc-chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH-
Q 036340 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR-NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSW- 236 (579)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~- 236 (579)
..+|..+.+.+-..|+++.|+.+++.++ .+.| .+..|..+..++...|+.+.|...|.+.++-++..+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~ai----------el~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c 185 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAI----------ELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC 185 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHH----------hcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh
Confidence 3344444444444444444444444443 1122 234444444444444444444444444433322211
Q ss_pred --HHHHHHHHhcCChHHHHHHhhcCC--CCC-hhhHHHHHHHHHhcCCHHHHHHHHccCCCCCh---hhHHHHHHHHHhC
Q 036340 237 --NTMISGYIHVLDMEEASNLFVKMP--HPD-TLTWNAMVSGYAQIGNLELALDFFKRMPQKNL---VSWNSMIAGCETN 308 (579)
Q Consensus 237 --~~l~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~ 308 (579)
..+...+...|..++|...|.+.. .|. ...|+.|...+...|+...|+..|++..+-|+ ..|-.|...|...
T Consensus 186 a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 186 ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEA 265 (966)
T ss_pred hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHH
Confidence 122233333444444444444443 222 34566666666667777777777766665332 3566666677777
Q ss_pred CCchHHHHHHHHHHHcCCCCC-hhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHH
Q 036340 309 KDYEGAIKLFIQMQVEGEKPD-RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIF 387 (579)
Q Consensus 309 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 387 (579)
+.+++|+..|.+.... +|+ ...+..+...|..+|..+.|+..++......|.-+..|+.+..++...|+..+|+..|
T Consensus 266 ~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred hcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 7777777777666543 333 3455555566677777777777777755555666778899999999999999999999
Q ss_pred Hhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCC
Q 036340 388 EEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464 (579)
Q Consensus 388 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 464 (579)
.+.. ......+.+.|...|...|.+++|..+|....+ +.|... ..+.|...|-++|++++|+..|++.+ .+.
T Consensus 344 nkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~ 418 (966)
T KOG4626|consen 344 NKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIK 418 (966)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcC
Confidence 9864 334566789999999999999999999999884 677755 88999999999999999999999987 678
Q ss_pred CC-cchhHHHHHHhhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhh
Q 036340 465 PR-IEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPD-KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541 (579)
Q Consensus 465 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 541 (579)
|+ ...+..++..|-..|+.+.|++.+.+. .+.|. ...++.+...+...|+..+|+..|+.++++.|+.+.++..++.
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 86 578999999999999999999999887 66674 5688999999999999999999999999999999999999988
Q ss_pred hhhhcCCchH
Q 036340 542 MYADVGRWDD 551 (579)
Q Consensus 542 ~~~~~g~~~~ 551 (579)
++.-..+|.+
T Consensus 499 ~lq~vcdw~D 508 (966)
T KOG4626|consen 499 CLQIVCDWTD 508 (966)
T ss_pred HHHHHhcccc
Confidence 7766666554
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=3e-23 Score=212.90 Aligned_cols=543 Identities=10% Similarity=0.029 Sum_probs=389.9
Q ss_pred ChhhhhcCCCHHHHHHHhccCCCCch--hHHHHHHHHHHHcCCCCChHHHHHHHhhCC---CCCcchHHHHHHH------
Q 036340 1 MISGYVKRREMAKARKLFDEMPQRDV--VSWNVMISGYISSRGSGFLEEARYLFDIMP---ERDCVTWNTVISG------ 69 (579)
Q Consensus 1 l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~------ 69 (579)
|+..|.+.|++++|+..++++.+.++ ..+..++..+ ++ +++|...++++. +.+..++..+...
T Consensus 84 LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~---~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~ 157 (987)
T PRK09782 84 LAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PV---EVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNA 157 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---cc---ChhHHHHHHHHHHhCCCChhHHHHHHHHhhccch
Confidence 46789999999999999999987433 3444433222 55 899999999998 3455667666666
Q ss_pred --HHccCCHHHHHHHhhcCCCCc--hhhHHHH-HHHHHhcCChhhHHHHHccCCCCC---cchHHHHHHHHHh-CCCHHH
Q 036340 70 --YAKTGEMEEALRLFNSMPARN--VVSWNAM-ISGFLQNGDVANAIEFFDRMPGRD---SASLSALVSGLIQ-NGELDE 140 (579)
Q Consensus 70 --~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~-~g~~~~ 140 (579)
|.+.+...+++. .+...|+ +.+.... ...|.+.|++++|++.+.++.+.. ......+..+|.. .++ ++
T Consensus 158 l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~ 234 (987)
T PRK09782 158 LRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DR 234 (987)
T ss_pred hhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HH
Confidence 777766666666 3333343 4444444 899999999999999999987643 3345566677777 466 77
Q ss_pred HHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCC-------------C-----ccC----
Q 036340 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEG-------------N-----VRF---- 198 (579)
Q Consensus 141 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~-----~~~---- 198 (579)
+..+++. ....+...+..++..+.+.|+.++|.++++++........+ . ..+
T Consensus 235 a~al~~~------~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~ 308 (987)
T PRK09782 235 LLALQSQ------GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQF 308 (987)
T ss_pred HHHHhch------hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhh
Confidence 7777443 33367778999999999999999999999998633221000 0 000
Q ss_pred Ccc-hHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------------------------C-ChhHHHHHHHHHHh
Q 036340 199 KRN-IVSWNSMIMCYAKAGDVVSAREIFEQMLE-------------------------------R-DTFSWNTMISGYIH 245 (579)
Q Consensus 199 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------------------------~-~~~~~~~l~~~~~~ 245 (579)
.++ ......++..+.+.++++.++++...-.. + +......+.-...+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~ 388 (987)
T PRK09782 309 ADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQ 388 (987)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 000 01112235666777777777666331100 0 22223333445567
Q ss_pred cCChHHHHHHhhcCCC--C----ChhhHHHHHHHHHhcCC---HHHHHHHHc-------------------------cCC
Q 036340 246 VLDMEEASNLFVKMPH--P----DTLTWNAMVSGYAQIGN---LELALDFFK-------------------------RMP 291 (579)
Q Consensus 246 ~~~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~---~~~A~~~~~-------------------------~~~ 291 (579)
.|+.++|..+|+...+ . +.....-++..|.+.+. ..++..+-. ...
T Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 389 NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 8999999999998872 2 22344467777777766 333433311 111
Q ss_pred C---C--ChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchH
Q 036340 292 Q---K--NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPI 366 (579)
Q Consensus 292 ~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 366 (579)
. + +...|..+..++.. +++++|+..+.+.... .|+......+...+...|+++.|...++..... +|+...
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-~p~~~a 544 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-DMSNED 544 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCcHH
Confidence 1 2 45577888887776 8999999988887765 366555444455567899999999999985433 444555
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhcc-CCCCe-eeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhccc
Q 036340 367 NNALITMYARCGAIVEARIIFEEMK-LLKNV-VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444 (579)
Q Consensus 367 ~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 444 (579)
+..+...+.+.|++++|...+++.. ..|+. ..+..+.......|++++|+..+++..+ ..|+...+..+..++.+.
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHC
Confidence 6677888999999999999999875 22322 2222333344456999999999999995 467777899999999999
Q ss_pred CcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHH
Q 036340 445 GLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVA 521 (579)
Q Consensus 445 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 521 (579)
|++++|+..+++.+. ..| +...+..++.++...|++++|+..+++. ...| ++..+..+..++...|++++|+..
T Consensus 623 G~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 623 HNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999985 355 5678889999999999999999999987 4455 677899999999999999999999
Q ss_pred HHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCCC
Q 036340 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567 (579)
Q Consensus 522 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 567 (579)
+++++++.|++..+....+++.....+++.|.+.+++.-..++...
T Consensus 700 l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 700 ARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 9999999999999999999999999999999999988765555433
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.7e-24 Score=206.11 Aligned_cols=542 Identities=15% Similarity=0.114 Sum_probs=396.4
Q ss_pred hhhcCCCHHHHHHHhccCCCCc----hhHHHHHHHHHHHcCCCCChHHHHHHHhhCCCCCcchHHHHHHHHH------cc
Q 036340 4 GYVKRREMAKARKLFDEMPQRD----VVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYA------KT 73 (579)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~------~~ 73 (579)
.....|+|..|+.+|..++..+ +....++..++.+.++ .+.|+..|....+.||...++++.... ..
T Consensus 173 i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~---~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~ 249 (1018)
T KOG2002|consen 173 IAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGM---SEKALLAFERALQLDPTCVSALVALGEVDLNFNDS 249 (1018)
T ss_pred HHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccc---hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccch
Confidence 4456788888888888865421 1223344566677777 888888888888777765555554322 22
Q ss_pred CCHHHHHHHhhcCC---CCchhhHHHHHHHHHhcCChhhHHHHHccCCCC------CcchHHHHHHHHHhCCCHHHHHHH
Q 036340 74 GEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR------DSASLSALVSGLIQNGELDEAARV 144 (579)
Q Consensus 74 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~ 144 (579)
..+..+.+++.+.- ..||.+.+.|.+.|.-.|++..+..+...+... -..+|..+.+++..+|++++|...
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 45566666666654 567888888999999999999998888877543 234678889999999999999999
Q ss_pred HHHhccCCCCCCCc-hhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcC----CHH
Q 036340 145 LVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG----DVV 219 (579)
Q Consensus 145 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~ 219 (579)
|.+..+. .+.+ ...+.-+++.+.+.|+++.+...|+.+.. ..+.+..+...|...|...+ ..+
T Consensus 330 Y~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k---------~~p~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 330 YMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK---------QLPNNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred HHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHHHH---------hCcchHHHHHHHHhHHHhhhhhhHHHH
Confidence 9888874 2222 55677788999999999999999998862 22555677777777777665 456
Q ss_pred HHHHHHHhcCCC---ChhHHHHHHHHHHhcCC------hHHHHHHhhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHcc
Q 036340 220 SAREIFEQMLER---DTFSWNTMISGYIHVLD------MEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKR 289 (579)
Q Consensus 220 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (579)
.|..++.+..++ |...|-.+...+....- +..|..++..-. .+.+...|.+...+...|++.+|...|+.
T Consensus 398 ~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 398 KASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 777777777664 55667777666655433 333443333222 56677889999999999999999999887
Q ss_pred CCC-------CCh------hhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC-hhhHHHHHHhccCCCchhhHHHHHHH
Q 036340 290 MPQ-------KNL------VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD-RHTFSSILSMSSGIVDLHLGMQIHQM 355 (579)
Q Consensus 290 ~~~-------~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 355 (579)
... ++. .+-..+..++-..++++.|.+.|..+.+.. |+ ...|..+.......++...|..+++.
T Consensus 478 A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 478 ALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKD 555 (1018)
T ss_pred HhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHH
Confidence 653 122 123345666677789999999999988752 33 23344444344456777888888888
Q ss_pred HhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc----CCCCeeeHHHHHHHHHh------------cCChHHHHHHH
Q 036340 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK----LLKNVVSWNAMIGGCAS------------HGFATEALELF 419 (579)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~------------~~~~~~A~~~~ 419 (579)
.......++.++..+...+.....+..|.+-|..+. ..+|..+...|++.|.+ .+..++|+++|
T Consensus 556 ~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y 635 (1018)
T KOG2002|consen 556 ALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLY 635 (1018)
T ss_pred HHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 888888888888889989999888888888655543 34566666667776543 24577899999
Q ss_pred HHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC----CC
Q 036340 420 KSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM----PF 495 (579)
Q Consensus 420 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 495 (579)
.+.+... +-|...-+.+.-+++..|++..|..+|.++... ......+|..++.+|..+|++..|+++|+.. ..
T Consensus 636 ~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~ 712 (1018)
T KOG2002|consen 636 GKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK 712 (1018)
T ss_pred HHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9988642 335567788888899999999999999998764 3456778999999999999999999999876 23
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhc-------------------CCchHHHHHH
Q 036340 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV-------------------GRWDDANEVR 556 (579)
Q Consensus 496 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~ 556 (579)
..++.+.+.|.+++...|.+.+|...+..++...|.++.....++.+..+. +..+.|.++|
T Consensus 713 ~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F 792 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLF 792 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999998877777666544 3466788888
Q ss_pred HHHHhCCCC
Q 036340 557 LLMKSNNIK 565 (579)
Q Consensus 557 ~~~~~~~~~ 565 (579)
.+|.+.+-+
T Consensus 793 ~~ls~~~d~ 801 (1018)
T KOG2002|consen 793 TELSKNGDK 801 (1018)
T ss_pred HHHHhcCCC
Confidence 888766654
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=2e-24 Score=196.78 Aligned_cols=422 Identities=13% Similarity=0.133 Sum_probs=351.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHH
Q 036340 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204 (579)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (579)
...+..-..+.|++.+|++.-...-.+ .+.+....-.+...+.+..+.+.....-.... ...+.-..+
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~---d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~---------r~~~q~ae~ 118 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE---DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAI---------RKNPQGAEA 118 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc---CCCcccceeeehhhhhcccchhhhhhhhhhhh---------hccchHHHH
Confidence 455667778899999999988877664 33333344445556666667776655444443 112445788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChh---hHHHHHHHHHhcC
Q 036340 205 WNSMIMCYAKAGDVVSAREIFEQMLER---DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL---TWNAMVSGYAQIG 278 (579)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g 278 (579)
|..+.+.+-..|+++.|++.|+.+++. ....|..+..++...|+.+.|...|....+.|+. ..+.+...+...|
T Consensus 119 ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhc
Confidence 999999999999999999999999774 4578999999999999999999999988844443 3345667777889
Q ss_pred CHHHHHHHHccCCC--CC-hhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC-hhhHHHHHHhccCCCchhhHHHHHH
Q 036340 279 NLELALDFFKRMPQ--KN-LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD-RHTFSSILSMSSGIVDLHLGMQIHQ 354 (579)
Q Consensus 279 ~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 354 (579)
++.+|...|.+..+ |. ...|..|...+..+|+...|+..|++..+. .|+ ...|..+...+...+.++.|...+.
T Consensus 199 rl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred ccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence 99999999988775 33 358999999999999999999999999864 444 4567777888888888999999888
Q ss_pred HHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCC-eeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh
Q 036340 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLKN-VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432 (579)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 432 (579)
.....-+....++..+...|...|.++-|+..|++.. ..|+ +..|+.|..++...|++.+|++.+.+... +.|+..
T Consensus 277 rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~ha 354 (966)
T KOG4626|consen 277 RALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHA 354 (966)
T ss_pred HHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccH
Confidence 8666677778888899999999999999999999874 5565 56899999999999999999999999985 567655
Q ss_pred -hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHhhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 036340 433 -TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR-IEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPD-KAVWGALLGA 508 (579)
Q Consensus 433 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~ 508 (579)
+.+.|...+...|.++.|..+|.... .+.|. ....+.|+..|-.+|++++|+..+++. .++|. ...++.+...
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence 88999999999999999999999887 45664 567899999999999999999999988 78886 4589999999
Q ss_pred HhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCC
Q 036340 509 CRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565 (579)
Q Consensus 509 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (579)
|-..|+...|++.|.+++..+|.-..++..|+.+|...|+..+|..-+++..+..+.
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999999999998866654
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.6e-23 Score=197.74 Aligned_cols=539 Identities=14% Similarity=0.102 Sum_probs=396.1
Q ss_pred HHHHHHHhccCCCCchhH-HHHHHHHHHHcCCCCChHHHHHHHhhCC------CCCcchHHHHHHHHHccCCHHHHHHHh
Q 036340 11 MAKARKLFDEMPQRDVVS-WNVMISGYISSRGSGFLEEARYLFDIMP------ERDCVTWNTVISGYAKTGEMEEALRLF 83 (579)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (579)
++.|...|...++.++.. ...+..++..-++ +++..|+.+|.... .+|+.+ .+..++.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynk-kdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNK-KDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhcc-ccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 588899998888754433 2334444444443 66999999999865 344433 3446677899999999999
Q ss_pred hcCCCCchh---hHHHHHHHHHhcC---ChhhHHHHHccCC---CCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCC
Q 036340 84 NSMPARNVV---SWNAMISGFLQNG---DVANAIEFFDRMP---GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154 (579)
Q Consensus 84 ~~~~~~~~~---~~~~l~~~~~~~~---~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 154 (579)
++..+-|+. ++..|.-.-.... .+..+..++...- ..++...+.|...+...|++..+..+...+......
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 988854443 3333333223333 3455666665543 358889999999999999999999999998875322
Q ss_pred CCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcch--HHHHHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 036340 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI--VSWNSMIMCYAKAGDVVSAREIFEQMLER- 231 (579)
Q Consensus 155 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 231 (579)
.+.-...|..++.+|...|++++|..+|-+... ..|+. ..+.-+...+.+.|+++.+...|+.+.+.
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k----------~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK----------ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL 372 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----------cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence 333455689999999999999999999998872 23433 34556788999999999999999998663
Q ss_pred --ChhHHHHHHHHHHhcC----ChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHccCC--------CCC
Q 036340 232 --DTFSWNTMISGYIHVL----DMEEASNLFVKMP---HPDTLTWNAMVSGYAQIGNLELALDFFKRMP--------QKN 294 (579)
Q Consensus 232 --~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~ 294 (579)
+..+...+...|...+ ..+.|..++.+.. +.|...|..+...+-.. +...++..|..+. ...
T Consensus 373 p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip 451 (1018)
T KOG2002|consen 373 PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIP 451 (1018)
T ss_pred cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCC
Confidence 4455666666666664 5678888888777 45666777777666543 3333354444332 356
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHc---CCCCCh------hhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCch
Q 036340 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVE---GEKPDR------HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP 365 (579)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 365 (579)
+...|.+...+...|+++.|...|...... ...++. .+--.+....-..++.+.|.+.+..+.+..|.-+.
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId 531 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYID 531 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHH
Confidence 778899999999999999999999987654 222333 23334555666778999999999998888888788
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCC-CCCChhhHHHHHHHhc
Q 036340 366 INNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK-VLPTYITFISVLSACA 442 (579)
Q Consensus 366 ~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~ 442 (579)
.|..++.+....++..+|...+.... ...++..+..++..+.....+..|.+-|....+.- ..+|..+...|...|.
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 88777766666788899999998875 45677778888888888888888888666665432 2356666666666553
Q ss_pred c------------cCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 036340 443 H------------AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP--FEPDKAVWGALLGA 508 (579)
Q Consensus 443 ~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 508 (579)
. .+..++|+++|.++++. .+-+...-+.++-+++..|++.+|..+|.++. ......+|.+++.+
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHC 689 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHH
Confidence 2 34577889999888752 23377788889999999999999999999983 33466789999999
Q ss_pred HhhcCCHHHHHHHHHHHhhcC--CCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCC
Q 036340 509 CRVHNNVELAQVAAEALMKVE--PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565 (579)
Q Consensus 509 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (579)
|...|++..|+++|+...+.. .+++.++..|+.++.+.|.+.+|.+.+.......+.
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 999999999999999998643 556778999999999999999999999887765543
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=5.7e-22 Score=200.44 Aligned_cols=419 Identities=9% Similarity=-0.008 Sum_probs=261.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHH
Q 036340 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204 (579)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (579)
+......+.+.|++++|+..|++++.. .|+...|..+..+|.+.|++++|++.++.++.. . +.+...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~----~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--------~-p~~~~a 196 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC----KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--------D-PDYSKA 196 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------C-CCCHHH
Confidence 444556666677777777777776653 223456666667777777777777777766511 1 224556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH
Q 036340 205 WNSMIMCYAKAGDVVSAREIFEQMLERD---TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLE 281 (579)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 281 (579)
+..+..++...|++++|+..|..+...+ ......++..+........+...++.- +++...+..+...+ ......
T Consensus 197 ~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~ 274 (615)
T TIGR00990 197 LNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPK 274 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCC
Confidence 6666777777777777766665443211 111111111111111112222222221 12222222222211 111111
Q ss_pred HHHHHHccCCCCCh---hhHHHHHHHH---HhCCCchHHHHHHHHHHHcC-CCC-ChhhHHHHHHhccCCCchhhHHHHH
Q 036340 282 LALDFFKRMPQKNL---VSWNSMIAGC---ETNKDYEGAIKLFIQMQVEG-EKP-DRHTFSSILSMSSGIVDLHLGMQIH 353 (579)
Q Consensus 282 ~A~~~~~~~~~~~~---~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 353 (579)
....-+....+.+. ..+..+...+ ...+++++|...|++..+.+ ..| ....+..+...+...|+++.|...+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 11111111111111 1111111111 23467788888888877654 223 2344555566667788888888888
Q ss_pred HHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-
Q 036340 354 QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT- 430 (579)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~- 430 (579)
+......+.....+..+...+...|++++|...|++.. .+.+...|..++..+...|++++|+..|++..+. .|+
T Consensus 355 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~ 432 (615)
T TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDF 432 (615)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccC
Confidence 87555555666778888888888999999999988764 2335677888888899999999999999998853 565
Q ss_pred hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCCCH-H-------H
Q 036340 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPDK-A-------V 501 (579)
Q Consensus 431 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~-------~ 501 (579)
...+..+..++...|++++|+..+++.++. .+.+...+..++.++...|++++|+..|++. ...|+. . .
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 447777888888999999999999988753 2335678888899999999999999998886 333321 1 1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhC
Q 036340 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562 (579)
Q Consensus 502 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (579)
++.....+...|++++|+..++++++++|++..++..++.++.+.|++++|.+.+++..+.
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1122222334689999999999999999998888899999999999999999999987654
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.6e-21 Score=187.77 Aligned_cols=297 Identities=12% Similarity=0.101 Sum_probs=202.2
Q ss_pred HHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC---hhhHHHHHHhccCCCchh
Q 036340 274 YAQIGNLELALDFFKRMPQ---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD---RHTFSSILSMSSGIVDLH 347 (579)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 347 (579)
+...|++++|...|.++.+ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3344444445554444443 1222344444445555555555555555444321111 123334444445555555
Q ss_pred hHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCCe------eeHHHHHHHHHhcCChHHHHHHHH
Q 036340 348 LGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLKNV------VSWNAMIGGCASHGFATEALELFK 420 (579)
Q Consensus 348 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~ 420 (579)
.|..+++......+.+..++..++..+...|++++|.+.++.+. ..|+. ..+..++..+.+.|++++|+..|+
T Consensus 125 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 55555555333334455566777888888888888888888774 12221 134567777888999999999999
Q ss_pred HhHhCCCCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC--cchhHHHHHHhhccCChHHHHHHHHhC-CCC
Q 036340 421 SMRSFKVLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR--IEHFASLVDIVGRHGRLEDAMDLIKGM-PFE 496 (579)
Q Consensus 421 ~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 496 (579)
++.+. .|+ ...+..+...+...|++++|.++++++... .|+ ..++..++.+|...|++++|...++++ ...
T Consensus 205 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 205 KALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99864 354 447777888999999999999999998754 333 456778889999999999999999987 456
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhh---cCCchHHHHHHHHHHhCCCCCCCcceee
Q 036340 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD---VGRWDDANEVRLLMKSNNIKKPTGYSWV 573 (579)
Q Consensus 497 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 573 (579)
|+...+..++..+.+.|++++|...++++++..|++.. +..+...+.. .|+.+++...++++.++++.+.|.+..
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c- 357 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRC- 357 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEEC-
Confidence 77777788889999999999999999999999999765 4444444432 568999999999999999999998654
Q ss_pred EeccCC
Q 036340 574 DFSPCG 579 (579)
Q Consensus 574 ~~~~~~ 579 (579)
.+||
T Consensus 358 --~~cg 361 (389)
T PRK11788 358 --RNCG 361 (389)
T ss_pred --CCCC
Confidence 5565
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=4.8e-20 Score=186.51 Aligned_cols=419 Identities=12% Similarity=0.012 Sum_probs=272.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHccCCC--CCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHh
Q 036340 93 SWNAMISGFLQNGDVANAIEFFDRMPG--RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG 170 (579)
Q Consensus 93 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (579)
.+...+..+.+.|++++|+..|++... |++..|..+..++...|++++|++.+..+++ ..|....++..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~---l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALE---LDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 345566777777888888777777653 4556677777778888888888888888777 45566677777888888
Q ss_pred hCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChH
Q 036340 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDME 250 (579)
Q Consensus 171 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 250 (579)
..|++++|+..|..+... .+ .+......++..+........+...++.-.. +...+..+.. +.......
T Consensus 206 ~lg~~~eA~~~~~~~~~~-------~~--~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~ 274 (615)
T TIGR00990 206 GLGKYADALLDLTASCII-------DG--FRNEQSAQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPK 274 (615)
T ss_pred HcCCHHHHHHHHHHHHHh-------CC--CccHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCC
Confidence 888888887777655311 01 1111111122211111112223333322111 1122222222 22211111
Q ss_pred HHHHHhhcCC--CCC-hhhHHHHHHHH---HhcCCHHHHHHHHccCCCC------ChhhHHHHHHHHHhCCCchHHHHHH
Q 036340 251 EASNLFVKMP--HPD-TLTWNAMVSGY---AQIGNLELALDFFKRMPQK------NLVSWNSMIAGCETNKDYEGAIKLF 318 (579)
Q Consensus 251 ~a~~~~~~~~--~~~-~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (579)
....-+.... .++ ...+..+...+ ...+++++|...|+...+. ....|+.+...+...|++++|+..|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1111122111 111 11111121111 2346788888888776642 2345777777788888888888888
Q ss_pred HHHHHcCCCCC-hhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCC-C
Q 036340 319 IQMQVEGEKPD-RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLK-N 395 (579)
Q Consensus 319 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~ 395 (579)
++.++. .|+ ...+..+...+...|+++.|...++......+.++.++..+...+...|++++|...|++.. ..| +
T Consensus 355 ~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 355 SKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 888764 333 44666677777788888888888888555566778888899999999999999999998874 334 4
Q ss_pred eeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCc-ch----
Q 036340 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI-EH---- 469 (579)
Q Consensus 396 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~---- 469 (579)
...+..+..++.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|+..|++.+.. .|+. ..
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~ 507 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNV 507 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccH
Confidence 566778888899999999999999998853 454 458888888999999999999999988743 3321 11
Q ss_pred ---hHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC
Q 036340 470 ---FASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 470 ---~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 532 (579)
+......+...|++++|..++++. ...| +...+..++..+...|++++|+..|+++.++.+..
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 111222334469999999999886 5555 44578888999999999999999999999887764
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=3.4e-19 Score=183.47 Aligned_cols=393 Identities=10% Similarity=0.023 Sum_probs=217.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHH
Q 036340 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205 (579)
Q Consensus 126 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (579)
.-.+......|+.++|++++.++.. ..+.....+..++..+...|++++|.++|+++... -+.+...+
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~---~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~---------~P~~~~a~ 86 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRV---HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL---------EPQNDDYQ 86 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHH
Confidence 3344445555555555555555543 12333334555555555555555555555554411 02234444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCC
Q 036340 206 NSMIMCYAKAGDVVSAREIFEQMLER---DTFSWNTMISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGYAQIGN 279 (579)
Q Consensus 206 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 279 (579)
..++.++...|++++|...++++++. +.. +..+..++...|+.++|+..++++. +.+...+..++.++...|.
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 45555555555555555555555331 223 4444455555555555555555554 2233444455556666666
Q ss_pred HHHHHHHHccCCCCChh--------hHHHHHHHHH-----hCCCc---hHHHHHHHHHHHc-CCCCChhh-HHHHHHhcc
Q 036340 280 LELALDFFKRMPQKNLV--------SWNSMIAGCE-----TNKDY---EGAIKLFIQMQVE-GEKPDRHT-FSSILSMSS 341 (579)
Q Consensus 280 ~~~A~~~~~~~~~~~~~--------~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~~-~~~l~~~~~ 341 (579)
.+.|+..++.+.. ++. ....++.... ..+++ ++|+..++.+.+. ...|+... +..
T Consensus 166 ~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~------ 238 (765)
T PRK10049 166 SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR------ 238 (765)
T ss_pred hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH------
Confidence 6666666665554 111 1111111111 11222 5566666666543 12222111 100
Q ss_pred CCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhccCC-CC-ee-eHHHHHHHHHhcCChHHHHHH
Q 036340 342 GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLL-KN-VV-SWNAMIGGCASHGFATEALEL 418 (579)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-~~-~~~~l~~~~~~~~~~~~A~~~ 418 (579)
.....+..+...|++++|+..|+.+... ++ +. ....+..+|...|++++|+..
T Consensus 239 ------------------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 239 ------------------------ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSI 294 (765)
T ss_pred ------------------------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 0001122334557777777777776521 11 11 112245667777777788777
Q ss_pred HHHhHhCCCCCCh-----hhHHHHHHHhcccCcHHHHHHHHHHhHHhhC----------CCCC---cchhHHHHHHhhcc
Q 036340 419 FKSMRSFKVLPTY-----ITFISVLSACAHAGLVEEGRQHFKSMVNEYG----------IEPR---IEHFASLVDIVGRH 480 (579)
Q Consensus 419 ~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~ 480 (579)
|+++... .|.. .....+..++...|++++|.+.++.+..... ..|+ ...+..++..+...
T Consensus 295 l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 295 LTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS 372 (765)
T ss_pred HHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence 7776643 2221 2344555566777788888777777764311 0112 12344566777788
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHH
Q 036340 481 GRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558 (579)
Q Consensus 481 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 558 (579)
|+.++|++.++++ ...| +...+..++..+...|++++|+..++++++.+|+++..+..++.++...|++++|..++++
T Consensus 373 g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888888888876 3333 5667777778888888888888888888888888888888888888888888888888888
Q ss_pred HHhCCC
Q 036340 559 MKSNNI 564 (579)
Q Consensus 559 ~~~~~~ 564 (579)
+.+..+
T Consensus 453 ll~~~P 458 (765)
T PRK10049 453 VVAREP 458 (765)
T ss_pred HHHhCC
Confidence 776543
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=2.6e-19 Score=180.26 Aligned_cols=341 Identities=11% Similarity=-0.006 Sum_probs=189.5
Q ss_pred HhcCChhhHHHHHccCCCC------CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCH
Q 036340 102 LQNGDVANAIEFFDRMPGR------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175 (579)
Q Consensus 102 ~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 175 (579)
.++.+++.---+|...++. +......++..+.+.|++++|..+++..+. ..|....++..++.+....|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~---~~p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVL---TAKNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHH---hCCCchhHHHHHhhhHhhcCCH
Confidence 4455555555555554431 223344556667777888888888877777 4455566667777777778888
Q ss_pred HHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHH
Q 036340 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE--R-DTFSWNTMISGYIHVLDMEEA 252 (579)
Q Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a 252 (579)
++|...++++... -+.+...+..+...+...|++++|...++++++ | +...+..++..+...|++++|
T Consensus 93 ~~A~~~l~~~l~~---------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 93 DAVLQVVNKLLAV---------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred HHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHH
Confidence 8888888887621 133456677777777888888888888877755 2 344566666667777777777
Q ss_pred HHHhhcCC--CCC-hhhHHHHHHHHHhcCCHHHHHHHHccCCCCC----hhhHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 036340 253 SNLFVKMP--HPD-TLTWNAMVSGYAQIGNLELALDFFKRMPQKN----LVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325 (579)
Q Consensus 253 ~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (579)
...++.+. .|+ ...+..+ ..+...|++++|...++.+.+.+ ...+..+...+...|++++|+..++++....
T Consensus 164 ~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 164 ISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 77666553 232 3333333 34667788888888877765422 2233444566777788888888887777643
Q ss_pred CCCChhhHHHHHHhccCCCchhh----HHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCC-CeeeH
Q 036340 326 EKPDRHTFSSILSMSSGIVDLHL----GMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLK-NVVSW 399 (579)
Q Consensus 326 ~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~ 399 (579)
. .+...+..+...+...|+++. |...++......|.+..++..+...+...|++++|...+++.. ..| +...+
T Consensus 243 p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 243 L-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred C-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 2 123334344444444554443 3444444333334444444445555555555555555444432 122 22233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhH
Q 036340 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMV 458 (579)
Q Consensus 400 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 458 (579)
..+..++.+.|++++|+..++++... .|+.. .+..+..++...|++++|...|++++
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444455555555555444432 23322 12222334444455555555554444
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=3e-18 Score=172.78 Aligned_cols=436 Identities=8% Similarity=0.019 Sum_probs=271.6
Q ss_pred HHHHHccCCHHHHHHHhhcCCC--Cch-hhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHH-HH--HHHHHhCCCHHH
Q 036340 67 ISGYAKTGEMEEALRLFNSMPA--RNV-VSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLS-AL--VSGLIQNGELDE 140 (579)
Q Consensus 67 ~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~l--~~~~~~~g~~~~ 140 (579)
+-...+.|++..|+..|++... |+. .....++..+...|+.++|+..+++...+++..+. .+ +..+...|++++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3344688999999999998873 332 12237778888889999999999988866443333 33 456777899999
Q ss_pred HHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHH
Q 036340 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220 (579)
Q Consensus 141 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 220 (579)
|+++|+++.+ ..|.++..+..++..+...++.++|++.++++. ...|+...+..++..+...++..+
T Consensus 121 Aiely~kaL~---~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~----------~~dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 121 ALALWQSSLK---KDPTNPDLISGMIMTQADAGRGGVVLKQATELA----------ERDPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHHHHHh---hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc----------ccCcchHHHHHHHHHHHhcchHHH
Confidence 9999999888 455556677788888888899999999998887 225555555444444444566666
Q ss_pred HHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHccCCCCChhh
Q 036340 221 AREIFEQMLER---DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVS 297 (579)
Q Consensus 221 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 297 (579)
|++.++++++. +...+..+..++.+.|-...|.++..+- |+..+-...... +.+.|.+..+....++..
T Consensus 188 AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~--p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~- 259 (822)
T PRK14574 188 ALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN--PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRS- 259 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC--ccccCHHHHHHH-----HHHHHHHHHhhccccccc-
Confidence 88888888653 3445566666666667666666666552 322221111110 112222222211111000
Q ss_pred HHHHHHHHHhCCC---chHHHHHHHHHHHc-CCCCChhh-H----HHHHHhccCCCchhhHHHHHHH-HhhcCCCCchHH
Q 036340 298 WNSMIAGCETNKD---YEGAIKLFIQMQVE-GEKPDRHT-F----SSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPIN 367 (579)
Q Consensus 298 ~~~l~~~~~~~~~---~~~a~~~~~~~~~~-~~~~~~~~-~----~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~ 367 (579)
..++ .+.|+.-++.+... +..|.... | .--+-++...++...++..++. ...+.+....+.
T Consensus 260 ---------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 260 ---------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred ---------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 0112 24455555555432 22232221 1 1233456677777777777777 334444445566
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhccC-C-------CCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCC-----------C
Q 036340 368 NALITMYARCGAIVEARIIFEEMKL-L-------KNVVSWNAMIGGCASHGFATEALELFKSMRSFKV-----------L 428 (579)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~-~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~ 428 (579)
..++.+|...+++++|+.+|+++.. . ++......|..++...+++++|..+++++.+.-. .
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 7778888888888888888877631 1 1122235677777788888888888888776211 1
Q ss_pred CC--hh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHH
Q 036340 429 PT--YI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWG 503 (579)
Q Consensus 429 p~--~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 503 (579)
|| -. .+..++..+...|++.+|++.++++... -+-|......++.++...|.+.+|+..++.. ...| +..+..
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~ 488 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILER 488 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHH
Confidence 22 12 2334455667778888888888877643 2336777777777788888888888877665 3445 444556
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC
Q 036340 504 ALLGACRVHNNVELAQVAAEALMKVEPENST 534 (579)
Q Consensus 504 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 534 (579)
..+.++...+++.+|..+.+.+.+..|+++.
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 6666677778888888888888888887764
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=3.8e-19 Score=179.08 Aligned_cols=324 Identities=9% Similarity=-0.026 Sum_probs=190.2
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHH
Q 036340 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER---DTFSWN 237 (579)
Q Consensus 161 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~ 237 (579)
-...++..+.+.|++++|..+++.... ..+.+...+..++.+....|+++.|...++++++. +...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~---------~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~ 114 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVL---------TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVL 114 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHH---------hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 345566667777777777777777752 11334455556666666777777777777777542 344555
Q ss_pred HHHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHccCCC--CCh-hhHHHHHHHHHhCCCc
Q 036340 238 TMISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ--KNL-VSWNSMIAGCETNKDY 311 (579)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~ 311 (579)
.+...+...|++++|+..++++. +.+...+..++..+...|++++|...++.+.. |+. ..+..+ ..+...|++
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCH
Confidence 55666666666666666666655 23344555555666666666666666554432 222 222222 234555666
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc
Q 036340 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391 (579)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 391 (579)
++|...++.+.+....++. .....++..+...|++++|...+++..
T Consensus 194 ~eA~~~~~~~l~~~~~~~~----------------------------------~~~~~l~~~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 194 PEDHDLARALLPFFALERQ----------------------------------ESAGLAVDTLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred HHHHHHHHHHHhcCCCcch----------------------------------hHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666655443222222 222333455566666666666666653
Q ss_pred --CCCCeeeHHHHHHHHHhcCChHH----HHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCC
Q 036340 392 --LLKNVVSWNAMIGGCASHGFATE----ALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464 (579)
Q Consensus 392 --~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 464 (579)
.+.+...+..+...+...|++++ |+..+++..+ ..|+.. .+..+...+...|++++|...+++++.. .
T Consensus 240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~ 314 (656)
T PRK15174 240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---H 314 (656)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---C
Confidence 12234455666666677776664 6777777664 345433 6666666777777777777777776642 3
Q ss_pred C-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC
Q 036340 465 P-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPDKAV-WGALLGACRVHNNVELAQVAAEALMKVEPENS 533 (579)
Q Consensus 465 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 533 (579)
| +...+..++.++.+.|++++|+..++++ ...|+... +..+..++...|+.++|+..|+++++..|++.
T Consensus 315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 315 PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 4 3445556667777777777777777666 33454332 33344556677777777777777777777753
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=5.8e-18 Score=174.43 Aligned_cols=138 Identities=12% Similarity=0.079 Sum_probs=66.6
Q ss_pred hHHHHHHHhhCCC---CCcchHHHHHHHHHccCCHHHHHHHhhcCC---CCchhhHHHHHHHHHhcCChhhHHHHHccCC
Q 036340 45 LEEARYLFDIMPE---RDCVTWNTVISGYAKTGEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118 (579)
Q Consensus 45 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 118 (579)
.++|++++.+..+ .+...+..+..++.+.|++++|..++++.. +.++..+..++.++...|++++|+..+++..
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555442 122234555555555555555555555532 2333444445555555555555555555543
Q ss_pred C--C-CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 119 G--R-DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 119 ~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
. | +.. +..+..++...|+.++|+..++++.+ ..|.+..++..++.++...|..++|++.++.+.
T Consensus 111 ~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~---~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 111 SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP---RAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 2 1 222 44444455555555555555555555 233344444444445555555555555554443
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=2.1e-19 Score=173.04 Aligned_cols=292 Identities=15% Similarity=0.144 Sum_probs=186.3
Q ss_pred HHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCc---chHHH
Q 036340 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR---NIVSW 205 (579)
Q Consensus 129 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 205 (579)
...+...|++++|+..|+++.+ ..|.+..++..++..+...|++++|..+++.+.. .+..+ ....+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--------~~~~~~~~~~~~~ 110 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLK---VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS--------RPDLTREQRLLAL 110 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc--------CCCCCHHHHHHHH
Confidence 3344566777777777777766 3344555677777777777777777777776652 11011 12455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHhhcCC--CCC------hhhHHHHHHHH
Q 036340 206 NSMIMCYAKAGDVVSAREIFEQMLER---DTFSWNTMISGYIHVLDMEEASNLFVKMP--HPD------TLTWNAMVSGY 274 (579)
Q Consensus 206 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~------~~~~~~l~~~~ 274 (579)
..++..|.+.|++++|..+|+++.+. +..++..++..+...|++++|...++.+. .|+ ...+..++..+
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 66667777777777777777776552 34455556666666666666666665554 111 11234455566
Q ss_pred HhcCCHHHHHHHHccCCC--C-ChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHH
Q 036340 275 AQIGNLELALDFFKRMPQ--K-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ 351 (579)
Q Consensus 275 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 351 (579)
.+.|++++|...|+++.+ | +...+..++..+.+.|++++|.++|+++.+.+ |+.
T Consensus 191 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~--------------------- 247 (389)
T PRK11788 191 LARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PEY--------------------- 247 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hhh---------------------
Confidence 667777777777766553 2 23455566666777777777777777766532 111
Q ss_pred HHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036340 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 430 (579)
...++..++.+|...|++++|...++++. ..|+...+..++..+.+.|++++|..+++++.+. .|+
T Consensus 248 -----------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~ 314 (389)
T PRK11788 248 -----------LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPS 314 (389)
T ss_pred -----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcC
Confidence 12234556777778888888888887764 4566666677888888888888888888888753 688
Q ss_pred hhhHHHHHHHhcc---cCcHHHHHHHHHHhHHhhCCCCCcc
Q 036340 431 YITFISVLSACAH---AGLVEEGRQHFKSMVNEYGIEPRIE 468 (579)
Q Consensus 431 ~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 468 (579)
..++..++..+.. .|+.+++..++++++++ ++.|++.
T Consensus 315 ~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 315 LRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred HHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 7777777765543 45788888888888765 5666655
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=1.7e-17 Score=167.42 Aligned_cols=434 Identities=10% Similarity=0.017 Sum_probs=304.2
Q ss_pred HHHHcCCCCChHHHHHHHhhCCCCCcc---hHHHHHHHHHccCCHHHHHHHhhcCCCCchhh-HHHH--HHHHHhcCChh
Q 036340 35 GYISSRGSGFLEEARYLFDIMPERDCV---TWNTVISGYAKTGEMEEALRLFNSMPARNVVS-WNAM--ISGFLQNGDVA 108 (579)
Q Consensus 35 ~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l--~~~~~~~~~~~ 108 (579)
...+.|+ ++.|+..|++..+.++. ....++..+...|+.++|+..+++...|++.. +..+ +..+...|+++
T Consensus 43 i~~r~Gd---~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGD---TAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCC---HHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3346666 99999999999854443 23488888899999999999999999765443 3333 55788889999
Q ss_pred hHHHHHccCCCC---CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccc
Q 036340 109 NAIEFFDRMPGR---DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185 (579)
Q Consensus 109 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 185 (579)
+|+++|+++.+. ++..+..++..+...++.++|++.++++... .+ +...+..++..+...++..+|++.++++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp-~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER---DP-TVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---Cc-chHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999998763 4566777888899999999999999999885 22 3444555555555567777799999999
Q ss_pred cccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHhcCChHHHHHHhhcCCCCC-
Q 036340 186 PVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-DTFSWNTMISGYIHVLDMEEASNLFVKMPHPD- 263 (579)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 263 (579)
.. . .+.+...+..+..++.+.|-...|.++..+-.+- +...+..+ ..+.+.+..+....++
T Consensus 196 l~--------~-~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 196 VR--------L-APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPTR 258 (822)
T ss_pred HH--------h-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcccccc
Confidence 82 2 2446778889999999999999999988875431 11111111 1112222222211010
Q ss_pred h--hhHHHHHHHHHhcCCHHHHHHHHccCCC-----CChh-----hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChh
Q 036340 264 T--LTWNAMVSGYAQIGNLELALDFFKRMPQ-----KNLV-----SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH 331 (579)
Q Consensus 264 ~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 331 (579)
. .-|. -.+.|+.-++.+.. |... ...-.+.++...|++.++++.|+.+...+......
T Consensus 259 ~~~~r~~----------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 259 SETERFD----------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred cchhhHH----------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 0 0010 12233333333222 2111 12234556777888888888888888887665666
Q ss_pred hHHHHHHhccCCCchhhHHHHHHHH-hhc-----CCCCchHHHHHHHHhhhcCCHHHHHHHHHhccC-CC----------
Q 036340 332 TFSSILSMSSGIVDLHLGMQIHQMV-TKT-----VIPDVPINNALITMYARCGAIVEARIIFEEMKL-LK---------- 394 (579)
Q Consensus 332 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~---------- 394 (579)
+-..+..+|...+.+++|..++... ... .+++......|..+|...+++++|..+++.+.. .|
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 7778888888888888888888873 221 233444457899999999999999999999862 33
Q ss_pred ---Cee---eHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-C
Q 036340 395 ---NVV---SWNAMIGGCASHGFATEALELFKSMRSFKVLP-TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-R 466 (579)
Q Consensus 395 ---~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 466 (579)
++. .+..++..+...|+..+|++.++++... .| |......+...+...|.+.+|.+.++.+. .+.| +
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~ 483 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRS 483 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCcc
Confidence 110 1344677788899999999999999864 45 55688889999999999999999997765 4466 5
Q ss_pred cchhHHHHHHhhccCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036340 467 IEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPDKAVWGALLG 507 (579)
Q Consensus 467 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~ 507 (579)
..+....+.++...|++.+|..+.+.+ ...|+......+-+
T Consensus 484 ~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r 525 (822)
T PRK14574 484 LILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDR 525 (822)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence 677778889999999999999998877 34555544444443
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=1e-15 Score=141.41 Aligned_cols=485 Identities=14% Similarity=0.128 Sum_probs=386.3
Q ss_pred HHHccCCHHHHHHHhhcCCC---CchhhHHHHHHHHHhcCChhhHHHHHccCCC---CCcchHHHHHHHHHhCCCHHHHH
Q 036340 69 GYAKTGEMEEALRLFNSMPA---RNVVSWNAMISGFLQNGDVANAIEFFDRMPG---RDSASLSALVSGLIQNGELDEAA 142 (579)
Q Consensus 69 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 142 (579)
+.....+.++|..++.+..+ .+...| .++.+..-++.|..++++..+ .++..|..-...--.+|+.+...
T Consensus 385 aAVelE~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHH
Confidence 33445566667777777662 333333 455666677778877776644 57788887777778899999988
Q ss_pred HHHHHhccCC--CCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCc--chHHHHHHHHHHHhcCCH
Q 036340 143 RVLVKCGSRC--DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR--NIVSWNSMIMCYAKAGDV 218 (579)
Q Consensus 143 ~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 218 (579)
+++.+.+... .|..-+...|..=...|-..|..-.+..+....+ ..|+.. -..+|+.-...|.+.+.+
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avi--------gigvEeed~~~tw~~da~~~~k~~~~ 532 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVI--------GIGVEEEDRKSTWLDDAQSCEKRPAI 532 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHH--------hhccccchhHhHHhhhHHHHHhcchH
Confidence 8887754321 1556666778888888888999999988888887 334432 366899999999999999
Q ss_pred HHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHccCCC
Q 036340 219 VSAREIFEQMLER---DTFSWNTMISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292 (579)
Q Consensus 219 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 292 (579)
+-|..+|...++- +...|...+..--..|..+.-..+|+++. +.....|......+-..|+...|..++..+.+
T Consensus 533 ~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 533 ECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999988774 45667777777777899999999999887 34445566666777888999999999998876
Q ss_pred --C-ChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHH
Q 036340 293 --K-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNA 369 (579)
Q Consensus 293 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 369 (579)
| +...|..-+.....+.+++.|..+|.+... ..|+...|..-+......++.+.|.++++...+.++.-...|..
T Consensus 613 ~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lm 690 (913)
T KOG0495|consen 613 ANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLM 690 (913)
T ss_pred hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3 344777778888899999999999998865 56778888887777788899999999998888889999999999
Q ss_pred HHHHhhhcCCHHHHHHHHHhcc-CCC-CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHHhcccCc
Q 036340 370 LITMYARCGAIVEARIIFEEMK-LLK-NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP-TYITFISVLSACAHAGL 446 (579)
Q Consensus 370 l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 446 (579)
+.+.+.+.++.+.|...|..-. .-| .+..|..|...--+.|.+-+|..++++..-. .| +...|...++.-.+.|.
T Consensus 691 lGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGN 768 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCC
Confidence 9999999999999999887643 344 4556777777778889999999999998754 45 45588899999999999
Q ss_pred HHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 036340 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALM 526 (579)
Q Consensus 447 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 526 (579)
.+.|..++.+++++ .+.+...|..-+.+..+.++-.++.+.+++.. .|+.....+...+....+++.|..-|++++
T Consensus 769 ~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 769 KEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999875 34456777788888888888888888888875 466777788888888899999999999999
Q ss_pred hcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCCCCcceeeEe
Q 036340 527 KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVDF 575 (579)
Q Consensus 527 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 575 (579)
+.+|++..+|..+...+.+.|.-++-.+++++... -.|+-|..|..+
T Consensus 845 k~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 845 KKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred ccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 99999999999999999999998999999988764 346677777654
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=5.8e-16 Score=148.66 Aligned_cols=546 Identities=14% Similarity=0.127 Sum_probs=317.2
Q ss_pred hhcCCCHHHHHHHhccCCC---CchhHHHHHHHHHHHcCCCCChHHHHHHHhhC---CCCCcchHHHHHHHHHccCCHHH
Q 036340 5 YVKRREMAKARKLFDEMPQ---RDVVSWNVMISGYISSRGSGFLEEARYLFDIM---PERDCVTWNTVISGYAKTGEMEE 78 (579)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 78 (579)
+.-+|++++|.+++.++.+ .++.+|..|...|-..|+ .+++...+--+ .+.|...|..+.....+.|++++
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd---~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGD---IEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHccc---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 4455999999999999886 457799999999999888 99998765443 36677889999999999999999
Q ss_pred HHHHhhcCCC---CchhhHHHHHHHHHhcCChhhHHHHHccCCCCCc--------chHHHHHHHHHhCCCHHHHHHHHHH
Q 036340 79 ALRLFNSMPA---RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS--------ASLSALVSGLIQNGELDEAARVLVK 147 (579)
Q Consensus 79 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~ 147 (579)
|.-+|.++.+ ++....-.-+..|-+.|+...|.+.|.++.+.++ ......+..+...++-+.|.+.++.
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999884 3434444567889999999999999998866433 2233456667778888999999998
Q ss_pred hccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCC-------------------CCCCccCCcchHHHHHH
Q 036340 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR-------------------GEGNVRFKRNIVSWNSM 208 (579)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~l 208 (579)
....+ ....+...++.++..+.+...++.+............. -.-..++.++..+. .+
T Consensus 306 ~~s~~-~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl 383 (895)
T KOG2076|consen 306 ALSKE-KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL 383 (895)
T ss_pred HHhhc-cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence 87743 34445567889999999999999988877766530000 00012233333331 11
Q ss_pred HHHHHhc--CCHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHhhcCC----CCChhhHHHHHHHHHhcC
Q 036340 209 IMCYAKA--GDVVSAREIFEQMLE----RDTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIG 278 (579)
Q Consensus 209 ~~~~~~~--~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g 278 (579)
+-++.+. ++..+++..+-.... .++..|..+..++...|++.+|+.+|..+. -.+..+|-.++.+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 2222222 333333322221111 134456666666777777777777766665 223456666666777777
Q ss_pred CHHHHHHHHccCCCCCh---hhHHHHHHHHHhCCCchHHHHHHHHHHHc--------CCCCChhhHHHHHHhccCCCchh
Q 036340 279 NLELALDFFKRMPQKNL---VSWNSMIAGCETNKDYEGAIKLFIQMQVE--------GEKPDRHTFSSILSMSSGIVDLH 347 (579)
Q Consensus 279 ~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~ 347 (579)
.+++|...|+.+...++ ..--.|...+.+.|++++|.+.++.+... +..|+..........+...|+.+
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 77777777766654222 23334445566667777766666664311 12222222222222333333322
Q ss_pred hHHHH----HHH------------------------------------------------------------HhhcCCC-
Q 036340 348 LGMQI----HQM------------------------------------------------------------VTKTVIP- 362 (579)
Q Consensus 348 ~a~~~----~~~------------------------------------------------------------~~~~~~~- 362 (579)
.-..+ ... ...+..-
T Consensus 544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid 623 (895)
T KOG2076|consen 544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID 623 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence 21110 000 0000000
Q ss_pred Cc-hHHHHHHHHhhhcCCHHHHHHHHHhcc-----CCCCe---eeHHHHHHHHHhcCChHHHHHHHHHhHhC-C--CCCC
Q 036340 363 DV-PINNALITMYARCGAIVEARIIFEEMK-----LLKNV---VSWNAMIGGCASHGFATEALELFKSMRSF-K--VLPT 430 (579)
Q Consensus 363 ~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~--~~p~ 430 (579)
+. ..+..++..+++.+++++|..+...+. ..++. ..-...+.+.+..+++..|...++.|... + ..|.
T Consensus 624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 11 234456677778888888888776653 11111 11233445556678888888888877753 1 1122
Q ss_pred hh-hHHHHHHHh-----------------------------------cccCcHHHHHHHHHHhHHhhCCCCCcchhH-HH
Q 036340 431 YI-TFISVLSAC-----------------------------------AHAGLVEEGRQHFKSMVNEYGIEPRIEHFA-SL 473 (579)
Q Consensus 431 ~~-~~~~l~~~~-----------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l 473 (579)
.. .|+..++.. ...+.+..|+..+-.+... .|+....+ .+
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~---~pd~Pl~nl~l 780 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ---NPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh---CCCCcHHHHHH
Confidence 11 222111111 1234455565555544432 34322222 22
Q ss_pred HHHhh----------ccCChHHHHHHHHhCC--CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC-----
Q 036340 474 VDIVG----------RHGRLEDAMDLIKGMP--FEP--DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST----- 534 (579)
Q Consensus 474 ~~~~~----------~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----- 534 (579)
+-++. |.-..-....++++.. -.+ ....+-+++++|...|-..-|..+|+++++..|.+..
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d 860 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKED 860 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCC
Confidence 22211 1111223344443331 112 3456677788888888888888888888887654321
Q ss_pred -------CchhhhhhhhhcCCchHHHHHHHH
Q 036340 535 -------PYVLLYNMYADVGRWDDANEVRLL 558 (579)
Q Consensus 535 -------~~~~l~~~~~~~g~~~~A~~~~~~ 558 (579)
+-..|..+|...|+.+.|..++++
T Consensus 861 ~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 861 NYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 244666788888888888887765
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1.7e-17 Score=146.52 Aligned_cols=465 Identities=16% Similarity=0.135 Sum_probs=288.9
Q ss_pred HHHHHHHHHccCCHHHHHHHhhcCCC----CchhhH-HHHHHHHHhcCChhhHHHHHccCCCC----Cc----chHHHHH
Q 036340 63 WNTVISGYAKTGEMEEALRLFNSMPA----RNVVSW-NAMISGFLQNGDVANAIEFFDRMPGR----DS----ASLSALV 129 (579)
Q Consensus 63 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~----~~----~~~~~l~ 129 (579)
+..|..-|.....+.+|+..++-+.+ ||.... -.+.+.+.+..++.+|+.+++..... +. ...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 44555667777888999999988773 443322 23557889999999999999876542 22 2344455
Q ss_pred HHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccC----CcchHHH
Q 036340 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF----KRNIVSW 205 (579)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 205 (579)
-.+.+.|.+++|+..|+.+.+. .|+..+-..|+-++...|+.++..+.|.+++........+.-+ .|+....
T Consensus 284 vtfiq~gqy~dainsfdh~m~~----~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE----APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh----CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 5678999999999999999874 3444444445556667899999999999987443222111111 2333333
Q ss_pred HHHH-----HHHHhcC--CHHHHHHHHHhcCC----CChhH-HHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHH
Q 036340 206 NSMI-----MCYAKAG--DVVSAREIFEQMLE----RDTFS-WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273 (579)
Q Consensus 206 ~~l~-----~~~~~~~--~~~~A~~~~~~~~~----~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 273 (579)
+.-+ .-+.+.+ +.++++-.-.+++. ++... +..-+..+-.....+.|..+ . ..-.--
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl---------e--i~ka~~ 428 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL---------E--INKAGE 428 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh---------h--hhHHHH
Confidence 3222 1122211 22233222222222 22110 11111111111111111100 0 001123
Q ss_pred HHhcCCHHHHHHHHccCCCCChhhH----HHHH-HHHHh-CCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchh
Q 036340 274 YAQIGNLELALDFFKRMPQKNLVSW----NSMI-AGCET-NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLH 347 (579)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~~~~~~~----~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 347 (579)
+.+.|+++.|.++++-..+.|..+- +.|- .-|.+ ..++..|..+-+..+... +-+......-.......|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 4556666666666655554332221 1111 11111 234444544444333211 112222222222334456666
Q ss_pred hHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036340 348 LGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSF 425 (579)
Q Consensus 348 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 425 (579)
.|...++...............+.-.+...|++++|+..|-.+. ...+..+...+...|-...+..+|++++.+..+
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s- 586 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS- 586 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-
Confidence 66666666443333334444445566778899999999998775 345666677778888888999999999988874
Q ss_pred CCCC-ChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCCCHHHH
Q 036340 426 KVLP-TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPDKAVW 502 (579)
Q Consensus 426 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 502 (579)
+.| |+..+..|...|-+.|+-.+|.+++-.- +..-| +.++...|+.-|....-+++|+.+|++. -+.|+..-|
T Consensus 587 -lip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 587 -LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred -cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 455 5558889999999999999999886543 34445 8899999999999999999999999998 478999999
Q ss_pred HHHHHHH-hhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCC
Q 036340 503 GALLGAC-RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548 (579)
Q Consensus 503 ~~l~~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 548 (579)
..++..| .+.|++.+|...|+......|.+...+..|+.++...|.
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9888665 567999999999999999999999999999999888885
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=1.4e-14 Score=139.37 Aligned_cols=509 Identities=12% Similarity=0.096 Sum_probs=252.3
Q ss_pred hHHHHHHHhhCCC---CCcchHHHHHHHHHccCCHHHHHHHhhcCC---CCchhhHHHHHHHHHhcCChhhHHHHHccCC
Q 036340 45 LEEARYLFDIMPE---RDCVTWNTVISGYAKTGEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118 (579)
Q Consensus 45 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 118 (579)
+++|..++.++.+ .++..|..|...|-++|+.+++...+-.+. +.|..-|..+.....+.|++++|.-.|.+..
T Consensus 155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 6777666666652 344566666666766676666665543322 4445566666666666666777766666665
Q ss_pred CCCc---chHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhh----HHHHHHHHhhCCCHHHHHHHHccccccCCC
Q 036340 119 GRDS---ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRA----YNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191 (579)
Q Consensus 119 ~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 191 (579)
+.++ .....-...|.+.|+...|.+.|.++... .+|.+..- -..+++.+...++-+.|.+.++....
T Consensus 235 ~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~--~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s---- 308 (895)
T KOG2076|consen 235 QANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL--DPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS---- 308 (895)
T ss_pred hcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----
Confidence 4333 23333445566666776676666666664 22222221 22334455556666666666666651
Q ss_pred CCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChh----------------------HHH----HHHH
Q 036340 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDTF----------------------SWN----TMIS 241 (579)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~----------------------~~~----~l~~ 241 (579)
..+-..+...++.++..+.+...++.+......... +|.. +|. .+.-
T Consensus 309 ---~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 309 ---KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred ---hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 111123344556666666666666666655544422 1100 000 1111
Q ss_pred HHHhc--CChHHHHHHhhcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHccCCC----CChhhHHHHHHHHHhCCCc
Q 036340 242 GYIHV--LDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ----KNLVSWNSMIAGCETNKDY 311 (579)
Q Consensus 242 ~~~~~--~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 311 (579)
++... ++..+++..+..-. ..+...|.-+..+|...|++.+|+.+|..+.. .+...|-.+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 12222 22222222221111 12334555566666666666666666666654 2344566666666666666
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH---------HhhcCCCCchHHHHHHHHhhhcCCHHH
Q 036340 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM---------VTKTVIPDVPINNALITMYARCGAIVE 382 (579)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~ 382 (579)
+.|++.|+..+..... +...-..+...+...|+.++|.+.+.. ......|+..+.......+...|+.++
T Consensus 466 e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 6666666666553211 222333444455566666666665554 112233444444455555566666555
Q ss_pred HHHHHHhcc--------CCC-----------------CeeeHHHHHHHHHhcCChHHHHHH------HHHhHhCCCCCCh
Q 036340 383 ARIIFEEMK--------LLK-----------------NVVSWNAMIGGCASHGFATEALEL------FKSMRSFKVLPTY 431 (579)
Q Consensus 383 A~~~~~~~~--------~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~------~~~~~~~~~~p~~ 431 (579)
=..+-.++. .-| .......++.+-.+.++......- +.--...|+.-+.
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd 624 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD 624 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence 333322221 000 000111112222221111111000 0000111222222
Q ss_pred h--hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchh----HHHHHHhhccCChHHHHHHHHhC--C----CCC-C
Q 036340 432 I--TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF----ASLVDIVGRHGRLEDAMDLIKGM--P----FEP-D 498 (579)
Q Consensus 432 ~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~--~----~~~-~ 498 (579)
. .+..++.++++.+++++|..+...+....-+..+...- ...+.+-...+++..|...++.+ . ..| -
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 1 34445556777777888877777766543333333321 23334455677777777777766 1 123 2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC-CCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 499 KAVWGALLGACRVHNNVELAQVAAEALMKVEPEN-STPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 499 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
...|+.......+.++-.--.+.+..+....|++ +......+..+...+.|..|+..+-++-..+
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~ 770 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN 770 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC
Confidence 2344444444555555444445555555556665 3334444556667777777777766655444
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=1.8e-14 Score=133.47 Aligned_cols=415 Identities=11% Similarity=0.081 Sum_probs=304.0
Q ss_pred HHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHH
Q 036340 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMI 209 (579)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 209 (579)
.+.....+.+.|..++.++.+ -.|.+...|. ++.+..-++.|.++++++. ..++.+...|.+..
T Consensus 384 KaAVelE~~~darilL~rAve---ccp~s~dLwl----AlarLetYenAkkvLNkaR---------e~iptd~~IWitaa 447 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVE---CCPQSMDLWL----ALARLETYENAKKVLNKAR---------EIIPTDREIWITAA 447 (913)
T ss_pred HHHHhccChHHHHHHHHHHHH---hccchHHHHH----HHHHHHHHHHHHHHHHHHH---------hhCCCChhHHHHHH
Confidence 344456667778888888877 5565555554 4455567788888888885 35677788888888
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhcCChHHHHHHhhcCC------CCChhhHHHHHHHHH
Q 036340 210 MCYAKAGDVVSAREIFEQMLE--------RDTFSWNTMISGYIHVLDMEEASNLFVKMP------HPDTLTWNAMVSGYA 275 (579)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~ 275 (579)
..--.+|+.+...+++++-+. -+...|..=...+-..|..--+..+..... ..-..||..-...|.
T Consensus 448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~ 527 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE 527 (913)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence 888888888888888776532 144455555555555565555555554443 222357777777888
Q ss_pred hcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHH
Q 036340 276 QIGNLELALDFFKRMPQ---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352 (579)
Q Consensus 276 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 352 (579)
+.+.++-|..+|....+ .+...|...+..--..|..+.-..+|++....- +-....+.......-..|+...|+.+
T Consensus 528 k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred hcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 88888888888887776 345567777766667788888888888887653 22334444444566677888888888
Q ss_pred HHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh
Q 036340 353 HQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 431 (579)
+...-...+.+..++..-+........++.|..+|.+.. ..|+...|.--+....-.++.++|++++++.++ ..|+.
T Consensus 607 l~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f 684 (913)
T KOG0495|consen 607 LDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDF 684 (913)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCch
Confidence 888666666788888888888889999999999998875 567777787777777778889999999988885 46776
Q ss_pred h-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 036340 432 I-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM--PFEPDKAVWGALLGA 508 (579)
Q Consensus 432 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 508 (579)
. .|..+.+.+.+.++.+.|...|..-.+. .+..+..|..|+..-.+.|...+|..++++. ..+-+...|...++.
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ 762 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRM 762 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 6 7777778888899999998888766532 2335678888888888888999999999887 334477888889998
Q ss_pred HhhcCCHHHHHHHHHHHhhcCCCC------------------------------CCCchhhhhhhhhcCCchHHHHHHHH
Q 036340 509 CRVHNNVELAQVAAEALMKVEPEN------------------------------STPYVLLYNMYADVGRWDDANEVRLL 558 (579)
Q Consensus 509 ~~~~~~~~~A~~~~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~ 558 (579)
-.+.|+.+.|.....++++-.|.+ +..+...+..+....++++|++-|.+
T Consensus 763 ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~R 842 (913)
T KOG0495|consen 763 ELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFER 842 (913)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999998888888755543 33455667777778888899999988
Q ss_pred HHhCCCC
Q 036340 559 MKSNNIK 565 (579)
Q Consensus 559 ~~~~~~~ 565 (579)
..+.+..
T Consensus 843 avk~d~d 849 (913)
T KOG0495|consen 843 AVKKDPD 849 (913)
T ss_pred HHccCCc
Confidence 8765543
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=2.4e-17 Score=145.60 Aligned_cols=443 Identities=13% Similarity=0.075 Sum_probs=291.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHH
Q 036340 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204 (579)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (579)
...+...|..+....+|+..++-+++.. ..|.....-..++..+.+..++.+|+++|+......++..+ ......
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink----~~riki 278 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINK----DMRIKI 278 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccch----hhHHHH
Confidence 3345566666677778888887776652 33433344456677788888888888888776632111110 112344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHhhcCC----------------CCChhh
Q 036340 205 WNSMIMCYAKAGDVVSAREIFEQMLE--RDTFSWNTMISGYIHVLDMEEASNLFVKMP----------------HPDTLT 266 (579)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------------~~~~~~ 266 (579)
.+.+.-.+.+.|+++.|+..|+...+ |+..+-..++-++...|+.++..+.|.++. .|+...
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 55556667788888888888887755 455555566667777788888888887775 122222
Q ss_pred HHHHH-----HHHHhcCC--HHHHH----HHHccCCCCChhh---H----------H--------HHHHHHHhCCCchHH
Q 036340 267 WNAMV-----SGYAQIGN--LELAL----DFFKRMPQKNLVS---W----------N--------SMIAGCETNKDYEGA 314 (579)
Q Consensus 267 ~~~l~-----~~~~~~g~--~~~A~----~~~~~~~~~~~~~---~----------~--------~l~~~~~~~~~~~~a 314 (579)
.+..+ .-.-+.++ .++++ +++.-+..|+... | . .-...+.++|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 22222 11111111 12221 2222222232110 1 1 112347889999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHH--HHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhccC
Q 036340 315 IKLFIQMQVEGEKPDRHTFSSI--LSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKL 392 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 392 (579)
+++++-..+...+.....-+.+ +..+....++..|.++-+.......-++.....-.+.....|++++|.+.|++..
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal- 517 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL- 517 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH-
Confidence 9999888765544333333333 3333445667777777666444444555555444555566799999999999987
Q ss_pred CCCeeeHHHH---HHHHHhcCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcc
Q 036340 393 LKNVVSWNAM---IGGCASHGFATEALELFKSMRSFKVLP-TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE 468 (579)
Q Consensus 393 ~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 468 (579)
..|...-..| .-.+-..|+.++|++.|-++. ++-. +...+..+...|....+..+|++++.+... -++.|+.
T Consensus 518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh--~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ 593 (840)
T KOG2003|consen 518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLH--AILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPA 593 (840)
T ss_pred cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHH
Confidence 4444433333 334667899999999999887 4333 445777888899999999999999987752 3444788
Q ss_pred hhHHHHHHhhccCChHHHHHHHH-hCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhc
Q 036340 469 HFASLVDIVGRHGRLEDAMDLIK-GMPF-EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV 546 (579)
Q Consensus 469 ~~~~l~~~~~~~g~~~~A~~~~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 546 (579)
+...|++.|-+.|+...|.+..- .... +.+..+...+...|....-+++|+..|+++.-+.|+...+...++.++.+.
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 99999999999999999998654 4453 447888888888888888999999999999999999887666667778899
Q ss_pred CCchHHHHHHHHHHhCCCCCCCcceeeEeccC
Q 036340 547 GRWDDANEVRLLMKSNNIKKPTGYSWVDFSPC 578 (579)
Q Consensus 547 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (579)
|+|++|..+++.+.+ .++.+-.|.-..+..|
T Consensus 674 gnyqka~d~yk~~hr-kfpedldclkflvri~ 704 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIA 704 (840)
T ss_pred ccHHHHHHHHHHHHH-hCccchHHHHHHHHHh
Confidence 999999999999865 3444444444444444
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.5e-15 Score=132.70 Aligned_cols=215 Identities=15% Similarity=0.077 Sum_probs=166.4
Q ss_pred cCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHH
Q 036340 341 SGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALEL 418 (579)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 418 (579)
.-.|+.-.+..-++..-...+.+...|-.+..+|....+.++....|.... .+.++.+|.--...+.-.+++++|..=
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 345666666666666444445455557778888888888888888888775 345677787777778888889999999
Q ss_pred HHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCC
Q 036340 419 FKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFE 496 (579)
Q Consensus 419 ~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 496 (579)
|++.++ +.|+.. .|.-+..+..++++++++...|++..++ ++..+++|+..++++..++++++|.+.|+.. ...
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999884 567544 7777777778889999999999999764 4557788999999999999999999999876 333
Q ss_pred CC---------HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 497 PD---------KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 497 ~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
|. +.+...++ .+.-.+++..|+.+++++.+++|....++..|+.+..++|+.++|+++|++..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33 22222222 23345899999999999999999999999999999999999999999998754
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=5.9e-14 Score=125.12 Aligned_cols=419 Identities=12% Similarity=0.107 Sum_probs=209.0
Q ss_pred hcCChhhHHHHHccCCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHH
Q 036340 103 QNGDVANAIEFFDRMPG---RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179 (579)
Q Consensus 103 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 179 (579)
.++++..|..+|++... .+...|...+..-.++..+..|..++++++. ..|.-...|...+.+--..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt---~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT---ILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH---hcchHHHHHHHHHHHHHHhcccHHHH
Confidence 34444444444444433 2333344444444444455555555555444 22322333433333334444555555
Q ss_pred HHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCChhHHHHHHHHHHhcCChHHHHHHhh
Q 036340 180 KLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM--LERDTFSWNTMISGYIHVLDMEEASNLFV 257 (579)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (579)
++|++.. ...|+...|++.++.-.+.+.++.|..+|++. ..|++.+|-..+.--.+.|+...+..+|+
T Consensus 162 qiferW~----------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 162 QIFERWM----------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHHHHHH----------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 5554443 23445555555555555555555555555443 23444444444444444455444444444
Q ss_pred cCC------CCChhhHHHHHHHHHhcCCHHHHHHHHccCCC--C---ChhhHHHHHHHHHhCCCchHHHHH--------H
Q 036340 258 KMP------HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ--K---NLVSWNSMIAGCETNKDYEGAIKL--------F 318 (579)
Q Consensus 258 ~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~--------~ 318 (579)
.+. ..+...+.+....-.++..++.|.-+|+-..+ | ....|......--+-|+.....+. |
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 443 01112233333333334445555555443332 1 122233333322333443322222 2
Q ss_pred HHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCch-------HHHHHH---HHhhhcCCHHHHHHHHH
Q 036340 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP-------INNALI---TMYARCGAIVEARIIFE 388 (579)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~---~~~~~~~~~~~A~~~~~ 388 (579)
+.++..+ .-|-.++-..+......|+.+...++++..-..+||-.. +|.-+= -.-....+.+.+.++|+
T Consensus 312 E~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2222221 223334444444444555555555555554444444211 111111 11123466677777776
Q ss_pred hcc--CCCCeeeH----HHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhC
Q 036340 389 EMK--LLKNVVSW----NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462 (579)
Q Consensus 389 ~~~--~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 462 (579)
... ++....++ .....-..++.+...|.+++...+ |.-|...+|...|..-.+.++++....+|++.+ .
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl---e 465 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL---E 465 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---h
Confidence 553 22333343 333333456677777777777777 667777777777777777777888888877776 3
Q ss_pred CCC-CcchhHHHHHHhhccCChHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCch
Q 036340 463 IEP-RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD----KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYV 537 (579)
Q Consensus 463 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 537 (579)
..| +..+|...+..-...|+.+.|..+|.-+-..|. ...|...+.--...|.++.|..+|+++++..+-.. .|.
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWi 544 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWI 544 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHH
Confidence 345 566777777777777888888777776643442 23455555555667778888888888776665533 344
Q ss_pred hhhh
Q 036340 538 LLYN 541 (579)
Q Consensus 538 ~l~~ 541 (579)
..+.
T Consensus 545 sFA~ 548 (677)
T KOG1915|consen 545 SFAK 548 (677)
T ss_pred hHHH
Confidence 4443
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.5e-13 Score=121.17 Aligned_cols=449 Identities=15% Similarity=0.128 Sum_probs=334.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHhhcCCC---CchhhHHHHHHHHHhcCChhhHHHHHccCCC--CC-cchHHHHHHHHHhC
Q 036340 62 TWNTVISGYAKTGEMEEALRLFNSMPA---RNVVSWNAMISGFLQNGDVANAIEFFDRMPG--RD-SASLSALVSGLIQN 135 (579)
Q Consensus 62 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~ 135 (579)
.|.....--..++++..|..+|+++.. .+...|.-.+..=.++..+..|..++++... |. ...|...+.+--..
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 333444444456788899999999984 4556777788888999999999999998764 32 34677777777889
Q ss_pred CCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhc
Q 036340 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA 215 (579)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (579)
|++..|.++|++...- .|+..+|.+.+..-.+-..++.|..+|++.. -+.|++.+|.-.+..-.+.
T Consensus 155 gNi~gaRqiferW~~w----~P~eqaW~sfI~fElRykeieraR~IYerfV----------~~HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW----EPDEQAWLSFIKFELRYKEIERARSIYERFV----------LVHPKVSNWIKYARFEEKH 220 (677)
T ss_pred cccHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh----------eecccHHHHHHHHHHHHhc
Confidence 9999999999998864 7888999999999999999999999999987 4579999999999999999
Q ss_pred CCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhcCChHHHHHHhhcCC---CCC--hhhHHHHHHHHHhcCCHHHHH
Q 036340 216 GDVVSAREIFEQMLER------DTFSWNTMISGYIHVLDMEEASNLFVKMP---HPD--TLTWNAMVSGYAQIGNLELAL 284 (579)
Q Consensus 216 ~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~ 284 (579)
|+...|..+|+..++. +...+.+.+.--.+...++.|..+|+-.. +.+ ...|..+...--+-|+.....
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 9999999999988663 23345555555566778888888887666 222 345666665555566654444
Q ss_pred HHHc--------cCCCC---ChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCh-------hhHHHHHHhc---cCC
Q 036340 285 DFFK--------RMPQK---NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR-------HTFSSILSMS---SGI 343 (579)
Q Consensus 285 ~~~~--------~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~---~~~ 343 (579)
+..- ..... |-.+|-..+..-...|+.+...++|++.+.. ++|-. ..|..+=-++ ...
T Consensus 301 d~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3332 22223 4456777777778889999999999999864 44421 1222221222 367
Q ss_pred CchhhHHHHHHHHhhcCCCCchHHHHHHHHh----hhcCCHHHHHHHHHhcc-CCCCeeeHHHHHHHHHhcCChHHHHHH
Q 036340 344 VDLHLGMQIHQMVTKTVIPDVPINNALITMY----ARCGAIVEARIIFEEMK-LLKNVVSWNAMIGGCASHGFATEALEL 418 (579)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 418 (579)
.+.+...++++....-+|....+|..+--+| .++.++..|.+++.... ..|...++...|..-.+.++++.+..+
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 8899999999996667777777766555444 46789999999998764 678888899999999999999999999
Q ss_pred HHHhHhCCCCC-ChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCC
Q 036340 419 FKSMRSFKVLP-TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFE 496 (579)
Q Consensus 419 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 496 (579)
+++.++- .| +..+|......-...|+.+.|..+|+-++....+......+...+..-...|.+++|..+++.+ ...
T Consensus 460 YEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 460 YEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9999965 45 4558888877778899999999999998875333333445666666667899999999999987 334
Q ss_pred CCHHHHHHHHHHHh-----hcC-----------CHHHHHHHHHHHhh
Q 036340 497 PDKAVWGALLGACR-----VHN-----------NVELAQVAAEALMK 527 (579)
Q Consensus 497 ~~~~~~~~l~~~~~-----~~~-----------~~~~A~~~~~~~~~ 527 (579)
+...+|..+..--. +.+ ....|..+|+++..
T Consensus 538 ~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 538 QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 44556666553322 333 56788899998875
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=1.4e-15 Score=141.43 Aligned_cols=281 Identities=16% Similarity=0.093 Sum_probs=226.6
Q ss_pred CCHHHHHHHHccCCC--CCh-hhHHHHHHHHHhCCCchHHHHHHHHHHHcCC--CCChhhHHHHHHhccCCCchhhHHHH
Q 036340 278 GNLELALDFFKRMPQ--KNL-VSWNSMIAGCETNKDYEGAIKLFIQMQVEGE--KPDRHTFSSILSMSSGIVDLHLGMQI 352 (579)
Q Consensus 278 g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 352 (579)
-+..+|...|.++.. +|. .....+..+|...+++++|.++|+.+.+... .-+..+|.+++--+. -+.+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq----~~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ----DEVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH----hhHHHHH
Confidence 356788888888543 343 3445677889999999999999998876431 224566666654332 1223333
Q ss_pred HHH-HhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCC-CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC
Q 036340 353 HQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLK-NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429 (579)
Q Consensus 353 ~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 429 (579)
+.. .....+..+.+|.++.++|.-.++.+.|++.|++.. ..| ...+|+.+..-+.....++.|...|+..+ ++.|
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al--~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL--GVDP 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh--cCCc
Confidence 444 556677889999999999999999999999999875 444 56788888888999999999999999998 6677
Q ss_pred Chh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 036340 430 TYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGAL 505 (579)
Q Consensus 430 ~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 505 (579)
... .|..+...|.++++++.|.-.|++++ .+.| +......++..+.+.|+.++|+.+++++ ..+| |+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 666 88888999999999999999999887 6677 5667778889999999999999999998 4444 66666666
Q ss_pred HHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCCC
Q 036340 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567 (579)
Q Consensus 506 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 567 (579)
+..+...+++++|+..+|++.++-|++..++..++.+|.+.|+.+.|+..|--+.+..++.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 77788899999999999999999999999999999999999999999999998887665543
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=7.3e-17 Score=146.72 Aligned_cols=253 Identities=17% Similarity=0.186 Sum_probs=110.5
Q ss_pred HHHHHHHhcCCHHHHHHHHccCC-C----CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCC
Q 036340 269 AMVSGYAQIGNLELALDFFKRMP-Q----KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343 (579)
Q Consensus 269 ~l~~~~~~~g~~~~A~~~~~~~~-~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (579)
.+...+.+.|++++|.+++++.. . .|+..|..+...+...++++.|...++++...+..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~---------------- 76 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA---------------- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence 34556666677777777774322 1 23334445555555666666666666666554322
Q ss_pred CchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCCeeeHHHHHHHHHhcCChHHHHHHHHHh
Q 036340 344 VDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLKNVVSWNAMIGGCASHGFATEALELFKSM 422 (579)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 422 (579)
++..+..++.. ...+++++|..++...- ..+++..+..++..+.+.++++++..+++.+
T Consensus 77 -------------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 136 (280)
T PF13429_consen 77 -------------------NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKL 136 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred -------------------ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 23333445554 57788888888776642 3456677778888889999999999999997
Q ss_pred HhCC-CCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhCC--CCCC
Q 036340 423 RSFK-VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGMP--FEPD 498 (579)
Q Consensus 423 ~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 498 (579)
.... .+++...|..+...+.+.|+.++|++.++++++. .| +......++..+...|+.+++..+++... .+.|
T Consensus 137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 137 EELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp HH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred HhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 7533 2345557778888889999999999999999864 56 57778889999999999999888887762 2446
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 499 KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 499 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
+..+..+..++...|+.++|+..++++.+.+|+|+.++..++.++...|+.++|..+.+++.
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67788899999999999999999999999999999999999999999999999999988764
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=4.9e-13 Score=119.91 Aligned_cols=414 Identities=12% Similarity=0.017 Sum_probs=255.5
Q ss_pred HHHHHHHhcCChhhHHHHHccCCC--CC-cchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhC
Q 036340 96 AMISGFLQNGDVANAIEFFDRMPG--RD-SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR 172 (579)
Q Consensus 96 ~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 172 (579)
..++-|.++|.+++|++.+....+ |+ +..|.....+|...|++++..+.-.++++ -.|..+.++..-..++-..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE---l~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE---LNPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh---cCcHHHHHHHHHHHHHHhh
Confidence 345667777888888888877654 44 66777778888888888888777777776 4566666777777777777
Q ss_pred CCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCh
Q 036340 173 GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE---RDTFSWNTMISGYIHVLDM 249 (579)
Q Consensus 173 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 249 (579)
|++++|+.=..-.-- ..|+... .+ ..++.-..+.--..++.+-+..-.. |++....+....+... +
T Consensus 197 g~~~eal~D~tv~ci-------~~~F~n~-s~-~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~ 265 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCI-------LEGFQNA-SI-EPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--P 265 (606)
T ss_pred ccHHHHHHhhhHHHH-------hhhcccc-hh-HHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--c
Confidence 777776432221100 0011111 01 0111111111111222222221111 1221112221111100 0
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHccCC-------CCC---h------hhHHHHHHHHHhCCCch
Q 036340 250 EEASNLFVKMPHPDTLTWNAMVSGYAQI-GNLELALDFFKRMP-------QKN---L------VSWNSMIAGCETNKDYE 312 (579)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-------~~~---~------~~~~~l~~~~~~~~~~~ 312 (579)
. ........+.|...-..+-..+... ..+..|.+.+.+-. ..+ . .+.......+.-.|+.-
T Consensus 266 ~--~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 266 K--PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred c--ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 0 0000000001111111111111111 12444444433221 111 1 11222222344568899
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-
Q 036340 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK- 391 (579)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 391 (579)
.|..-|+..+.....++.. |..+..+|....+.+.....|.+...-.+.++.+|..-..++.-.+++++|..=|++..
T Consensus 344 ~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred hhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999998765544332 66777788999999999999999888899999999999999999999999999999875
Q ss_pred CC-CCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC----
Q 036340 392 LL-KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR---- 466 (579)
Q Consensus 392 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 466 (579)
.. .+...|..+..+..+.+++++++..|++.++. .+.-+..|+.....+..+++++.|.+.|+..+. +.|.
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~ 498 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLI 498 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccc
Confidence 33 35666777777778889999999999999863 333445999999999999999999999998874 3443
Q ss_pred ---cch--hHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCC
Q 036340 467 ---IEH--FASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531 (579)
Q Consensus 467 ---~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 531 (579)
+.. ...++.. .-.+++..|..++.+. ...| ....+..+...-.++|+.++|+++|++...+-..
T Consensus 499 ~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred cccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 111 1222222 2348999999999988 6667 4568889999999999999999999999876544
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.5e-13 Score=121.43 Aligned_cols=349 Identities=13% Similarity=0.051 Sum_probs=242.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc-CChHHHHHHhhcCC-----CCChhhHHHHHHHHHhcCCHHH
Q 036340 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV-LDMEEASNLFVKMP-----HPDTLTWNAMVSGYAQIGNLEL 282 (579)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~ 282 (579)
...|....+.++|...|.+.+..|+..+..+...-... --..+-..+++... ..+......+.....-...-+.
T Consensus 148 gk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~ 227 (611)
T KOG1173|consen 148 GKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE 227 (611)
T ss_pred eehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc
Confidence 34566777889999999988887776655543322211 11112233333211 1122222222111100000000
Q ss_pred HHHHH--ccCC--CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhh
Q 036340 283 ALDFF--KRMP--QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358 (579)
Q Consensus 283 A~~~~--~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 358 (579)
....- ..+. +.++........-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+-...-.
T Consensus 228 ~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~ 306 (611)
T KOG1173|consen 228 SLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD 306 (611)
T ss_pred ccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 00000 0000 1344455555666778899999999999987653 34555555555666677766555544444667
Q ss_pred cCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCC-CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh-hHH
Q 036340 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLK-NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI-TFI 435 (579)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~ 435 (579)
..|..+.+|.+++.-|...|++.+|++.|.+.. ..| =...|..++.+|.-.|..++|+..+....+. -|... .+.
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~L 384 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSL 384 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHH
Confidence 788888999999999999999999999999875 222 3457999999999999999999999887743 34333 455
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhCC--------CCC-CHHHHHHH
Q 036340 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGMP--------FEP-DKAVWGAL 505 (579)
Q Consensus 436 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l 505 (579)
.+..-|.+.++...|.++|..+. ++-| |+...+.++-+....+.+.+|..+|+..- ..+ -..+++.+
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL 461 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL 461 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH
Confidence 55667888999999999999887 6667 67777888888888999999999998761 112 34578899
Q ss_pred HHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 506 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
+.++.+.+.+++|+..+++++.+.|.++.++..++-+|...|+++.|.+.|.+..-..
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999876433
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.4e-12 Score=116.33 Aligned_cols=352 Identities=16% Similarity=0.086 Sum_probs=199.4
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCc--hhhHHHHH
Q 036340 89 RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL--VRAYNTLI 166 (579)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~ 166 (579)
.|+..+...+..+-+.|..+.|+..|......-+..|.+.+....-..+.+.+..+.. +.+.+ ...-..+.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-------~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-------GLPSDMHWMKKFFLK 234 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-------cCcccchHHHHHHHH
Confidence 3444444444555566666777776666555444444444333222222222222211 11211 11112234
Q ss_pred HHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh------hHHHHHH
Q 036340 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT------FSWNTMI 240 (579)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~ 240 (579)
.++......+++..-.+... ..|++.+...-+..+.+.-...|+++|+.+|+++.+.|+ .+|..++
T Consensus 235 ~a~~el~q~~e~~~k~e~l~--------~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L 306 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLS--------SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence 45555556666666666665 556665555555555666667777777777777766543 3444433
Q ss_pred HHHHhcCChH-HHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHccCCCCC---hhhHHHHHHHHHhCCCchHHHH
Q 036340 241 SGYIHVLDME-EASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKN---LVSWNSMIAGCETNKDYEGAIK 316 (579)
Q Consensus 241 ~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~ 316 (579)
-+........ -|..++ .+.+-.+.|...+.+-|+-.++.++|..+|++..+-| ...|+.+.+-|....+...|++
T Consensus 307 Yv~~~~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 307 YVKNDKSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HHHhhhHHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHH
Confidence 2222111111 111111 1112233455555555666666666666666655422 2355556666666666666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCC
Q 036340 317 LFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLK 394 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~ 394 (579)
-|+..++- .|.|-..|..+.++|.-.+.+.-|+-.|++.. .+.
T Consensus 386 sYRrAvdi-----------------------------------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn 430 (559)
T KOG1155|consen 386 SYRRAVDI-----------------------------------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN 430 (559)
T ss_pred HHHHHHhc-----------------------------------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 66655543 33445556677788888888888888887764 344
Q ss_pred CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhh---C-CCC-Ccch
Q 036340 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY---G-IEP-RIEH 469 (579)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~-~~~~ 469 (579)
|...|.+|+.+|.+.++.++|++.|.+....| ..+...+..|...|.+.++..+|...|++.++.. | +.| ....
T Consensus 431 DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka 509 (559)
T KOG1155|consen 431 DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKA 509 (559)
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 67788888888888888888888888888755 3455678888888888888888888888776532 1 122 1222
Q ss_pred hHHHHHHhhccCChHHHHHHHHh
Q 036340 470 FASLVDIVGRHGRLEDAMDLIKG 492 (579)
Q Consensus 470 ~~~l~~~~~~~g~~~~A~~~~~~ 492 (579)
..-|+.-+.+.+++++|..+...
T Consensus 510 ~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 510 RLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHhhcchHHHHHHHHH
Confidence 23355556677777776655443
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=6.2e-13 Score=118.48 Aligned_cols=252 Identities=12% Similarity=0.089 Sum_probs=164.5
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCC---CchHHHHHHHHhhhcCC
Q 036340 303 AGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP---DVPINNALITMYARCGA 379 (579)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 379 (579)
.++....+.+++..-.......|..-+...-+....+.....++++|+.+|+.+.+..|- |..+|..++-.-....+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344444456666666666665555544444444445555666677777777664444432 33444444332222111
Q ss_pred HH-HHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHh
Q 036340 380 IV-EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSM 457 (579)
Q Consensus 380 ~~-~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 457 (579)
+. -|..++.-- +-.+.|..++.+-|+-.++.++|+..|++..+ +.|... .|+.+..-|....+...|++.|+.+
T Consensus 315 Ls~LA~~v~~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 LSYLAQNVSNID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHHhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 11 122222211 23345566666777777778888888888774 456554 5666666778888888888888877
Q ss_pred HHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC
Q 036340 458 VNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534 (579)
Q Consensus 458 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 534 (579)
+ .+.| |-..|..|+++|.-.+.+.-|+-+|++. ..+| |+..|.+++.+|.+.++.++|+..|.++......+..
T Consensus 391 v---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 391 V---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred H---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 7 4455 6777888888888888888888888877 4555 6778888888888888888888888888877777777
Q ss_pred CchhhhhhhhhcCCchHHHHHHHHHHh
Q 036340 535 PYVLLYNMYADVGRWDDANEVRLLMKS 561 (579)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (579)
++..|+.+|.+.++.++|...+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 788888888888888888887776554
No 42
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=2.4e-12 Score=113.63 Aligned_cols=351 Identities=15% Similarity=0.172 Sum_probs=200.1
Q ss_pred HHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCC
Q 036340 113 FFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRG 192 (579)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 192 (579)
++-+.......++..++.++++-...+.|.+++++.... ....+..+||.+|.+-.-.. ..+++.+|.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~--k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMi------ 265 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA--KGKVYREAFNGLIGASSYSV----GKKLVAEMI------ 265 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh--hheeeHHhhhhhhhHHHhhc----cHHHHHHHH------
Confidence 444444556677777777777777777787777777665 55666667777776543322 256666776
Q ss_pred CCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHH----hc----CCCChhHHHHHHHHHHhcCChHH-HHHHhhcCC---
Q 036340 193 EGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFE----QM----LERDTFSWNTMISGYIHVLDMEE-ASNLFVKMP--- 260 (579)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----~~----~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~--- 260 (579)
...+.||..|+|+++.+..+.|+++.|.+.+- +| ++|...+|..++..+.+.++..+ +..++.++.
T Consensus 266 --sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 266 --SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred --HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 55667788888888887777777765544433 33 44667777777777777776644 333333322
Q ss_pred ---------CCChhhHHHHHHHHHhcCCHHHHHHHHccCCC--------CC---hhhHHHHHHHHHhCCCchHHHHHHHH
Q 036340 261 ---------HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ--------KN---LVSWNSMIAGCETNKDYEGAIKLFIQ 320 (579)
Q Consensus 261 ---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~ 320 (579)
+.|..-|...+..|.+..+.+.|.++-.-+.. ++ ..-|..+....++....+.-+..|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344555666666677777777766554432 11 11344555666777778888888888
Q ss_pred HHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH-HhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCeee-
Q 036340 321 MQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS- 398 (579)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~- 398 (579)
|+-.-.-|+..+...++++....+.++...+++.. ...|...+......+...+++.. ..|+...
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k-------------~hp~tp~r 490 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK-------------LHPLTPER 490 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC-------------CCCCChHH
Confidence 88777778888888888888888888777777766 44444433333333333333321 1222111
Q ss_pred --HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhH---HH
Q 036340 399 --WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA---SL 473 (579)
Q Consensus 399 --~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l 473 (579)
+.....-++ ..-.+.....-.+|.....+| ...+.++-.+.+.|..++|.+++..+.++.+--|.....+ .+
T Consensus 491 ~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 491 EQLQVAFAKCA-ADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHH-HHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 111111111 011112222223344333333 3334444445666777777777666654433334333334 33
Q ss_pred HHHhhccCChHHHHHHHHhC
Q 036340 474 VDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 474 ~~~~~~~g~~~~A~~~~~~~ 493 (579)
.+.-.+..+...|...++-+
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHH
Confidence 34444566666666666655
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.9e-12 Score=118.49 Aligned_cols=486 Identities=11% Similarity=-0.022 Sum_probs=308.6
Q ss_pred hhHHHHHHHHHHHcCCCCChHHHHHHHhhCC--CCCcchHHHHHHHHHccCCHHHHHHHhhcCC--CCchhhHHHHHHHH
Q 036340 26 VVSWNVMISGYISSRGSGFLEEARYLFDIMP--ERDCVTWNTVISGYAKTGEMEEALRLFNSMP--ARNVVSWNAMISGF 101 (579)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~ 101 (579)
..-+..+++-+..+.+ +..|.-+-+++. ..||...-.++.++.-.|+++.|-.++..-. ..+..+......++
T Consensus 16 ~~~~~~~~r~~l~q~~---y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHR---YKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHHHHHh---hhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 4445566665666666 888888888876 5677777788899999999999988877554 67777877888888
Q ss_pred HhcCChhhHHHHHccCCC-CCcchHHHH--HHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHH
Q 036340 102 LQNGDVANAIEFFDRMPG-RDSASLSAL--VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEA 178 (579)
Q Consensus 102 ~~~~~~~~A~~~~~~~~~-~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 178 (579)
.+..++++|..++..... .++..+... +..+..++.. +.. +.......+..-...|....++++|
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~--------~~~----~~~~essic~lRgk~y~al~n~~~a 160 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAG--------EDL----MINLESSICYLRGKVYVALDNREEA 160 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCccc--------ccc----cccchhceeeeeeehhhhhccHHHH
Confidence 999999999999885411 111111100 0000000000 000 1111122233344455556666777
Q ss_pred HHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHhcCChH
Q 036340 179 RKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER--------DTFSWNTMISGYIHVLDME 250 (579)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~ 250 (579)
...|.++. ..|+..+..+...-.. ..-.+.+.++.+... +......+.........-+
T Consensus 161 r~~Y~~Al------------~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~ 226 (611)
T KOG1173|consen 161 RDKYKEAL------------LADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE 226 (611)
T ss_pred HHHHHHHH------------hcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc
Confidence 77776665 3333333332221110 111111112211111 1111111111110000000
Q ss_pred HHHHHh--hcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHccCCCCCh---hhHHHHHHHHHhCCCchHHHHHHHHHHH
Q 036340 251 EASNLF--VKMP--HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNL---VSWNSMIAGCETNKDYEGAIKLFIQMQV 323 (579)
Q Consensus 251 ~a~~~~--~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (579)
.....- ..+. ..++.......+-+...+++.+..++++.+.+.++ ..+..-|.++...|+..+-..+=.++++
T Consensus 227 ~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~ 306 (611)
T KOG1173|consen 227 ESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD 306 (611)
T ss_pred cccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 000000 0000 34455555566677788888988888888876443 3455556677888888887777777776
Q ss_pred cCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHH
Q 036340 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNA 401 (579)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~ 401 (579)
.- +-...+|-.+..-|...|+...|++++.+...-.+.-...|..++..|.-.|..++|...+.... .+..-..+.-
T Consensus 307 ~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY 385 (611)
T KOG1173|consen 307 LY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY 385 (611)
T ss_pred hC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH
Confidence 53 33566777777777778899999999888666666666778888899999999999998887653 1222233444
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhC-CCC----CcchhHHHHH
Q 036340 402 MIGGCASHGFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYG-IEP----RIEHFASLVD 475 (579)
Q Consensus 402 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~~l~~ 475 (579)
+.--|.+.++.+.|.++|.+.. ++.|+.. .++.+.-.....+.+.+|..+|+..+.... ..+ ...+++.|+.
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 5556788899999999999988 6777554 777777777888999999999988763211 111 3356788999
Q ss_pred HhhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhh
Q 036340 476 IVGRHGRLEDAMDLIKGM-PFE-PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543 (579)
Q Consensus 476 ~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 543 (579)
++.+.+.+++|+..+++. ... .+..++..++-.+...|+++.|+..|.+++.+.|++..+-..|..+.
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999999999999999987 333 48889999999999999999999999999999999976555554433
No 44
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=5.2e-12 Score=111.58 Aligned_cols=348 Identities=12% Similarity=0.170 Sum_probs=229.8
Q ss_pred HhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCCC----CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCC
Q 036340 82 LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGED 157 (579)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 157 (579)
++-+..+....++..+|.++++-...+.|.+++++.... +..+++.++.+-.-. .-.+++.+|... ...|
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisq--km~P 271 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQ--KMTP 271 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHh--hcCC
Confidence 445555677889999999999999999999999998653 556677776654432 226777788776 7899
Q ss_pred chhhHHHHHHHHhhCCCHHH----HHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHH-HHHHHHhcC---
Q 036340 158 LVRAYNTLIVGYGQRGRVEE----ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS-AREIFEQML--- 229 (579)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~--- 229 (579)
+..++|+++.+..+.|+++. |.+++.+|. +.|+.|...+|..++..+.+.++..+ +..++..+.
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmK--------eiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMK--------EIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHH--------HhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 99999999999999998876 456777777 78999999999999999999888754 344444331
Q ss_pred -----C---C-ChhHHHHHHHHHHhcCChHHHHHHhhcCC--------CCC---hhhHHHHHHHHHhcCCHHHHHHHHcc
Q 036340 230 -----E---R-DTFSWNTMISGYIHVLDMEEASNLFVKMP--------HPD---TLTWNAMVSGYAQIGNLELALDFFKR 289 (579)
Q Consensus 230 -----~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (579)
+ | |...|...+..|.+..+.+-|.++..-.. .|+ ...|..+....+.....+.-..+|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 55667888888889999888887765544 233 23567777888888899999999999
Q ss_pred CCC----CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCch
Q 036340 290 MPQ----KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVP 365 (579)
Q Consensus 290 ~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 365 (579)
+.. |+..+...++.+....|.++-.-+++..++..|..-.......++..+++ ....|+..
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~---------------~k~hp~tp 488 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR---------------DKLHPLTP 488 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc---------------CCCCCCCh
Confidence 885 77778888888888889999999999988877644333332222222221 11112111
Q ss_pred HHHHHHHHhhhc-CCHHH-HHHHHHhcc-CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCC-CCCChhh---HHHHH
Q 036340 366 INNALITMYARC-GAIVE-ARIIFEEMK-LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK-VLPTYIT---FISVL 438 (579)
Q Consensus 366 ~~~~l~~~~~~~-~~~~~-A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~---~~~l~ 438 (579)
....+-....++ -++.+ .+..-..+. ........+.+.-.+.+.|..++|.+++..+.+.+ --|.... ...++
T Consensus 489 ~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~ 568 (625)
T KOG4422|consen 489 EREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELM 568 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHH
Confidence 111111111110 00111 111111111 23344455666666777777777777777774433 2232223 33455
Q ss_pred HHhcccCcHHHHHHHHHHhH
Q 036340 439 SACAHAGLVEEGRQHFKSMV 458 (579)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~ 458 (579)
..-...+....|..+++-+.
T Consensus 569 d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 569 DSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 55566677777777777664
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=2.9e-13 Score=128.76 Aligned_cols=276 Identities=10% Similarity=0.041 Sum_probs=183.0
Q ss_pred cCCHHHHHHHHccCCCC--ChhhHHHH-HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHH--HHHHhccCCCchhhHHH
Q 036340 277 IGNLELALDFFKRMPQK--NLVSWNSM-IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS--SILSMSSGIVDLHLGMQ 351 (579)
Q Consensus 277 ~g~~~~A~~~~~~~~~~--~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 351 (579)
.|+++.|++.+....+. ++..+..+ .....+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666654431 22222222 33335667777777777776553 33332222 22445666777777777
Q ss_pred HHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhccC--CCCee--------eHHHHHHHHHhcCChHHHHHHHHH
Q 036340 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKL--LKNVV--------SWNAMIGGCASHGFATEALELFKS 421 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~ 421 (579)
.++......|.++.+...+...|.+.|++++|.+++..+.. ..+.. .|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 77776566666777778888888888888888888887751 11111 222333333344555666677776
Q ss_pred hHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CH
Q 036340 422 MRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DK 499 (579)
Q Consensus 422 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~ 499 (579)
+.+. .+.+......+...+...|+.++|.+.+++..+. +|+..... +.+....++.+++++.++.. +..| |+
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 6542 2345567778888888999999999998888753 44543332 23334558888888888877 3444 56
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHh
Q 036340 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561 (579)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (579)
..+..+.+.+...+++++|...|+++.+..|++.. +..|+.++.+.|+.++|..++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67778888899999999999999999999988654 67888999999999999999887643
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=5.9e-13 Score=113.12 Aligned_cols=263 Identities=14% Similarity=0.145 Sum_probs=183.0
Q ss_pred hcCCHHHHHHHHHhcCCCChhHH---HHHHHHHHhcCChHHHHHHhhcCC-CCChh------hHHHHHHHHHhcCCHHHH
Q 036340 214 KAGDVVSAREIFEQMLERDTFSW---NTMISGYIHVLDMEEASNLFVKMP-HPDTL------TWNAMVSGYAQIGNLELA 283 (579)
Q Consensus 214 ~~~~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~------~~~~l~~~~~~~g~~~~A 283 (579)
-+++.++|.+.|-+|.+.|+.++ .++.+.|.+.|..+.|+++.+.+. .||.. ....|..-|...|-+|.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45678899999999988766554 457788888888888888888877 55532 345566778888888888
Q ss_pred HHHHccCCCCC---hhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcC
Q 036340 284 LDFFKRMPQKN---LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360 (579)
Q Consensus 284 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 360 (579)
+++|..+.+.+ ......|+..|-...+|++|++.-+++.+.+..+...-.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---------------------------
Confidence 88888887633 345667788888888888888888888776544332211
Q ss_pred CCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 036340 361 IPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVL 438 (579)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 438 (579)
...|..+...+....+.+.|..++.+.. .+..+..-..+.+.....|+++.|++.++...+....--..+...|.
T Consensus 180 ---AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 180 ---AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred ---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 1234456666666778888888887764 23344555567777888888888888888888764333344677777
Q ss_pred HHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 036340 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI-KGMPFEPDKAVWGALLGAC 509 (579)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~ 509 (579)
.+|...|+.++...++..+.+. .+.......+.+......-.+.|..++ +.+.-+|+...+..++..-
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 8888888888888888887743 455555555555555555555555544 4446677777777777553
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=5.8e-13 Score=126.71 Aligned_cols=283 Identities=8% Similarity=-0.018 Sum_probs=197.4
Q ss_pred hcCCHHHHHHHHHhcCCC--ChhH-HHHHHHHHHhcCChHHHHHHhhcCC--CCChhhHH--HHHHHHHhcCCHHHHHHH
Q 036340 214 KAGDVVSAREIFEQMLER--DTFS-WNTMISGYIHVLDMEEASNLFVKMP--HPDTLTWN--AMVSGYAQIGNLELALDF 286 (579)
Q Consensus 214 ~~~~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~--~l~~~~~~~g~~~~A~~~ 286 (579)
-.|+++.|++.+....+. ++.. +........+.|+++.|...+.++. .|+..... .....+...|+++.|...
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 368999999888876543 2333 3333445578888999998888887 44443332 335678888899998888
Q ss_pred HccCCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCC
Q 036340 287 FKRMPQ---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363 (579)
Q Consensus 287 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 363 (579)
++++.+ .++.....+...|.+.|++++|.+++..+.+.+..++. ....+-.
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------- 229 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ------------------------- 229 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-------------------------
Confidence 888775 34556777888888889999999888888877654222 1111100
Q ss_pred chHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHh
Q 036340 364 VPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441 (579)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 441 (579)
..+..++.......+.+...++++.+. .+.++.....+...+...|+.++|.+++++..+. +|+.... ++.+.
T Consensus 230 -~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~ 304 (398)
T PRK10747 230 -QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPR 304 (398)
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhh
Confidence 011222333333344556666666664 3446667778888888899999999999888863 4554322 23344
Q ss_pred cccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 036340 442 AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPDKAVWGALLGACRVHNNVELAQV 520 (579)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 520 (579)
...++.+++.+..+...+. .+.|+..+..++..+.+.|++++|.+.|+.. ...|+...+..+..++.+.|+.++|..
T Consensus 305 l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred ccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4568889999998888764 2345667788889999999999999999887 667888888888899999999999999
Q ss_pred HHHHHhhcC
Q 036340 521 AAEALMKVE 529 (579)
Q Consensus 521 ~~~~~~~~~ 529 (579)
.|++.+.+.
T Consensus 383 ~~~~~l~~~ 391 (398)
T PRK10747 383 MRRDGLMLT 391 (398)
T ss_pred HHHHHHhhh
Confidence 999887654
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=2.7e-14 Score=133.08 Aligned_cols=247 Identities=13% Similarity=0.129 Sum_probs=198.8
Q ss_pred CCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCC---CCchHHHHHHHHhhhcCCHH-HHH
Q 036340 309 KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI---PDVPINNALITMYARCGAIV-EAR 384 (579)
Q Consensus 309 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~-~A~ 384 (579)
-+..+|+..|.+.... +.-.......+..+|...++++++..+|+.+.+..+ .+..+|...+-.+.+.-... -|.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 4578899999984443 333447777788899999999999999998554443 46677777665554321111 122
Q ss_pred HHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCC
Q 036340 385 IIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463 (579)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 463 (579)
.+.+.. +..+.+|.+++.+|.-+++.+.|++.|++.+ .+.|+ ..+|+.+..-+.....+|.|...|+..+ ++
T Consensus 412 ~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAi--Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~ 484 (638)
T KOG1126|consen 412 DLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAI--QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GV 484 (638)
T ss_pred HHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhh--ccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cC
Confidence 233332 4567899999999999999999999999999 46784 5589988888899999999999999887 45
Q ss_pred CC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhh
Q 036340 464 EP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540 (579)
Q Consensus 464 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 540 (579)
.| +-..|..++..|.++++++.|+-.|+++ .+.| +.+....++..+.+.|+.++|+.+++++..++|.|+..-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 55 3456667888999999999999999998 6667 6677788888899999999999999999999999999999999
Q ss_pred hhhhhcCCchHHHHHHHHHHhCC
Q 036340 541 NMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 541 ~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
.++...+++++|+..++++++.-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhC
Confidence 99999999999999999998654
No 49
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.9e-11 Score=112.67 Aligned_cols=433 Identities=12% Similarity=0.126 Sum_probs=225.8
Q ss_pred HHHHhcCChhhHHHHHccCCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCH
Q 036340 99 SGFLQNGDVANAIEFFDRMPG---RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175 (579)
Q Consensus 99 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 175 (579)
+.+...|++++|.....++.. .+...+.+-+-++.+.+++++|+.+.+.-.. .......+.--+.+..+.+..
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~----~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA----LLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch----hhhcchhhHHHHHHHHHcccH
Confidence 344455555555555555443 2334455555555666666666644443211 011111112223344456666
Q ss_pred HHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHH-HhcCChHHHHH
Q 036340 176 EEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY-IHVLDMEEASN 254 (579)
Q Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~ 254 (579)
++|...++-.. +.+..+...-...+.+.|++++|.++|+.+.+.+...+..-+.+- ...+.-..+-
T Consensus 96 Dealk~~~~~~------------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~- 162 (652)
T KOG2376|consen 96 DEALKTLKGLD------------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ- 162 (652)
T ss_pred HHHHHHHhccc------------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-
Confidence 66666665332 222334444555566666666666666666554433332222211 1111111111
Q ss_pred HhhcCC-CC--ChhhHHHHHHHHHhcCCHHHHHHHHccCC--------CCCh----------hhHHHHHHHHHhCCCchH
Q 036340 255 LFVKMP-HP--DTLTWNAMVSGYAQIGNLELALDFFKRMP--------QKNL----------VSWNSMIAGCETNKDYEG 313 (579)
Q Consensus 255 ~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~----------~~~~~l~~~~~~~~~~~~ 313 (579)
+.+... .| +-..+......+...|++.+|+++++... +.|. ..--.|...+...|+..+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 122221 11 11122223344566677777777776651 1110 012234455667788888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHH---HHhccCCCchhh--HHHHHHH------------HhhcCCCCchHHHHHHHHhhh
Q 036340 314 AIKLFIQMQVEGEKPDRHTFSSI---LSMSSGIVDLHL--GMQIHQM------------VTKTVIPDVPINNALITMYAR 376 (579)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~--a~~~~~~------------~~~~~~~~~~~~~~l~~~~~~ 376 (579)
|..+|...++... +|......+ +-+...-.++-. ....++. ..+........-+.++.+|
T Consensus 243 a~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~-- 319 (652)
T KOG2376|consen 243 ASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF-- 319 (652)
T ss_pred HHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 8888888776643 233222211 122222222111 1111111 1111111111122333333
Q ss_pred cCCHHHHHHHHHhcc-CCCCeeeHHHHHHHHH--hcCChHHHHHHHHHhHhCCCCCCh--hhHHHHHHHhcccCcHHHHH
Q 036340 377 CGAIVEARIIFEEMK-LLKNVVSWNAMIGGCA--SHGFATEALELFKSMRSFKVLPTY--ITFISVLSACAHAGLVEEGR 451 (579)
Q Consensus 377 ~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~ 451 (579)
.+..+.+.++-..+. ..|. ..+.+++.... +...+..+.+++....+. .|.. ......+.....+|+++.|.
T Consensus 320 tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred hhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 355666777666665 2222 23444444332 233577888888887753 3433 35556667788999999999
Q ss_pred HHHH--------HhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-----CCCCCHH----HHHHHHHHHhhcCC
Q 036340 452 QHFK--------SMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-----PFEPDKA----VWGALLGACRVHNN 514 (579)
Q Consensus 452 ~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~----~~~~l~~~~~~~~~ 514 (579)
+++. .+. .+...+.+...+...+.+.++.+.|..++.+. ...+... ++..++..-.++|+
T Consensus 397 ~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 397 EILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 9998 443 22334566677778888888888777777665 1112222 33333344456799
Q ss_pred HHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHH
Q 036340 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558 (579)
Q Consensus 515 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 558 (579)
.++|..+++++.+.+|++...+..++.+|.... .+.|..+-+.
T Consensus 474 ~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred hHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 999999999999999999999999998887764 5666666443
No 50
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=8.3e-11 Score=101.52 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=35.6
Q ss_pred hHHHHHHHhhCCC----CCcchHHHHHHHHHccCCHHHHHHHhhcCC---CCchhhHHHHHHHHHhcCChhhHHHHHccC
Q 036340 45 LEEARYLFDIMPE----RDCVTWNTVISGYAKTGEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRM 117 (579)
Q Consensus 45 ~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 117 (579)
+.-|+.+++--.. ....+-..+..++.+.|++++|...+.-+. .++...+-.|.-++.-.|.+.+|..+-...
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 5555555544331 111223344445555566666666555444 233444444555555555555655555443
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=2.2e-14 Score=130.53 Aligned_cols=248 Identities=17% Similarity=0.162 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-C---C-ChhHHHHHHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHHHhcC
Q 036340 207 SMIMCYAKAGDVVSAREIFEQML-E---R-DTFSWNTMISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGYAQIG 278 (579)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~~-~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g 278 (579)
.+...+.+.|++++|++++++.. . + |+..|..+.......++++.|...++++. +.++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 56788888999999999985432 2 1 44445556666667777777777777776 2233455555555 5677
Q ss_pred CHHHHHHHHccCCC--CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcC-CCCChhhHHHHHHhccCCCchhhHHHHHHH
Q 036340 279 NLELALDFFKRMPQ--KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG-EKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355 (579)
Q Consensus 279 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 355 (579)
++++|.+++...-+ +++..+..++..+...++++++..+++++.... ..++...|......+.+.|+.+.|...++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777766543 455556666677777777777777777765432 123344444444444555555555555555
Q ss_pred HhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC-Chh
Q 036340 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP-TYI 432 (579)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~ 432 (579)
.....|.+..+...++..+...|+.+++.+++.... .+.|+..+..+..++...|++++|+.+|++..+. .| |..
T Consensus 172 al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~ 249 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPL 249 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--cccccc
Confidence 444444445555555555555555555444444432 1233344444555555555555555555554432 22 333
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHh
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSM 457 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~ 457 (579)
....+..++...|+.++|.++.+++
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 4444444555555555555544443
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=2.5e-12 Score=123.19 Aligned_cols=278 Identities=12% Similarity=-0.008 Sum_probs=139.2
Q ss_pred cCCHHHHHHHHccCCC--CChh-hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChh--hHHHHHHhccCCCchhhHHH
Q 036340 277 IGNLELALDFFKRMPQ--KNLV-SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRH--TFSSILSMSSGIVDLHLGMQ 351 (579)
Q Consensus 277 ~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~ 351 (579)
.|+++.|.+.+.+..+ |++. .+-....+....|+++.|...+.+..+.. |+.. ........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555555544332 2211 12222334444455555555555544322 2221 12222344444555555555
Q ss_pred HHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhccC--CCCeeeHH----HHHHHHHhcCChHHHHHHHHHhHhC
Q 036340 352 IHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKL--LKNVVSWN----AMIGGCASHGFATEALELFKSMRSF 425 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~ 425 (579)
.++......|.++.+...+...+...|++++|.+.+..+.. ..+...+. .........+..+++.+.+..+.+.
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55554444444555556666666666666666666665541 11222121 1111112222222233344443332
Q ss_pred CC---CCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcch---hHHHHHHhhccCChHHHHHHHHhC-CCCC-
Q 036340 426 KV---LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH---FASLVDIVGRHGRLEDAMDLIKGM-PFEP- 497 (579)
Q Consensus 426 ~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~~- 497 (579)
.. +.+...+..+...+...|+.++|.+.+++.++. .|+... ...........++.+.+.+.+++. ...|
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 11 124456666666777777777777777777653 333221 111111222345666666666655 2333
Q ss_pred CH--HHHHHHHHHHhhcCCHHHHHHHHH--HHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 498 DK--AVWGALLGACRVHNNVELAQVAAE--ALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 498 ~~--~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
|+ .....+++.+.+.|++++|.+.|+ .+.+..|++.. +..++.++.+.|+.++|.+++++..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 455667777777777777777777 45556666544 5577777777777777777777643
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.55 E-value=2.3e-10 Score=106.58 Aligned_cols=510 Identities=13% Similarity=0.154 Sum_probs=293.1
Q ss_pred hhHHHHHHHHHHHcCCCCChHHHHHHHhhCC-----CCCcchHHHHHHHHHccCCHHHHHHHhhcCCCCchhhHHHHHHH
Q 036340 26 VVSWNVMISGYISSRGSGFLEEARYLFDIMP-----ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISG 100 (579)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 100 (579)
|..|...+.....+++ ....+..|+..+ .....+|...+......|-.+-++.++++..+.++..-+-.+..
T Consensus 102 pRIwl~Ylq~l~~Q~~---iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~ 178 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGL---ITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEY 178 (835)
T ss_pred CHHHHHHHHHHHhcch---HHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4566666777777777 888888877765 23445788888888888888899999999887777777888888
Q ss_pred HHhcCChhhHHHHHccCCCC----------CcchHHHHHHHHHhCCCHH---HHHHHHHHhccCCCCCCCchhhHHHHHH
Q 036340 101 FLQNGDVANAIEFFDRMPGR----------DSASLSALVSGLIQNGELD---EAARVLVKCGSRCDGGEDLVRAYNTLIV 167 (579)
Q Consensus 101 ~~~~~~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 167 (579)
+.+.+++++|.+.+...... +...|..+.....+.-+.- ....+++.+..+ -...-...|.+|+.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 99999999999888887642 3334555555555443322 234455555543 22333457889999
Q ss_pred HHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhc----------------C------CHHHHHHHH
Q 036340 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA----------------G------DVVSAREIF 225 (579)
Q Consensus 168 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~A~~~~ 225 (579)
.|.+.|.+++|..+|++.... ..+..-+..+.++|+.- | +++-.+..|
T Consensus 257 YYIr~g~~ekarDvyeeai~~----------v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT----------VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh----------heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 999999999999999987622 12222233333333221 1 122333344
Q ss_pred HhcCCC---------------ChhHHHHHHHHHHhcCChHHHHHHhhcCC---CC------ChhhHHHHHHHHHhcCCHH
Q 036340 226 EQMLER---------------DTFSWNTMISGYIHVLDMEEASNLFVKMP---HP------DTLTWNAMVSGYAQIGNLE 281 (579)
Q Consensus 226 ~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~------~~~~~~~l~~~~~~~g~~~ 281 (579)
+.+.+. ++..|..-+ -+..|+..+-+..|.++. .| -...|..+...|-..|+++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 444332 112222222 223455666666665554 11 1235778888899999999
Q ss_pred HHHHHHccCCCCChh-------hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC-----------------hhhHHHHH
Q 036340 282 LALDFFKRMPQKNLV-------SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD-----------------RHTFSSIL 337 (579)
Q Consensus 282 ~A~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~l~ 337 (579)
.|..+|++..+-+-. +|..-...-.+..+++.|+++++......-.|. ...|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 999999998874433 344444444566778888888777643211111 11222222
Q ss_pred HhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc---CCCCe-eeHHHHHHHHHh---cC
Q 036340 338 SMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK---LLKNV-VSWNAMIGGCAS---HG 410 (579)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~-~~~~~l~~~~~~---~~ 410 (579)
...-..|-++.-..+++.+-.--.-++.+....+..+....-++++.++|+.-. ..|++ ..|+..+..+.+ ..
T Consensus 485 DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC
Confidence 222334445555555555222222233333334444555566788888887642 23443 257766666554 34
Q ss_pred ChHHHHHHHHHhHhCCCCCChhhHHHHHH--HhcccCcHHHHHHHHHHhHHhhCCCCC--cchhHHHHHHhhccCChHHH
Q 036340 411 FATEALELFKSMRSFKVLPTYITFISVLS--ACAHAGLVEEGRQHFKSMVNEYGIEPR--IEHFASLVDIVGRHGRLEDA 486 (579)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 486 (579)
..+.|..+|++.++ |.+|...-+..|+. .-.+-|-...|+.+++++.. ++++. ...|+.++.--...=-+...
T Consensus 565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~T 641 (835)
T KOG2047|consen 565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRT 641 (835)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 68889999999888 77776553222222 22345777888888888754 44442 34455444322111112222
Q ss_pred HHHHHhC-CCCCCHHHHHH---HHHHHhhcCCHHHHHHHHHHHhhcCCCC--CCCchhhhhhhhhcCCchHHHHH
Q 036340 487 MDLIKGM-PFEPDKAVWGA---LLGACRVHNNVELAQVAAEALMKVEPEN--STPYVLLYNMYADVGRWDDANEV 555 (579)
Q Consensus 487 ~~~~~~~-~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~ 555 (579)
..+++++ ..-|+...-.. ....-.+.|..++|..+|...-++.|.. ...|...-..-.+.|+-+.-.+.
T Consensus 642 R~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 642 REIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 3333333 12244333322 3344457788888888888777765442 33466665666677774433333
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=2.7e-11 Score=116.11 Aligned_cols=145 Identities=14% Similarity=0.072 Sum_probs=79.3
Q ss_pred HHHHHHHHccCCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHH-HHHHhccCCCchhhHHHHHHH
Q 036340 280 LELALDFFKRMPQ---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS-SILSMSSGIVDLHLGMQIHQM 355 (579)
Q Consensus 280 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~ 355 (579)
.+.....+....+ .++..+..++..+...|++++|.+.+++..+.. ||..... .++..+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~--------------- 307 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPI--------------- 307 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHh---------------
Confidence 3444555555543 367777888888888888888888888887753 3322110 011100
Q ss_pred HhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCC-e--eeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh
Q 036340 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLKN-V--VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431 (579)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 431 (579)
.....++.+.+.+.++... ..|+ + ....++...+.+.|++++|.+.|+........|+.
T Consensus 308 -----------------~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 308 -----------------PRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred -----------------hhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 1111233344444444332 2222 2 33445666666666666666666643332345666
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhH
Q 036340 432 ITFISVLSACAHAGLVEEGRQHFKSMV 458 (579)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 458 (579)
..+..+...+.+.|+.++|.++|++..
T Consensus 371 ~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 371 NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666666666666666543
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=7.7e-10 Score=103.18 Aligned_cols=508 Identities=15% Similarity=0.158 Sum_probs=323.7
Q ss_pred hhhhcCCCHHHHHHHhccCCC-----CchhHHHHHHHHHHHcCCCCChHHHHHHHhhCCCCCcchHHHHHHHHHccCCHH
Q 036340 3 SGYVKRREMAKARKLFDEMPQ-----RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEME 77 (579)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 77 (579)
+.+.++|+...-+..|++++. .....|...+.-.-..+. ++-+..+++.-++-+|..-+-.+..+...++++
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~l---Pets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGL---PETSIRVYRRYLKVAPEAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCC---hHHHHHHHHHHHhcCHHHHHHHHHHHHhccchH
Confidence 456788999999999999875 355678888877777777 899999999999888888889999999999999
Q ss_pred HHHHHhhcCCC----------CchhhHHHHHHHHHhcCC---hhhHHHHHccCCCC----CcchHHHHHHHHHhCCCHHH
Q 036340 78 EALRLFNSMPA----------RNVVSWNAMISGFLQNGD---VANAIEFFDRMPGR----DSASLSALVSGLIQNGELDE 140 (579)
Q Consensus 78 ~A~~~~~~~~~----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~ 140 (579)
+|-+.+..... .+...|..+-+...++-+ --....+++.+... -...|..|+.-|.+.|.++.
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 99999998872 233456666665555433 22344555555542 23568889999999999999
Q ss_pred HHHHHHHhccCCCCCCCchhhHHHHHHHHhhCC----------------------CHHHHHHHHccccccCCCCCCC---
Q 036340 141 AARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG----------------------RVEEARKLFDKIPVNCDRGEGN--- 195 (579)
Q Consensus 141 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~~~~~~~~~--- 195 (579)
|.++|++.+.. .....-|..+...|.... +++-...-|+.+....+.....
T Consensus 267 arDvyeeai~~----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 267 ARDVYEEAIQT----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHHh----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999998774 222333444444444321 1112222222222000000000
Q ss_pred ccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C--------hhHHHHHHHHHHhcCChHHHHHHhhcCCCCC---
Q 036340 196 VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-D--------TFSWNTMISGYIHVLDMEEASNLFVKMPHPD--- 263 (579)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 263 (579)
..-+.+...|..-+. +..|+..+-...|.+++.. | ...|..+.+.|-..|+.+.|..+|++..+.+
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 000122223322222 2346666677777766432 1 2358889999999999999999999998332
Q ss_pred ----hhhHHHHHHHHHhcCCHHHHHHHHccCCC---------------------CChhhHHHHHHHHHhCCCchHHHHHH
Q 036340 264 ----TLTWNAMVSGYAQIGNLELALDFFKRMPQ---------------------KNLVSWNSMIAGCETNKDYEGAIKLF 318 (579)
Q Consensus 264 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (579)
..+|......-.+..+++.|.++++.... ++...|...+..--..|-++....+|
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 23555566666678889999999887653 12335666666667778999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCC-CC-chHHHHHHHHhhh---cCCHHHHHHHHHhcc-C
Q 036340 319 IQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PD-VPINNALITMYAR---CGAIVEARIIFEEMK-L 392 (579)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~l~~~~~~---~~~~~~A~~~~~~~~-~ 392 (579)
+++++..+.. +.........+.....++.+.++++..-.-++ |+ -.+|+..+.-+.+ ..+++.|..+|++.. .
T Consensus 501 driidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 501 DRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG 579 (835)
T ss_pred HHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 9998876542 22222233334455667777777777333332 33 2345544433332 347899999999875 2
Q ss_pred CCCeeeHHHHHHHHH----hcCChHHHHHHHHHhHhCCCCCChh--hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC
Q 036340 393 LKNVVSWNAMIGGCA----SHGFATEALELFKSMRSFKVLPTYI--TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466 (579)
Q Consensus 393 ~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 466 (579)
-| +.....+.-.|+ ..|-...|+.++++... ++.+... .|+..|.--...=.+.....+|+++++...-...
T Consensus 580 Cp-p~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~ 657 (835)
T KOG2047|consen 580 CP-PEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKA 657 (835)
T ss_pred CC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHH
Confidence 23 222222222233 45888899999999775 4555443 7888777444444455667788888764221122
Q ss_pred cchhHHHHHHhhccCChHHHHHHHHhCC--CCC--CHHHHHHHHHHHhhcCCHHHHHHHH
Q 036340 467 IEHFASLVDIVGRHGRLEDAMDLIKGMP--FEP--DKAVWGALLGACRVHNNVELAQVAA 522 (579)
Q Consensus 467 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~A~~~~ 522 (579)
.......++.-.+.|..+.|..++.-.. .+| +...|...-.--.++|+-+.-.+++
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3445566777789999999999987662 234 5667777766667888854444443
No 56
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=2.4e-09 Score=102.64 Aligned_cols=453 Identities=16% Similarity=0.180 Sum_probs=210.6
Q ss_pred hHHHHHHHhhCCCCCcchHHHHHHHHHccCCHHHHHHHhhcCCCCc-hhhHHHHHHHHHhcCChhhHHHHHccCCCC---
Q 036340 45 LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARN-VVSWNAMISGFLQNGDVANAIEFFDRMPGR--- 120 (579)
Q Consensus 45 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 120 (579)
+++|+.+|++-.+ |..|=+.|...|.+++|.++-+.-..-. ..+|......+-..+|.+.|++.|++...+
T Consensus 816 lEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafe 890 (1416)
T KOG3617|consen 816 LEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFE 890 (1416)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHH
Confidence 5666665555432 3344445555566666666554332211 124444445555556666666666554221
Q ss_pred --------------------CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHH
Q 036340 121 --------------------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180 (579)
Q Consensus 121 --------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 180 (579)
|...|.-..+-+-..|+.+.|+.+|..+.. |..++...|-+|+.++|-+
T Consensus 891 v~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C~qGk~~kAa~ 959 (1416)
T KOG3617|consen 891 VFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKCIQGKTDKAAR 959 (1416)
T ss_pred HHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEeeccCchHHHH
Confidence 222222222333345555555555554332 4445555555555555555
Q ss_pred HHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC-------------
Q 036340 181 LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL------------- 247 (579)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~------------- 247 (579)
+-++- -|......+.+.|-..|++.+|..+|.+. .++.+.|+.|-.++
T Consensus 960 iA~es--------------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA-----qafsnAIRlcKEnd~~d~L~nlal~s~ 1020 (1416)
T KOG3617|consen 960 IAEES--------------GDKAACYHLARMYENDGDVVKAVKFFTRA-----QAFSNAIRLCKENDMKDRLANLALMSG 1020 (1416)
T ss_pred HHHhc--------------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH-----HHHHHHHHHHHhcCHHHHHHHHHhhcC
Confidence 55443 24445556666666667766666666554 22222222221111
Q ss_pred --ChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHccCCC--------------CChhhHHHHHHHHHhCCCc
Q 036340 248 --DMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ--------------KNLVSWNSMIAGCETNKDY 311 (579)
Q Consensus 248 --~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~ 311 (579)
+.-.|-++|++.. .-+...+..|.+.|.+.+|+++--+-.+ .|+...+.-...++...++
T Consensus 1021 ~~d~v~aArYyEe~g----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qy 1096 (1416)
T KOG3617|consen 1021 GSDLVSAARYYEELG----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQY 1096 (1416)
T ss_pred chhHHHHHHHHHHcc----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHH
Confidence 1122223333221 0111223345555555555554332222 2344445555556666666
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH--HhhcCCCC----chHHHHHHHHhhhcCCHHHHHH
Q 036340 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM--VTKTVIPD----VPINNALITMYARCGAIVEARI 385 (579)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~ 385 (579)
++|..++-...+ |...+..|...+ +..-.++-++ ..+...|+ ..+...+...+.+.|.+..|-+
T Consensus 1097 ekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1097 EKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 666666544432 222333332222 2222222222 11212222 2345567777788888888877
Q ss_pred HHHhccCCCCeeeHHHHHHHHHhcCChHHH----------------HHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHH
Q 036340 386 IFEEMKLLKNVVSWNAMIGGCASHGFATEA----------------LELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449 (579)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A----------------~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 449 (579)
-|.+...+ ...++++.+.|+.++. -.+++. ...+.++.+...++..|.+...++.
T Consensus 1167 KfTQAGdK------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQt---lDWq~~pq~mK~I~tFYTKgqafd~ 1237 (1416)
T KOG3617|consen 1167 KFTQAGDK------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQT---LDWQDNPQTMKDIETFYTKGQAFDH 1237 (1416)
T ss_pred HHhhhhhH------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhh---cccccChHHHhhhHhhhhcchhHHH
Confidence 77665411 2345556666654441 122221 1344455555555555555544554
Q ss_pred HHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCC-HHHHHHH----------HHHHh-hcCCHHH
Q 036340 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPD-KAVWGAL----------LGACR-VHNNVEL 517 (579)
Q Consensus 450 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l----------~~~~~-~~~~~~~ 517 (579)
--.+|....+ ...+-|..+-. ..|-.++|...+.++..+.+ ...++.| ++... -..|..+
T Consensus 1238 LanFY~~cAq-----iEiee~q~ydK---a~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~ 1309 (1416)
T KOG3617|consen 1238 LANFYKSCAQ-----IEIEELQTYDK---AMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAAD 1309 (1416)
T ss_pred HHHHHHHHHH-----hhHHHHhhhhH---HhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4444443321 01111211111 12334455555544432211 1122222 22211 1224555
Q ss_pred HHHHHHHHhhcCCCCC------CCchhhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 518 AQVAAEALMKVEPENS------TPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 518 A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
.+...+.+++ .|..+ ..+..|+..|....+|..|.+.+++|.++..
T Consensus 1310 ~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1310 GIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred HHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence 5555554443 23332 2367788888999999999999999876553
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=2.5e-10 Score=98.67 Aligned_cols=463 Identities=12% Similarity=0.063 Sum_probs=234.2
Q ss_pred HHHHHccCCHHHHHHHhhcCCCC---ch-hhHHHHHHHHHhcCChhhHHHHHccCCC---CCcchHHHHHHHHHhCCCHH
Q 036340 67 ISGYAKTGEMEEALRLFNSMPAR---NV-VSWNAMISGFLQNGDVANAIEFFDRMPG---RDSASLSALVSGLIQNGELD 139 (579)
Q Consensus 67 ~~~~~~~g~~~~A~~~~~~~~~~---~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 139 (579)
+.-+....|+..|+.+++--... .. .+-.-+..++.+.||+++|...+.-+.. ++...+..++-.+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 34445567777777776654411 11 1222234555666777777766665543 23444555555555666666
Q ss_pred HHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHH
Q 036340 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVV 219 (579)
Q Consensus 140 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 219 (579)
+|..+...+.+ ++..-..+.....+.|+-++-..+.+.+. ....--.+|+......-.+.
T Consensus 109 eA~~~~~ka~k-------~pL~~RLlfhlahklndEk~~~~fh~~Lq-------------D~~EdqLSLAsvhYmR~HYQ 168 (557)
T KOG3785|consen 109 EAKSIAEKAPK-------TPLCIRLLFHLAHKLNDEKRILTFHSSLQ-------------DTLEDQLSLASVHYMRMHYQ 168 (557)
T ss_pred HHHHHHhhCCC-------ChHHHHHHHHHHHHhCcHHHHHHHHHHHh-------------hhHHHHHhHHHHHHHHHHHH
Confidence 66666555322 22223334444555566555555555543 11122333444444444566
Q ss_pred HHHHHHHhcCCCChh--HHHH-HHHHHHhcCChHHHHHHhhcCC--CCC-hhhHHHHHHHHHhcCCHHHHHHHHccCCCC
Q 036340 220 SAREIFEQMLERDTF--SWNT-MISGYIHVLDMEEASNLFVKMP--HPD-TLTWNAMVSGYAQIGNLELALDFFKRMPQK 293 (579)
Q Consensus 220 ~A~~~~~~~~~~~~~--~~~~-l~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 293 (579)
+|+++|+.++..++. ..|. +.-+|.+..-++-+.++++... -|| +...+..+....+.=+-..|++-.+.+.+.
T Consensus 169 eAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN 248 (557)
T KOG3785|consen 169 EAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADN 248 (557)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhc
Confidence 677777766554332 2232 2334455555555555554443 233 233333333333322211222222221111
Q ss_pred ChhhHHHHHHHHHhC-----CCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHH-
Q 036340 294 NLVSWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPIN- 367 (579)
Q Consensus 294 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 367 (579)
-...|.. +.-.++. .+-+.|++++--+.+. .|. .-..++--+.+.+++..|..+.+... |.++.-|
T Consensus 249 ~~~~~~f-~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~Eyi 320 (557)
T KOG3785|consen 249 IDQEYPF-IEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYI 320 (557)
T ss_pred ccccchh-HHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcC---CCChHHHH
Confidence 1111111 1111111 2334555555444331 222 22233444667777777766654422 1122222
Q ss_pred ------HHHHHHhhhcCCHHHHHHHHHhcc----CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHH
Q 036340 368 ------NALITMYARCGAIVEARIIFEEMK----LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437 (579)
Q Consensus 368 ------~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 437 (579)
..+..-........-|.+.|.-.. ...+..--.++...+.-..++++.+-.+.....-- ..|..-...+
T Consensus 321 lKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~ 399 (557)
T KOG3785|consen 321 LKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNL 399 (557)
T ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHH
Confidence 222222222233445556665443 12233345566666666677777777777776532 2233333346
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHH-HHHHHhhcCCHH
Q 036340 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA-LLGACRVHNNVE 516 (579)
Q Consensus 438 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~ 516 (579)
..+.+..|.+.+|.++|-.+... .++.+......|+++|.+.++++-|.+++-++..+.+..+... +..-|.+.+++-
T Consensus 400 AQAk~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 400 AQAKLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHHHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888766421 2222333335677888888888888888887764444444444 446688888888
Q ss_pred HHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCCCCc
Q 036340 517 LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569 (579)
Q Consensus 517 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 569 (579)
-|.+.|..+..++|. |..|. |+--....+|..+....-.+.|+
T Consensus 479 yaaKAFd~lE~lDP~-pEnWe---------GKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 479 YAAKAFDELEILDPT-PENWE---------GKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred HHHHhhhHHHccCCC-ccccC---------CccchHHHHHHHHHcCCCCCCch
Confidence 888888888777776 34343 33334456666665544444443
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=5.7e-11 Score=101.29 Aligned_cols=282 Identities=14% Similarity=0.144 Sum_probs=180.8
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHh
Q 036340 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214 (579)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 214 (579)
+.+.++|.+.|-++.+ ..+.+..+..+|++.|.+.|..|.|+.+...+..++ +..+..-..+...|..-|..
T Consensus 48 s~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-----dlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-----DLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-----CCchHHHHHHHHHHHHHHHH
Confidence 5678899999999888 667777888899999999999999999998887321 11222234455667788888
Q ss_pred cCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHhhcCCCCChh--------hHHHHHHHHHhcCCHHHH
Q 036340 215 AGDVVSAREIFEQMLERD---TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL--------TWNAMVSGYAQIGNLELA 283 (579)
Q Consensus 215 ~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A 283 (579)
.|-++.|+.+|..+.+.+ ..+...++..|....+|++|+++-+++.+.+.. .|.-|...+....+.+.|
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999999887743 345667788888888888888877766522222 244445555556677777
Q ss_pred HHHHccCCCCC---hhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcC
Q 036340 284 LDFFKRMPQKN---LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360 (579)
Q Consensus 284 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 360 (579)
..++.+..+.| +..--.+...+...|++..|++.++...+.+..-
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-------------------------------- 247 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY-------------------------------- 247 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH--------------------------------
Confidence 77777766533 2334455566777777777777777776653221
Q ss_pred CCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 036340 361 IPDVPINNALITMYARCGAIVEARIIFEEMK-LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439 (579)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 439 (579)
-+.+...|..+|...|+.++....+..+. ..+++..-..+...-....-.+.|..++.+-.. -.|+...+..++.
T Consensus 248 --l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~ 323 (389)
T COG2956 248 --LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMD 323 (389)
T ss_pred --HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHH
Confidence 12233456667777777777777766653 344444444444444334444555555554443 2577777776766
Q ss_pred Hhc---ccCcHHHHHHHHHHhHHh
Q 036340 440 ACA---HAGLVEEGRQHFKSMVNE 460 (579)
Q Consensus 440 ~~~---~~~~~~~a~~~~~~~~~~ 460 (579)
... ..|...+-...++.|+.+
T Consensus 324 ~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 324 YHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred hhhccccccchhhhHHHHHHHHHH
Confidence 432 233455555556666543
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=7e-11 Score=104.02 Aligned_cols=274 Identities=15% Similarity=0.119 Sum_probs=156.3
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHh
Q 036340 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214 (579)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 214 (579)
.|++..|++.+.+..+. + +.....|..-+.+....||.+.+-.++.++. +..-.++.....+..+....
T Consensus 97 eG~~~qAEkl~~rnae~--~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaa--------e~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH--G-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAA--------ELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred cCcHHHHHHHHHHhhhc--C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHh--------ccCCCchHHHHHHHHHHHHh
Confidence 46666666666665443 1 2223344455555556666666666666665 11113344455555556666
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHhhcCCC-----------CChhhHHHHHHHHHhcCCH
Q 036340 215 AGDVVSAREIFEQMLE---RDTFSWNTMISGYIHVLDMEEASNLFVKMPH-----------PDTLTWNAMVSGYAQIGNL 280 (579)
Q Consensus 215 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~ 280 (579)
.|+++.|..-.+++.+ .++.......++|.+.|++.....++.++.+ -...++..+++-....+..
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 6666666655555543 2444555555666666666666666655541 1123566666655555556
Q ss_pred HHHHHHHccCCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHh
Q 036340 281 ELALDFFKRMPQ---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357 (579)
Q Consensus 281 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 357 (579)
+.-...++...+ .++..-..++.-+...|+.++|.++..+..+.+..|...+ +-.+.+.++...-.+..+...
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHH
Confidence 666667777664 4566777788888899999999999999888877666221 223445555555555555544
Q ss_pred hcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhc-cCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhH
Q 036340 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEM-KLLKNVVSWNAMIGGCASHGFATEALELFKSMR 423 (579)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 423 (579)
+..+.++..+.+|...|.+.+.+.+|...|+.. ...|+..+|+.+..++.+.|+..+|.+..++..
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 444444455555555555555555555555543 244555555555555555555555555555544
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=8.3e-12 Score=111.18 Aligned_cols=199 Identities=11% Similarity=0.050 Sum_probs=163.7
Q ss_pred CchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCC-CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHH
Q 036340 363 DVPINNALITMYARCGAIVEARIIFEEMK-LLK-NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440 (579)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 440 (579)
....+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 35567778889999999999999998864 233 45677888889999999999999999998653 3344577778888
Q ss_pred hcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH
Q 036340 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELA 518 (579)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A 518 (579)
+...|++++|.+.+++++...........+..++.++...|++++|...+.+. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999764222224556778889999999999999999887 3334 566788888999999999999
Q ss_pred HHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhC
Q 036340 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562 (579)
Q Consensus 519 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (579)
...++++.+..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888888999999999999999998887643
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=8.3e-12 Score=106.35 Aligned_cols=238 Identities=12% Similarity=0.022 Sum_probs=160.5
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcC
Q 036340 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCG 378 (579)
Q Consensus 299 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 378 (579)
+.+..+|.+.|.+.+|...++...+. .|-..||..+-++|.+..++..|..++......+|.++.....+.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 44566666667777776666665554 3444456556666666666666666666655556666666666777788888
Q ss_pred CHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHH
Q 036340 379 AIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456 (579)
Q Consensus 379 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 456 (579)
+.++|.++|+... .+.++.....+...|.-.++++-|+.+++++.+.|+ -+...|+.+.-+|...+++|-++..|++
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 8888888888764 234566666667777778888888888888888774 3456777777788888888888888887
Q ss_pred hHHhhCCCCC--cchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC
Q 036340 457 MVNEYGIEPR--IEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 457 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 532 (579)
.... .-.|+ .++|..+..+....||+.-|.+.|+-. ...| ....++.+...-.+.|++++|..++..+....|+-
T Consensus 384 Alst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 384 ALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 7653 33343 456677777777777777777777655 2233 45567777766667777777777777777777765
Q ss_pred CCCchhhh
Q 036340 533 STPYVLLY 540 (579)
Q Consensus 533 ~~~~~~l~ 540 (579)
......+.
T Consensus 463 ~E~~~Nl~ 470 (478)
T KOG1129|consen 463 AEVTTNLQ 470 (478)
T ss_pred ccccccee
Confidence 54444443
No 62
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=2.6e-09 Score=102.50 Aligned_cols=396 Identities=14% Similarity=0.143 Sum_probs=228.0
Q ss_pred hhhcCCCHHHHHHHhccCCCCchhHHHHHHHHHHHcCCCCChHHHHHHHhhCC------------CCCcchHHHHHHHHH
Q 036340 4 GYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP------------ERDCVTWNTVISGYA 71 (579)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~l~~~~~ 71 (579)
.|+.-|+.+.|.+..+.+.. ...|..+...+.+.++ ++-|.-.+-.|. +.+..+-..+.....
T Consensus 737 fyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~R---LDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRR---LDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhcc---ccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 46778899999888777653 4458888888888777 666655554443 222244444555556
Q ss_pred ccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCCC-CcchHHHHHHHHHhCCCHHHHHHHHHHhcc
Q 036340 72 KTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR-DSASLSALVSGLIQNGELDEAARVLVKCGS 150 (579)
Q Consensus 72 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 150 (579)
..|.+++|+.+|.+-.. |..|=..|...|.+++|.++.+.-.+- -..+|...+.-+-..++.+.|++.|++...
T Consensus 812 eLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred HHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 78999999999988753 344556777889999999988775442 345778888888888999999999987432
Q ss_pred CCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 036340 151 RCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE 230 (579)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 230 (579)
+....+..|. .++.....+.+.+. |...|.-....+-..|+.+.|+.+|...
T Consensus 887 ------hafev~rmL~------e~p~~~e~Yv~~~~--------------d~~L~~WWgqYlES~GemdaAl~~Y~~A-- 938 (1416)
T KOG3617|consen 887 ------HAFEVFRMLK------EYPKQIEQYVRRKR--------------DESLYSWWGQYLESVGEMDAALSFYSSA-- 938 (1416)
T ss_pred ------hHHHHHHHHH------hChHHHHHHHHhcc--------------chHHHHHHHHHHhcccchHHHHHHHHHh--
Confidence 1111222221 12333344444443 3345555566666677777777777654
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHccCCC-CC-------hhhHHHHH
Q 036340 231 RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ-KN-------LVSWNSMI 302 (579)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-------~~~~~~l~ 302 (579)
.-|..+++..+-.|+.++|-++-++ ..|......|.+.|-..|++.+|..+|.+... .| ...-..|.
T Consensus 939 ---~D~fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 939 ---KDYFSMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred ---hhhhhheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3456666667777777777777666 35666666777777777777777777776542 00 00011111
Q ss_pred HHHHhC--CCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHH---------HHHHhhcC--CCCchHHHH
Q 036340 303 AGCETN--KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI---------HQMVTKTV--IPDVPINNA 369 (579)
Q Consensus 303 ~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~---------~~~~~~~~--~~~~~~~~~ 369 (579)
..+... .+.-.|-.+|++. |. -+......|.+.|.+.+|.++ ++.+.+.. ..|+...+.
T Consensus 1014 nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 111111 1222333334332 11 122223344455555555443 22222222 235666666
Q ss_pred HHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCC-CCCChh----hHHHHHHHhccc
Q 036340 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK-VLPTYI----TFISVLSACAHA 444 (579)
Q Consensus 370 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~----~~~~l~~~~~~~ 444 (579)
-.+.++...++++|..++-... .|...+..| ...+..-..++-+.|.-.. -.|+.. ....+...|.++
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar------~~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLAR------EFSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 7777777777777777765543 122223322 2333333444444443221 223322 445566678888
Q ss_pred CcHHHHHHHHHHh
Q 036340 445 GLVEEGRQHFKSM 457 (579)
Q Consensus 445 ~~~~~a~~~~~~~ 457 (579)
|.+..|-+-|.++
T Consensus 1159 G~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1159 GAYHAATKKFTQA 1171 (1416)
T ss_pred cchHHHHHHHhhh
Confidence 8888777666554
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=8.4e-10 Score=97.45 Aligned_cols=274 Identities=11% Similarity=0.019 Sum_probs=196.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHH---HHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHH
Q 036340 261 HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS---MIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSIL 337 (579)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 337 (579)
+.|......+..++...|+.++|+..|++..--|+.+... ....+...|++++...+...+....- -....|..-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhh
Confidence 5677777888888888888888888888776544443332 23344566777777777666654221 1112222222
Q ss_pred HhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CC-CCeeeHHHHHHHHHhcCChHHH
Q 036340 338 SMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LL-KNVVSWNAMIGGCASHGFATEA 415 (579)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A 415 (579)
......+++..|..+-++.-...+.+...+..-..++...+++++|.=.|++.. .. -+...|..|+.+|...|++.+|
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 333455666666666666444455566667677788888999999999998875 23 4778899999999999999999
Q ss_pred HHHHHHhHhCCCCCChhhHHHHH-HH-hcccCcHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHhhccCChHHHHHHHHh
Q 036340 416 LELFKSMRSFKVLPTYITFISVL-SA-CAHAGLVEEGRQHFKSMVNEYGIEPR-IEHFASLVDIVGRHGRLEDAMDLIKG 492 (579)
Q Consensus 416 ~~~~~~~~~~~~~p~~~~~~~l~-~~-~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 492 (579)
.......... ++.+..+...+. .. +.....-++|.+++++.+ .+.|+ ......+++.+...|...+++.++++
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 9888776642 334445666553 33 334455688999998776 55775 56677888999999999999999988
Q ss_pred C-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhh
Q 036340 493 M-PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539 (579)
Q Consensus 493 ~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 539 (579)
. ...||....+.+...+...+.+.+|...|..++.++|++-.+...|
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 7 6678999999999999999999999999999999999987655554
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=3.4e-10 Score=109.39 Aligned_cols=425 Identities=12% Similarity=0.082 Sum_probs=236.8
Q ss_pred CCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCC
Q 036340 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199 (579)
Q Consensus 120 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 199 (579)
+++.++..++..-...|+.+.|..++.+|.++ |.|-..+.|..++.+ .++...+..+++-|. ..|+.
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~--gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq--------e~gv~ 268 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEK--GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ--------EKGVQ 268 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHc--CCCcccccchhhhhc---CccchHHHHHHHHHH--------HhcCC
Confidence 57778888888888999999999999999998 778777777777655 778888888888887 77999
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHH-----------HHHhcCC-----------------------------CChhHHHHH
Q 036340 200 RNIVSWNSMIMCYAKAGDVVSARE-----------IFEQMLE-----------------------------RDTFSWNTM 239 (579)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~-----------~~~~~~~-----------------------------~~~~~~~~l 239 (579)
|+..|+...+..+..+|....+.+ ++..+.. .....|...
T Consensus 269 p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c 348 (1088)
T KOG4318|consen 269 PGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC 348 (1088)
T ss_pred CCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH
Confidence 999998877776666444221111 1111100 011122222
Q ss_pred HHHHHhcCChHHHHHHhhcCC-------CCChhhHHHHHHHHHhc----------------------CCHHHHHHHHccC
Q 036340 240 ISGYIHVLDMEEASNLFVKMP-------HPDTLTWNAMVSGYAQI----------------------GNLELALDFFKRM 290 (579)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~----------------------g~~~~A~~~~~~~ 290 (579)
. -....|.-+...++-..+. ..++..|..++.-|.+. ....+..+.....
T Consensus 349 ~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l 427 (1088)
T KOG4318|consen 349 E-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL 427 (1088)
T ss_pred H-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh
Confidence 2 1222566666666655554 12233343333333221 1111111111111
Q ss_pred CCCCh-----------------hh-----------HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccC
Q 036340 291 PQKNL-----------------VS-----------WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342 (579)
Q Consensus 291 ~~~~~-----------------~~-----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (579)
. ||. .. -+.++..+++.-+..+++..-++.... ..| ..|..++..+..
T Consensus 428 r-kns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~ 503 (1088)
T KOG4318|consen 428 R-KNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDL 503 (1088)
T ss_pred C-cchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHH
Confidence 1 111 01 123333444444444444332222211 111 456677777777
Q ss_pred CCchhhHHHHHHH---HhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc----CCCC-eeeHHHHHHHHHhcCChHH
Q 036340 343 IVDLHLGMQIHQM---VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK----LLKN-VVSWNAMIGGCASHGFATE 414 (579)
Q Consensus 343 ~~~~~~a~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~ 414 (579)
....+.|..+.+. ....+..+...+..+.+.+.+.+...++..++.++. ..|+ ..++--++......|+.+.
T Consensus 504 hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~ 583 (1088)
T KOG4318|consen 504 HDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEK 583 (1088)
T ss_pred HHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHH
Confidence 7777777777666 233344566677788888888888888888888775 2222 1223334444555666655
Q ss_pred HHHHHHHhHhCCCC------------------------------CChhhHHHHHHH---------------------hcc
Q 036340 415 ALELFKSMRSFKVL------------------------------PTYITFISVLSA---------------------CAH 443 (579)
Q Consensus 415 A~~~~~~~~~~~~~------------------------------p~~~~~~~l~~~---------------------~~~ 443 (579)
..++++-+...|+. |.+.....+.+. |.+
T Consensus 584 Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k 663 (1088)
T KOG4318|consen 584 LKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEK 663 (1088)
T ss_pred HHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHh
Confidence 55555554443322 211111111111 122
Q ss_pred cCcHHHHHHHHHHhHHhhCCC--C--C--------------------cchhHHHHHHhhccCChHHHHHHHHhCCCCCCH
Q 036340 444 AGLVEEGRQHFKSMVNEYGIE--P--R--------------------IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK 499 (579)
Q Consensus 444 ~~~~~~a~~~~~~~~~~~~~~--~--~--------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 499 (579)
.|++.+|..+.+. .|+. + | ......|...|.+.|+++.|..++.++++.|+.
T Consensus 664 ~g~~~~a~di~et----pG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~ 739 (1088)
T KOG4318|consen 664 LGSCVDAGDITET----PGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSP 739 (1088)
T ss_pred cccccchhhcccc----CcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcch
Confidence 2222222222210 0110 0 0 011123566788899999999999999888888
Q ss_pred HHHHHHHHHHhhcC---CHHHHHHHHHHHhhcCCCCCCC---chhhhhhhhhcCCchHHHHHHHHHHhCCCCC
Q 036340 500 AVWGALLGACRVHN---NVELAQVAAEALMKVEPENSTP---YVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566 (579)
Q Consensus 500 ~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 566 (579)
.+...++..+.+.. |..++...-+++.+..|..+.+ +...+....+-...+.|.+.+.+..+.....
T Consensus 740 ~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~ 812 (1088)
T KOG4318|consen 740 MKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVS 812 (1088)
T ss_pred HHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCC
Confidence 88888877775543 5667777777777777665543 3344444455555557888888887775443
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=1.1e-09 Score=104.48 Aligned_cols=416 Identities=13% Similarity=0.072 Sum_probs=250.8
Q ss_pred CCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCC
Q 036340 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199 (579)
Q Consensus 120 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 199 (579)
.++..|..+.-++...|+++.+.+.|++... ..-.....|+.+...+...|.-..|..+++..... ..-+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~---~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~-------~~~p 390 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALP---FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK-------SEQP 390 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc-------ccCC
Confidence 3556667777888889999999999999877 55556677888888899999988899998887611 1113
Q ss_pred cchHHHHHHHHHHH-hcCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhc-----------CChHHHHHHhhcC
Q 036340 200 RNIVSWNSMIMCYA-KAGDVVSAREIFEQMLE--------RDTFSWNTMISGYIHV-----------LDMEEASNLFVKM 259 (579)
Q Consensus 200 ~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~ 259 (579)
+++..+......|. +.+..++++.+-.+++. -.+..+..+.-+|... ....++++.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 34445544444444 34666666666665543 1344455544444322 1244566666666
Q ss_pred C---CCChhhHHHHHHHHHhcCCHHHHHHHHccCCC----CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhh
Q 036340 260 P---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ----KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332 (579)
Q Consensus 260 ~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 332 (579)
. +.|+.+...+.--|+..++++.|.+..++..+ .+...|..|...+...+++..|+.+.+.....-.. |...
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l 549 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVL 549 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhh
Confidence 4 34444444455557778888888888877654 46678888888888888898888888776543110 1111
Q ss_pred HHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhccC---CC-C-eeeHHHHHHHHH
Q 036340 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKL---LK-N-VVSWNAMIGGCA 407 (579)
Q Consensus 333 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~-~-~~~~~~l~~~~~ 407 (579)
...-+..-...++.+.+.........-...-. .....++-....+....+.. .| + +.++..+..-..
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~--------~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEY--------GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhh--------hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 11111122223444444333221000000000 00011112222333333321 11 1 112222221111
Q ss_pred hcC---ChHHHHHHHHHhHhCCCCCChh--------hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHH
Q 036340 408 SHG---FATEALELFKSMRSFKVLPTYI--------TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVD 475 (579)
Q Consensus 408 ~~~---~~~~A~~~~~~~~~~~~~p~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 475 (579)
..+ ..+.. +.+....|... .|......+...+..++|...+.+.. ++.| ....|...+.
T Consensus 622 ~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 622 SQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGL 692 (799)
T ss_pred hhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhH
Confidence 111 11111 22222223222 23344456777888888888877775 3344 5667777778
Q ss_pred HhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHH--HHHHHhhcCCCCCCCchhhhhhhhhcCCchH
Q 036340 476 IVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQV--AAEALMKVEPENSTPYVLLYNMYADVGRWDD 551 (579)
Q Consensus 476 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 551 (579)
.+...|..++|.+.|... ...| ++.....+...+.+.|+..-|.. ++..+++++|.++.+|+.|+.++...|+.++
T Consensus 693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 888899999999888776 5566 45678888888989998877777 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 036340 552 ANEVRLLMKSNN 563 (579)
Q Consensus 552 A~~~~~~~~~~~ 563 (579)
|.+.|....+..
T Consensus 773 Aaecf~aa~qLe 784 (799)
T KOG4162|consen 773 AAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHhhc
Confidence 999998776544
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=3.4e-10 Score=99.77 Aligned_cols=275 Identities=13% Similarity=0.137 Sum_probs=134.0
Q ss_pred CCHHHHHHHHccCCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHH
Q 036340 278 GNLELALDFFKRMPQ---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQ 354 (579)
Q Consensus 278 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 354 (579)
|++.+|++...+..+ .....|..-+.+....||.+.+-.++.+..+....++..............|+.+.|..-..
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 445555554444332 11122222333344445555555555554443223333333333344444555555554444
Q ss_pred HHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhccCCC-----------CeeeHHHHHHHHHhcCChHHHHHHHHHhH
Q 036340 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLK-----------NVVSWNAMIGGCASHGFATEALELFKSMR 423 (579)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 423 (579)
......+.++.+......+|.+.|++.....++.++. +. ...+|+.+++-....+..+.-...|+...
T Consensus 178 ~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~-ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLR-KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHH-HccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 4444444445555555566666666666666655553 11 11234444444443344444444444443
Q ss_pred hCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC--CCCCCHHH
Q 036340 424 SFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM--PFEPDKAV 501 (579)
Q Consensus 424 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~ 501 (579)
. ..+-++..-..++.-+...|+.++|.++.++..++ +.+|. ...++ ...+-++...=++..++. ..+.++..
T Consensus 257 r-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 257 R-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred H-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 3 12333344444555556666666666666666554 44443 11111 122344444433333333 11223456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 502 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
+.+++..|.+++.+.+|...++.+++..|+.. .+..++.++.+.|+..+|....++..
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 66666666666666666666666666666643 36666666666666666666666544
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.41 E-value=3.1e-10 Score=108.19 Aligned_cols=426 Identities=13% Similarity=0.089 Sum_probs=278.9
Q ss_pred CCchhhHHHHHHHHHhcCChhhHHHHHccCCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHH
Q 036340 88 ARNVVSWNAMISGFLQNGDVANAIEFFDRMPG---RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT 164 (579)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 164 (579)
..++..|..|.-++.+.|+++.+.+.|++... .....|+.+...+...|.-..|..+++...... ..|++...+..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~-~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS-EQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc-cCCCcchHHHH
Confidence 35777889999999999999999999998765 356778889999999999999999999987753 12445555555
Q ss_pred HHHHHh-hCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhc-----------CCHHHHHHHHHhcCCC-
Q 036340 165 LIVGYG-QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKA-----------GDVVSAREIFEQMLER- 231 (579)
Q Consensus 165 l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~- 231 (579)
....|. +.+.+++++.+-.++...... ..+ ...+..|..+.-+|... ....++.+.+++.++.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~---~~~-~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGG---QRS-HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhh---hhh-hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 555554 467788888877777643211 111 22334455555555432 1234667777777543
Q ss_pred --ChhHHHHHHHHHHhcCChHHHHHHhhcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHccCCCC---ChhhHHHHH
Q 036340 232 --DTFSWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK---NLVSWNSMI 302 (579)
Q Consensus 232 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~ 302 (579)
|+.....+.--|.-.++.+.|.+..++.. ..+...|..|...+...+++.+|+.+.+..... |......-+
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 56666666677788899999999888776 456788999999999999999999999887652 222222223
Q ss_pred HHHHhCCCchHHHHHHHHHHHcC--CCCChhhHHHHHHhccCCCchhhHHHHHHH---HhhcCCCCchHHHHHHHHhhhc
Q 036340 303 AGCETNKDYEGAIKLFIQMQVEG--EKPDRHTFSSILSMSSGIVDLHLGMQIHQM---VTKTVIPDVPINNALITMYARC 377 (579)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~l~~~~~~~ 377 (579)
..-..-++.++++.....+..-- ..+-..+ ++-....+.... ........+.++..+.......
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 33334677788877776664310 0000000 000000111000 0001111112222222111111
Q ss_pred CCHHHHHHHHHhccCCCCe--------eeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh-hhHHHHHHHhcccCcHH
Q 036340 378 GAIVEARIIFEEMKLLKNV--------VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY-ITFISVLSACAHAGLVE 448 (579)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~ 448 (579)
+....-...+......|.. ..|......+.+.++.++|...+.+... +.|-. ..|......+...|.++
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhH
Confidence 1100000001111112222 1355666778888999999988888874 45544 47777777888999999
Q ss_pred HHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHH
Q 036340 449 EGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMD--LIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAE 523 (579)
Q Consensus 449 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 523 (579)
+|.+.|...+ .+.| ++.....++.++.+.|+..-|.. ++..+ ..+| ++..|..++..+.+.|+.+.|.+.|.
T Consensus 702 EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 702 EAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 9999998876 5677 57888999999999998887777 77777 5666 78899999999999999999999999
Q ss_pred HHhhcCCCCCC
Q 036340 524 ALMKVEPENST 534 (579)
Q Consensus 524 ~~~~~~p~~~~ 534 (579)
.+.++.+.+|.
T Consensus 779 aa~qLe~S~PV 789 (799)
T KOG4162|consen 779 AALQLEESNPV 789 (799)
T ss_pred HHHhhccCCCc
Confidence 99999888764
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.40 E-value=3.5e-09 Score=99.14 Aligned_cols=123 Identities=14% Similarity=0.052 Sum_probs=69.9
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHhhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR-IEHFASLVDIVGRHGRLEDAMDLIKGMP--FEPDKAVWGALLGAC 509 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 509 (579)
++..++..+-..|+++.|..+++.++ +..|+ ++.|..-++++...|++++|..++++.. ..||...-..-+.-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 44455566667777777777777666 33554 4555555666777777777777777662 233433333445555
Q ss_pred hhcCCHHHHHHHHHHHhhcCCC------CCC-Cchh--hhhhhhhcCCchHHHHHHHH
Q 036340 510 RVHNNVELAQVAAEALMKVEPE------NST-PYVL--LYNMYADVGRWDDANEVRLL 558 (579)
Q Consensus 510 ~~~~~~~~A~~~~~~~~~~~p~------~~~-~~~~--l~~~~~~~g~~~~A~~~~~~ 558 (579)
.+.++.++|.++..+-.+-.-+ +.. .|+. =+.+|.++|++-.|++-+..
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 5667777777666555432211 011 1222 25577777777766654433
No 69
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.38 E-value=3.2e-08 Score=94.15 Aligned_cols=74 Identities=11% Similarity=0.053 Sum_probs=35.9
Q ss_pred HhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHH
Q 036340 476 IVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555 (579)
Q Consensus 476 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 555 (579)
++.+.+++..|.++-+.-.-..-+..+..-.+.....|++-+|..++-++ ..|+ ....-|...+.|.+|+++
T Consensus 1056 mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllra--nkp~------i~l~yf~e~~lw~dalri 1127 (1636)
T KOG3616|consen 1056 MFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRA--NKPD------IALNYFIEAELWPDALRI 1127 (1636)
T ss_pred HhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeec--CCCc------hHHHHHHHhccChHHHHH
Confidence 44455555555555443211111233444445556667777776665332 2233 122345566667666655
Q ss_pred HH
Q 036340 556 RL 557 (579)
Q Consensus 556 ~~ 557 (579)
-+
T Consensus 1128 ~k 1129 (1636)
T KOG3616|consen 1128 AK 1129 (1636)
T ss_pred HH
Confidence 43
No 70
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.37 E-value=6.7e-10 Score=108.68 Aligned_cols=542 Identities=15% Similarity=0.078 Sum_probs=322.5
Q ss_pred CCHHHHHHHhccCCCCch---hHHHHHHHHHHHcCCCCChHHHHHHHhhCCC---CCcchHHHHHHHHHccCCHHHHHHH
Q 036340 9 REMAKARKLFDEMPQRDV---VSWNVMISGYISSRGSGFLEEARYLFDIMPE---RDCVTWNTVISGYAKTGEMEEALRL 82 (579)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~ 82 (579)
.+...|+..|=+..+.|+ ..|..|...|...-+ ...|.+.|++..+ .|......+...|.+..+++.|..+
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D---m~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD---MKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 345667777766666443 357777777776655 7888888888874 4445677888899999999999888
Q ss_pred hhcCCCCc-----hhhHHHHHHHHHhcCChhhHHHHHccCCCC---CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCC
Q 036340 83 FNSMPARN-----VVSWNAMISGFLQNGDVANAIEFFDRMPGR---DSASLSALVSGLIQNGELDEAARVLVKCGSRCDG 154 (579)
Q Consensus 83 ~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 154 (579)
.-...+.. ...|..+.-.|.+.++..+|+.-|+...+. |...|..+..+|.+.|.+..|.++|.++.. -
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---L 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL---L 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---c
Confidence 44433222 234455666788889999999999988764 445677899999999999999999988776 3
Q ss_pred CCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----
Q 036340 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE---- 230 (579)
Q Consensus 155 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 230 (579)
.|.+...-.......+..|++.+|...+..+....... ..+...-..++..+...+.-.|-..+|...++..++
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e--~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE--RTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 45555455555666778899999998888775221000 001111222333333333333444444444443321
Q ss_pred -------CChhHHHHHHHHHHhcCCh--HH----HHHH----hhcCC---------------------CCChhhHHHHHH
Q 036340 231 -------RDTFSWNTMISGYIHVLDM--EE----ASNL----FVKMP---------------------HPDTLTWNAMVS 272 (579)
Q Consensus 231 -------~~~~~~~~l~~~~~~~~~~--~~----a~~~----~~~~~---------------------~~~~~~~~~l~~ 272 (579)
.+...|-.+..++.-.-.. +. ...+ ++.+. ..++.+|..|+.
T Consensus 704 ~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGI 783 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhH
Confidence 1222232222221110000 00 0000 11111 112333444444
Q ss_pred HHHh----cC----CHHHHHHHHccCCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhcc
Q 036340 273 GYAQ----IG----NLELALDFFKRMPQ---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341 (579)
Q Consensus 273 ~~~~----~g----~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (579)
.|.+ .| +...|+..+.+..+ .+...|+.|... ...|++.-|...|-+-.... +....+|..+...+.
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEE
Confidence 3332 11 23356666665553 556677776655 45567777777776655432 235566777777788
Q ss_pred CCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-------CCCCeeeHHHHHHHHHhcCChHH
Q 036340 342 GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-------LLKNVVSWNAMIGGCASHGFATE 414 (579)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~ 414 (579)
...+++.|...+.+...-.|.+...+..........|+.-++..+|..-. ..++..-|.....-...+|+.++
T Consensus 862 ~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 88888888888888888888888777776666677787777777776521 12233333333334455666555
Q ss_pred HHHHHHHhHhC---------CCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhH----HHHHHhhccC
Q 036340 415 ALELFKSMRSF---------KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA----SLVDIVGRHG 481 (579)
Q Consensus 415 A~~~~~~~~~~---------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g 481 (579)
-+...+.+... +.+.....|........+.+.+..|.+...+.+.-....-+...|+ .+.+.+...|
T Consensus 942 ~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslg 1021 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLG 1021 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 44433332221 2233445777777777778888877777665542111122333333 4566677888
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC---CchhhhhhhhhcCCchHHHHHHHH
Q 036340 482 RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST---PYVLLYNMYADVGRWDDANEVRLL 558 (579)
Q Consensus 482 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~ 558 (579)
.++.|..-+.......+......-+.. ...|+++++.+.|++++.+..++.. ....++.....++..+.|...+-+
T Consensus 1022 efe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe 1100 (1238)
T KOG1127|consen 1022 EFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFE 1100 (1238)
T ss_pred chhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHH
Confidence 888887777665433344333333322 5678999999999999987655544 344556666777888888887666
Q ss_pred HHh
Q 036340 559 MKS 561 (579)
Q Consensus 559 ~~~ 561 (579)
...
T Consensus 1101 ~~~ 1103 (1238)
T KOG1127|consen 1101 VKS 1103 (1238)
T ss_pred HHH
Confidence 543
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.5e-09 Score=99.02 Aligned_cols=417 Identities=12% Similarity=0.034 Sum_probs=253.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHH
Q 036340 127 ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206 (579)
Q Consensus 127 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (579)
.=+..+...|++++|.+...+++. ..|.+..++..-+-+..+.+++++|..+.+.-. +...+..-+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~---~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~----------~~~~~~~~~f 83 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILS---IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG----------ALLVINSFFF 83 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHh---cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc----------hhhhcchhhH
Confidence 345566778999999999999998 567788888888889999999999997776543 1122222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHH-HHhcCCHHHHHH
Q 036340 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG-YAQIGNLELALD 285 (579)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~ 285 (579)
.-+-+..+.+..++|+..++.....+..+...-...+.+.|++++|..+|+.+.+.+...+...+.+ +...+-...+.
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~- 162 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ- 162 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-
Confidence 3445666899999999999966555666777788999999999999999999974444443332221 11111112222
Q ss_pred HHccCCCCChhhHH---HHHHHHHhCCCchHHHHHHHHHHHcC-------CCCC------h-hhHHHHHHhccCCCchhh
Q 036340 286 FFKRMPQKNLVSWN---SMIAGCETNKDYEGAIKLFIQMQVEG-------EKPD------R-HTFSSILSMSSGIVDLHL 348 (579)
Q Consensus 286 ~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~------~-~~~~~l~~~~~~~~~~~~ 348 (579)
+.+........+|. .....+...|++.+|+++++...+.+ ..-+ . ..-..+...+...|+..+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 34444332233343 34556778999999999999883221 1111 1 112233445678899999
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHh---hhcCCH-H-HHHHHHHhcc-------------CCCCeeeHH-HHHHHHHhc
Q 036340 349 GMQIHQMVTKTVIPDVPINNALITMY---ARCGAI-V-EARIIFEEMK-------------LLKNVVSWN-AMIGGCASH 409 (579)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~-~-~A~~~~~~~~-------------~~~~~~~~~-~l~~~~~~~ 409 (579)
|..++....+..++|........+-+ ....++ + .++..++... .+......| .++..| .
T Consensus 243 a~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--t 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--T 320 (652)
T ss_pred HHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 99999886666666654333222211 111111 1 1222222221 001111122 222222 2
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHHh--cccCcHHHHHHHHHHhHHhhCCCCC--cchhHHHHHHhhccCChHH
Q 036340 410 GFATEALELFKSMRSFKVLPTYITFISVLSAC--AHAGLVEEGRQHFKSMVNEYGIEPR--IEHFASLVDIVGRHGRLED 485 (579)
Q Consensus 410 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 485 (579)
+..+.+.++-.... +..|.. .+..++..+ .+...+..+.+++....+. .|. ..+....+......|+++.
T Consensus 321 nk~~q~r~~~a~lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~---~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 321 NKMDQVRELSASLP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFADG---HPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred hhHHHHHHHHHhCC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhcc---CCchhHHHHHHHHHHHHhcCCHHH
Confidence 33344444444333 233433 333444422 2233577788887776543 332 3455667778889999999
Q ss_pred HHHHHH--------hC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcC-------CCCCCCchhhhhhhhhcCCc
Q 036340 486 AMDLIK--------GM-PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE-------PENSTPYVLLYNMYADVGRW 549 (579)
Q Consensus 486 A~~~~~--------~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~ 549 (579)
|.+++. .. .....+.+...+...+.+.++.+.|..++..+++.. +.-...+..++..-.+.|+-
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 999998 33 233455666677777888888888888888887522 22223455666677788999
Q ss_pred hHHHHHHHHHHhCCCC
Q 036340 550 DDANEVRLLMKSNNIK 565 (579)
Q Consensus 550 ~~A~~~~~~~~~~~~~ 565 (579)
++|..+++++.+.+.+
T Consensus 475 ~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPN 490 (652)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999999875543
No 72
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.35 E-value=9.6e-09 Score=97.56 Aligned_cols=308 Identities=17% Similarity=0.189 Sum_probs=147.2
Q ss_pred HHHHHHHhcCCHHHHHHHHH--hcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 036340 207 SMIMCYAKAGDVVSAREIFE--QMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELAL 284 (579)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 284 (579)
+.+..|.+.|.+.+|.+... ..+..|......+..++.+..-+++|-.+|+++..++. .+.+|.+-.-+.+|.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kai 694 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAI 694 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHH
Confidence 34566666666666654432 12223444444555555555555555555554433221 122222222233333
Q ss_pred HHHccCCCCChhh-HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCC
Q 036340 285 DFFKRMPQKNLVS-WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD 363 (579)
Q Consensus 285 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 363 (579)
++-+-.-...++. -......+...|+++.|+..|-+.. .....+.+......+.+|..+++..... ...
T Consensus 695 elarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdq-k~~ 764 (1636)
T KOG3616|consen 695 ELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQ-KTA 764 (1636)
T ss_pred HHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhh-ccc
Confidence 3332222111111 1122233444555555555554331 1223344455555666666665542111 111
Q ss_pred chHHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcc
Q 036340 364 VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443 (579)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 443 (579)
..-|..+...|...|+++.|+++|.+.. .++..|..|.+.|+++.|.++-.+.. |.......|..-..-+-.
T Consensus 765 s~yy~~iadhyan~~dfe~ae~lf~e~~------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 765 SGYYGEIADHYANKGDFEIAEELFTEAD------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDE 836 (1636)
T ss_pred cccchHHHHHhccchhHHHHHHHHHhcc------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHh
Confidence 2234556666777777777777776543 34455666777777777766665554 333334455544445556
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 036340 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAE 523 (579)
Q Consensus 444 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 523 (579)
.|++.+|.++|-.+- .|+ .-+.+|-+.|..++.+++..+-.-..-..+...+..-+-..|+...|...|-
T Consensus 837 hgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 837 HGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 666666666554331 222 2334555666666666666554222223344445555555566655555554
Q ss_pred HHhhcCCCCCCCchhhhhhhhhcCCchHHHHH
Q 036340 524 ALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555 (579)
Q Consensus 524 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 555 (579)
++-+ |..-++.|...+.|++|.++
T Consensus 907 ea~d--------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 907 EAGD--------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred hhhh--------HHHHHHHhhhhhhHHHHHHH
Confidence 3321 33334444445555554443
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=4e-11 Score=97.47 Aligned_cols=161 Identities=12% Similarity=0.125 Sum_probs=128.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHH
Q 036340 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDI 476 (579)
Q Consensus 399 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 476 (579)
..-|.-.|.+.|+...|..-+++.+++ .|+.. ++..+...|.+.|..+.|.+.|++.++ +.| +-.+.+..+..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 445667788888888888888888864 56655 788888888888888888888888873 455 56777888888
Q ss_pred hhccCChHHHHHHHHhCCCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHH
Q 036340 477 VGRHGRLEDAMDLIKGMPFEP----DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA 552 (579)
Q Consensus 477 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 552 (579)
++.+|++++|...|++.-..| -..+|.+++.+..+.|+.+.|...|++.++.+|+.+.....++..+...|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 888888888888888873222 3457888887778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCC
Q 036340 553 NEVRLLMKSNNI 564 (579)
Q Consensus 553 ~~~~~~~~~~~~ 564 (579)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 888888776665
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.6e-08 Score=89.53 Aligned_cols=267 Identities=10% Similarity=-0.029 Sum_probs=196.4
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhH-HHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHH
Q 036340 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF-SSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALI 371 (579)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 371 (579)
.|+.....+..++...|+.++|+..|++..-. .|+..+- -.....+...|+.+....+....-.........|..-+
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 57788889999999999999999999987653 3332221 11122345667777666665553333333333344444
Q ss_pred HHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHHhcccCcHH
Q 036340 372 TMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVLSACAHAGLVE 448 (579)
Q Consensus 372 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~ 448 (579)
......++++.|+.+-++.. .+.+...+..-...+...|++++|.-.|+.... +.|. -.+|..|+.+|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHH
Confidence 55566788999998887764 234555676677888999999999999999884 5664 459999999999999999
Q ss_pred HHHHHHHHhHHhhCCCCCcchhHHHH-HHhh-ccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHH
Q 036340 449 EGRQHFKSMVNEYGIEPRIEHFASLV-DIVG-RHGRLEDAMDLIKGM-PFEPD-KAVWGALLGACRVHNNVELAQVAAEA 524 (579)
Q Consensus 449 ~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 524 (579)
+|.-.-+...+. ++.+..+...++ ..+. ...--++|.+++++. ...|+ ....+.+...+...|.+++++.++++
T Consensus 386 EA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 999887777653 344555555442 2222 333457899999886 66775 45777888889999999999999999
Q ss_pred HhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCC
Q 036340 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566 (579)
Q Consensus 525 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 566 (579)
.+...|+.. .+..|+.++...+.+++|.+.|......++..
T Consensus 464 ~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 464 HLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 999999964 49999999999999999999999887666543
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=3.8e-10 Score=112.51 Aligned_cols=242 Identities=13% Similarity=0.015 Sum_probs=168.8
Q ss_pred CchHHHHHHHHHHHcCCCCCh-hhHHHHHHhcc---------CCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCC
Q 036340 310 DYEGAIKLFIQMQVEGEKPDR-HTFSSILSMSS---------GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGA 379 (579)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 379 (579)
++++|..+|++..+. .|+. ..+..+..++. ..++.+.|...++......|.+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 356777777777654 3332 23333222211 23446777777777666667778888888889999999
Q ss_pred HHHHHHHHHhcc-CCC-CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHH
Q 036340 380 IVEARIIFEEMK-LLK-NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKS 456 (579)
Q Consensus 380 ~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 456 (579)
+++|...|++.. ..| +...+..+..++...|++++|+..+++..+. .|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999864 344 4567888899999999999999999999864 56543 333444456678999999999998
Q ss_pred hHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhhc---CC
Q 036340 457 MVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPDK-AVWGALLGACRVHNNVELAQVAAEALMKV---EP 530 (579)
Q Consensus 457 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p 530 (579)
+... .+| ++..+..++.++...|+.++|...+.++ +..|+. ...+.+...+...|+ +|...++++.+. .|
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhh
Confidence 8753 234 4455777888999999999999999887 344543 344555566666664 777777777653 34
Q ss_pred CCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 531 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
.++. .+..+|.-.|+-+.+... +++.+.+
T Consensus 508 ~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4433 366777788887776666 7776554
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=1.6e-10 Score=115.16 Aligned_cols=236 Identities=11% Similarity=0.011 Sum_probs=155.3
Q ss_pred CCHHHHHHHhhcCCC--C-chhhHHHHHHHHHh---------cCChhhHHHHHccCCCC---CcchHHHHHHHHHhCCCH
Q 036340 74 GEMEEALRLFNSMPA--R-NVVSWNAMISGFLQ---------NGDVANAIEFFDRMPGR---DSASLSALVSGLIQNGEL 138 (579)
Q Consensus 74 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 138 (579)
+++++|+..|++... | +...|..+..++.. .+++++|...+++..+. +...+..+...+...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 456788888887762 3 34455555554432 24477888888876652 445666777777888888
Q ss_pred HHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcc-hHHHHHHHHHHHhcCC
Q 036340 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN-IVSWNSMIMCYAKAGD 217 (579)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 217 (579)
++|+..++++++ ..|.+..++..++.++...|++++|...++++. .+.|+ ...+..++..+...|+
T Consensus 355 ~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al----------~l~P~~~~~~~~~~~~~~~~g~ 421 (553)
T PRK12370 355 IVGSLLFKQANL---LSPISADIKYYYGWNLFMAGQLEEALQTINECL----------KLDPTRAAAGITKLWITYYHTG 421 (553)
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------hcCCCChhhHHHHHHHHHhccC
Confidence 888888888887 456667778888888888888888888888886 22343 2233344555666788
Q ss_pred HHHHHHHHHhcCC---C-ChhHHHHHHHHHHhcCChHHHHHHhhcCC--CCC-hhhHHHHHHHHHhcCCHHHHHHHHccC
Q 036340 218 VVSAREIFEQMLE---R-DTFSWNTMISGYIHVLDMEEASNLFVKMP--HPD-TLTWNAMVSGYAQIGNLELALDFFKRM 290 (579)
Q Consensus 218 ~~~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 290 (579)
+++|...++++++ + ++..+..+..++...|+.++|...++++. .|+ ....+.+...|...| ++|...++.+
T Consensus 422 ~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~l 499 (553)
T PRK12370 422 IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREF 499 (553)
T ss_pred HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence 8888888887753 2 34456677778888888888888888876 233 233455555666666 4676666665
Q ss_pred CC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 036340 291 PQ---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325 (579)
Q Consensus 291 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (579)
.+ ........+-..+.-.|+.+.+..+ +++.+.+
T Consensus 500 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 500 LESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 53 1111112244455566777777666 7776654
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=5.5e-10 Score=99.41 Aligned_cols=199 Identities=17% Similarity=0.094 Sum_probs=131.9
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHh
Q 036340 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMY 374 (579)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (579)
...+..+...+...|++++|...+++..+.. | .+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p---------------------------------~~~~~~~~la~~~ 75 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--P---------------------------------DDYLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--c---------------------------------ccHHHHHHHHHHH
Confidence 3456667777777777777777777766532 2 2233445566666
Q ss_pred hhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHHhcccCcHHHHH
Q 036340 375 ARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVLSACAHAGLVEEGR 451 (579)
Q Consensus 375 ~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~ 451 (579)
...|++++|.+.+++.. .+.+...+..+...+...|++++|...+++.......|. ...+..+...+...|++++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 67777777777776653 223344566677777777888888888887775432232 335666667778888888888
Q ss_pred HHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcC
Q 036340 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PF-EPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529 (579)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 529 (579)
..+++.... .+.+...+..++.++...|++++|...+++. .. +++...+..++..+...|+.++|....+.+....
T Consensus 156 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 156 KYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 888877643 1224556777788888888888888887776 22 2355566666677777888888888877776554
Q ss_pred C
Q 036340 530 P 530 (579)
Q Consensus 530 p 530 (579)
|
T Consensus 234 ~ 234 (234)
T TIGR02521 234 P 234 (234)
T ss_pred c
Confidence 3
No 78
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=1.2e-08 Score=99.03 Aligned_cols=463 Identities=13% Similarity=0.090 Sum_probs=271.2
Q ss_pred CCCcchHHHHHHHHHccCCHHHHHHHhhcCC----CCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHH
Q 036340 57 ERDCVTWNTVISGYAKTGEMEEALRLFNSMP----ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGL 132 (579)
Q Consensus 57 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 132 (579)
.||..||..+|.-|+..|+.+.|- +|.-|. +.+...++.++..+.+.++.+.+. .|.+.+|..+..+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAY 93 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHH
Confidence 788899999999999999999998 887776 345667889999999999887776 68889999999999
Q ss_pred HhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHH
Q 036340 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212 (579)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 212 (579)
...|++.. |+.+.+ ....+...+...|.-..-..++..+.. ..++-||..+ ++...
T Consensus 94 r~hGDli~----fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c-------~p~~lpda~n---~illl 149 (1088)
T KOG4318|consen 94 RIHGDLIL----FEVVEQ----------DLESINQSFSDHGVGSPERWFLMKIHC-------CPHSLPDAEN---AILLL 149 (1088)
T ss_pred HhccchHH----HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhhccc-------CcccchhHHH---HHHHH
Confidence 99999766 333222 133344555666666666666666541 2344555443 44455
Q ss_pred HhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHh-cCChHHHHHHhhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 036340 213 AKAGDVVSAREIFEQMLER---DTFSWNTMISGYIH-VLDMEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFF 287 (579)
Q Consensus 213 ~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 287 (579)
...|-++.+++++..+... .+... +++-+.. ...+++-...-+... .+++.++..++.+-...|+.+.|..++
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 5667777777777666432 22111 2333322 233444444444444 489999999999999999999999999
Q ss_pred ccCCCCC----hhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHH------------
Q 036340 288 KRMPQKN----LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQ------------ 351 (579)
Q Consensus 288 ~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------------ 351 (579)
.+|.+.. .+-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+...|....+..
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAav 304 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAV 304 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHH
Confidence 9998733 3333344433 78888899999999999999999999887766655333211111
Q ss_pred ------------HHHH-------------HhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-----C-CCCeeeHH
Q 036340 352 ------------IHQM-------------VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-----L-LKNVVSWN 400 (579)
Q Consensus 352 ------------~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~-~~~~~~~~ 400 (579)
.++. ...++.....+|..... ....|+-+..+++-..+. . ..++..|.
T Consensus 305 rsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~ 383 (1088)
T KOG4318|consen 305 RSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFG 383 (1088)
T ss_pred HHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHH
Confidence 1110 01111112222322222 222455555665555553 1 11233344
Q ss_pred HHHHHHHhcC----------------------ChHHHHHHHHHhHhCCCCCChh--------------------------
Q 036340 401 AMIGGCASHG----------------------FATEALELFKSMRSFKVLPTYI-------------------------- 432 (579)
Q Consensus 401 ~l~~~~~~~~----------------------~~~~A~~~~~~~~~~~~~p~~~-------------------------- 432 (579)
.++.-|.+.- +..+..+.+... .||..
T Consensus 384 ~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 384 ALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 4444333211 111111111111 12111
Q ss_pred --hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCC-----CCCCHHHHHHH
Q 036340 433 --TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP-----FEPDKAVWGAL 505 (579)
Q Consensus 433 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l 505 (579)
.-+.++..|+..-+..++...-+.. +..- -...|..|++........+.|..+..+.. ...|...+..+
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~eky-e~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l 534 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKY-EDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSL 534 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHH
Confidence 1122222333333333333322222 1101 12556677777777777777777777662 22344555666
Q ss_pred HHHHhhcCCHHHHHHHHHHHhh---cCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCC
Q 036340 506 LGACRVHNNVELAQVAAEALMK---VEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566 (579)
Q Consensus 506 ~~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 566 (579)
.+.+.+.+...++..+++.+.+ ..|.....+..+.......|+.+.-.++.+-+...|+.-
T Consensus 535 ~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 535 QDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 6667777777777777776665 223333445555666667777777777777666666655
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=1.9e-10 Score=104.70 Aligned_cols=116 Identities=9% Similarity=-0.114 Sum_probs=55.4
Q ss_pred CCCchHHHHHHHHHHHcC-CCCC--hhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHH
Q 036340 308 NKDYEGAIKLFIQMQVEG-EKPD--RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEAR 384 (579)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 384 (579)
.+..+.++.-+.+++... ..|+ ...+......+...|+.+.|...++......|.++..++.+...+...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 344555555555555432 1111 1223333344445555555555555544444444555555555555555555555
Q ss_pred HHHHhcc-CCC-CeeeHHHHHHHHHhcCChHHHHHHHHHhH
Q 036340 385 IIFEEMK-LLK-NVVSWNAMIGGCASHGFATEALELFKSMR 423 (579)
Q Consensus 385 ~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 423 (579)
..|+... ..| +..+|..++.++...|++++|++.+++..
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555442 222 23344445555555555555555555554
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.8e-08 Score=92.54 Aligned_cols=247 Identities=12% Similarity=0.028 Sum_probs=155.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH-HhhcCCC------CchHHHHH
Q 036340 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIP------DVPINNAL 370 (579)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~------~~~~~~~l 370 (579)
...+.....+..+++.|++.+....+.. .+..-++....++...|........... .+.|... -...+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4456666667777888888887777654 3444444555566666666555544333 2222111 11122234
Q ss_pred HHHhhhcCCHHHHHHHHHhcc-CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHH
Q 036340 371 ITMYARCGAIVEARIIFEEMK-LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVE 448 (579)
Q Consensus 371 ~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~ 448 (579)
..+|.+.++++.|+..|.+.. ...+ -....+....++++....... -+.|... -...-...+++.|++.
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-------~~~ls~lk~~Ek~~k~~e~~a--~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-------PDLLSKLKEAEKALKEAERKA--YINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-------HHHHHHHHHHHHHHHHHHHHH--hhChhHHHHHHHHHHHHHhccCHH
Confidence 456777788888888887753 1111 122333444556666555544 2344432 2223356778899999
Q ss_pred HHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 036340 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALM 526 (579)
Q Consensus 449 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 526 (579)
.|+..|.++++. .+.|...|...+-+|.+.|.+..|++-.+.. ...| ....|..-+.++....+++.|.+.|.+++
T Consensus 376 ~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 376 EAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998864 2347788889999999999999998887766 4444 44466666666777788999999999999
Q ss_pred hcCCCCCCCchhhhhhhhhcCCchHHHHHHH
Q 036340 527 KVEPENSTPYVLLYNMYADVGRWDDANEVRL 557 (579)
Q Consensus 527 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 557 (579)
+.+|++..+...+..++..+.......++.+
T Consensus 454 e~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred hcCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 9999988777776666655433333344433
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=4.8e-10 Score=106.23 Aligned_cols=193 Identities=18% Similarity=0.171 Sum_probs=144.8
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhcc---------CCCC-eeeHHHHHHHHHhcCChHHHHHHHHHhHh-----CCCCC-Ch
Q 036340 368 NALITMYARCGAIVEARIIFEEMK---------LLKN-VVSWNAMIGGCASHGFATEALELFKSMRS-----FKVLP-TY 431 (579)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p-~~ 431 (579)
+.+...|...+++++|..+|+++. ..|. ..+++.|...|.+.|++++|...+++..+ .|..+ ..
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 357778888899998888888763 1222 34577788889999998888777766542 12222 22
Q ss_pred h-hHHHHHHHhcccCcHHHHHHHHHHhHHhhC--CCCC----cchhHHHHHHhhccCChHHHHHHHHhC---------CC
Q 036340 432 I-TFISVLSACAHAGLVEEGRQHFKSMVNEYG--IEPR----IEHFASLVDIVGRHGRLEDAMDLIKGM---------PF 495 (579)
Q Consensus 432 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~ 495 (579)
. .++.+...|...+++++|..+++...+.+. ..++ ..++..|+..|...|++++|.++++++ +.
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 2 566677788999999999999987766443 2222 367889999999999999999999887 12
Q ss_pred CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhc----CCCCC---CCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 496 EP-DKAVWGALLGACRVHNNVELAQVAAEALMKV----EPENS---TPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 496 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
.+ ....++.+...|.+.+.+++|.++|++...+ .|+.+ .+|..|+.+|..+|++++|.++.+...
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33 2457788888899999999999999988753 35544 458899999999999999999988764
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.24 E-value=1.5e-08 Score=97.46 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHH
Q 036340 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558 (579)
Q Consensus 513 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 558 (579)
.=.++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 471 dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 471 DPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred cHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 3468899999999999999999999999999999999999887764
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.23 E-value=1.1e-08 Score=88.23 Aligned_cols=315 Identities=14% Similarity=0.100 Sum_probs=198.5
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHH---HHHHhcCChHHHHHHhhcCC--CCChhh-HHHHHHH
Q 036340 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI---SGYIHVLDMEEASNLFVKMP--HPDTLT-WNAMVSG 273 (579)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~--~~~~~~-~~~l~~~ 273 (579)
.++.-...+...+...|++..|+..|...++-|+..|.++. ..|...|+..-|+.-+.+.+ +||-.. -..-...
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 35555667888899999999999999999999888887765 46788888888888777776 566432 2334466
Q ss_pred HHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHH
Q 036340 274 YAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIH 353 (579)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 353 (579)
+.+.|.++.|..=|+.+.+.++.- |...+|.+-+.... ........+..+...|+...++...
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~-----------~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSN-----------GLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCc-----------chhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHHHH
Confidence 788999999999888887633210 00000000000000 0011122223334445555555544
Q ss_pred HHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh
Q 036340 354 QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431 (579)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 431 (579)
..+..-.+.+...+..-..+|...|++..|+.-++... ...+.....-+-..+...|+.+.++...++..+ +.|+.
T Consensus 179 ~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 179 THLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred HHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 44444455555566666666666666666665555443 123333444444555566666666666666653 45553
Q ss_pred h-hHH---HH---------HHHhcccCcHHHHHHHHHHhHHhhCCCCC-----cchhHHHHHHhhccCChHHHHHHHHhC
Q 036340 432 I-TFI---SV---------LSACAHAGLVEEGRQHFKSMVNEYGIEPR-----IEHFASLVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 432 ~-~~~---~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 493 (579)
. +|. .| +......++|.++.+..+..++. .|. ...+..+..++...|++.+|++...+.
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 3 111 11 11234567777777777777643 343 345566777888899999999988887
Q ss_pred -CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCc
Q 036340 494 -PFEPD-KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536 (579)
Q Consensus 494 -~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 536 (579)
.+.|+ +.++..-..+|.-..+++.|+.-|+++.+.+|++..+-
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 56664 77888888899888999999999999999999886543
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=7e-09 Score=87.75 Aligned_cols=408 Identities=12% Similarity=0.078 Sum_probs=251.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHH
Q 036340 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204 (579)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (579)
+.+.+..+.+..++++|++++..-.+ ..|.+....+.++.+|....++..|-..++++. ...|...-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~E---r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~----------ql~P~~~q 79 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELE---RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLG----------QLHPELEQ 79 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhChHHHH
Confidence 55566667778888888888887666 445566778888889999999999999998885 22454444
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHhcCCCCh-hH--HHHHHHHHHhcCChHHHHHHhhcCC-CCChhhHHHHHHHHHhcCC
Q 036340 205 WN-SMIMCYAKAGDVVSAREIFEQMLERDT-FS--WNTMISGYIHVLDMEEASNLFVKMP-HPDTLTWNAMVSGYAQIGN 279 (579)
Q Consensus 205 ~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 279 (579)
|. .-...+.+.+.+..|+++...|.+.+. .. ...-.......+++..+..++++.. +.+..+.+.......+.|+
T Consensus 80 YrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 80 YRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecccc
Confidence 43 335667788889999999988877522 11 1111233456788888888888876 4666777777777889999
Q ss_pred HHHHHHHHccCCC----CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhc-cCCCchhhHHHHHH
Q 036340 280 LELALDFFKRMPQ----KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS-SGIVDLHLGMQIHQ 354 (579)
Q Consensus 280 ~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~ 354 (579)
++.|.+-|+...+ .....|+.-+ +..+.|+++.|+++..++++.|++..+. ++.-+..- ...+.+..-..++.
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchhcccchHHHHH
Confidence 9999999998876 3345666544 4457889999999999999998763221 11000000 00000000000000
Q ss_pred HHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc----CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036340 355 MVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK----LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430 (579)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 430 (579)
. .-+..++.-...+.+.++++.|.+.+..|+ ...|+++...+.-.- ..+++.+..+-++-+.+ +.|-
T Consensus 238 S------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~--~nPf 308 (459)
T KOG4340|consen 238 S------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ--QNPF 308 (459)
T ss_pred H------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh--cCCC
Confidence 0 012334555566778899999999999986 234666665543322 24556666666666664 4553
Q ss_pred -hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCC-CCCcchhHHHHHHhh-ccCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 036340 431 -YITFISVLSACAHAGLVEEGRQHFKSMVNEYGI-EPRIEHFASLVDIVG-RHGRLEDAMDLIKGMPFEPDKAVWGALLG 507 (579)
Q Consensus 431 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 507 (579)
..||..++-.|++..-++.|-.++.+-... .. -.+...|+ +.+++. ..-..++|.+-+..+........-...+.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~ 386 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQ 386 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999998876432110 00 01222233 333333 34566777766655421110111111111
Q ss_pred H--HhhcCC---HHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHh
Q 036340 508 A--CRVHNN---VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561 (579)
Q Consensus 508 ~--~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (579)
. -...++ ...+++-|+..+++.- .+....++.|.+..++..+.++|+.-.+
T Consensus 387 vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 387 VQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 1 111111 2345555666655432 1367778999999999999999987543
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.21 E-value=1.7e-08 Score=94.71 Aligned_cols=386 Identities=12% Similarity=0.129 Sum_probs=237.1
Q ss_pred HHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHH
Q 036340 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER---DTFSWNT 238 (579)
Q Consensus 162 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 238 (579)
|..++. +...+++...++..+.+.. +++....+.....-.+...|+.++|.......+.. +.+.|..
T Consensus 11 F~~~lk-~yE~kQYkkgLK~~~~iL~---------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv 80 (700)
T KOG1156|consen 11 FRRALK-CYETKQYKKGLKLIKQILK---------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHV 80 (700)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHH---------hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHH
Confidence 334444 3455677777777777762 33444455555555667778888888888777665 3456777
Q ss_pred HHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhCCCch
Q 036340 239 MISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ---KNLVSWNSMIAGCETNKDYE 312 (579)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 312 (579)
+.-.+....++++|+.+|+.+. +.|...+.-+.-.-++.|+++..........+ .....|..++.++.-.|++.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 7777788888999999988877 55667777776666777777776666665554 33457788888888888999
Q ss_pred HHHHHHHHHHHcC-CCCChhhHHHHHH------hccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHH
Q 036340 313 GAIKLFIQMQVEG-EKPDRHTFSSILS------MSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARI 385 (579)
Q Consensus 313 ~a~~~~~~~~~~~-~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 385 (579)
.|..+++...+.. -.|+...+..... .....|..+.+.+.+...+..+......-..-...+.+.+++++|..
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 9988888887654 2456555544332 33466777777777766555555555555666777888888888888
Q ss_pred HHHhcc-CCCCeeeHHHHH-HHHHhcCChHHHH-HHHHHh----------------------------------HhCCCC
Q 036340 386 IFEEMK-LLKNVVSWNAMI-GGCASHGFATEAL-ELFKSM----------------------------------RSFKVL 428 (579)
Q Consensus 386 ~~~~~~-~~~~~~~~~~l~-~~~~~~~~~~~A~-~~~~~~----------------------------------~~~~~~ 428 (579)
++..+. ..||...|.... .++.+..+..+++ .+|... .+.|++
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 888775 345555444333 3332222222222 333333 333332
Q ss_pred CChhhHHHHHHHhcccCcHHHHHHHHHHhHHhh-------CC----------CCCcchh--HHHHHHhhccCChHHHHHH
Q 036340 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEY-------GI----------EPRIEHF--ASLVDIVGRHGRLEDAMDL 489 (579)
Q Consensus 429 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~----------~~~~~~~--~~l~~~~~~~g~~~~A~~~ 489 (579)
+-...+.++ |-.-...+ ++++.+..+ +. +|....| ..++..+-+.|+++.|..+
T Consensus 321 ~vf~dl~SL---yk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y 393 (700)
T KOG1156|consen 321 SVFKDLRSL---YKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY 393 (700)
T ss_pred chhhhhHHH---HhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 222222211 11111111 222222111 00 2232222 3456667778888888888
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 490 IKGM-PFEPDK-AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 490 ~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
++.. ...|.. ..|..-.+.+...|+.++|...++++.+++-.|..+-..-+.-..++++.++|.++.....+.|.
T Consensus 394 Id~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 394 IDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 8776 445543 34555557777778888888888888887766544333556666778888888888877766654
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=3.9e-10 Score=104.10 Aligned_cols=214 Identities=15% Similarity=0.124 Sum_probs=160.4
Q ss_pred CCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-C-CCCeeeHHHHHHHHHhcCChHHHHHHH
Q 036340 342 GIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-L-LKNVVSWNAMIGGCASHGFATEALELF 419 (579)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 419 (579)
+.|+...|.-.|+..-+..|.+...|..|.......++-..|+..+.+.. . +.|....-.|.-.|...|.-..|++.+
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred hcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 44445555555555555555666677777777777777777777776653 2 335556667777788888778888888
Q ss_pred HHhHhCCCCCChhhHHHHH-----------HHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHH
Q 036340 420 KSMRSFKVLPTYITFISVL-----------SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMD 488 (579)
Q Consensus 420 ~~~~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 488 (579)
+.-+... |. |..+. ..+.....+....++|-++....+..+|+.+...|+-.|.-.|++++|.+
T Consensus 377 ~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 377 DKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 7775432 11 00000 12333344556677777777665666788899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 489 LIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 489 ~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
.|+.+ ..+| |...||.|+..+....+.++|+..|.+++++.|....+.+.|+-.|...|.|++|.++|=..+
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99987 6677 778999999999999999999999999999999999999999999999999999999987654
No 87
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=2.9e-07 Score=90.89 Aligned_cols=510 Identities=12% Similarity=0.147 Sum_probs=274.3
Q ss_pred hhhhhcCCCHHHHHHHhccCCC--C-----chhHHHHHHHHHHHcCCCCChHHHHHHHhhCC----CCCcchHHHHHHHH
Q 036340 2 ISGYVKRREMAKARKLFDEMPQ--R-----DVVSWNVMISGYISSRGSGFLEEARYLFDIMP----ERDCVTWNTVISGY 70 (579)
Q Consensus 2 ~~~~~~~~~~~~A~~~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~ 70 (579)
.+.|-+.|-+..|++-|..+.. + +.-.-..++.-+... . ++.+.+.++.|. +.|..+.-.+..-|
T Consensus 613 AqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~l-s---ve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 613 AQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSL-S---VEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3556778888888877777653 1 111122233333322 2 777777777776 34555555555555
Q ss_pred HccCCHHHHHHHhhcCC---------------CCchhhHHHHHHHHHhcCChhhHHHHHccCCC----------------
Q 036340 71 AKTGEMEEALRLFNSMP---------------ARNVVSWNAMISGFLQNGDVANAIEFFDRMPG---------------- 119 (579)
Q Consensus 71 ~~~g~~~~A~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------- 119 (579)
...=-.+.-+++|+... ..|+....-.|.+.++.|++.+..++.++-.-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 55555566667777654 34666667788888888888888877765421
Q ss_pred ---C-----CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCC-----------chhhHHH-------------HHH
Q 036340 120 ---R-----DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGED-----------LVRAYNT-------------LIV 167 (579)
Q Consensus 120 ---~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~~-------------l~~ 167 (579)
| |..-+-.=+-.|.-.++..+-+++|-+-..- +..| +...... +..
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNp--s~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNP--SRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCC--cccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 0 1111111122223333444444444332110 1111 0111111 111
Q ss_pred HHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 036340 168 GYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL 247 (579)
Q Consensus 168 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (579)
-.-+.++..--...++... ..| ..+..++|++...|...++-.+- .++.|+.--...+.-|+...
T Consensus 847 EvEkRNRLklLlp~LE~~i--------~eG-~~d~a~hnAlaKIyIDSNNnPE~------fLkeN~yYDs~vVGkYCEKR 911 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLI--------QEG-SQDPATHNALAKIYIDSNNNPER------FLKENPYYDSKVVGKYCEKR 911 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHH--------hcc-CcchHHHhhhhheeecCCCChHH------hcccCCcchhhHHhhhhccc
Confidence 1222333333344444443 223 45677788888887766543321 12222222222333444444
Q ss_pred ChHHHHHHhhcCC--------CCChhhHHHHHHHHHhcCCHHHHHHHH-----------ccCC------CCChhhHHHHH
Q 036340 248 DMEEASNLFVKMP--------HPDTLTWNAMVSGYAQIGNLELALDFF-----------KRMP------QKNLVSWNSMI 302 (579)
Q Consensus 248 ~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~-----------~~~~------~~~~~~~~~l~ 302 (579)
++.-|.-.|++-. -.....|....+-+.+..+.+.=.+++ +++. ..|+......+
T Consensus 912 DP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tV 991 (1666)
T KOG0985|consen 912 DPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTV 991 (1666)
T ss_pred CCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHH
Confidence 4433333333322 011122333333333333332222222 1111 14555566667
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCC-CChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCC------------------
Q 036340 303 AGCETNKDYEGAIKLFIQMQVEGEK-PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD------------------ 363 (579)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------ 363 (579)
.++...+-+.+-+++++++.-.... .....+..++-.-+-..+.....++.+....-..|+
T Consensus 992 kAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~if 1071 (1666)
T KOG0985|consen 992 KAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIF 1071 (1666)
T ss_pred HHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHH
Confidence 7777777777777777776533211 111112222211111222223333332222211121
Q ss_pred ------chHHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHH
Q 036340 364 ------VPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437 (579)
Q Consensus 364 ------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 437 (579)
....+.|+. .-++++.|.++-++.. .+..|..+..+-.+.|...+|++-|-+. .|+..|..+
T Consensus 1072 kkf~~n~~A~~VLie---~i~~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eV 1139 (1666)
T KOG0985|consen 1072 KKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEV 1139 (1666)
T ss_pred HHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHH
Confidence 111111111 1233444444433332 3457889999999999999998877543 356789999
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 036340 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517 (579)
Q Consensus 438 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 517 (579)
++...+.|.|++-.+++.-+.++ ...|.++ ..|+-+|++.++..+-.+++. .|+......++.-|...|.++.
T Consensus 1140 i~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~a 1212 (1666)
T KOG0985|consen 1140 IDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEA 1212 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHH
Confidence 99999999999999998766544 5566555 467889999999998887763 5888888889999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHH
Q 036340 518 AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559 (579)
Q Consensus 518 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (579)
|.-+|.- ..-|..|+..+...|.|+.|...-++.
T Consensus 1213 Akl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1213 AKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8887764 334778888888888888777655543
No 88
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=5.8e-10 Score=95.37 Aligned_cols=222 Identities=12% Similarity=0.042 Sum_probs=172.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCC--CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHH-HHHHhccCCC
Q 036340 268 NAMVSGYAQIGNLELALDFFKRMPQ--KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS-SILSMSSGIV 344 (579)
Q Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~ 344 (579)
+.+..+|.+.|-+.+|.+.|+...+ +-+.+|..|...|.+..++..|+.++.+-.+. .|...|+. .+.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5567777888888888877776654 66667777777888888888888887776553 44444443 4455666777
Q ss_pred chhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHh
Q 036340 345 DLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSM 422 (579)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 422 (579)
+.+.+.++++...+..+.++....++...|.-.++++-|..+|+.+. -..++..|+.+.-+|.-.++++-++..|++.
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 77888888887777777777777888888888899999999998764 2456778888888999999999999999998
Q ss_pred HhCCCCCChh--hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC
Q 036340 423 RSFKVLPTYI--TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 423 ~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 493 (579)
...--.|+.. .|..+.......|++..|.+.|+-.+.. -....+.++.|+-.-.+.|++++|..++...
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 8766556543 7888888888999999999999988753 2335678889988889999999999999887
No 89
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=4.5e-11 Score=75.51 Aligned_cols=50 Identities=30% Similarity=0.503 Sum_probs=47.0
Q ss_pred CCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcc
Q 036340 394 KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443 (579)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 443 (579)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998874
No 90
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=6.6e-10 Score=105.30 Aligned_cols=197 Identities=22% Similarity=0.272 Sum_probs=125.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhccC---CCC-CCCc-hhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccC
Q 036340 124 SLSALVSGLIQNGELDEAARVLVKCGSR---CDG-GEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198 (579)
Q Consensus 124 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 198 (579)
+...+...|...|+++.|+.+++.++.. ..| ..+. ....+.++..|...+++++|..+|+++.+......|. ..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~-~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE-DH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC-CC
Confidence 4555889999999999999999988763 001 1222 2345568889999999999999999987433221111 11
Q ss_pred CcchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C---Ch-hHHHHHHHHHHhcCChHHHHHHhhcCC-------
Q 036340 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE-------R---DT-FSWNTMISGYIHVLDMEEASNLFVKMP------- 260 (579)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~------- 260 (579)
+.-..+++.|...|.+.|++++|...++...+ . .+ ..++.++..+...+.+++|..+++...
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 23466788888999999999999888877633 1 11 235556666777777777777766544
Q ss_pred CCC----hhhHHHHHHHHHhcCCHHHHHHHHccCCC-------C----ChhhHHHHHHHHHhCCCchHHHHHHHHH
Q 036340 261 HPD----TLTWNAMVSGYAQIGNLELALDFFKRMPQ-------K----NLVSWNSMIAGCETNKDYEGAIKLFIQM 321 (579)
Q Consensus 261 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (579)
.++ ..+++.|...|...|++++|.++++++.+ . ....++.|...|.+.++++.|..+|.+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 111 23566666666666666666666665542 0 0123455555565666666666655553
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.16 E-value=3.6e-08 Score=96.99 Aligned_cols=496 Identities=13% Similarity=0.018 Sum_probs=299.2
Q ss_pred hHHHHHHHhhCCCCCc---chHHHHHHHHHccCCHHHHHHHhhcCC---CCchhhHHHHHHHHHhcCChhhHHHHHccCC
Q 036340 45 LEEARYLFDIMPERDC---VTWNTVISGYAKTGEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118 (579)
Q Consensus 45 ~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 118 (579)
...|...|-+..+.|+ ..|..|...|+..-+...|.+.|+... ..+..++....+.|.+..+++.|..+.-...
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 6777777777776555 368899999988889999999999887 3556788899999999999999999854433
Q ss_pred CCC-----cchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCC
Q 036340 119 GRD-----SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193 (579)
Q Consensus 119 ~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 193 (579)
+.+ ...|....-.+...++..+|+..|+.+.. ..|.|...|..++.+|.+.|.+..|.++|.++.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR---~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs------- 623 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR---TDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS------- 623 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc---CCchhHHHHHHHHHHHHhcCceehHHHhhhhhH-------
Confidence 322 22344455567788999999999999998 678889999999999999999999999999886
Q ss_pred CCccCCcch-HHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------ChhHHHHHHHHHHhcCChHHHHHHhhcCC--
Q 036340 194 GNVRFKRNI-VSWNSMIMCYAKAGDVVSAREIFEQMLER----------DTFSWNTMISGYIHVLDMEEASNLFVKMP-- 260 (579)
Q Consensus 194 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 260 (579)
-+.|+. ..-.-.....+..|.+.+|...+...+.. -..++..+...+...|-..+|...+++..
T Consensus 624 ---~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 624 ---LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred ---hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 334442 22222334456789999999888877432 11222223333333333333333333322
Q ss_pred ---------CCChhhHHH-------------------HHHHHHh----cCCH---H---HHHHHHccCCC--CChhhHHH
Q 036340 261 ---------HPDTLTWNA-------------------MVSGYAQ----IGNL---E---LALDFFKRMPQ--KNLVSWNS 300 (579)
Q Consensus 261 ---------~~~~~~~~~-------------------l~~~~~~----~g~~---~---~A~~~~~~~~~--~~~~~~~~ 300 (579)
..+...|.. ++..+.. .+.. + -+.+.+-.-.+ .+..+|..
T Consensus 701 f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyN 780 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYN 780 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHH
Confidence 011111111 1111111 1111 0 01111110000 23445555
Q ss_pred HHHHHHh----CC----CchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHH
Q 036340 301 MIAGCET----NK----DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALIT 372 (579)
Q Consensus 301 l~~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 372 (579)
|+..|.+ .+ +...|+..+.+.++.. .-+..+++ .+......|++..+..-|-......+.+..+|..+..
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~Wn-aLGVlsg~gnva~aQHCfIks~~sep~~~~~W~Nlgv 858 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWN-ALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGV 858 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHH-HHHHhhccchhhhhhhhhhhhhhccccchhheeccce
Confidence 5554433 11 2235677777765532 12334444 4444466678877777776666667777888888888
Q ss_pred HhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhH----hCCCCCChhhHHHHHHHhcccCc
Q 036340 373 MYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMR----SFKVLPTYITFISVLSACAHAGL 446 (579)
Q Consensus 373 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~~~ 446 (579)
.+....+++.|...|.... .+.+...|..........|+.-++..+|..-- ..|--|...-+.........+|+
T Consensus 859 L~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 859 LVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred eEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 8899999999999998876 33456667666666666787778888776621 22333443333333334445565
Q ss_pred HHHHHHHH----------HHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC----CCCCCHHHHH----HHHHH
Q 036340 447 VEEGRQHF----------KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM----PFEPDKAVWG----ALLGA 508 (579)
Q Consensus 447 ~~~a~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~----~l~~~ 508 (579)
.++-+... +.... +.+.....|...+....+.+.+.+|.....+. ..+-+...++ .+.+.
T Consensus 939 ~e~~I~t~~ki~sAs~al~~yf~--~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL 1016 (1238)
T KOG1127|consen 939 IEESINTARKISSASLALSYYFL--GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRL 1016 (1238)
T ss_pred hHHHHHHhhhhhhhHHHHHHHHh--cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 55443332 23332 33445677777777778888888887776654 2222333333 44566
Q ss_pred HhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 509 CRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 509 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
+...|+++.|...+.....-.-.+. .......+-.|+++++++.|+++.
T Consensus 1017 ~lslgefe~A~~a~~~~~~evdEdi---~gt~l~lFfkndf~~sl~~fe~aL 1065 (1238)
T KOG1127|consen 1017 ELSLGEFESAKKASWKEWMEVDEDI---RGTDLTLFFKNDFFSSLEFFEQAL 1065 (1238)
T ss_pred hhhhcchhhHhhhhcccchhHHHHH---hhhhHHHHHHhHHHHHHHHHHHHh
Confidence 6677777766544332211000010 111122356788999999999875
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=1.5e-08 Score=82.89 Aligned_cols=168 Identities=13% Similarity=0.030 Sum_probs=99.1
Q ss_pred CchHHHHHHHHhhhcCCHHHHHHHHHhcc-C-CCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh-hhHHHHHH
Q 036340 363 DVPINNALITMYARCGAIVEARIIFEEMK-L-LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY-ITFISVLS 439 (579)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~ 439 (579)
+..++..+...|.+.|..+.|.+.|+... . +.+..+.|....-+|..|++++|...|++....-.-|.. .+|..+..
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 33444555666666666666666666543 2 334555666666666666666776666666643322322 36666666
Q ss_pred HhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHH
Q 036340 440 ACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM--PFEPDKAVWGALLGACRVHNNVE 516 (579)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 516 (579)
+..+.|+.+.|...|++.++. .| .+.....++......|++..|..+++.. ...++..++...++.-...||.+
T Consensus 148 Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred HHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHH
Confidence 666666777777666666532 33 3445556666666666666666666665 23355555555556566666666
Q ss_pred HHHHHHHHHhhcCCCCC
Q 036340 517 LAQVAAEALMKVEPENS 533 (579)
Q Consensus 517 ~A~~~~~~~~~~~p~~~ 533 (579)
.+.+.=.++....|...
T Consensus 225 ~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 225 AAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHHHHhCCCcH
Confidence 66666555666666644
No 93
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=8.7e-09 Score=93.93 Aligned_cols=195 Identities=17% Similarity=0.172 Sum_probs=125.5
Q ss_pred chHHHHHHHHhhhcCCHHHHHHHHHhcc-C-CCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh-hhHHHHHHH
Q 036340 364 VPINNALITMYARCGAIVEARIIFEEMK-L-LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY-ITFISVLSA 440 (579)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 440 (579)
...+..+...|...|+.++|...|++.. . +.+...|+.+...+...|++++|+..|++..+ +.|+. .++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4457777778888888888888887764 2 33456788888888888888888888888874 45654 367777777
Q ss_pred hcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHH
Q 036340 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM--PFEPDKAVWGALLGACRVHNNVELA 518 (579)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A 518 (579)
+...|++++|.+.++...+. .|+..............++.++|...+.+. ...|+...+ .+. ....|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~--~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIV--EFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHH--HHHccCCCHH
Confidence 78888888888888887743 443322222222344567788888888554 223332222 122 2223443332
Q ss_pred HHHHHHHh-------hcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCCC
Q 036340 519 QVAAEALM-------KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567 (579)
Q Consensus 519 ~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 567 (579)
..++.+. ++.|..+.+|..++.++.+.|++++|...|++..+.+++..
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 2333332 34555666788888888888888888888888877665433
No 94
>PF13041 PPR_2: PPR repeat family
Probab=99.13 E-value=1.5e-10 Score=73.09 Aligned_cols=50 Identities=30% Similarity=0.553 Sum_probs=47.5
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccC
Q 036340 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342 (579)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (579)
||+.+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999988764
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.8e-08 Score=92.62 Aligned_cols=423 Identities=12% Similarity=0.052 Sum_probs=246.6
Q ss_pred HHHHHhcCChhhHHHHHccCCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCC
Q 036340 98 ISGFLQNGDVANAIEFFDRMPG---RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174 (579)
Q Consensus 98 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 174 (579)
.++.+..||++.|+.+|.+... +|...|..-..+|.+.|++++|++--.+.++ ..|..+..|+..+.++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhccc
Confidence 4567788999999999987543 4666788888899999999999888888777 556677789999999999999
Q ss_pred HHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHH-----HHHHhcCCh
Q 036340 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMI-----SGYIHVLDM 249 (579)
Q Consensus 175 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~ 249 (579)
+++|+.-|.+-... -+.+...++.+..++ ..+.+. -+.. .++..|..+. +.+.....+
T Consensus 86 ~~eA~~ay~~GL~~---------d~~n~~L~~gl~~a~----~~~~~~--~~~~--~~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 86 YEEAILAYSEGLEK---------DPSNKQLKTGLAQAY----LEDYAA--DQLF--TKPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred HHHHHHHHHHHhhc---------CCchHHHHHhHHHhh----hHHHHh--hhhc--cCcHHHHHhhcChhhhhhhccHHH
Confidence 99999999887621 134566667777766 111111 1111 1233332222 112222222
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHh-CCCch----HHHHHHHHHHH-
Q 036340 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCET-NKDYE----GAIKLFIQMQV- 323 (579)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~----~a~~~~~~~~~- 323 (579)
..-+..++.-. +. +..|..-.++..+.-.+...... .+......... ...+. .......++.+
T Consensus 149 ~~~l~~~~~~p--~~------l~~~l~d~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee 217 (539)
T KOG0548|consen 149 VKILEIIQKNP--TS------LKLYLNDPRLMKADGQLKGVDEL---LFYASGIEILASMAEPCKQEHNGFPIIEDNTEE 217 (539)
T ss_pred HHHHHHhhcCc--Hh------hhcccccHHHHHHHHHHhcCccc---cccccccccCCCCCCcccccCCCCCccchhHHH
Confidence 22222222111 00 00111111111111111111100 00000000000 00000 00000000000
Q ss_pred cCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCC-------
Q 036340 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLKN------- 395 (579)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~------- 395 (579)
.....-..-...+..+..+..++..+.+-+....... .+..-++....+|...|.+..+...-.... ....
T Consensus 218 ~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~kl 296 (539)
T KOG0548|consen 218 RRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKL 296 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHH
Confidence 0001112234455566667777777777777633323 566666777777888777776665544322 0000
Q ss_pred -eeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcc-hhHHH
Q 036340 396 -VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE-HFASL 473 (579)
Q Consensus 396 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l 473 (579)
...+..+..+|.+.++++.|+..|++.......|+.. .+....+++....+... -+.|... -...-
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~k 364 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREK 364 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHH
Confidence 0112234446666788888888888876554444322 23344455555444332 3344331 12233
Q ss_pred HHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchH
Q 036340 474 VDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551 (579)
Q Consensus 474 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 551 (579)
+..+.+.|++.+|+..+.++ ...| |...|....-+|.+.|.+..|+.-.+..++++|+.+..|..=+.++....+|++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 66778999999999999988 3345 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 036340 552 ANEVRLLMKSNNI 564 (579)
Q Consensus 552 A~~~~~~~~~~~~ 564 (579)
|.+.+.+..+.+.
T Consensus 445 Aleay~eale~dp 457 (539)
T KOG0548|consen 445 ALEAYQEALELDP 457 (539)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999877663
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.12 E-value=2.9e-08 Score=95.64 Aligned_cols=124 Identities=14% Similarity=0.133 Sum_probs=81.8
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR-IEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGAC 509 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 509 (579)
++..+...|...|++++|++++++.+.. .|+ ++.|..-+++|-+.|++.+|.+.++.. ...+ |...-+..+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 4455566777788888888888877743 553 667777777888888888888877777 2333 444455555667
Q ss_pred hhcCCHHHHHHHHHHHhhcC--CCCC-------CCchhhhhhhhhcCCchHHHHHHHHH
Q 036340 510 RVHNNVELAQVAAEALMKVE--PENS-------TPYVLLYNMYADVGRWDDANEVRLLM 559 (579)
Q Consensus 510 ~~~~~~~~A~~~~~~~~~~~--p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (579)
.+.|++++|...+..-.+.+ |... ......+.+|.+.|++..|+..+..+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77888888877776654433 2110 11234467888888888887776554
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=7.8e-08 Score=81.58 Aligned_cols=313 Identities=13% Similarity=0.110 Sum_probs=197.3
Q ss_pred hhhhcCCCHHHHHHHhccCCCC---chhHHHHHHHHHHHcCCCCChHHHHHHHhhCCC--CCcchHH-HHHHHHHccCCH
Q 036340 3 SGYVKRREMAKARKLFDEMPQR---DVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--RDCVTWN-TVISGYAKTGEM 76 (579)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~-~l~~~~~~~g~~ 76 (579)
..+.+..++++|++++..-.++ +....+.|..+|....+ +..|...++++.. |...-|. --...+.+.+.+
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~---f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE---FALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence 4457888999999999987763 45567788889999988 9999999999984 3333332 224556688999
Q ss_pred HHHHHHhhcCCC-CchhhHHHHH--HHHHhcCChhhHHHHHccCCC-CCcchHHHHHHHHHhCCCHHHHHHHHHHhccCC
Q 036340 77 EEALRLFNSMPA-RNVVSWNAMI--SGFLQNGDVANAIEFFDRMPG-RDSASLSALVSGLIQNGELDEAARVLVKCGSRC 152 (579)
Q Consensus 77 ~~A~~~~~~~~~-~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 152 (579)
.+|+++...|.+ ++...-..-+ ......+|+..+..++++.+. .+..+.......+.+.|+++.|.+-|..+.+-+
T Consensus 95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 999999999985 3333222222 334568999999999999985 667777777778889999999999999998863
Q ss_pred CCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCC-----cch---------------HHHHHHHHHH
Q 036340 153 DGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK-----RNI---------------VSWNSMIMCY 212 (579)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~~~---------------~~~~~l~~~~ 212 (579)
|..| ..+|+. .-+..+.|+++.|.++..+++..--+.+.+.|+. ||+ ..+|.-...+
T Consensus 175 -Gyqp-llAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIe 251 (459)
T KOG4340|consen 175 -GYQP-LLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIE 251 (459)
T ss_pred -CCCc-hhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhh
Confidence 3333 345654 4456678999999999988874322222222221 111 1123333345
Q ss_pred HhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHhc--CChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 036340 213 AKAGDVVSAREIFEQMLER-----DTFSWNTMISGYIHV--LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALD 285 (579)
Q Consensus 213 ~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 285 (579)
.+.|+++.|.+.+-.|..+ |+.|...+.-.-... ++-..-+..+-...+-...||..++-.|++..-++.|-+
T Consensus 252 yq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAAD 331 (459)
T KOG4340|consen 252 YQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAAD 331 (459)
T ss_pred hhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHH
Confidence 5677888888777777543 666665543222211 111122222222223334577777777777777777777
Q ss_pred HHccCCC-----CChhhHHHHHHHHHhCCCchHHHHHHHHH
Q 036340 286 FFKRMPQ-----KNLVSWNSMIAGCETNKDYEGAIKLFIQM 321 (579)
Q Consensus 286 ~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (579)
++.+-.. -+...|+.|=..-......++|.+-+..+
T Consensus 332 vLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 332 VLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7765433 22333333322222334455555544443
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.08 E-value=1e-07 Score=82.55 Aligned_cols=293 Identities=14% Similarity=0.095 Sum_probs=157.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHH-HH
Q 036340 128 LVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS-WN 206 (579)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 206 (579)
+...+...|++.+|+..|..+++ +.|.+-.++..-...|...|+-..|+.=+...+ .++||... ..
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve---~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl----------elKpDF~~ARi 110 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVE---GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL----------ELKPDFMAARI 110 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHc---CCchhHHHHHHHHHHHhhhcCCccchhhHHHHH----------hcCccHHHHHH
Confidence 44555555566666666655555 445555555555555555555555555555554 23454221 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCh------------------hHHHHHHHHHHhcCChHHHHHHhhcCC---CCChh
Q 036340 207 SMIMCYAKAGDVVSAREIFEQMLERDT------------------FSWNTMISGYIHVLDMEEASNLFVKMP---HPDTL 265 (579)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~ 265 (579)
.-...+.+.|.++.|..-|+.+++.++ ......+..+...|+...|+.....++ +-|..
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~ 190 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDAS 190 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence 223445556666666666665544322 011122334455566666666666555 45566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccC
Q 036340 266 TWNAMVSGYAQIGNLELALDFFKRMP---QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG 342 (579)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (579)
.+..-..+|...|++..|+.=++.+. +.+...+..+-..+...|+.+.++...++.++. .||....-....
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK---- 264 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK---- 264 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH----
Confidence 66666777777777777766555443 345556666666666777777777777766553 444332211110
Q ss_pred CCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCC-----eeeHHHHHHHHHhcCChHHHH
Q 036340 343 IVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLKN-----VVSWNAMIGGCASHGFATEAL 416 (579)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~~~~~~A~ 416 (579)
.+....+.++ -+......+++.++.+..+... ..|. ...+..+-.++...+++.+|+
T Consensus 265 --klkKv~K~le---------------s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 265 --KLKKVVKSLE---------------SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred --HHHHHHHHHH---------------HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence 0000000000 0112233455555555555432 2332 123444555666677777777
Q ss_pred HHHHHhHhCCCCCCh-hhHHHHHHHhcccCcHHHHHHHHHHhH
Q 036340 417 ELFKSMRSFKVLPTY-ITFISVLSACAHAGLVEEGRQHFKSMV 458 (579)
Q Consensus 417 ~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 458 (579)
+.-.+.. .+.|+. .++.--..+|.-...++.|+.-|+.+.
T Consensus 328 qqC~evL--~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 328 QQCKEVL--DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHH--hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 7777777 345653 366666677777777777777777665
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=2.7e-06 Score=84.37 Aligned_cols=321 Identities=12% Similarity=0.146 Sum_probs=155.7
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCc
Q 036340 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200 (579)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 200 (579)
|+...+..+.++...+-..+-+++++++.-.......+...-+.++-...+ -+..+..++.+++. ... .|
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLd--------nyD-a~ 1052 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLD--------NYD-AP 1052 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhc--------cCC-ch
Confidence 444445555555555555555555555544322222222223333332222 23334444444442 000 11
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCH
Q 036340 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNL 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 280 (579)
+ +...+...+-+++|..+|++..- +..+.+.++. .-++.+.|.+.-++.. .+.+|+.+..+-.+.|..
T Consensus 1053 ~------ia~iai~~~LyEEAF~ifkkf~~-n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1053 D------IAEIAIENQLYEEAFAIFKKFDM-NVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred h------HHHHHhhhhHHHHHHHHHHHhcc-cHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCch
Confidence 1 23334444455555555554311 1111111111 2234444444444432 234555566666666666
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcC
Q 036340 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360 (579)
Q Consensus 281 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 360 (579)
.+|++-|-+. .|+..|..++....+.|.|++-...+....+..-.|...+ .++-+|++.++..+-+.+ -.
T Consensus 1121 ~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~f------i~ 1190 (1666)
T KOG0985|consen 1121 KDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEF------IA 1190 (1666)
T ss_pred HHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHH------hc
Confidence 6666555433 3444555666666666666666665555544443343332 344455554444333222 22
Q ss_pred CCCchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHH
Q 036340 361 IPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440 (579)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 440 (579)
.|+......+.+-+...+.++.|.-+|..+. -|..|...+...|++..|....++.- +..||..+-.+
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS------N~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS------NFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFA 1258 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHH
Confidence 3444444555555555555555555554332 46666666777777777766555432 33466666666
Q ss_pred hcccCcHHHHHHHHHHhHHhhCCC--CCcchhHHHHHHhhccCChHHHHHHHHhC
Q 036340 441 CAHAGLVEEGRQHFKSMVNEYGIE--PRIEHFASLVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 493 (579)
|...+.+.-|.-+ |+. ...+-...++.-|...|.+++-+.+++..
T Consensus 1259 Cvd~~EFrlAQiC--------GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1259 CVDKEEFRLAQIC--------GLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HhchhhhhHHHhc--------CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 6666555444221 222 23344556677777777777777777654
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=2.2e-07 Score=88.35 Aligned_cols=298 Identities=10% Similarity=-0.081 Sum_probs=173.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHccCCC---CChh---hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHH---
Q 036340 265 LTWNAMVSGYAQIGNLELALDFFKRMPQ---KNLV---SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSS--- 335 (579)
Q Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 335 (579)
..+..+...+...|+.+.+...+....+ ++.. ........+...|++++|...+++..+.... +...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHH
Confidence 3455555556666666665555544332 1211 1222234556678888888888887765321 2222221
Q ss_pred HHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-C-CCCeeeHHHHHHHHHhcCChH
Q 036340 336 ILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-L-LKNVVSWNAMIGGCASHGFAT 413 (579)
Q Consensus 336 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~ 413 (579)
........+....+.+.+.......+........+...+...|++++|...+++.. . +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 11111223444444444433222233334445566778888999999999998874 2 334566788888999999999
Q ss_pred HHHHHHHHhHhCCC-CCCh--hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchh-H--HHHHHhhccCChHHHH
Q 036340 414 EALELFKSMRSFKV-LPTY--ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF-A--SLVDIVGRHGRLEDAM 487 (579)
Q Consensus 414 ~A~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~ 487 (579)
+|+.++++...... .|+. ..|..+...+...|++++|..+++++.......+..... . .+...+...|....+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999998876422 1222 245567788899999999999999875321111111111 1 2233334444333333
Q ss_pred HH--H-HhC-CCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCC---------CCCCchhhhhhhhhcCCchH
Q 036340 488 DL--I-KGM-PFEP---DKAVWGALLGACRVHNNVELAQVAAEALMKVEPE---------NSTPYVLLYNMYADVGRWDD 551 (579)
Q Consensus 488 ~~--~-~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~ 551 (579)
+. + ... +..| ..........++...|+.+.|...++.+....-. ........+.++...|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 32 1 111 1111 1122224556678889999999999888652211 23345566778889999999
Q ss_pred HHHHHHHHHhCC
Q 036340 552 ANEVRLLMKSNN 563 (579)
Q Consensus 552 A~~~~~~~~~~~ 563 (579)
|.+.+.......
T Consensus 326 A~~~L~~al~~a 337 (355)
T cd05804 326 ALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=2.8e-08 Score=89.10 Aligned_cols=240 Identities=14% Similarity=0.135 Sum_probs=155.7
Q ss_pred hhhhhcCCCHHHHHHHhccCCC-C--chhHHHHHHHHHHHcCCCCChHHHHHHHhhCCCCCcchHHHHHHHHHccCCHHH
Q 036340 2 ISGYVKRREMAKARKLFDEMPQ-R--DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEE 78 (579)
Q Consensus 2 ~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 78 (579)
|+.++-.|+|..++...+.... + +...-.-+.++++..|+ ++..+.-......|.......+...+...++-+.
T Consensus 8 vrn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~---~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQ---YDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT----HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCC---hhHHHHHhccCCChhHHHHHHHHHHHhCccchHH
Confidence 4566778999999976662111 1 23345567788888877 8877766656556776666666666655466777
Q ss_pred HHHHhhcCC-CC----chhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCC
Q 036340 79 ALRLFNSMP-AR----NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCD 153 (579)
Q Consensus 79 A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 153 (579)
++.-++... .+ ++........++...|++++|++++... .+.......+..+.+.++++.|.+.++.+.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 777666554 22 2222223334566789999999988876 45566777888999999999999999998763
Q ss_pred CCCCchhhHHHHHHHHh----hCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036340 154 GGEDLVRAYNTLIVGYG----QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229 (579)
Q Consensus 154 ~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 229 (579)
.. | .+...++.++. ..+.+.+|..+|+++. ..+++++.+.+.++.+....|++++|.+++.+.+
T Consensus 161 -~e-D-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~---------~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 161 -DE-D-SILTQLAEAWVNLATGGEKYQDAFYIFEELS---------DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp -SC-C-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH---------CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred -CC-c-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHH---------hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 22 2 23333444333 2346899999999985 3456788889999999999999999999999887
Q ss_pred CCC---hhHHHHHHHHHHhcCCh-HHHHHHhhcCC
Q 036340 230 ERD---TFSWNTMISGYIHVLDM-EEASNLFVKMP 260 (579)
Q Consensus 230 ~~~---~~~~~~l~~~~~~~~~~-~~a~~~~~~~~ 260 (579)
+.+ +.+...++-+....|+. +.+.+.+.++.
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 653 44455555555555555 44555555554
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.99 E-value=8.2e-08 Score=86.10 Aligned_cols=246 Identities=13% Similarity=0.041 Sum_probs=143.9
Q ss_pred HHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 036340 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV 246 (579)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (579)
+-+.-.|++..++.-.+ .. ...-+.+......+.+++...|+++.++.-...-..|.......+...+...
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~--------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~ 79 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LK--------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSP 79 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CH--------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTS
T ss_pred HHHHHhhhHHHHHHHhh-cc--------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCc
Confidence 34455788988886555 22 1111234555667788999999988776665555556666666666555555
Q ss_pred CChHHHHHHhhcCC-C----CChhhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHH
Q 036340 247 LDMEEASNLFVKMP-H----PDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321 (579)
Q Consensus 247 ~~~~~a~~~~~~~~-~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (579)
++-+.++.-+++.. . .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66777777776655 1 22333333445677889999999999876 56677778889999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeH
Q 036340 322 QVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSW 399 (579)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~ 399 (579)
.+.+ +..+...+..+ .+..+...+++.+|..+|+++. ..+++.+.
T Consensus 158 ~~~~---eD~~l~qLa~a------------------------------wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~l 204 (290)
T PF04733_consen 158 QQID---EDSILTQLAEA------------------------------WVNLATGGEKYQDAFYIFEELSDKFGSTPKLL 204 (290)
T ss_dssp HCCS---CCHHHHHHHHH------------------------------HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHH
T ss_pred HhcC---CcHHHHHHHHH------------------------------HHHHHhCchhHHHHHHHHHHHHhccCCCHHHH
Confidence 8642 33344444332 2222322344555666665554 22344445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh-hhHHHHHHHhcccCcH-HHHHHHHHHhH
Q 036340 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTY-ITFISVLSACAHAGLV-EEGRQHFKSMV 458 (579)
Q Consensus 400 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~-~~a~~~~~~~~ 458 (579)
+.+..++...|++++|.+++.+.... .|+. .+...++.+....|+. +.+.+++.++.
T Consensus 205 ng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 205 NGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 55555556666666666666655432 2332 2444455554555554 44555555554
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.96 E-value=2.3e-08 Score=84.51 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=101.6
Q ss_pred HHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCCh
Q 036340 404 GGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483 (579)
Q Consensus 404 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 483 (579)
..|...|+++.+....+.+.. |. ..+...++.+++...++..++. -+.+...|..++..|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCH
Confidence 346677777665444332221 11 0122356667777777766643 234677778888888888888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHH-hhcCC--HHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHH
Q 036340 484 EDAMDLIKGM-PFEP-DKAVWGALLGAC-RVHNN--VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558 (579)
Q Consensus 484 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 558 (579)
++|...+++. ...| +...+..+..++ ...|+ .++|..+++++++.+|+++.++..++..+.+.|++++|...|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888776 4444 566777777653 56565 48888888888888888888888888888888888888888888
Q ss_pred HHhCCCCCC
Q 036340 559 MKSNNIKKP 567 (579)
Q Consensus 559 ~~~~~~~~~ 567 (579)
+.+...+..
T Consensus 170 aL~l~~~~~ 178 (198)
T PRK10370 170 VLDLNSPRV 178 (198)
T ss_pred HHhhCCCCc
Confidence 877665543
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=1.3e-06 Score=83.09 Aligned_cols=190 Identities=14% Similarity=0.073 Sum_probs=90.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHccCCC---CCcc---hHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHH--
Q 036340 93 SWNAMISGFLQNGDVANAIEFFDRMPG---RDSA---SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT-- 164 (579)
Q Consensus 93 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-- 164 (579)
.|..+...+...|+.+.+...+..... .+.. ........+...|++++|.+.++++.. ..|.+..++..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~---~~P~~~~a~~~~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD---DYPRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHhH
Confidence 445555555555555555444443221 1111 111122334455666666666666655 23333333331
Q ss_pred -HHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 036340 165 -LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243 (579)
Q Consensus 165 -l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 243 (579)
........+..+.+.+.++... ...+........+...+...|++++|...+++.++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~----------- 144 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA---------PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN----------- 144 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC---------cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------
Confidence 1111112333444444443321 1112222333344455555666666666665554422
Q ss_pred HhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHccCCC--C---Ch--hhHHHHHHHHHhCCCchHHHH
Q 036340 244 IHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ--K---NL--VSWNSMIAGCETNKDYEGAIK 316 (579)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~--~~~~~l~~~~~~~~~~~~a~~ 316 (579)
+.+...+..+...+...|++++|..++++..+ + +. ..|..+...+...|++++|..
T Consensus 145 -----------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 145 -----------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred -----------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 23344555566666666666666666665543 1 11 124456666777777777777
Q ss_pred HHHHHH
Q 036340 317 LFIQMQ 322 (579)
Q Consensus 317 ~~~~~~ 322 (579)
++++..
T Consensus 208 ~~~~~~ 213 (355)
T cd05804 208 IYDTHI 213 (355)
T ss_pred HHHHHh
Confidence 777764
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=5e-08 Score=86.45 Aligned_cols=183 Identities=12% Similarity=0.009 Sum_probs=124.0
Q ss_pred CCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCC-e---eeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh---
Q 036340 361 IPDVPINNALITMYARCGAIVEARIIFEEMK-LLKN-V---VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI--- 432 (579)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--- 432 (579)
......+..++..+...|+++.|...|+++. ..|+ . ..+..+..++...|++++|+..++++.+. .|+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchH
Confidence 3455667777788888888888888888764 2332 2 35567778888888888888888888754 34322
Q ss_pred -hHHHHHHHhccc--------CcHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHH
Q 036340 433 -TFISVLSACAHA--------GLVEEGRQHFKSMVNEYGIEPRI-EHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW 502 (579)
Q Consensus 433 -~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 502 (579)
++..+..++... |++++|.+.++.++.. .|+. .....+.... ...... ....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~ 169 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKE 169 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHH
Confidence 344555555544 6778888888888754 3432 2222111110 000000 0111
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC---CCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 503 GALLGACRVHNNVELAQVAAEALMKVEPENS---TPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 503 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
..+...+...|++.+|+..++++++..|+++ .++..++.++...|++++|..+++.+....
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2455678899999999999999999887764 578899999999999999999999887543
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.84 E-value=2.3e-08 Score=79.85 Aligned_cols=102 Identities=12% Similarity=0.003 Sum_probs=50.0
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC
Q 036340 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHN 513 (579)
Q Consensus 437 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~ 513 (579)
+...+...|++++|...|+.++. ..| +...+..++.++.+.|++++|...|++. ...| +...+..++.++...|
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 34444555555555555555442 223 3444455555555555555555555544 2222 4444455555555555
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCchhhhh
Q 036340 514 NVELAQVAAEALMKVEPENSTPYVLLYN 541 (579)
Q Consensus 514 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 541 (579)
++++|+..|+++++..|+++..+...+.
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 5555555555555555555544444433
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=1.6e-07 Score=95.88 Aligned_cols=210 Identities=13% Similarity=0.143 Sum_probs=172.8
Q ss_pred HhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCC-----CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCC
Q 036340 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLK-----NVVSWNAMIGGCASHGFATEALELFKSMRSFKVL 428 (579)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 428 (579)
.-...|.+...|...|......++.++|++++++.. +.+ -...|.++++.....|.-+...++|+++.+. -
T Consensus 1450 lvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--c 1527 (1710)
T KOG1070|consen 1450 LVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--C 1527 (1710)
T ss_pred HHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--c
Confidence 334455566778888888889999999999998874 211 2346888888888888888899999999853 2
Q ss_pred CChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC---CHHHHHH
Q 036340 429 PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP---DKAVWGA 504 (579)
Q Consensus 429 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~ 504 (579)
.....|..|...|.+.+.+++|.++++.|.++++ .....|..++..+.++.+-++|..+++++ ..-| .......
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 2234788899999999999999999999999766 67788999999999999999999999887 3233 3446666
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCCCCc
Q 036340 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569 (579)
Q Consensus 505 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 569 (579)
.+..-.+.||.+++..+|+..+.-.|.....|..++..-.++|+.+.++.+|+++...++++...
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 77778899999999999999999999999999999999999999999999999999988875543
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.8e-07 Score=86.98 Aligned_cols=246 Identities=11% Similarity=0.042 Sum_probs=157.0
Q ss_pred HHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHH
Q 036340 305 CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEAR 384 (579)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 384 (579)
+.+.|+..+|.-.|+..++.... +...|..+.......++-..|+..+.....-.|.+..+...|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 34455555555555555444221 34444444444445555555555555555555556666777778888888888888
Q ss_pred HHHHhcc-CCCCeeeHHHHH---------HHHHhcCChHHHHHHHHHhH-hCCCCCChhhHHHHHHHhcccCcHHHHHHH
Q 036340 385 IIFEEMK-LLKNVVSWNAMI---------GGCASHGFATEALELFKSMR-SFKVLPTYITFISVLSACAHAGLVEEGRQH 453 (579)
Q Consensus 385 ~~~~~~~-~~~~~~~~~~l~---------~~~~~~~~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 453 (579)
+.++... ..|. ..|.... ..+..........++|-++. ..+..+|+.....|.-.|--.|.+++|+..
T Consensus 374 ~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 8877652 1110 0000000 11111122334444444443 444346777777777788888999999999
Q ss_pred HHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhhcCC
Q 036340 454 FKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPDK-AVWGALLGACRVHNNVELAQVAAEALMKVEP 530 (579)
Q Consensus 454 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 530 (579)
|+.++ .++| |..+|+.|+-.++...+.++|+..|.++ ..+|.. .++..++-.|...|.+++|...|-.++.+.+
T Consensus 453 f~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99888 4467 6788999999999999999999999887 678864 4777888889999999999999998887665
Q ss_pred CC-----C-----CCchhhhhhhhhcCCchHHHHH
Q 036340 531 EN-----S-----TPYVLLYNMYADVGRWDDANEV 555 (579)
Q Consensus 531 ~~-----~-----~~~~~l~~~~~~~g~~~~A~~~ 555 (579)
.+ . .+|..|=.++.-.++.|-+.+.
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 41 1 2566666666677776644443
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.80 E-value=2.5e-07 Score=77.59 Aligned_cols=156 Identities=12% Similarity=0.069 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhc
Q 036340 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479 (579)
Q Consensus 400 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 479 (579)
..+-..+...|+-+....+..+... ....+.......+....+.|++..|...+++... .-++|...|+.++-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 4444555566666666666665432 1122223444466666677777777777776653 334566777777777777
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHH
Q 036340 480 HGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557 (579)
Q Consensus 480 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 557 (579)
.|++++|..-|.+. ...| ++...+++...+.-.|+.+.|..++..+....+.++.+-..|+.+...+|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777666555 3333 455667777777777777777777777776666667777777777777777777766654
Q ss_pred H
Q 036340 558 L 558 (579)
Q Consensus 558 ~ 558 (579)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.80 E-value=1e-05 Score=87.46 Aligned_cols=355 Identities=12% Similarity=-0.024 Sum_probs=217.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHHHHhcCChHHHHHHhhcCC----CCChhhHHHHHHHHHhcCCHHH
Q 036340 209 IMCYAKAGDVVSAREIFEQMLERDTF--SWNTMISGYIHVLDMEEASNLFVKMP----HPDTLTWNAMVSGYAQIGNLEL 282 (579)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 282 (579)
...+...|++..|..........+.. ............|+++.+...++.+. ..++.........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 34455566666666555554333211 11222334556688888878877763 1223333444555667899999
Q ss_pred HHHHHccCCC----CC---h-----hhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCh----hhHHHHHHhccCCCch
Q 036340 283 ALDFFKRMPQ----KN---L-----VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR----HTFSSILSMSSGIVDL 346 (579)
Q Consensus 283 A~~~~~~~~~----~~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 346 (579)
+..++..... .+ . .....+...+...|+++.|...+++....-...+. .....+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 8888875432 11 1 11222344566789999999999988763211121 2233444556789999
Q ss_pred hhHHHHHHH-Hhh--cC-CC--CchHHHHHHHHhhhcCCHHHHHHHHHhcc-----C-CCC----eeeHHHHHHHHHhcC
Q 036340 347 HLGMQIHQM-VTK--TV-IP--DVPINNALITMYARCGAIVEARIIFEEMK-----L-LKN----VVSWNAMIGGCASHG 410 (579)
Q Consensus 347 ~~a~~~~~~-~~~--~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~-~~~----~~~~~~l~~~~~~~~ 410 (579)
+.|...+.. ... .. .+ .......+...+...|+++.|...+++.. . .++ ...+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999988776 221 11 11 12344566777888999999999887653 0 111 122344556677789
Q ss_pred ChHHHHHHHHHhHhCC--CCCC--hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchh-----HHHHHHhhccC
Q 036340 411 FATEALELFKSMRSFK--VLPT--YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF-----ASLVDIVGRHG 481 (579)
Q Consensus 411 ~~~~A~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g 481 (579)
++++|...+++..... ..+. ...+..+...+...|+++.|.+.++.+..-.........+ ......+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 9999999998876421 1122 2245556667788999999999988875421111111111 11123445689
Q ss_pred ChHHHHHHHHhCCCC--CCHH----HHHHHHHHHhhcCCHHHHHHHHHHHhhcCC------CCCCCchhhhhhhhhcCCc
Q 036340 482 RLEDAMDLIKGMPFE--PDKA----VWGALLGACRVHNNVELAQVAAEALMKVEP------ENSTPYVLLYNMYADVGRW 549 (579)
Q Consensus 482 ~~~~A~~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~ 549 (579)
+.+.|...+...... .... .+..+..++...|++++|...++++..... ....++..++.++...|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 999999998776311 1111 134566778889999999999999986421 1223567788899999999
Q ss_pred hHHHHHHHHHHhCC
Q 036340 550 DDANEVRLLMKSNN 563 (579)
Q Consensus 550 ~~A~~~~~~~~~~~ 563 (579)
++|...+.+..+..
T Consensus 748 ~~A~~~L~~Al~la 761 (903)
T PRK04841 748 SEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887544
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.77 E-value=6.7e-08 Score=77.22 Aligned_cols=109 Identities=12% Similarity=0.009 Sum_probs=89.7
Q ss_pred HHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcC
Q 036340 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVE 529 (579)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 529 (579)
.++++.+ .+.|+ .+..++..+...|++++|...|+.+ ...| +...|..++.++...|++++|+..|+++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455554 33454 3556788888999999999999887 4444 77788899999999999999999999999999
Q ss_pred CCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCC
Q 036340 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565 (579)
Q Consensus 530 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (579)
|+++.++..++.++...|++++|.+.+++..+....
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999998876543
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=8.2e-06 Score=88.18 Aligned_cols=356 Identities=11% Similarity=-0.021 Sum_probs=206.3
Q ss_pred HHHhcCChhhHHHHHccCCCCCcc--hHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHH
Q 036340 100 GFLQNGDVANAIEFFDRMPGRDSA--SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE 177 (579)
Q Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 177 (579)
.+...|++..|...+......... ........+...|+++.+...+..+... ....+..........+...|++++
T Consensus 350 ~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~--~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWE--VLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH--HHhcCcchHHHHHHHHHHCCCHHH
Confidence 344455555555555444332111 1122233455678888877777665321 111222233445556677899999
Q ss_pred HHHHHccccccCCCCCCCccCCc--chHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C--Ch----hHHHHHHHHHHhcC
Q 036340 178 ARKLFDKIPVNCDRGEGNVRFKR--NIVSWNSMIMCYAKAGDVVSAREIFEQMLE--R--DT----FSWNTMISGYIHVL 247 (579)
Q Consensus 178 A~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~--~~----~~~~~l~~~~~~~~ 247 (579)
+..++..+....... ..+-.+ .......+...+...|+++.|...+++... + +. ...+.+...+...|
T Consensus 428 a~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 428 VNTLLARAEQELKDR--NIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHhcccc--CcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 999888764221100 000011 122223344566789999999999988654 1 21 23455666777889
Q ss_pred ChHHHHHHhhcCC-------CCC--hhhHHHHHHHHHhcCCHHHHHHHHccCCC-------CC----hhhHHHHHHHHHh
Q 036340 248 DMEEASNLFVKMP-------HPD--TLTWNAMVSGYAQIGNLELALDFFKRMPQ-------KN----LVSWNSMIAGCET 307 (579)
Q Consensus 248 ~~~~a~~~~~~~~-------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~ 307 (579)
++++|...+++.. .+. ..+...+...+...|+++.|...+++... ++ ...+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 9999998888776 111 12445566778889999999888776543 11 1223445556677
Q ss_pred CCCchHHHHHHHHHHHcC--CCCC--hhhHHHHHHhccCCCchhhHHHHHHHHhh---cCCCCch--H--HHHHHHHhhh
Q 036340 308 NKDYEGAIKLFIQMQVEG--EKPD--RHTFSSILSMSSGIVDLHLGMQIHQMVTK---TVIPDVP--I--NNALITMYAR 376 (579)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~--~--~~~l~~~~~~ 376 (579)
.|++++|...+.+..... ..+. ...+..+.......|+.+.|...+..... ....... . ....+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 799999998888875431 1121 22333344566678888888877766211 1111110 0 0112233455
Q ss_pred cCCHHHHHHHHHhccCCCC-eee------HHHHHHHHHhcCChHHHHHHHHHhHhC----CCCCCh-hhHHHHHHHhccc
Q 036340 377 CGAIVEARIIFEEMKLLKN-VVS------WNAMIGGCASHGFATEALELFKSMRSF----KVLPTY-ITFISVLSACAHA 444 (579)
Q Consensus 377 ~~~~~~A~~~~~~~~~~~~-~~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~ 444 (579)
.|+.+.|..++.... .+. ... +..+..++...|++++|...+++.... |..+.. .+...+..++...
T Consensus 666 ~g~~~~A~~~l~~~~-~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 666 TGDKEAAANWLRQAP-KPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred CCCHHHHHHHHHhcC-CCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 778888888876654 111 111 235566677788888888888876543 222222 2555566677888
Q ss_pred CcHHHHHHHHHHhHHh
Q 036340 445 GLVEEGRQHFKSMVNE 460 (579)
Q Consensus 445 ~~~~~a~~~~~~~~~~ 460 (579)
|+.++|...+.+++..
T Consensus 745 G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 745 GRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888887654
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=3.7e-07 Score=87.31 Aligned_cols=196 Identities=16% Similarity=0.160 Sum_probs=124.1
Q ss_pred CCCCchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 036340 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439 (579)
Q Consensus 360 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 439 (579)
.+|-...-..+...+...|-...|..+|+++. .|.-++.+|...|+..+|..+..+..+ .+|++..|..+.+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 44555555666677777777777777777665 566666777777777777777766665 3566666666666
Q ss_pred HhcccCcHHHHHHHHHHhHHh-------------------------hCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC
Q 036340 440 ACAHAGLVEEGRQHFKSMVNE-------------------------YGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~-------------------------~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 493 (579)
.....--+++|.++.+....+ ..+.| -..+|..+.-+..+.++++.|.+.|...
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 554444444444444332211 02223 3455666666666777777777666655
Q ss_pred -CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 494 -PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 494 -~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
...| +...|+++..+|.+.|+..+|...+.++++-+-.+..+|.+...+..+.|.|++|.+.+.++.+..
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 4455 455777777777777777777777777777666666677777777777777777777777665444
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.74 E-value=0.00014 Score=67.77 Aligned_cols=429 Identities=12% Similarity=0.117 Sum_probs=224.6
Q ss_pred CCcchHHHHHHHHHccCCHHHHHHHhhcCC---CCchhhHHHHHHHHHhcCChhhHHHHHccCCC--CCcchHHHHHHHH
Q 036340 58 RDCVTWNTVISGYAKTGEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRMPG--RDSASLSALVSGL 132 (579)
Q Consensus 58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~ 132 (579)
-|+.+|+.|+.-+..+ .++++...++++. +..+..|...|..-.+.++++..+.+|.+... -+.+.|...+.--
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 3556677777766544 7777777777776 23445667777777777777777777777654 2445555444322
Q ss_pred Hh-CCCHH----HHHHHHHHhccCCCCCCCchhhHHHHHHHH---------hhCCCHHHHHHHHccccccCCCCCCCccC
Q 036340 133 IQ-NGELD----EAARVLVKCGSRCDGGEDLVRAYNTLIVGY---------GQRGRVEEARKLFDKIPVNCDRGEGNVRF 198 (579)
Q Consensus 133 ~~-~g~~~----~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 198 (579)
.+ .|+.. ...+.|+-.+........+...|+..+..+ ....+.+..+++|.++....-... ..+
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl--EkL 174 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL--EKL 174 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH--HHH
Confidence 21 22222 222333333333212223333444444332 223355667788888873210000 000
Q ss_pred CcchHHHHHHHHHH-------HhcCCHHHHHHHHHhcCC------CC---------------hhHHHHHHHHHHhcCCh-
Q 036340 199 KRNIVSWNSMIMCY-------AKAGDVVSAREIFEQMLE------RD---------------TFSWNTMISGYIHVLDM- 249 (579)
Q Consensus 199 ~~~~~~~~~l~~~~-------~~~~~~~~A~~~~~~~~~------~~---------------~~~~~~l~~~~~~~~~~- 249 (579)
-.|-..|..-++.. -+...+-.|.++++++.. .+ ...|-.+|..-...+--
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 01222222222211 123455667777766521 10 01133333322111100
Q ss_pred -------HHHHHHhhcCC-----CCChhh-----HHHHHHHHHhcCC-------HHHHHHHHccCCC----CChhhHHHH
Q 036340 250 -------EEASNLFVKMP-----HPDTLT-----WNAMVSGYAQIGN-------LELALDFFKRMPQ----KNLVSWNSM 301 (579)
Q Consensus 250 -------~~a~~~~~~~~-----~~~~~~-----~~~l~~~~~~~g~-------~~~A~~~~~~~~~----~~~~~~~~l 301 (579)
....-.++... .|+... .....+.+.+.|+ .+++..++++... .+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111111111 122110 0111223334444 4555556655543 233333333
Q ss_pred HHHHHhC---CCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH-HhhcCCC-CchHHHHHHHHhhh
Q 036340 302 IAGCETN---KDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIP-DVPINNALITMYAR 376 (579)
Q Consensus 302 ~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~-~~~~~~~l~~~~~~ 376 (579)
...--.. +..+....+++++...-..--..+|...+....+..-...|+.+|.. .+.+..+ ++.+..+++.-||.
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs 414 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS 414 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc
Confidence 3321111 23566677777776543333345666777777788888888999888 4444433 66777788877765
Q ss_pred cCCHHHHHHHHHhc-cCCCCeee-HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh--hHHHHHHHhcccCcHHHHHH
Q 036340 377 CGAIVEARIIFEEM-KLLKNVVS-WNAMIGGCASHGFATEALELFKSMRSFKVLPTYI--TFISVLSACAHAGLVEEGRQ 452 (579)
Q Consensus 377 ~~~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~ 452 (579)
++.+-|.++|+-- +.-+|... -...+.-+...++-..+..+|++....++.|+.. .|..++.--+.-|++..+.+
T Consensus 415 -kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 415 -KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred -CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 6788888888753 33344444 3456666777888888999999988877776654 88888888888899998888
Q ss_pred HHHHhHHhhC--CCCCcchhHHHHHHhhccCChHHHHHHH
Q 036340 453 HFKSMVNEYG--IEPRIEHFASLVDIVGRHGRLEDAMDLI 490 (579)
Q Consensus 453 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 490 (579)
+-+++...+. ..+....-..++..|.-.+....-..-+
T Consensus 494 lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~el 533 (656)
T KOG1914|consen 494 LEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDEL 533 (656)
T ss_pred HHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHH
Confidence 8777765433 2333333344555555555444333333
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.69 E-value=9.8e-07 Score=88.70 Aligned_cols=132 Identities=11% Similarity=0.074 Sum_probs=76.0
Q ss_pred CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHH
Q 036340 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFAS 472 (579)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 472 (579)
++..+..|.....+.|.+++|+.+++...+ +.|+.. ....++..+.+.+++++|...+++.+. ..| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 345555566666666666666666666663 355544 455555566666666666666666553 234 3444555
Q ss_pred HHHHhhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCC
Q 036340 473 LVDIVGRHGRLEDAMDLIKGMP-FEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531 (579)
Q Consensus 473 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 531 (579)
++.++.+.|++++|..+|+++- ..| +..++..+..++...|+.++|...|+++++...+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 5666666666666666666652 222 3455556666666666666666666666655544
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=8.4e-07 Score=84.94 Aligned_cols=224 Identities=12% Similarity=0.056 Sum_probs=174.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcC
Q 036340 299 NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCG 378 (579)
Q Consensus 299 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 378 (579)
..+...+.+.|-...|..+|+++. .+..++.+|...|+..+|..+...... .+|++..|..+++......
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence 346677888999999999998864 456677888889999999998887444 7889999999999888888
Q ss_pred CHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh-hhHHHHHHHhcccCcHHHHHHHHHHh
Q 036340 379 AIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY-ITFISVLSACAHAGLVEEGRQHFKSM 457 (579)
Q Consensus 379 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 457 (579)
-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+ +.|-. .+|..+..+..+.++++.|.+.|...
T Consensus 472 ~yEkawElsn~~sar----A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR----AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHHhhhhhHH----HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 899999998875411 112222233447999999999998774 45544 48888888888999999999999988
Q ss_pred HHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCC--C
Q 036340 458 VNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PF-EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE--N 532 (579)
Q Consensus 458 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~ 532 (579)
+ ...| +...|+.+..+|.+.|+..+|...+++. +. ..+...|.+.+-...+-|.+++|++.+.++..+... +
T Consensus 546 v---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 546 V---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred h---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence 7 4566 5789999999999999999999999988 32 335557888888888999999999999999865422 3
Q ss_pred CCCchhhhh
Q 036340 533 STPYVLLYN 541 (579)
Q Consensus 533 ~~~~~~l~~ 541 (579)
+.....++.
T Consensus 623 ~~vl~~iv~ 631 (777)
T KOG1128|consen 623 DEVLLIIVR 631 (777)
T ss_pred chhhHHHHH
Confidence 444444443
No 117
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.66 E-value=0.00039 Score=68.96 Aligned_cols=520 Identities=12% Similarity=0.085 Sum_probs=247.6
Q ss_pred hcCCCHHHHHHHhccCCCCchh-HHHHHHHHHHHcCCCCChHHHHHHHhhCC---CCCcchHHHHHHHHHccCCHHHHHH
Q 036340 6 VKRREMAKARKLFDEMPQRDVV-SWNVMISGYISSRGSGFLEEARYLFDIMP---ERDCVTWNTVISGYAKTGEMEEALR 81 (579)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 81 (579)
+..+++.+|+...++..+..|. .|...+.++...+. |+.++|..+++... ..|..|...+-.+|...|+.++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~-gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRL-GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHh-cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 4567788888888887763322 23344444433322 44888888877765 3466788888888888888888888
Q ss_pred HhhcCC--CCchhhHHHHHHHHHhcCChhh----HHHHHccCCCCCcchHHHHHHHHHhCC----------CHHHHHHHH
Q 036340 82 LFNSMP--ARNVVSWNAMISGFLQNGDVAN----AIEFFDRMPGRDSASLSALVSGLIQNG----------ELDEAARVL 145 (579)
Q Consensus 82 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~ 145 (579)
+|+++. .|+......+..+|.+.+++.+ |.++++..++ ++..+..++....+.- -..-|.+.+
T Consensus 99 ~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 888887 3555556666777777776554 5555554433 4444444444443211 123455666
Q ss_pred HHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHH
Q 036340 146 VKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIF 225 (579)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 225 (579)
+.+.+.. |.-.+..-...-...+-..|++++|.+++..-.. ..-..-+...-+.-+..+...+++.+..++-
T Consensus 178 ~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la-------~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 178 QKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLA-------EKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHH-------HhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 6666653 2222222222233344567778888887733210 1111233444445566677777777777777
Q ss_pred HhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHccCCC---CChh-hHHHH
Q 036340 226 EQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ---KNLV-SWNSM 301 (579)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-~~~~l 301 (579)
.+++..+..-|...+.. ..++++....+.... .+...+..+...+...+... +++. ++--+
T Consensus 250 ~~Ll~k~~Ddy~~~~~s---------v~klLe~~~~~~a~~------~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel 314 (932)
T KOG2053|consen 250 SRLLEKGNDDYKIYTDS---------VFKLLELLNKEPAEA------AHSLSKSLDECIEKAQKNIGSKSRGPYLARLEL 314 (932)
T ss_pred HHHHHhCCcchHHHHHH---------HHHHHHhcccccchh------hhhhhhhHHHHHHHHHHhhcccccCcHHHHHHH
Confidence 77665433223333222 111111111111111 11111222222222222221 2221 11111
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCc---h---HHHHHHHHhh
Q 036340 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV---P---INNALITMYA 375 (579)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~---~~~~l~~~~~ 375 (579)
..-+-.-|+.+++...|-+- -|.+| .+..=+..|...=+.++-..++........... . .+...+....
T Consensus 315 ~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~r 389 (932)
T KOG2053|consen 315 DKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLR 389 (932)
T ss_pred HHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHH
Confidence 12222346666655444321 12111 111111111111111222222222100000000 0 0111111111
Q ss_pred hcCC-----HHHHHHHHHhc----c--------CCCCee---------eHHHHHHHHHhcCChH---HHHHHHHHhHhCC
Q 036340 376 RCGA-----IVEARIIFEEM----K--------LLKNVV---------SWNAMIGGCASHGFAT---EALELFKSMRSFK 426 (579)
Q Consensus 376 ~~~~-----~~~A~~~~~~~----~--------~~~~~~---------~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~ 426 (579)
-.|. .+.-..++.+. . .-|+.. +.+.|+..+.+.++.. +|+-+++.-..
T Consensus 390 l~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt-- 467 (932)
T KOG2053|consen 390 LLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLT-- 467 (932)
T ss_pred HhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--
Confidence 1121 11112222111 1 112221 2456777788877755 45555554442
Q ss_pred CCCCh-hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCC--CCCC-HHHH
Q 036340 427 VLPTY-ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP--FEPD-KAVW 502 (579)
Q Consensus 427 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~ 502 (579)
..|.. .+-..+++.|.-.|-+..|.++|+.+--+ .+..|.--|. +...+...|++..+...+...- ...+ ..+-
T Consensus 468 ~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~ 545 (932)
T KOG2053|consen 468 KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETP 545 (932)
T ss_pred cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhH
Confidence 34433 36667788888889999999999887544 5666554443 3344566778877777766541 1111 1122
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhhcCCC----CCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 503 GALLGACRVHNNVELAQVAAEALMKVEPE----NSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 503 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
..+.. ..+.|.+.+..++..-=..+.-. -..+-..........++.++=...++.+.
T Consensus 546 eyI~~-AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 546 EYIAL-AYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHH-HHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 22333 34667776665554322222211 11223344455566677666666666654
No 118
>PLN02789 farnesyltranstransferase
Probab=98.65 E-value=4e-06 Score=76.39 Aligned_cols=191 Identities=12% Similarity=0.077 Sum_probs=126.8
Q ss_pred HHHHHHHHhhhcC-CHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCCh--HHHHHHHHHhHhCCCCCC-hhhHHHHHH
Q 036340 366 INNALITMYARCG-AIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFA--TEALELFKSMRSFKVLPT-YITFISVLS 439 (579)
Q Consensus 366 ~~~~l~~~~~~~~-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 439 (579)
+++....++...| .+++++..++++. .+.+..+|+.-...+.+.|+. ++++.+++++.+ ..|. ..+|.....
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w 150 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQW 150 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 3344444444455 4677887777664 233445566555555555553 677888888885 3454 447887777
Q ss_pred HhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhcc---CCh----HHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 036340 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRH---GRL----EDAMDLIKGM-PFEP-DKAVWGALLGACR 510 (579)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 510 (579)
++...|+++++++.++++++. . ..+...|+....++.+. |.. ++++.+..++ ...| |...|+.+...+.
T Consensus 151 ~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~ 228 (320)
T PLN02789 151 VLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFK 228 (320)
T ss_pred HHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Confidence 888888899999999888864 1 22556666665555443 222 3566666444 4455 6678888777776
Q ss_pred hc----CCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcC------------------CchHHHHHHHHHH
Q 036340 511 VH----NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG------------------RWDDANEVRLLMK 560 (579)
Q Consensus 511 ~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 560 (579)
.. +...+|..++.++.+.+|.++.++..|+.+|.... ..++|.++++.+.
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 229 DDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 63 34567888889988889999888999999998643 2367888888773
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.65 E-value=1.2e-06 Score=73.59 Aligned_cols=136 Identities=15% Similarity=0.094 Sum_probs=114.0
Q ss_pred CCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC--CCCCCHHHHHH
Q 036340 427 VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM--PFEPDKAVWGA 504 (579)
Q Consensus 427 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~ 504 (579)
..|+......+...+...|+-+....+...... ..+.+......++....+.|++.+|...+.+. ..++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 456544336666778888888888888776543 22335566667899999999999999999998 45668999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 505 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
+..+|.+.|++++|...|.+++++.|+++.+...|+..|.-.|+++.|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999998865554
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.64 E-value=2.1e-06 Score=76.03 Aligned_cols=183 Identities=15% Similarity=0.059 Sum_probs=127.9
Q ss_pred CChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCc---hHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCC-ee---eH
Q 036340 328 PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDV---PINNALITMYARCGAIVEARIIFEEMK-LLKN-VV---SW 399 (579)
Q Consensus 328 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~---~~ 399 (579)
.....+......+...|+++.|...++......+.++ ..+..++.++...|++++|...++++. ..|+ .. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455667777788899999999999998655555544 467888999999999999999999884 3343 22 35
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchh
Q 036340 400 NAMIGGCASH--------GFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470 (579)
Q Consensus 400 ~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 470 (579)
..+..++... |+.++|++.++++... .|+.. ....+... +... ... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~------~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLR------NRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHH------HHH-H--------HHH
Confidence 5666666654 7789999999999864 56543 32222111 0000 000 0 011
Q ss_pred HHHHHHhhccCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCC
Q 036340 471 ASLVDIVGRHGRLEDAMDLIKGM----PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531 (579)
Q Consensus 471 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 531 (579)
..++..+.+.|++++|+..+++. +..| ....+..++.++...|++++|...++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35667788899999999988877 2223 3567888889999999999999988888766653
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.63 E-value=2e-06 Score=72.76 Aligned_cols=152 Identities=8% Similarity=0.073 Sum_probs=114.2
Q ss_pred HHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHH
Q 036340 370 LITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449 (579)
Q Consensus 370 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 449 (579)
-+..|...|+++......+.+. .|. . .+...++.++++..+++..+.. +.+...|..+...|...|++++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~-~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA-DPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh-Ccc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3456777888877655554432 121 0 1223566788888888887542 3345588889999999999999
Q ss_pred HHHHHHHhHHhhCCCC-CcchhHHHHHHh-hccCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHH
Q 036340 450 GRQHFKSMVNEYGIEP-RIEHFASLVDIV-GRHGR--LEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAE 523 (579)
Q Consensus 450 a~~~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 523 (579)
|...|++..+ +.| +...+..++.++ ...|+ .++|.+++++. ...| +...+..+...+.+.|++++|+..|+
T Consensus 92 A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998874 355 677888888864 67777 58999999988 4455 67788888899999999999999999
Q ss_pred HHhhcCCCCCC
Q 036340 524 ALMKVEPENST 534 (579)
Q Consensus 524 ~~~~~~p~~~~ 534 (579)
++++..|.+..
T Consensus 169 ~aL~l~~~~~~ 179 (198)
T PRK10370 169 KVLDLNSPRVN 179 (198)
T ss_pred HHHhhCCCCcc
Confidence 99999988765
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.62 E-value=1.9e-07 Score=72.85 Aligned_cols=98 Identities=9% Similarity=0.008 Sum_probs=85.6
Q ss_pred CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhh
Q 036340 466 RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 543 (579)
+.+....++..+...|++++|.++|+-+ ...| +...|..|..++...|++++|+..|.++..++|+++.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4455567777788999999999999987 4455 6778899999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhCC
Q 036340 544 ADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~~ 563 (579)
...|+.+.|.+-|+..+..-
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999876543
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=3.7e-07 Score=72.87 Aligned_cols=92 Identities=20% Similarity=0.328 Sum_probs=44.1
Q ss_pred HHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCC
Q 036340 471 ASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548 (579)
Q Consensus 471 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 548 (579)
..++..+...|++++|...++.+ ...| +...+..+...+...|++++|...++++++..|+++..+..++.+|...|+
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 33444444444444444444443 1122 334444444444455555555555555555555555555555555555555
Q ss_pred chHHHHHHHHHHhC
Q 036340 549 WDDANEVRLLMKSN 562 (579)
Q Consensus 549 ~~~A~~~~~~~~~~ 562 (579)
+++|...+++..+.
T Consensus 101 ~~~A~~~~~~al~~ 114 (135)
T TIGR02552 101 PESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555544443
No 124
>PLN02789 farnesyltranstransferase
Probab=98.57 E-value=1.8e-06 Score=78.66 Aligned_cols=190 Identities=12% Similarity=0.110 Sum_probs=141.1
Q ss_pred HHHHhhhcCCHHHHHHHHHhcc-CCC-CeeeHHHHHHHHHhcC-ChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccC
Q 036340 370 LITMYARCGAIVEARIIFEEMK-LLK-NVVSWNAMIGGCASHG-FATEALELFKSMRSFKVLPTYI-TFISVLSACAHAG 445 (579)
Q Consensus 370 l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~ 445 (579)
+-..+...+..++|+.+..++. ..| +..+|+.-..++...| ++++++..++++.+. .|+.. +|..-...+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence 3344556778899999998875 334 4456776666777777 579999999999864 45443 6665555555556
Q ss_pred c--HHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---CC---
Q 036340 446 L--VEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVH---NN--- 514 (579)
Q Consensus 446 ~--~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---~~--- 514 (579)
. .+++..+++++++. .| +..+|.....++...|+++++++.+.++ ...| +...|+....++.+. |.
T Consensus 121 ~~~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 121 PDAANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred chhhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccc
Confidence 5 36788888888743 45 7788998999999999999999999998 3334 677888777666544 22
Q ss_pred -HHHHHHHHHHHhhcCCCCCCCchhhhhhhhhc----CCchHHHHHHHHHHhCCC
Q 036340 515 -VELAQVAAEALMKVEPENSTPYVLLYNMYADV----GRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 515 -~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~ 564 (579)
.++++....+++..+|+|..+|..+..++... ++..+|.+...+..+.++
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 35678888899999999999999999999883 455678888887766443
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=1.5e-05 Score=67.07 Aligned_cols=135 Identities=17% Similarity=0.251 Sum_probs=84.3
Q ss_pred HHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhh----CCC
Q 036340 99 SGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ----RGR 174 (579)
Q Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 174 (579)
..|.+.|++++|++.... ..+......-+..+.+..+++-|.+.+++|.+. .+..+.+.|..++.+ .++
T Consensus 116 ~i~~~~~~~deAl~~~~~--~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-----ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHL--GENLEAAALNVQILLKMHRFDLAEKELKKMQQI-----DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHhhcCCChHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHhccchh
Confidence 456777778877777766 233333444455666777777777777777662 223344445544443 446
Q ss_pred HHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCCh
Q 036340 175 VEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER---DTFSWNTMISGYIHVLDM 249 (579)
Q Consensus 175 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 249 (579)
...|.-+|+++. ...+|++.+.+..+.++...|++++|..+++..+.+ ++.+...++-+-...|..
T Consensus 189 ~qdAfyifeE~s---------~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 189 IQDAFYIFEELS---------EKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhHHHHHHHHh---------cccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 777777777775 235777777777777777778888888877777664 344444444444444433
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=1.1e-05 Score=82.21 Aligned_cols=240 Identities=10% Similarity=0.046 Sum_probs=137.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHccCCC--CC-hhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036340 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ--KN-LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338 (579)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 338 (579)
.+...+..|+..+...+++++|.++.+...+ |+ ...|..+...+.+.++.+.+..+ .+. .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------------~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---------------D 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------h
Confidence 3445566666666667777777777665443 22 22344444455555554444433 221 1
Q ss_pred hccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHH
Q 036340 339 MSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEAL 416 (579)
Q Consensus 339 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 416 (579)
......++.....+... ......+..++..++.+|-+.|+.++|..+++++. .+.|+.+.|.+...|... +.++|+
T Consensus 92 ~~~~~~~~~~ve~~~~~-i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 92 SFSQNLKWAIVEHICDK-ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred hcccccchhHHHHHHHH-HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 11112222111111111 11133334455667777777777777777777764 334566677777777777 777777
Q ss_pred HHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCC
Q 036340 417 ELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFE 496 (579)
Q Consensus 417 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 496 (579)
+++.+.... +...+++..+.++|.+++.. .+.+...+..+.+.....- +..
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~------------~~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHR------------EFT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhh------------ccc
Confidence 777776642 44556777777777777642 2223333333332222211 112
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchH
Q 036340 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551 (579)
Q Consensus 497 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 551 (579)
--..++..+...|...+++++++.+++.+++.+|.|..+...++..|. ++|.+
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 233455555666778889999999999999999999988888888887 44444
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=1.6e-05 Score=73.08 Aligned_cols=138 Identities=18% Similarity=0.160 Sum_probs=100.6
Q ss_pred HHHHhcCChHHHHHHHHHhHhCCCCCChhhHH-HHHHHhcccCcHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHhhccC
Q 036340 404 GGCASHGFATEALELFKSMRSFKVLPTYITFI-SVLSACAHAGLVEEGRQHFKSMVNEYGIEPR-IEHFASLVDIVGRHG 481 (579)
Q Consensus 404 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 481 (579)
-.+...|++++|+..++.+... .|+...|. .....+...|+.++|.+.+++++. ..|+ ......++.+|.+.|
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcC
Confidence 3455678888888888888853 56665444 444578888888888888888874 3565 555667888888888
Q ss_pred ChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHH
Q 036340 482 RLEDAMDLIKGM--PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559 (579)
Q Consensus 482 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (579)
++.+|+.+++.. ..+.|+..|..+..+|...|+..++... .+..|.-.|+|++|...+...
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHH
Confidence 888888888877 3344778888888888888887776544 345666777788888777777
Q ss_pred HhCC
Q 036340 560 KSNN 563 (579)
Q Consensus 560 ~~~~ 563 (579)
++..
T Consensus 452 ~~~~ 455 (484)
T COG4783 452 SQQV 455 (484)
T ss_pred HHhc
Confidence 6554
No 128
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.50 E-value=1.5e-05 Score=82.02 Aligned_cols=216 Identities=15% Similarity=0.146 Sum_probs=164.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHhhcCC-C-------CChhhHHHHHHHHHhcCCHHHHHHHHccCCC-CC-hhhHHHH
Q 036340 232 DTFSWNTMISGYIHVLDMEEASNLFVKMP-H-------PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ-KN-LVSWNSM 301 (579)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~l 301 (579)
+...|-..+......++.++|.++.++++ . .-.-.|.++++.-..-|.-+...++|+++.+ -| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34567777888888888888888888877 1 1234677777777777888888889988877 33 3468888
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCC--CchHHHHHHHHhhhcCC
Q 036340 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIP--DVPINNALITMYARCGA 379 (579)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 379 (579)
...|.+.+.+++|.++|+.|.+.- .-....|...+..+.+..+-+.|..++.......|. ........+.+-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 899999999999999999998742 246667888888888888888888888885555544 56667778888889999
Q ss_pred HHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh--hHHHHHHHhcccCcHH
Q 036340 380 IVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI--TFISVLSACAHAGLVE 448 (579)
Q Consensus 380 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~ 448 (579)
.+.+..+|+... .+.....|+..+..-.++|+.+.+..+|++....++.|-.. .|...+..--..|+-.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 999999999875 33456789999999999999999999999999888887544 4555554333334433
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=3.8e-05 Score=64.77 Aligned_cols=86 Identities=12% Similarity=0.149 Sum_probs=45.7
Q ss_pred HhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHh----cCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHH
Q 036340 373 MYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS----HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448 (579)
Q Consensus 373 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 448 (579)
.+.+..+.+-|.+.++.|..-.+..+.+-|..++.+ .+....|.-+|++|.+ ...|+..+.+..+.++...|+++
T Consensus 146 I~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHH
Confidence 344445555666666655533333444445554443 2345556666666653 24555555555555555666666
Q ss_pred HHHHHHHHhHH
Q 036340 449 EGRQHFKSMVN 459 (579)
Q Consensus 449 ~a~~~~~~~~~ 459 (579)
+|..+++..+.
T Consensus 225 eAe~lL~eaL~ 235 (299)
T KOG3081|consen 225 EAESLLEEALD 235 (299)
T ss_pred HHHHHHHHHHh
Confidence 66666655554
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=4.7e-06 Score=69.47 Aligned_cols=196 Identities=14% Similarity=0.134 Sum_probs=122.6
Q ss_pred CCchhhHHHHHHH----Hhhc-CCCCch-HHHHHHHHhhhcCCHHHHHHHHHhcc-CCCCeeeHHHH-HHHHHhcCChHH
Q 036340 343 IVDLHLGMQIHQM----VTKT-VIPDVP-INNALITMYARCGAIVEARIIFEEMK-LLKNVVSWNAM-IGGCASHGFATE 414 (579)
Q Consensus 343 ~~~~~~a~~~~~~----~~~~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~ 414 (579)
..+.++..+++.. ...+ ..++.. ++..++-+....|+.+.|...++++. .-|...-...| ..-+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 4456666666554 2233 344433 44556666667788888888887764 11332222222 222334677888
Q ss_pred HHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-
Q 036340 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM- 493 (579)
Q Consensus 415 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 493 (579)
|+++++.+.+.. +.|.+++..=+...-..|+.-+|++-+....+. +..|.+.|..+.+.|...|++++|.-.++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 888888887653 334446655555555667777777777777663 4567788888888888888888888888877
Q ss_pred CCCC-CHHHHHHHHHHHhhcC---CHHHHHHHHHHHhhcCCCCCCCchhhhh
Q 036340 494 PFEP-DKAVWGALLGACRVHN---NVELAQVAAEALMKVEPENSTPYVLLYN 541 (579)
Q Consensus 494 ~~~~-~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 541 (579)
-..| ++..+..+...+.-.| +.+-|.+.|+++++++|.+...+..+..
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 2334 5666666666644333 5677788888888888866555554433
No 131
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.49 E-value=0.00079 Score=62.97 Aligned_cols=147 Identities=12% Similarity=0.117 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcc----CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHHhcccCcHHHHHHHH
Q 036340 380 IVEARIIFEEMK----LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP-TYITFISVLSACAHAGLVEEGRQHF 454 (579)
Q Consensus 380 ~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 454 (579)
.+.....++++. ..| ..+|..++..-.+..-.+.|..+|.+..+.+..+ ....+++++..++ .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 444445555543 222 3467788888888888999999999999988888 5557777777655 47889999999
Q ss_pred HHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcC
Q 036340 455 KSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP---FEP--DKAVWGALLGACRVHNNVELAQVAAEALMKVE 529 (579)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 529 (579)
+.-+++++ .++......+.-+...++-..|..+|++.- ..| ....|..++.--..-|+...+.++-++.....
T Consensus 425 eLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 425 ELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 98887643 344555677788889999999999999882 233 35689999988889999999999988887766
Q ss_pred C
Q 036340 530 P 530 (579)
Q Consensus 530 p 530 (579)
|
T Consensus 503 ~ 503 (656)
T KOG1914|consen 503 P 503 (656)
T ss_pred c
Confidence 6
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.47 E-value=1.4e-06 Score=80.74 Aligned_cols=122 Identities=14% Similarity=0.140 Sum_probs=97.9
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 036340 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRV 511 (579)
Q Consensus 434 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 511 (579)
...|+..+...++++.|.++++++.+. .|+ ....++.++...++..+|.+++.+. ...| +...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344556666778888888888888654 343 4556778888888888888888776 3233 66677777788889
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 512 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
.++++.|+.+.+++.+..|++..+|..|+.+|...|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888664
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=1.3e-05 Score=66.93 Aligned_cols=182 Identities=13% Similarity=0.120 Sum_probs=113.1
Q ss_pred CCCchHHHHHHHHHHH---cC-CCCChhh-HHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHH
Q 036340 308 NKDYEGAIKLFIQMQV---EG-EKPDRHT-FSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVE 382 (579)
Q Consensus 308 ~~~~~~a~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 382 (579)
..+.++.++++.++.. .| ..++..+ |..++-+....+..+.|...++.....+|.+..+-..-+..+...|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 3456777777777653 23 3344433 33444455667777777777777666665555555555555666677777
Q ss_pred HHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 036340 383 ARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460 (579)
Q Consensus 383 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 460 (579)
|.++++.+. .+.|..++-.-+......|+.-+|++-+....+ .+..|...|..+...|...|++++|.-++++++
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l-- 181 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL-- 181 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH--
Confidence 777777764 233455566556666666776777777776665 245566677777777777777777777777776
Q ss_pred hCCCC-CcchhHHHHHHhhccC---ChHHHHHHHHhC
Q 036340 461 YGIEP-RIEHFASLVDIVGRHG---RLEDAMDLIKGM 493 (579)
Q Consensus 461 ~~~~~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~ 493 (579)
-+.| ++..+..+++.+.-.| +.+-|.+++.+.
T Consensus 182 -l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 182 -LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred -HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3345 4455566666655444 444566666655
No 134
>PF12854 PPR_1: PPR repeat
Probab=98.43 E-value=4.6e-07 Score=51.02 Aligned_cols=33 Identities=36% Similarity=0.607 Sum_probs=30.5
Q ss_pred cCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036340 197 RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229 (579)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 229 (579)
|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 789999999999999999999999999999873
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.40 E-value=5.2e-05 Score=77.40 Aligned_cols=232 Identities=14% Similarity=0.144 Sum_probs=139.4
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCc
Q 036340 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200 (579)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 200 (579)
+...+..|+..+...+++++|.++.+...+ ..|.....|..++..+.+.++...+.-+ .+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l-------------- 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK---EHKKSISALYISGILSLSRRPLNDSNLL--NLI-------------- 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhhcchhhhhhh--hhh--------------
Confidence 445666777777777777777777776666 4555566666666667666665555444 222
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHHH
Q 036340 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLE--RDTFSWNTMISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGYA 275 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 275 (579)
.......++.....++..+.+ .+..++..++.+|-+.|+.++|...++++. +.|+.+.+.+...|+
T Consensus 91 ---------~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 91 ---------DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred ---------hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 222222222222222222222 133456666777777777777777777776 466788888898888
Q ss_pred hcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH
Q 036340 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM 355 (579)
Q Consensus 276 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 355 (579)
.. ++++|..++.+. +..+...+++..+.++|.++....+. +...|..+.....+.
T Consensus 162 e~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~------------ 216 (906)
T PRK14720 162 EE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGH------------ 216 (906)
T ss_pred Hh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhh------------
Confidence 88 999999887754 33367777899999999998875322 222222222211111
Q ss_pred HhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHH
Q 036340 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCA 407 (579)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 407 (579)
.+..--..++..+-..|...++++++..+++.+. .+.|.....-++.+|.
T Consensus 217 --~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 --REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred --hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1222233444556667777778888888887764 2334455555666655
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=3.9e-05 Score=70.62 Aligned_cols=108 Identities=17% Similarity=0.140 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-hhHHHHHHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHHH
Q 036340 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLER--D-TFSWNTMISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGYA 275 (579)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 275 (579)
+..+......+.+.|+.++|.+.+++++.. + ...+..+..++.+.|++.+|+.+++... +.|+..|..|..+|.
T Consensus 340 ~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~ 419 (484)
T COG4783 340 PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYA 419 (484)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 333333444444444444444444444332 1 2233344444444455544444444443 344555555556665
Q ss_pred hcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHH
Q 036340 276 QIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323 (579)
Q Consensus 276 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (579)
..|+..++..-. ...|...|+++.|+..+....+
T Consensus 420 ~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 420 ELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHHHH
Confidence 555555444322 2334455555655555555544
No 137
>PF12854 PPR_1: PPR repeat
Probab=98.38 E-value=4.9e-07 Score=50.91 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=21.2
Q ss_pred CCCCChhhHHHHHHHhcccCcHHHHHHHHHHh
Q 036340 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457 (579)
Q Consensus 426 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 457 (579)
|+.||..||+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666655
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.37 E-value=5.1e-06 Score=66.26 Aligned_cols=113 Identities=13% Similarity=0.088 Sum_probs=86.4
Q ss_pred HHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CC
Q 036340 418 LFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PF 495 (579)
Q Consensus 418 ~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 495 (579)
.+++..+ ..|+.. ....+...+...|++++|.+.++.+... .+.+...+..++.++...|++++|...++.. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555553 455443 5666667788889999999998888653 2336677888888888899999999888877 33
Q ss_pred CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC
Q 036340 496 EP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534 (579)
Q Consensus 496 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 534 (579)
.| +...+..+...+...|++++|...++++++..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 6677888888888999999999999999999998765
No 139
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=3.9e-05 Score=77.42 Aligned_cols=147 Identities=9% Similarity=0.031 Sum_probs=116.6
Q ss_pred HhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCC-eeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh-
Q 036340 356 VTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLKN-VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI- 432 (579)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~- 432 (579)
.....+.++..+..|.....+.|.+++|+.+++... ..|+ ......++..+.+.+++++|+..+++.... .|+..
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~ 155 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAR 155 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHH
Confidence 455677778889999999999999999999999875 4454 556777888899999999999999999864 56655
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM--PFEPDKAVWGALL 506 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~ 506 (579)
....+..++.+.|++++|..+|+++... .+.+...+..++.++...|+.++|...|++. ...|....|+.++
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 6677777889999999999999999852 2334778888999999999999999999887 3345555555544
No 140
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3.1e-06 Score=73.20 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=94.8
Q ss_pred CCCcchhHHHHHHhhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHh-hc--CCHHHHHHHHHHHhhcCCCCCCCchh
Q 036340 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFE-PDKAVWGALLGACR-VH--NNVELAQVAAEALMKVEPENSTPYVL 538 (579)
Q Consensus 464 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~-~~--~~~~~A~~~~~~~~~~~p~~~~~~~~ 538 (579)
+-|.+.|..|+.+|...|+++.|..-|.+. ... +++..+..+..++. .. .+..++..+++++++.+|.|+.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 338899999999999999999999999887 343 46777777776643 22 35688999999999999999999999
Q ss_pred hhhhhhhcCCchHHHHHHHHHHhCCCCCCCcceeeE
Q 036340 539 LYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSWVD 574 (579)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 574 (579)
|+..+..+|++.+|...|+.|.+...+..|+-+.|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 999999999999999999999999988888766554
No 141
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.28 E-value=0.0033 Score=57.77 Aligned_cols=139 Identities=13% Similarity=0.169 Sum_probs=75.7
Q ss_pred HccCCHHHHHHHhhcCCC---Cchh------hHHHHHHHHHhcCChhhHHHHHccCCCC-CcchHHHHHHHH--HhCCCH
Q 036340 71 AKTGEMEEALRLFNSMPA---RNVV------SWNAMISGFLQNGDVANAIEFFDRMPGR-DSASLSALVSGL--IQNGEL 138 (579)
Q Consensus 71 ~~~g~~~~A~~~~~~~~~---~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~--~~~g~~ 138 (579)
.+++++.+|..+|.++.+ .++. .-+.++++|... +.+.....+....+. ....|..+..++ .+.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 456777777777777652 2211 123445555443 334333333333221 133444444443 367778
Q ss_pred HHHHHHHHHhccCCCCCC-C-----------chhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHH
Q 036340 139 DEAARVLVKCGSRCDGGE-D-----------LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206 (579)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~-~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (579)
..|.+.+........+.. + +...=+..+.++...|++.+++.+++++...-- .....-+..+|+
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll----krE~~w~~d~yd 171 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL----KRECEWNSDMYD 171 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh----hhhhcccHHHHH
Confidence 888877766554311111 1 111224567788899999999999998862110 112235778888
Q ss_pred HHHHHHHh
Q 036340 207 SMIMCYAK 214 (579)
Q Consensus 207 ~l~~~~~~ 214 (579)
.++-.+.+
T Consensus 172 ~~vlmlsr 179 (549)
T PF07079_consen 172 RAVLMLSR 179 (549)
T ss_pred HHHHHHhH
Confidence 76655544
No 142
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.27 E-value=0.0038 Score=60.40 Aligned_cols=221 Identities=14% Similarity=0.111 Sum_probs=129.7
Q ss_pred hHHHHHHHhhCCCCCcchHHHHHHHHHccCCHHHHHHHhhcCCC-CchhhHHHHH----------HHHHhcCChhhHHHH
Q 036340 45 LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPA-RNVVSWNAMI----------SGFLQNGDVANAIEF 113 (579)
Q Consensus 45 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~----------~~~~~~~~~~~A~~~ 113 (579)
+++|.++.+.. |.+..|..+.......-.++.|+..|-+..+ +....--.|- ..-.--|.+++|.++
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 56666665544 3345566666555555555555555554431 1111101111 111224777778777
Q ss_pred HccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCC
Q 036340 114 FDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE 193 (579)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 193 (579)
+-++.++|.. +....+.|++-...++++.--... ....-..+++.++..+.....|++|.++|..-.
T Consensus 757 yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~d~-dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~------- 823 (1189)
T KOG2041|consen 757 YLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGSDD-DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG------- 823 (1189)
T ss_pred hhccchhhhh-----HHHHHhhhhHHHHHHHHHccCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 7777665532 445566777777777766522210 112223578888888888888888888887654
Q ss_pred CCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHH
Q 036340 194 GNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSG 273 (579)
Q Consensus 194 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 273 (579)
-....+.++.+..++++-+.+...+.+ +....-.+...+.+.|.-++|.+.|-+...|.. .+..
T Consensus 824 ----------~~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~t 887 (1189)
T KOG2041|consen 824 ----------DTENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHT 887 (1189)
T ss_pred ----------chHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHH
Confidence 122456677777777766666655544 334455667777777888888777766554432 3456
Q ss_pred HHhcCCHHHHHHHHccCCCCChh
Q 036340 274 YAQIGNLELALDFFKRMPQKNLV 296 (579)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~~~~~ 296 (579)
|...++|.+|.++-++..-|.+.
T Consensus 888 Cv~LnQW~~avelaq~~~l~qv~ 910 (1189)
T KOG2041|consen 888 CVELNQWGEAVELAQRFQLPQVQ 910 (1189)
T ss_pred HHHHHHHHHHHHHHHhccchhHH
Confidence 66777888888777766554443
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=3.1e-05 Score=62.24 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcc--hHHHHHHHHHH
Q 036340 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN--IVSWNSMIMCY 212 (579)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 212 (579)
.++...+...++.+.+..++.+....+...+...+...|++++|...|+.+. ...-.|+ ......+..++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~--------~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKAL--------ANAPDPELKPLARLRLARIL 95 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------hhCCCHHHHHHHHHHHHHHH
Confidence 5555555555555555432222223344445555556666666666666655 1111111 12333445555
Q ss_pred HhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCChHHHHHHhh
Q 036340 213 AKAGDVVSAREIFEQMLER--DTFSWNTMISGYIHVLDMEEASNLFV 257 (579)
Q Consensus 213 ~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (579)
...|++++|+..++....+ .+..+.....++.+.|++++|...|+
T Consensus 96 ~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 96 LQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5566666666665543222 12223333344444444444444443
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=4.7e-05 Score=61.22 Aligned_cols=115 Identities=14% Similarity=0.173 Sum_probs=70.5
Q ss_pred hcCChHHHHHHHHHhHhCCCCCCh----hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC--cchhHHHHHHhhccC
Q 036340 408 SHGFATEALELFKSMRSFKVLPTY----ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR--IEHFASLVDIVGRHG 481 (579)
Q Consensus 408 ~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 481 (579)
..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+... ...|. ......++.++...|
T Consensus 23 ~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~ 99 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQG 99 (145)
T ss_pred HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcC
Confidence 366677777777777754 2322 23333445667777777777777777654 22222 123445667777777
Q ss_pred ChHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 036340 482 RLEDAMDLIKGMPFEP-DKAVWGALLGACRVHNNVELAQVAAEAL 525 (579)
Q Consensus 482 ~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 525 (579)
++++|+..++.....+ .+..+...+.++...|++++|+..|+++
T Consensus 100 ~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 100 QYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777777776653222 3445555666677777777777777765
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.23 E-value=7.1e-06 Score=63.77 Aligned_cols=60 Identities=17% Similarity=0.034 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhhcCCCC---CCCchhhhhhhhhcCCchHHHHHHHHHHhC
Q 036340 503 GALLGACRVHNNVELAQVAAEALMKVEPEN---STPYVLLYNMYADVGRWDDANEVRLLMKSN 562 (579)
Q Consensus 503 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (579)
..++.++.+.|++++|...++++....|++ +.++..++.++.+.|++++|...++++.+.
T Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 43 YWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 334444444555555555555555444443 223444444555555555555555554443
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.21 E-value=1e-06 Score=60.40 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcC-CchHHHHHHHHHHhCC
Q 036340 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG-RWDDANEVRLLMKSNN 563 (579)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 563 (579)
+...|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|.+.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 46688888999999999999999999999999999999999999999999 7999999999887643
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=2.7e-05 Score=72.42 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=69.1
Q ss_pred HHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCH
Q 036340 96 AMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175 (579)
Q Consensus 96 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 175 (579)
.|+..+...++++.|+.+|+++.+.++.....+++.+...++-.+|++++.+.++ ..|.+......-+..+.+.+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~---~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK---ENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCH
Confidence 3444444556666666666666655555555566666556666666666666655 3444455555555556666666
Q ss_pred HHHHHHHccccccCCCCCCCccCCc-chHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036340 176 EEARKLFDKIPVNCDRGEGNVRFKR-NIVSWNSMIMCYAKAGDVVSAREIFEQM 228 (579)
Q Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (579)
+.|.++.+++. ...| +..+|..|+.+|...|+++.|+..++.+
T Consensus 251 ~lAL~iAk~av----------~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAV----------ELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHH----------HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66666666655 2233 3446666666666666666666665555
No 148
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=5.6e-06 Score=71.14 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=44.7
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHH
Q 036340 443 HAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQ 519 (579)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~ 519 (579)
+.++|.+|+..|.+++ .+.| |+..|..-+.+|.+.|.++.|++-++.. .+.| -..+|..|..+|...|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 3445555555555444 2333 3333444444555555555555444443 3333 2335555555555555555555
Q ss_pred HHHHHHhhcCCCCCCCchhh
Q 036340 520 VAAEALMKVEPENSTPYVLL 539 (579)
Q Consensus 520 ~~~~~~~~~~p~~~~~~~~l 539 (579)
+.|+++++++|++......|
T Consensus 170 ~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHhhhccCCCcHHHHHHH
Confidence 55555555555554433333
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.17 E-value=8.8e-06 Score=60.36 Aligned_cols=94 Identities=18% Similarity=0.276 Sum_probs=71.6
Q ss_pred hHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcC
Q 036340 470 FASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547 (579)
Q Consensus 470 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 547 (579)
+..++..+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777778888888887776 3333 44566777777778888888888888888888888877888888888888
Q ss_pred CchHHHHHHHHHHhCC
Q 036340 548 RWDDANEVRLLMKSNN 563 (579)
Q Consensus 548 ~~~~A~~~~~~~~~~~ 563 (579)
++++|...+++..+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 8888888888776543
No 150
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.15 E-value=0.0053 Score=55.23 Aligned_cols=273 Identities=16% Similarity=0.162 Sum_probs=180.5
Q ss_pred hcCCHHHHHHHHccCC---CCChhhHHHHHH--HHHhCCCchHHHHHHHHHHHcCCCCChh--hHHHHHHhccCCCchhh
Q 036340 276 QIGNLELALDFFKRMP---QKNLVSWNSMIA--GCETNKDYEGAIKLFIQMQVEGEKPDRH--TFSSILSMSSGIVDLHL 348 (579)
Q Consensus 276 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 348 (579)
-.|+-..|.+.-.+.. ..|....-.|+. +-.-.|+++.|.+-|+-|... |... -+..+.-...+.|+.+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 3466666666655433 244444444444 334568888888888888752 2211 12223333457788888
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc----CCCCeee--HHHHHHHHH---hcCChHHHHHHH
Q 036340 349 GMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK----LLKNVVS--WNAMIGGCA---SHGFATEALELF 419 (579)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~--~~~l~~~~~---~~~~~~~A~~~~ 419 (579)
|.++-+.....-+.-.......+...+..|+++.|+++.+.-. +.+++.- --.|+.+-. -.-+...|...-
T Consensus 173 Ar~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 173 ARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 8888777666666667788889999999999999999998653 3344322 122222211 133566677766
Q ss_pred HHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC----C
Q 036340 420 KSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM----P 494 (579)
Q Consensus 420 ~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 494 (579)
.+.. .+.|+.. .-..-..++++.|+..++-.+++.+-+. .|.+.+...+ .+.+.|+. +..-+++. .
T Consensus 253 ~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 253 LEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHh
Confidence 6665 4677766 4444556899999999999999988743 6666554332 33456654 33333333 3
Q ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhc-CCchHHHHHHHHHHh
Q 036340 495 FEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV-GRWDDANEVRLLMKS 561 (579)
Q Consensus 495 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 561 (579)
.+| +..+...+..+....|++..|..-.+.+....|... +|..|+.+-... |+-.++...+-+..+
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 455 556777778888899999999999999999999864 577888877655 999999888887543
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.14 E-value=1.9e-06 Score=58.18 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=46.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 505 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
++..+...|++++|+..|+++++..|+++.++..++.++...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34567778888888888888888888888888888888888888888888888876544
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.14 E-value=7.9e-07 Score=63.68 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=38.6
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHH
Q 036340 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK-AVWGALLGACRVHNNVELAQVAA 522 (579)
Q Consensus 444 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~ 522 (579)
.|+++.|+.+++++.......|+...+..++.++.+.|++++|..++++.+..|.. .....++.++.+.|++++|+.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45666666666666554221112333444555555666666665555553222222 23333344555555555555555
Q ss_pred HH
Q 036340 523 EA 524 (579)
Q Consensus 523 ~~ 524 (579)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.11 E-value=2.8e-05 Score=60.36 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=68.0
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPD----KAVWGALL 506 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~ 506 (579)
++..++..+...|++++|.+.++.++...+-.+ ....+..++.++.+.|++++|...++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445555666677777777777777765421111 1234556777777777777777777765 22222 44566777
Q ss_pred HHHhhcCCHHHHHHHHHHHhhcCCCCCCC
Q 036340 507 GACRVHNNVELAQVAAEALMKVEPENSTP 535 (579)
Q Consensus 507 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 535 (579)
.++...|+.++|...++++++..|+++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 77788888888888888888888887553
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.07 E-value=0.017 Score=57.98 Aligned_cols=179 Identities=15% Similarity=0.148 Sum_probs=82.4
Q ss_pred HhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHH
Q 036340 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212 (579)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 212 (579)
.+.|+.++|..+++.... ..+.|..+...+-.+|...|+.++|..+|+.+. +..|+......+..+|
T Consensus 54 ~r~gk~~ea~~~Le~~~~---~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~----------~~~P~eell~~lFmay 120 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYG---LKGTDDLTLQFLQNVYRDLGKLDEAVHLYERAN----------QKYPSEELLYHLFMAY 120 (932)
T ss_pred HHhcCchhHHHHHhhhcc---CCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHH----------hhCCcHHHHHHHHHHH
Confidence 355555555555554433 222244555555555666666666666666654 2244444555555555
Q ss_pred HhcCCHHH----HHHHHHhcCCCChhHHHHHHHHHHhc-CCh---------HHHHHHhhcCC-CC-Ch---hhHHHHHHH
Q 036340 213 AKAGDVVS----AREIFEQMLERDTFSWNTMISGYIHV-LDM---------EEASNLFVKMP-HP-DT---LTWNAMVSG 273 (579)
Q Consensus 213 ~~~~~~~~----A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~---------~~a~~~~~~~~-~~-~~---~~~~~l~~~ 273 (579)
.+.+++.+ |+++++...+ ++..+-.+++...+. ... .-|...++.+. .+ .. .-...-...
T Consensus 121 vR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 55554432 3333332222 233333333333221 111 11222333332 11 00 001111233
Q ss_pred HHhcCCHHHHHHHHccC-----CCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 036340 274 YAQIGNLELALDFFKRM-----PQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325 (579)
Q Consensus 274 ~~~~g~~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (579)
+...|++++|.+++..- ...+...-+.-+..+...++|.+..++..++...|
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 44566777777776321 11233333444556666677777777777766655
No 155
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=6.4e-06 Score=70.81 Aligned_cols=90 Identities=17% Similarity=0.206 Sum_probs=81.4
Q ss_pred HhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHH
Q 036340 476 IVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553 (579)
Q Consensus 476 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 553 (579)
-+.+.+++++|+..|.++ .+.| |.+.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|.
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 456789999999999887 6666 78888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 036340 554 EVRLLMKSNNIK 565 (579)
Q Consensus 554 ~~~~~~~~~~~~ 565 (579)
+.|++..+..+.
T Consensus 170 ~aykKaLeldP~ 181 (304)
T KOG0553|consen 170 EAYKKALELDPD 181 (304)
T ss_pred HHHHhhhccCCC
Confidence 999997766544
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.04 E-value=9.7e-06 Score=75.84 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=86.5
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC
Q 036340 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHN 513 (579)
Q Consensus 437 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~ 513 (579)
-...+...|+++.|+..|++++.. .| +...+..++.++...|++++|+..++++ ...| +...|..++.++...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 345677889999999999999853 44 5678888999999999999999999988 4455 6778888899999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCchhhhhh
Q 036340 514 NVELAQVAAEALMKVEPENSTPYVLLYNM 542 (579)
Q Consensus 514 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 542 (579)
++++|+..|+++++++|+++.+...+..+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999998766555444
No 157
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.00 E-value=0.00034 Score=55.67 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=65.8
Q ss_pred CCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC---CHHHHH
Q 036340 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP---DKAVWG 503 (579)
Q Consensus 428 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~ 503 (579)
.|+...-..|..++...|++.+|...|++...- -+-.|......++.+....+++.+|...++++ ...| .+.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 344444444555555556666666555555431 22234455555555555556666655555554 1111 222333
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHH
Q 036340 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558 (579)
Q Consensus 504 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 558 (579)
.+.+.+...|.+++|+..|+.++...|+ +......+..+.++|+.++|..-+..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 4445555566666666666666665555 33344445555566655555444433
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.98 E-value=1.3e-05 Score=57.41 Aligned_cols=80 Identities=14% Similarity=0.272 Sum_probs=40.6
Q ss_pred cCChHHHHHHHHHhHhCCCC-CChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHH
Q 036340 409 HGFATEALELFKSMRSFKVL-PTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDA 486 (579)
Q Consensus 409 ~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 486 (579)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...| +......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35566666666666643221 1223344455566666666666666655 1 1122 223334446666666666666
Q ss_pred HHHHHh
Q 036340 487 MDLIKG 492 (579)
Q Consensus 487 ~~~~~~ 492 (579)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
No 159
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.98 E-value=1.5e-05 Score=45.78 Aligned_cols=33 Identities=39% Similarity=0.597 Sum_probs=28.8
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036340 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPT 430 (579)
Q Consensus 398 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 430 (579)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00012 Score=65.92 Aligned_cols=152 Identities=11% Similarity=0.048 Sum_probs=86.5
Q ss_pred HHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHH--HhcccCcHHHHHHHHHHhHHhhCCCCCcch-------------
Q 036340 405 GCASHGFATEALELFKSMRSFKVLPTYITFISVLS--ACAHAGLVEEGRQHFKSMVNEYGIEPRIEH------------- 469 (579)
Q Consensus 405 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------- 469 (579)
++...|++++|..+-....+. .++. .+..+++ ++...++.+.+...|++.+ ...|+...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHH
Confidence 344566666666666555532 2221 2222222 3445566666766666655 33443211
Q ss_pred hHHHHHHhhccCChHHHHHHHHhC-CC-----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhh
Q 036340 470 FASLVDIVGRHGRLEDAMDLIKGM-PF-----EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543 (579)
Q Consensus 470 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 543 (579)
+..-+.-..+.|++.+|.+.+.+. .+ +|+...|.....+..+.|+.++|+.-.+.+++++|....++..-+.++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 111122344667777777776665 22 334445555555566677777777777777777777666677777777
Q ss_pred hhcCCchHHHHHHHHHHhC
Q 036340 544 ADVGRWDDANEVRLLMKSN 562 (579)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~ 562 (579)
...++|++|.+.+++..+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 7777777777777665443
No 161
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1.4e-05 Score=45.83 Aligned_cols=35 Identities=34% Similarity=0.540 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCh
Q 036340 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDR 330 (579)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 330 (579)
.+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 162
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.7e-05 Score=45.13 Aligned_cols=33 Identities=30% Similarity=0.664 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 036340 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328 (579)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (579)
.+|+.++.+|.+.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.94 E-value=3.4e-05 Score=64.24 Aligned_cols=94 Identities=12% Similarity=0.081 Sum_probs=52.8
Q ss_pred hHHHHHHhhccCChHHHHHHHHhC-CCCC---C-HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhh
Q 036340 470 FASLVDIVGRHGRLEDAMDLIKGM-PFEP---D-KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544 (579)
Q Consensus 470 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 544 (579)
+..++..+...|++++|...+++. ...| + ...+..++..+...|++++|+..++++++..|.++..+..++.++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444444555555555555555544 1111 1 2355555566666666666666666666666666666666666666
Q ss_pred hcCC--------------chHHHHHHHHHHhCC
Q 036340 545 DVGR--------------WDDANEVRLLMKSNN 563 (579)
Q Consensus 545 ~~g~--------------~~~A~~~~~~~~~~~ 563 (579)
..|+ +++|.+++++..+.+
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 6555 455666666655444
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.92 E-value=9.6e-05 Score=58.04 Aligned_cols=99 Identities=13% Similarity=0.062 Sum_probs=62.8
Q ss_pred CCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccC
Q 036340 119 GRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198 (579)
Q Consensus 119 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 198 (579)
+.+-.....+...+...|++++|..+|+.+.. -.|.+...|..|+-++...|++++|+..|..+. ...
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~--------~L~- 99 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA--------QIK- 99 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------hcC-
Confidence 33444455566666667777777777776665 445556666667777777777777777777665 222
Q ss_pred CcchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036340 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229 (579)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 229 (579)
+.|+..+..+..++...|+.+.|.+.|+..+
T Consensus 100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 100 IDAPQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456666666777777777777776666553
No 165
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.92 E-value=2.3e-05 Score=54.35 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=51.9
Q ss_pred HHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCC
Q 036340 507 GACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565 (579)
Q Consensus 507 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (579)
..+.+.+++++|+.++++++..+|+++..+..++.++...|++++|.+.+++..+.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45778899999999999999999999999999999999999999999999998876653
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.91 E-value=2.2e-05 Score=52.95 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=49.0
Q ss_pred HHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC
Q 036340 473 LVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533 (579)
Q Consensus 473 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 533 (579)
++..+...|++++|+..|+++ ...| +...+..+..++...|++++|+..|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778888888998888887 4445 566888888889999999999999999999999874
No 167
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=2.1e-05 Score=44.69 Aligned_cols=33 Identities=36% Similarity=0.634 Sum_probs=26.0
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC
Q 036340 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLP 429 (579)
Q Consensus 397 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 429 (579)
.+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467788888888888888888888888777776
No 168
>PRK15331 chaperone protein SicA; Provisional
Probab=97.90 E-value=8e-05 Score=58.75 Aligned_cols=91 Identities=11% Similarity=0.088 Sum_probs=73.5
Q ss_pred HHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCC
Q 036340 471 ASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548 (579)
Q Consensus 471 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 548 (579)
...+.-+...|++++|..+|+-+ -..| ++.-|..|..++...+++++|+..|..+..+.++||.+....+.+|...|+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 34445556788888888888876 2233 666777888888888999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHh
Q 036340 549 WDDANEVRLLMKS 561 (579)
Q Consensus 549 ~~~A~~~~~~~~~ 561 (579)
.+.|...|+...+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988887765
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.89 E-value=6.9e-05 Score=70.21 Aligned_cols=101 Identities=10% Similarity=0.104 Sum_probs=80.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhh
Q 036340 401 AMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVG 478 (579)
Q Consensus 401 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 478 (579)
.-...+...|++++|++.|+++++. .|+ ...|..+..+|...|++++|+..+++++. +.| +...|..++.++.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHH
Confidence 3455677889999999999999964 554 44788888899999999999999999985 355 5678889999999
Q ss_pred ccCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036340 479 RHGRLEDAMDLIKGM-PFEPDKAVWGALL 506 (579)
Q Consensus 479 ~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 506 (579)
..|++++|+..|++. ...|+.......+
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999987 5566544443333
No 170
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.002 Score=58.31 Aligned_cols=279 Identities=14% Similarity=0.063 Sum_probs=159.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCc-chHHHH
Q 036340 128 LVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR-NIVSWN 206 (579)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 206 (579)
....+.+..++..|+..+..+++ ..|.+...|..-+..+...|++++|.--.+.-. .+.| ....+.
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~---~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~----------r~kd~~~k~~~ 121 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAID---MCPDNASYYSNRAATLMMLGRFEEALGDARQSV----------RLKDGFSKGQL 121 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHH---hCccchhhhchhHHHHHHHHhHhhcccchhhhe----------ecCCCcccccc
Confidence 34456667778888888888887 455566677777777777777777765554433 1122 122344
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCC-----CCChhhHHHH-HHHHHhcCCH
Q 036340 207 SMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP-----HPDTLTWNAM-VSGYAQIGNL 280 (579)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l-~~~~~~~g~~ 280 (579)
...+++...++..+|.+.++ +...+ ....++..++... +|.-.++..+ ..++...|+.
T Consensus 122 r~~~c~~a~~~~i~A~~~~~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~ 185 (486)
T KOG0550|consen 122 REGQCHLALSDLIEAEEKLK-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY 185 (486)
T ss_pred chhhhhhhhHHHHHHHHHhh-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccc
Confidence 44555556666666665555 11111 1112222222222 2333444433 3566677888
Q ss_pred HHHHHHHccCCCCChh-hHHHHHH--HHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHh
Q 036340 281 ELALDFFKRMPQKNLV-SWNSMIA--GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357 (579)
Q Consensus 281 ~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 357 (579)
++|.+.--.+.+.|.. .+...++ ++--.++.+.+...|++.+.. .|+...-...-..+ +.+
T Consensus 186 ~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~----------k~l---- 249 (486)
T KOG0550|consen 186 DEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMP----------KKL---- 249 (486)
T ss_pred hhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhH----------HHH----
Confidence 8888776666654433 2222232 344567788888888887654 34433322211100 000
Q ss_pred hcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCC-----CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh
Q 036340 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLK-----NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431 (579)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 431 (579)
..+..-.+-..+.|++..|.+.|.+.. +.| +...|.....+..+.|+..+|+.--....+ +.|..
T Consensus 250 -------e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~sy 320 (486)
T KOG0550|consen 250 -------EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSY 320 (486)
T ss_pred -------HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHH
Confidence 011222344667788899988888764 333 333465666667788888888888777763 44443
Q ss_pred h-hHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 036340 432 I-TFISVLSACAHAGLVEEGRQHFKSMVNE 460 (579)
Q Consensus 432 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 460 (579)
. .|..-..++...++|++|.+-+++..+.
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 4444455777788899999988888754
No 171
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.89 E-value=0.02 Score=52.72 Aligned_cols=84 Identities=12% Similarity=0.202 Sum_probs=62.6
Q ss_pred HHHhhCC--CCCcchHHHHHHHHHccCCHHHHHHHhhcCCCCch---hhHHHHHHHHHhcCChhhHHHHHccCCCC--Cc
Q 036340 50 YLFDIMP--ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNV---VSWNAMISGFLQNGDVANAIEFFDRMPGR--DS 122 (579)
Q Consensus 50 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~ 122 (579)
.+=+++. +.|+.+|-.|+.-+...|.+++..++++++..|-+ .+|...+..=...+++.....+|.+.... +.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 4444554 45667899999999999999999999999987654 46777777777788999999999887653 45
Q ss_pred chHHHHHHHHH
Q 036340 123 ASLSALVSGLI 133 (579)
Q Consensus 123 ~~~~~l~~~~~ 133 (579)
..|...+.-..
T Consensus 110 dLW~lYl~YIR 120 (660)
T COG5107 110 DLWMLYLEYIR 120 (660)
T ss_pred hHHHHHHHHHH
Confidence 55555554333
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.88 E-value=0.0002 Score=59.63 Aligned_cols=127 Identities=13% Similarity=0.151 Sum_probs=81.5
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC--hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHH
Q 036340 397 VSWNAMIGGCASHGFATEALELFKSMRSFKVLPT--YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASL 473 (579)
Q Consensus 397 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 473 (579)
..+..+...+...|++++|+..|++..+....+. ...+..+...+...|++++|...+++.+.. .| +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHH
Confidence 3466677777778888888888888775433322 246667777778888888888888877643 34 34555566
Q ss_pred HHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcC
Q 036340 474 VDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547 (579)
Q Consensus 474 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 547 (579)
+.++...|+...+..-+... ...+++|...++++...+|++ +..++..+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 66676666655544322211 123677888888888888887 334444444444
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.87 E-value=4.4e-05 Score=63.35 Aligned_cols=92 Identities=8% Similarity=-0.131 Sum_probs=70.2
Q ss_pred cchhHHHHHHhhccCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhh
Q 036340 467 IEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP----DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541 (579)
Q Consensus 467 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 541 (579)
...+..++..+...|++++|+..+++. ...| ...++..+..++...|++++|+..+++++.+.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566777777788888888888776 2222 23478888888999999999999999999999998888888888
Q ss_pred hhh-------hcCCchHHHHHHHH
Q 036340 542 MYA-------DVGRWDDANEVRLL 558 (579)
Q Consensus 542 ~~~-------~~g~~~~A~~~~~~ 558 (579)
++. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 888 77787755555443
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.86 E-value=5.7e-06 Score=56.49 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=42.8
Q ss_pred hhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 510 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
.+.|++++|+..|+++++.+|+++.++..++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3567888888888888888888888888888888888888888888887765443
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.85 E-value=0.00023 Score=69.70 Aligned_cols=140 Identities=11% Similarity=0.049 Sum_probs=91.9
Q ss_pred CCCeeeHHHHHHHHHh--c---CChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhccc--------CcHHHHHHHHHHhH
Q 036340 393 LKNVVSWNAMIGGCAS--H---GFATEALELFKSMRSFKVLPTYI-TFISVLSACAHA--------GLVEEGRQHFKSMV 458 (579)
Q Consensus 393 ~~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 458 (579)
+.+...|...+++... . ++...|..+|++..+ ..|+.. .+..+..++... .+...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4566677777766433 2 236688899998885 467654 454443333221 12334444444332
Q ss_pred HhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC
Q 036340 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534 (579)
Q Consensus 459 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 534 (579)
.......++..+..++......|++++|...++++ ...|+...|..++..+...|+.++|...|+++..++|.+++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 21112234566777766677788888888888887 56677778888888888889999999999999888888775
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.81 E-value=0.024 Score=51.28 Aligned_cols=271 Identities=13% Similarity=0.095 Sum_probs=136.2
Q ss_pred cCCHHHHHHHhhcCC---CCchhhHHHHHHH--HHhcCChhhHHHHHccCCCC-Ccc--hHHHHHHHHHhCCCHHHHHHH
Q 036340 73 TGEMEEALRLFNSMP---ARNVVSWNAMISG--FLQNGDVANAIEFFDRMPGR-DSA--SLSALVSGLIQNGELDEAARV 144 (579)
Q Consensus 73 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~-~~~--~~~~l~~~~~~~g~~~~A~~~ 144 (579)
.||-..|.++-.+.. ..|......|+.+ -.-.|+++.|.+-|+.|... ... -...|.-.-.+.|..+.|...
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 355566655544432 3344444444432 23456666666666666542 111 122222233356666666666
Q ss_pred HHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHH--HHHHHH--H-HhcCCHH
Q 036340 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW--NSMIMC--Y-AKAGDVV 219 (579)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~--~-~~~~~~~ 219 (579)
-+..-. ..|.-..++...+...+..|+|+.|+++++.-.+. .-+.++..-- ..|+.+ . .-..+..
T Consensus 177 Ae~Aa~---~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~-------~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 177 AERAAE---KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA-------KVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred HHHHHh---hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH-------HhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 666554 33444455666666666777777777666654321 1223332211 111111 1 1123344
Q ss_pred HHHHHHHhcCC--CChh-HHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHH----HHHHccCCC
Q 036340 220 SAREIFEQMLE--RDTF-SWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA----LDFFKRMPQ 292 (579)
Q Consensus 220 ~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~ 292 (579)
.|...-.+..+ +|.. .-......+.+.|+..++-.+++.+-+..++--..++..+.+.|+.-.. .+-+..|..
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~ 326 (531)
T COG3898 247 SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKP 326 (531)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCc
Confidence 55555444433 3322 2233345666777777777777766522222222233344555552211 122344555
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhc-cCCCchhhHHHHHHH
Q 036340 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS-SGIVDLHLGMQIHQM 355 (579)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~ 355 (579)
.+..+...+..+-...|++..|..--+.... ..|....|..+...- ...|+-.++.+++..
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 6666666667777777777776665555443 356666666665543 355777777777766
No 177
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.81 E-value=0.041 Score=53.70 Aligned_cols=216 Identities=13% Similarity=0.129 Sum_probs=133.0
Q ss_pred CHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCC-CCcchHHHH----------HHHHHhCCCHHHHHH
Q 036340 75 EMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG-RDSASLSAL----------VSGLIQNGELDEAAR 143 (579)
Q Consensus 75 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l----------~~~~~~~g~~~~A~~ 143 (579)
..++|.+..+.- |.+..|..|.......-.++-|+..|-+... +.......+ +..-.--|++++|++
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 355666665544 7777888888777777777778777766543 222111111 112223578888888
Q ss_pred HHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHH
Q 036340 144 VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSARE 223 (579)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 223 (579)
++-.+-.+ ...+..+.+.|||-...++++.-.. ...-..-...++.+...+.....++.|.+
T Consensus 756 ~yld~drr-----------DLAielr~klgDwfrV~qL~r~g~~-------d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 756 LYLDADRR-----------DLAIELRKKLGDWFRVYQLIRNGGS-------DDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hhhccchh-----------hhhHHHHHhhhhHHHHHHHHHccCC-------CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776543 1345666777888888887766421 11111224567888888888888888888
Q ss_pred HHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHH
Q 036340 224 IFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303 (579)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 303 (579)
.|..--.. ...+.++.+..++++-..+.+.+ +.+....-.+.+++.+.|.-++|.+.|-+...|. .-+.
T Consensus 818 yY~~~~~~-----e~~~ecly~le~f~~LE~la~~L-pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~ 886 (1189)
T KOG2041|consen 818 YYSYCGDT-----ENQIECLYRLELFGELEVLARTL-PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVH 886 (1189)
T ss_pred HHHhccch-----HhHHHHHHHHHhhhhHHHHHHhc-CcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHH
Confidence 87764321 23455566655555555544444 4555666677788888888888877776655442 3345
Q ss_pred HHHhCCCchHHHHHHHHH
Q 036340 304 GCETNKDYEGAIKLFIQM 321 (579)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~ 321 (579)
.|...++|.+|.++-++.
T Consensus 887 tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 566677777777765543
No 178
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.79 E-value=0.03 Score=51.77 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=53.8
Q ss_pred HHHhCCCCC----CHHHHHHHHHH--HhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHH
Q 036340 489 LIKGMPFEP----DKAVWGALLGA--CRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559 (579)
Q Consensus 489 ~~~~~~~~~----~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (579)
++++.+..| +...-|.+..+ +..+|++.++.-.-.-+.+..| ++.++..+|.++....+|++|.+++..+
T Consensus 446 fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 446 FITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 344444444 33455556555 5688999999888888889999 6888999999999999999999999875
No 179
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.79 E-value=0.00017 Score=53.27 Aligned_cols=91 Identities=15% Similarity=0.160 Sum_probs=45.1
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCH
Q 036340 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNV 515 (579)
Q Consensus 438 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 515 (579)
...+...|++++|...++.+.+. .+.+...+..++.++...|++++|.+.++.. ...| +...+..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33444445555555555544421 1112233444455555555555555555443 1122 334555555566666666
Q ss_pred HHHHHHHHHHhhcCC
Q 036340 516 ELAQVAAEALMKVEP 530 (579)
Q Consensus 516 ~~A~~~~~~~~~~~p 530 (579)
+.|...++++.+..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666665555
No 180
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.77 E-value=1.4e-05 Score=71.45 Aligned_cols=280 Identities=13% Similarity=0.039 Sum_probs=129.6
Q ss_pred HHHHhCCCHHHHHHHHHHhccCCC-CCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHH
Q 036340 130 SGLIQNGELDEAARVLVKCGSRCD-GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208 (579)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (579)
.-+++.|+....+.+|+.+++.+- ....-...|..|.++|.-.+++++|+++...=+...+....+.| ...+...|
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG---EAKssgNL 101 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG---EAKSSGNL 101 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc---cccccccc
Confidence 457888999999999998887521 11112335777888888889999998875432110000000111 12223345
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---------CChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 036340 209 IMCYAKAGDVVSAREIFEQMLE---------RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279 (579)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 279 (579)
.+.+--.|.+++|.-...+-+. ....++..+...|...|+.-....- .+...++.=+. ..
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p------ee~g~f~~ev~-----~a 170 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP------EEKGAFNAEVT-----SA 170 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh------hhcccccHHHH-----HH
Confidence 5556666777777655443322 1234555666666655431100000 00000000000 00
Q ss_pred HHHHHHHHccCC-------C--CChhhHHHHHHHHHhCCCchHHHHHHHH----HHHcCCC-CChhhHHHHHHhccCCCc
Q 036340 280 LELALDFFKRMP-------Q--KNLVSWNSMIAGCETNKDYEGAIKLFIQ----MQVEGEK-PDRHTFSSILSMSSGIVD 345 (579)
Q Consensus 280 ~~~A~~~~~~~~-------~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~ 345 (579)
++.|.++|.+-. . .--..|..|...|.-.|+++.|+..-+. ..+-|.+ .....+..+..++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 111111111110 0 0111333344444444555554433222 1111211 112233344444444555
Q ss_pred hhhHHHHHHH-H----hhc-CCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--------CCCCeeeHHHHHHHHHhcCC
Q 036340 346 LHLGMQIHQM-V----TKT-VIPDVPINNALITMYARCGAIVEARIIFEEMK--------LLKNVVSWNAMIGGCASHGF 411 (579)
Q Consensus 346 ~~~a~~~~~~-~----~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~ 411 (579)
++.|.+.++. . +-+ -........+|.+.|.-..++++|+.++..-. ......++-+|..+|...|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 5555554443 1 111 11233445566666666667777776665421 12234456667777777777
Q ss_pred hHHHHHHHHHhH
Q 036340 412 ATEALELFKSMR 423 (579)
Q Consensus 412 ~~~A~~~~~~~~ 423 (579)
.++|+.+.+.-.
T Consensus 331 h~kAl~fae~hl 342 (639)
T KOG1130|consen 331 HRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHH
Confidence 777776665544
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.76 E-value=0.0015 Score=59.33 Aligned_cols=154 Identities=20% Similarity=0.303 Sum_probs=90.1
Q ss_pred HHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhC-CCHHHHHHHHHHhccCCC--C-CCCchhhHHHHHHHHhhCC
Q 036340 98 ISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN-GELDEAARVLVKCGSRCD--G-GEDLVRAYNTLIVGYGQRG 173 (579)
Q Consensus 98 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~g 173 (579)
+..|...|++..|-..+ ..+...|... |++++|++.|+++..... + .......+..++..+.+.|
T Consensus 101 ~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 45666666666665554 4467778787 899999999998765321 1 1112345778889999999
Q ss_pred CHHHHHHHHccccccCCCCCCCccCCcchH-HHHHHHHHHHhcCCHHHHHHHHHhcCCCCh--------hHHHHHHHHHH
Q 036340 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIV-SWNSMIMCYAKAGDVVSAREIFEQMLERDT--------FSWNTMISGYI 244 (579)
Q Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~ 244 (579)
++++|.++|+++...+.. ......+.. .+...+-++...||+..|...+++....++ .....++.++-
T Consensus 170 ~y~~A~~~~e~~~~~~l~---~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLE---NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp -HHHHHHHHHHHHHTCCC---HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhc---ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 999999999988632210 111122332 234455577788999999999998865432 12333444443
Q ss_pred h--cCChHHHHHHhhcCCCCChh
Q 036340 245 H--VLDMEEASNLFVKMPHPDTL 265 (579)
Q Consensus 245 ~--~~~~~~a~~~~~~~~~~~~~ 265 (579)
. ...+..++.-|+.+.+.|..
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---HH
T ss_pred hCCHHHHHHHHHHHcccCccHHH
Confidence 2 23455555556555555543
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.71 E-value=0.00011 Score=65.98 Aligned_cols=128 Identities=14% Similarity=0.055 Sum_probs=85.7
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHH---hHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-------CC-CCCHH
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKS---MVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-------PF-EPDKA 500 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~~~~~ 500 (579)
.|..|...|.-.|+++.|+...+. +.+++|-+. ....+..++.+++-.|+++.|.+.++.. +. .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 566677777778888888776543 223344333 3456677888888888888888887754 21 12344
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhhc----C--CCCCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 501 VWGALLGACRVHNNVELAQVAAEALMKV----E--PENSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 501 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
+...+...|.-..+++.|+.+..+=+.+ + .....+++.|+.++...|..++|+.+.+.-+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5566777777777888888877665432 1 2234568888888888888888887766543
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.71 E-value=0.0055 Score=49.08 Aligned_cols=134 Identities=10% Similarity=0.073 Sum_probs=97.9
Q ss_pred CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchh
Q 036340 392 LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP-TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF 470 (579)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 470 (579)
..|++..-..|..++...|+..+|...|++... |+-. |......+.++....+++..|...++++.+-..-.-++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 456666667788888889999999999988876 5444 55577788888888899999999888887542222245667
Q ss_pred HHHHHHhhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 036340 471 ASLVDIVGRHGRLEDAMDLIKGM-PFEPDKAVWGALLGACRVHNNVELAQVAAEALM 526 (579)
Q Consensus 471 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 526 (579)
..++..|...|++++|..-|+.. ..-|++..-......+.++|...++..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 77888888999999888888876 455666666556666777776666655544443
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.71 E-value=0.00068 Score=51.43 Aligned_cols=110 Identities=21% Similarity=0.151 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCc---c
Q 036340 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR---N 201 (579)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~ 201 (579)
...+..++...|+.++|+.+|++....+...+....++..+...+...|++++|..+++..... ++. +
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---------~p~~~~~ 74 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---------FPDDELN 74 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------CCCcccc
Confidence 3456667778888888888888888763223333456777888888888888888888877621 111 2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 036340 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGY 243 (579)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 243 (579)
......+..++...|+.++|++.+-..+.++...|..-|..|
T Consensus 75 ~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 75 AALRVFLALALYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333455677788888888877766555544444444443
No 185
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.69 E-value=0.022 Score=54.69 Aligned_cols=180 Identities=15% Similarity=0.156 Sum_probs=93.5
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhccC--CCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhc
Q 036340 365 PINNALITMYARCGAIVEARIIFEEMKL--LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442 (579)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 442 (579)
..|..-+.--...|+.+...-+|+...+ ..-...|-..+.-....|+.+-|..++....+--.+-.+.+-..-.....
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 3444455555566677777666666541 11223344444444445766666666665544322222222222222334
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHhhccCChHHHH---HHHHhC-CCCCCHHHHH----HHHHH-Hhhc
Q 036340 443 HAGLVEEGRQHFKSMVNEYGIEPR-IEHFASLVDIVGRHGRLEDAM---DLIKGM-PFEPDKAVWG----ALLGA-CRVH 512 (579)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~~~~~~~~----~l~~~-~~~~ 512 (579)
..|+++.|..+++.+..+ . |+ ...-..-+....+.|..+.+. .++... +...+..... ...+. +.-.
T Consensus 378 ~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred hhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 566777777777777654 2 43 233333344555667766666 333332 1122222222 22222 3345
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcC
Q 036340 513 NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547 (579)
Q Consensus 513 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 547 (579)
++.+.|..++.++.+..|++...|..+......++
T Consensus 455 ~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 67777777777777777777766666666655554
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.68 E-value=0.00065 Score=56.31 Aligned_cols=94 Identities=14% Similarity=-0.036 Sum_probs=64.8
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcch
Q 036340 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202 (579)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 202 (579)
..+..++..+...|++++|+..|++++...+.......++..++.++...|++++|+..++..... .+...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---------~~~~~ 106 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---------NPFLP 106 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CcCcH
Confidence 456667777788899999999999887643222223457888999999999999999999988721 12234
Q ss_pred HHHHHHHHHHH-------hcCCHHHHHHHH
Q 036340 203 VSWNSMIMCYA-------KAGDVVSAREIF 225 (579)
Q Consensus 203 ~~~~~l~~~~~-------~~~~~~~A~~~~ 225 (579)
.++..+..++. ..|+++.|...+
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 55666666666 666766444433
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.66 E-value=0.0019 Score=56.81 Aligned_cols=79 Identities=14% Similarity=0.042 Sum_probs=50.0
Q ss_pred chhhHHHHHHHHHhcCChhhHHHHHccCCCC--Ccc----hHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHH
Q 036340 90 NVVSWNAMISGFLQNGDVANAIEFFDRMPGR--DSA----SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN 163 (579)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 163 (579)
++..+-.....+...|++++|.+.|+.+... +.. ....++.++.+.+++++|...+++.++..|..+....++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3333444555666677777777777776542 221 1234566777888888888888888887666665555555
Q ss_pred HHHHH
Q 036340 164 TLIVG 168 (579)
Q Consensus 164 ~l~~~ 168 (579)
.++.+
T Consensus 111 ~~g~~ 115 (243)
T PRK10866 111 MRGLT 115 (243)
T ss_pred HHHHh
Confidence 55544
No 188
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.00074 Score=60.98 Aligned_cols=133 Identities=14% Similarity=0.203 Sum_probs=97.0
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHH-hcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHH
Q 036340 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA-CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476 (579)
Q Consensus 398 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 476 (579)
+|..++....+.+..+.|..+|.+..+.+ ..+...|...+.. +...++.+.|..+|+..++.+ ..+...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 57778888888888999999999998532 2233455544443 333577777999999998764 4566778888888
Q ss_pred hhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC
Q 036340 477 VGRHGRLEDAMDLIKGM-PFEPD----KAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533 (579)
Q Consensus 477 ~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 533 (579)
+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+....+.+++.+..|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999987 22232 34888888888899999999999999998887754
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.61 E-value=5.9e-05 Score=51.54 Aligned_cols=64 Identities=22% Similarity=0.265 Sum_probs=48.9
Q ss_pred cchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHHhhcCC
Q 036340 467 IEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHN-NVELAQVAAEALMKVEP 530 (579)
Q Consensus 467 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 530 (579)
+..|..++..+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445667777777788888888777776 3344 5667888888888888 68899999999888887
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.61 E-value=0.0048 Score=54.26 Aligned_cols=173 Identities=13% Similarity=0.067 Sum_probs=103.7
Q ss_pred HHHHHhhhcCCHHHHHHHHHhcc-CCCCeee----HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh--hhHHHHHHHh
Q 036340 369 ALITMYARCGAIVEARIIFEEMK-LLKNVVS----WNAMIGGCASHGFATEALELFKSMRSFKVLPTY--ITFISVLSAC 441 (579)
Q Consensus 369 ~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~ 441 (579)
..+..+...|++++|.+.|+++. ..|+... .-.++.++.+.+++++|...+++..+. .|+. ..+.....+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHH
Confidence 34555566788888888888775 2333221 234566777888888888888888754 3332 2333333332
Q ss_pred cc--c------------------CcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHH
Q 036340 442 AH--A------------------GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAV 501 (579)
Q Consensus 442 ~~--~------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 501 (579)
+. . .....|...|+.+++.+ |+. .-..+|...+..+....-..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~la~~- 177 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRLAKY- 177 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHHHHH-
Confidence 21 1 11234445555555432 322 22333333333221110011
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC---CchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 502 WGALLGACRVHNNVELAQVAAEALMKVEPENST---PYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 502 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
-..+.+-|.+.|.+..|+.-++.+++..|+.+. ++..++.+|...|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 113456688899999999999999998887654 57788899999999999999887664
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.60 E-value=0.00065 Score=66.60 Aligned_cols=137 Identities=14% Similarity=0.050 Sum_probs=97.9
Q ss_pred CCCCChhhHHHHHHHhcc-----cCcHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHhhcc--------CChHHHHHHHH
Q 036340 426 KVLPTYITFISVLSACAH-----AGLVEEGRQHFKSMVNEYGIEPRI-EHFASLVDIVGRH--------GRLEDAMDLIK 491 (579)
Q Consensus 426 ~~~p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------g~~~~A~~~~~ 491 (579)
+.+.+...|...+++... .+....|..+|+++++ ..|+- ..+..++.++... ++...+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 445566788888876432 2347799999999985 46753 4444444443321 12334444444
Q ss_pred hC---C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCC
Q 036340 492 GM---P-FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566 (579)
Q Consensus 492 ~~---~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 566 (579)
+. + ...++..+..+.......|++++|...+++++.++|+ ..+|..++.++...|+.++|.+.+++....+...
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 43 1 2335677777777777789999999999999999995 6789999999999999999999999988776543
No 192
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.097 Score=51.74 Aligned_cols=358 Identities=11% Similarity=0.077 Sum_probs=185.3
Q ss_pred HHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHH-----HHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHH
Q 036340 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS-----MIMCYAKAGDVVSAREIFEQMLERD---TFSWNT 238 (579)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ 238 (579)
.++.+.-++++-..+.+.++..+.......|++-+..-|.. +++-+...+.+..|.++-..+..|. ...|..
T Consensus 397 k~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~ 476 (829)
T KOG2280|consen 397 KASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLE 476 (829)
T ss_pred ccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHH
Confidence 33444555665555444443222222235677777666654 4556677888999999988887664 566777
Q ss_pred HHHHHHhcCC---hHHHHHHhhcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHccCCCC--------ChhhHHHHHHHH
Q 036340 239 MISGYIHVLD---MEEASNLFVKMPH--PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK--------NLVSWNSMIAGC 305 (579)
Q Consensus 239 l~~~~~~~~~---~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~ 305 (579)
....+.+..+ .+-+..+-+++.. -....|..+..-....|+.+.|..+++.=... +...+..-+.-+
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 7777766532 2233333334333 34456777888888899999999998754321 222344445556
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH-HhhcCCCCchHHHHHHHHhhhcCCHHHHH
Q 036340 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAIVEAR 384 (579)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 384 (579)
...|+.+-...++-.+...- +...|...+ .+...|..++.. .++... ..+-..|....+....-
T Consensus 557 ies~d~~Li~~Vllhlk~~~---~~s~l~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a 621 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNKL---NRSSLFMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALA 621 (829)
T ss_pred HhcCCchhHHHHHHHHHHHH---HHHHHHHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhh
Confidence 66777777666665554321 111111111 111222222222 111100 00111121112222111
Q ss_pred HHHHhcc-----CCCCeeeHHHHHHHHHhcCC----------hHHHHHHHHHhHh-CCCCCChhhHHHHHHHhcccCcHH
Q 036340 385 IIFEEMK-----LLKNVVSWNAMIGGCASHGF----------ATEALELFKSMRS-FKVLPTYITFISVLSACAHAGLVE 448 (579)
Q Consensus 385 ~~~~~~~-----~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~ 448 (579)
.+.-+-. ..+-..........+.+... ..+-+.+.+.+.. .|..-...+.+--+.-+...|+..
T Consensus 622 ~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k 701 (829)
T KOG2280|consen 622 SFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNK 701 (829)
T ss_pred hhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchH
Confidence 1111110 11112222333333433322 1111222222221 122233334455555566677777
Q ss_pred HHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhc
Q 036340 449 EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV 528 (579)
Q Consensus 449 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 528 (579)
+|.++-.+.. -||...|..-+.+++..+++++-+++-+... .+..|.-+..+|.+.|+.++|..++-+.-.
T Consensus 702 ~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~- 772 (829)
T KOG2280|consen 702 RAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG- 772 (829)
T ss_pred HHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC-
Confidence 7777755442 4677777777778888888887777766653 245566677777888888887766654321
Q ss_pred CCCCCCCchhhhhhhhhcCCchHHHHH
Q 036340 529 EPENSTPYVLLYNMYADVGRWDDANEV 555 (579)
Q Consensus 529 ~p~~~~~~~~l~~~~~~~g~~~~A~~~ 555 (579)
+...+.+|.+.|++.+|.+.
T Consensus 773 -------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 773 -------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred -------hHHHHHHHHHhccHHHHHHH
Confidence 11456777778887777655
No 193
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.55 E-value=0.00013 Score=40.34 Aligned_cols=29 Identities=38% Similarity=0.606 Sum_probs=22.4
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHhHhCC
Q 036340 398 SWNAMIGGCASHGFATEALELFKSMRSFK 426 (579)
Q Consensus 398 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 426 (579)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 67777778888888888888887777665
No 194
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.54 E-value=2.4e-05 Score=44.00 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=30.9
Q ss_pred HHHHhhcCCCCCCCchhhhhhhhhcCCchHHHH
Q 036340 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANE 554 (579)
Q Consensus 522 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 554 (579)
|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999863
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.0058 Score=51.88 Aligned_cols=57 Identities=7% Similarity=0.027 Sum_probs=26.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhH
Q 036340 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458 (579)
Q Consensus 402 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 458 (579)
++..+.-.|.+.-.+..+.+.++...+.++.....|.+.-.+.|+.+.|..+|++..
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 333344444444455555555543222233344444444445555555555555443
No 196
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.53 E-value=0.00013 Score=40.30 Aligned_cols=31 Identities=32% Similarity=0.569 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 036340 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326 (579)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 326 (579)
++|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688889999999999999999998887764
No 197
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.53 E-value=0.0068 Score=55.78 Aligned_cols=167 Identities=15% Similarity=0.044 Sum_probs=110.6
Q ss_pred CchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCe------eeHHHHHHHHHh---cCChHHHHHHHHHhHhCCCCCChhh
Q 036340 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNV------VSWNAMIGGCAS---HGFATEALELFKSMRSFKVLPTYIT 433 (579)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~ 433 (579)
++.+...++-+|....+++..+++.+.+...|+. ..-....-++.+ .|+.++|++++..+....-.+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3344456667788889999999999988744422 112234455666 7999999999999666666778888
Q ss_pred HHHHHHHhc---------ccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHH----HHHHH---Hh-C---
Q 036340 434 FISVLSACA---------HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED----AMDLI---KG-M--- 493 (579)
Q Consensus 434 ~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~---~~-~--- 493 (579)
|..+.+.|- .....++|+..|.+.- .+.|+...-..++..+...|...+ ..++- .. .
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 888877652 2335778888887654 445655443444444555553222 22222 11 1
Q ss_pred ---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC
Q 036340 494 ---PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 494 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 532 (579)
....+-..+..++.++.-.|++++|.+.++++.++.|+.
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 123455566778888889999999999999999998763
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.52 E-value=0.00034 Score=61.82 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=52.5
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC----CHHHHHHHH
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP----DKAVWGALL 506 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~ 506 (579)
.|......+.+.|++++|...|+.+++.+.-.+ ....+..++.+|...|++++|...|+.+ ...| ....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344433333455666777666666665421111 1234555666666666666666666555 1111 233444444
Q ss_pred HHHhhcCCHHHHHHHHHHHhhcCCCC
Q 036340 507 GACRVHNNVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 507 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 532 (579)
..+...|+.++|...|+++++..|++
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 55555666666666666666666654
No 199
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.52 E-value=0.073 Score=48.79 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc
Q 036340 204 SWNSMIMCYAKAGDVVSAREIFEQM 228 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (579)
+|..++......|+..-|..+++.=
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~E 26 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELE 26 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcC
Confidence 4666777778888888888777654
No 200
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.51 E-value=0.0012 Score=60.02 Aligned_cols=166 Identities=13% Similarity=0.123 Sum_probs=103.9
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhcc-----C-CCC--eeeHHHHHHHHHhcCChHHHHHHHHHhHh----CCCCCCh--hh
Q 036340 368 NALITMYARCGAIVEARIIFEEMK-----L-LKN--VVSWNAMIGGCASHGFATEALELFKSMRS----FKVLPTY--IT 433 (579)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~-----~-~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~~--~~ 433 (579)
......|...+++++|.+.|.... . .+. ...|.....+|.+. ++++|++.+++..+ .| .|+. ..
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~ 116 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHH
Confidence 345556666677776666665542 0 110 12244444445444 78888888877653 33 3332 26
Q ss_pred HHHHHHHhccc-CcHHHHHHHHHHhHHhhCCCCC----cchhHHHHHHhhccCChHHHHHHHHhCC---C-----CCCHH
Q 036340 434 FISVLSACAHA-GLVEEGRQHFKSMVNEYGIEPR----IEHFASLVDIVGRHGRLEDAMDLIKGMP---F-----EPDKA 500 (579)
Q Consensus 434 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~~~~~ 500 (579)
+..+...|... |+++.|++.|+++..-+..... ..++..++..+.+.|++++|.++|++.. . +.+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 77778888888 9999999999988764322222 3566788899999999999999998861 1 11222
Q ss_pred -HHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCC
Q 036340 501 -VWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535 (579)
Q Consensus 501 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 535 (579)
.+...+-++...||...|...+++.....|.-..+
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 22333445667899999999999999998875544
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.50 E-value=0.00032 Score=47.68 Aligned_cols=51 Identities=27% Similarity=0.386 Sum_probs=44.6
Q ss_pred HhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
...|++++|++.|+++.. ..|.+..++..++.++.+.|++++|.++++.+.
T Consensus 2 l~~~~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ---RNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH---HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 568999999999999988 556688888899999999999999999999997
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.49 E-value=0.0011 Score=58.61 Aligned_cols=85 Identities=15% Similarity=0.053 Sum_probs=49.5
Q ss_pred hccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC---CCchhhhhhhhhcCCc
Q 036340 478 GRHGRLEDAMDLIKGM-PFEPD----KAVWGALLGACRVHNNVELAQVAAEALMKVEPENS---TPYVLLYNMYADVGRW 549 (579)
Q Consensus 478 ~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~ 549 (579)
.+.|++++|...|+.+ ...|+ +..+..++.++...|++++|...|+++++..|+++ .++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 4456666666666655 22222 23455555666666666666666666666655543 3344556666666666
Q ss_pred hHHHHHHHHHHhC
Q 036340 550 DDANEVRLLMKSN 562 (579)
Q Consensus 550 ~~A~~~~~~~~~~ 562 (579)
++|.++++++.+.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666543
No 203
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.41 E-value=0.00015 Score=43.95 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhh
Q 036340 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541 (579)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 541 (579)
.++..+..++...|++++|+..|+++++..|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999988887764
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.40 E-value=0.00042 Score=64.30 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=33.3
Q ss_pred cchhHHHHHHhhccCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHhhc
Q 036340 467 IEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPDK----AVWGALLGACRVHNNVELAQVAAEALMKV 528 (579)
Q Consensus 467 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 528 (579)
...+..++.+|...|++++|+..|++. ...|+. ..|.++..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555555555555555553 344432 23555555555555555555555555554
No 205
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.18 Score=50.05 Aligned_cols=342 Identities=15% Similarity=0.046 Sum_probs=187.0
Q ss_pred HHHHhccCCCCCCCchhhHH-----HHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcC--
Q 036340 144 VLVKCGSRCDGGEDLVRAYN-----TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG-- 216 (579)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 216 (579)
++.......-|.|.+..-|. .++.-+...+.+..|+++-+.+... . .....+|......+.+..
T Consensus 417 Vln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p--------~-~~~~~Vl~~Wa~~kI~~~d~ 487 (829)
T KOG2280|consen 417 VLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLP--------E-SQGDRVLLEWARRKIKQSDK 487 (829)
T ss_pred HHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCc--------c-ccccHHHHHHHHHHHhccCc
Confidence 33333333346666655554 3556677788999999998888511 1 111456777777777663
Q ss_pred -CHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHccCCCC
Q 036340 217 -DVVSAREIFEQMLE--RDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQK 293 (579)
Q Consensus 217 -~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 293 (579)
+-+.+..+-+++.. ....+|..++......|+.+-|..+++.- |+..... -.+.+.++.+.|+.---+...+
T Consensus 488 ~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E--~~~~~qV---~lLL~m~~~~~AL~kaies~d~ 562 (829)
T KOG2280|consen 488 MDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELE--PRSGEQV---PLLLKMKDSSLALKKAIESGDT 562 (829)
T ss_pred cchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcC--CCccchh---HHHhccchHHHHHHHHHhcCCc
Confidence 33334444444444 35567888898889999999999988763 3332211 1123334444444333222222
Q ss_pred Chhh------HHHHHH--HHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH----HhhcCC
Q 036340 294 NLVS------WNSMIA--GCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM----VTKTVI 361 (579)
Q Consensus 294 ~~~~------~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~ 361 (579)
+..+ .+.+.. .+....+...|..+|.+..+..-. .+. -..+ ..++...+..-+.. ....+.
T Consensus 563 ~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~---~~l---~d~y-~q~dn~~~~a~~~~q~~~~~~~~~ 635 (829)
T KOG2280|consen 563 DLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDR---ATL---YDFY-NQDDNHQALASFHLQASYAAETIE 635 (829)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhch---hhh---hhhh-hcccchhhhhhhhhhhhhhhhhhc
Confidence 2221 111111 112223445566666665442211 111 1112 22222222221111 011122
Q ss_pred CCchHHHHHHHHhhhcCCHHHHH----------HHHHhcc----CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCC
Q 036340 362 PDVPINNALITMYARCGAIVEAR----------IIFEEMK----LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV 427 (579)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~A~----------~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 427 (579)
+...........+.+.....-.. .+.+.+. ..-...+.+--+.-+...|+..+|.++-.+..
T Consensus 636 ~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---- 711 (829)
T KOG2280|consen 636 GRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---- 711 (829)
T ss_pred ccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----
Confidence 22223333444444433311111 1112221 11233456667777888899899988887775
Q ss_pred CCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 036340 428 LPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507 (579)
Q Consensus 428 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 507 (579)
-|+...|..=+.+++..+++++-+++-+... ++.-|.-.+..+.+.|+.++|.+++-+.+.-+ ....
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ 778 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVK 778 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHH
Confidence 5777778777888999999988877654332 24566778888899999999999988775322 4556
Q ss_pred HHhhcCCHHHHHHHHH
Q 036340 508 ACRVHNNVELAQVAAE 523 (579)
Q Consensus 508 ~~~~~~~~~~A~~~~~ 523 (579)
+|.+.|++.+|.+..-
T Consensus 779 ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 779 AYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhccHHHHHHHHH
Confidence 6777788877766543
No 206
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.35 E-value=0.0033 Score=59.14 Aligned_cols=118 Identities=13% Similarity=0.052 Sum_probs=62.3
Q ss_pred CCCChhhHHHHHHhccCCCchhhHHHHHHH-Hhh--cCCCCchHHHHHHHHhhhcCCHHHHHHHHHhc---cCCCCeeeH
Q 036340 326 EKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTK--TVIPDVPINNALITMYARCGAIVEARIIFEEM---KLLKNVVSW 399 (579)
Q Consensus 326 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~ 399 (579)
...+...+..++..+....+.+.+..++-. ... .....+.+..++++.|...|..+.+..++..= .+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 334455555555666555555555555433 111 12122233346666666666666666666542 144566666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcc
Q 036340 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443 (579)
Q Consensus 400 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 443 (579)
|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666666665555544555555444444433
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.33 E-value=0.004 Score=47.34 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCh--hhHHHHHHhccCCCchhhHHHHHHH
Q 036340 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDR--HTFSSILSMSSGIVDLHLGMQIHQM 355 (579)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~ 355 (579)
.+..++...|+.++|+.+|++....|..... ..+..+..++...|++++|..+++.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~ 63 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEE 63 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4456677778888888888888877755432 2222333334444444444444444
No 208
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.32 E-value=0.00088 Score=60.51 Aligned_cols=129 Identities=12% Similarity=0.146 Sum_probs=100.9
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhc-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 036340 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR-HGRLEDAMDLIKGM--PFEPDKAVWGALLGA 508 (579)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 508 (579)
.+|..+++...+.+..+.|..+|.++.+. ..-+..+|...+.+-.. .++.+.|..+|+.. .+..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778888888889999999999999742 23356777777777445 56677799999987 355678889999999
Q ss_pred HhhcCCHHHHHHHHHHHhhcCCCCC---CCchhhhhhhhhcCCchHHHHHHHHHHhC
Q 036340 509 CRVHNNVELAQVAAEALMKVEPENS---TPYVLLYNMYADVGRWDDANEVRLLMKSN 562 (579)
Q Consensus 509 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (579)
+...|+.+.|..+|++++..-|.+. ..|...+..-.+.|+.+....+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998776654 46888888889999999999999888764
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.32 E-value=0.00034 Score=48.40 Aligned_cols=61 Identities=16% Similarity=0.293 Sum_probs=46.0
Q ss_pred HHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCC
Q 036340 475 DIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535 (579)
Q Consensus 475 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 535 (579)
.+|.+.+++++|.++++.+ ...| ++..|...+.++...|++++|...++++++..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4567778888888888776 3444 56677777778888888888888888888888876653
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.23 E-value=0.0045 Score=53.00 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=47.3
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
......+..+...|++.+|.+.|+.+....+..+-...+...++.++.+.|+++.|...++..+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445556667778888888888888888766666666777888888888888888888888876
No 211
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0021 Score=58.33 Aligned_cols=93 Identities=12% Similarity=0.109 Sum_probs=75.8
Q ss_pred chhHHHHHHhhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhh
Q 036340 468 EHFASLVDIVGRHGRLEDAMDLIKGM-PF-EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545 (579)
Q Consensus 468 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 545 (579)
.++..++.++.+.+++.+|+....+. .. ++|...+-.-..++...|+++.|+..|+++++++|+|-.+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 46778888999999999999988887 43 44777888888999999999999999999999999998888888777666
Q ss_pred cCCchHH-HHHHHHHH
Q 036340 546 VGRWDDA-NEVRLLMK 560 (579)
Q Consensus 546 ~g~~~~A-~~~~~~~~ 560 (579)
...+.+. .++|..|-
T Consensus 338 ~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6655544 67787774
No 212
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0098 Score=52.11 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=84.4
Q ss_pred CC-ChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccC---ChHHHHHHHHhC-CCCC-CHHH
Q 036340 428 LP-TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG---RLEDAMDLIKGM-PFEP-DKAV 501 (579)
Q Consensus 428 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~-~~~~ 501 (579)
.| |...|..|...|...|+++.|...|....+- ..+++..+..+++++..+. +..++..+|+++ ..+| |+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 45 4558999999999999999999999988743 2335677777777765433 456788888887 4455 6667
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhh
Q 036340 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541 (579)
Q Consensus 502 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 541 (579)
...+...+...|++.+|...|+.+++..|.+.. +..++.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~-rr~~ie 268 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP-RRSLIE 268 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc-hHHHHH
Confidence 777788899999999999999999998888654 555443
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.20 E-value=0.095 Score=50.82 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=44.3
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCC-CCCCHH-----------
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP-FEPDKA----------- 500 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~----------- 500 (579)
+...+...+.+...+..|.++|.+|-.. ..++......+++++|..+-++.+ ..|++.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 3444444444555555666666555321 345555566666666666666552 222221
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhh
Q 036340 501 VWGALLGACRVHNNVELAQVAAEALMK 527 (579)
Q Consensus 501 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 527 (579)
-+...-.++.+.|+..+|.++++++..
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122222445566777777777777653
No 214
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.16 E-value=0.0031 Score=45.96 Aligned_cols=78 Identities=14% Similarity=0.245 Sum_probs=58.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhCCC-CCChhhHHHHHHHhccc--------CcHHHHHHHHHHhHHhhCCCCCcchhH
Q 036340 401 AMIGGCASHGFATEALELFKSMRSFKV-LPTYITFISVLSACAHA--------GLVEEGRQHFKSMVNEYGIEPRIEHFA 471 (579)
Q Consensus 401 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 471 (579)
..|..+...+++.....+|+.+++.|+ -|+..+|+.++.+..+. +++-..+.+|+.|+.. +++|+.++|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHH
Confidence 345556666888888888998888888 78888888888865442 2345677788888766 7888888888
Q ss_pred HHHHHhhc
Q 036340 472 SLVDIVGR 479 (579)
Q Consensus 472 ~l~~~~~~ 479 (579)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 87776543
No 215
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.15 E-value=0.0065 Score=57.23 Aligned_cols=101 Identities=21% Similarity=0.215 Sum_probs=78.7
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcc
Q 036340 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201 (579)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 201 (579)
+.....++.......+++.+..++-+.............+..++++.|...|..++++.+++.=. ..|+-||
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~--------~yGiF~D 137 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRL--------QYGIFPD 137 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChh--------hcccCCC
Confidence 33445566666666778888888877766532333334566799999999999999999998887 7899999
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 036340 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLE 230 (579)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 230 (579)
..+++.|++.+.+.|++..|.++...|..
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~l 166 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMML 166 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 99999999999999999999998887744
No 216
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.11 E-value=0.22 Score=45.75 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=52.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 036340 208 MIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFF 287 (579)
Q Consensus 208 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 287 (579)
-+.-+...|+...|.++-.+..=|+..-|...+.+++..++|++-..+... +.++.-|..++..+.+.|+..+|..++
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI 260 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYI 260 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHH
Confidence 344444555555555555555445555555555555555555555444332 223445555555555555555555555
Q ss_pred ccCCCCChhhHHHHHHHHHhCCCchHHHHH
Q 036340 288 KRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317 (579)
Q Consensus 288 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (579)
.++ .+..-+..|.+.|++.+|.+.
T Consensus 261 ~k~------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 261 PKI------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HhC------ChHHHHHHHHHCCCHHHHHHH
Confidence 542 123444445555555555444
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.10 E-value=0.0059 Score=47.28 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=64.5
Q ss_pred HHHHhhccCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCC---chhhhhhhh
Q 036340 473 LVDIVGRHGRLEDAMDLIKGM----PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP---YVLLYNMYA 544 (579)
Q Consensus 473 l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~ 544 (579)
-+....+.|++++|.+.|+.+ +..| ....-..++.++.+.+++++|+..+++.++++|.++.+ +...+.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 344456788888888888877 2333 44566677888899999999999999999999988764 444455555
Q ss_pred hcCC---------------chHHHHHHHHHHhC
Q 036340 545 DVGR---------------WDDANEVRLLMKSN 562 (579)
Q Consensus 545 ~~g~---------------~~~A~~~~~~~~~~ 562 (579)
++.. ..+|..-|+++++.
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 5554 66777777777653
No 218
>PRK11906 transcriptional regulator; Provisional
Probab=96.98 E-value=0.0054 Score=57.35 Aligned_cols=158 Identities=11% Similarity=0.117 Sum_probs=98.5
Q ss_pred eeH--HHHHHHHHhc-----CChHHHHHHHHHhH-hCCCCCChh-hHHHHHHHhcc---------cCcHHHHHHHHHHhH
Q 036340 397 VSW--NAMIGGCASH-----GFATEALELFKSMR-SFKVLPTYI-TFISVLSACAH---------AGLVEEGRQHFKSMV 458 (579)
Q Consensus 397 ~~~--~~l~~~~~~~-----~~~~~A~~~~~~~~-~~~~~p~~~-~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 458 (579)
..| ..++.+.... ...+.|+.+|.+.. ...+.|+.. .|..+..++.. .....+|.++-++.+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554431 23567888888887 223566654 66666665432 223445556655555
Q ss_pred HhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCC
Q 036340 459 NEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPD-KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535 (579)
Q Consensus 459 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 535 (579)
.+.| |+.....++.++.-.|+++.|...|++. ...|| ..+|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3344 5666667777777777788888888887 45564 4566666666777888888888888888888876543
Q ss_pred chhhhh--hhhhcCCchHHHHHHHH
Q 036340 536 YVLLYN--MYADVGRWDDANEVRLL 558 (579)
Q Consensus 536 ~~~l~~--~~~~~g~~~~A~~~~~~ 558 (579)
-..-.+ .|+..+ .++|..++-+
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 322222 344444 5777776543
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.96 E-value=0.013 Score=50.08 Aligned_cols=167 Identities=13% Similarity=0.112 Sum_probs=92.3
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhcc-CCCC----eeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh--hHHHHHHH
Q 036340 368 NALITMYARCGAIVEARIIFEEMK-LLKN----VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI--TFISVLSA 440 (579)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~ 440 (579)
...+..+...|++.+|...|+.+. .-|+ ......++.++.+.|+++.|...+++.++. .|+.. .+...+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHH
Confidence 344555667788888888888775 1222 223556677788888888888888887753 33322 22222222
Q ss_pred h-------------cccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 036340 441 C-------------AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLG 507 (579)
Q Consensus 441 ~-------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 507 (579)
. ...+...+|...|+.+++++ | ......+|...+..+.... ...-..++.
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y---P-------------~S~y~~~A~~~l~~l~~~l-a~~e~~ia~ 149 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY---P-------------NSEYAEEAKKRLAELRNRL-AEHELYIAR 149 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH----T-------------TSTTHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHHC---c-------------CchHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 1 11223345555555555442 2 2222333333333221000 001122456
Q ss_pred HHhhcCCHHHHHHHHHHHhhcCCCCCC---CchhhhhhhhhcCCchHHH
Q 036340 508 ACRVHNNVELAQVAAEALMKVEPENST---PYVLLYNMYADVGRWDDAN 553 (579)
Q Consensus 508 ~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 553 (579)
.|.+.|.+..|..-++.+++..|+.+. ++..++.+|.+.|..+.|.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 688899999999999999999988643 4677888888888877443
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.94 E-value=0.00045 Score=48.55 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhhc----CCC---CCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 500 AVWGALLGACRVHNNVELAQVAAEALMKV----EPE---NSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
.+++.+...+...|++++|+..|++++++ .++ -..++..++.++...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666777777777777777777777643 122 13457777888888888888888877654
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.013 Score=49.78 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHH
Q 036340 126 SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205 (579)
Q Consensus 126 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (579)
+.++..+.-.|.+.-..+.+.+.++. .++.++.....++..-.+.||.+.|...|+........ -.++..+..+.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~--~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k---L~~~q~~~~V~ 255 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKY--YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK---LDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHh--CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh---hhccchhHHHH
Confidence 34555555566666666666666664 44555556666666667777777777776644311100 11223333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC
Q 036340 206 NSMIMCYAKAGDVVSAREIFEQMLER 231 (579)
Q Consensus 206 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 231 (579)
......+.-.+++..|...+.+++..
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred hhhhhheecccchHHHHHHHhhcccc
Confidence 33444455556666666666666554
No 222
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.0085 Score=51.79 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=50.0
Q ss_pred cccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCH
Q 036340 442 AHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM----PFEP-DKAVWGALLGACRVHNNV 515 (579)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~ 515 (579)
...|++..|...|...++.+.-.+ ....+..|++++...|++++|..+|..+ +..| -+..+..+.......|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 344556666666666665432211 2334445566666666666666555544 2222 334555555555666666
Q ss_pred HHHHHHHHHHhhcCCCCC
Q 036340 516 ELAQVAAEALMKVEPENS 533 (579)
Q Consensus 516 ~~A~~~~~~~~~~~p~~~ 533 (579)
++|...|+++.+-.|+.+
T Consensus 232 d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 232 DEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHHCCCCH
Confidence 666666666666666644
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.86 E-value=0.16 Score=49.35 Aligned_cols=41 Identities=27% Similarity=0.271 Sum_probs=23.7
Q ss_pred HHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccc
Q 036340 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKI 185 (579)
Q Consensus 140 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 185 (579)
+-+.-++++.++ +..|+.. .+...++-.|++.+|.++|.+-
T Consensus 618 ~li~EL~~~k~r--ge~P~~i---LlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 618 ELISELEERKKR--GETPNDL---LLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHHHhc--CCCchHH---HHHHHHHhhhhHHHHHHHHHHc
Confidence 334445555554 4434432 3455566677888888877765
No 224
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.61 Score=46.72 Aligned_cols=147 Identities=13% Similarity=0.177 Sum_probs=98.9
Q ss_pred HHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCc---chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHH
Q 036340 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR---NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241 (579)
Q Consensus 165 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 241 (579)
-+..+.+.+.+++|+...+... |..| -...+..++..+.-.|+++.|-...-.|...+..-|...+.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~----------~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~ 431 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASI----------GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVF 431 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhcc----------CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHH
Confidence 4567788899999999988875 3344 35567788899999999999999999998888888888888
Q ss_pred HHHhcCChHHHHHHhhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHccCC--------------C------CChhhHHH
Q 036340 242 GYIHVLDMEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLELALDFFKRMP--------------Q------KNLVSWNS 300 (579)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------~------~~~~~~~~ 300 (579)
.+...++......++-.-. ..++..|..++..+.. .+...-.++...-. . .+...-..
T Consensus 432 ~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~ 510 (846)
T KOG2066|consen 432 KFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEV 510 (846)
T ss_pred HhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHH
Confidence 7777777665555443332 2345566666665554 22222222221111 0 12223445
Q ss_pred HHHHHHhCCCchHHHHHHHHHH
Q 036340 301 MIAGCETNKDYEGAIKLFIQMQ 322 (579)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~ 322 (579)
|+..|...+++..|+.++-..+
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 7888888888988888887654
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.79 E-value=0.0013 Score=46.14 Aligned_cols=30 Identities=10% Similarity=-0.052 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhhc
Q 036340 499 KAVWGALLGACRVHNNVELAQVAAEALMKV 528 (579)
Q Consensus 499 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 528 (579)
..++..++.++...|++++|++.+++++++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345666667777777777777777776643
No 226
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.74 E-value=0.036 Score=46.24 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCc
Q 036340 411 FATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446 (579)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 446 (579)
+.+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 457899999999999999999999999999876654
No 227
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.70 E-value=0.68 Score=45.05 Aligned_cols=398 Identities=12% Similarity=0.065 Sum_probs=199.6
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHccCCCCCcc---hHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHH
Q 036340 92 VSWNAMISGFLQNGDVANAIEFFDRMPGRDSA---SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVG 168 (579)
Q Consensus 92 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (579)
..|..++.--....+.+.+...+..+...-|. -|...+..-.+.|..+.+.++|++.+. +.|.+...|......
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~---aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ---AIPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---hhhhHHHHHHHHHHH
Confidence 34555555444445556666777776653332 234455555678889999999999888 677777777665554
Q ss_pred Hh-hCCCHHHHHHHHccccccCCCCCCCccCC-cchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHh-
Q 036340 169 YG-QRGRVEEARKLFDKIPVNCDRGEGNVRFK-RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH- 245 (579)
Q Consensus 169 ~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~- 245 (579)
+. ..|+.+.....|+.+.... |.. .+...|-..+..-..++++.....+|++.++.-...++.....|.+
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~v-------G~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYV-------GLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQL 195 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhc-------ccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHH
Confidence 43 4677888888888876332 222 2345677778777888888888888888877544333333322221
Q ss_pred --c------CChHHHHHHhhcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHccCCCCChh---hH-------HHHHHHHH
Q 036340 246 --V------LDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN-LELALDFFKRMPQKNLV---SW-------NSMIAGCE 306 (579)
Q Consensus 246 --~------~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~---~~-------~~l~~~~~ 306 (579)
. ...+++.++-...... ......+. .+.-....+....+... .. ...-..+.
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~---------~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~ 266 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAER---------SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQ 266 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhh---------hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 1112211111110000 00000000 11111111111111100 00 00011122
Q ss_pred hCCCchHHHHHHHHHHHcC---CC----CChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCC
Q 036340 307 TNKDYEGAIKLFIQMQVEG---EK----PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGA 379 (579)
Q Consensus 307 ~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 379 (579)
...........++.-+... ++ ++..+|...+.--.+.|+.+.....++...-.+..-...|-..+.-....|+
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc
Confidence 2222222333333322211 11 2233444455555556666666655555433333444455555555555577
Q ss_pred HHHHHHHHHhcc--CCCCeeeHHHHHHHH-HhcCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHH---H
Q 036340 380 IVEARIIFEEMK--LLKNVVSWNAMIGGC-ASHGFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGR---Q 452 (579)
Q Consensus 380 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~---~ 452 (579)
.+-|..++.... ..|+......+-..+ -..|++..|..+++...+. . |+.. .-..-+....+.|+.+.+. +
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 777776665442 122222222222222 2367889999999888874 3 6544 2222333445667777776 3
Q ss_pred HHHHhHHhhCCCCCcchhHHHHH-----HhhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHhhcC
Q 036340 453 HFKSMVNEYGIEPRIEHFASLVD-----IVGRHGRLEDAMDLIKGM-P-FEPDKAVWGALLGACRVHN 513 (579)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~ 513 (579)
++..... ..-+..+...+.- .+.-.++.+.|..++.++ + .+++...|..++..+...+
T Consensus 425 l~s~~~~---~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 425 LYSSIYE---GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcc---cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 3332221 1222222222221 123467888888888888 3 3456677777777665444
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0045 Score=56.35 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCC
Q 036340 499 KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566 (579)
Q Consensus 499 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 566 (579)
...+.++..++.+.+++..|++...+++.++|+|..+++.-+.+|...|+++.|+..|+++++..+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 34677888889999999999999999999999999999999999999999999999999998766544
No 229
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.61 E-value=0.62 Score=43.50 Aligned_cols=130 Identities=12% Similarity=0.074 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCC-CCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchh-HHHHHH
Q 036340 399 WNAMIGGCASHGFATEALELFKSMRSFK-VLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHF-ASLVDI 476 (579)
Q Consensus 399 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~ 476 (579)
|...+....+..-.+.|..+|-++.+.| +.++...++.++..+ ..|+...|..+|+.-+.. -||...| .....-
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~f 475 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK---FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh---CCCchHHHHHHHHH
Confidence 4444555555555667777777777666 445555666666544 346666777777665543 2333333 345555
Q ss_pred hhccCChHHHHHHHHhC----CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC
Q 036340 477 VGRHGRLEDAMDLIKGM----PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 477 ~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 532 (579)
+.+.++-+.|..+|+.. ....-...|..++.--..-|+...+..+-+++....|..
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 66677777777777644 111124466666666666677777777666666666664
No 230
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=1.1 Score=45.45 Aligned_cols=178 Identities=16% Similarity=0.172 Sum_probs=111.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHccCCCCC---cchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHh
Q 036340 94 WNAMISGFLQNGDVANAIEFFDRMPGRD---SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG 170 (579)
Q Consensus 94 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (579)
...-+..+.+..-++-|+.+.+.--.+. ...+.....-+.+.|++++|...|-+.+.. ..|. .++.-|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF---LEPS-----EVIKKFL 408 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---CChH-----HHHHHhc
Confidence 4455677777777788877776542221 123344555566889999999888887662 3332 2445555
Q ss_pred hCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hHHHHHHHHHHhcCCh
Q 036340 171 QRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT-FSWNTMISGYIHVLDM 249 (579)
Q Consensus 171 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 249 (579)
...+..+-..+++.+. +.|+. +...-..|+.+|.+.++.++-.++.+...+... .-....+..+.+.+-.
T Consensus 409 daq~IknLt~YLe~L~--------~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALH--------KKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYL 479 (933)
T ss_pred CHHHHHHHHHHHHHHH--------Hcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChH
Confidence 5556666666777776 44533 334456788999999999888888777652211 1244566667777777
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHccCCC
Q 036340 250 EEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ 292 (579)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 292 (579)
++|..+-.+... .......+ +-..|++++|.+++..+.-
T Consensus 480 ~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 480 DEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 777766655542 33333333 3456889999999988764
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.026 Score=48.87 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=79.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHH
Q 036340 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204 (579)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (579)
.....-.+...|++..|...|...++..|..+-...++..|++++...|+++.|..+|..+....+. -+--+.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------s~KApda 217 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------SPKAPDA 217 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC------CCCChHH
Confidence 3444555667888999999999999987777777888999999999999999999999988743211 1223466
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 036340 205 WNSMIMCYAKAGDVVSAREIFEQMLER 231 (579)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 231 (579)
+.-|..+..+.|+.++|...|+++.+.
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 778888899999999999999988763
No 232
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.051 Score=48.15 Aligned_cols=113 Identities=9% Similarity=-0.011 Sum_probs=46.7
Q ss_pred cCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhH----HHHHHhhccCChH
Q 036340 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA----SLVDIVGRHGRLE 484 (579)
Q Consensus 409 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~ 484 (579)
.|+..+|-..++++.+ ..+.|...+...=.+|+..|+.+.-...+++++.. ..|+..+|. .++-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3444444444444443 12223334443344444455544444444444321 133332222 1222334455555
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 036340 485 DAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEA 524 (579)
Q Consensus 485 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 524 (579)
+|.+.-++. ++.| |...-.+....+...|++.++.++..+
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555544444 2222 333444444444444555555444433
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.071 Score=46.74 Aligned_cols=121 Identities=14% Similarity=0.129 Sum_probs=84.5
Q ss_pred HhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHH---HHHHHhhcCCHH
Q 036340 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGA---LLGACRVHNNVE 516 (579)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~ 516 (579)
.....|++.+|...|...... .+-+......++++|...|+.+.|..++..++..-....+.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456788899999988888754 223466777888999999999999999998864433333333 223333333333
Q ss_pred HHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 517 LAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 517 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
+. ..+++-...+|+|...-..|+..+...|+.++|.+.+=.+.+++
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 32 22344556789988888999999999999999998877775543
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.44 E-value=0.059 Score=41.92 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=61.2
Q ss_pred HHHHHhcCChHHHHHHHHHhHhCCCCCC---hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhc
Q 036340 403 IGGCASHGFATEALELFKSMRSFKVLPT---YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479 (579)
Q Consensus 403 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 479 (579)
.....+.|++++|++.|+.+...- +.. ...-..++.+|.+.+++++|...+++.++-+.-.|++. |.....++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHH
Confidence 344556777777777777776532 211 22455566677777777777777777776543334332 2222222221
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC
Q 036340 480 HGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533 (579)
Q Consensus 480 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 533 (579)
-...+ ..+..+ ...=...+....|...|+++++..|++.
T Consensus 95 ~~~~~---~~~~~~------------~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDE---GSLQSF------------FRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhh---hHHhhh------------cccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 11111 111111 0001112335688899999999999865
No 235
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.40 E-value=0.14 Score=47.43 Aligned_cols=74 Identities=11% Similarity=0.079 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCChhhHHHHHccCCCC-------CcchHHHHHHHHHh---CCCHHHHHHHHHHhccCCCCCCCchhhHHH
Q 036340 95 NAMISGFLQNGDVANAIEFFDRMPGR-------DSASLSALVSGLIQ---NGELDEAARVLVKCGSRCDGGEDLVRAYNT 164 (579)
Q Consensus 95 ~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 164 (579)
..++-.|-...+++..+++.+.+... .+..-...+-++-+ .|+.++|++++..++.. ...+++.+|..
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~--~~~~~~d~~gL 222 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES--DENPDPDTLGL 222 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc--cCCCChHHHHH
Confidence 34455677888999999999988763 22233345566667 89999999999996655 55677778888
Q ss_pred HHHHHh
Q 036340 165 LIVGYG 170 (579)
Q Consensus 165 l~~~~~ 170 (579)
++..|-
T Consensus 223 ~GRIyK 228 (374)
T PF13281_consen 223 LGRIYK 228 (374)
T ss_pred HHHHHH
Confidence 887764
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.37 E-value=0.64 Score=40.99 Aligned_cols=219 Identities=15% Similarity=0.076 Sum_probs=92.0
Q ss_pred CCchHHHHHHHHHHHcCCCC-ChhhHHHHHHhccCCCchhhHHHHHHHHhh--cCCCCchHHHHHHHHhhhcCCHHHHHH
Q 036340 309 KDYEGAIKLFIQMQVEGEKP-DRHTFSSILSMSSGIVDLHLGMQIHQMVTK--TVIPDVPINNALITMYARCGAIVEARI 385 (579)
Q Consensus 309 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~ 385 (579)
+....+...+.......... ...........+...+....+...+..... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444444444443332211 133344444444455555555554444222 333334444444445555555555555
Q ss_pred HHHhcc-CCCCe-eeHHHHHH-HHHhcCChHHHHHHHHHhHhCCCCC----ChhhHHHHHHHhcccCcHHHHHHHHHHhH
Q 036340 386 IFEEMK-LLKNV-VSWNAMIG-GCASHGFATEALELFKSMRSFKVLP----TYITFISVLSACAHAGLVEEGRQHFKSMV 458 (579)
Q Consensus 386 ~~~~~~-~~~~~-~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 458 (579)
.+.... ..++. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 555443 11111 11222222 44555555555555555533 222 11122222223344455555555555554
Q ss_pred HhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCC
Q 036340 459 NEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPD-KAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531 (579)
Q Consensus 459 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 531 (579)
.. .+. ....+..+...+...++++.|...+... ...|+ ...+......+...+..+.+...+.+.....|.
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 32 111 2334444444555555555555554444 22222 223333333333344455555555555555544
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.37 E-value=0.02 Score=42.94 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=41.5
Q ss_pred hhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC----CCchhhhhhhhhcCCch
Q 036340 477 VGRHGRLEDAMDLIKGM-PFE-PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS----TPYVLLYNMYADVGRWD 550 (579)
Q Consensus 477 ~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~ 550 (579)
+...|+.+.|++.|.+. ..- .....||.-..++.-.|+.++|+.-+++++++..+.. .+|..-+.+|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 34455555555555443 222 2444555555555555555555555555555432221 12344444555555555
Q ss_pred HHHHHHHHHHhCC
Q 036340 551 DANEVRLLMKSNN 563 (579)
Q Consensus 551 ~A~~~~~~~~~~~ 563 (579)
.|..-|+...+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 5555555444433
No 238
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.26 E-value=0.13 Score=38.90 Aligned_cols=141 Identities=15% Similarity=0.107 Sum_probs=83.3
Q ss_pred HHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHH
Q 036340 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485 (579)
Q Consensus 406 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 485 (579)
+.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+.+. .+|+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 34468888999998888753 234455555544444455555666666654332222 2333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCC
Q 036340 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565 (579)
Q Consensus 486 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (579)
....+-.++ .+...+...+..+..+|.-+.-.+++..+.+.+..+|..+..++.+|.+.|+..++.++++++-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 333333332 233445556677778888888888888888666666788999999999999999999999999999874
No 239
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.25 E-value=0.32 Score=41.97 Aligned_cols=64 Identities=20% Similarity=0.133 Sum_probs=54.9
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
..+..-+....+.|++++|.+.|+.+....+..+-...+...++.++.+.++++.|+..+++..
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi 98 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI 98 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4455566667789999999999999998888888888888899999999999999999999887
No 240
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.24 E-value=0.012 Score=33.09 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC
Q 036340 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 532 (579)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677788888888999999999888888875
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=96.17 E-value=0.13 Score=48.51 Aligned_cols=141 Identities=13% Similarity=0.049 Sum_probs=91.5
Q ss_pred CHHHHHHHHHhcc----CCCC-eeeHHHHHHHHHhc---------CChHHHHHHHHHhHhCCCCCChhhHHHHHHHhccc
Q 036340 379 AIVEARIIFEEMK----LLKN-VVSWNAMIGGCASH---------GFATEALELFKSMRSFKVLPTYITFISVLSACAHA 444 (579)
Q Consensus 379 ~~~~A~~~~~~~~----~~~~-~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 444 (579)
..+.|..+|.+.. ..|+ ...|..+..++... .+..+|.++.++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4567788888764 3333 33455555444321 23556777888877643 33555777777777778
Q ss_pred CcHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHhhccCChHHHHHHHHh-CCCCCCHH---HHHHHHHHHhhcCCHHHHH
Q 036340 445 GLVEEGRQHFKSMVNEYGIEPR-IEHFASLVDIVGRHGRLEDAMDLIKG-MPFEPDKA---VWGALLGACRVHNNVELAQ 519 (579)
Q Consensus 445 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~~~A~ 519 (579)
++++.|...|++.. .+.|+ ...+...+....-.|+.++|.+.+++ +...|... .....+..|+.. -.++|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999999886 56775 45666677777789999999999988 46666433 333333455544 456677
Q ss_pred HHHHH
Q 036340 520 VAAEA 524 (579)
Q Consensus 520 ~~~~~ 524 (579)
.+|-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 76654
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.15 E-value=0.0097 Score=47.94 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHH-----hCCCCCCCc
Q 036340 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK-----SNNIKKPTG 569 (579)
Q Consensus 501 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 569 (579)
....++..+...|++++|+..+++++..+|.+...|..++.+|...|+..+|.++++++. +.|+.|.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 455666777889999999999999999999999999999999999999999999988762 567776654
No 243
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.14 E-value=0.0099 Score=33.41 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC
Q 036340 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 532 (579)
.+|..++.++...|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467788888889999999999999999988863
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.26 Score=43.39 Aligned_cols=157 Identities=17% Similarity=0.137 Sum_probs=95.3
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHHHcCCCCChHHHHHHHhhCC---CCCcchHHHHHHHHHccCCHHHHHHHhhcCCC-
Q 036340 13 KARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP---ERDCVTWNTVISGYAKTGEMEEALRLFNSMPA- 88 (579)
Q Consensus 13 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 88 (579)
..++++++...+....-..-.......++ +.+|..+|.... +.+....-.++.+|...|+.+.|..++..++.
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~---~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAED---FGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccc---hhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 34455555555422222223333445555 888888888776 34556677888888899999999999998872
Q ss_pred Cch---hhHHHHHHHHHhcCChhhHHHHHccCCC-C-CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHH
Q 036340 89 RNV---VSWNAMISGFLQNGDVANAIEFFDRMPG-R-DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN 163 (579)
Q Consensus 89 ~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 163 (579)
... .....-+..+.+..+..+...+-++.-. | |...-..+...+...|+.+.|.+.+-.++++..+. .+..+-.
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk 276 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARK 276 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHH
Confidence 111 1222334455555555544444444322 3 55666678888888999999988887777654333 3344555
Q ss_pred HHHHHHhhCC
Q 036340 164 TLIVGYGQRG 173 (579)
Q Consensus 164 ~l~~~~~~~g 173 (579)
.++..+.-.|
T Consensus 277 ~lle~f~~~g 286 (304)
T COG3118 277 TLLELFEAFG 286 (304)
T ss_pred HHHHHHHhcC
Confidence 6666665555
No 245
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.10 E-value=0.024 Score=53.09 Aligned_cols=58 Identities=10% Similarity=0.161 Sum_probs=36.0
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcc----hhHHHHHHhhccCChHHHHHHHHhC
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE----HFASLVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 493 (579)
.++.+..+|...|++++|+..|++.+. +.|+.. .|..++.+|...|+.++|+..++++
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566666666666666666666666653 345432 3566666666666666666666655
No 246
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.06 E-value=0.53 Score=45.52 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=106.5
Q ss_pred hhhcCCCHHHHHHHhc--cCCC-CchhHHHHHHHHHHHcCCCCChHHHHHHHhhCCCCCcchHHHHHHHHHccCCHHHHH
Q 036340 4 GYVKRREMAKARKLFD--EMPQ-RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEAL 80 (579)
Q Consensus 4 ~~~~~~~~~~A~~~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 80 (579)
..+-+|+++++.+..+ ++.. -.....+.++.-+.+.|. ++.|+++- .|+. .--....+.|+++.|.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~---~e~AL~~~-----~D~~---~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGY---PELALQFV-----TDPD---HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT----HHHHHHHS-----S-HH---HHHHHHHHCT-HHHHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCC---HHHHHhhc-----CChH---HHhHHHHhcCCHHHHH
Confidence 3455778888655554 2221 124446677777777777 89998873 3332 3445556889999999
Q ss_pred HHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchh
Q 036340 81 RLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVR 160 (579)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 160 (579)
++.++. +++..|..|.....++|+++-|++.|++.. .+..++-.|...|+.+.-.++.+.+..++
T Consensus 339 ~~a~~~--~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------- 403 (443)
T PF04053_consen 339 EIAKEL--DDPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG-------- 403 (443)
T ss_dssp HHCCCC--STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------
T ss_pred HHHHhc--CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc--------
Confidence 988887 477799999999999999999999999864 46777778888999888888887776642
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 161 AYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 161 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
-++....++.-.|+.++..+++.+..
T Consensus 404 ~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 25555666677789999988887764
No 247
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.06 E-value=0.092 Score=38.61 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCC-CCChhhHHHHHHhccCCCc--------hhhHHHHHHH-HhhcCCCCchHHHH
Q 036340 300 SMIAGCETNKDYEGAIKLFIQMQVEGE-KPDRHTFSSILSMSSGIVD--------LHLGMQIHQM-VTKTVIPDVPINNA 369 (579)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~-~~~~~~~~~~~~~~ 369 (579)
..|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+..+..- +.....+++. ...+..|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555666888888888888888888 7888888888876543321 1122223333 44445555555555
Q ss_pred HHHHh
Q 036340 370 LITMY 374 (579)
Q Consensus 370 l~~~~ 374 (579)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 54444
No 248
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.03 E-value=0.39 Score=41.48 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=30.1
Q ss_pred HHHHhcCChhhHHHHHccCCCC------CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCC
Q 036340 99 SGFLQNGDVANAIEFFDRMPGR------DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE 156 (579)
Q Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 156 (579)
..-.+.|++++|.+.|+.+... ...+...++.++.+.+++++|+..+++.....|..+
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 3344555555555555555432 112333445555566666666666666666543333
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.02 E-value=0.061 Score=48.23 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=10.7
Q ss_pred HhCCCchHHHHHHHHHHH
Q 036340 306 ETNKDYEGAIKLFIQMQV 323 (579)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~ 323 (579)
....+.++|+..+.+-..
T Consensus 17 y~s~~~~~al~~w~~~L~ 34 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLE 34 (518)
T ss_pred hcCchHHHHHHHHHHHHH
Confidence 345666677766665543
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.00 E-value=0.2 Score=48.32 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=104.2
Q ss_pred HHHHcCCCCChHHHHHHHh--hCC-CCCcchHHHHHHHHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHH
Q 036340 35 GYISSRGSGFLEEARYLFD--IMP-ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAI 111 (579)
Q Consensus 35 ~~~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 111 (579)
.....++ ++++.+..+ ++. .-+..-.+.++..+.+.|..+.|+++...- ..-.....+.|+++.|.
T Consensus 270 ~av~~~d---~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 270 TAVLRGD---FEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHTT----HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHH
T ss_pred HHHHcCC---hhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHH
Confidence 3344555 888555544 222 122455788889999999999999876532 33456778899999999
Q ss_pred HHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCC
Q 036340 112 EFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR 191 (579)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 191 (579)
++.++.. ++..|..|.....++|+++-|++.|.+... +..++-.|...|+.+.-.++.+...
T Consensus 339 ~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------~~~L~lLy~~~g~~~~L~kl~~~a~----- 400 (443)
T PF04053_consen 339 EIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----------FSGLLLLYSSTGDREKLSKLAKIAE----- 400 (443)
T ss_dssp HHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHH-----
T ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------ccccHHHHHHhCCHHHHHHHHHHHH-----
Confidence 9988765 566899999999999999999999998543 6677778888898888777776664
Q ss_pred CCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036340 192 GEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228 (579)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (579)
..| -++....++.-.|+.++..+++.+.
T Consensus 401 ---~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ---ERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ---HTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ---Hcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 111 2555666677778888887777653
No 251
>PRK15331 chaperone protein SicA; Provisional
Probab=95.98 E-value=0.15 Score=40.82 Aligned_cols=84 Identities=7% Similarity=-0.051 Sum_probs=44.6
Q ss_pred HHhcCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChH
Q 036340 406 CASHGFATEALELFKSMRSFKVLP-TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484 (579)
Q Consensus 406 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 484 (579)
+...|++++|..+|+-+.-. .| +..-+..|..++-..+++++|+..|.....- . ..|+..+...+.++...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHH
Confidence 34556666666666665532 23 2223344444555566666666666554321 1 123444445566666666666
Q ss_pred HHHHHHHhC
Q 036340 485 DAMDLIKGM 493 (579)
Q Consensus 485 ~A~~~~~~~ 493 (579)
.|+..|...
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 666666555
No 252
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.97 E-value=2.3 Score=43.62 Aligned_cols=306 Identities=9% Similarity=-0.015 Sum_probs=142.1
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHh--cCChHHHHHHhhcCC-CCCh-hhHHHHHHHHHhcCCHHHHHHH
Q 036340 211 CYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIH--VLDMEEASNLFVKMP-HPDT-LTWNAMVSGYAQIGNLELALDF 286 (579)
Q Consensus 211 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~ 286 (579)
...+.|++..+.++...+.+.-...|......... ....++....+++-. .|-. ..-...+..+.+.+++.....+
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~ 121 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF 121 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh
Confidence 34577888888887777753322222222222222 234566666666543 1222 2223334456677888888874
Q ss_pred HccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH---Hhhc----
Q 036340 287 FKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM---VTKT---- 359 (579)
Q Consensus 287 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~---- 359 (579)
+..- ..+...-.....+....|+.++|....+.+-..|.. .......++..+...|........-+. ...+
T Consensus 122 ~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~l 199 (644)
T PRK11619 122 SPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGL 199 (644)
T ss_pred cCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4332 334444455666777788888787777777655533 344555666665544444333222111 1111
Q ss_pred -------CCCCch-HHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHH--hcCChHHHHHHHHHhHhCC-CC
Q 036340 360 -------VIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCA--SHGFATEALELFKSMRSFK-VL 428 (579)
Q Consensus 360 -------~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~-~~ 428 (579)
.+++.. ....++..+ .+...+...+... .++...-..++.++. ...+.+.|...+....... ..
T Consensus 200 A~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~~--~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~ 274 (644)
T PRK11619 200 VTYLAKQLPADYQTIASALIKLQ---NDPNTVETFARTT--GPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLN 274 (644)
T ss_pred HHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhcc--CCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCC
Confidence 111100 111111111 1122222222211 112111111222222 2345567777777654322 22
Q ss_pred CChh--hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCC--CCCHHHHHH
Q 036340 429 PTYI--TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF--EPDKAVWGA 504 (579)
Q Consensus 429 p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 504 (579)
+... ....+.......+..+++...+...... ..+......-+..-.+.++++.+...+..|+. .....-.--
T Consensus 275 ~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW 351 (644)
T PRK11619 275 EDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYW 351 (644)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHH
Confidence 2221 2333333223322244555555543211 12334444444444577777777777777631 112233334
Q ss_pred HHHHHhhcCCHHHHHHHHHHHh
Q 036340 505 LLGACRVHNNVELAQVAAEALM 526 (579)
Q Consensus 505 l~~~~~~~~~~~~A~~~~~~~~ 526 (579)
+++++...|+.++|...|+++.
T Consensus 352 ~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 352 QADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 4555555677777777777764
No 253
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.84 E-value=0.016 Score=47.19 Aligned_cols=103 Identities=10% Similarity=0.074 Sum_probs=67.5
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhhCCCCC---cchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc
Q 036340 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPR---IEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVH 512 (579)
Q Consensus 438 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 512 (579)
..-++..|++++|..-|..++....-.+. ..+|..-+.++.+.+.++.|+.-..+. .+.| ....+..-..+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 44677888999998888888754211111 234555566777888888888777665 4444 233444445567777
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCchhhh
Q 036340 513 NNVELAQVAAEALMKVEPENSTPYVLLY 540 (579)
Q Consensus 513 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 540 (579)
..+++|++-|+++++.+|....+....+
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 8888888888888888888654444333
No 254
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=95.81 E-value=0.089 Score=43.98 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=70.1
Q ss_pred CCCeeeHHHHHHHHHh-----cCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhccc----------------CcHHHHH
Q 036340 393 LKNVVSWNAMIGGCAS-----HGFATEALELFKSMRSFKVLPTYITFISVLSACAHA----------------GLVEEGR 451 (579)
Q Consensus 393 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~ 451 (579)
..+..+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4566667777777764 467777788888999999999999999999987541 2345688
Q ss_pred HHHHHhHHhhCCCCCcchhHHHHHHhhccCCh
Q 036340 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRL 483 (579)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 483 (579)
+++++|.. +|+-||.+++..+++++.+.+..
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 99999955 49999999999999998777654
No 255
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.62 E-value=0.023 Score=45.71 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchH
Q 036340 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203 (579)
Q Consensus 124 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (579)
....++..+...|++++|...++.+.. ..|.+...|..++.++...|+...|.++|+.+...-. .+.|+.|+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~---~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~---~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA---LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR---EELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH---HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH---HHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH---HHhCcCcCHH
Confidence 344566777889999999999999998 5677888999999999999999999999988752111 1457788776
Q ss_pred HHH
Q 036340 204 SWN 206 (579)
Q Consensus 204 ~~~ 206 (579)
+-.
T Consensus 138 ~~~ 140 (146)
T PF03704_consen 138 TRA 140 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.61 E-value=1.4 Score=38.64 Aligned_cols=196 Identities=19% Similarity=0.180 Sum_probs=124.8
Q ss_pred chHHHHHHHHhhhcCCHHHHHHHHHhcc----CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 036340 364 VPINNALITMYARCGAIVEARIIFEEMK----LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439 (579)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 439 (579)
..........+...+.+..+...+.... .......+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4555666677777777777777766653 123334455566666677777888888887775432221 22222223
Q ss_pred -HhcccCcHHHHHHHHHHhHHhhCCCC----CcchhHHHHHHhhccCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHhh
Q 036340 440 -ACAHAGLVEEGRQHFKSMVNEYGIEP----RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPD--KAVWGALLGACRV 511 (579)
Q Consensus 440 -~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~ 511 (579)
.+...|+++.+...+..... ..| ....+......+...++.+++...+.+. ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 57778888888888887743 222 2333344444466777888888877776 22333 5566667777777
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 512 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
.++++.|...+..+....|.....+..++..+...|.++++...+.+..+..
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7788888888888888777754556666666666667788877777665433
No 257
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.61 E-value=0.11 Score=40.05 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=32.4
Q ss_pred CCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHH
Q 036340 426 KVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475 (579)
Q Consensus 426 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 475 (579)
...|+..+..+++.+|+..|++..|.++.+...+.++++-+...|..|.+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34566666777777777777777777777777666665555555555544
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.56 E-value=0.035 Score=41.69 Aligned_cols=61 Identities=11% Similarity=-0.066 Sum_probs=54.8
Q ss_pred HHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCCC
Q 036340 507 GACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567 (579)
Q Consensus 507 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 567 (579)
.++...|+.+.|++.|.+++.+-|.++.+|+.-+.++.-+|+.++|+.-+++..+..-+.+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t 111 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT 111 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc
Confidence 4567899999999999999999999999999999999999999999999999876554443
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.55 E-value=0.72 Score=43.77 Aligned_cols=150 Identities=11% Similarity=-0.003 Sum_probs=82.2
Q ss_pred CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC---ChhhHHHHHHHhcccCcHHHHHHHHHHhHHh-hCCCCCcchh
Q 036340 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP---TYITFISVLSACAHAGLVEEGRQHFKSMVNE-YGIEPRIEHF 470 (579)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 470 (579)
...+|..++..+.+.|+++.|...+.++......+ .+.....-+..+-..|+..+|+..++..+.. .....+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34567788888888999999998888887543111 2223333344555678888888888877762 1111111111
Q ss_pred HHHHHHhhccCChHHHHHH-HHhCCCCCCHHHHHHHHHHHhhc------CCHHHHHHHHHHHhhcCCCCCCCchhhhhhh
Q 036340 471 ASLVDIVGRHGRLEDAMDL-IKGMPFEPDKAVWGALLGACRVH------NNVELAQVAAEALMKVEPENSTPYVLLYNMY 543 (579)
Q Consensus 471 ~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 543 (579)
..+...+.. ..+..... ........-...+..+...+... ++.+++...|.++.+..|....+|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111100 00000000 00000000122333344444344 7889999999999999999888888877766
Q ss_pred hhc
Q 036340 544 ADV 546 (579)
Q Consensus 544 ~~~ 546 (579)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 544
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.47 E-value=0.038 Score=33.27 Aligned_cols=41 Identities=29% Similarity=0.276 Sum_probs=31.5
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHH
Q 036340 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166 (579)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 166 (579)
.++..+...|...|++++|+++|+++++ ..|.+..++..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~---~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA---LDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCcCCHHHHHHhh
Confidence 4567788888899999999999999888 4566666666554
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.47 E-value=0.3 Score=47.87 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=68.4
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCcchhH-HHHHHhhccCChHHHHHHHHhCC-----CCC-CHHHHHHHHHHHhhcCCHH
Q 036340 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFA-SLVDIVGRHGRLEDAMDLIKGMP-----FEP-DKAVWGALLGACRVHNNVE 516 (579)
Q Consensus 444 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~ 516 (579)
....+.|.++++.+.++ -|+...|. .-++.+...|+.++|++.+++.- .++ ....+-.++..+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 44566777777777644 35444332 34455666777777777777541 111 2234444556666777888
Q ss_pred HHHHHHHHHhhcCCCCCCCchhh-hhhhhhcCCc-------hHHHHHHHHHH
Q 036340 517 LAQVAAEALMKVEPENSTPYVLL-YNMYADVGRW-------DDANEVRLLMK 560 (579)
Q Consensus 517 ~A~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~~~ 560 (579)
+|...+.++.+.+.-+...|..+ +-++...|+. ++|.+++++..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 88888888877655544433333 3445566777 77777777664
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.41 E-value=0.36 Score=47.34 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=13.5
Q ss_pred hHHHHHHhccCCCchhhHHHHHHH
Q 036340 332 TFSSILSMSSGIVDLHLGMQIHQM 355 (579)
Q Consensus 332 ~~~~l~~~~~~~~~~~~a~~~~~~ 355 (579)
.+..++....-.||-+.+.+.+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~ 213 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWE 213 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHH
Confidence 344455555556666666665555
No 263
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.40 E-value=3.7 Score=41.93 Aligned_cols=178 Identities=12% Similarity=0.103 Sum_probs=113.5
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcch
Q 036340 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202 (579)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 202 (579)
.....-+..+.+...++-|+.+.+.-.. +..........-+..+.+.|++++|...|-+.+. -+.|.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~~---d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~---------~le~s- 401 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQHL---DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG---------FLEPS- 401 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc---------cCChH-
Confidence 3455677888888889999888776322 1122223455556667889999999999888761 12332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHhhcCCCCCh-hhHHHHHHHHHhcC
Q 036340 203 VSWNSMIMCYAKAGDVVSAREIFEQMLER---DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDT-LTWNAMVSGYAQIG 278 (579)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~g 278 (579)
.++.-|........-..+++.+.+. +...-..|+.+|.+.++.++-.+..+....... .-....+..+.+.+
T Consensus 402 ----~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 ----EVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSN 477 (933)
T ss_pred ----HHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhC
Confidence 2455555555566666666666554 455667789999999999988888877641111 12344556666666
Q ss_pred CHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHH
Q 036340 279 NLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM 321 (579)
Q Consensus 279 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (579)
-.++|..+-.+... +... +--.+-..+++++|++.+..+
T Consensus 478 yl~~a~~LA~k~~~-he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 67777666555433 2222 223344568899999988765
No 264
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=0.63 Score=39.39 Aligned_cols=128 Identities=14% Similarity=0.176 Sum_probs=57.3
Q ss_pred hcCChHHHHHHHHHhHhCCCCCChh-----hHHHHHHHhccc-CcHHHHHHHHHHhHHhhCCCCC----cchhHHHHHHh
Q 036340 408 SHGFATEALELFKSMRSFKVLPTYI-----TFISVLSACAHA-GLVEEGRQHFKSMVNEYGIEPR----IEHFASLVDIV 477 (579)
Q Consensus 408 ~~~~~~~A~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~ 477 (579)
+.+++++|...++..++--...... -...+...|... .++++|+..|+..-.=+..... ..++...+..-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 4447777777776655311000001 112333344333 5666666666655332211111 12223333334
Q ss_pred hccCChHHHHHHHHhCC---CCCCHHHHHH---HH--HHH-hhcCCHHHHHHHHHHHhhcCCCCCCC
Q 036340 478 GRHGRLEDAMDLIKGMP---FEPDKAVWGA---LL--GAC-RVHNNVELAQVAAEALMKVEPENSTP 535 (579)
Q Consensus 478 ~~~g~~~~A~~~~~~~~---~~~~~~~~~~---l~--~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~ 535 (579)
...+++.+|+++|++.. ...+..-|.. ++ ..| ....|.-.+...+++-.+++|.-...
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 45666667777766651 1111111111 11 112 22355555666666666666665544
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.38 E-value=0.26 Score=46.69 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=28.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHH
Q 036340 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459 (579)
Q Consensus 402 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 459 (579)
++.---+..+++.-++.-++..+ +.|+..+...++ +-.......++.+++++.++
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvk 228 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVK 228 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHH
Confidence 33333445556666666666663 456544222222 22334456666666666554
No 266
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.20 E-value=0.31 Score=40.57 Aligned_cols=181 Identities=19% Similarity=0.184 Sum_probs=102.2
Q ss_pred cCCHHHHHHHHHhcc-CCCC-eeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHH
Q 036340 377 CGAIVEARIIFEEMK-LLKN-VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQH 453 (579)
Q Consensus 377 ~~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~ 453 (579)
.|-+.-|.--|.+.. +.|+ +.+||-+.--+...|+++.|.+.|+...+. .|... +...-.-++.-.|++.-|.+-
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHH
Confidence 344444444444332 3454 456888888888899999999999998854 45322 332222345567899888876
Q ss_pred HHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC-
Q 036340 454 FKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN- 532 (579)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~- 532 (579)
+...-+...-.|-...|..+. .+.-++.+|..-+.+--...|..-|...+..+.- |... ....++++.....++
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNT 230 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchH
Confidence 665544322222223333322 2445667776544332113344445444433321 2111 123344444333332
Q ss_pred ------CCCchhhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 533 ------STPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 533 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
..+|..|++-+...|+.++|..+++-.+..++
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 24588899999999999999999987766554
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.10 E-value=2.5 Score=38.35 Aligned_cols=19 Identities=16% Similarity=-0.099 Sum_probs=14.1
Q ss_pred HHhhcCCHHHHHHHHHHHh
Q 036340 508 ACRVHNNVELAQVAAEALM 526 (579)
Q Consensus 508 ~~~~~~~~~~A~~~~~~~~ 526 (579)
.+.+.++++.|...|+-++
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3567888888888887654
No 268
>PRK09687 putative lyase; Provisional
Probab=95.05 E-value=2.6 Score=38.17 Aligned_cols=135 Identities=9% Similarity=0.032 Sum_probs=70.6
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC-ChHHHHHHhhcCC-CCChhhHHHHHHHHHhc
Q 036340 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVL-DMEEASNLFVKMP-HPDTLTWNAMVSGYAQI 277 (579)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~ 277 (579)
++..+-...+.++.+.++.+....+..-+.++|...-...+.++...+ +...+...+..+. .++..+-...+.++.+.
T Consensus 140 ~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 355555666666666666443333333333445554444555555442 1334444444443 56666777777777777
Q ss_pred CCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHh
Q 036340 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339 (579)
Q Consensus 278 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (579)
|+..-...+.+.+..++ .....+.++...|+. +|+..+..+.+. .||..+-...+.+
T Consensus 220 ~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 220 KDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred CChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 77443333333333333 233455666666664 577777776653 2354444444433
No 269
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.04 E-value=5.9 Score=42.32 Aligned_cols=117 Identities=10% Similarity=0.129 Sum_probs=60.9
Q ss_pred HHHHHHccCCHHHHHHHhhcCC-------CCchhhHHHHHHHHHhc-CChhhHHHHHccCCCCCcc--hHH----HHHHH
Q 036340 66 VISGYAKTGEMEEALRLFNSMP-------ARNVVSWNAMISGFLQN-GDVANAIEFFDRMPGRDSA--SLS----ALVSG 131 (579)
Q Consensus 66 l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~--~~~----~l~~~ 131 (579)
.+.-++.+++|.+|..+.++-. +-++..+..-+.++.+. ++.+--..++..+.+.|.. .|. .-...
T Consensus 683 ~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~ 762 (1265)
T KOG1920|consen 683 KVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQV 762 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhcccccccccee
Confidence 3445567788999988877654 33444455555566655 3344444444444432221 111 11111
Q ss_pred HHhC----CCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCC--CHHHHHHHHcccc
Q 036340 132 LIQN----GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG--RVEEARKLFDKIP 186 (579)
Q Consensus 132 ~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 186 (579)
|... .+.+..-+.++.... ...|+ .....++.+|.+.+ ..+.++....+..
T Consensus 763 ~~~r~~~d~kv~~vc~~vr~~l~---~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 763 YMSRDPYDNKVNSVCDAVRNALE---RRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred EEeccchhhHHHHHHHHHHHHHh---hcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 1111 233344444444444 23443 45567788888877 6777777776664
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.96 E-value=1.2 Score=42.48 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=69.8
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCC--CCCH--HHHHHHHHH
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF--EPDK--AVWGALLGA 508 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~~l~~~ 508 (579)
+-..+..++-+.|+.++|++.+++++++........+...|++++...+.+.++..++.+... -|.. ..|...+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566677889999999999999987643333456778899999999999999999998842 2333 344443322
Q ss_pred HhhcCC---------------HHHHHHHHHHHhhcCCCCCC
Q 036340 509 CRVHNN---------------VELAQVAAEALMKVEPENST 534 (579)
Q Consensus 509 ~~~~~~---------------~~~A~~~~~~~~~~~p~~~~ 534 (579)
....+| -..|.+.+.++.+.+|--+.
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 222222 13466788888888876543
No 271
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.95 E-value=2.5 Score=44.94 Aligned_cols=110 Identities=18% Similarity=0.180 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHH
Q 036340 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204 (579)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (579)
|...+..+...+.+++|.-.|+..-+ ...-+.+|...|+|.+|..+..++.. +-..-..+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----------lekAl~a~~~~~dWr~~l~~a~ql~~---------~~de~~~~ 1001 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK-----------LEKALKAYKECGDWREALSLAAQLSE---------GKDELVIL 1001 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc-----------HHHHHHHHHHhccHHHHHHHHHhhcC---------CHHHHHHH
Confidence 33444444555555555555555432 12234455556666666666655530 00000111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhc
Q 036340 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK 258 (579)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (579)
-..|+.-+...++.-+|-++..+....-.. .+..+++...+++|+++-..
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~sd~~~----av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLSDPEE----AVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhcCHHH----HHHHHhhHhHHHHHHHHHHh
Confidence 134555555556555555555554433222 22233344445555544443
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.71 Score=41.31 Aligned_cols=118 Identities=14% Similarity=-0.022 Sum_probs=67.7
Q ss_pred HhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHH
Q 036340 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212 (579)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 212 (579)
--.|+..+|-..++++++ ..|.+..++...=.+|.-.|+.+.-...++++...= ..++|-...+...+.-++
T Consensus 114 ~~~g~~h~a~~~wdklL~---d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-----n~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD---DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-----NADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hccccccHHHHHHHHHHH---hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-----CCCCcHHHHHHHHHHhhH
Confidence 346777777777777777 556666667666677777777777777777765110 111121222222333445
Q ss_pred HhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHhhc
Q 036340 213 AKAGDVVSAREIFEQMLER---DTFSWNTMISGYIHVLDMEEASNLFVK 258 (579)
Q Consensus 213 ~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (579)
...|-+++|++.-++.++- |..+-.+....+...|++.++.+...+
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 5677777777777777654 333334444444445555555544443
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.89 E-value=0.047 Score=30.54 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhhcCCC
Q 036340 501 VWGALLGACRVHNNVELAQVAAEALMKVEPE 531 (579)
Q Consensus 501 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 531 (579)
+|..+...+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888888874
No 274
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.84 E-value=2.4 Score=36.81 Aligned_cols=239 Identities=15% Similarity=0.210 Sum_probs=128.5
Q ss_pred CCHHHHHHHHccCCC--C-----ChhhHHHHHHHHHhCCCchHHHHHHHHHHH---cCC--CCChhhHHHHHHhccCCCc
Q 036340 278 GNLELALDFFKRMPQ--K-----NLVSWNSMIAGCETNKDYEGAIKLFIQMQV---EGE--KPDRHTFSSILSMSSGIVD 345 (579)
Q Consensus 278 g~~~~A~~~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~~~ 345 (579)
.++++|+.-|.++.+ + ...+...++..+.+.|++++.+..|.++.. +.+ .-+..+.+.++.-.....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456667666666553 1 122445566777777777777777777642 111 1234455666665555566
Q ss_pred hhhHHHHHHH-Hh--h---cCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CC-C----C-------eeeHHHHHHH
Q 036340 346 LHLGMQIHQM-VT--K---TVIPDVPINNALITMYARCGAIVEARIIFEEMK--LL-K----N-------VVSWNAMIGG 405 (579)
Q Consensus 346 ~~~a~~~~~~-~~--~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~----~-------~~~~~~l~~~ 405 (579)
.+.-..+++. .. + ....--.+-..+...|...+.+.+-.++++++. .+ . | ...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 5555555544 11 1 111111233567778888888888888888774 00 0 1 2246666777
Q ss_pred HHhcCChHHHHHHHHHhHhCC-CCCChhhHHHHHHHh-----cccCcHHHHHHHHHHhHHhhCC--CCCc---chhHHHH
Q 036340 406 CASHGFATEALELFKSMRSFK-VLPTYITFISVLSAC-----AHAGLVEEGRQHFKSMVNEYGI--EPRI---EHFASLV 474 (579)
Q Consensus 406 ~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~---~~~~~l~ 474 (579)
|....+-.+-..++++...-. --|.+... .+++-| .+.|.+++|-.=|-++.+.+.- .|.. --|..|+
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 877777777777777765322 22433333 334433 4678888876544444443221 2221 2245566
Q ss_pred HHhhccCC----hHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 036340 475 DIVGRHGR----LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAA 522 (579)
Q Consensus 475 ~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 522 (579)
.++.+.|- .++|. -....|.......++.+| +.++..+-++++
T Consensus 280 NMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aY-Q~NdI~eFE~Il 326 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAY-QNNDIIEFERIL 326 (440)
T ss_pred HHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHH-hcccHHHHHHHH
Confidence 66666651 12221 012345555667777777 344544443333
No 275
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=1.9 Score=36.63 Aligned_cols=78 Identities=10% Similarity=0.139 Sum_probs=46.9
Q ss_pred HHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhC-CCHHHHHHHHHHhccCCCCCCCch---hhHHHHHHHHhhCC
Q 036340 98 ISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQN-GELDEAARVLVKCGSRCDGGEDLV---RAYNTLIVGYGQRG 173 (579)
Q Consensus 98 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g 173 (579)
|..|...|++..|-.... .+...|-.. .+++.|+..|+.+-+-..+...+. ..+..+...-...+
T Consensus 100 ieIyt~~Grf~~aAk~~~-----------~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~le 168 (288)
T KOG1586|consen 100 IEIYTDMGRFTMAAKHHI-----------EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLE 168 (288)
T ss_pred HHHHHhhhHHHHHHhhhh-----------hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHH
Confidence 455666666655544322 344444433 667777777777654332322222 23445555566788
Q ss_pred CHHHHHHHHcccc
Q 036340 174 RVEEARKLFDKIP 186 (579)
Q Consensus 174 ~~~~A~~~~~~~~ 186 (579)
++.+|+++|+++.
T Consensus 169 qY~~Ai~iyeqva 181 (288)
T KOG1586|consen 169 QYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999986
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=1.5 Score=37.58 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC-------CChhhHHHHHHHHHhCCCchHHHHHH
Q 036340 267 WNAMVSGYAQIGNLELALDFFKRMPQ-------KNLVSWNSMIAGCETNKDYEGAIKLF 318 (579)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (579)
|...+-.+.-..++..|...++.-.+ .+..+...|+.+| ..||.+.+..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 33444445555666777777666332 2344555566555 345555544443
No 277
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.75 E-value=0.35 Score=37.29 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=42.1
Q ss_pred CCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHh
Q 036340 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214 (579)
Q Consensus 154 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 214 (579)
...|+.....+++.+|+..|++..|.++++.... ..+++-+...|..|++-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~-------~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR-------KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHHHH
Confidence 4567788899999999999999999999988863 33566677888888875443
No 278
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=0.29 Score=41.62 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=83.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHH
Q 036340 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204 (579)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (579)
|..-..+|....++++|...+.++.+ +...+...| .....++.|.-+.+++. .++.-...
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~---~yEnnrslf-------hAAKayEqaamLake~~----------klsEvvdl 93 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK---GYENNRSLF-------HAAKAYEQAAMLAKELS----------KLSEVVDL 93 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH---HHHhcccHH-------HHHHHHHHHHHHHHHHH----------HhHHHHHH
Confidence 44455666677778888777777664 222222111 12233445555555553 11222334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCC---------CCChhhHHHHHHHHH
Q 036340 205 WNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMP---------HPDTLTWNAMVSGYA 275 (579)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~l~~~~~ 275 (579)
++-....|..+|.++.|-..+++.-+ ....-++++|+++|++.. +.-...+..+.+.+.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 45555667777777666555554311 122234445555554433 011123444556666
Q ss_pred hcCCHHHHHHHHccCCC--------CCh-hhHHHHHHHHHhCCCchHHHHHHHHHHH
Q 036340 276 QIGNLELALDFFKRMPQ--------KNL-VSWNSMIAGCETNKDYEGAIKLFIQMQV 323 (579)
Q Consensus 276 ~~g~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (579)
+..++++|-..|.+-.. ++. ..|-..|-.+.-..|+..|...++.-.+
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 66666666655554332 111 1244445555556677777777766433
No 279
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.54 E-value=1.9 Score=34.24 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=80.6
Q ss_pred HHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHH
Q 036340 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMIS 241 (579)
Q Consensus 162 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 241 (579)
...++..+...+.......+++.+. ..+ ..+...++.++..|++.+ ..+..+.+.. ..+......++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~--------~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~ 77 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESAL--------KLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGK 77 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH--------ccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHH
Confidence 3467777777888999999999987 333 356778889999998764 4455555552 234455556777
Q ss_pred HHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHccCCCCChhhHHHHHHHHH
Q 036340 242 GYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQI-GNLELALDFFKRMPQKNLVSWNSMIAGCE 306 (579)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 306 (579)
.|.+.+-++++.-++.++.. +...+..+... ++++.|.+++.+. .++..|..++..+.
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 77777777777777766531 11222333333 6677777777653 34556666665554
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.51 E-value=2.1 Score=34.54 Aligned_cols=119 Identities=12% Similarity=0.063 Sum_probs=73.2
Q ss_pred HHhcCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhH-----HHHHHhhc
Q 036340 406 CASHGFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA-----SLVDIVGR 479 (579)
Q Consensus 406 ~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~ 479 (579)
+.+.+..++|+.-|..+.+.|...=+. ..........+.|+...|...|.++-.. .|.+.... .-+..+..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 345666788888888887766433222 2222233456778888888888887644 23222222 22334667
Q ss_pred cCChHHHHHHHHhCCC--CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhh
Q 036340 480 HGRLEDAMDLIKGMPF--EP-DKAVWGALLGACRVHNNVELAQVAAEALMK 527 (579)
Q Consensus 480 ~g~~~~A~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 527 (579)
.|.+++....++-+.. .| ....-..|.-+-.+.|++.+|...|.++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888888777777632 23 233445566666788888888888887765
No 281
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.49 E-value=3.8 Score=37.43 Aligned_cols=123 Identities=10% Similarity=0.086 Sum_probs=62.6
Q ss_pred HHHhccCCCchhhHHHHHHH-Hhhc-----CCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-----C-CCCeee-H---
Q 036340 336 ILSMSSGIVDLHLGMQIHQM-VTKT-----VIPDVPINNALITMYARCGAIVEARIIFEEMK-----L-LKNVVS-W--- 399 (579)
Q Consensus 336 l~~~~~~~~~~~~a~~~~~~-~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~-~~~~~~-~--- 399 (579)
+..++...+.++++.+.|+. .+.. ......++..|...|.+..++++|.-+....- . ..|... |
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 33444445555555555444 1111 11133456677777777777777665554431 0 111111 1
Q ss_pred --HHHHHHHHhcCChHHHHHHHHHhH----hCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhH
Q 036340 400 --NAMIGGCASHGFATEALELFKSMR----SFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMV 458 (579)
Q Consensus 400 --~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 458 (579)
..+..++...|..-.|.+.-++.. ..|-+|... ....+.+.|...|+.+.|..-|+.+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 123344555666655555554433 334333322 45556667777777777777776654
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.33 E-value=0.46 Score=38.06 Aligned_cols=127 Identities=11% Similarity=0.092 Sum_probs=88.0
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHhhccCChHHHHHHHHhCC-CCCCHHHHHHHH----
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR-IEHFASLVDIVGRHGRLEDAMDLIKGMP-FEPDKAVWGALL---- 506 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~---- 506 (579)
.|..-+. +.+.+..++|+.-|..+.+. |...- +-.....+......|+...|...|.+.. ..|.+.....+.
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 4444333 45678889999999988654 43321 1122234456778999999999999983 333333332222
Q ss_pred -HHHhhcCCHHHHHHHHHHHh-hcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHh
Q 036340 507 -GACRVHNNVELAQVAAEALM-KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561 (579)
Q Consensus 507 -~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (579)
..+...|-++....-.+-+- ..+|-...+-..|+.+-.+.|++.+|...|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 33567888888777766654 45676667788999999999999999999999875
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.33 E-value=0.07 Score=30.37 Aligned_cols=25 Identities=20% Similarity=0.046 Sum_probs=14.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHh
Q 036340 502 WGALLGACRVHNNVELAQVAAEALM 526 (579)
Q Consensus 502 ~~~l~~~~~~~~~~~~A~~~~~~~~ 526 (579)
|..+..+|.+.|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666644
No 284
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.32 E-value=1.1 Score=37.00 Aligned_cols=93 Identities=11% Similarity=0.064 Sum_probs=64.5
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhhCCCCCc----chhHHHHHHhhccCChHHHHHHHHhCCCCC-CHHHHHHHHHHHhh
Q 036340 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRI----EHFASLVDIVGRHGRLEDAMDLIKGMPFEP-DKAVWGALLGACRV 511 (579)
Q Consensus 437 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~ 511 (579)
+...+...|++++|...++..+.. +.|. ..-..|+......|.+++|+..++....+. .......-..++..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 334677888999998888876532 2221 223456778888999999999998764221 22233444577888
Q ss_pred cCCHHHHHHHHHHHhhcCCCC
Q 036340 512 HNNVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 512 ~~~~~~A~~~~~~~~~~~p~~ 532 (579)
.|+.++|+..|+++++..+++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 172 KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cCchHHHHHHHHHHHHccCCh
Confidence 999999999999999877543
No 285
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=8.1 Score=39.30 Aligned_cols=160 Identities=16% Similarity=0.147 Sum_probs=89.4
Q ss_pred HHHHHccCCHHHHHHHhhcCCC--C---chhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHH
Q 036340 67 ISGYAKTGEMEEALRLFNSMPA--R---NVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEA 141 (579)
Q Consensus 67 ~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 141 (579)
++.+.+.+.+++|+.+.+.... + -...+..+|..+...|+++.|-...-.|...+..-|...+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 4555677888888888776652 2 1235666777888888888888888887777777777777777666665443
Q ss_pred HHHHHHhccCCCCCC-CchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCC-----CCccC---CcchHHHHHHHHHH
Q 036340 142 ARVLVKCGSRCDGGE-DLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGE-----GNVRF---KRNIVSWNSMIMCY 212 (579)
Q Consensus 142 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~l~~~~ 212 (579)
..++-. +++ .+...|..++..+.. .+...-.++............ -...+ .-+......|+..|
T Consensus 443 a~~lPt------~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 443 APYLPT------GPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLY 515 (846)
T ss_pred hccCCC------CCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHH
Confidence 333221 222 344567777766665 333333333332210000000 00000 11122333466677
Q ss_pred HhcCCHHHHHHHHHhcCCCCh
Q 036340 213 AKAGDVVSAREIFEQMLERDT 233 (579)
Q Consensus 213 ~~~~~~~~A~~~~~~~~~~~~ 233 (579)
...++++.|+.++-...+.+.
T Consensus 516 l~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHccChHHHHHHHHhccChHH
Confidence 777777777777766655543
No 286
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.80 E-value=0.12 Score=46.14 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=45.4
Q ss_pred HhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHhhcCCHH
Q 036340 440 ACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGMP-F-EPDKAVWGALLGACRVHNNVE 516 (579)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~ 516 (579)
-|+++|.+++|+.+|...+ ...| ++.++..-+.+|.+..++..|..-+..+- . +.-...|..-+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3555666666666665544 3344 55555555555556555555554443331 0 111223333333333455666
Q ss_pred HHHHHHHHHhhcCCCC
Q 036340 517 LAQVAAEALMKVEPEN 532 (579)
Q Consensus 517 ~A~~~~~~~~~~~p~~ 532 (579)
+|.+-++.++.+.|++
T Consensus 183 EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHhHHHHHhhCccc
Confidence 6666666666666664
No 287
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.73 E-value=0.4 Score=39.37 Aligned_cols=93 Identities=13% Similarity=0.121 Sum_probs=62.2
Q ss_pred HHHHHhcCChHHHHHHHHHhHhCCCCCCh-----hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC-cchhHHHHHH
Q 036340 403 IGGCASHGFATEALELFKSMRSFKVLPTY-----ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR-IEHFASLVDI 476 (579)
Q Consensus 403 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 476 (579)
..-+...|++++|..-|...+.. +++.. +.|..-..++.+.+.++.|+.-..+.+ .+.|+ ......-+.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHHH
Confidence 34577888999999888888864 33322 234444456778888888888777666 33452 2333445677
Q ss_pred hhccCChHHHHHHHHhC-CCCCCH
Q 036340 477 VGRHGRLEDAMDLIKGM-PFEPDK 499 (579)
Q Consensus 477 ~~~~g~~~~A~~~~~~~-~~~~~~ 499 (579)
|.+...+++|+.-|+++ ...|..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcch
Confidence 88888888888888877 445543
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.69 E-value=0.053 Score=30.89 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=21.8
Q ss_pred chhhhhhhhhcCCchHHHHHHHHHH
Q 036340 536 YVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
|..|+.+|.+.|+|++|.+++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6789999999999999999999854
No 289
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.54 E-value=3.1 Score=36.19 Aligned_cols=255 Identities=15% Similarity=0.142 Sum_probs=146.8
Q ss_pred CccCCcchHHHHHHHHH-HHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHhcCChHHHHHHhhcCC------
Q 036340 195 NVRFKRNIVSWNSMIMC-YAKAGDVVSAREIFEQMLER-------DTFSWNTMISGYIHVLDMEEASNLFVKMP------ 260 (579)
Q Consensus 195 ~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------ 260 (579)
+.+-.||+..-|..-+. -.+..++++|+.-|+++++- ...+...++....+.+++++....+.+++
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 34557776665543322 12445889999999988652 23456677899999999999999999887
Q ss_pred ---CCChhhHHHHHHHHHhcCCHHHHHHHHccCCC-----CChh----hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 036340 261 ---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ-----KNLV----SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKP 328 (579)
Q Consensus 261 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (579)
.-+....+++++.-+.+.+.+.-..+|+.-.+ .|.. +-..|...|...|++.+..++++++.++-...
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 23445667777766666666666666554332 2222 33457777888888888888888876442111
Q ss_pred C-----------hhhHHHHHHhccCCCchhhHHHHHHH--HhhcCCCCchHHHHHH----HHhhhcCCHHHHHH-HHHhc
Q 036340 329 D-----------RHTFSSILSMSSGIVDLHLGMQIHQM--VTKTVIPDVPINNALI----TMYARCGAIVEARI-IFEEM 390 (579)
Q Consensus 329 ~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~l~----~~~~~~~~~~~A~~-~~~~~ 390 (579)
+ ...|..-+..|....+-..-..+++. ..+...|.+.+...+- .++.+.|.+++|.. +|+..
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 1 23455556666666666666666666 3344445554443332 34556778887754 33333
Q ss_pred c-----CCCCeee---HHHHHHHHHhcCC--hHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHH
Q 036340 391 K-----LLKNVVS---WNAMIGGCASHGF--ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFK 455 (579)
Q Consensus 391 ~-----~~~~~~~---~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 455 (579)
+ -.|...+ |..|...+.+.|= ++. ++..--.-.|.......++.+|.. ++..+-.+++.
T Consensus 259 KNYDEsGspRRttCLKYLVLANMLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 259 KNYDESGSPRRTTCLKYLVLANMLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred hcccccCCcchhHHHHHHHHHHHHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 3 1222222 4445555555441 110 001111123445567777777754 44444444443
No 290
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.49 E-value=19 Score=42.01 Aligned_cols=309 Identities=10% Similarity=0.052 Sum_probs=155.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc----CCCC--hhHHHHHHHHHHhcCChHHHHHHhhc-CCCCChhhHHHHHHHHHhcCC
Q 036340 207 SMIMCYAKAGDVVSAREIFEQM----LERD--TFSWNTMISGYIHVLDMEEASNLFVK-MPHPDTLTWNAMVSGYAQIGN 279 (579)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~----~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 279 (579)
.+..+-.+++.+..|.-.++.- .+.+ ..-+..+...|...+++++...+... ...|+ .+. -+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s--l~~-qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS--LYQ-QILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc--HHH-HHHHHHhhcc
Confidence 5666778899999999999883 2222 22344555589999999888877763 32333 222 2344567899
Q ss_pred HHHHHHHHccCCC--CC-hhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHH-HHhccCCCchhhHHHHHHH
Q 036340 280 LELALDFFKRMPQ--KN-LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI-LSMSSGIVDLHLGMQIHQM 355 (579)
Q Consensus 280 ~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~ 355 (579)
++.|...|+.+.+ |+ ..+++.++......|.++.++...+-.... ..+....++.. ..+.-+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 9999999999987 33 557888887777778887777654443322 12222222221 122234555555444433
Q ss_pred HhhcCCCCchHHHHHHHHhhhcCC---HH--HHHHHHHhccCCC---------CeeeHHHHHHHHHhcCChHHHHHHHHH
Q 036340 356 VTKTVIPDVPINNALITMYARCGA---IV--EARIIFEEMKLLK---------NVVSWNAMIGGCASHGFATEALELFKS 421 (579)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~~~~~~~---~~--~A~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 421 (579)
.+...+-.+. .++....+..+ +. +..+..++....| -...|..++....-.. .+. ..+.
T Consensus 1543 --~~n~e~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~---~~~~ 1615 (2382)
T KOG0890|consen 1543 --DRNIEYWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LEN---SIEE 1615 (2382)
T ss_pred --cccccchhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHH---HHHH
Confidence 1111111111 02222222111 11 1111111111000 0112333333222111 111 1111
Q ss_pred hHhCCCCCChh------hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC-----cchhHHHHHHhhccCChHHHHHHH
Q 036340 422 MRSFKVLPTYI------TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR-----IEHFASLVDIVGRHGRLEDAMDLI 490 (579)
Q Consensus 422 ~~~~~~~p~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~ 490 (579)
.. +..++.. -|..-+.--....+..+-+-.+++..-....+|+ .++|...++.-...|+++.|...+
T Consensus 1616 l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1616 LK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred hh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 11 2222221 1111111111111111211112222111122322 467788888888899999998876
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcC
Q 036340 491 KGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529 (579)
Q Consensus 491 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 529 (579)
-++...--+..+...+..+...|+...|+.++++.++.+
T Consensus 1694 l~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1694 LNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 665322244566667777889999999999999998643
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.36 E-value=0.43 Score=37.29 Aligned_cols=53 Identities=17% Similarity=0.095 Sum_probs=33.0
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 511 VHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 511 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
..++.+++..++..+.-+.|+.+..-..-++.+...|+|++|..+++++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 35666666666666666666666655566666666666666666666655444
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.32 E-value=0.36 Score=38.50 Aligned_cols=71 Identities=18% Similarity=0.106 Sum_probs=40.5
Q ss_pred hccCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCC
Q 036340 478 GRHGRLEDAMDLIKGM-PFEPDKAVWGAL-LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548 (579)
Q Consensus 478 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 548 (579)
.+.++.+++..++..+ ...|.......+ ...+...|++.+|+.+++.+.+-.|..+..-..++.++...|+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 3566677777766666 234443333222 2335566777777777777666666665544555555555554
No 293
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.22 E-value=3.5 Score=32.72 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=64.4
Q ss_pred HHHHHHHHHccCCHHHHHHHhhcCCC---CchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHH
Q 036340 63 WNTVISGYAKTGEMEEALRLFNSMPA---RNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELD 139 (579)
Q Consensus 63 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 139 (579)
...++..+...+.......+++.+.. .++..++.++..|++. +..+..+.++. ..+......++..+.+.+-++
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 34555555555666666666665542 2334555666666554 23344444442 223344455666666666666
Q ss_pred HHHHHHHHhccCCCCCCCchhhHHHHHHHHhhC-CCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHH
Q 036340 140 EAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR-GRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213 (579)
Q Consensus 140 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (579)
++.-++.++.. +...+..+... ++++.|.++..+.. +...|..++..+.
T Consensus 87 ~~~~l~~k~~~-----------~~~Al~~~l~~~~d~~~a~~~~~~~~--------------~~~lw~~~~~~~l 136 (140)
T smart00299 87 EAVELYKKDGN-----------FKDAIVTLIEHLGNYEKAIEYFVKQN--------------NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHhhcC-----------HHHHHHHHHHcccCHHHHHHHHHhCC--------------CHHHHHHHHHHHH
Confidence 66666665422 22233333333 66777777666532 3446666665554
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.11 E-value=0.075 Score=29.75 Aligned_cols=32 Identities=31% Similarity=0.231 Sum_probs=25.2
Q ss_pred HHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHH
Q 036340 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEAR 179 (579)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 179 (579)
|+++++ ..|.+..+|+.++..+...|++++|+
T Consensus 2 y~kAie---~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE---LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH---HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344555 55778889999999999999998886
No 295
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.08 E-value=1.8 Score=40.97 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=48.7
Q ss_pred HhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHH
Q 036340 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFE-PDKAVWGALLGACRVHNNVEL 517 (579)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~ 517 (579)
.+...|.++.+...+..... -+-....+...++......|++++|...-..| +.+ .++.............|-+++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHH
Confidence 34556666666666655432 22233445555566666666666666666555 211 133333322333344556666
Q ss_pred HHHHHHHHhhcCCCCCC
Q 036340 518 AQVAAEALMKVEPENST 534 (579)
Q Consensus 518 A~~~~~~~~~~~p~~~~ 534 (579)
+...|++++.++|....
T Consensus 410 ~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 410 SYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHHhccCChhcc
Confidence 66666666666654433
No 296
>PRK09687 putative lyase; Provisional
Probab=92.80 E-value=7.3 Score=35.30 Aligned_cols=215 Identities=10% Similarity=0.054 Sum_probs=98.8
Q ss_pred CCCCcchHHHHHHHHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCCh----hhHHHHHccC--CCCCcchHHHHH
Q 036340 56 PERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDV----ANAIEFFDRM--PGRDSASLSALV 129 (579)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~--~~~~~~~~~~l~ 129 (579)
..+|..+....+..+...|..+-...+..-...+|+..-..-+.++...|+. .++...+..+ ..++...-...+
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3455555555555565555443333333323345555555555555555542 3455555543 223444444444
Q ss_pred HHHHhCCC-----HHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHH
Q 036340 130 SGLIQNGE-----LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204 (579)
Q Consensus 130 ~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (579)
.++...+. ...+...+..... .++..+-...+.++.+.|+. .+...+-.+. . .++..+
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~-----D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L--------~---d~~~~V 175 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAF-----DKSTNVRFAVAFALSVINDE-AAIPLLINLL--------K---DPNGDV 175 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhh-----CCCHHHHHHHHHHHhccCCH-HHHHHHHHHh--------c---CCCHHH
Confidence 44443321 1223333333322 22334445555666666653 3444444443 1 334444
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHhc-CCCChhHHHHHHHHHHhcCChHHHHHHhhcCC-CCChhhHHHHHHHHHhcCCHH
Q 036340 205 WNSMIMCYAKAG-DVVSAREIFEQM-LERDTFSWNTMISGYIHVLDMEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLE 281 (579)
Q Consensus 205 ~~~l~~~~~~~~-~~~~A~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 281 (579)
-...+.++.+.+ +...+...+..+ .+++...-...+.++.+.|+.. |+..+-... .++ .....+.++.+.|..
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKR-VLSVLIKELKKGT--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChh-HHHHHHHHHcCCc--hHHHHHHHHHhcCCH-
Confidence 444555555442 122333333333 3345555666666666666643 333333333 333 233455666666664
Q ss_pred HHHHHHccCC
Q 036340 282 LALDFFKRMP 291 (579)
Q Consensus 282 ~A~~~~~~~~ 291 (579)
+|...+..+.
T Consensus 252 ~a~p~L~~l~ 261 (280)
T PRK09687 252 TLLPVLDTLL 261 (280)
T ss_pred hHHHHHHHHH
Confidence 4555555544
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.27 E-value=0.25 Score=27.15 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=17.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhhcCCC
Q 036340 504 ALLGACRVHNNVELAQVAAEALMKVEPE 531 (579)
Q Consensus 504 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 531 (579)
.++.++.+.|++++|...|+++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555666666666666666666665
No 298
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.19 E-value=0.44 Score=42.24 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=42.2
Q ss_pred chhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhh
Q 036340 468 EHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMK 527 (579)
Q Consensus 468 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 527 (579)
.++..+++.+...|+.+.+...++++ ...| +...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45566777777777777777777766 3444 666777777777777777777777777765
No 299
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.94 E-value=2.9 Score=34.56 Aligned_cols=91 Identities=20% Similarity=0.135 Sum_probs=46.5
Q ss_pred HHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcc--hHHHH
Q 036340 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN--IVSWN 206 (579)
Q Consensus 129 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 206 (579)
...+...|++++|+..++..+...........+-..|.......|.+++|...++... .++ .....
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~------------~~~w~~~~~e 163 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK------------EESWAAIVAE 163 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc------------cccHHHHHHH
Confidence 3445556666666666666553210001111122334555566666666666666654 221 22233
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC
Q 036340 207 SMIMCYAKAGDVVSAREIFEQMLER 231 (579)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~~~~ 231 (579)
.-.+++...|+-++|..-|++.++.
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3445666666666666666665543
No 300
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.92 E-value=13 Score=36.02 Aligned_cols=179 Identities=7% Similarity=0.034 Sum_probs=115.1
Q ss_pred cCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhH-HH
Q 036340 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF-IS 436 (579)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~ 436 (579)
..+.|.....+++..+....++.-.+.+..++. ...+-..|..++.+|..+ ..+.-..+|+++.+.. -|.... ..
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~Re 137 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRE 137 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHH
Confidence 344556666777777777777777777777764 445666788888888888 4577888888888653 333333 33
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhhCCCC---C---cchhHHHHHHhhccCChHHHHHHHHhCC----CCCCHHHHHHHH
Q 036340 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEP---R---IEHFASLVDIVGRHGRLEDAMDLIKGMP----FEPDKAVWGALL 506 (579)
Q Consensus 437 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~ 506 (579)
|...| ..++.+.+..+|.+++.+ +-| + .+.|..+... -..+.+..+.+..+.+ ..--...+..+.
T Consensus 138 La~~y-Ekik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 138 LADKY-EKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHH-HHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 44444 448888888888888754 233 1 1244444332 1456666666666652 222334455555
Q ss_pred HHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhh
Q 036340 507 GACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545 (579)
Q Consensus 507 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 545 (579)
.-|....++.+|++++..+++.+..|..+...++.-+..
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 667788899999999998888887776665555554444
No 301
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.87 E-value=17 Score=37.50 Aligned_cols=417 Identities=11% Similarity=-0.005 Sum_probs=205.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHh--cCChhhHHHHHccCCC-CCcch-HHHHHHHHHhCCC
Q 036340 62 TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQ--NGDVANAIEFFDRMPG-RDSAS-LSALVSGLIQNGE 137 (579)
Q Consensus 62 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~-~~~~~-~~~l~~~~~~~g~ 137 (579)
.|.....+ .+.|++..+.++...+.+.-...|......... ....++...++++... |-... -...+..+.+.++
T Consensus 36 ~f~~A~~a-~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~ 114 (644)
T PRK11619 36 RYQQIKQA-WDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARRED 114 (644)
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccC
Confidence 34444444 367888888888877753323333222222222 3356667777776554 32222 2234445566777
Q ss_pred HHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCC
Q 036340 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217 (579)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 217 (579)
+...+..+ . ..|.+.........+....|+.++|.+..+.+= ..| ...+..+..++..+.+.|.
T Consensus 115 w~~~~~~~-~------~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW--------~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 115 WRGLLAFS-P------EKPKPVEARCNYYYAKWATGQQQEAWQGAKELW--------LTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHhc-C------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--------ccC-CCCChHHHHHHHHHHHcCC
Confidence 77666622 1 234555566677777888888776655555542 111 3345567777777776665
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHccCCCCChh
Q 036340 218 VVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPD-TLTWNAMVSGYAQIGNLELALDFFKRMPQKNLV 296 (579)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 296 (579)
..... ++ .-+......|+...|..+...+. ++ ......++..+. +...+...+.... ++..
T Consensus 179 lt~~d-~w------------~R~~~al~~~~~~lA~~l~~~l~-~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~ 240 (644)
T PRK11619 179 QDPLA-YL------------ERIRLAMKAGNTGLVTYLAKQLP-ADYQTIASALIKLQN---DPNTVETFARTTG-PTDF 240 (644)
T ss_pred CCHHH-HH------------HHHHHHHHCCCHHHHHHHHHhcC-hhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChh
Confidence 43321 11 12334445666666666666552 22 222333333333 3444444444332 2221
Q ss_pred hHHHHHHH--HHhCCCchHHHHHHHHHHHcC-CCCChh--hHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHH
Q 036340 297 SWNSMIAG--CETNKDYEGAIKLFIQMQVEG-EKPDRH--TFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALI 371 (579)
Q Consensus 297 ~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 371 (579)
.-..++.+ -....+.+.|..++....... ..+... ....+.......+..+.+..++..... ...+.......+
T Consensus 241 ~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~-~~~~~~~~e~r~ 319 (644)
T PRK11619 241 TRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM-RSQSTSLLERRV 319 (644)
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc-ccCCcHHHHHHH
Confidence 11111222 223456788999998875443 222221 122222222222113344444443211 112444555556
Q ss_pred HHhhhcCCHHHHHHHHHhccC--CCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHH
Q 036340 372 TMYARCGAIVEARIIFEEMKL--LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449 (579)
Q Consensus 372 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 449 (579)
....+.++++.+...+..|.. .....-.-=+.+++...|+.++|..+|+++.. .. +|..++.+ .+.|..-.
T Consensus 320 r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~ 392 (644)
T PRK11619 320 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYP 392 (644)
T ss_pred HHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCC
Confidence 666688888888888888751 11122223356676678999999999988742 12 23222211 11121100
Q ss_pred H-HHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 036340 450 G-RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525 (579)
Q Consensus 450 a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 525 (579)
- ......-.. .+ +... -..-+..+...|+...|...+..+....+......+.......|.++.++....+.
T Consensus 393 ~~~~~~~~~~~--~~-~~~~-~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 393 LKIDKAPKPDS--AL-TQGP-EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred CCCCCCCchhh--hh-ccCh-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0 000000000 00 0001 11233455567777777777766532345555555666666777777777666544
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.68 E-value=1.9 Score=35.81 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
+..++..|.+.|+.+.|++.|.++.....+.......+..++......|++..+...+.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44455555555555555555555544322222233344555555555555555555554443
No 303
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.65 E-value=0.88 Score=40.44 Aligned_cols=83 Identities=17% Similarity=0.093 Sum_probs=68.6
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcch
Q 036340 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202 (579)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 202 (579)
.++..++..+...|+++.+.+.++++.. ..|-+...|..++.+|.+.|+...|+..|+.+... .....|+.|..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~---~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~---~~edlgi~P~~ 227 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE---LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT---LAEELGIDPAP 227 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH---hhhhcCCCccH
Confidence 3456678888999999999999999998 56777889999999999999999999999988632 22367889988
Q ss_pred HHHHHHHHH
Q 036340 203 VSWNSMIMC 211 (579)
Q Consensus 203 ~~~~~l~~~ 211 (579)
.+.......
T Consensus 228 ~~~~~y~~~ 236 (280)
T COG3629 228 ELRALYEEI 236 (280)
T ss_pred HHHHHHHHH
Confidence 887766665
No 304
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.64 E-value=0.19 Score=44.81 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=74.0
Q ss_pred HHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchH
Q 036340 474 VDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551 (579)
Q Consensus 474 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 551 (579)
+.-|.++|.+++|++.+... ...| +++++..-..+|.+.+.+..|+.-...++.++.....+|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 45678999999999999875 5666 889999999999999999999999999998888777777777777777888888
Q ss_pred HHHHHHHHHhCC
Q 036340 552 ANEVRLLMKSNN 563 (579)
Q Consensus 552 A~~~~~~~~~~~ 563 (579)
|.+-.+...+..
T Consensus 184 AKkD~E~vL~LE 195 (536)
T KOG4648|consen 184 AKKDCETVLALE 195 (536)
T ss_pred HHHhHHHHHhhC
Confidence 877766655443
No 305
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.42 E-value=2.7 Score=35.33 Aligned_cols=196 Identities=17% Similarity=0.154 Sum_probs=109.3
Q ss_pred hHHHHHHHhhCCCCCcchHHHHHHHHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcc-
Q 036340 45 LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSA- 123 (579)
Q Consensus 45 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 123 (579)
-+.|.-+|++- ..|.++.---..+.|+.+++.+.- .-+.+||-|.-.+...|+++.|.+.|+...+-|+.
T Consensus 62 eeRA~l~fERG-----vlYDSlGL~~LAR~DftQaLai~P----~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y 132 (297)
T COG4785 62 EERAQLLFERG-----VLYDSLGLRALARNDFSQALAIRP----DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 132 (297)
T ss_pred HHHHHHHHHhc-----chhhhhhHHHHHhhhhhhhhhcCC----CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc
Confidence 56666666654 334444443344566666665432 33567888888889999999999999988775543
Q ss_pred hHHHHH--HHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHc-cccccCCCCCCCccCCc
Q 036340 124 SLSALV--SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFD-KIPVNCDRGEGNVRFKR 200 (579)
Q Consensus 124 ~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~ 200 (579)
.|..+= -++---|++.-|.+-+...-+.. ...|-...|..+.. +.-++.+|..-+. +.. +...
T Consensus 133 ~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~----------~~d~ 198 (297)
T COG4785 133 NYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE----------KSDK 198 (297)
T ss_pred hHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH----------hccH
Confidence 222222 23345788888887777766532 11222223333332 2335556554443 332 1122
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHhcCChHHHHHHhhcCCCCCh
Q 036340 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLER-------DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDT 264 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 264 (579)
+..-|+ ++..|.-.=..+.+.+-...-... =+.+|..+.+.+...|+.++|..+|+-....++
T Consensus 199 e~WG~~-iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 199 EQWGWN-IVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hhhhHH-HHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 222222 233333333334444443333222 135778888888888999999988887664443
No 306
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.39 E-value=1.7 Score=36.07 Aligned_cols=96 Identities=11% Similarity=0.058 Sum_probs=60.4
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh--hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhH--HH
Q 036340 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI--TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA--SL 473 (579)
Q Consensus 398 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 473 (579)
.+..++..|.+.|+.+.|++.|.++.+....|... .+..+++.....+++..+...+.++..-.....+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 46667778888888888888888887765555543 566677777778888888877776643211111111111 11
Q ss_pred H--HHhhccCChHHHHHHHHhC
Q 036340 474 V--DIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 474 ~--~~~~~~g~~~~A~~~~~~~ 493 (579)
. -.+...+++.+|...|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 1 1234577888887777665
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.31 E-value=3.1 Score=33.31 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=22.1
Q ss_pred hcCChHHHHHHHHHhHhCCCCCChhhHHH-HHHHhcccCcHHHHHHHHHHhH
Q 036340 408 SHGFATEALELFKSMRSFKVLPTYITFIS-VLSACAHAGLVEEGRQHFKSMV 458 (579)
Q Consensus 408 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~ 458 (579)
+.++.+.+..++..+.- +.|....... -...+...|++.+|+.+++++.
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34455555555555542 3444332211 1123445555555555555543
No 308
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.26 E-value=4 Score=35.85 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcH
Q 036340 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447 (579)
Q Consensus 412 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 447 (579)
-+-++.++++|..+|+.||..+-..|+.++.+.+-.
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 356788899999999999988888888888776643
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.12 E-value=0.17 Score=28.17 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=24.7
Q ss_pred CchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 535 PYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
++..++.++...|++++|.+.+++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 47789999999999999999999987654
No 310
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.78 E-value=7.9 Score=31.55 Aligned_cols=115 Identities=7% Similarity=0.105 Sum_probs=61.0
Q ss_pred CccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc--CChHHHHHHhhcCCCCChhhHHHHHH
Q 036340 195 NVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHV--LDMEEASNLFVKMPHPDTLTWNAMVS 272 (579)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~l~~ 272 (579)
..+++|+...+..+++.+.+.|++.....++.--+=+|.......+-.+... .-..-|++++.++. ..+..+++
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~~iie 97 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYEEIIE 97 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHHHHHH
Confidence 4577889899999999999999988887777654444443322222111111 01223333333332 12333445
Q ss_pred HHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchH
Q 036340 273 GYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEG 313 (579)
Q Consensus 273 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 313 (579)
.+...|++-+|.++.+.....+......++.+..+.+|...
T Consensus 98 vLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 98 VLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred HHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHH
Confidence 55566666666666655433333333344444444444433
No 311
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.77 E-value=16 Score=35.08 Aligned_cols=413 Identities=13% Similarity=0.029 Sum_probs=202.3
Q ss_pred HHHHHHHhCC--CHHHHHHHHHHhccCCCCCCCch--hhHHHHHHHH-hhCCCHHHHHHHHccccccCCCCCCCccC-Cc
Q 036340 127 ALVSGLIQNG--ELDEAARVLVKCGSRCDGGEDLV--RAYNTLIVGY-GQRGRVEEARKLFDKIPVNCDRGEGNVRF-KR 200 (579)
Q Consensus 127 ~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~ 200 (579)
.++..+...| ++..++++++..... .++... .+...++..+ .-..+++.|...+++.-..... -..+ ..
T Consensus 12 GlAe~~rt~~PPkIkk~IkClqA~~~~--~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~---ip~fydv 86 (629)
T KOG2300|consen 12 GLAEHFRTSGPPKIKKCIKCLQAIFQF--QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS---IPSFYDV 86 (629)
T ss_pred HHHHHHhhcCChhHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc---cccHHhh
Confidence 4556666677 788888888887764 222222 2333333332 3356677776666654311000 0011 12
Q ss_pred chHHHHHHHHHHHhcC-CHHHHHHHHHhcCCC--ChhH-----HHHHHHHHHhcCChHHHHHHhhcCC---CCChhhHHH
Q 036340 201 NIVSWNSMIMCYAKAG-DVVSAREIFEQMLER--DTFS-----WNTMISGYIHVLDMEEASNLFVKMP---HPDTLTWNA 269 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~--~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ 269 (579)
...++..+...|.... .+..+..++.+.++- +... ...++..+.-..++..|.+++.--- ++-...|..
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 2345677778887766 777788888777552 3323 3345667777789999998865443 222223322
Q ss_pred HHH------HHHhcCCHHHHHHHHccC---CC---CChh------hH--HHHHHHHHhCCCchHHHHHHHHHHHc---CC
Q 036340 270 MVS------GYAQIGNLELALDFFKRM---PQ---KNLV------SW--NSMIAGCETNKDYEGAIKLFIQMQVE---GE 326 (579)
Q Consensus 270 l~~------~~~~~g~~~~A~~~~~~~---~~---~~~~------~~--~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 326 (579)
++. .+....+..+..++.... .+ +|.. .| +.-+.-|...|+...+...++++++. +.
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 221 122233444444444333 22 3322 11 11233456677777777777766543 22
Q ss_pred CCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchH----H-----HHHHHHhhh--cCCHHHHHHHHHhccCCC-
Q 036340 327 KPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPI----N-----NALITMYAR--CGAIVEARIIFEEMKLLK- 394 (579)
Q Consensus 327 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~-----~~l~~~~~~--~~~~~~A~~~~~~~~~~~- 394 (579)
.|+ .....- ........ .+.. -|...+ | ..+..+|.+ .+-.|+++...++.+..+
T Consensus 247 t~~-~~h~e~---ilgsps~~----l~~w-----lpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~ 313 (629)
T KOG2300|consen 247 TSS-RGHDEK---ILGSPSPI----LFEW-----LPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADL 313 (629)
T ss_pred CCC-CCcccc---ccCCCChH----HHhh-----ccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccc
Confidence 211 000000 00000000 0000 011000 0 011111211 011233333333333222
Q ss_pred CeeeHHH--------HHHHHHhcCChHHHHHHHHHhHhCC-CCCChh--------hHHHHHHHhcccCcHHHHHHHHHHh
Q 036340 395 NVVSWNA--------MIGGCASHGFATEALELFKSMRSFK-VLPTYI--------TFISVLSACAHAGLVEEGRQHFKSM 457 (579)
Q Consensus 395 ~~~~~~~--------l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~ 457 (579)
....++. ++.+-.-.|++.+|++-...|.+-- -.|.+. .-..+...+...|.++.|...|..+
T Consensus 314 ~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a 393 (629)
T KOG2300|consen 314 MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEA 393 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHH
Confidence 2222221 1222234688888888888876421 123311 1112222455678888888888877
Q ss_pred HHhhCCCCC--cchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHH------HH--HHHH--HhhcCCHHHHHHHHHHH
Q 036340 458 VNEYGIEPR--IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVW------GA--LLGA--CRVHNNVELAQVAAEAL 525 (579)
Q Consensus 458 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~--l~~~--~~~~~~~~~A~~~~~~~ 525 (579)
.+.. -.-| ...-..++..|.+.|+.+.-.++++..+ +|+..++ +. ++.+ ....+++.+|...+.+.
T Consensus 394 ~k~t-~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~ 471 (629)
T KOG2300|consen 394 TKLT-ESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRET 471 (629)
T ss_pred HHhh-hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 6541 1222 2233456778888888888888887774 1111111 11 1122 34678899999998888
Q ss_pred hhcCCC-C-----CCCchhhhhhhhhcCCchHHHHHHHHH
Q 036340 526 MKVEPE-N-----STPYVLLYNMYADVGRWDDANEVRLLM 559 (579)
Q Consensus 526 ~~~~p~-~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (579)
++...- + ...+..|+.+....|+..++.+..+-.
T Consensus 472 Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 472 LKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchH
Confidence 875511 1 112445666777778888877766533
No 312
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.08 E-value=0.17 Score=26.14 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=15.6
Q ss_pred CchhhhhhhhhcCCchHHHHHHH
Q 036340 535 PYVLLYNMYADVGRWDDANEVRL 557 (579)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~ 557 (579)
+...++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34566777777777777777664
No 313
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.05 E-value=26 Score=36.27 Aligned_cols=462 Identities=14% Similarity=0.122 Sum_probs=218.4
Q ss_pred CchhHHHHHHHHHHHcCCCCChHHHHHHHhhCCCCCcchHHHHHHHHH-ccCCHHHHHHHhhcCC----CCch-----hh
Q 036340 24 RDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYA-KTGEMEEALRLFNSMP----ARNV-----VS 93 (579)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~----~~~~-----~~ 93 (579)
.+...|..|+....+. ++.+.+-+.--+..+..++-.++..+. ...+++.|+..+++.. +++. ..
T Consensus 28 ~~l~~Y~kLI~~ai~C-----L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~ 102 (608)
T PF10345_consen 28 EQLKQYYKLIATAIKC-----LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRC 102 (608)
T ss_pred hhHHHHHHHHHHHHHH-----HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3456677777766555 333333111111223356667777665 6789999999999775 2221 12
Q ss_pred HHHHHHHHHhcCChhhHHHHHccCCCC----CcchHHH---HH--HHHHhCCCHHHHHHHHHHhccCCC-CCCCchhhHH
Q 036340 94 WNAMISGFLQNGDVANAIEFFDRMPGR----DSASLSA---LV--SGLIQNGELDEAARVLVKCGSRCD-GGEDLVRAYN 163 (579)
Q Consensus 94 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~---l~--~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~ 163 (579)
...++..+.+.+... |...+++..+. ....|.- ++ ..+...+++..|.+.++.+..... ...+...++.
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 334556666666655 88877775431 1112221 22 222233799999999988766421 1333444454
Q ss_pred HHHHHHh--hCCCHHHHHHHHccccccCCC--CCCCccCCcchHHHHHHHHHH--HhcCCHHHHHHHHHhcCC---C--C
Q 036340 164 TLIVGYG--QRGRVEEARKLFDKIPVNCDR--GEGNVRFKRNIVSWNSMIMCY--AKAGDVVSAREIFEQMLE---R--D 232 (579)
Q Consensus 164 ~l~~~~~--~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~---~--~ 232 (579)
.++.+.. +.+..+.+.+.++.+...... -.+.. -.|...+|..+++.+ ...|++..+...++++.+ . +
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~-~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~ 260 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV-HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKK 260 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC-CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 5554433 456566666666655321110 01112 356677777777654 467887777776665522 1 0
Q ss_pred hhHHHH-----HHHHHHhcCC--hHHHHHHhhcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHcc-------CC-C---
Q 036340 233 TFSWNT-----MISGYIHVLD--MEEASNLFVKMPHPDTLTWNAMVSG--YAQIGNLELALDFFKR-------MP-Q--- 292 (579)
Q Consensus 233 ~~~~~~-----l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~-------~~-~--- 292 (579)
...|.. .+..-...+. .+...-.|..+...+..+...++.+ .+..+..++|.+++++ .. .
T Consensus 261 ~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~ 340 (608)
T PF10345_consen 261 SPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPS 340 (608)
T ss_pred CccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCC
Confidence 000100 0000000000 0000122333322333322222222 2333444455444443 33 1
Q ss_pred -CC--------hhhHHHH---------HHHHHhCCCchHHHHHHHHHHHcCC-CCC-----hhhHHHHHH--hccCCCch
Q 036340 293 -KN--------LVSWNSM---------IAGCETNKDYEGAIKLFIQMQVEGE-KPD-----RHTFSSILS--MSSGIVDL 346 (579)
Q Consensus 293 -~~--------~~~~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~~--~~~~~~~~ 346 (579)
++ ...|... +...+-.+++..|...++.|..... .|+ ...+...+. .+...|+.
T Consensus 341 ~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l 420 (608)
T PF10345_consen 341 APSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDL 420 (608)
T ss_pred CCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCH
Confidence 00 0112111 2233457889999999998875421 111 223333333 34567999
Q ss_pred hhHHHHHH-------H--HhhcCCCCchHHHH--HHHHhhh--cCCHHH--HHHHHHhcc----CCC--CeeeHHHH-HH
Q 036340 347 HLGMQIHQ-------M--VTKTVIPDVPINNA--LITMYAR--CGAIVE--ARIIFEEMK----LLK--NVVSWNAM-IG 404 (579)
Q Consensus 347 ~~a~~~~~-------~--~~~~~~~~~~~~~~--l~~~~~~--~~~~~~--A~~~~~~~~----~~~--~~~~~~~l-~~ 404 (579)
+.|...|. . ...+...+..++.. ++-.+.. .....+ +..+++.+. ..| +..++..+ +.
T Consensus 421 ~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~ 500 (608)
T PF10345_consen 421 EAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLA 500 (608)
T ss_pred HHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHH
Confidence 99999997 2 33333333333322 1222222 222333 778888775 122 12223333 33
Q ss_pred HHHhcCC--hHHHHHHHHHhH-----hCCCCC-ChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC--cchh----
Q 036340 405 GCASHGF--ATEALELFKSMR-----SFKVLP-TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR--IEHF---- 470 (579)
Q Consensus 405 ~~~~~~~--~~~A~~~~~~~~-----~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~---- 470 (579)
++..... ..++...+.+.. ..+..- ...+++.+...+. .|+..+.............-.|| ...|
T Consensus 501 ~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~ 579 (608)
T PF10345_consen 501 TYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVA 579 (608)
T ss_pred HHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3322111 123333332221 112111 1123333333344 67666655544433222122232 2333
Q ss_pred -HHHHHHhhccCChHHHHHHHHhC
Q 036340 471 -ASLVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 471 -~~l~~~~~~~g~~~~A~~~~~~~ 493 (579)
..+.+.+...|+.++|.....+.
T Consensus 580 ~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 580 SGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHH
Confidence 34667799999999998877654
No 314
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.98 E-value=4.7 Score=30.92 Aligned_cols=58 Identities=9% Similarity=0.033 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 036340 269 AMVSGYAQIGNLELALDFFKRMP---QKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGE 326 (579)
Q Consensus 269 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 326 (579)
..+..+...|+-+.-.+++..+. ++++...-.+..+|.+.|+..++-+++.+.-+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455555555555555443 24444445555555555555555555555555443
No 315
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.76 E-value=2.1 Score=41.63 Aligned_cols=86 Identities=12% Similarity=-0.015 Sum_probs=54.3
Q ss_pred ccCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHH
Q 036340 479 RHGRLEDAMDLIKGM-PFEP--DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555 (579)
Q Consensus 479 ~~g~~~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 555 (579)
..|+...|...+..+ ...| ..+....+...+.+.|...+|-.++.+.+.+....|.++..++.+|....+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 356777776666554 2233 2234445555666666666777777777776666666677777777777777777777
Q ss_pred HHHHHhCCC
Q 036340 556 RLLMKSNNI 564 (579)
Q Consensus 556 ~~~~~~~~~ 564 (579)
+++..++..
T Consensus 699 ~~~a~~~~~ 707 (886)
T KOG4507|consen 699 FRQALKLTT 707 (886)
T ss_pred HHHHHhcCC
Confidence 777665543
No 316
>PRK12798 chemotaxis protein; Reviewed
Probab=89.70 E-value=19 Score=34.15 Aligned_cols=186 Identities=19% Similarity=0.241 Sum_probs=121.8
Q ss_pred cCCHHHHHHHHHhcc---CCCCeeeHHHHHHHH-HhcCChHHHHHHHHHhHhCCCCCChh----hHHHHHHHhcccCcHH
Q 036340 377 CGAIVEARIIFEEMK---LLKNVVSWNAMIGGC-ASHGFATEALELFKSMRSFKVLPTYI----TFISVLSACAHAGLVE 448 (579)
Q Consensus 377 ~~~~~~A~~~~~~~~---~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~ 448 (579)
.|+-+++.+.+..+. .++....+..|+.+- ....++.+|+++|+...- .-|... ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 488899999998885 344555677776654 456789999999998763 345433 3333344567889999
Q ss_pred HHHHHHHHhHHhhCCCCCcchhH-HHHHHhhccC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 036340 449 EGRQHFKSMVNEYGIEPRIEHFA-SLVDIVGRHG---RLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEA 524 (579)
Q Consensus 449 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 524 (579)
++..+-.....++...|-...|. .++..+.+.+ ..+.-..++..|.-.--...|..+.+.-.-.|+.+-|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888888888777667444333 3333444433 3344455555554233456888888888899999999999999
Q ss_pred HhhcCCCCCCCchhhhhhh-----hhcCCchHHHHHHHHHHhCCCC
Q 036340 525 LMKVEPENSTPYVLLYNMY-----ADVGRWDDANEVRLLMKSNNIK 565 (579)
Q Consensus 525 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~ 565 (579)
+..+.+.+ ..-...+..| .-..++++|.+.+..+-...+.
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence 99876443 3333334444 3345677777777766544443
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.68 E-value=27 Score=36.07 Aligned_cols=186 Identities=14% Similarity=0.096 Sum_probs=89.6
Q ss_pred hhcCCHHHHHHHHHhcc----CCCC-----eeeHHHHHHH--HHhcCChHHHHHHHH--------HhHhCCCCCChhhHH
Q 036340 375 ARCGAIVEARIIFEEMK----LLKN-----VVSWNAMIGG--CASHGFATEALELFK--------SMRSFKVLPTYITFI 435 (579)
Q Consensus 375 ~~~~~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~--~~~~~~~~~A~~~~~--------~~~~~~~~p~~~~~~ 435 (579)
+-.+++..|...++.+. ..|+ ...+..++.+ +-..|+.+.|+..|. .....+..++..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 34678888888888775 1222 1122222222 334689999999997 444434333333333
Q ss_pred HH--HHHhcccC--cHHH--HHHHHHHhHHhhCCCCCc--chhHHH-HHHhhcc---------CChHHHHHHH-HhCCCC
Q 036340 436 SV--LSACAHAG--LVEE--GRQHFKSMVNEYGIEPRI--EHFASL-VDIVGRH---------GRLEDAMDLI-KGMPFE 496 (579)
Q Consensus 436 ~l--~~~~~~~~--~~~~--a~~~~~~~~~~~~~~~~~--~~~~~l-~~~~~~~---------g~~~~A~~~~-~~~~~~ 496 (579)
.+ +..+...+ ..++ ..++++.+.....-.|+. .++..+ +.++..- ..+.++++.. +..+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 21 11222222 2222 666666553322222221 222222 2222211 1223344444 332222
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcC---CCCCCCch------hhhhhhhhcCCchHHHHHHHHHH
Q 036340 497 PDKAVWGALLGACRVHNNVELAQVAAEALMKVE---PENSTPYV------LLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 497 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
.-......++..-.-.|+..+.......+.... |+...... .+...+...|+.++|.+...+..
T Consensus 532 ~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 212222333333333788877666666665432 44343333 44556788899999999887764
No 318
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.54 E-value=0.26 Score=27.46 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=24.9
Q ss_pred CchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 535 PYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
+|..++.+|...|++++|+..+++..+..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 47889999999999999999999987654
No 319
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.52 E-value=0.28 Score=39.75 Aligned_cols=110 Identities=13% Similarity=0.133 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccC---ChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHhhcC-
Q 036340 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG---RLEDAMDLIKGM--------PFEPD-KAVWGALLGACRVHN- 513 (579)
Q Consensus 447 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~--------~~~~~-~~~~~~l~~~~~~~~- 513 (579)
++.|.+.++..... -+.|...++.-+.++.... ...++.+++++. .+.|+ ..++..+..++...+
T Consensus 7 FE~ark~aea~y~~--nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 55666666654433 1335665555555554332 223344444333 35564 456666776654322
Q ss_pred ---C-------HHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCC
Q 036340 514 ---N-------VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565 (579)
Q Consensus 514 ---~-------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (579)
+ +++|...|+++...+|+| .+-+.-. ...++|-++..++.+.+..
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-----e~Y~ksL--e~~~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNN-----ELYRKSL--EMAAKAPELHMEIHKQGLG 139 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT------HHHHHHH--HHHHTHHHHHHHHHHSSS-
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCc-----HHHHHHH--HHHHhhHHHHHHHHHHHhh
Confidence 2 455556666666677874 3322222 4446777787777766544
No 320
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.37 E-value=0.72 Score=24.67 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=17.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhhcCCC
Q 036340 502 WGALLGACRVHNNVELAQVAAEALMKVEPE 531 (579)
Q Consensus 502 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 531 (579)
|..+...+...|+++.|...++++++..|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444555555666666666666666665553
No 321
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.04 E-value=17 Score=32.95 Aligned_cols=23 Identities=17% Similarity=-0.086 Sum_probs=18.1
Q ss_pred hhhhhhhhhcCCchHHHHHHHHH
Q 036340 537 VLLYNMYADVGRWDDANEVRLLM 559 (579)
Q Consensus 537 ~~l~~~~~~~g~~~~A~~~~~~~ 559 (579)
..-+..++++++|++|...++-.
T Consensus 250 W~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 250 WNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH
Confidence 34466788999999999998854
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.01 E-value=7.2 Score=38.37 Aligned_cols=150 Identities=21% Similarity=0.214 Sum_probs=92.0
Q ss_pred cCCCHHHHHHHhccCCCCchhHHHHHHHHHHHcCCCCChHHHHHHHhhCCCCCcchHHHHHHHHHccCCHHHHHHHhhcC
Q 036340 7 KRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSM 86 (579)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 86 (579)
=+|+++.|-.++-.++++ ..+.+..-+-+.|. .++|+++ .+|+.. --....+.|+++.|.++..+.
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~---~e~AL~~-----s~D~d~---rFelal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGM---KEQALEL-----STDPDQ---RFELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccc---hHhhhhc-----CCChhh---hhhhhhhcCcHHHHHHHHHhh
Confidence 345555555544444422 23344444445544 6666654 233322 122234667777777766555
Q ss_pred CCCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHH
Q 036340 87 PARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166 (579)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 166 (579)
.+..-|..|..+....+++..|.+.|.... .+..|+-.+...|+-+....+-....+. + . .|...
T Consensus 664 --~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~~--g-~-----~N~AF 728 (794)
T KOG0276|consen 664 --NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKKQ--G-K-----NNLAF 728 (794)
T ss_pred --cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHhh--c-c-----cchHH
Confidence 566778899999999999999999888753 3566677777777776655555555443 1 1 22333
Q ss_pred HHHhhCCCHHHHHHHHccc
Q 036340 167 VGYGQRGRVEEARKLFDKI 185 (579)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~~ 185 (579)
-++...|+++++.+++..-
T Consensus 729 ~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHcCCHHHHHHHHHhc
Confidence 4566789999999888765
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.87 E-value=4.6 Score=39.59 Aligned_cols=25 Identities=16% Similarity=0.087 Sum_probs=12.9
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHccc
Q 036340 161 AYNTLIVGYGQRGRVEEARKLFDKI 185 (579)
Q Consensus 161 ~~~~l~~~~~~~g~~~~A~~~~~~~ 185 (579)
-|..|..+....|++..|.+.|...
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhh
Confidence 3455555555555555555555444
No 324
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.85 E-value=29 Score=35.28 Aligned_cols=248 Identities=11% Similarity=-0.010 Sum_probs=127.6
Q ss_pred hCCCchHHHHHHHHHHH-------cCCCCChhhHHHHHHhccCCC-----chhhHHHHHHHHhhcCCCCchHHHHHHHHh
Q 036340 307 TNKDYEGAIKLFIQMQV-------EGEKPDRHTFSSILSMSSGIV-----DLHLGMQIHQMVTKTVIPDVPINNALITMY 374 (579)
Q Consensus 307 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (579)
...|.+.|+.+|+.+.+ .| .......+..+|.+.. +...|..++......-.|+.......+...
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYET 337 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHc
Confidence 34566677777766655 33 2223333444443322 445566666663333333333332222222
Q ss_pred hh-cCCHHHHHHHHHhccCCCCeeeHHHHHHHHHh----cCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHH
Q 036340 375 AR-CGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS----HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449 (579)
Q Consensus 375 ~~-~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 449 (579)
.. ..+...|.++|......-.+..+-.+..+|.. ..+.+.|..++++..+.| .|...--...+..+.. +.++.
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~ 415 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDT 415 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccH
Confidence 22 24567788888776534444444444444432 246778888888888777 3332222222233333 55555
Q ss_pred HHHHHHHhHHhhCCCCCcchhHHHHHH---hhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHH
Q 036340 450 GRQHFKSMVNEYGIEPRIEHFASLVDI---VGR----HGRLEDAMDLIKGMPFEPDKAVWGALLGACRV----HNNVELA 518 (579)
Q Consensus 450 a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A 518 (579)
+.-.+..+.. .+.......-..+... ... ..+.+.+...+......-+......+...+.. ..+++.|
T Consensus 416 ~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a 494 (552)
T KOG1550|consen 416 ALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKA 494 (552)
T ss_pred HHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHH
Confidence 5555444422 1322111111111111 111 22455566666666444566666666665543 3468888
Q ss_pred HHHHHHHhhcCCCCCCCchhhhhhhhhc---CCchHHHHHHHHHHhCC
Q 036340 519 QVAAEALMKVEPENSTPYVLLYNMYADV---GRWDDANEVRLLMKSNN 563 (579)
Q Consensus 519 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 563 (579)
...|.++.... ......++..+..- ..+..|.+++++..+.+
T Consensus 495 ~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 495 AAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 88888887666 55666777666432 11577888888776544
No 325
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=0.98 Score=38.43 Aligned_cols=85 Identities=8% Similarity=0.038 Sum_probs=52.9
Q ss_pred HhcccCcHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHhhccCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCCHH
Q 036340 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRI-EHFASLVDIVGRHGRLEDAMDLIKGM-PFEPDKA-VWGALLGACRVHNNVE 516 (579)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~ 516 (579)
.|.....++.|+..|.+.+ -+.|.. ..|..-+.++.+..+++.+..-..+. .+.||.. ....+..+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 4666677777777777665 446655 44456666677777777766554444 5556544 3333445556666777
Q ss_pred HHHHHHHHHhh
Q 036340 517 LAQVAAEALMK 527 (579)
Q Consensus 517 ~A~~~~~~~~~ 527 (579)
+|+..+.++..
T Consensus 96 eaI~~Lqra~s 106 (284)
T KOG4642|consen 96 EAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHH
Confidence 77777777754
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.62 E-value=0.63 Score=27.80 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=22.1
Q ss_pred hhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 537 VLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 537 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 467888999999999999998887544
No 327
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.12 E-value=0.27 Score=27.04 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=25.0
Q ss_pred CchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 535 PYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
++..++.++.+.|++++|.+.++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 35678999999999999999999998643
No 328
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.80 E-value=0.49 Score=42.52 Aligned_cols=87 Identities=13% Similarity=0.226 Sum_probs=56.2
Q ss_pred ccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHH
Q 036340 479 RHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVR 556 (579)
Q Consensus 479 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 556 (579)
..|.+++|++.+... +..| ....|..-..++.+.+....|++-+..+++++|+....|-.-+.+..-.|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 455566666666555 3333 34444455556666777777777777777777777666666666777777777777777
Q ss_pred HHHHhCCCC
Q 036340 557 LLMKSNNIK 565 (579)
Q Consensus 557 ~~~~~~~~~ 565 (579)
+...+.++.
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 776666654
No 329
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.70 E-value=1.3 Score=37.08 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=44.5
Q ss_pred HHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC
Q 036340 471 ASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533 (579)
Q Consensus 471 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 533 (579)
...+..+.+.+..++|+...+.- +.+| |...-..++..++-.|++++|..-++-+-++.|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34455667778888887776554 4455 555666677778888888888888888888888754
No 330
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.66 E-value=0.87 Score=28.58 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=26.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCC
Q 036340 504 ALLGACRVHNNVELAQVAAEALMKVEPENSTP 535 (579)
Q Consensus 504 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 535 (579)
.+.-++.+.|++++|....+.+++.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45567889999999999999999999998653
No 331
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.45 E-value=23 Score=32.42 Aligned_cols=132 Identities=13% Similarity=0.172 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHhccC--CCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHh
Q 036340 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSG--IVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEE 389 (579)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 389 (579)
++.+.+++.|.+.|.+-+..++......... ..++ ......|..+|+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~------------------------------~~~~~ra~~iy~~ 128 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDY------------------------------DEIIQRAKEIYKE 128 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccH------------------------------HHHHHHHHHHHHH
Confidence 4566778888888888777666443321111 0000 0124567778888
Q ss_pred cc------CCCCeeeHHHHHHHHHhcCC----hHHHHHHHHHhHhCCCCCChh--hHHHHHHHhcccCc--HHHHHHHHH
Q 036340 390 MK------LLKNVVSWNAMIGGCASHGF----ATEALELFKSMRSFKVLPTYI--TFISVLSACAHAGL--VEEGRQHFK 455 (579)
Q Consensus 390 ~~------~~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~ 455 (579)
|+ ..++..++..++.. ..++ .+.++.+|+.+.+.|...+.. ....++..+..... ...+.++++
T Consensus 129 mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~ 206 (297)
T PF13170_consen 129 MKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYN 206 (297)
T ss_pred HHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 75 23344445444433 2233 356778888888888777654 33333333222222 447778888
Q ss_pred HhHHhhCCCCCcchhHHHHHH
Q 036340 456 SMVNEYGIEPRIEHFASLVDI 476 (579)
Q Consensus 456 ~~~~~~~~~~~~~~~~~l~~~ 476 (579)
.+.++ ++++....|..++-.
T Consensus 207 ~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 207 ALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHc-CCccccccccHHHHH
Confidence 87655 888877777666543
No 332
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.40 E-value=1.9 Score=41.93 Aligned_cols=127 Identities=14% Similarity=0.073 Sum_probs=88.8
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC--CcchhHHHHHHhhccCChHHHHHHHH
Q 036340 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP--RIEHFASLVDIVGRHGRLEDAMDLIK 491 (579)
Q Consensus 414 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 491 (579)
-+-.++..|.. -+.|-..+.+...-.+...|+...|..++..+.. ..| .......|+..+.+.|...+|-.++.
T Consensus 591 ~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~ 666 (886)
T KOG4507|consen 591 IGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLL 666 (886)
T ss_pred HHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHH
Confidence 34444444432 3344444444444445678999999999887763 344 23345567888888898888888876
Q ss_pred hC-C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhh
Q 036340 492 GM-P-FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544 (579)
Q Consensus 492 ~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 544 (579)
.. . ....+.++..+.+++....+++.|++.++.++++.|+++.+-..|..+-+
T Consensus 667 q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 667 QALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 54 2 23356677888899999999999999999999999999887666654433
No 333
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.37 E-value=30 Score=33.67 Aligned_cols=174 Identities=13% Similarity=0.126 Sum_probs=118.6
Q ss_pred CCcchHHHHHHHHHccCCHHHHHHHhhcCC--CCchhhHHHHHHHHHhcCChhhHHHHHccCCCC--CcchHHHHHHHHH
Q 036340 58 RDCVTWNTVISGYAKTGEMEEALRLFNSMP--ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR--DSASLSALVSGLI 133 (579)
Q Consensus 58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~ 133 (579)
.|....-+++..+++.-++.-.+.+..++. ..+-..|..++.+|..+ .-++-..+++++.+- +......-+..+.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 455678889999999999999999999887 56777899999999988 556777788866552 2233333344444
Q ss_pred hCCCHHHHHHHHHHhccCCCCCCC-----chhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHH
Q 036340 134 QNGELDEAARVLVKCGSRCDGGED-----LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208 (579)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (579)
..++.+.+...|.++..+ -.|. --..|..+...- ..+.+....+..++.. ..|...-...+..+
T Consensus 143 Ekik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt-------~lg~~~~~Vl~qdv 211 (711)
T COG1747 143 EKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQT-------KLGEGRGSVLMQDV 211 (711)
T ss_pred HHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHH-------hhccchHHHHHHHH
Confidence 458888898888887764 2221 112344444322 3567777777777652 33444455667777
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHH
Q 036340 209 IMCYAKAGDVVSAREIFEQMLER---DTFSWNTMISGY 243 (579)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 243 (579)
-.-|....++.+|++++..+++. |..+-..++.-+
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 78888999999999999988764 444444554433
No 334
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.36 E-value=15 Score=30.06 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=71.1
Q ss_pred CCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 036340 154 GGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233 (579)
Q Consensus 154 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 233 (579)
+.++....+..++..+.+.|++..-..++.--. -+|.......+-.+. +....+.++--.|..+=.
T Consensus 24 ~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V------------i~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 24 NIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV------------IPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc------------cCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh
Confidence 667777889999999999999888777775433 444333332222221 222334444334443333
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH
Q 036340 234 FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLEL 282 (579)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 282 (579)
..+..++..+...|++-+|+++.+.....+......++++..+.++...
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHH
Confidence 4566778888999999999999887643333344556666666665433
No 335
>PRK10941 hypothetical protein; Provisional
Probab=87.09 E-value=2 Score=38.38 Aligned_cols=62 Identities=23% Similarity=0.129 Sum_probs=50.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 502 WGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 502 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
.+.+-.++.+.++++.|+.+.+.++.+.|+++.-+.-.+.+|.+.|.+..|..-++...+.-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 34555667888999999999999999999988888888889999999999988887776544
No 336
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.98 E-value=7.2 Score=37.30 Aligned_cols=105 Identities=13% Similarity=0.021 Sum_probs=67.3
Q ss_pred HHHhhhcCCHHHHHHHHHhcc--------CCC---CeeeHHHHHHHHHhcCChHHHHHHHHHhHh-------CCCCCCh-
Q 036340 371 ITMYARCGAIVEARIIFEEMK--------LLK---NVVSWNAMIGGCASHGFATEALELFKSMRS-------FKVLPTY- 431 (579)
Q Consensus 371 ~~~~~~~~~~~~A~~~~~~~~--------~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~p~~- 431 (579)
...+.-.|++.+|.+++.... +.| .-..||.|.-.+.+.|.+..+..+|.+..+ .|+.|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 344555788889988887653 111 122356676666677777776666666553 4555532
Q ss_pred ----------hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhh
Q 036340 432 ----------ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478 (579)
Q Consensus 432 ----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 478 (579)
.+|+ +.-.|...|++-.|.+.|.+.+..+ ..++..|..+++++.
T Consensus 327 ~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 327 FTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCI 380 (696)
T ss_pred eehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 1233 3335678899999999998887643 456678888887764
No 337
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=86.96 E-value=24 Score=32.26 Aligned_cols=48 Identities=10% Similarity=-0.157 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcC---------------CchHHHHHHHHHHhCCC
Q 036340 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVG---------------RWDDANEVRLLMKSNNI 564 (579)
Q Consensus 514 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 564 (579)
+.++|...|+++-+... ......++ .+...| +...|...+......+.
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 56666666666665554 33344444 444444 55666666666655554
No 338
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=86.79 E-value=5.2 Score=35.18 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=73.7
Q ss_pred HHHHHhcc-CCCCeeeHHHHHHHHHh-----cCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccC------------
Q 036340 384 RIIFEEMK-LLKNVVSWNAMIGGCAS-----HGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG------------ 445 (579)
Q Consensus 384 ~~~~~~~~-~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------------ 445 (579)
+..|.... ...|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|..|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 33444443 23345556666665543 3556666677788888899999999999888765422
Q ss_pred ----cHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHH-HHHHHHhC
Q 036340 446 ----LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED-AMDLIKGM 493 (579)
Q Consensus 446 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~ 493 (579)
+-+-++.++++|.. +|+.||.++-..++.++.+.+..-. ..+++-.|
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 22347889999955 5999999999999999999886543 33343333
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.67 E-value=0.53 Score=27.61 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=16.9
Q ss_pred chhhhhhhhhcCCchHHHHHHHHHH
Q 036340 536 YVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
+..|+.+|...|++++|..++++..
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHH
Confidence 5567777777777777777777654
No 340
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=86.64 E-value=54 Score=35.88 Aligned_cols=78 Identities=10% Similarity=0.097 Sum_probs=31.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHH-HHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHh
Q 036340 261 HPDTLTWNAMVSGYAQIGNLELALD-FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339 (579)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (579)
.+|..+-...+.++.+.|....+.. +...+..++...-...+.++...+. +++...+..+.+ .|+...-...+.+
T Consensus 786 D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~a 861 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLA 861 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHH
Confidence 4445555555555555554433322 2222223443333334444444433 233333333332 2333344444444
Q ss_pred ccC
Q 036340 340 SSG 342 (579)
Q Consensus 340 ~~~ 342 (579)
+.+
T Consensus 862 L~~ 864 (897)
T PRK13800 862 LTR 864 (897)
T ss_pred Hhc
Confidence 444
No 341
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.59 E-value=0.81 Score=32.79 Aligned_cols=53 Identities=19% Similarity=0.123 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC--CCCchhhhhhhhhcCCch
Q 036340 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN--STPYVLLYNMYADVGRWD 550 (579)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~ 550 (579)
|......+...+...|++++|++.+-.+++.+|+. ..+-..|+.++.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 44555555666666666666666666666655443 333445555555555433
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.58 E-value=0.61 Score=25.85 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=24.8
Q ss_pred CchhhhhhhhhcCCchHHHHHHHHHHhC
Q 036340 535 PYVLLYNMYADVGRWDDANEVRLLMKSN 562 (579)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (579)
+|..++.+|...|++++|.+.+++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999988654
No 343
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.53 E-value=3.6 Score=29.47 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHH
Q 036340 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALI 371 (579)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 371 (579)
.-++.+-++.+......|++......+++|.+.+++..|.++++..+.....+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3345566666666777888888888888888888888888888875544443444554443
No 344
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.32 E-value=10 Score=27.39 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=42.0
Q ss_pred HHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhH
Q 036340 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333 (579)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 333 (579)
+..+.+.|++++|..+.+...-||...|..|... +.|-.++...-+.+|..+| .|....|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3567788999999998888877888888776554 5666676666676776655 3444444
No 345
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.31 E-value=30 Score=32.68 Aligned_cols=63 Identities=10% Similarity=-0.005 Sum_probs=45.0
Q ss_pred CCchHHHHHHHHhhhcCCHHHHHHHHHhccCCC------CeeeHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036340 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLK------NVVSWNAMIGGCASHGFATEALELFKSMRS 424 (579)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 424 (579)
....++..++....+.|.++.|...+..+.... .+.....-+..+...|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566778888888889888888888775211 344445556667778888889888888776
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.21 E-value=7.7 Score=32.51 Aligned_cols=79 Identities=19% Similarity=0.061 Sum_probs=40.3
Q ss_pred HHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCC--CCCcchhHHHHHHhhccCCh
Q 036340 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI--EPRIEHFASLVDIVGRHGRL 483 (579)
Q Consensus 406 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 483 (579)
+.+.|+ +.|.+.|-++...+.--++.....|.. |....+.+++..++...+.-.+- .+|++.+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334444 556666666655443333333333333 33355666666666655543211 34555666666666666666
Q ss_pred HHH
Q 036340 484 EDA 486 (579)
Q Consensus 484 ~~A 486 (579)
+.|
T Consensus 195 e~A 197 (203)
T PF11207_consen 195 EQA 197 (203)
T ss_pred hhh
Confidence 555
No 347
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.15 E-value=34 Score=33.18 Aligned_cols=97 Identities=8% Similarity=0.039 Sum_probs=66.0
Q ss_pred CCCcc-hhHHHHHHhhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHH--hhcCCHHHHHHHHHHHhhcCCCCCCCchh
Q 036340 464 EPRIE-HFASLVDIVGRHGRLEDAMDLIKGMP-F-EPDKAVWGALLGAC--RVHNNVELAQVAAEALMKVEPENSTPYVL 538 (579)
Q Consensus 464 ~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 538 (579)
.|+.. .-..+.+.+.+.|-..+|...+..+. . +|+...+..++..- ...-+..-+...|+.+......++..|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 34443 33567777778888888888888873 2 34677777776442 22234777888888888766677777777
Q ss_pred hhhhhhhcCCchHHHHHHHHHH
Q 036340 539 LYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
....-...|..+.+-.++-++.
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHhhccCCCcccccHHHHHHH
Confidence 7777778888887777655443
No 348
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.15 E-value=6.2 Score=28.65 Aligned_cols=60 Identities=12% Similarity=0.244 Sum_probs=38.3
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHH
Q 036340 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475 (579)
Q Consensus 414 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 475 (579)
+..+-+..+....+.|++......+++|.+.+++..|.++++.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555666666667788888888888888888888888888887766543 22335655543
No 349
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.87 E-value=1.7 Score=25.37 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhh
Q 036340 500 AVWGALLGACRVHNNVELAQVAAEALMK 527 (579)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 527 (579)
.+++.+...+...|++++|..++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888999999999988875
No 350
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.56 E-value=86 Score=37.22 Aligned_cols=147 Identities=10% Similarity=0.035 Sum_probs=97.1
Q ss_pred HHHHHHHccCCHHHHHHHhhcCC----CCc--hhhHHHHHHHHHhcCChhhHHHHHcc-CCCCCcchHHHHHHHHHhCCC
Q 036340 65 TVISGYAKTGEMEEALRLFNSMP----ARN--VVSWNAMISGFLQNGDVANAIEFFDR-MPGRDSASLSALVSGLIQNGE 137 (579)
Q Consensus 65 ~l~~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 137 (579)
.+..+-.+++.+..|...+++-. +.+ ..-+..+...|...+++|....+... .-. .+....+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~---~sl~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD---PSLYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC---ccHHHHHHHHHhhcc
Confidence 45556678899999999999832 211 22344455588888888888777663 222 233445556677899
Q ss_pred HHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHH-HHHHHhcC
Q 036340 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM-IMCYAKAG 216 (579)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~ 216 (579)
+..|...|+.+.+. .|+....++-++......|.++..+-..+-... ...+....++.+ ..+.-+.+
T Consensus 1465 ~~da~~Cye~~~q~---~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~---------~~se~~~~~~s~~~eaaW~l~ 1532 (2382)
T KOG0890|consen 1465 WADAAACYERLIQK---DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLII---------NRSEEVDELNSLGVEAAWRLS 1532 (2382)
T ss_pred HHHHHHHHHHhhcC---CCccccchhhHHHhhhcccchhHHHhhhcchhh---------ccCHHHHHHHHHHHHHHhhhc
Confidence 99999999999884 455566788888888888888888887766642 223444444433 34446777
Q ss_pred CHHHHHHHHH
Q 036340 217 DVVSAREIFE 226 (579)
Q Consensus 217 ~~~~A~~~~~ 226 (579)
+++.......
T Consensus 1533 qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1533 QWDLLESYLS 1542 (2382)
T ss_pred chhhhhhhhh
Confidence 7777766655
No 351
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.39 E-value=3.4 Score=29.94 Aligned_cols=60 Identities=10% Similarity=0.075 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHH
Q 036340 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALIT 372 (579)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 372 (579)
+..+-++.+....+.|++......+.+|.+.+++..|.++++.++....+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 455556666666778888888888888888888888888888755555554445655543
No 352
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.33 E-value=2.1 Score=37.76 Aligned_cols=59 Identities=14% Similarity=0.004 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHH
Q 036340 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559 (579)
Q Consensus 501 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (579)
+++.....|...|.+.+|.++-++++.++|-+.+.+-.|..++...|+--.|.+.++++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44555677889999999999999999999999999999999999999988888887766
No 353
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.17 E-value=0.53 Score=37.59 Aligned_cols=129 Identities=16% Similarity=0.249 Sum_probs=77.2
Q ss_pred HHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 036340 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI 244 (579)
Q Consensus 165 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 244 (579)
++..+.+.+.+.....+++.+. ..+...+....+.++..|++.++.++..++++.. +..-...++..+.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~--------~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~yd~~~~~~~c~ 81 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALV--------KENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NNYDLDKALRLCE 81 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHH--------HTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SSS-CTHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHH--------hcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cccCHHHHHHHHH
Confidence 5566677777888877887776 3333456778889999999998877777777632 2244455666677
Q ss_pred hcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCc
Q 036340 245 HVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311 (579)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (579)
+.|.++++.-++.++...+.. +..+...++++.|.+++.+. +++..|..++..+...+..
T Consensus 82 ~~~l~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 82 KHGLYEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp TTTSHHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTCT
T ss_pred hcchHHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCcc
Confidence 777777666665554311110 00122333444444333332 4577888888888776653
No 354
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.79 E-value=5.3 Score=33.71 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=50.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHH
Q 036340 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204 (579)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (579)
....+..+.+.+.+.+++...+.-++ ..|.+...-..+++.++-.|+|++|..-++-.... .....+-..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk---akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l------~p~~t~~a~l 74 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK---AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL------SPQDTVGASL 74 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh---cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc------CcccchHHHH
Confidence 34456667777888888888777666 44556666777788888888888887777665421 1223344555
Q ss_pred HHHHHHH
Q 036340 205 WNSMIMC 211 (579)
Q Consensus 205 ~~~l~~~ 211 (579)
|..++.+
T Consensus 75 yr~lir~ 81 (273)
T COG4455 75 YRHLIRC 81 (273)
T ss_pred HHHHHHH
Confidence 6666654
No 355
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.43 E-value=7.2 Score=28.00 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=40.4
Q ss_pred HHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 036340 413 TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474 (579)
Q Consensus 413 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 474 (579)
-++.+-+..+....+.|++......+++|.+.+++..|.++++.+..+.+. +...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 355566666666677788888888888888888888888888876544332 333454443
No 356
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.28 E-value=55 Score=33.87 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=38.3
Q ss_pred HHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCC-------HHHHHHHHHhcCC
Q 036340 162 YNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD-------VVSAREIFEQMLE 230 (579)
Q Consensus 162 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~ 230 (579)
.-.++-.|.+.|++++|.++..... ..+......+...+..|....+ -++....|++...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~---------~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r 180 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENR---------NQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIR 180 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTG---------GGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhh---------hhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhc
Confidence 4467778999999999999995543 2334445566677777766532 2455666666554
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.17 E-value=7.6 Score=32.55 Aligned_cols=77 Identities=17% Similarity=0.050 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcC
Q 036340 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAG 216 (579)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 216 (579)
.-+.|.+.|-.+... +.-.++.....++..|. ..+.++++.++-.+.+.. ..+-.+|+..+.+|+..+.+.|
T Consensus 121 ~d~~A~~~fL~~E~~--~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~-----~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 121 GDQEALRRFLQLEGT--PELETAELQYALATYYT-KRDPEKTIQLLLRALELS-----NPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred CcHHHHHHHHHHcCC--CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc-----CCCCCCCHHHHHHHHHHHHHhc
Confidence 345677777666654 44455666666666665 567888888887776433 2223667778888888888888
Q ss_pred CHHHH
Q 036340 217 DVVSA 221 (579)
Q Consensus 217 ~~~~A 221 (579)
+++.|
T Consensus 193 ~~e~A 197 (203)
T PF11207_consen 193 NYEQA 197 (203)
T ss_pred chhhh
Confidence 88776
No 358
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.11 E-value=60 Score=34.18 Aligned_cols=24 Identities=4% Similarity=0.029 Sum_probs=15.7
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHH
Q 036340 436 SVLSACAHAGLVEEGRQHFKSMVN 459 (579)
Q Consensus 436 ~l~~~~~~~~~~~~a~~~~~~~~~ 459 (579)
.|+......|++++|...+.++..
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455566667777777777666643
No 359
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.06 E-value=2 Score=22.08 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=7.5
Q ss_pred HHHHHHhcCChhhHHHHH
Q 036340 97 MISGFLQNGDVANAIEFF 114 (579)
Q Consensus 97 l~~~~~~~~~~~~A~~~~ 114 (579)
+..++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 333444444444444433
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.72 E-value=12 Score=35.73 Aligned_cols=129 Identities=13% Similarity=0.087 Sum_probs=77.3
Q ss_pred hhcCCHHHHH-HHHHhccC-CCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHH
Q 036340 375 ARCGAIVEAR-IIFEEMKL-LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQ 452 (579)
Q Consensus 375 ~~~~~~~~A~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 452 (579)
...|++..|- +++..+.. +.++.........+...|+++.+...+....+ -+.....+...+++.....|+++.|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~-~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEK-IIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhh-hhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3456666554 44544442 22333333334445668889998888877653 244556688888888888999999988
Q ss_pred HHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-C-CCCCHHHHHHHH
Q 036340 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-P-FEPDKAVWGALL 506 (579)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~ 506 (579)
.-+-|+.. .+ .+++....-+..--..|-++++.-.++++ . .+|....|..++
T Consensus 379 ~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 379 TAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred HHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
Confidence 87777643 22 23333333233334567788888888876 2 234444454444
No 361
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.60 E-value=7.6 Score=34.82 Aligned_cols=102 Identities=9% Similarity=0.079 Sum_probs=62.7
Q ss_pred hcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCee-----eHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh
Q 036340 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV-----SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI 432 (579)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 432 (579)
.|.+....+...++..-....+++.++..+-.+...|+.. +-.+.++.+. .-++++++.++..=+.-|+.||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 3344444444455555555666777776666554233211 1122233333 234667888887777788888888
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNE 460 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 460 (579)
+++.+++.+.+.+++.+|..+.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888887776666544
No 362
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.67 E-value=5.3 Score=34.37 Aligned_cols=61 Identities=10% Similarity=-0.056 Sum_probs=42.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 503 GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 503 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
.+...++...|++-++++....++...|.|..+|+.-+.+....=+.++|.+-|.+..+..
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3344555667777777777777777777777777777777777767777777776665544
No 363
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=82.10 E-value=2.5 Score=35.86 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=27.5
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 511 VHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 511 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
+.+|.+.+.+.|.+++.+-|+....|..++....+.|+++.|...+++..+.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 44455555555555555555555555555555555555555555555544433
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.98 E-value=17 Score=26.37 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=37.4
Q ss_pred hHHHHHHHhhCC-CCC-cc-hHHHHHHHHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCC
Q 036340 45 LEEARYLFDIMP-ERD-CV-TWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMP 118 (579)
Q Consensus 45 ~~~A~~~~~~~~-~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 118 (579)
.++|..+-+-+. .++ .. +--+-+..+.++|+|++|..+.+...-||...|.+|-. .+.|-.+++..-+.++.
T Consensus 21 HqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 556655544443 221 11 11222345567777777777777776677766655432 34444444444444443
No 365
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.60 E-value=30 Score=32.57 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=13.8
Q ss_pred CchHHHHHHHHhhhcCCHHHHHHHHHhcc
Q 036340 363 DVPINNALITMYARCGAIVEARIIFEEMK 391 (579)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 391 (579)
.+.+...+..-|. +++..+.+++++++
T Consensus 305 ~Pqlr~il~~fy~--sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 305 EPQLREILFKFYS--SKYASCLELLREIK 331 (466)
T ss_pred ChHHHHHHHHHhh--hhHHHHHHHHHHhc
Confidence 3344444443333 45666666666664
No 366
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.60 E-value=1.4 Score=35.16 Aligned_cols=83 Identities=19% Similarity=0.160 Sum_probs=45.9
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 036340 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVEL 517 (579)
Q Consensus 438 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 517 (579)
+..+.+.+.+.....+++.+... +...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~----yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN----YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS----S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHcccccc----cCHHHHHHHHHhcchHHH
Confidence 44555566666666666666543 3334456666677777777666666666664321 222344555556666666
Q ss_pred HHHHHHHH
Q 036340 518 AQVAAEAL 525 (579)
Q Consensus 518 A~~~~~~~ 525 (579)
+..+|.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 66666553
No 367
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.46 E-value=17 Score=34.38 Aligned_cols=130 Identities=15% Similarity=0.252 Sum_probs=0.0
Q ss_pred hcccCcHHHHHHHHHHhHHhhCCCCC------------cchhHHHHHHhhccCChHHHHHHHHhC---------------
Q 036340 441 CAHAGLVEEGRQHFKSMVNEYGIEPR------------IEHFASLVDIVGRHGRLEDAMDLIKGM--------------- 493 (579)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------- 493 (579)
+.....+.++...|..++. ...|+ +.++..+..++.++|+.+.|.++++++
T Consensus 4 f~hs~~Y~~~q~~F~~~v~--~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~ 81 (360)
T PF04910_consen 4 FEHSKAYQEAQEQFYAAVQ--SHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPF 81 (360)
T ss_pred EeCCHHHHHHHHHHHHHHH--ccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred -------------CCCCCHHHHHHHH---HHHhhcCCHHHHHHHHHHHhhcCCC-CCCCchhhhhhhh-hcCCchHHHHH
Q 036340 494 -------------PFEPDKAVWGALL---GACRVHNNVELAQVAAEALMKVEPE-NSTPYVLLYNMYA-DVGRWDDANEV 555 (579)
Q Consensus 494 -------------~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~ 555 (579)
...-|...|.++. ..+.+.|-+..|.+..+-++.++|. ||......+..|. +.+.++=-..+
T Consensus 82 ~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~ 161 (360)
T PF04910_consen 82 RSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDF 161 (360)
T ss_pred hcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHH
Q ss_pred HHHHHhCCCCC----CCccee
Q 036340 556 RLLMKSNNIKK----PTGYSW 572 (579)
Q Consensus 556 ~~~~~~~~~~~----~~~~~~ 572 (579)
.+.......+. .|++++
T Consensus 162 ~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 162 SESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHhHhhhhhhhhhhhCccHHH
No 368
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.07 E-value=42 Score=34.19 Aligned_cols=148 Identities=15% Similarity=0.050 Sum_probs=72.3
Q ss_pred cCChHHHHHHHHHhHh-------CCCCCChhhHHHHHHHhccc----C-cHHHHHHHHHHhHHhhCCCCCcchhHHHHHH
Q 036340 409 HGFATEALELFKSMRS-------FKVLPTYITFISVLSACAHA----G-LVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476 (579)
Q Consensus 409 ~~~~~~A~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 476 (579)
..|.+.|+.+|+.+.+ .|. ......+..+|.+. . +.+.|..++...... + .|+.. ..++.+
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~--~~lg~~ 334 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQ--YLLGVL 334 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHH--HHHHHH
Confidence 4566666666666655 342 22333344444432 2 556677777666432 2 22222 223333
Q ss_pred hhcc---CChHHHHHHHHhCCCCCCHHHHHHHHHHHh----hcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhc-CC
Q 036340 477 VGRH---GRLEDAMDLIKGMPFEPDKAVWGALLGACR----VHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADV-GR 548 (579)
Q Consensus 477 ~~~~---g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~ 548 (579)
+... .+...|..+|..+...-....+..+...+. ...+.+.|...++++.+.++ +.+...++..+... ++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHcccc
Confidence 3322 345677777766632223333333332221 23366777777777776663 23233333332222 66
Q ss_pred chHHHHHHHHHHhCCCC
Q 036340 549 WDDANEVRLLMKSNNIK 565 (579)
Q Consensus 549 ~~~A~~~~~~~~~~~~~ 565 (579)
++.+.-.+..+.+.|..
T Consensus 413 ~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 413 YDTALALYLYLAELGYE 429 (552)
T ss_pred ccHHHHHHHHHHHhhhh
Confidence 66666666665555543
No 369
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=79.22 E-value=7.9 Score=33.34 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=20.2
Q ss_pred CchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 535 PYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
..+.++.+..+.|++++|.+.+.++...+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 45566777777777777777777776444
No 370
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.97 E-value=17 Score=32.69 Aligned_cols=102 Identities=13% Similarity=0.038 Sum_probs=70.2
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCc
Q 036340 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200 (579)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 200 (579)
...+...++..-.+..+++.++..+-+++........-..+-.++++.+.+ -+.++++.++..-+ ..|+-|
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npI--------qYGiF~ 133 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPI--------QYGIFP 133 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcc--------hhcccc
Confidence 334445555555567788888888877765311111111123344444443 36779999988887 789999
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 036340 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 231 (579)
|..+++.+++.+.+.+++..|.++.-.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777543
No 371
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=78.77 E-value=2.4 Score=40.24 Aligned_cols=95 Identities=11% Similarity=0.107 Sum_probs=68.5
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHhhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCC
Q 036340 438 LSACAHAGLVEEGRQHFKSMVNEYGIEPRI-EHFASLVDIVGRHGRLEDAMDLIKGM-PFEPD-KAVWGALLGACRVHNN 514 (579)
Q Consensus 438 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~ 514 (579)
+......+.++.|..++.+++ .+.|+- ..|..-..++.+.+++..|+.-+.++ +..|. ...|..-+.++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 445667788999999999887 457754 44444557788889988888765554 55553 3344444566777788
Q ss_pred HHHHHHHHHHHhhcCCCCCCC
Q 036340 515 VELAQVAAEALMKVEPENSTP 535 (579)
Q Consensus 515 ~~~A~~~~~~~~~~~p~~~~~ 535 (579)
+.+|...|+....+.|+++.+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHH
Confidence 888999999999999998763
No 372
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.37 E-value=13 Score=30.48 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=11.0
Q ss_pred HHHHHHHHhHhCCCCCChh-hHHHHHHHhc
Q 036340 414 EALELFKSMRSFKVLPTYI-TFISVLSACA 442 (579)
Q Consensus 414 ~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~ 442 (579)
+|+.-|++.+ .+.|+.. ++..+..+|.
T Consensus 53 dAisK~eeAL--~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 53 DAISKFEEAL--KINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHH--HH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCchHHHHHHHHHHHH
Confidence 3444444444 2445543 4544444443
No 373
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=78.04 E-value=2 Score=23.20 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCchhhhh
Q 036340 513 NNVELAQVAAEALMKVEPENSTPYVLLYN 541 (579)
Q Consensus 513 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 541 (579)
|+.+.+..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877776665544
No 374
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=77.70 E-value=1.2e+02 Score=33.41 Aligned_cols=254 Identities=10% Similarity=-0.008 Sum_probs=148.4
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCCh-hhHHHHHccCCCCCcchHH
Q 036340 48 ARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDV-ANAIEFFDRMPGRDSASLS 126 (579)
Q Consensus 48 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 126 (579)
...+.+.+..+|+.+-...+..+.+.+..+....+...+.+++...-...+.++.+.+.. .....+...+..+++..-.
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~ 702 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRA 702 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHH
Confidence 334555555888888888888888877755444444444466666555555555544322 1112222233345665555
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHH
Q 036340 127 ALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWN 206 (579)
Q Consensus 127 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (579)
..+..+...+..+ . ..+-.++. .++...-...+.++.+.+..+. +...+. .++..+-.
T Consensus 703 ~A~~aL~~~~~~~-~-~~l~~~L~-----D~d~~VR~~Av~aL~~~~~~~~---l~~~l~------------D~~~~VR~ 760 (897)
T PRK13800 703 AALDVLRALRAGD-A-ALFAAALG-----DPDHRVRIEAVRALVSVDDVES---VAGAAT------------DENREVRI 760 (897)
T ss_pred HHHHHHHhhccCC-H-HHHHHHhc-----CCCHHHHHHHHHHHhcccCcHH---HHHHhc------------CCCHHHHH
Confidence 5666665443211 1 22333333 3344455556666666655433 222232 55667777
Q ss_pred HHHHHHHhcCCHHH-HHHHHHhc-CCCChhHHHHHHHHHHhcCChHHHHHHhhc-CCCCChhhHHHHHHHHHhcCCHHHH
Q 036340 207 SMIMCYAKAGDVVS-AREIFEQM-LERDTFSWNTMISGYIHVLDMEEASNLFVK-MPHPDTLTWNAMVSGYAQIGNLELA 283 (579)
Q Consensus 207 ~l~~~~~~~~~~~~-A~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A 283 (579)
..+.++...+..+. +...+..+ .++|+..-...+.++...|....+...+.. +..++..+-...+.++.+.+..+..
T Consensus 761 ~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~ 840 (897)
T PRK13800 761 AVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAV 840 (897)
T ss_pred HHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchH
Confidence 77777777765443 33444444 456878888888888888877655433333 3367777777778888888775555
Q ss_pred HHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHH
Q 036340 284 LDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323 (579)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (579)
..+...+..++...-...+.++.+......+...+....+
T Consensus 841 ~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 841 PALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5555555567777777777777665444567777776665
No 375
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.54 E-value=65 Score=30.46 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCC-CCCCccCCcch
Q 036340 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDR-GEGNVRFKRNI 202 (579)
Q Consensus 124 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 202 (579)
.+.-+...|...|+++.|++.|.++..-.-........|..++..-.-.|+|.....+..++.+.... ......+++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 45668888999999999999999966543223334556777788778889998888888777633100 00012234444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q 036340 203 VSWNSMIMCYAKAGDVVSAREIFEQ 227 (579)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~ 227 (579)
..+..+.....+ ++..|.+.|-.
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~ 254 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLL 254 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHh
Confidence 444445444433 56666555543
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.74 E-value=4.4 Score=27.79 Aligned_cols=48 Identities=21% Similarity=0.193 Sum_probs=34.8
Q ss_pred hCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHH
Q 036340 134 QNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKL 181 (579)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 181 (579)
.+.+.++|+..++.+++.....+.-..++..++.+++..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888899999888886434333345667778888888888877654
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.80 E-value=5.5 Score=23.84 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcC
Q 036340 300 SMIAGCETNKDYEGAIKLFIQMQVEG 325 (579)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (579)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46677888888888888888877544
No 378
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.60 E-value=39 Score=26.88 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=9.4
Q ss_pred hhhcCCHHHHHHHHHhcc
Q 036340 374 YARCGAIVEARIIFEEMK 391 (579)
Q Consensus 374 ~~~~~~~~~A~~~~~~~~ 391 (579)
+...|++++|..+|+++.
T Consensus 54 ~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 54 LIARGNYDEAARILRELL 71 (153)
T ss_pred HHHcCCHHHHHHHHHhhh
Confidence 444455555555555554
No 379
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=75.50 E-value=6.7 Score=28.43 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=33.2
Q ss_pred hhcCCHHHHHHHHHHHhhcCCCC---------CCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 510 RVHNNVELAQVAAEALMKVEPEN---------STPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 510 ~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
.+.||+..|.+.+.+..+..... ..+...++.++...|++++|...+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35677777777666666432221 1234556777788888888888888765
No 380
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=75.05 E-value=1.1e+02 Score=31.97 Aligned_cols=109 Identities=9% Similarity=0.059 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHH-hcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHH
Q 036340 412 ATEALELFKSMRSFKVLPTYITFISVLSA-CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490 (579)
Q Consensus 412 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 490 (579)
+..|...|.+..+....+...+....... +...++++.+..+|+.+... +...-...|...+..-...|+...+..++
T Consensus 442 F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty-~~~~iag~Wle~~~lE~~~g~~~~~R~~~ 520 (881)
T KOG0128|consen 442 FNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTY-GGGSIAGKWLEAINLEREYGDGPSARKVL 520 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccC-CcchHHHHHHHHHhHHHHhCCchhHHHHH
Confidence 45666666666543333333333333332 34567899999999887643 21111124555555556678888898887
Q ss_pred HhCC---CCCCH--HHHHHHHHHHhhcCCHHHHHHH
Q 036340 491 KGMP---FEPDK--AVWGALLGACRVHNNVELAQVA 521 (579)
Q Consensus 491 ~~~~---~~~~~--~~~~~l~~~~~~~~~~~~A~~~ 521 (579)
+.+- ..|+. ..+..+.+.-...|.++.....
T Consensus 521 R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 521 RKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLC 556 (881)
T ss_pred HHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhh
Confidence 7762 33431 1233333334455666655443
No 381
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.41 E-value=40 Score=30.22 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 036340 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279 (579)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 279 (579)
-++.....++..+.+.|++..|+..|-.-.+++...+..++......|...++ |...-.+ +-.|.-.++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----------dlfi~Ra-VL~yL~l~n 156 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----------DLFIARA-VLQYLCLGN 156 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------HHHHHHH-HHHHHHTTB
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------hHHHHHH-HHHHHHhcC
Confidence 36778888999999999999999888665444444443455444445554432 2222222 233555677
Q ss_pred HHHHHHHHcc
Q 036340 280 LELALDFFKR 289 (579)
Q Consensus 280 ~~~A~~~~~~ 289 (579)
...|...++.
T Consensus 157 ~~~A~~~~~~ 166 (260)
T PF04190_consen 157 LRDANELFDT 166 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 382
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.09 E-value=65 Score=28.78 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhH
Q 036340 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTF 333 (579)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 333 (579)
.+.+-..+.+++++|+..|.++...|+..+..+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 3455567788999999999999988887765544
No 383
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.86 E-value=26 Score=30.29 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=72.5
Q ss_pred HHhcCChHHHHHHHHHhHhCCCCCChhh-HHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHhhccCCh
Q 036340 406 CASHGFATEALELFKSMRSFKVLPTYIT-FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRI-EHFASLVDIVGRHGRL 483 (579)
Q Consensus 406 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 483 (579)
|....++..|+..|.+.+ -+.|+..+ |..=+.++.+..+++.+..=..+.+ .+.|+. ....-+...+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI--~~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI--CINPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHH--hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 445567888888888777 46788754 4455567778888888877766665 456653 3444566677778888
Q ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 036340 484 EDAMDLIKGM-------PFEPDKAVWGALLGACRVHNNVELAQVAAE 523 (579)
Q Consensus 484 ~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 523 (579)
++|+..+.+. +..+....+..|..+-.+.=...+..++.+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 8888887766 344455566666655333333444444433
No 384
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=73.57 E-value=10 Score=29.26 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=38.6
Q ss_pred CCCcchhHHHHHHhhccCChHH---HHHHHHhC-C-CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC
Q 036340 464 EPRIEHFASLVDIVGRHGRLED---AMDLIKGM-P-FEP--DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534 (579)
Q Consensus 464 ~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 534 (579)
.++..+-..++.++.+..+.++ -+.++++. + ..| ...-..-+.-++.+.++++.++++.+.+++.+|+|.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 3444555555666665554433 33344443 1 222 1222333445566777777777777777777777654
No 385
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=73.31 E-value=96 Score=30.36 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=39.8
Q ss_pred CCcchHHHHHHHHHccCCHHHHHHHhhcCC---CCchhhHHHHHHH-HHhcCChhhHHHHHccCCC
Q 036340 58 RDCVTWNTVISGYAKTGEMEEALRLFNSMP---ARNVVSWNAMISG-FLQNGDVANAIEFFDRMPG 119 (579)
Q Consensus 58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~ 119 (579)
.|+..|..-+..+.+.+.+.+.-.+|.+|. +.++..|-.-... |-.+.+++.|..+|....+
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 477777777777777777778888887776 3344444333322 3334447788888777655
No 386
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.59 E-value=1.4e+02 Score=32.01 Aligned_cols=130 Identities=12% Similarity=0.130 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 036340 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 283 (579)
-|..|+..|...|+.++|++++.+..+.+..+-.. ....++.-+++++....++....-.... +.-..+.+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~------~~~~~e~ii~YL~~l~~~~~~Li~~y~~-wvl~~~p~~g 578 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF------QLDGLEKIIEYLKKLGAENLDLILEYAD-WVLNKNPEAG 578 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc------hhhhHHHHHHHHHHhcccchhHHHHHhh-hhhccCchhh
Confidence 46777888888888888888887776532100000 0011122333333333232221111111 1123344555
Q ss_pred HHHHccCCCCChhhH-HHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhc
Q 036340 284 LDFFKRMPQKNLVSW-NSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340 (579)
Q Consensus 284 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (579)
.++|..-......+. ...+-.|......+-++.+++.+....-.++..-.+.++..|
T Consensus 579 i~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly 636 (877)
T KOG2063|consen 579 IQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLY 636 (877)
T ss_pred eeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHH
Confidence 555544111000110 112233455666677777777776555455555555555444
No 387
>PF13934 ELYS: Nuclear pore complex assembly
Probab=71.66 E-value=69 Score=27.98 Aligned_cols=101 Identities=19% Similarity=0.242 Sum_probs=58.5
Q ss_pred HHHHHHH--HHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCCC--CcchHHHHHHHHHhCCCH
Q 036340 63 WNTVISG--YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR--DSASLSALVSGLIQNGEL 138 (579)
Q Consensus 63 ~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 138 (579)
|...+.+ +...+++++|.+.+-.-.-+ +.-...++.++...|+...|+.+++....+ +......++.. ..++.+
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v 156 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLV 156 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCH
Confidence 4444444 34557788888877443211 111234677777788888888888876553 22223333333 667888
Q ss_pred HHHHHHHHHhccCCCCCCCchhhHHHHHHHHh
Q 036340 139 DEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG 170 (579)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (579)
.+|...-+..... .....+..++..+.
T Consensus 157 ~EAf~~~R~~~~~-----~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 157 TEAFSFQRSYPDE-----LRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHhCchh-----hhHHHHHHHHHHHH
Confidence 8888887775542 11234555555554
No 388
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=71.30 E-value=14 Score=20.91 Aligned_cols=29 Identities=10% Similarity=-0.145 Sum_probs=14.9
Q ss_pred HHHHHHHhhcCCHHHHHHH--HHHHhhcCCC
Q 036340 503 GALLGACRVHNNVELAQVA--AEALMKVEPE 531 (579)
Q Consensus 503 ~~l~~~~~~~~~~~~A~~~--~~~~~~~~p~ 531 (579)
-.+...+...|++++|+.+ |+-+..++|.
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3344445566666666666 3355544443
No 389
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.18 E-value=10 Score=26.08 Aligned_cols=45 Identities=11% Similarity=-0.016 Sum_probs=22.5
Q ss_pred cCChHHHHHHHHHhHhCCCCCC-hh-hHHHHHHHhcccCcHHHHHHH
Q 036340 409 HGFATEALELFKSMRSFKVLPT-YI-TFISVLSACAHAGLVEEGRQH 453 (579)
Q Consensus 409 ~~~~~~A~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~ 453 (579)
..+.++|+..|....+.-..|. .. ++..++.+|+..|++.+++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666655554332221 11 455555566666666555544
No 390
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.16 E-value=74 Score=28.70 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred hhhHHHHHc-----cCCCCCcchHHHHHHHHHh-CCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHH
Q 036340 107 VANAIEFFD-----RMPGRDSASLSALVSGLIQ-NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARK 180 (579)
Q Consensus 107 ~~~A~~~~~-----~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 180 (579)
+.+|+.+|+ +..=.|......+++.... .+.--.|.--+-.......+..++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHccccccCCCCCCCc-cCCcchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 036340 181 LFDKIPVNCDRGEGNV-RFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227 (579)
Q Consensus 181 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 227 (579)
+++... .. +...|...|..+++.....|+..-..++.+.
T Consensus 224 fW~~~~--------~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCI--------PNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhc--------ccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
No 391
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.05 E-value=19 Score=25.43 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=31.5
Q ss_pred HHHhhCCCCCcchHHHHHHHHH---ccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhH
Q 036340 50 YLFDIMPERDCVTWNTVISGYA---KTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANA 110 (579)
Q Consensus 50 ~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 110 (579)
++++...+.+..|....=..-. ..|+.+.|.+++..+. ..+..|..++.++-..|.-+-|
T Consensus 23 ~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 23 DVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3444444444444443333333 4466666666666666 5555666666666655554433
No 392
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=70.94 E-value=86 Score=28.79 Aligned_cols=51 Identities=10% Similarity=0.296 Sum_probs=27.3
Q ss_pred HHHHHHHHHhHhCCCCCChhhHHHHHHHhc--ccC----cHHHHHHHHHHhHHhhCC
Q 036340 413 TEALELFKSMRSFKVLPTYITFISVLSACA--HAG----LVEEGRQHFKSMVNEYGI 463 (579)
Q Consensus 413 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~~----~~~~a~~~~~~~~~~~~~ 463 (579)
++.+.+++.|.+.|..-+..+|........ ... ....|..+|+.|.+++.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f 135 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF 135 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc
Confidence 345566677777766666555544222211 122 344566777777665443
No 393
>PRK10941 hypothetical protein; Provisional
Probab=70.80 E-value=12 Score=33.48 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=39.5
Q ss_pred HHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC
Q 036340 472 SLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534 (579)
Q Consensus 472 ~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 534 (579)
.+-.+|.+.++++.|+.+.+.+ ...| ++.-+.--+-.|.+.|.+..|..-++.-++..|+++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 3445566667777777666665 3334 4445555555666677777777777777777776665
No 394
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=70.18 E-value=19 Score=25.37 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=27.7
Q ss_pred HHHHHhcCCCChhHHHHHHHHHH---hcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 036340 222 REIFEQMLERDTFSWNTMISGYI---HVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELA 283 (579)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 283 (579)
.++++.+++.+..+....-..-. ..|+.+.|.+++..+. ..+..|..++.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 34445555544443332222222 3355555555555554 4444455555555555444333
No 395
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=69.84 E-value=34 Score=25.63 Aligned_cols=27 Identities=7% Similarity=0.134 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHH
Q 036340 297 SWNSMIAGCETNKDYEGAIKLFIQMQV 323 (579)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (579)
-|..|+..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588899999999999999999999876
No 396
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.66 E-value=15 Score=32.77 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
+......|...|.+.+|.++.+..+. -.|.+...+-.++..+...||--.+.+.++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt---ldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT---LDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh---cChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44556788899999999999999998 667888889999999999999777777766653
No 397
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.87 E-value=21 Score=27.71 Aligned_cols=71 Identities=15% Similarity=0.028 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHhh-cCCCC-CCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCC
Q 036340 496 EPDKAVWGALLGACRVHN---NVELAQVAAEALMK-VEPEN-STPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566 (579)
Q Consensus 496 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 566 (579)
.+...+--.+.+++.... |..+.+.+++.+.+ -.|.. ....+.|+-.+.+.|+|++++.+.+.+.+....+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 455556666777776554 56778888998886 44443 3457788889999999999999999988766543
No 398
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=67.06 E-value=27 Score=33.34 Aligned_cols=94 Identities=10% Similarity=0.037 Sum_probs=61.5
Q ss_pred CCCcchHHHHHHHHHccCCHHHHHHHhhcCCCCc----------------hhhHHHHHHHHHhcCChhhHHHHHccCCC-
Q 036340 57 ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARN----------------VVSWNAMISGFLQNGDVANAIEFFDRMPG- 119 (579)
Q Consensus 57 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 119 (579)
-.+......++..+....++.+-++..+....|+ -.+...|++.++-.||+..|+++++.+.-
T Consensus 72 ~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~ 151 (404)
T PF10255_consen 72 VWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLN 151 (404)
T ss_pred cccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcc
Confidence 3566665666666666666666666555533211 12334456777778888888888777642
Q ss_pred ----------CCcchHHHHHHHHHhCCCHHHHHHHHHHhcc
Q 036340 120 ----------RDSASLSALVSGLIQNGELDEAARVLVKCGS 150 (579)
Q Consensus 120 ----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 150 (579)
-...++..+.-+|.-.+++.+|.++|...+-
T Consensus 152 ~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 152 KKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred cchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1345667777888888889999888888654
No 399
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.57 E-value=64 Score=28.85 Aligned_cols=85 Identities=11% Similarity=-0.097 Sum_probs=51.0
Q ss_pred HHHHhhhcCCHHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHH-----h
Q 036340 370 LITMYARCGAIVEARIIFEEMKLLK---NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA-----C 441 (579)
Q Consensus 370 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-----~ 441 (579)
=|.++...+++.++....-+.-..| .+.....-|-.|.+.+.+..+.++-..-...--+-+...|..++.. +
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 4677777888888776554432122 2334455566677888888877777776643222222346555543 4
Q ss_pred cccCcHHHHHHHH
Q 036340 442 AHAGLVEEGRQHF 454 (579)
Q Consensus 442 ~~~~~~~~a~~~~ 454 (579)
.-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 4578888887775
No 400
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.20 E-value=51 Score=24.41 Aligned_cols=98 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHcCCCCChHHHHHHHhhCC-CCCcchHHHHHH--HHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHH
Q 036340 35 GYISSRGSGFLEEARYLFDIMP-ERDCVTWNTVIS--GYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAI 111 (579)
Q Consensus 35 ~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 111 (579)
++...|+ ...++|..+.+-+. .++..-...+|. .+.++|+|++|+..=.....||...|.+| +-.+.|-.+++.
T Consensus 13 AL~atG~-HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL--~a~klGL~~~~e 89 (116)
T PF09477_consen 13 ALMATGH-HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAAL--CAWKLGLASALE 89 (116)
T ss_dssp HHHHHTT-T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHH--HHHHCT-HHHHH
T ss_pred HHHHhhh-HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHH--HHHhhccHHHHH
Q ss_pred HHHccCCCCCcchHHHHHHHHHhC
Q 036340 112 EFFDRMPGRDSASLSALVSGLIQN 135 (579)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~ 135 (579)
..+.++...+.........++..+
T Consensus 90 ~~l~rla~~g~~~~q~Fa~~~~~~ 113 (116)
T PF09477_consen 90 SRLTRLASSGSPELQAFAAGFREQ 113 (116)
T ss_dssp HHHHHHCT-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
No 401
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=65.66 E-value=2.1e+02 Score=31.29 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=59.1
Q ss_pred HHHHHHHHccCCHHHHHHHhhcCCC--C-chhhHHHH-------HHHHHhcC---ChhhHHHHHccCCCCCcc--hHHHH
Q 036340 64 NTVISGYAKTGEMEEALRLFNSMPA--R-NVVSWNAM-------ISGFLQNG---DVANAIEFFDRMPGRDSA--SLSAL 128 (579)
Q Consensus 64 ~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------~~~~~~~~---~~~~A~~~~~~~~~~~~~--~~~~l 128 (579)
-++=+++.....|+.|+..|+++.. | ....|.++ +.-....| .+++|+..|+.+-..... -|..-
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGK 558 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhH
Confidence 3444566677778888888887761 2 12223222 11112223 477888888887654333 35555
Q ss_pred HHHHHhCCCHHHHHHHHHHhccCCCCCCCc
Q 036340 129 VSGLIQNGELDEAARVLVKCGSRCDGGEDL 158 (579)
Q Consensus 129 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 158 (579)
+-+|-+.|++++-++.+..+.++.+..|.-
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 566778899999999999888876555543
No 402
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.57 E-value=14 Score=33.58 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=58.2
Q ss_pred HHHhhccCChHHHHHHHHhC--C--CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcC
Q 036340 474 VDIVGRHGRLEDAMDLIKGM--P--FEP--DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547 (579)
Q Consensus 474 ~~~~~~~g~~~~A~~~~~~~--~--~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 547 (579)
+.-|.+..++..|...|.+. . -.| +...|.+-..+-...|++..|+.-..++++.+|.+..++..=+.++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 34455666777777766654 1 122 34456555555566788888888888888888888888888888888888
Q ss_pred CchHHHHHHHH
Q 036340 548 RWDDANEVRLL 558 (579)
Q Consensus 548 ~~~~A~~~~~~ 558 (579)
++++|....++
T Consensus 168 ~~~~a~nw~ee 178 (390)
T KOG0551|consen 168 RFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHhh
Confidence 86666555443
No 403
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=64.56 E-value=1.4e+02 Score=28.79 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC----------------hhHHHHHHHHHHhcCChHHHHHHhhcCC---------
Q 036340 206 NSMIMCYAKAGDVVSAREIFEQMLERD----------------TFSWNTMISGYIHVLDMEEASNLFVKMP--------- 260 (579)
Q Consensus 206 ~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------- 260 (579)
..++..+....++.+-++..+...+++ -.+...+++.++-.||+..|+++++.+.
T Consensus 79 LnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~ 158 (404)
T PF10255_consen 79 LNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTK 158 (404)
T ss_pred HHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhcc
Confidence 344455555566655555555543321 1233445566777777777777777665
Q ss_pred --CCChhhHHHHHHHHHhcCCHHHHHHHHccC
Q 036340 261 --HPDTLTWNAMVSGYAQIGNLELALDFFKRM 290 (579)
Q Consensus 261 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 290 (579)
.-...++..++-+|...+++.+|.+.|..+
T Consensus 159 V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 159 VPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred CcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112335555666677777777777777653
No 404
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=64.40 E-value=2e+02 Score=30.61 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=25.8
Q ss_pred cCCHHHHHHHHHhcc-------CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036340 377 CGAIVEARIIFEEMK-------LLKNVVSWNAMIGGCASHGFATEALELFKSMRS 424 (579)
Q Consensus 377 ~~~~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 424 (579)
.|+++.|.++.+... ..+....+..+..+..-.|++++|..+.++..+
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 456666655555432 122333445555555666777776666655543
No 405
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.05 E-value=30 Score=26.43 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHH
Q 036340 314 AIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALI 371 (579)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 371 (579)
..+-++.+..-++.|++......+.+|.+.+++..|..+++-.+....+...+|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3444555566677888888888888888888888888888876655555544554443
No 406
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.72 E-value=48 Score=33.98 Aligned_cols=165 Identities=16% Similarity=0.235 Sum_probs=83.7
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhccCCCCee----------eHHHHHHHHHhcCChHHHHHHHHHhHhCC--CCCChh
Q 036340 365 PINNALITMYARCGAIVEARIIFEEMKLLKNVV----------SWNAMIGGCASHGFATEALELFKSMRSFK--VLPTYI 432 (579)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~ 432 (579)
.+...++-.|....+++...++.+.++.-||.. .|.-.++--.+-|+-++|+...-.+.+.. +.||..
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~ 281 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMY 281 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCcee
Confidence 334455666666677777777777665333211 12112222223467777777766665432 445543
Q ss_pred hHH-----H--HHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCC-hHHHHHHHH------hC-CCCC
Q 036340 433 TFI-----S--VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR-LEDAMDLIK------GM-PFEP 497 (579)
Q Consensus 433 ~~~-----~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~------~~-~~~~ 497 (579)
+.. - +...|...+..+.|.+.|++.. .+.|....-..++..+...|. ++...++-. .+ +.+-
T Consensus 282 Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG 358 (1226)
T KOG4279|consen 282 CLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKG 358 (1226)
T ss_pred eeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccc
Confidence 221 1 1123455667777888887665 456654333333333333332 222221110 00 1111
Q ss_pred C---HHH-H--HHHHHHHhhcCCHHHHHHHHHHHhhcCCCC
Q 036340 498 D---KAV-W--GALLGACRVHNNVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 498 ~---~~~-~--~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 532 (579)
. ... | ...+.+-.-.+|+.+|++..+.+.++.|..
T Consensus 359 ~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 359 ALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 0 001 1 122334456789999999999999999874
No 407
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.52 E-value=7.2 Score=24.54 Aligned_cols=31 Identities=10% Similarity=-0.009 Sum_probs=24.7
Q ss_pred chhhhhhhhhcCCchHHHHHHHHHHhCCCCC
Q 036340 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566 (579)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 566 (579)
++.++.++.+.|++++|.++.+.+.+..+.+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 4677889999999999999999998766543
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.30 E-value=23 Score=29.99 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCC
Q 036340 494 PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530 (579)
Q Consensus 494 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 530 (579)
...|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3567888888888888888888888888888888777
No 409
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.13 E-value=1.6e+02 Score=28.90 Aligned_cols=104 Identities=10% Similarity=-0.047 Sum_probs=56.8
Q ss_pred ChHHHHHHHhhCCC--CCc----chHHHHHHHH-HccCCHHHHHHHhhcCC-----CCc-----hhhHHHHHHHHHhcC-
Q 036340 44 FLEEARYLFDIMPE--RDC----VTWNTVISGY-AKTGEMEEALRLFNSMP-----ARN-----VVSWNAMISGFLQNG- 105 (579)
Q Consensus 44 ~~~~A~~~~~~~~~--~~~----~~~~~l~~~~-~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~l~~~~~~~~- 105 (579)
....+++.++...+ +.. .+.-.+...+ .-..+++.|..-++... -|+ -.+++.|...|....
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~ 103 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ 103 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence 36666666665542 111 2222222222 22355555555554432 122 235666777777655
Q ss_pred ChhhHHHHHccCCC--CCcchH-----HHHHHHHHhCCCHHHHHHHHHH
Q 036340 106 DVANAIEFFDRMPG--RDSASL-----SALVSGLIQNGELDEAARVLVK 147 (579)
Q Consensus 106 ~~~~A~~~~~~~~~--~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~ 147 (579)
.+..+..++++..+ .+...| ..+++......++..|.+.+.-
T Consensus 104 s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLav 152 (629)
T KOG2300|consen 104 SFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAV 152 (629)
T ss_pred CCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhc
Confidence 77777777777653 222233 3466667778888888888654
No 410
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.98 E-value=44 Score=29.13 Aligned_cols=64 Identities=8% Similarity=0.098 Sum_probs=43.0
Q ss_pred hhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC
Q 036340 469 HFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 469 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 532 (579)
.+..+..++...|++-++++...+. ...| +...|-.-..+....=+..+|..-+.++++++|.-
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 4455566777777777777776665 3333 55666666666666667777888888888887763
No 411
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=62.80 E-value=30 Score=30.76 Aligned_cols=55 Identities=25% Similarity=0.168 Sum_probs=49.0
Q ss_pred HHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHh
Q 036340 507 GACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561 (579)
Q Consensus 507 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (579)
.++...++++.|....++.+.++|+++..+.--+.+|.+.|.+.-|.+-+....+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 5577889999999999999999999998889999999999999999988887554
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.09 E-value=23 Score=29.98 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=21.8
Q ss_pred CCCCCcchhHHHHHHhhccCChHHHHHHHHhC
Q 036340 462 GIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 462 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 493 (579)
...|++.++..++.++...|+.++|.+...++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44667777777777777777777776666665
No 413
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=61.76 E-value=17 Score=31.13 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=31.5
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC
Q 036340 478 GRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533 (579)
Q Consensus 478 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 533 (579)
.+.|+.+.|.+++.+. ...| ....|-.+...--+.|+++.|...|++.++++|++.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3455555555555544 2222 444555555555566666666666666666666553
No 414
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.18 E-value=66 Score=24.93 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=24.4
Q ss_pred HHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHH
Q 036340 414 EALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKS 456 (579)
Q Consensus 414 ~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 456 (579)
.+.++|..|...|+--... -|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666655544433 455555556666666666666653
No 415
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.68 E-value=1.2e+02 Score=26.97 Aligned_cols=135 Identities=14% Similarity=0.141 Sum_probs=64.2
Q ss_pred HhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhc-c-cCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChH
Q 036340 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACA-H-AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLE 484 (579)
Q Consensus 407 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 484 (579)
.+.....+|+++-...+. +.|-..|....-+.+. . ..+..+-++.+.++..+ .+.+-.+|..--......|++.
T Consensus 54 ~~~E~S~RAl~LT~d~i~--lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~--npKNYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIR--LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED--NPKNYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred hccccCHHHHHHHHHHHH--hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHhcCcc
Confidence 345556677777777764 3454443322222111 1 12344555556665543 1224344433222233344444
Q ss_pred -HHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhh
Q 036340 485 -DAMDLIKGM--PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545 (579)
Q Consensus 485 -~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 545 (579)
.-+.+.+.| ...-+-..|..--.++..-++++.-+.+..++++.+-.|-.+|+.-.-+...
T Consensus 130 ~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~ 193 (318)
T KOG0530|consen 130 FRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITN 193 (318)
T ss_pred cchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEe
Confidence 444455554 1122344555555555555666666666666666555544555544333333
No 416
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=60.63 E-value=12 Score=35.78 Aligned_cols=102 Identities=11% Similarity=0.145 Sum_probs=72.0
Q ss_pred HHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHH-HHHhcccCcHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHhhcc
Q 036340 403 IGGCASHGFATEALELFKSMRSFKVLPTYITFISV-LSACAHAGLVEEGRQHFKSMVNEYGIEPR-IEHFASLVDIVGRH 480 (579)
Q Consensus 403 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 480 (579)
+..+...++++.|+.++.+.++ +.||...|... ..++.+.+++..|+.=...+++. .|+ ...|..-+.+..+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 4556677899999999999995 57877755443 36888999999998877766643 453 34444445556667
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 036340 481 GRLEDAMDLIKGM-PFEPDKAVWGALLGAC 509 (579)
Q Consensus 481 g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~ 509 (579)
+.+-+|...|+.. ...|+..-....+.-|
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 7788888888776 5677766666665554
No 417
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.50 E-value=2.5e+02 Score=30.35 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHH
Q 036340 297 SWNSMIAGCETNKDYEGAIKLFIQMQV 323 (579)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (579)
-|..|+..|...|++++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477888888888888888888888765
No 418
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=60.32 E-value=12 Score=33.53 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=31.9
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCC
Q 036340 478 GRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535 (579)
Q Consensus 478 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 535 (579)
.+.|+.++|..+|+.+ ...| ++..+..+....-..++.-+|-+.|-+++.+.|.+..+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 3566666666666554 3334 33344444444444456666666666666666666553
No 419
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=60.19 E-value=16 Score=28.84 Aligned_cols=63 Identities=14% Similarity=0.084 Sum_probs=44.8
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCC
Q 036340 483 LEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548 (579)
Q Consensus 483 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 548 (579)
.+.|.++.+-|+ ...............|++..|.++.+.++..+|+|..+....+.+|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 455666666664 334444555667789999999999999999999998888888888877664
No 420
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.18 E-value=1.1e+02 Score=29.35 Aligned_cols=51 Identities=18% Similarity=0.075 Sum_probs=23.2
Q ss_pred hhhcCCHHHHHHHHHhccC--CCCee--eHHHHHHHHH--hcCChHHHHHHHHHhHh
Q 036340 374 YARCGAIVEARIIFEEMKL--LKNVV--SWNAMIGGCA--SHGFATEALELFKSMRS 424 (579)
Q Consensus 374 ~~~~~~~~~A~~~~~~~~~--~~~~~--~~~~l~~~~~--~~~~~~~A~~~~~~~~~ 424 (579)
+.+.+++..|.++|+++.. +++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455666666666665541 11121 1222333332 24455556665555543
No 421
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.89 E-value=30 Score=25.03 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=18.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhhcC
Q 036340 504 ALLGACRVHNNVELAQVAAEALMKVE 529 (579)
Q Consensus 504 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 529 (579)
.+.......|++++|...+++++++-
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34455667788888888888887644
No 422
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=59.21 E-value=1.7e+02 Score=28.19 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHH
Q 036340 298 WNSMIAGCETNKDYEGAIKLFIQM 321 (579)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~ 321 (579)
...+|+-|...|+..+..+.++.+
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHc
Confidence 345677777777777777776654
No 423
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.21 E-value=2e+02 Score=28.89 Aligned_cols=161 Identities=16% Similarity=0.044 Sum_probs=97.0
Q ss_pred cCCHHHHHHHhhcCC---CC------------chhhHHHHHHHHHhcCChhhHHHHHccC-------CCC----------
Q 036340 73 TGEMEEALRLFNSMP---AR------------NVVSWNAMISGFLQNGDVANAIEFFDRM-------PGR---------- 120 (579)
Q Consensus 73 ~g~~~~A~~~~~~~~---~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~---------- 120 (579)
...|++|...|.-.. +| .+.+...+..++..+||.+.|..+.++. ..|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 345677777666443 22 2234445556778889988777666553 222
Q ss_pred -------CcchHHH---HHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHh-hCCCHHHHHHHHccccccC
Q 036340 121 -------DSASLSA---LVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG-QRGRVEEARKLFDKIPVNC 189 (579)
Q Consensus 121 -------~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 189 (579)
|...|.+ .+..+.+.|-+.-|.+.-+.+.+- .+..|+.....+|..|+ +..+++-.+++++......
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL--dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL--DPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 2222333 456677899999999999998885 33336666777777764 5677877777777663111
Q ss_pred CCCCCCccCCcchHHHHHHHHHHHhcCC---HHHHHHHHHhcCCCChhHHHHHH
Q 036340 190 DRGEGNVRFKRNIVSWNSMIMCYAKAGD---VVSAREIFEQMLERDTFSWNTMI 240 (579)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~l~ 240 (579)
....-||..--.+++..|.+... -+.|...+.+++..-+.....|+
T Consensus 409 -----~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl~eLl 457 (665)
T KOG2422|consen 409 -----KLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPLVLSELL 457 (665)
T ss_pred -----cHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHHHHHHH
Confidence 33445665545566777776665 45566666665554443333333
No 424
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.66 E-value=86 Score=28.10 Aligned_cols=68 Identities=4% Similarity=0.027 Sum_probs=37.3
Q ss_pred HHHHHhcCCHHHHHHHHcc----CCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036340 271 VSGYAQIGNLELALDFFKR----MPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338 (579)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 338 (579)
|.++++.+++.++..+.-+ -.+-.+.....-|-.|.+.+++..+.++-.......-.-+...|..++.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaE 161 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAE 161 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHH
Confidence 5677777777776654332 2223334445555666777777776666666554433333334444443
No 425
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=57.72 E-value=1.3e+02 Score=28.00 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=68.3
Q ss_pred hHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhc---cCChHHHH
Q 036340 412 ATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR---HGRLEDAM 487 (579)
Q Consensus 412 ~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~ 487 (579)
.+.-+.++++.+++ .|+.. ....++..+.+..+.+...+-|++++..+ +-+...|...+..... .-.+++..
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 45677888888876 45444 66667777778888888888888888651 2255666665554333 22455555
Q ss_pred HHHHhC-------CCCC----------CHHHHH---HHHHHHhhcCCHHHHHHHHHHHhhcCC
Q 036340 488 DLIKGM-------PFEP----------DKAVWG---ALLGACRVHNNVELAQVAAEALMKVEP 530 (579)
Q Consensus 488 ~~~~~~-------~~~~----------~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~p 530 (579)
.+|.+. .... +..... .+...+.+.|..+.|...++.+++++=
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 555443 1221 111111 122334567777777777777777653
No 426
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=55.42 E-value=89 Score=24.08 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=45.3
Q ss_pred CcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHH-HHHHHHhhcCCHHHHHHHHHH
Q 036340 466 RIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG-ALLGACRVHNNVELAQVAAEA 524 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~ 524 (579)
-..+..+++.++.-.|..++|.+++...++.+.....| .++..|.+..+.++..++-++
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34566788888889999999999999998877776654 467888888777776665444
No 427
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=55.36 E-value=2.1e+02 Score=28.68 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=19.5
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhcc
Q 036340 368 NALITMYARCGAIVEARIIFEEMK 391 (579)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~ 391 (579)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 456777888888888888888886
No 428
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.31 E-value=39 Score=25.85 Aligned_cols=50 Identities=24% Similarity=0.207 Sum_probs=37.9
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchh
Q 036340 489 LIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538 (579)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 538 (579)
-+-.+..-|++......+++|.+.+|+..|.++++-+...-+.....|-.
T Consensus 74 ~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y 123 (149)
T KOG4077|consen 74 NLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPY 123 (149)
T ss_pred hhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 33344677999999999999999999999999999887655554443333
No 429
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.82 E-value=66 Score=31.26 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCC--CCCCchhhhhhhhhcCCchHHHHHHHHH
Q 036340 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPE--NSTPYVLLYNMYADVGRWDDANEVRLLM 559 (579)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (579)
..+..+..+++-+|+++.|...+..+..+-|. ++.+...-..+-...|+...|...+++-
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhc
Confidence 35566778888999999999999888877663 3332222223335679999999988874
No 430
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=54.17 E-value=1.9e+02 Score=26.95 Aligned_cols=34 Identities=12% Similarity=-0.085 Sum_probs=12.6
Q ss_pred hcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 527 KVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 527 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
+..+.+...+..++..+...-.-++-.+-+++..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~ 302 (324)
T PF11838_consen 269 KKFGTNSSALSRVIKSFAGNFSTEEQLDELEEFF 302 (324)
T ss_dssp CHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3334433333333333333334444444444444
No 431
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=54.01 E-value=49 Score=29.97 Aligned_cols=78 Identities=6% Similarity=0.059 Sum_probs=47.5
Q ss_pred CCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHH-HHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhh
Q 036340 464 EPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGAL-LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540 (579)
Q Consensus 464 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 540 (579)
..|+..|...+.-..+.|.+.+.-.++.+. ...| |+..|-.. ..-+...++++.+..++.+.+.++|++|..|....
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 345555555554444556666666666555 3333 55555432 23355677888888888888888888887766544
Q ss_pred h
Q 036340 541 N 541 (579)
Q Consensus 541 ~ 541 (579)
.
T Consensus 184 r 184 (435)
T COG5191 184 R 184 (435)
T ss_pred H
Confidence 3
No 432
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.55 E-value=59 Score=23.33 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=14.7
Q ss_pred CcchhHHHHHHhhccCChHHHHHHHHhC
Q 036340 466 RIEHFASLVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 493 (579)
|......++..+...|++++|++.+-.+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555566666666666666554443
No 433
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=53.40 E-value=2.2e+02 Score=27.65 Aligned_cols=231 Identities=10% Similarity=0.027 Sum_probs=105.7
Q ss_pred HHHHHccCCHHHHHHHhhcCC--CCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHH
Q 036340 67 ISGYAKTGEMEEALRLFNSMP--ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARV 144 (579)
Q Consensus 67 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 144 (579)
+.++...| +.+...+-... .++...+..-..++....+......+.+.+..++...-...+.++...+...-...
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~- 121 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW- 121 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH-
Confidence 55666666 45555544444 23344443333333333332324444455555555566667777766665544433
Q ss_pred HHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHH
Q 036340 145 LVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI 224 (579)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 224 (579)
+..+.+ .. +.......+.++...+. + +...+..+. + .++..+-..-+.++...++.+..-.+
T Consensus 122 L~~~L~---~~--~p~vR~aal~al~~r~~-~-~~~~L~~~L--------~---d~d~~Vra~A~raLG~l~~~~a~~~L 183 (410)
T TIGR02270 122 LEPLLA---AS--EPPGRAIGLAALGAHRH-D-PGPALEAAL--------T---HEDALVRAAALRALGELPRRLSESTL 183 (410)
T ss_pred HHHHhc---CC--ChHHHHHHHHHHHhhcc-C-hHHHHHHHh--------c---CCCHHHHHHHHHHHHhhccccchHHH
Confidence 333333 11 22233344455544331 1 222222222 0 44555555666666666654333333
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHH
Q 036340 225 FEQMLERDTFSWNTMISGYIHVLDMEEASNLFVK-MPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIA 303 (579)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 303 (579)
..-....|...-...+.+....|. ..|...+.. ...++......+...+...|. +++...+..+.+.. .+-...+.
T Consensus 184 ~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d~-~vr~~a~~ 260 (410)
T TIGR02270 184 RLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQAA-ATRREALR 260 (410)
T ss_pred HHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcCh-hhHHHHHH
Confidence 333344555555556666666666 444444443 223444443333333333222 24444444443321 13444555
Q ss_pred HHHhCCCchHHHHHHHHH
Q 036340 304 GCETNKDYEGAIKLFIQM 321 (579)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~ 321 (579)
++...|+...+--+.+.|
T Consensus 261 AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 261 AVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHcCCcchHHHHHHHh
Confidence 555666665555444444
No 434
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=52.38 E-value=2.1e+02 Score=27.12 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=68.9
Q ss_pred HHHHHHhhccCChHHHHHHHHhCCCCC--------CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC-------C
Q 036340 471 ASLVDIVGRHGRLEDAMDLIKGMPFEP--------DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST-------P 535 (579)
Q Consensus 471 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~ 535 (579)
..|+..+..+|+.++|..++.+.+.+. -+.....-++.|...+|+-.|.-+-+++....=+.+. .
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 346677889999999999999885321 0111223347788899999998888887653322222 4
Q ss_pred chhhhhhhhhcCCchHHHHHHHHHHhCCCCCC
Q 036340 536 YVLLYNMYADVGRWDDANEVRLLMKSNNIKKP 567 (579)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 567 (579)
|..++....+.+.|=++...++.+-+.|-..+
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 77778888888999999999998876664444
No 435
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.93 E-value=1.1e+02 Score=23.77 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHcc
Q 036340 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDK 184 (579)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 184 (579)
|..+--.|+..-+ .+.++|..|...+ -....+..|...+..+...|++++|.++|+.
T Consensus 68 ylkiWi~ya~~~~--~~~~if~~l~~~~-IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 68 YLKIWIKYADLSS--DPREIFKFLYSKG-IGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHTTBS--HHHHHHHHHHHHT-TSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--CHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3334444444333 7888888887764 2334456788888888889999999888864
No 436
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=49.55 E-value=1.2e+02 Score=23.23 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=38.9
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCc----------chhHHHHHHhhccCChHHHHHHHHhC--------CCCC-CHHHHHH
Q 036340 444 AGLVEEGRQHFKSMVNEYGIEPRI----------EHFASLVDIVGRHGRLEDAMDLIKGM--------PFEP-DKAVWGA 504 (579)
Q Consensus 444 ~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~-~~~~~~~ 504 (579)
.|.+++|..-+++...-....|.. .++..|..++...|++++++.-.+.. .... ....|..
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 455666655555444433333332 23455666777777777655443322 2222 2334433
Q ss_pred HH----HHHhhcCCHHHHHHHHHHHh
Q 036340 505 LL----GACRVHNNVELAQVAAEALM 526 (579)
Q Consensus 505 l~----~~~~~~~~~~~A~~~~~~~~ 526 (579)
.+ .++...|..++|...|+.+-
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 32 33445566666666666554
No 437
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.49 E-value=1.1e+02 Score=22.84 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhcc
Q 036340 124 SLSALVSGLIQNGELDEAARVLVKCGS 150 (579)
Q Consensus 124 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 150 (579)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466777778888888888888887766
No 438
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.35 E-value=9.4 Score=34.78 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=55.5
Q ss_pred hhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCCCCccee
Q 036340 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572 (579)
Q Consensus 510 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 572 (579)
...|+++.|++.+-.++.++|.....|..-+.++.+.+++..|..-.....+.+.....++.|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf 187 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF 187 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence 467889999999999999999999999999999999999999999999888777666666544
No 439
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.86 E-value=42 Score=29.85 Aligned_cols=18 Identities=6% Similarity=0.054 Sum_probs=8.0
Q ss_pred HhcccCcHHHHHHHHHHh
Q 036340 440 ACAHAGLVEEGRQHFKSM 457 (579)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~ 457 (579)
.|...|++++|.++|+.+
T Consensus 187 ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 187 EYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 344444444444444444
No 440
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=47.58 E-value=1.3e+02 Score=26.07 Aligned_cols=97 Identities=19% Similarity=0.116 Sum_probs=44.6
Q ss_pred CCCCchHHHHHHHHhhhcCCHHHHHHHHHh-ccCCC---CeeeH--HHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhh
Q 036340 360 VIPDVPINNALITMYARCGAIVEARIIFEE-MKLLK---NVVSW--NAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433 (579)
Q Consensus 360 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~---~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 433 (579)
+.+...-.+.|+--|.-...+.+|.+.|.. ....| +...+ ..-|......|+.+.|++...++...-+..|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 333334444454445444445555554443 22222 22222 2234555667777777777666553333334333
Q ss_pred HHHHHH----HhcccCcHHHHHHHHHH
Q 036340 434 FISVLS----ACAHAGLVEEGRQHFKS 456 (579)
Q Consensus 434 ~~~l~~----~~~~~~~~~~a~~~~~~ 456 (579)
+..|.. -..+.|..++|+++.+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 332222 12445555666555543
No 441
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=47.56 E-value=2.4e+02 Score=26.24 Aligned_cols=118 Identities=11% Similarity=0.065 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHHh------cccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHH
Q 036340 412 ATEALELFKSMRSFKVLPTYITFISVLSAC------AHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485 (579)
Q Consensus 412 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 485 (579)
++++..++++...++. |.+......|.++ ...-+|.....+|+.+. .+.|++.+-.+-+-+..+..-.+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHHHHHHhhhHHh
Confidence 5778888888777664 7777766666544 23346778888888775 345654433333344555555677
Q ss_pred HHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC
Q 036340 486 AMDLIKGMPFEPD----KAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533 (579)
Q Consensus 486 A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 533 (579)
++..++.+...|. ...+..-...+.+.|..++|...|++++.+.++..
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 7777777643432 22233334557888999999999999998877654
No 442
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.05 E-value=37 Score=30.68 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHH
Q 036340 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336 (579)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (579)
-|+..|....+.||.++|+.++++..+.|+.--..+|...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4678899999999999999999999999987666665443
No 443
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=46.42 E-value=23 Score=31.73 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=35.7
Q ss_pred cccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC
Q 036340 442 AHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP 497 (579)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 497 (579)
.+.|+.++|..+|+.++ .+.| ++.....++......++.-+|-.++-++ .+.|
T Consensus 127 ~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 46788888888888776 3455 4556666666666667777777766554 4555
No 444
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=46.35 E-value=3.6e+02 Score=28.06 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=12.2
Q ss_pred hhccCChHHHHHHHHhCCCCC
Q 036340 477 VGRHGRLEDAMDLIKGMPFEP 497 (579)
Q Consensus 477 ~~~~g~~~~A~~~~~~~~~~~ 497 (579)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 346677777777777776555
No 445
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.99 E-value=2.2e+02 Score=25.53 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=41.6
Q ss_pred CCchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHh
Q 036340 362 PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441 (579)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 441 (579)
-++.....++..|.+.|++.+|+..|-.-. .++...+..++.-+...|...++ +...-..++ -|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~y 151 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QY 151 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HH
Confidence 366777888888888888888887665432 22222221122222222222211 111112222 35
Q ss_pred cccCcHHHHHHHHHHhHHh
Q 036340 442 AHAGLVEEGRQHFKSMVNE 460 (579)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~ 460 (579)
.-.++...|...+....+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 5667888888877776654
No 446
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.94 E-value=44 Score=27.67 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhHHh
Q 036340 447 VEEGRQHFKSMVNE 460 (579)
Q Consensus 447 ~~~a~~~~~~~~~~ 460 (579)
.+.|+.+|+.+.++
T Consensus 85 LESAl~v~~~I~~E 98 (200)
T cd00280 85 LESALMVLESIEKE 98 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 45666666666554
No 447
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.92 E-value=1.6e+02 Score=24.65 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=13.8
Q ss_pred HHHhhhcCCHHHHHHHHHhccCCCCe
Q 036340 371 ITMYARCGAIVEARIIFEEMKLLKNV 396 (579)
Q Consensus 371 ~~~~~~~~~~~~A~~~~~~~~~~~~~ 396 (579)
+..|.+.|.+++|.++++.....|+.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~ 143 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPES 143 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCc
Confidence 34455566666666666655433333
No 448
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=45.37 E-value=1.4e+02 Score=25.90 Aligned_cols=88 Identities=15% Similarity=0.085 Sum_probs=47.2
Q ss_pred cccCcHHHHHHHHHHhHHhh---CCCCC--cchhHHHHHHhhccCChHH-------HHHHHHhC----C--CCC-CH-HH
Q 036340 442 AHAGLVEEGRQHFKSMVNEY---GIEPR--IEHFASLVDIVGRHGRLED-------AMDLIKGM----P--FEP-DK-AV 501 (579)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~-------A~~~~~~~----~--~~~-~~-~~ 501 (579)
.....+++|++.|..++-.. +.+|. ..++..++..|...|+.+. |.+.|.+. . ..+ +. ..
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 34445555555444332211 22232 3455566777777777544 33333333 1 111 22 23
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhhcC
Q 036340 502 WGALLGACRVHNNVELAQVAAEALMKVE 529 (579)
Q Consensus 502 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 529 (579)
.-.++....+.|+.++|.+.|.+++...
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3344566778899999999999988644
No 449
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=44.48 E-value=1.7e+02 Score=27.11 Aligned_cols=66 Identities=17% Similarity=0.054 Sum_probs=38.7
Q ss_pred hhhcCCHHHHHHHHHhcc------CCCCeeeHH--HHHHHHHhcCChHHHHHHHHHhHh-----CCCCCChh-hHHHHHH
Q 036340 374 YARCGAIVEARIIFEEMK------LLKNVVSWN--AMIGGCASHGFATEALELFKSMRS-----FKVLPTYI-TFISVLS 439 (579)
Q Consensus 374 ~~~~~~~~~A~~~~~~~~------~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~-~~~~l~~ 439 (579)
..+.++.++|.++++++. ..|+.+.|. .....+...|+..++.+++.+..+ .+++|+.. .|..+-.
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 344456777777776663 344444432 344556667777777777777665 56666554 4444443
No 450
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=43.68 E-value=3.8e+02 Score=27.56 Aligned_cols=28 Identities=11% Similarity=0.231 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHccCCC
Q 036340 91 VVSWNAMISGFLQNGDVANAIEFFDRMPG 119 (579)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 119 (579)
+.-|. .+..+.-.|.++.|.+++.....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s~ 176 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHSS 176 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhccc
Confidence 44555 56777777888888888855443
No 451
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.68 E-value=33 Score=34.39 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=25.1
Q ss_pred HHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhh
Q 036340 471 ASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMK 527 (579)
Q Consensus 471 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 527 (579)
..+.-+|....+.++|.++++++ ..+| ++.+-..+..+....|..++|+........
T Consensus 398 R~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 398 RALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 33444455555555555555555 2222 222222223333444555555555544443
No 452
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.84 E-value=35 Score=26.45 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=23.7
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036340 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338 (579)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 338 (579)
-..|.-..|..+|++|++.|..||. |..++.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 3457778899999999999999885 444443
No 453
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.33 E-value=35 Score=22.35 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=21.9
Q ss_pred CcchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036340 199 KRNIVSWNSMIMCYAKAGDVVSAREIFEQML 229 (579)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 229 (579)
..|..-...++.++...|++++|.+.++++.
T Consensus 20 RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 20 RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555566677888888888888888777653
No 454
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.25 E-value=8.6e+02 Score=31.33 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=13.2
Q ss_pred HHHHHhhCCCHHHHHHHHcccc
Q 036340 165 LIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 165 l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
.+..|.+.|.+++|..+|+++.
T Consensus 2488 ~a~s~eQ~G~~e~AQ~lyekaq 2509 (3550)
T KOG0889|consen 2488 VALSYEQLGFWEEAQSLYEKAQ 2509 (3550)
T ss_pred HHHHHHHhhhHHHHhhHHHHHH
Confidence 3344556666666666666654
No 455
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.09 E-value=82 Score=28.02 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=39.2
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 036340 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227 (579)
Q Consensus 161 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 227 (579)
....++.-|...|++++|.++|+.+....++ +.-..+...+...+..++.+.|+.+....+--+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~---egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRR---EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445677788888888888888877422111 112234455556666777777777766655433
No 456
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.57 E-value=56 Score=29.62 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHH
Q 036340 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437 (579)
Q Consensus 399 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 437 (579)
|+..|..-.+.||+++|+.++++..+.|+.--..+|..-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 678888888899999999999999888876555555443
No 457
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=41.53 E-value=98 Score=34.31 Aligned_cols=145 Identities=14% Similarity=0.151 Sum_probs=77.2
Q ss_pred HHHHHhhCCCHHHHHH------HHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C
Q 036340 165 LIVGYGQRGRVEEARK------LFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE-------R 231 (579)
Q Consensus 165 l~~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~ 231 (579)
-.......|.+.++.+ ++...- ..-.++....|..+...+-+.|+.++|...-....- .
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~--------~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVM--------GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhh--------hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 3444555667776666 444221 111245566778888888888888888877655421 1
Q ss_pred ----ChhHHHHHHHHHHhcCChHHHHHHhhcCC----------CC-ChhhHHHHHHHHHhcCCHHHHHHHHccCCC----
Q 036340 232 ----DTFSWNTMISGYIHVLDMEEASNLFVKMP----------HP-DTLTWNAMVSGYAQIGNLELALDFFKRMPQ---- 292 (579)
Q Consensus 232 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 292 (579)
+...|..+.-.....++...|...+.+.. .| ...+++.+-..+...++++.|.++.+.+..
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 23345555555555556666655554443 12 233344444444455666666666655442
Q ss_pred -------CChhhHHHHHHHHHhCCCchHHHHH
Q 036340 293 -------KNLVSWNSMIAGCETNKDYEGAIKL 317 (579)
Q Consensus 293 -------~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (579)
++..++..+...+...+++..|...
T Consensus 1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred hcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 2233445555555555555444433
No 458
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.45 E-value=3.2e+02 Score=29.28 Aligned_cols=156 Identities=12% Similarity=0.079 Sum_probs=101.6
Q ss_pred HHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHH
Q 036340 336 ILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEA 415 (579)
Q Consensus 336 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 415 (579)
+|.-+.+.|..+.|..+.+..+. -......+|+++.|.+.-..+. +..+|..|+..-...|+.+-|
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~t-----------RF~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~Ia 691 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERT-----------RFELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIA 691 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcch-----------heeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHH
Confidence 33444566666666655443111 1233456799999988877754 566899999999999999999
Q ss_pred HHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCC
Q 036340 416 LELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPF 495 (579)
Q Consensus 416 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 495 (579)
+..|++... |..|--.|.-.|+.++-.++.+.+.. +.|..... ..-.-.|+.++-.++++..+.
T Consensus 692 Em~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~----r~D~~~~~---qnalYl~dv~ervkIl~n~g~ 755 (1202)
T KOG0292|consen 692 EMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI----RNDATGQF---QNALYLGDVKERVKILENGGQ 755 (1202)
T ss_pred HHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh----hhhhHHHH---HHHHHhccHHHHHHHHHhcCc
Confidence 999988763 33344457778888888777655432 23322211 112247889999999988864
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhh
Q 036340 496 EPDKAVWGALLGACRVHNNVELAQVAAEALMK 527 (579)
Q Consensus 496 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 527 (579)
-|- .|.. ...+|.-+.|.++.++.-.
T Consensus 756 ~~l--aylt----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 756 LPL--AYLT----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred ccH--HHHH----HhhcCcHHHHHHHHHhhcc
Confidence 431 2221 2357888888888888765
No 459
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=41.05 E-value=30 Score=31.22 Aligned_cols=79 Identities=5% Similarity=0.027 Sum_probs=51.5
Q ss_pred CCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHH-HHHHhhccCChHHHHHHHHhC-CCCC-CHHHHH
Q 036340 428 LPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFAS-LVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWG 503 (579)
Q Consensus 428 ~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 503 (579)
.|+.. .|...+..-.+.|.+.+...+|.++++. .+.+++.|.. ...-+...++++.+..+|.+. ...| ++..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k--hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK--HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 45444 4544444445667788888888888864 2446666654 344566788999999988876 4444 566776
Q ss_pred HHHHH
Q 036340 504 ALLGA 508 (579)
Q Consensus 504 ~l~~~ 508 (579)
...+.
T Consensus 181 eyfr~ 185 (435)
T COG5191 181 EYFRM 185 (435)
T ss_pred HHHHH
Confidence 66543
No 460
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=40.16 E-value=5.6e+02 Score=28.42 Aligned_cols=119 Identities=16% Similarity=0.216 Sum_probs=58.8
Q ss_pred HHHHHHHccCCHHHHHHHhhcCC-------CCchhhHHHHHHHHHhc-CChhhHHHHHccCCCCCcc--hHHHHH-----
Q 036340 65 TVISGYAKTGEMEEALRLFNSMP-------ARNVVSWNAMISGFLQN-GDVANAIEFFDRMPGRDSA--SLSALV----- 129 (579)
Q Consensus 65 ~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~--~~~~l~----- 129 (579)
..+.-+...++|.+|..+.++-. +.|+..+-.=+..+.++ ++.+----++..+.+.|.. .|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~~~~~~~ 778 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDTYPPSSE 778 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccccccccc
Confidence 44455667889999988887654 45555555545555443 3333333333333322211 111111
Q ss_pred -------HHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCC--CHHHHHHHHcccc
Q 036340 130 -------SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRG--RVEEARKLFDKIP 186 (579)
Q Consensus 130 -------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 186 (579)
......++....=+.+...+.. ..........++.+|.+.+ ++++|+.....+.
T Consensus 779 ~~~~~~~~~~~~~~KVn~ICdair~~l~~---~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~ 841 (928)
T PF04762_consen 779 AQPNSNSSTASSESKVNKICDAIRKALEK---PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELR 841 (928)
T ss_pred cccccccCCCccccHHHHHHHHHHHHhcc---cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 0111222333333333333321 2223345566777777777 7777777777775
No 461
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=39.57 E-value=1.4e+02 Score=26.01 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=16.8
Q ss_pred hcCCHHHHHHHHHHHhhcCCC
Q 036340 511 VHNNVELAQVAAEALMKVEPE 531 (579)
Q Consensus 511 ~~~~~~~A~~~~~~~~~~~p~ 531 (579)
..++...|...++++.+++|.
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCC
Confidence 345677899999999988886
No 462
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.47 E-value=73 Score=33.51 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=22.9
Q ss_pred ccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 036340 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525 (579)
Q Consensus 479 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 525 (579)
.+|+.+.|++..++.. +...|..|+.....+|+.+-|+..|++.
T Consensus 655 e~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 4555555555554432 4445555555555555555555555543
No 463
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=38.84 E-value=46 Score=30.28 Aligned_cols=105 Identities=9% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHH
Q 036340 380 IVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459 (579)
Q Consensus 380 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 459 (579)
+.+|+++|++.. +....+|+ +..+...--...+.+.+.....-...-..|..+-.+.|+..+|.+.++++.+
T Consensus 232 i~~AE~l~k~AL-ka~e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 232 IVDAERLFKQAL-KAGETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHHHHHHHHHHH-HHHHHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q ss_pred hhCCCCCcchhHHHHHHhhccCChHHHHHHHHh
Q 036340 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492 (579)
Q Consensus 460 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 492 (579)
+..+..-......|++++....-+.+...++-+
T Consensus 304 e~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 304 EFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 464
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.64 E-value=4.4e+02 Score=26.74 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=25.2
Q ss_pred HhcccCcHHHHHHHHHHhHHhhCCCC--CcchhHHHHHHhh-ccCChHHHHHHHHhC
Q 036340 440 ACAHAGLVEEGRQHFKSMVNEYGIEP--RIEHFASLVDIVG-RHGRLEDAMDLIKGM 493 (579)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 493 (579)
.+.+.|-+..|.++.+-+. .+.| |+.....+++.|+ +..+++--+++++..
T Consensus 351 ~l~~RGC~rTA~E~cKlll---sLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLL---SLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhcCChHHHHHHHHHHh---hcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445566666666655544 2333 3444444455443 444555444444443
No 465
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.52 E-value=3e+02 Score=24.89 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC
Q 036340 206 NSMIMCYAKAGDVVSAREIFEQMLER 231 (579)
Q Consensus 206 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 231 (579)
..+++-..+.+++++|+..+.+++..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~k 32 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGK 32 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 34556667778888888888877654
No 466
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=38.36 E-value=1.8e+02 Score=32.42 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=96.9
Q ss_pred HHHHHhCCCHHHHHH------HHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcch
Q 036340 129 VSGLIQNGELDEAAR------VLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202 (579)
Q Consensus 129 ~~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 202 (579)
.+.....|.+.++.+ ++...... ..++....|..+...+.+.|+.++|+..-.+....+.+..+. .-+.+.
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~--~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~-ds~~t~ 1015 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGV--LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK-DSPNTK 1015 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhh--cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC-CCHHHH
Confidence 334455667776666 55533222 456667789999999999999999998877664333222111 112345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CC-hhHHHHHHHHHHhcCChHHHHHHhhcCC-----------
Q 036340 203 VSWNSMIMCYAKAGDVVSAREIFEQMLE----------RD-TFSWNTMISGYIHVLDMEEASNLFVKMP----------- 260 (579)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------- 260 (579)
..|..+.......++...|...+.+... |. ..+++.+-..+...+..+.|.++++.+.
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 5677777677777787777777766522 22 2344555555566688888888887765
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 036340 261 HPDTLTWNAMVSGYAQIGNLELALDFF 287 (579)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~ 287 (579)
-++...+..+.+.+...+++..|....
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 133445666666666666666555443
No 467
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=38.35 E-value=1.1e+02 Score=21.68 Aligned_cols=25 Identities=4% Similarity=0.202 Sum_probs=9.3
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHH
Q 036340 281 ELALDFFKRMPQKNLVSWNSMIAGC 305 (579)
Q Consensus 281 ~~A~~~~~~~~~~~~~~~~~l~~~~ 305 (579)
+++.++++.+..+++.+|.....++
T Consensus 47 ~q~~~LLd~L~~RG~~AF~~F~~aL 71 (84)
T cd08326 47 DQARQLLIDLETRGKQAFPAFLSAL 71 (84)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3333333333333333333333333
No 468
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=38.12 E-value=3.7e+02 Score=25.81 Aligned_cols=127 Identities=13% Similarity=0.149 Sum_probs=79.0
Q ss_pred CCcchHHHHHHHHHH--HhcCCHHHHHHHHHhcCCC----ChhH--------HHHHHHHHHhcCChHHHHHHhhcCC---
Q 036340 198 FKRNIVSWNSMIMCY--AKAGDVVSAREIFEQMLER----DTFS--------WNTMISGYIHVLDMEEASNLFVKMP--- 260 (579)
Q Consensus 198 ~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~----~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~--- 260 (579)
+++....|..++-.+ ....++.+|.++-+..+.+ |..+ |.-+-.++-..|+...-...+....
T Consensus 120 ~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA 199 (493)
T KOG2581|consen 120 LPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA 199 (493)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Confidence 344455665555443 3457788888777665432 3333 3333445556676555555554443
Q ss_pred --CCCh----hhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHH-------HHHHHHhCCCchHHHHHHHHHHHc
Q 036340 261 --HPDT----LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNS-------MIAGCETNKDYEGAIKLFIQMQVE 324 (579)
Q Consensus 261 --~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~ 324 (579)
..|. ...|.|++.|...+.++.|.++..+..-|+...-+. +....+-++++..|.+.|-.....
T Consensus 200 tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 200 TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 3333 346778888888999999999999888654433222 233345578899999999887764
No 469
>PRK02287 hypothetical protein; Provisional
Probab=37.96 E-value=2.1e+02 Score=23.53 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=44.4
Q ss_pred cchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHH-HHHHHHhhcCCHHHHHHHHHHHh
Q 036340 467 IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWG-ALLGACRVHNNVELAQVAAEALM 526 (579)
Q Consensus 467 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~ 526 (579)
..+..+++.++.-.|..+.|.+++....+.++....| .++..|.+..+.++..++-++.+
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4566778888888999999999999887777665554 56788887777777766655544
No 470
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=37.02 E-value=61 Score=17.87 Aligned_cols=24 Identities=13% Similarity=0.409 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhHHhhCCCCCcchhHHH
Q 036340 447 VEEGRQHFKSMVNEYGIEPRIEHFASL 473 (579)
Q Consensus 447 ~~~a~~~~~~~~~~~~~~~~~~~~~~l 473 (579)
++.|..+|++.+.- .|++.+|...
T Consensus 3 ~dRAR~IyeR~v~~---hp~~k~Wiky 26 (32)
T PF02184_consen 3 FDRARSIYERFVLV---HPEVKNWIKY 26 (32)
T ss_pred HHHHHHHHHHHHHh---CCCchHHHHH
Confidence 45566666666532 3555555443
No 471
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=36.68 E-value=1e+02 Score=25.89 Aligned_cols=54 Identities=11% Similarity=0.022 Sum_probs=26.3
Q ss_pred CHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHH----------HHHhcCCHHHHHHHHHhc
Q 036340 174 RVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIM----------CYAKAGDVVSAREIFEQM 228 (579)
Q Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~A~~~~~~~ 228 (579)
.+-+|..++..+...+-+.....|++|-... +-+.+ -..+.|+++.|.+.++-|
T Consensus 84 EyvEA~~l~~~l~~~~~ps~~EL~V~~~~Yi-lGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~M 147 (204)
T COG2178 84 EYVEATLLYSILKDGRLPSPEELGVPPIAYI-LGLADAVGELRRHVLELLRKGSFEEAERFLKFM 147 (204)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4567777776665333222223344443211 11111 123557777777776665
No 472
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=36.19 E-value=1.8e+02 Score=28.23 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=28.8
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC
Q 036340 489 LIKGMPFEPDKA--VWGALLGACRVHNNVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 489 ~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 532 (579)
+|...+..|... ++...+..+.+.+++..|..+.++++++.|..
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 343444555333 55666677889999999999999999998863
No 473
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=36.08 E-value=3.7e+02 Score=25.15 Aligned_cols=163 Identities=13% Similarity=0.042 Sum_probs=75.1
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhcc-------CCCCeeeHH-HHHHHHHhcCChHHHHHHHHHhHhC----CCCCChhhHH
Q 036340 368 NALITMYARCGAIVEARIIFEEMK-------LLKNVVSWN-AMIGGCASHGFATEALELFKSMRSF----KVLPTYITFI 435 (579)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~~~ 435 (579)
..++..|...+++.+|..+...+. .++...... .=-.+|....+..+|..-+-...-. -.+|....-.
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 346777777777777776655432 122111111 1112333444444444444333211 1223222211
Q ss_pred HHHH--HhcccCcHHHHHHHHHHhHHhhCCCC-CcchhH---HHHHHhhccCChHHHHHHHHhC----CCCCCHHHHHHH
Q 036340 436 SVLS--ACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFA---SLVDIVGRHGRLEDAMDLIKGM----PFEPDKAVWGAL 505 (579)
Q Consensus 436 ~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~---~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l 505 (579)
-+.. .++...++..|..+|-+..+.+..-. ++.... .++-+-...+..++...++..- -..|+......+
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 2222 12334677777777766655321111 122222 2222333455666655554321 134667777777
Q ss_pred HHHHhhc--CCHHHHHHHHHHHhhcCC
Q 036340 506 LGACRVH--NNVELAQVAAEALMKVEP 530 (579)
Q Consensus 506 ~~~~~~~--~~~~~A~~~~~~~~~~~p 530 (579)
..++.+. .+++.|+.-|+.=+..+|
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 7776543 366677666665544443
No 474
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.82 E-value=88 Score=24.41 Aligned_cols=31 Identities=16% Similarity=-0.063 Sum_probs=26.8
Q ss_pred hhhhcCCchHHHHHHHHHHhCCCCCCCccee
Q 036340 542 MYADVGRWDDANEVRLLMKSNNIKKPTGYSW 572 (579)
Q Consensus 542 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 572 (579)
.....|.-.+|..+|++|.+.|-+|+.+...
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPddW~~L 134 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDDWDAL 134 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCccHHHH
Confidence 6777899999999999999999998887543
No 475
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.76 E-value=6.7e+02 Score=28.10 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=14.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHhc
Q 036340 369 ALITMYARCGAIVEARIIFEEM 390 (579)
Q Consensus 369 ~l~~~~~~~~~~~~A~~~~~~~ 390 (579)
.+..+|...|...+|...|.+.
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a 946 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSA 946 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHH
Confidence 3444566677777777777654
No 476
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=34.81 E-value=1.6e+02 Score=28.35 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHH
Q 036340 207 SMIMCYAKAGDVVSAREIFEQMLER---DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275 (579)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 275 (579)
.|+.-|...|+..+|...++++--| ....+.+++.+.-+.|+-...+.+++..-.....|-+.+-.+|.
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~ 585 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhh
Confidence 4555666666666666666665444 23445566666666666555555555555455555555555543
No 477
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=33.87 E-value=1.1e+02 Score=21.56 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=15.3
Q ss_pred ccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcC
Q 036340 72 KTGEMEEALRLFNSMPARNVVSWNAMISGFLQNG 105 (579)
Q Consensus 72 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (579)
...+.++|.++++.++...+.+|..+..++-..|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3334444444444444444444444444444433
No 478
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.82 E-value=5.2e+02 Score=26.18 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhcCCHHHH-HHHHHHHhhcCCCCCC-CchhhhhhhhhcCCchHHHHHHHHHHhCCCC
Q 036340 501 VWGALLGACRVHNNVELA-QVAAEALMKVEPENST-PYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565 (579)
Q Consensus 501 ~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (579)
..+.++......+.-++- .++++...+..|..+. -|..++.++...++.+.|..+++++.+.+..
T Consensus 174 i~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end~ 240 (926)
T COG5116 174 IINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKENDL 240 (926)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhhh
Confidence 444444444433333332 3456666666655432 2788899999999999999999999876643
No 479
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.63 E-value=1.2e+02 Score=18.62 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=22.7
Q ss_pred HhcCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 036340 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLS 439 (579)
Q Consensus 407 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 439 (579)
.+.|-.+++...+++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 356666777777777777777777666665554
No 480
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=33.41 E-value=4.7e+02 Score=25.55 Aligned_cols=119 Identities=6% Similarity=-0.080 Sum_probs=54.4
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 036340 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279 (579)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 279 (579)
++..+....+.++...++......+..-+...++......+.++...+. +-...+..-+..+|..+-..-+.++...+.
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPR 176 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Confidence 3444555666666666665555444444444455444444444443321 111111111224555555555555555554
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHH
Q 036340 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQ 320 (579)
Q Consensus 280 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 320 (579)
.+..-.+..-....|...-..-+.+....|. ..|...+..
T Consensus 177 ~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 177 RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHH
Confidence 3333332222333555555555555555555 455554444
No 481
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.13 E-value=6e+02 Score=26.76 Aligned_cols=121 Identities=14% Similarity=0.098 Sum_probs=64.2
Q ss_pred HhhhcCCHHHHHHHHHhccCCCCeee----HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHH
Q 036340 373 MYARCGAIVEARIIFEEMKLLKNVVS----WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448 (579)
Q Consensus 373 ~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 448 (579)
++.--|+.++|..+.+++....|+.. ..++..+|+-.|+.....+++.-... ....|..-+..+.-++.-..+++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEecChh
Confidence 34444666677777777752333322 23345566667766555555554443 23334444555555666667777
Q ss_pred HHHHHHHHhHHhhCCCCCcchhHH--HHHHhhccCChHHHHHHHHhCCCCC
Q 036340 449 EGRQHFKSMVNEYGIEPRIEHFAS--LVDIVGRHGRLEDAMDLIKGMPFEP 497 (579)
Q Consensus 449 ~a~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~ 497 (579)
....+.+-+.+ ...|.+..-.. |+-++.-.| ..+|+.+++-|-..|
T Consensus 589 ~~~s~V~lLse--s~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~D~ 636 (929)
T KOG2062|consen 589 QLPSTVSLLSE--SYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTSDP 636 (929)
T ss_pred hchHHHHHHhh--hcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhcCh
Confidence 77777665544 34454433333 333333333 346777777774333
No 482
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.96 E-value=2.1e+02 Score=26.77 Aligned_cols=72 Identities=10% Similarity=0.054 Sum_probs=54.7
Q ss_pred hCCC-HHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHH
Q 036340 134 QNGE-LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCY 212 (579)
Q Consensus 134 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 212 (579)
..|- .++...++..+++..+....-+..|..++......|.++..+.+|++++ ..|..|-...-..+++.+
T Consensus 114 ~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi--------~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 114 EEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAI--------LAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH--------HcCCChHHHHHHHHHHHH
Confidence 3454 4578888888887544444445678888888889999999999999998 778888777777777776
Q ss_pred H
Q 036340 213 A 213 (579)
Q Consensus 213 ~ 213 (579)
-
T Consensus 186 ~ 186 (353)
T PF15297_consen 186 K 186 (353)
T ss_pred H
Confidence 5
No 483
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=32.90 E-value=3.8e+02 Score=24.39 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=27.8
Q ss_pred CHHHHHHHHccCCCC-ChhhHHHHHHHHHh----CCCchHHHHHHHHHHHcCCCCC
Q 036340 279 NLELALDFFKRMPQK-NLVSWNSMIAGCET----NKDYEGAIKLFIQMQVEGEKPD 329 (579)
Q Consensus 279 ~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 329 (579)
+..+|.++|....+. .+.....|...|.. ..+..+|...|++..+.|..+.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a 147 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA 147 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH
Confidence 456666666644432 23334444444443 2366777777777777665543
No 484
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=32.77 E-value=98 Score=17.85 Aligned_cols=27 Identities=22% Similarity=0.132 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhh
Q 036340 501 VWGALLGACRVHNNVELAQVAAEALMK 527 (579)
Q Consensus 501 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 527 (579)
++..++......++++.|..-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555666666666665554
No 485
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=32.62 E-value=2.4e+02 Score=21.90 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=22.2
Q ss_pred HHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHH
Q 036340 415 ALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFK 455 (579)
Q Consensus 415 A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~ 455 (579)
..++|..|.+.|+-.... -|......+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566666555544433 44444445555666666666554
No 486
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.93 E-value=84 Score=28.82 Aligned_cols=23 Identities=4% Similarity=0.010 Sum_probs=12.5
Q ss_pred CChhhHHHHHHHHHhCCCchHHH
Q 036340 293 KNLVSWNSMIAGCETNKDYEGAI 315 (579)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~ 315 (579)
-|+..|..+..+|.-.|+...+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 34555666666665555544444
No 487
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.79 E-value=1.9e+02 Score=30.08 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=9.0
Q ss_pred hhhhhhcCCchHHHHHHH
Q 036340 540 YNMYADVGRWDDANEVRL 557 (579)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~ 557 (579)
...+.+.|..+.-.++|+
T Consensus 351 n~LlgrKG~leklq~YWd 368 (1226)
T KOG4279|consen 351 NSLLGRKGALEKLQEYWD 368 (1226)
T ss_pred HHHhhccchHHHHHHHHh
Confidence 334445555555555544
No 488
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=30.69 E-value=2e+02 Score=22.28 Aligned_cols=42 Identities=17% Similarity=0.339 Sum_probs=27.8
Q ss_pred HHHHHHHhHHhhCCCCC-cchhHHHHHHhhccCChHHHHHHHHh
Q 036340 450 GRQHFKSMVNEYGIEPR-IEHFASLVDIVGRHGRLEDAMDLIKG 492 (579)
Q Consensus 450 a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 492 (579)
..++|..|..+ ++-.. ...|...+..+...|++.+|.++++.
T Consensus 82 p~~if~~L~~~-~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 82 PRELFQFLYSK-GIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 45667766554 55443 44566777777788888888887753
No 489
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=30.28 E-value=3.5e+02 Score=25.94 Aligned_cols=21 Identities=5% Similarity=-0.301 Sum_probs=11.1
Q ss_pred HHhcCChHHHHHHHHHhHhCC
Q 036340 406 CASHGFATEALELFKSMRSFK 426 (579)
Q Consensus 406 ~~~~~~~~~A~~~~~~~~~~~ 426 (579)
+.+.+++..|.++|+++....
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~ 160 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRL 160 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcc
Confidence 344555555555555555443
No 490
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=30.17 E-value=7.2e+02 Score=26.70 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=13.5
Q ss_pred hccCChHHHHHHHHhCC
Q 036340 478 GRHGRLEDAMDLIKGMP 494 (579)
Q Consensus 478 ~~~g~~~~A~~~~~~~~ 494 (579)
...|++++|+++++...
T Consensus 718 y~~~~~e~aL~~le~l~ 734 (835)
T KOG2168|consen 718 YHNGEWEEALSILEHLD 734 (835)
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 46788899998888773
No 491
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.01 E-value=1.9e+02 Score=26.52 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=25.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 128 LVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
++....+.++.....+.++.+.. ...-...+..+...|++..|++++....
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~--------v~~~~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT--------VQQTQSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444444444444444444332 1123344555566677777777666654
No 492
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.82 E-value=5.2e+02 Score=24.94 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=13.5
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHH
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKS 456 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~ 456 (579)
..+.|++.|...+.++.|..+..+
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK 234 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSK 234 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhc
Confidence 345555556666666666555443
No 493
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.70 E-value=5.2e+02 Score=24.92 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=9.7
Q ss_pred hCCCchHHHHHHHHHHHc
Q 036340 307 TNKDYEGAIKLFIQMQVE 324 (579)
Q Consensus 307 ~~~~~~~a~~~~~~~~~~ 324 (579)
+.+++..|.++++.+...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 445555555555555544
No 494
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.70 E-value=8.5e+02 Score=27.41 Aligned_cols=114 Identities=11% Similarity=0.117 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCC----C---hhHHHHHHHHHHhcCChHHHHHHhhcCCCCChh----hHHHHH
Q 036340 203 VSWNSMIMCYAKAGDVVSAREIFEQMLER----D---TFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL----TWNAMV 271 (579)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~l~ 271 (579)
.-|..+++.+-+.+-.+.+.++-...++. + ..+++.+.+.+...|.+.+|...+-.- ||.. ....++
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n--pdserrrdcLRqlv 1061 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN--PDSERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence 34666777788888888777776655431 1 235667778888888888888776553 4543 345566
Q ss_pred HHHHhcCCHHH------------HHH-HHccCCC----CChhhHHHHHHHHHhCCCchHHHHHH
Q 036340 272 SGYAQIGNLEL------------ALD-FFKRMPQ----KNLVSWNSMIAGCETNKDYEGAIKLF 318 (579)
Q Consensus 272 ~~~~~~g~~~~------------A~~-~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (579)
-.+..+|+++. ... +++..-+ .....|+.|-..+...+++.+|-.+.
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 66677776543 333 2222221 12234555666667888888876543
No 495
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=29.48 E-value=3.8e+02 Score=23.35 Aligned_cols=95 Identities=19% Similarity=0.215 Sum_probs=44.5
Q ss_pred CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC---ChhhH--HHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcch
Q 036340 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP---TYITF--ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEH 469 (579)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 469 (579)
...-+|.|+--|.-...+.+|-+.|..-. |+.| +..++ ..-++.....|+.+.|++....+-.+ -+..|...
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNREL 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhH
Confidence 33445555555544444455555444322 4444 22222 23344556666666666666655433 23333322
Q ss_pred hHHHHH----HhhccCChHHHHHHHHh
Q 036340 470 FASLVD----IVGRHGRLEDAMDLIKG 492 (579)
Q Consensus 470 ~~~l~~----~~~~~g~~~~A~~~~~~ 492 (579)
+..+.. -+.+.|..++|+++.+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 222211 13466666666666654
No 496
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.43 E-value=4e+02 Score=23.48 Aligned_cols=127 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH-HhhcCCCCchHHHHHHHHhhhcCCH
Q 036340 302 IAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGAI 380 (579)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ 380 (579)
+..|.+.-++.-|-...++.. .+.--...+--|.+..+...-.++.+- ...+++-+..-..+++ +...|+.
T Consensus 137 MEiyS~ttRFalaCN~s~KIi------EPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDM 208 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKII------EPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDM 208 (333)
T ss_pred HHHHcccchhhhhhcchhhhh------hhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchH
Q ss_pred HHHHHHHHhcc---------------CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHH
Q 036340 381 VEARIIFEEMK---------------LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISV 437 (579)
Q Consensus 381 ~~A~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 437 (579)
.+|...++.-. ..|.+.....++..|...+ +++|.++++++.+.|..|....-+.+
T Consensus 209 RQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~-~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 209 RQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRN-IDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred HHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhcc-HHHHHHHHHHHHHcCCCHHHHHHHHH
No 497
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.31 E-value=2.7e+02 Score=22.27 Aligned_cols=44 Identities=14% Similarity=0.060 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhc
Q 036340 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340 (579)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (579)
.-..++..+...+++-.|.++++++.+.+...+..|....+..+
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l 65 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLL 65 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 34455566666666677777777777666555555544444433
No 498
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=29.07 E-value=3e+02 Score=22.01 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=49.5
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhcc--------CCCCeeeHHHHHHHHHhcCC-hHHHHHHHHHhHhCCCCCChhhHHHH
Q 036340 367 NNALITMYARCGAIVEARIIFEEMK--------LLKNVVSWNAMIGGCASHGF-ATEALELFKSMRSFKVLPTYITFISV 437 (579)
Q Consensus 367 ~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~p~~~~~~~l 437 (579)
.+.++.-....+++.....+++.+. ...+...|.+++.+..+..- --.+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455555555666666666666553 13355567788887755544 33466777777776777777777777
Q ss_pred HHHhccc
Q 036340 438 LSACAHA 444 (579)
Q Consensus 438 ~~~~~~~ 444 (579)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7765543
No 499
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=28.94 E-value=2.5e+02 Score=20.99 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=13.4
Q ss_pred hhhhhcCCCHHHHHHHhccCCCC
Q 036340 2 ISGYVKRREMAKARKLFDEMPQR 24 (579)
Q Consensus 2 ~~~~~~~~~~~~A~~~~~~~~~~ 24 (579)
+..|...+++++|...+.++..|
T Consensus 9 l~ey~~~~D~~ea~~~l~~L~~~ 31 (113)
T smart00544 9 IEEYLSSGDTDEAVHCLLELKLP 31 (113)
T ss_pred HHHHHHcCCHHHHHHHHHHhCCC
Confidence 34555666666666666665544
No 500
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=28.93 E-value=5e+02 Score=24.77 Aligned_cols=46 Identities=15% Similarity=0.054 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
+-+|.-+++.... ..|.+...-..++..|...|-...|.+.|..+.
T Consensus 199 l~~Ai~lLE~~l~---~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~ 244 (365)
T PF09797_consen 199 LLQAIALLEHALK---KSPHNYQLKLLLVRLYSLLGAGSLALEHYESLD 244 (365)
T ss_pred HHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcC
Confidence 3455555666555 345555556666666777777777777776664
Done!