Query 036340
Match_columns 579
No_of_seqs 632 out of 3295
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 20:08:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.4E-42 1.2E-46 351.5 32.9 506 8-545 66-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.3E-41 2.5E-45 341.7 33.3 487 70-564 63-581 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.3E-29 1.5E-33 240.0 32.5 370 128-548 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 9.3E-28 3.2E-32 230.7 31.0 349 208-563 5-369 (388)
5 4g26_A Pentatricopeptide repea 99.9 9.1E-26 3.1E-30 219.6 21.7 182 297-479 28-222 (501)
6 2gw1_A Mitochondrial precursor 99.9 8.5E-25 2.9E-29 218.7 28.1 273 264-539 186-489 (514)
7 3fp2_A TPR repeat-containing p 99.9 5.8E-25 2E-29 221.2 26.9 427 90-535 24-498 (537)
8 2gw1_A Mitochondrial precursor 99.9 1.4E-24 4.9E-29 217.1 28.7 392 159-564 6-480 (514)
9 3fp2_A TPR repeat-containing p 99.9 2.2E-24 7.5E-29 216.9 28.1 423 123-563 26-492 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.5E-23 5E-28 205.9 26.6 342 155-564 22-412 (450)
11 4g26_A Pentatricopeptide repea 99.9 2.2E-24 7.7E-29 209.8 19.5 198 313-511 8-222 (501)
12 2y4t_A DNAJ homolog subfamily 99.9 2.8E-22 9.5E-27 196.8 29.2 356 122-533 26-415 (450)
13 1xi4_A Clathrin heavy chain; a 99.9 1.7E-18 5.6E-23 178.5 48.1 369 2-416 992-1375(1630)
14 1xi4_A Clathrin heavy chain; a 99.9 4.9E-18 1.7E-22 175.1 44.1 386 120-555 983-1377(1630)
15 3ieg_A DNAJ homolog subfamily 99.9 1.1E-20 3.7E-25 179.4 22.8 314 201-542 2-349 (359)
16 3ieg_A DNAJ homolog subfamily 99.9 2.9E-20 9.8E-25 176.4 24.2 304 233-564 3-337 (359)
17 2xm6_A Protein corresponding t 99.9 9.4E-19 3.2E-23 173.0 31.9 366 121-546 38-453 (490)
18 3hym_B Cell division cycle pro 99.8 2.2E-19 7.6E-24 168.1 24.7 286 262-550 20-322 (330)
19 1b89_A Protein (clathrin heavy 99.8 1.2E-18 4E-23 161.2 25.8 276 7-318 15-305 (449)
20 2xm6_A Protein corresponding t 99.8 5.1E-18 1.7E-22 167.7 32.4 356 49-460 27-432 (490)
21 4g1t_A Interferon-induced prot 99.8 9.4E-19 3.2E-23 172.7 26.4 391 138-573 31-470 (472)
22 2ooe_A Cleavage stimulation fa 99.8 6.7E-18 2.3E-22 168.6 32.6 406 121-563 12-493 (530)
23 3hym_B Cell division cycle pro 99.8 1E-18 3.5E-23 163.6 23.4 267 293-563 20-300 (330)
24 1fch_A Peroxisomal targeting s 99.8 2.9E-19 9.8E-24 170.2 18.8 257 297-558 66-355 (368)
25 1b89_A Protein (clathrin heavy 99.8 3.3E-18 1.1E-22 158.2 24.1 222 72-324 15-236 (449)
26 2ooe_A Cleavage stimulation fa 99.8 1.7E-16 5.8E-21 158.5 34.3 410 88-532 10-496 (530)
27 3mkr_A Coatomer subunit epsilo 99.8 3.2E-17 1.1E-21 149.1 25.4 271 242-556 8-288 (291)
28 4g1t_A Interferon-induced prot 99.8 8.9E-18 3.1E-22 165.7 21.6 389 123-540 52-471 (472)
29 4eqf_A PEX5-related protein; a 99.8 4.9E-18 1.7E-22 161.3 17.0 258 298-558 68-352 (365)
30 1fch_A Peroxisomal targeting s 99.8 6.2E-18 2.1E-22 160.9 17.0 277 278-563 15-315 (368)
31 3cv0_A Peroxisome targeting si 99.8 7.9E-18 2.7E-22 157.3 16.2 258 298-559 24-312 (327)
32 4eqf_A PEX5-related protein; a 99.8 1.8E-17 6.1E-22 157.5 17.3 233 329-563 64-311 (365)
33 3mkr_A Coatomer subunit epsilo 99.7 7.5E-16 2.6E-20 140.0 26.1 249 130-423 7-262 (291)
34 3cv0_A Peroxisome targeting si 99.7 5.6E-16 1.9E-20 144.7 20.9 278 201-531 20-318 (327)
35 2pl2_A Hypothetical conserved 99.7 1E-16 3.5E-21 139.2 14.1 195 361-560 2-212 (217)
36 3e4b_A ALGK; tetratricopeptide 99.7 4.3E-16 1.5E-20 151.3 18.8 371 66-459 9-420 (452)
37 3e4b_A ALGK; tetratricopeptide 99.7 3.4E-16 1.2E-20 152.0 15.0 376 164-560 8-419 (452)
38 3uq3_A Heat shock protein STI1 99.7 1.8E-15 6.2E-20 135.8 15.9 218 297-562 7-236 (258)
39 3u4t_A TPR repeat-containing p 99.7 5.7E-15 2E-19 133.8 18.5 244 267-547 6-269 (272)
40 3uq3_A Heat shock protein STI1 99.6 3E-15 1E-19 134.4 15.5 189 365-564 6-204 (258)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.7E-15 2.3E-19 133.6 17.5 241 308-556 18-269 (275)
42 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.3E-15 1.1E-19 135.6 12.7 240 4-256 14-269 (275)
43 2pl2_A Hypothetical conserved 99.6 6.5E-15 2.2E-19 127.8 12.3 186 59-257 4-209 (217)
44 3spa_A Mtrpol, DNA-directed RN 99.6 8.3E-16 2.8E-20 154.0 6.9 126 363-493 126-258 (1134)
45 2h6f_A Protein farnesyltransfe 99.6 4.1E-14 1.4E-18 132.8 18.0 244 297-546 99-366 (382)
46 2ho1_A Type 4 fimbrial biogene 99.6 3.3E-14 1.1E-18 127.1 16.5 198 364-563 37-239 (252)
47 2q7f_A YRRB protein; TPR, prot 99.6 1.7E-14 6E-19 128.1 14.5 177 363-542 56-236 (243)
48 2vq2_A PILW, putative fimbrial 99.6 3.8E-14 1.3E-18 124.2 16.3 199 363-563 7-212 (225)
49 1ouv_A Conserved hypothetical 99.6 1.4E-13 4.9E-18 124.5 20.4 224 294-563 5-252 (273)
50 2ho1_A Type 4 fimbrial biogene 99.6 1.5E-13 5E-18 122.8 19.5 205 295-536 37-246 (252)
51 2q7f_A YRRB protein; TPR, prot 99.6 1.3E-14 4.3E-19 129.0 12.2 199 363-564 22-224 (243)
52 3u4t_A TPR repeat-containing p 99.6 1.3E-13 4.5E-18 124.7 19.1 190 124-322 5-206 (272)
53 2h6f_A Protein farnesyltransfe 99.6 2.9E-14 9.9E-19 133.9 13.9 227 331-563 98-349 (382)
54 3vtx_A MAMA; tetratricopeptide 99.6 3.6E-14 1.2E-18 119.9 13.2 165 395-563 4-171 (184)
55 1ouv_A Conserved hypothetical 99.5 1E-12 3.5E-17 118.9 22.5 228 262-533 4-256 (273)
56 4abn_A Tetratricopeptide repea 99.5 1.8E-14 6.1E-19 140.9 11.6 206 347-557 85-316 (474)
57 2vq2_A PILW, putative fimbrial 99.5 2.3E-13 8E-18 119.1 17.5 207 295-538 8-221 (225)
58 4a1s_A PINS, partner of inscut 99.5 2E-14 6.9E-19 138.8 11.1 266 266-561 50-371 (411)
59 3ro2_A PINS homolog, G-protein 99.5 8E-14 2.7E-18 130.5 14.3 200 364-563 83-333 (338)
60 3spa_A Mtrpol, DNA-directed RN 99.5 3.5E-15 1.2E-19 149.5 4.5 146 296-481 128-286 (1134)
61 3sf4_A G-protein-signaling mod 99.5 8.6E-14 2.9E-18 134.1 13.5 291 262-552 7-366 (406)
62 3sf4_A G-protein-signaling mod 99.5 1.5E-14 5E-19 139.5 6.8 285 232-516 8-364 (406)
63 3vtx_A MAMA; tetratricopeptide 99.5 2.1E-13 7.2E-18 115.1 12.6 169 362-534 3-176 (184)
64 4e6h_A MRNA 3'-END-processing 99.5 3E-11 1E-15 121.2 28.7 400 120-533 64-575 (679)
65 4e6h_A MRNA 3'-END-processing 99.5 1.3E-10 4.5E-15 116.5 32.9 415 88-509 63-584 (679)
66 4a1s_A PINS, partner of inscut 99.5 1.6E-13 5.5E-18 132.5 11.0 259 62-324 50-372 (411)
67 4gyw_A UDP-N-acetylglucosamine 99.5 1.7E-13 5.7E-18 139.1 10.6 162 395-561 8-173 (723)
68 3ro2_A PINS homolog, G-protein 99.4 5E-13 1.7E-17 125.0 12.5 270 204-531 7-335 (338)
69 3ulq_A Response regulator aspa 99.4 7.6E-13 2.6E-17 126.2 12.8 163 366-528 186-368 (383)
70 3ulq_A Response regulator aspa 99.4 2.3E-12 7.7E-17 123.0 14.6 220 208-460 109-368 (383)
71 3as5_A MAMA; tetratricopeptide 99.4 1.2E-12 4E-17 110.7 11.3 161 400-563 12-174 (186)
72 2ond_A Cleavage stimulation fa 99.4 8.9E-12 3E-16 114.6 17.6 220 312-535 33-277 (308)
73 2ond_A Cleavage stimulation fa 99.4 9.5E-11 3.3E-15 107.7 23.8 213 347-564 33-272 (308)
74 4i17_A Hypothetical protein; T 99.4 5.2E-12 1.8E-16 110.7 14.1 200 331-542 8-223 (228)
75 4abn_A Tetratricopeptide repea 99.4 1.6E-12 5.6E-17 127.0 11.4 203 45-259 84-318 (474)
76 4i17_A Hypothetical protein; T 99.4 2.8E-12 9.7E-17 112.4 11.8 192 362-565 5-212 (228)
77 3nf1_A KLC 1, kinesin light ch 99.4 1.1E-12 3.8E-17 121.2 9.4 232 330-561 27-306 (311)
78 3nf1_A KLC 1, kinesin light ch 99.3 1.4E-12 4.7E-17 120.5 8.0 241 264-531 27-310 (311)
79 1hz4_A MALT regulatory protein 99.3 2E-10 6.9E-15 109.0 23.1 287 267-563 17-350 (373)
80 3q15_A PSP28, response regulat 99.3 9.1E-11 3.1E-15 111.5 20.4 301 198-527 6-364 (378)
81 3as5_A MAMA; tetratricopeptide 99.3 3.2E-11 1.1E-15 101.7 15.5 169 365-536 9-181 (186)
82 3q15_A PSP28, response regulat 99.3 7.3E-12 2.5E-16 119.1 11.4 196 365-561 142-364 (378)
83 4gyw_A UDP-N-acetylglucosamine 99.2 1.3E-11 4.5E-16 125.3 9.7 166 361-531 6-177 (723)
84 4ga2_A E3 SUMO-protein ligase 99.2 2.5E-12 8.7E-17 103.8 3.3 142 402-548 3-149 (150)
85 1hz4_A MALT regulatory protein 99.2 2.8E-10 9.5E-15 108.0 17.6 289 237-531 18-352 (373)
86 3edt_B KLC 2, kinesin light ch 99.2 5.1E-11 1.8E-15 108.1 10.0 221 341-561 12-280 (283)
87 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.4E-10 1.2E-14 98.7 14.4 186 363-568 3-219 (225)
88 3qky_A Outer membrane assembly 99.2 2.5E-10 8.6E-15 102.2 13.6 100 361-460 12-126 (261)
89 3mv2_B Coatomer subunit epsilo 99.2 1.3E-09 4.4E-14 96.8 17.6 242 272-534 21-288 (310)
90 1qqe_A Vesicular transport pro 99.2 1.6E-10 5.6E-15 105.1 12.4 226 313-559 3-263 (292)
91 3qky_A Outer membrane assembly 99.2 2.2E-10 7.5E-15 102.6 13.0 184 329-533 14-229 (261)
92 4ga2_A E3 SUMO-protein ligase 99.2 3.2E-11 1.1E-15 97.3 5.8 125 437-564 3-131 (150)
93 1qqe_A Vesicular transport pro 99.1 1.2E-09 4.1E-14 99.4 14.4 174 45-233 33-230 (292)
94 3rjv_A Putative SEL1 repeat pr 99.1 2.2E-09 7.4E-14 92.3 15.3 173 383-564 5-199 (212)
95 2fo7_A Synthetic consensus TPR 99.1 4.6E-10 1.6E-14 88.8 10.2 128 399-561 4-131 (136)
96 2pzi_A Probable serine/threoni 99.1 2.5E-10 8.4E-15 116.8 10.2 168 375-548 402-583 (681)
97 2r5s_A Uncharacterized protein 99.1 3.1E-10 1.1E-14 94.6 8.9 159 398-561 8-172 (176)
98 3gyz_A Chaperone protein IPGC; 99.1 4.2E-11 1.4E-15 95.9 3.1 102 462-563 30-134 (151)
99 3edt_B KLC 2, kinesin light ch 99.1 1.2E-09 4E-14 99.1 12.9 166 364-529 85-282 (283)
100 3mv2_B Coatomer subunit epsilo 99.1 1.2E-08 4E-13 90.7 18.5 176 383-563 85-283 (310)
101 3qou_A Protein YBBN; thioredox 99.1 7.4E-10 2.5E-14 100.3 11.1 173 382-560 104-282 (287)
102 2fo7_A Synthetic consensus TPR 99.0 3.9E-09 1.3E-13 83.3 13.3 123 365-490 2-126 (136)
103 2vsy_A XCC0866; transferase, g 99.0 9.4E-10 3.2E-14 110.7 11.2 159 377-540 2-169 (568)
104 4gco_A Protein STI-1; structur 99.0 5.9E-10 2E-14 86.6 7.2 113 427-542 8-124 (126)
105 3urz_A Uncharacterized protein 99.0 1.9E-09 6.3E-14 92.5 10.8 159 368-532 8-190 (208)
106 2r5s_A Uncharacterized protein 99.0 5.2E-09 1.8E-13 87.0 12.4 154 62-228 8-170 (176)
107 2pzi_A Probable serine/threoni 99.0 7.3E-09 2.5E-13 105.9 15.8 144 362-511 431-580 (681)
108 2ifu_A Gamma-SNAP; membrane fu 99.0 5.7E-09 1.9E-13 95.7 13.5 220 308-554 4-253 (307)
109 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.3E-08 4.6E-13 88.4 14.6 185 330-535 4-220 (225)
110 3urz_A Uncharacterized protein 98.9 6.1E-09 2.1E-13 89.3 11.7 108 125-244 7-133 (208)
111 2ifu_A Gamma-SNAP; membrane fu 98.9 2.9E-09 9.9E-14 97.6 9.8 196 343-560 4-222 (307)
112 2vsy_A XCC0866; transferase, g 98.9 9E-09 3.1E-13 103.5 14.3 145 344-493 3-154 (568)
113 2vgx_A Chaperone SYCD; alterna 98.9 9.6E-10 3.3E-14 88.2 5.8 99 433-534 23-124 (148)
114 4gco_A Protein STI-1; structur 98.9 1.5E-09 5.2E-14 84.2 6.7 102 463-564 8-112 (126)
115 3qou_A Protein YBBN; thioredox 98.9 8.3E-09 2.8E-13 93.4 12.4 171 45-228 102-281 (287)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.9 9E-09 3.1E-13 88.8 12.0 129 398-532 8-154 (213)
117 4f3v_A ESX-1 secretion system 98.9 5.3E-09 1.8E-13 91.6 8.3 184 376-564 18-239 (282)
118 2c2l_A CHIP, carboxy terminus 98.9 6.3E-09 2.2E-13 93.8 9.0 191 363-561 3-198 (281)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5E-08 1.7E-12 84.0 14.0 152 366-530 8-174 (213)
120 3rjv_A Putative SEL1 repeat pr 98.8 1.7E-07 5.9E-12 80.4 16.4 161 363-530 17-199 (212)
121 2xcb_A PCRH, regulatory protei 98.8 7.4E-09 2.5E-13 82.6 7.0 99 433-534 20-121 (142)
122 2uy1_A Cleavage stimulation fa 98.8 7.9E-07 2.7E-11 86.6 22.6 372 104-527 7-412 (493)
123 3dra_A Protein farnesyltransfe 98.8 2.8E-07 9.7E-12 82.8 17.5 227 306-538 43-298 (306)
124 3gyz_A Chaperone protein IPGC; 98.8 2.5E-08 8.6E-13 79.7 9.6 105 426-533 30-138 (151)
125 4f3v_A ESX-1 secretion system 98.8 2.1E-08 7.1E-13 87.9 9.7 175 7-186 18-235 (282)
126 1a17_A Serine/threonine protei 98.8 2E-08 6.8E-13 82.5 9.3 126 433-560 15-144 (166)
127 2qfc_A PLCR protein; TPR, HTH, 98.8 6.8E-08 2.3E-12 87.9 13.6 162 399-560 78-264 (293)
128 2e2e_A Formate-dependent nitri 98.8 6.2E-09 2.1E-13 86.7 6.1 126 406-534 20-150 (177)
129 2kck_A TPR repeat; tetratricop 98.8 3.1E-08 1.1E-12 75.0 9.3 101 466-566 5-110 (112)
130 3dra_A Protein farnesyltransfe 98.8 1.9E-06 6.6E-11 77.4 22.2 211 347-561 50-286 (306)
131 3u3w_A Transcriptional activat 98.8 7.2E-08 2.5E-12 87.7 13.0 159 402-560 81-264 (293)
132 2lni_A Stress-induced-phosphop 98.8 2.7E-08 9.3E-13 78.2 8.8 113 433-548 18-133 (133)
133 2uy1_A Cleavage stimulation fa 98.8 3.9E-07 1.3E-11 88.8 18.4 357 161-560 17-411 (493)
134 1hxi_A PEX5, peroxisome target 98.7 1.2E-08 4.2E-13 78.4 5.9 97 468-564 18-116 (121)
135 1p5q_A FKBP52, FK506-binding p 98.7 1.8E-08 6.1E-13 93.4 8.0 124 433-559 149-291 (336)
136 2vyi_A SGTA protein; chaperone 98.7 3.2E-08 1.1E-12 77.4 8.3 117 432-550 13-131 (131)
137 2vgx_A Chaperone SYCD; alterna 98.7 1.2E-08 4.2E-13 81.7 5.5 109 453-564 9-120 (148)
138 3u3w_A Transcriptional activat 98.7 3.5E-07 1.2E-11 83.2 15.9 160 369-528 80-266 (293)
139 1na0_A Designed protein CTPR3; 98.7 5E-08 1.7E-12 75.5 8.8 114 432-547 10-125 (125)
140 2qfc_A PLCR protein; TPR, HTH, 98.7 2.7E-07 9.1E-12 83.9 14.7 164 365-528 76-266 (293)
141 3upv_A Heat shock protein STI1 98.7 2.5E-08 8.7E-13 77.5 6.7 91 471-561 8-100 (126)
142 2c2l_A CHIP, carboxy terminus 98.6 5.4E-08 1.9E-12 87.7 8.1 92 125-228 7-98 (281)
143 4gcn_A Protein STI-1; structur 98.6 3.1E-08 1E-12 77.0 5.5 91 471-561 12-111 (127)
144 3gw4_A Uncharacterized protein 98.6 3.1E-07 1.1E-11 78.2 12.0 127 433-559 28-173 (203)
145 3sz7_A HSC70 cochaperone (SGT) 98.6 4.1E-08 1.4E-12 80.5 6.1 107 431-540 11-120 (164)
146 2xcb_A PCRH, regulatory protei 98.6 4.4E-08 1.5E-12 78.0 5.8 101 463-563 13-116 (142)
147 3q49_B STIP1 homology and U bo 98.6 9.9E-08 3.4E-12 75.4 7.8 100 430-531 8-109 (137)
148 2fbn_A 70 kDa peptidylprolyl i 98.6 1.4E-07 4.6E-12 80.2 8.0 96 468-563 89-187 (198)
149 1elw_A TPR1-domain of HOP; HOP 98.6 1.5E-07 5.1E-12 71.9 7.5 107 432-540 5-113 (118)
150 2e2e_A Formate-dependent nitri 98.6 1.9E-07 6.6E-12 77.6 8.7 124 441-566 20-148 (177)
151 2lni_A Stress-induced-phosphop 98.6 1.8E-07 6.3E-12 73.3 8.1 99 466-564 15-115 (133)
152 1elw_A TPR1-domain of HOP; HOP 98.5 2.8E-07 9.5E-12 70.4 8.5 96 468-563 5-102 (118)
153 2dba_A Smooth muscle cell asso 98.5 4.2E-07 1.4E-11 72.8 9.8 108 433-543 30-143 (148)
154 2dba_A Smooth muscle cell asso 98.5 2.7E-07 9.2E-12 73.9 8.3 99 466-564 27-130 (148)
155 3sz7_A HSC70 cochaperone (SGT) 98.5 2.6E-07 9E-12 75.6 8.4 94 395-493 10-105 (164)
156 3gw4_A Uncharacterized protein 98.5 4.8E-07 1.6E-11 77.0 10.2 154 376-529 4-177 (203)
157 3upv_A Heat shock protein STI1 98.5 1.9E-07 6.4E-12 72.5 6.7 108 433-542 6-121 (126)
158 2if4_A ATFKBP42; FKBP-like, al 98.5 1.8E-07 6.1E-12 86.7 7.6 148 398-565 181-331 (338)
159 2xev_A YBGF; tetratricopeptide 98.5 1.7E-07 5.7E-12 73.2 6.1 97 435-534 6-111 (129)
160 1na0_A Designed protein CTPR3; 98.5 3E-07 1E-11 71.0 7.4 98 467-564 9-108 (125)
161 2hr2_A Hypothetical protein; a 98.5 1.6E-07 5.3E-12 74.1 5.2 105 433-560 13-129 (159)
162 2kck_A TPR repeat; tetratricop 98.5 1.2E-06 4E-11 66.1 9.9 99 433-533 8-111 (112)
163 4b4t_Q 26S proteasome regulato 98.4 3.1E-06 1E-10 81.9 15.2 190 371-560 11-243 (434)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 7.1E-07 2.4E-11 86.5 10.5 127 433-559 270-412 (457)
165 2vyi_A SGTA protein; chaperone 98.4 3.7E-07 1.3E-11 71.2 6.9 99 466-564 11-111 (131)
166 1a17_A Serine/threonine protei 98.4 1.6E-06 5.4E-11 71.0 10.9 127 398-527 15-145 (166)
167 1hxi_A PEX5, peroxisome target 98.4 5.2E-07 1.8E-11 69.2 7.0 98 433-533 19-119 (121)
168 1wao_1 Serine/threonine protei 98.4 3.5E-07 1.2E-11 89.0 7.2 118 437-557 12-134 (477)
169 3q49_B STIP1 homology and U bo 98.4 5.2E-07 1.8E-11 71.1 6.7 97 466-562 8-106 (137)
170 2hr2_A Hypothetical protein; a 98.4 3.6E-07 1.2E-11 72.0 5.5 113 398-541 13-144 (159)
171 3q7a_A Farnesyltransferase alp 98.4 6.7E-05 2.3E-09 68.2 20.8 169 308-482 67-257 (349)
172 3q7a_A Farnesyltransferase alp 98.4 1.2E-05 4E-10 73.1 15.7 213 345-561 69-330 (349)
173 3k9i_A BH0479 protein; putativ 98.4 1.3E-07 4.5E-12 72.2 2.6 91 443-534 2-96 (117)
174 4gcn_A Protein STI-1; structur 98.4 1.9E-06 6.4E-11 66.7 9.1 103 124-235 10-118 (127)
175 3rkv_A Putative peptidylprolyl 98.3 2.9E-07 9.8E-12 75.2 4.4 102 432-533 12-131 (162)
176 2fbn_A 70 kDa peptidylprolyl i 98.3 1.1E-07 3.7E-12 80.7 1.8 96 469-564 40-153 (198)
177 1ihg_A Cyclophilin 40; ppiase 98.3 5.9E-07 2E-11 84.1 6.8 90 466-555 272-363 (370)
178 2xev_A YBGF; tetratricopeptide 98.3 2.5E-06 8.7E-11 66.3 9.2 89 473-561 8-104 (129)
179 1p5q_A FKBP52, FK506-binding p 98.3 3.2E-06 1.1E-10 78.2 11.2 127 396-527 147-293 (336)
180 1elr_A TPR2A-domain of HOP; HO 98.3 6.5E-07 2.2E-11 69.8 5.1 95 469-563 6-109 (131)
181 1elr_A TPR2A-domain of HOP; HO 98.3 1.9E-06 6.5E-11 67.1 7.3 106 434-542 7-121 (131)
182 3ro3_A PINS homolog, G-protein 98.3 1.3E-06 4.6E-11 71.0 6.7 91 470-560 52-156 (164)
183 3rkv_A Putative peptidylprolyl 98.3 4.4E-07 1.5E-11 74.1 3.6 93 398-493 13-123 (162)
184 3k9i_A BH0479 protein; putativ 98.2 4.9E-07 1.7E-11 69.0 3.2 60 501-560 29-88 (117)
185 1dce_A Protein (RAB geranylger 98.2 1.6E-05 5.4E-10 78.8 14.6 169 378-551 43-244 (567)
186 3dss_A Geranylgeranyl transfer 98.2 4.3E-05 1.5E-09 69.1 15.8 179 381-563 91-305 (331)
187 2if4_A ATFKBP42; FKBP-like, al 98.2 1.8E-06 6.2E-11 79.9 7.0 151 364-534 179-334 (338)
188 3dss_A Geranylgeranyl transfer 98.2 7.8E-05 2.7E-09 67.4 17.2 191 346-541 90-317 (331)
189 3ro3_A PINS homolog, G-protein 98.2 3.3E-06 1.1E-10 68.6 7.3 132 399-530 12-160 (164)
190 3ma5_A Tetratricopeptide repea 98.2 3.4E-06 1.2E-10 62.0 6.5 65 498-562 6-70 (100)
191 2l6j_A TPR repeat-containing p 98.2 2.5E-07 8.6E-12 69.8 0.1 92 467-558 4-103 (111)
192 3n71_A Histone lysine methyltr 98.2 2.9E-06 1E-10 81.8 7.3 123 441-563 319-465 (490)
193 4b4t_Q 26S proteasome regulato 98.1 1.3E-05 4.5E-10 77.4 11.7 159 403-561 11-203 (434)
194 1wao_1 Serine/threonine protei 98.1 8.6E-06 3E-10 79.2 10.2 116 371-491 13-134 (477)
195 2kat_A Uncharacterized protein 98.1 3.6E-06 1.2E-10 63.9 5.5 80 449-531 3-85 (115)
196 3bee_A Putative YFRE protein; 98.1 8.9E-06 3.1E-10 58.2 6.4 73 496-569 3-78 (93)
197 1zu2_A Mitochondrial import re 98.1 7.2E-07 2.5E-11 70.1 0.6 87 442-531 13-123 (158)
198 1na3_A Designed protein CTPR2; 98.0 6.5E-06 2.2E-10 59.1 4.9 80 468-547 10-91 (91)
199 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 5.6E-06 1.9E-10 80.2 5.8 120 443-565 246-383 (457)
200 1ihg_A Cyclophilin 40; ppiase 98.0 5.1E-06 1.7E-10 77.8 5.2 67 498-564 272-338 (370)
201 1klx_A Cysteine rich protein B 97.9 2.2E-05 7.5E-10 61.6 6.9 89 473-563 31-127 (138)
202 2l6j_A TPR repeat-containing p 97.9 1.7E-05 5.7E-10 59.5 5.6 68 498-565 3-70 (111)
203 1dce_A Protein (RAB geranylger 97.9 3.1E-05 1.1E-09 76.7 8.5 152 410-565 43-224 (567)
204 1zu2_A Mitochondrial import re 97.8 6E-06 2.1E-10 64.9 2.3 87 478-564 13-122 (158)
205 3lvg_A Clathrin heavy chain 1; 97.8 9.1E-06 3.1E-10 74.9 3.0 263 121-417 53-325 (624)
206 1na3_A Designed protein CTPR2; 97.7 3.9E-05 1.3E-09 54.9 4.9 66 498-563 8-73 (91)
207 3n71_A Histone lysine methyltr 97.7 9.5E-05 3.2E-09 71.4 8.6 123 405-527 318-463 (490)
208 1klx_A Cysteine rich protein B 97.6 0.00068 2.3E-08 53.0 11.5 112 410-530 9-128 (138)
209 3lvg_A Clathrin heavy chain 1; 97.6 2.6E-05 9E-10 71.9 2.9 224 4-253 63-324 (624)
210 2kc7_A BFR218_protein; tetratr 97.6 2.8E-05 9.7E-10 56.8 2.3 79 473-559 6-87 (99)
211 2kat_A Uncharacterized protein 97.6 4.3E-05 1.5E-09 57.7 3.3 57 433-492 21-78 (115)
212 3qww_A SET and MYND domain-con 97.5 0.00013 4.5E-09 69.1 6.1 81 480-560 311-409 (433)
213 2kc7_A BFR218_protein; tetratr 97.5 0.00011 3.7E-09 53.6 4.3 62 505-566 6-68 (99)
214 3ly7_A Transcriptional activat 97.4 0.003 1E-07 57.3 13.4 139 393-533 191-344 (372)
215 3ma5_A Tetratricopeptide repea 97.3 0.00034 1.2E-08 51.0 5.8 62 396-459 7-69 (100)
216 3qwp_A SET and MYND domain-con 97.2 0.00043 1.5E-08 65.8 6.4 84 477-560 297-398 (429)
217 3qww_A SET and MYND domain-con 97.2 0.0011 3.6E-08 62.9 8.4 92 443-534 310-422 (433)
218 3mkq_A Coatomer beta'-subunit; 97.0 0.021 7.3E-07 59.9 18.2 154 5-186 609-763 (814)
219 3ly7_A Transcriptional activat 97.0 0.0022 7.7E-08 58.2 8.9 135 427-565 190-342 (372)
220 3u64_A Protein TP_0956; tetrat 97.0 0.0011 3.8E-08 57.4 6.6 86 484-569 180-276 (301)
221 1wy6_A Hypothetical protein ST 97.0 0.022 7.6E-07 42.3 12.0 141 406-565 17-157 (172)
222 3bee_A Putative YFRE protein; 97.0 0.0019 6.4E-08 46.0 6.5 69 464-532 3-76 (93)
223 3mkq_A Coatomer beta'-subunit; 97.0 0.025 8.5E-07 59.4 18.0 75 64-148 633-707 (814)
224 4ady_A RPN2, 26S proteasome re 96.9 0.52 1.8E-05 48.7 28.7 260 241-504 382-666 (963)
225 3qwp_A SET and MYND domain-con 96.9 0.0022 7.5E-08 60.9 7.9 97 439-535 295-412 (429)
226 1pc2_A Mitochondria fission pr 96.8 0.0021 7.1E-08 49.9 5.6 89 445-535 12-107 (152)
227 2v5f_A Prolyl 4-hydroxylase su 96.7 0.0025 8.5E-08 46.7 5.5 42 498-539 45-86 (104)
228 1pc2_A Mitochondria fission pr 96.7 0.0014 4.9E-08 50.8 4.1 82 484-565 15-103 (152)
229 3mkq_B Coatomer subunit alpha; 96.6 0.11 3.8E-06 41.4 14.5 103 69-186 14-116 (177)
230 1qsa_A Protein (soluble lytic 96.6 0.66 2.2E-05 46.0 25.7 303 212-527 16-347 (618)
231 2v5f_A Prolyl 4-hydroxylase su 96.3 0.0059 2E-07 44.6 5.3 67 498-564 4-77 (104)
232 1nzn_A CGI-135 protein, fissio 95.8 0.058 2E-06 40.2 8.5 89 446-536 16-111 (126)
233 3mkq_B Coatomer subunit alpha; 95.7 0.38 1.3E-05 38.4 13.3 46 133-186 16-61 (177)
234 4gns_B Protein CSD3, chitin bi 95.6 0.079 2.7E-06 53.5 11.1 54 506-559 344-397 (754)
235 4h7y_A Dual specificity protei 95.4 0.012 4.2E-07 44.8 3.6 102 430-534 12-129 (161)
236 3u64_A Protein TP_0956; tetrat 95.4 0.021 7.1E-07 49.7 5.4 105 447-560 179-296 (301)
237 4h7y_A Dual specificity protei 94.8 0.064 2.2E-06 41.0 5.9 98 393-493 10-120 (161)
238 3ffl_A Anaphase-promoting comp 94.7 0.14 4.6E-06 40.1 7.7 116 368-497 24-152 (167)
239 1nzn_A CGI-135 protein, fissio 94.4 0.039 1.3E-06 41.1 3.9 71 496-566 32-107 (126)
240 3ltm_A Alpha-REP4; protein eng 94.2 2.1 7E-05 35.7 17.5 120 50-175 23-142 (211)
241 1wy6_A Hypothetical protein ST 93.2 0.8 2.7E-05 34.3 8.8 130 43-186 21-152 (172)
242 1y8m_A FIS1; mitochondria, unk 93.2 0.32 1.1E-05 36.9 6.9 72 463-534 35-112 (144)
243 1y8m_A FIS1; mitochondria, unk 92.8 1.1 3.8E-05 34.0 9.5 70 428-498 36-109 (144)
244 3o48_A Mitochondria fission 1 92.5 0.13 4.5E-06 38.4 4.0 74 462-535 35-114 (134)
245 3ltj_A Alpharep-4; protein eng 92.5 3.8 0.00013 33.7 18.3 83 55-137 23-105 (201)
246 3o48_A Mitochondria fission 1 92.5 0.46 1.6E-05 35.6 6.9 71 428-499 37-111 (134)
247 3ffl_A Anaphase-promoting comp 92.2 0.74 2.5E-05 36.1 8.1 104 124-228 22-148 (167)
248 4ady_A RPN2, 26S proteasome re 92.1 13 0.00043 38.8 29.0 450 63-526 148-656 (963)
249 3ltm_A Alpha-REP4; protein eng 92.1 4.5 0.00015 33.6 17.8 162 15-186 22-183 (211)
250 3ltj_A Alpharep-4; protein eng 91.0 5.7 0.0002 32.6 18.7 166 11-186 13-178 (201)
251 3txn_A 26S proteasome regulato 90.5 5.7 0.0002 36.7 13.6 159 367-526 22-208 (394)
252 4fhn_B Nucleoporin NUP120; pro 90.3 4 0.00014 44.4 14.5 52 65-117 817-868 (1139)
253 4b4t_P 26S proteasome regulato 90.1 3.8 0.00013 38.9 12.6 90 471-560 141-245 (445)
254 1qsa_A Protein (soluble lytic 89.6 18 0.0006 36.0 38.5 402 72-525 18-439 (618)
255 3lpz_A GET4 (YOR164C homolog); 89.5 11 0.00039 33.6 16.9 112 366-490 37-159 (336)
256 2ff4_A Probable regulatory pro 88.4 0.57 1.9E-05 43.7 5.5 67 503-569 175-246 (388)
257 1v54_E Cytochrome C oxidase po 88.2 1.8 6.1E-05 30.4 6.3 63 310-372 25-87 (109)
258 4b4t_P 26S proteasome regulato 87.6 19 0.00066 34.1 18.1 94 400-493 141-244 (445)
259 1v54_E Cytochrome C oxidase po 86.5 4.8 0.00017 28.3 7.6 61 412-474 26-86 (109)
260 4fhn_B Nucleoporin NUP120; pro 86.5 7.1 0.00024 42.4 13.3 82 202-283 899-990 (1139)
261 2uwj_G Type III export protein 86.1 6.8 0.00023 27.3 8.2 53 271-325 46-98 (115)
262 2wpv_A GET4, UPF0363 protein Y 86.0 18 0.00062 32.1 16.9 114 366-491 35-158 (312)
263 2ff4_A Probable regulatory pro 85.5 3.5 0.00012 38.3 9.1 72 400-472 175-250 (388)
264 4b4t_R RPN7, 26S proteasome re 85.3 4.9 0.00017 38.0 10.1 92 468-559 132-234 (429)
265 2uwj_G Type III export protein 85.3 7.5 0.00026 27.1 8.2 72 43-117 20-94 (115)
266 1oyz_A Hypothetical protein YI 85.1 18 0.00063 31.4 20.9 18 200-217 140-157 (280)
267 2p58_C Putative type III secre 85.0 7.9 0.00027 27.1 9.1 74 43-119 21-97 (116)
268 3lpz_A GET4 (YOR164C homolog); 84.9 21 0.00073 31.9 19.6 166 267-459 38-215 (336)
269 3txn_A 26S proteasome regulato 84.8 24 0.00084 32.5 22.9 25 300-324 104-128 (394)
270 1zbp_A Hypothetical protein VP 83.4 0.53 1.8E-05 40.3 2.3 56 476-531 6-63 (273)
271 4gns_B Protein CSD3, chitin bi 83.3 3.5 0.00012 41.8 8.4 120 64-186 252-398 (754)
272 1zbp_A Hypothetical protein VP 83.0 2.1 7.2E-05 36.7 5.7 54 130-186 5-58 (273)
273 1oyz_A Hypothetical protein YI 82.7 23 0.0008 30.7 19.4 175 57-248 34-221 (280)
274 2y69_E Cytochrome C oxidase su 82.3 4.3 0.00015 30.3 6.3 62 311-372 69-130 (152)
275 2y69_E Cytochrome C oxidase su 79.1 12 0.0004 28.0 7.6 60 414-475 71-130 (152)
276 2wpv_A GET4, UPF0363 protein Y 77.8 37 0.0013 30.1 19.6 165 269-460 38-217 (312)
277 4b4t_R RPN7, 26S proteasome re 77.3 7 0.00024 36.9 8.0 96 365-460 132-237 (429)
278 3esl_A Checkpoint serine/threo 74.1 23 0.00078 28.8 8.9 56 409-465 92-148 (202)
279 4b4t_S RPN3, 26S proteasome re 72.7 11 0.00037 36.1 7.8 66 123-189 232-300 (523)
280 4a1g_A Mitotic checkpoint seri 65.9 43 0.0015 25.8 8.5 52 413-465 82-134 (152)
281 3esl_A Checkpoint serine/threo 63.6 29 0.00099 28.2 7.5 50 480-529 92-145 (202)
282 3eiq_C Programmed cell death p 60.8 98 0.0033 28.1 11.3 29 28-59 56-84 (358)
283 2wvi_A Mitotic checkpoint seri 59.9 61 0.0021 25.4 8.6 52 414-466 78-130 (164)
284 4a1g_A Mitotic checkpoint seri 51.0 62 0.0021 24.9 7.1 30 499-528 101-130 (152)
285 4gq2_M Nucleoporin NUP120; bet 50.6 1.3E+02 0.0045 31.8 12.0 85 66-151 816-926 (950)
286 4b4t_S RPN3, 26S proteasome re 50.3 43 0.0015 32.1 7.4 58 432-493 232-296 (523)
287 3bqo_A Telomeric repeat-bindin 45.7 50 0.0017 26.6 5.9 44 506-549 124-167 (211)
288 2p58_C Putative type III secre 45.6 77 0.0026 22.3 11.0 82 135-234 20-101 (116)
289 4aez_C MAD3, mitotic spindle c 44.9 82 0.0028 26.1 7.4 52 413-465 131-183 (223)
290 3mv2_A Coatomer subunit alpha; 43.1 1.8E+02 0.0061 25.8 10.1 58 490-561 196-255 (325)
291 2wvi_A Mitotic checkpoint seri 40.1 86 0.0029 24.5 6.5 50 480-529 76-126 (164)
292 3bqo_A Telomeric repeat-bindin 39.8 1.3E+02 0.0046 24.2 7.4 45 107-151 94-146 (211)
293 1ya0_A SMG-7 transcript varian 39.0 47 0.0016 31.8 5.9 56 505-560 158-213 (497)
294 4gq2_M Nucleoporin NUP120; bet 37.6 2.7E+02 0.0091 29.5 11.9 89 97-186 816-924 (950)
295 1bpo_A Protein (clathrin); cla 35.1 2.9E+02 0.01 26.0 12.3 140 378-525 343-482 (494)
296 3i5p_A Nucleoporin NUP170; hel 33.2 2.4E+02 0.0081 27.2 9.7 68 496-563 175-247 (525)
297 2d2s_A Exocyst complex compone 31.7 1.7E+02 0.0058 24.6 7.6 22 301-322 24-45 (235)
298 3hra_A Ankyrin repeat family p 31.4 1.9E+02 0.0066 22.8 9.3 18 274-291 12-29 (201)
299 2d2s_A Exocyst complex compone 30.2 90 0.0031 26.3 5.6 90 128-228 24-117 (235)
300 2nsz_A Programmed cell death p 30.0 1.3E+02 0.0045 22.3 5.9 25 162-186 10-34 (129)
301 3bu8_A Telomeric repeat-bindin 29.7 1.1E+02 0.0037 25.1 5.5 18 476-493 123-140 (235)
302 1wdy_A 2-5A-dependent ribonucl 29.6 2.6E+02 0.0087 23.6 11.6 56 273-329 154-213 (285)
303 3ygs_P Procaspase 9; apoptosis 28.3 1.1E+02 0.0037 21.3 4.9 38 216-253 51-88 (97)
304 3kea_A K1L; tropism, ANK repea 27.1 2.4E+02 0.0082 24.2 8.3 41 45-85 44-84 (285)
305 1wgl_A TOLL-interacting protei 26.8 93 0.0032 19.3 3.8 16 409-424 36-51 (59)
306 2fe3_A Peroxide operon regulat 26.5 1.5E+02 0.0052 22.4 6.0 43 298-340 24-66 (145)
307 3ygs_P Procaspase 9; apoptosis 25.1 98 0.0034 21.5 4.2 32 75-106 52-83 (97)
308 1wdy_A 2-5A-dependent ribonucl 25.0 2.5E+02 0.0084 23.7 8.1 15 243-257 226-240 (285)
309 2nsz_A Programmed cell death p 23.0 2.3E+02 0.0079 20.9 7.0 61 268-328 11-76 (129)
310 2ion_A PDCD4, programmed cell 22.6 1.2E+02 0.004 23.4 4.6 25 162-186 12-36 (152)
311 3bu8_A Telomeric repeat-bindin 22.2 2.2E+02 0.0075 23.4 6.0 19 440-458 123-141 (235)
312 2b7e_A PRE-mRNA processing pro 21.4 82 0.0028 19.5 2.7 30 311-340 2-31 (59)
313 2ion_A PDCD4, programmed cell 20.9 2.1E+02 0.0071 22.0 5.7 60 268-327 13-77 (152)
314 2xig_A Ferric uptake regulatio 20.7 2.5E+02 0.0085 21.4 6.2 45 297-341 28-72 (150)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-42 Score=351.54 Aligned_cols=506 Identities=9% Similarity=-0.007 Sum_probs=301.3
Q ss_pred CCCHHHHHHHhccCCCCchhHHHHHHHHHHHcCCCCChHHHHHHHhhCC--CCCcchHHHHHHHHHccCCHHHHHHHhhc
Q 036340 8 RREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMP--ERDCVTWNTVISGYAKTGEMEEALRLFNS 85 (579)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (579)
.|.+..+...+..+..+++..|+.++..+.+.|+ +++|..+|+++. .|+..++..++.+|.+.|++++|+.+|++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQ---YKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp ----------------CHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCccCCCCCccccchHHHHHHHHHHHHHHHHccC---chHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 3444444555555544555556666666665555 666666665554 34555555566666666666666666665
Q ss_pred CC--CCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHH
Q 036340 86 MP--ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN 163 (579)
Q Consensus 86 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 163 (579)
+. ++++.+++.++.+|.+.|++++|+++|+++...+... .++... .....+.+.+..+|+
T Consensus 143 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~-------------~~~~~~~~~~~~~~~ 204 (597)
T 2xpi_A 143 EDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKL-------------LMQDGGIKLEASMCY 204 (597)
T ss_dssp TCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------------------------CCCSSCCHHHHHHH
T ss_pred HhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccc-------------cccccccchhHHHHH
Confidence 53 4555556666666666666666666665432222000 000000 000002233455566
Q ss_pred HHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHH---HHhcCCCC----hhHH
Q 036340 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREI---FEQMLERD----TFSW 236 (579)
Q Consensus 164 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~----~~~~ 236 (579)
.++.+|.+.|++++|.++|+++.. .+ +.+...+..++..+...+..+.+... +..+...+ ...|
T Consensus 205 ~l~~~~~~~g~~~~A~~~~~~~~~--------~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 275 (597)
T 2xpi_A 205 LRGQVYTNLSNFDRAKECYKEALM--------VD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------HC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--------hC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHH
Confidence 666666666666666666666541 11 22344444444433333222221111 22222221 2233
Q ss_pred HHHHHHHHhcCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhCCCc
Q 036340 237 NTMISGYIHVLDMEEASNLFVKMPH--PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ---KNLVSWNSMIAGCETNKDY 311 (579)
Q Consensus 237 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 311 (579)
+.++..|.+.|++++|..+|+++.. ++..++..++.+|.+.|++++|..+|+++.+ .+..++..++.++.+.|++
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCH
Confidence 4445555556666666666666653 5666666666666667777777766666642 3455666777777777777
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc
Q 036340 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK 391 (579)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 391 (579)
++|..+++++.+.. ..+..++..++..+.+.|+++.|..+++......+.+..++..++.+|.+.|++++|.++|+++.
T Consensus 356 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 356 NKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777766432 23455555555666666666666666655333344556677788888888888888888888764
Q ss_pred --CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhh---CCCCC
Q 036340 392 --LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEY---GIEPR 466 (579)
Q Consensus 392 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 466 (579)
.+.+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+
T Consensus 435 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 435 RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp HTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred HhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 34467778888888888888888888888887642 3356688888888888888888888888886542 44565
Q ss_pred --cchhHHHHHHhhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhh
Q 036340 467 --IEHFASLVDIVGRHGRLEDAMDLIKGM-PF-EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542 (579)
Q Consensus 467 --~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 542 (579)
..++..++.+|.+.|++++|...++++ .. +.+..+|..++.+|...|++++|...|+++++++|+++.++..++.+
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 567888888888888888888888876 22 33677888888888888888888888888888888888878877777
Q ss_pred hhh
Q 036340 543 YAD 545 (579)
Q Consensus 543 ~~~ 545 (579)
|..
T Consensus 594 ~~~ 596 (597)
T 2xpi_A 594 LEE 596 (597)
T ss_dssp TC-
T ss_pred Hhc
Confidence 653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.3e-41 Score=341.72 Aligned_cols=487 Identities=10% Similarity=-0.020 Sum_probs=393.4
Q ss_pred HHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCC--CCcchHHHHHHHHHhCCCHHHHHHHHHH
Q 036340 70 YAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG--RDSASLSALVSGLIQNGELDEAARVLVK 147 (579)
Q Consensus 70 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 147 (579)
+...|....+...+..+..+++..|+.++..+.+.|++++|+.+|+++.. |+..++..++.++.+.|++++|..+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 44567777777778777778888999999999999999999999998854 6667888899999999999999999998
Q ss_pred hccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccC-------CCCCCCccCCcchHHHHHHHHHHHhcCCHHH
Q 036340 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNC-------DRGEGNVRFKRNIVSWNSMIMCYAKAGDVVS 220 (579)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 220 (579)
+... +++..+++.++.+|.+.|++++|.++|+++.... .......+.+++..+|+.++.+|.+.|++++
T Consensus 143 ~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 143 EDLY----NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp TCGG----GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred Hhcc----ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 8653 6677899999999999999999999999654211 0001122446679999999999999999999
Q ss_pred HHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHH---hhcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHccC
Q 036340 221 AREIFEQMLER---DTFSWNTMISGYIHVLDMEEASNL---FVKMP----HPDTLTWNAMVSGYAQIGNLELALDFFKRM 290 (579)
Q Consensus 221 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~---~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 290 (579)
|.+.|+++++. +...+..+...+...+..+.+... +..+. .....+|+.++..|.+.|++++|.++|+++
T Consensus 219 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 219 AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 99999999764 344555555544433332222111 11111 122345666688899999999999999999
Q ss_pred CC--CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHH
Q 036340 291 PQ--KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINN 368 (579)
Q Consensus 291 ~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 368 (579)
.+ ++..+|+.++..|.+.|++++|..+|+++.+.+.. +..++..++.++...|+.+.|..+++......+.+..++.
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 377 (597)
T 2xpi_A 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL 377 (597)
T ss_dssp TTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 88 78999999999999999999999999999987643 7788999999999999999999999996677788899999
Q ss_pred HHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCc
Q 036340 369 ALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGL 446 (579)
Q Consensus 369 ~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 446 (579)
.++.+|.+.|++++|.++|+++. .+.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|+
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGN 456 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCC
Confidence 99999999999999999999874 34467799999999999999999999999999753 3466799999999999999
Q ss_pred HHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHhhcCCHHH
Q 036340 447 VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-------PFEPD--KAVWGALLGACRVHNNVEL 517 (579)
Q Consensus 447 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~~~~~ 517 (579)
+++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++
T Consensus 457 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 457 ILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999864 2346788999999999999999999999987 34676 7799999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 518 AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 518 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
|+..++++++..|+++.+|..++.+|...|++++|.++++++.+...
T Consensus 535 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 535 AIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999987654
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.3e-29 Score=240.02 Aligned_cols=370 Identities=14% Similarity=0.139 Sum_probs=275.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHH
Q 036340 128 LVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNS 207 (579)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (579)
++..+.+.|++++|++.++.+.+ ..|.+...+..+...+...|++++|...++.+.. ..+.+..+|..
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~---------~~p~~~~~~~~ 72 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWR---QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK---------QNPLLAEAYSN 72 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------cCCCchHHHHH
Confidence 34556677888888888877776 3455666777777778888888888888877752 22456777888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHhhcCC--CC-ChhhHHHHHHHHHhcCCHH
Q 036340 208 MIMCYAKAGDVVSAREIFEQMLE--R-DTFSWNTMISGYIHVLDMEEASNLFVKMP--HP-DTLTWNAMVSGYAQIGNLE 281 (579)
Q Consensus 208 l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~ 281 (579)
++.++.+.|++++|...|+++++ | +..+|..++.++...|++++|...|+++. .| +...+..+...+...|+++
T Consensus 73 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 152 (388)
T 1w3b_A 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHH
Confidence 88888888888888888877743 2 33456666666666666666666666554 23 3345556666666667777
Q ss_pred HHHHHHccCCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhh
Q 036340 282 LALDFFKRMPQ---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTK 358 (579)
Q Consensus 282 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 358 (579)
+|...|+++.+ .+..+|..+...+...|++++|...|+++.+.+
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------------------------- 199 (388)
T 1w3b_A 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--------------------------------- 199 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---------------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------------------
Confidence 77777666553 234566666666666666666666666665532
Q ss_pred cCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCC-CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHH
Q 036340 359 TVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLK-NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFI 435 (579)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~ 435 (579)
+.+...+..+...+...|++++|...|++.. ..| +..++..++.++...|++++|+..|+++.+. .|+ ..++.
T Consensus 200 --p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 275 (388)
T 1w3b_A 200 --PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYC 275 (388)
T ss_dssp --TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHH
T ss_pred --CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 2334455667778888888888888888764 334 5677888999999999999999999999864 454 45888
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC
Q 036340 436 SVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHN 513 (579)
Q Consensus 436 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~ 513 (579)
.+...+...|++++|...++++++. .+++..++..++.++.+.|++++|...++++ ...| +..++..++.++.+.|
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 8899999999999999999999864 2446788889999999999999999999887 4444 6778899999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCC
Q 036340 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548 (579)
Q Consensus 514 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 548 (579)
++++|+..|+++++..|+++.++..++.++...|+
T Consensus 354 ~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 354 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999988877664
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=9.3e-28 Score=230.68 Aligned_cols=349 Identities=14% Similarity=0.104 Sum_probs=305.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCCHH
Q 036340 208 MIMCYAKAGDVVSAREIFEQMLE--R-DTFSWNTMISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGYAQIGNLE 281 (579)
Q Consensus 208 l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 281 (579)
++..+.+.|++++|.+.+.++.+ | +...+..+...+...|++++|...++... +.+..++..++..+.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 46678899999999999998854 3 45667778888999999999999998876 567789999999999999999
Q ss_pred HHHHHHccCCC--C-ChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC-hhhHHHHHHhccCCCchhhHHHHHHHHh
Q 036340 282 LALDFFKRMPQ--K-NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD-RHTFSSILSMSSGIVDLHLGMQIHQMVT 357 (579)
Q Consensus 282 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 357 (579)
+|...|+++.+ | +...|..++.++...|++++|...|+++.+.. |+ ...+..+...+...|+++.|...++...
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999998864 4 45579999999999999999999999998764 44 4456667778889999999999999966
Q ss_pred hcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhH
Q 036340 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITF 434 (579)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~ 434 (579)
...+.+..++..+...+...|++++|...|+++. .+.+...|..+...+...|++++|+..+++..+. .|+ ..++
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVH 240 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHH
Confidence 6677788899999999999999999999999875 3345667889999999999999999999999864 565 5588
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHhh
Q 036340 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-P-FEPDKAVWGALLGACRV 511 (579)
Q Consensus 435 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~ 511 (579)
..+..++...|++++|...++++++. .| +..++..++.++.+.|++++|...++++ . .+++..++..++..+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 89999999999999999999999853 44 5678999999999999999999999988 2 34578899999999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 512 HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 512 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
.|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999998754
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=9.1e-26 Score=219.56 Aligned_cols=182 Identities=14% Similarity=0.165 Sum_probs=145.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCc---------hhhHHHHHHH-HhhcCCCCchH
Q 036340 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD---------LHLGMQIHQM-VTKTVIPDVPI 366 (579)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~-~~~~~~~~~~~ 366 (579)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|...+. .+.|.++++. ...++.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 5677778888888888888888888888888888888888887765443 5667777776 77788888888
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhcc---CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcc
Q 036340 367 NNALITMYARCGAIVEARIIFEEMK---LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH 443 (579)
Q Consensus 367 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 443 (579)
|+.++.+|++.|++++|.++|++|. ..||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 8888888888888888888888875 5678888888888888888888888888888888888888888888888888
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhc
Q 036340 444 AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479 (579)
Q Consensus 444 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 479 (579)
.|++++|.+++++|.+. +..|+..||+.+...+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 88888888888888655 888888888877776654
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.5e-25 Score=218.70 Aligned_cols=273 Identities=8% Similarity=-0.064 Sum_probs=189.0
Q ss_pred hhhHHHHHHHHHh---cCCHHHHHHHHccCCC-----C------------ChhhHHHHHHHHHhCCCchHHHHHHHHHHH
Q 036340 264 TLTWNAMVSGYAQ---IGNLELALDFFKRMPQ-----K------------NLVSWNSMIAGCETNKDYEGAIKLFIQMQV 323 (579)
Q Consensus 264 ~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (579)
...+......+.. .|++++|..+|+++.+ . +...+..+...+...|++++|...|+++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444443 7778888877776543 1 234566777788888888888888888877
Q ss_pred cCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHH
Q 036340 324 EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNA 401 (579)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~ 401 (579)
.... ...+..+..++...|+++.|...++......+.+..++..++..+...|++++|...|++.. .+.+...+..
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 343 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHH
Confidence 6433 66677777777788888888888777555566677777778888888888888888877763 2334556777
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC----cchhHHHHHHh
Q 036340 402 MIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR----IEHFASLVDIV 477 (579)
Q Consensus 402 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~ 477 (579)
++..+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.....-.++ ...+..++.++
T Consensus 344 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 422 (514)
T 2gw1_A 344 LACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422 (514)
T ss_dssp HHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 7777777888888888888777532 223446777777777888888888888777654222222 22677777777
Q ss_pred hc---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhh
Q 036340 478 GR---HGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539 (579)
Q Consensus 478 ~~---~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 539 (579)
.. .|++++|...++++ ...| +...+..++.++...|++++|...+++++++.|+++..+..+
T Consensus 423 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred hhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 77 78888888777776 2223 566777777777788888888888888888887766554443
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=5.8e-25 Score=221.18 Aligned_cols=427 Identities=12% Similarity=0.055 Sum_probs=321.0
Q ss_pred chhhHHHHHHHHHhcCChhhHHHHHccCCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHH
Q 036340 90 NVVSWNAMISGFLQNGDVANAIEFFDRMPG---RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLI 166 (579)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 166 (579)
....+..+...+.+.|++++|++.|+++.. .++..+..++.++...|++++|++.++++.+ ..|.+..++..++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE---IKPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHH
Confidence 345778889999999999999999998754 4667888899999999999999999999988 4567788999999
Q ss_pred HHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh------hHHHHHH
Q 036340 167 VGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDT------FSWNTMI 240 (579)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~ 240 (579)
.++...|++++|...|+.+. ..|+. ....+..+...+....|...+++++..++ ......+
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~-----------~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 167 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLS-----------LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL 167 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC------------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-----------cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH
Confidence 99999999999999997442 12322 22334455666677889999998866421 1233455
Q ss_pred HHHHhcCChHHHHHHhhcCCCCChh---hHHHHHHHHHhc--------CCHHHHHHHHccCCC--CC--------hhhHH
Q 036340 241 SGYIHVLDMEEASNLFVKMPHPDTL---TWNAMVSGYAQI--------GNLELALDFFKRMPQ--KN--------LVSWN 299 (579)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~A~~~~~~~~~--~~--------~~~~~ 299 (579)
..+....+.+.+...+......+.. ....+...+... |++++|..+|+++.+ |+ ..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 247 (537)
T 3fp2_A 168 ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALC 247 (537)
T ss_dssp HHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHH
Confidence 6667778888888888777643332 334444333322 478899999988876 32 12466
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCC
Q 036340 300 SMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGA 379 (579)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 379 (579)
.+...+...|++++|...|+++.+.. |+...+..+...+...|+++.|...++......+.+..++..++..+...|+
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Confidence 67778889999999999999998864 5577888888899999999999999998666667788889999999999999
Q ss_pred HHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHh
Q 036340 380 IVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457 (579)
Q Consensus 380 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 457 (579)
+++|...|++.. .+.+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999998874 33456788889999999999999999999988642 233458888888999999999999999988
Q ss_pred HHhhCCCCCc----chhHHHHHHhhcc----------CChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHH
Q 036340 458 VNEYGIEPRI----EHFASLVDIVGRH----------GRLEDAMDLIKGM-PFE-PDKAVWGALLGACRVHNNVELAQVA 521 (579)
Q Consensus 458 ~~~~~~~~~~----~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 521 (579)
++.....++. ..+..++.++.+. |++++|...++++ ... .+...+..++.++...|++++|...
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 7653212211 1234445677777 9999999999887 333 3677888888999999999999999
Q ss_pred HHHHhhcCCCCCCC
Q 036340 522 AEALMKVEPENSTP 535 (579)
Q Consensus 522 ~~~~~~~~p~~~~~ 535 (579)
|++++++.|.++..
T Consensus 485 ~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 485 FEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHC--CHHH
T ss_pred HHHHHHhCCCcHHH
Confidence 99999999887653
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-24 Score=217.07 Aligned_cols=392 Identities=11% Similarity=-0.022 Sum_probs=310.9
Q ss_pred hhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhH
Q 036340 159 VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLE--R-DTFS 235 (579)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~ 235 (579)
...+...+..+.+.|++++|+..|+++. ...|+..++..++.++.+.|++++|...++++++ | +..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al----------~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 75 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWAL----------ELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHH----------HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH----------hcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHH
Confidence 4567888999999999999999999998 2347899999999999999999999999998864 3 5678
Q ss_pred HHHHHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHH-------------------------
Q 036340 236 WNTMISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGYAQIGNLELALDFF------------------------- 287 (579)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~------------------------- 287 (579)
+..++.++...|++++|...|+++. +++......++..+........+.+.+
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 9999999999999999999999886 333333333333333222222221111
Q ss_pred -------------ccCCC---------C-ChhhHHHHHHHHHh---CCCchHHHHHHHHHHH-----cCCCC--------
Q 036340 288 -------------KRMPQ---------K-NLVSWNSMIAGCET---NKDYEGAIKLFIQMQV-----EGEKP-------- 328 (579)
Q Consensus 288 -------------~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~~-------- 328 (579)
..... + +...+..+...+.. .|++++|...|+++.+ ....|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 11110 1 13344445555554 8999999999999987 32222
Q ss_pred ChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHH
Q 036340 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGC 406 (579)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 406 (579)
+..++..+...+...|+++.|...++......+. ...+..++..+...|++++|...++++. .+.+...+..++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence 2446667777889999999999999994444444 8889999999999999999999999875 234667889999999
Q ss_pred HhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHH
Q 036340 407 ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486 (579)
Q Consensus 407 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 486 (579)
...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..++.++...|++++|
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998753 234558888999999999999999999999864 233677888999999999999999
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHhh---cCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHH
Q 036340 487 MDLIKGM----PFEPD----KAVWGALLGACRV---HNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV 555 (579)
Q Consensus 487 ~~~~~~~----~~~~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 555 (579)
...++++ +..++ ...+..++..+.. .|++++|...++++++..|+++.++..++.+|...|++++|.+.
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999887 22222 4488899999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC
Q 036340 556 RLLMKSNNI 564 (579)
Q Consensus 556 ~~~~~~~~~ 564 (579)
++++.+...
T Consensus 472 ~~~a~~~~~ 480 (514)
T 2gw1_A 472 FEESADLAR 480 (514)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHhcc
Confidence 999987654
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.2e-24 Score=216.92 Aligned_cols=423 Identities=10% Similarity=-0.011 Sum_probs=275.6
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcch
Q 036340 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNI 202 (579)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 202 (579)
..+..+...+.+.|++++|++.|++++. ..|.+..++..++.++...|++++|++.++++.. .. +.+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~-p~~~ 93 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIE---LDPNEPVFYSNISACYISTGDLEKVIEFTTKALE--------IK-PDHS 93 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HC-TTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------cC-CchH
Confidence 4566677777888888888888888877 3456677788888888888888888888888762 11 3456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCC------ChhhHHHHHHHHHh
Q 036340 203 VSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHP------DTLTWNAMVSGYAQ 276 (579)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~ 276 (579)
.++..++.++...|++++|...|+ .+..++......+..+...+...+|...++.+... ........+..+..
T Consensus 94 ~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 94 KALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 777778888888888888888886 43333333333344455555566777777766511 11112233444556
Q ss_pred cCCHHHHHHHHccCCCCChh---hHHHHHHHHHhC--------CCchHHHHHHHHHHHcCCCCC------hhhHHHHHHh
Q 036340 277 IGNLELALDFFKRMPQKNLV---SWNSMIAGCETN--------KDYEGAIKLFIQMQVEGEKPD------RHTFSSILSM 339 (579)
Q Consensus 277 ~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 339 (579)
..+.+.+...+......+.. ....+...+... |++++|..+|+++.+...... ..++..+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH
Confidence 67777777777766654433 333333333222 467778888877765432210 2234555566
Q ss_pred ccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHH
Q 036340 340 SSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALE 417 (579)
Q Consensus 340 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 417 (579)
+...|+++.|...++......+ +...+..+...+...|++++|...|+++. .+.+..++..++..+...|++++|+.
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 6777888888888777333333 36777778888888888888888887764 23455667777788888888888888
Q ss_pred HHHHhHhCCCCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC---
Q 036340 418 LFKSMRSFKVLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM--- 493 (579)
Q Consensus 418 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 493 (579)
.++++.+. .|+ ...+..+...+...|++++|..+++++++. .+.+...+..++.++...|++++|...++++
T Consensus 332 ~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 332 DFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88887754 343 447777777888888888888888877654 1334567777788888888888888887775
Q ss_pred -CCC----CCHHHHHHHHHHHhhc----------CCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHH
Q 036340 494 -PFE----PDKAVWGALLGACRVH----------NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558 (579)
Q Consensus 494 -~~~----~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 558 (579)
+.. .....+.....++... |++++|+..++++++..|+++.++..++.+|...|++++|.+.+++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 111 1222234445556666 8888888888888888888877788888888888888888888887
Q ss_pred HHhCC
Q 036340 559 MKSNN 563 (579)
Q Consensus 559 ~~~~~ 563 (579)
+.+..
T Consensus 488 al~~~ 492 (537)
T 3fp2_A 488 SAILA 492 (537)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 76554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.5e-23 Score=205.89 Aligned_cols=342 Identities=11% Similarity=0.052 Sum_probs=198.0
Q ss_pred CCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---
Q 036340 155 GEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER--- 231 (579)
Q Consensus 155 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 231 (579)
.|.+...+..++..+.+.|++++|+.+|+++... .+.+..++..++.++...|++++|...|+++++.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 92 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDG---------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3445555666666666666666666666665411 1334555666666666666666666666655432
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHhhcCC--CC-Ch---hhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHH
Q 036340 232 DTFSWNTMISGYIHVLDMEEASNLFVKMP--HP-DT---LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305 (579)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 305 (579)
+..++..++.++...|++++|...|+++. .| +. ..+..++..+... .+..+...+
T Consensus 93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~ 153 (450)
T 2y4t_A 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNA 153 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHH
Confidence 23344444444444444444444444443 12 22 3333333332211 123334557
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHH
Q 036340 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARI 385 (579)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 385 (579)
...|++++|+..|+++.+... .+..+ +..++.+|...|++++|..
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~~-~~~~~----------------------------------~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVCV-WDAEL----------------------------------RELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHH----------------------------------HHHHHHHHHHTTCGGGGHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CChHH----------------------------------HHHHHHHHHHCCCHHHHHH
Confidence 778888888888888876432 13333 4445555555566666665
Q ss_pred HHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh-hHHHH------------HHHhcccCcHHHH
Q 036340 386 IFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI-TFISV------------LSACAHAGLVEEG 450 (579)
Q Consensus 386 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l------------~~~~~~~~~~~~a 450 (579)
.|+++. .+.+..+|..++..|...|++++|+..|+++.+ ..|+.. .+..+ +..+...|++++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 276 (450)
T 2y4t_A 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276 (450)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 555543 233455566666666666666666666666653 234333 23222 5667777777777
Q ss_pred HHHHHHhHHhhCCCCC-----cchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHH
Q 036340 451 RQHFKSMVNEYGIEPR-----IEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAE 523 (579)
Q Consensus 451 ~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 523 (579)
..+|++++.. .|+ ...+..++.++.+.|++++|+..++++ ...| +...|..++.+|...|++++|+..++
T Consensus 277 ~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 277 TSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp HHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777777653 333 335666777777777777777777775 3233 56777777777777778888888888
Q ss_pred HHhhcCCCCCCCchhhh------------hhhhhcC-----CchHHHHHHHH-HHhCCC
Q 036340 524 ALMKVEPENSTPYVLLY------------NMYADVG-----RWDDANEVRLL-MKSNNI 564 (579)
Q Consensus 524 ~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-~~~~~~ 564 (579)
+++++.|+++.++..++ ..|...| +.+++.+.+++ ..+..+
T Consensus 354 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 354 TAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 88777777777766666 4455455 45566766665 344433
No 11
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.92 E-value=2.2e-24 Score=209.79 Aligned_cols=198 Identities=13% Similarity=0.140 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHcCCCCCh-hhHHHHHHhccCCCchhhHHHHHHH-HhhcCCCCchHHHHHHHHhhhcCC---------HH
Q 036340 313 GAIKLFIQMQVEGEKPDR-HTFSSILSMSSGIVDLHLGMQIHQM-VTKTVIPDVPINNALITMYARCGA---------IV 381 (579)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 381 (579)
.+..+.+++.+.+..+.+ ..+..++.+|++.|+++.|.++|+. ...|+.||..+|+.++.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 445566777777766554 4588899999999999999999998 889999999999999999987664 68
Q ss_pred HHHHHHHhcc---CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhH
Q 036340 382 EARIIFEEMK---LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMV 458 (579)
Q Consensus 382 ~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 458 (579)
.|.++|++|. ..||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8999999996 7899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC---CCCCCHHHHHHHHHHHhh
Q 036340 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM---PFEPDKAVWGALLGACRV 511 (579)
Q Consensus 459 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~ 511 (579)
+. |+.||..+|+.|+.+|.+.|+.++|.+++++| +..|+..||+.++..+..
T Consensus 168 ~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 76 99999999999999999999999999999999 688999999999988764
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.8e-22 Score=196.76 Aligned_cols=356 Identities=11% Similarity=0.043 Sum_probs=225.8
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcc
Q 036340 122 SASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201 (579)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 201 (579)
...+..++..+.+.|++++|+..|+++.. ..|.+..++..++.++...|++++|...|+++.. .+ +.+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------~~-p~~ 93 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVD---GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ--------LK-MDF 93 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HC-TTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cC-CCc
Confidence 34566777778888888888888888776 3456677888888888888888888888888862 11 345
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh------hHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHH
Q 036340 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLERDT------FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYA 275 (579)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 275 (579)
..++..++.++.+.|++++|.+.|+++++.++ ..+..++..+.. ..+..++..+.
T Consensus 94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~ 154 (450)
T 2y4t_A 94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAF 154 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHH
Confidence 77788888888888888888888888866433 445555444322 12344566788
Q ss_pred hcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHH
Q 036340 276 QIGNLELALDFFKRMPQ---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQI 352 (579)
Q Consensus 276 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 352 (579)
..|++++|...|+++.+ .+...+..++.+|...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999999999998764 467789999999999999999999999998653 22445555555555555555555555
Q ss_pred HHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC--
Q 036340 353 HQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-- 430 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-- 430 (579)
++......+.+...+..+.... ....+..++..+...|++++|+..|+++.+. .|+
T Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 291 (450)
T 2y4t_A 234 VRECLKLDQDHKRCFAHYKQVK--------------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIA 291 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSH
T ss_pred HHHHHHhCCChHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcch
Confidence 5553322333333322220000 0000111255566666666666666666642 343
Q ss_pred ---hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 036340 431 ---YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGAL 505 (579)
Q Consensus 431 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 505 (579)
...+..+..++.+.|++++|...+++++.. .+.+...+..++.++...|++++|...++++ ...| +...+..+
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 369 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 224555556666666666666666666543 1224556666666666666666666666665 3444 34444444
Q ss_pred HH------------HHhhcC-----CHHHHHHHHHH-HhhcCCCCC
Q 036340 506 LG------------ACRVHN-----NVELAQVAAEA-LMKVEPENS 533 (579)
Q Consensus 506 ~~------------~~~~~~-----~~~~A~~~~~~-~~~~~p~~~ 533 (579)
.. .|...| +.+++.+.|++ +++..|++.
T Consensus 370 ~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 42 222233 56777888886 677777754
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=1.7e-18 Score=178.54 Aligned_cols=369 Identities=14% Similarity=0.156 Sum_probs=246.4
Q ss_pred hhhhhcCCCHHHHHHHhccCCC-C-----chhHHHHHHHHHHHcCCCCChHHHHHHHhhCCCCCcchHHHHHHHHHccCC
Q 036340 2 ISGYVKRREMAKARKLFDEMPQ-R-----DVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGE 75 (579)
Q Consensus 2 ~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 75 (579)
++.|...|.+.+|+++++++.- | +....+.++.+..+. +.++..+....++... ...+...+...|.
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIANIAISNEL 1064 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHHHHHHhCCC
Confidence 5678899999999999999873 2 345677777777776 3233444444333222 3447777788888
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCC
Q 036340 76 MEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGG 155 (579)
Q Consensus 76 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 155 (579)
+++|..+|++.. ....+.+.++ ...+++++|.++.++. .++.+|..++.++...|++++|++.|.++
T Consensus 1065 yEEAf~IYkKa~-~~~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA------- 1131 (1630)
T 1xi4_A 1065 FEEAFAIFRKFD-VNTSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------- 1131 (1630)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------
Confidence 888888888875 2222222222 2677888888888766 34667788888888888888888888663
Q ss_pred CCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH
Q 036340 156 EDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFS 235 (579)
Q Consensus 156 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 235 (579)
.+...|..++.++.+.|++++|.+.|...+. ..+++...+.++.+|.+.++++...... ..++...
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk----------~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad 1197 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARK----------KARESYVETELIFALAKTNRLAELEEFI---NGPNNAH 1197 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------hcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHH
Confidence 3455777888888888888888888877651 1233333345777888888777544332 3445566
Q ss_pred HHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHH
Q 036340 236 WNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAI 315 (579)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (579)
|..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++. .+..+|..+..+|...|++..|.
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHH
Confidence 777788888888888888888764 47777888888888888888888776 45567777777777777777776
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhc--CCHHHHHHHHHhcc-C
Q 036340 316 KLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARC--GAIVEARIIFEEMK-L 392 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~-~ 392 (579)
..... +..+...+..++..|...|.++.+..+++......+-....|+.+..+|++- ++..++.+.|..-. .
T Consensus 1271 ~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1271 MCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred HHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 65543 2334555666777777777777777777663333355555666666666553 34555555555432 1
Q ss_pred CC------CeeeHHHHHHHHHhcCChHHHH
Q 036340 393 LK------NVVSWNAMIGGCASHGFATEAL 416 (579)
Q Consensus 393 ~~------~~~~~~~l~~~~~~~~~~~~A~ 416 (579)
++ +...|..++..|.+.|+++.|.
T Consensus 1346 ~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1346 PKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred chHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 11 3445777777777777777776
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=4.9e-18 Score=175.12 Aligned_cols=386 Identities=11% Similarity=0.110 Sum_probs=300.7
Q ss_pred CCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCC
Q 036340 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK 199 (579)
Q Consensus 120 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 199 (579)
.++.-....+++|...|.+.+|+++++++.........+...-+.++.+..+. +..+..++.++.. .
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd------------~ 1049 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD------------N 1049 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh------------h
Confidence 35666677888999999999999999999854212224455566677666665 5566666666653 1
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 036340 200 RNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGN 279 (579)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 279 (579)
.+ ...++..+...|.+++|..+|++... .....+.+ +...+++++|.++.++. .++.+|..++.++...|+
T Consensus 1050 ~d---~~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1050 YD---APDIANIAISNELFEEAFAIFRKFDV-NTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred cc---HHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC
Confidence 11 34478889999999999999999742 12222222 23788999999999987 457789999999999999
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhc
Q 036340 280 LELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKT 359 (579)
Q Consensus 280 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 359 (579)
+++|++.|.+. .|...|..++.++.+.|++++|++.|....+.. +++...+.++.+|.+.++++....+.
T Consensus 1121 ~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI------ 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI------ 1190 (1630)
T ss_pred HHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH------
Confidence 99999999775 677888999999999999999999999887754 34334445888888888887544332
Q ss_pred CCCCchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 036340 360 VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLS 439 (579)
Q Consensus 360 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 439 (579)
..++...+..++..+...|++++|..+|.... .|..++.++.+.|++++|++.+++.. +..+|..+..
T Consensus 1191 ~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~------ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~ 1258 (1630)
T 1xi4_A 1191 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCF 1258 (1630)
T ss_pred hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh------HHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHH
Confidence 24455667789999999999999999999863 79999999999999999999999873 4578888889
Q ss_pred HhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh--cCCH
Q 036340 440 ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRV--HNNV 515 (579)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~--~~~~ 515 (579)
+|...|++..|..+... +..++..+..++..|.+.|.+++|+.+++.. +.++ ....|..+..++.+ -++.
T Consensus 1259 acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHH
Confidence 99999999999887653 3346677789999999999999999999876 5555 34466666666544 4677
Q ss_pred HHHHHHHHHHhhcCC-----CCCCCchhhhhhhhhcCCchHHHHH
Q 036340 516 ELAQVAAEALMKVEP-----ENSTPYVLLYNMYADVGRWDDANEV 555 (579)
Q Consensus 516 ~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 555 (579)
.++.+.|..-..+.| .+...|..++..|.+.|+|+.|...
T Consensus 1333 mEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1333 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 888888887777766 6777899999999999999999844
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.1e-20 Score=179.41 Aligned_cols=314 Identities=11% Similarity=0.063 Sum_probs=147.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHH
Q 036340 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLER---DTFSWNTMISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGY 274 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 274 (579)
++..+..++..+...|++++|...|+++++. ++.++..+...+...|++++|...++++. +.+...+..++.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3456667777777777777777777766442 34455555555555555555555555544 22334444444555
Q ss_pred HhcCCHHHHHHHHccCCCCCh------hhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhh
Q 036340 275 AQIGNLELALDFFKRMPQKNL------VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHL 348 (579)
Q Consensus 275 ~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 348 (579)
...|++++|...|+++.+.++ ..+..+...+. ...+......+...|+++.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHH
Confidence 555555555555544433111 11111100000 0000001122233333333
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCC
Q 036340 349 GMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426 (579)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 426 (579)
|...++......+.+..++..+...+...|++++|...+++.. .+.+...+..+...+...|++++|+..+++..+.
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~- 217 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL- 217 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 3333333222223333444445555555555555555555443 1223444555555555555555555555555532
Q ss_pred CCCChh-hHH------------HHHHHhcccCcHHHHHHHHHHhHHhhCCCCC-c----chhHHHHHHhhccCChHHHHH
Q 036340 427 VLPTYI-TFI------------SVLSACAHAGLVEEGRQHFKSMVNEYGIEPR-I----EHFASLVDIVGRHGRLEDAMD 488 (579)
Q Consensus 427 ~~p~~~-~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~A~~ 488 (579)
.|+.. .+. .+...+...|++++|...++++... .|+ . ..+..++.++...|++++|..
T Consensus 218 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 218 -DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 23221 111 1133455555555555555555543 122 1 123334555555555555555
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhh
Q 036340 489 LIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542 (579)
Q Consensus 489 ~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 542 (579)
.+++. ...| +...+..++.++...|++++|...|+++++++|+++.++..+..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 55554 2122 445555555555555555555555555555555555544444443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.9e-20 Score=176.44 Aligned_cols=304 Identities=11% Similarity=0.051 Sum_probs=237.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHH
Q 036340 233 TFSWNTMISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ---KNLVSWNSMIAGCE 306 (579)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 306 (579)
+..+..+...+...|++++|+..|+++. +.+..++..++.++...|++++|...|+++.+ .+...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 4567777888888888888888888876 45567788888888888888888888887764 35567788888888
Q ss_pred hCCCchHHHHHHHHHHHcCCCC---C-hhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHH
Q 036340 307 TNKDYEGAIKLFIQMQVEGEKP---D-RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVE 382 (579)
Q Consensus 307 ~~~~~~~a~~~~~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 382 (579)
..|++++|...|+++.+. .| + ...+..+.... . ...+..++..+...|++++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~---------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E---------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H---------------HHHHHHHHHHHHHTTCHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H---------------HHHHHHHHHHHHHccCHHH
Confidence 888888888888888764 33 1 11111111100 0 1123345778899999999
Q ss_pred HHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 036340 383 ARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460 (579)
Q Consensus 383 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 460 (579)
|...++++. .+.+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+.
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999874 34567788899999999999999999999999642 335568889999999999999999999999864
Q ss_pred hCCCCC-cchhH------------HHHHHhhccCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHhhcCCHHHHHHH
Q 036340 461 YGIEPR-IEHFA------------SLVDIVGRHGRLEDAMDLIKGM-PFEPD-K----AVWGALLGACRVHNNVELAQVA 521 (579)
Q Consensus 461 ~~~~~~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~ 521 (579)
.|+ ...+. .++..+.+.|++++|...++++ ...|+ . ..+..+..++...|++++|+..
T Consensus 218 ---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 218 ---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 343 33222 3367789999999999999987 33343 3 2345577889999999999999
Q ss_pred HHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 522 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
++++++..|+++.++..++.+|...|++++|.+.++++.+..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999987653
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=9.4e-19 Score=172.99 Aligned_cols=366 Identities=11% Similarity=0.025 Sum_probs=221.9
Q ss_pred CcchHHHHHHHHHh----CCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhh----CCCHHHHHHHHccccccCCCC
Q 036340 121 DSASLSALVSGLIQ----NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ----RGRVEEARKLFDKIPVNCDRG 192 (579)
Q Consensus 121 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 192 (579)
++.+...+...|.. .+++++|+..|+++.+. .+..++..+...|.. .+++++|.+.|++..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~------ 106 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA------ 106 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH------
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH------
Confidence 34444444444444 55566666666655542 123455555555555 556666666666554
Q ss_pred CCCccCCcchHHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHh----cCChHHHHHHhhcCC-CC
Q 036340 193 EGNVRFKRNIVSWNSMIMCYAK----AGDVVSAREIFEQMLER-DTFSWNTMISGYIH----VLDMEEASNLFVKMP-HP 262 (579)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~-~~ 262 (579)
.. .++..+..+...|.. .+++++|...|++..+. ++..+..+...|.. .+++++|+..|++.. ..
T Consensus 107 --~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~ 181 (490)
T 2xm6_A 107 --LK---GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG 181 (490)
T ss_dssp --HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred --HC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 11 134445555555555 55666666666555433 33344444444443 344444444444333 23
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHccCCC-CChhhHHHHHHHHHh----CCCchHHHHHHHHHHHcCCCCChhhH
Q 036340 263 DTLTWNAMVSGYAQ----IGNLELALDFFKRMPQ-KNLVSWNSMIAGCET----NKDYEGAIKLFIQMQVEGEKPDRHTF 333 (579)
Q Consensus 263 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 333 (579)
+...+..+...|.. .+++++|..+|++..+ .++..+..+...|.. .+++++|..+|++..+.|
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------- 253 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-------- 253 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--------
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--------
Confidence 33444444444444 4555555555544332 233344444444443 445555555555544332
Q ss_pred HHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhh----cCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhc
Q 036340 334 SSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYAR----CGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH 409 (579)
Q Consensus 334 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 409 (579)
++..+..+..+|.. .+++++|...|+......++..+..+...|...
T Consensus 254 -----------------------------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~ 304 (490)
T 2xm6_A 254 -----------------------------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKG 304 (490)
T ss_dssp -----------------------------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHC
T ss_pred -----------------------------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Confidence 22333445555555 678888888888765445566677777777776
Q ss_pred -----CChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccC---cHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhc--
Q 036340 410 -----GFATEALELFKSMRSFKVLPTYITFISVLSACAHAG---LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR-- 479 (579)
Q Consensus 410 -----~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 479 (579)
+++++|+.+|++..+.| +...+..+...|...| ++++|.++|++..+. .++..+..++.+|..
T Consensus 305 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 305 AEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGK 377 (490)
T ss_dssp BTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTS
T ss_pred CCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCC
Confidence 88999999999888764 3456666666666545 788999999888753 356777788888887
Q ss_pred --cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhhcCCC---CCCCchhhhhhhhhc
Q 036340 480 --HGRLEDAMDLIKGMPFEPDKAVWGALLGACRV----HNNVELAQVAAEALMKVEPE---NSTPYVLLYNMYADV 546 (579)
Q Consensus 480 --~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 546 (579)
.+++++|...+++.-...++..+..+...+.. .++.++|...|+++.+..|+ ++.+...++.++...
T Consensus 378 g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH
Confidence 78999999999887333467788888888877 78999999999999988844 677777777766643
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.2e-19 Score=168.11 Aligned_cols=286 Identities=8% Similarity=-0.032 Sum_probs=203.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036340 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338 (579)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 338 (579)
.+...+..++..+...|++++|..+|+++.+ .+...+..++.++...|++++|..+++++.+... .+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHH
Confidence 3444455555555566666666666665543 2333455555566666666666666666655422 23444555555
Q ss_pred hccCCC-chhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHH
Q 036340 339 MSSGIV-DLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEA 415 (579)
Q Consensus 339 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 415 (579)
.+...| +++.|...++......+.+...+..++..+...|++++|...|++.. .+.+...+..+...+...|++++|
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 555666 66666666666444445566777888888889999999999988874 234456777788889999999999
Q ss_pred HHHHHHhHhCCCCC-ChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCC-------CCCcchhHHHHHHhhccCChHHHH
Q 036340 416 LELFKSMRSFKVLP-TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI-------EPRIEHFASLVDIVGRHGRLEDAM 487 (579)
Q Consensus 416 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~ 487 (579)
+..++++.+. .| +...+..+...+...|++++|...++++++...- +.....+..++.++...|++++|.
T Consensus 179 ~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 179 ERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999998854 44 4458888888899999999999999888764311 234567888899999999999999
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhh-hhcCCch
Q 036340 488 DLIKGM-PF-EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY-ADVGRWD 550 (579)
Q Consensus 488 ~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 550 (579)
..++++ .. +.+...+..++.++...|++++|...++++++..|+++.++..++.++ ...|+.+
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 998887 22 336778888889999999999999999999999999988888888888 5556543
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=1.2e-18 Score=161.22 Aligned_cols=276 Identities=13% Similarity=0.167 Sum_probs=138.8
Q ss_pred cCCCHHHHHHHhccCCCCchhHHHHHHHHHHHcCCCCChHHHHHHHhhCCCCCcchHHHHHHHHHccCCHHHHHHHhhcC
Q 036340 7 KRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSM 86 (579)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 86 (579)
+.|++++|.+.++++..| ..|..++.++...++ +++|++.|.+. +|+.+|..++..+...|++++|+..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~---~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGM---VKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCC---HHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 567899999999999554 589999999999988 99999999764 67779999999999999999999988877
Q ss_pred C--CCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHH
Q 036340 87 P--ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT 164 (579)
Q Consensus 87 ~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 164 (579)
. .+++.+.+.++.+|.+.|++.++.++++. |+..+|..++..|...|++++|...|..+ ..|..
T Consensus 88 rk~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----------~n~~~ 153 (449)
T 1b89_A 88 RKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGR 153 (449)
T ss_dssp ---------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----------TCHHH
T ss_pred HHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----------hhHHH
Confidence 6 35567888999999999999999988864 67779999999999999999999999985 26999
Q ss_pred HHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 036340 165 LIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYI 244 (579)
Q Consensus 165 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 244 (579)
++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+. ..+.....++..|.
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA~--------------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKAN--------------STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQ 218 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHT--------------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHcC--------------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHH
Confidence 9999999999999999999873 67899999999999999999987777654 56666667889999
Q ss_pred hcCChHHHHHHhhcCCC---CChhhHHHHHHHHHh--cCCHHHHHHHHccCCC--------CChhhHHHHHHHHHhCCCc
Q 036340 245 HVLDMEEASNLFVKMPH---PDTLTWNAMVSGYAQ--IGNLELALDFFKRMPQ--------KNLVSWNSMIAGCETNKDY 311 (579)
Q Consensus 245 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~ 311 (579)
+.|.+++|+.+++.... .....|+-|.-+|++ .+++.+.++.|..-.. .+...|..+...|...+++
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 99999999999999883 334566666666654 5677788888876654 3567899999999999999
Q ss_pred hHHHHHH
Q 036340 312 EGAIKLF 318 (579)
Q Consensus 312 ~~a~~~~ 318 (579)
+.|....
T Consensus 299 d~A~~tm 305 (449)
T 1b89_A 299 DNAIITM 305 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988743
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=5.1e-18 Score=167.72 Aligned_cols=356 Identities=11% Similarity=0.070 Sum_probs=209.4
Q ss_pred HHHHhhCC-CCCcchHHHHHHHHHc----cCCHHHHHHHhhcCC-CCchhhHHHHHHHHHh----cCChhhHHHHHccCC
Q 036340 49 RYLFDIMP-ERDCVTWNTVISGYAK----TGEMEEALRLFNSMP-ARNVVSWNAMISGFLQ----NGDVANAIEFFDRMP 118 (579)
Q Consensus 49 ~~~~~~~~-~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~ 118 (579)
...+++.. ..++..+..+...|.. .+++++|+..|++.. ..++.++..|...|.. .+++++|.+.|++..
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 106 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA 106 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 33444333 4566677777777766 677777777777665 3455666777777777 777777777777654
Q ss_pred C-CCcchHHHHHHHHHh----CCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhh----CCCHHHHHHHHccccccC
Q 036340 119 G-RDSASLSALVSGLIQ----NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQ----RGRVEEARKLFDKIPVNC 189 (579)
Q Consensus 119 ~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 189 (579)
+ .++..+..+...|.. .+++++|+..|+++... .+..++..+...|.. .+++++|.+.|++..
T Consensus 107 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~--- 178 (490)
T 2xm6_A 107 LKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA--- 178 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH---
T ss_pred HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH---
Confidence 3 345566666666666 66777777777777653 234566667776665 667777777777765
Q ss_pred CCCCCCccCCcchHHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHh----cCChHHHHHHhhcCC
Q 036340 190 DRGEGNVRFKRNIVSWNSMIMCYAK----AGDVVSAREIFEQMLER-DTFSWNTMISGYIH----VLDMEEASNLFVKMP 260 (579)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 260 (579)
+. .+...+..+...|.. .+++++|.+.|++..+. ++.++..+...|.. .+++++|...|++..
T Consensus 179 -----~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 179 -----EQ---GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp -----HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred -----HC---CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 22 245666667777766 67777777777766543 45555556666554 566666666666654
Q ss_pred -CCChhhHHHHHHHHHh----cCCHHHHHHHHccCCC-CChhhHHHHHHHHHhC-----CCchHHHHHHHHHHHcCCCCC
Q 036340 261 -HPDTLTWNAMVSGYAQ----IGNLELALDFFKRMPQ-KNLVSWNSMIAGCETN-----KDYEGAIKLFIQMQVEGEKPD 329 (579)
Q Consensus 261 -~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~ 329 (579)
..+...+..+...|.. .++.++|..+|++..+ .++..+..+...|... +++++|+..|++..+.| +
T Consensus 251 ~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~ 327 (490)
T 2xm6_A 251 EQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---D 327 (490)
T ss_dssp TTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---C
T ss_pred HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---C
Confidence 3344555555555555 5666666666666543 3444555566666555 66666666666665543 2
Q ss_pred hhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcC---CHHHHHHHHHhccCCCCeeeHHHHHHHH
Q 036340 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCG---AIVEARIIFEEMKLLKNVVSWNAMIGGC 406 (579)
Q Consensus 330 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 406 (579)
...+ ..+...|...| ++++|.++|++.....++..+..+...|
T Consensus 328 ~~a~----------------------------------~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y 373 (490)
T 2xm6_A 328 ATAQ----------------------------------ANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNAL 373 (490)
T ss_dssp HHHH----------------------------------HHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH----------------------------------HHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2233 33333343323 4455555555443233444555555555
Q ss_pred Hh----cCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcc----cCcHHHHHHHHHHhHHh
Q 036340 407 AS----HGFATEALELFKSMRSFKVLPTYITFISVLSACAH----AGLVEEGRQHFKSMVNE 460 (579)
Q Consensus 407 ~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 460 (579)
.. .+++++|+.+|++..+.+ +...+..+...|.. .+++++|...|++....
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 55 455555555555555433 23344444444444 45555555555555443
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=9.4e-19 Score=172.70 Aligned_cols=391 Identities=12% Similarity=-0.005 Sum_probs=208.0
Q ss_pred HHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCC
Q 036340 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD 217 (579)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 217 (579)
+....+.+....+.. ..+.....|+.++..+...|++++|++.|++.....+.......-+....+|+.+..+|...|+
T Consensus 31 l~~~e~~~~~~~~~~-~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~ 109 (472)
T 4g1t_A 31 LDDFEDKVFYRTEFQ-NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR 109 (472)
T ss_dssp HHHHHHHHHHHTTSC-C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC
Confidence 344444443333321 3334456799999999999999999999988752211100111123346788999999999999
Q ss_pred HHHHHHHHHhcCCC-----------ChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 036340 218 VVSAREIFEQMLER-----------DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDF 286 (579)
Q Consensus 218 ~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 286 (579)
+++|...+++.++- ...++.....++...| .+++++|+..
T Consensus 110 ~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------------------------~~~y~~A~~~ 160 (472)
T 4g1t_A 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCG-----------------------------GNQNERAKVC 160 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHC-----------------------------TTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHc-----------------------------cccHHHHHHH
Confidence 99999988876321 1223333333332221 2234444444
Q ss_pred HccCCC--C-ChhhHHHHHHH---HHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHH----hccCCCchhhHHHHHHHH
Q 036340 287 FKRMPQ--K-NLVSWNSMIAG---CETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS----MSSGIVDLHLGMQIHQMV 356 (579)
Q Consensus 287 ~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~ 356 (579)
|++..+ | ++..+..+..+ +...++.++|++.+++..+.... +..++..+.. .....++.+.|...++..
T Consensus 161 ~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a 239 (472)
T 4g1t_A 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEA 239 (472)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444432 2 22222222222 22334455555555555443211 2222222221 122334455555555554
Q ss_pred hhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCC-CeeeHHHHHHHHHh-------------------cCChHHH
Q 036340 357 TKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLK-NVVSWNAMIGGCAS-------------------HGFATEA 415 (579)
Q Consensus 357 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~-------------------~~~~~~A 415 (579)
....+.+..++..++..|...|++++|...+++.. ..| +..++..+..+|.. .+..+.|
T Consensus 240 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A 319 (472)
T 4g1t_A 240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319 (472)
T ss_dssp HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHH
T ss_pred HHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Confidence 44444555555556666666666666666665543 222 23334444443321 2235678
Q ss_pred HHHHHHhHhCCCCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcc----hhHHHHHH-hhccCChHHHHHH
Q 036340 416 LELFKSMRSFKVLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIE----HFASLVDI-VGRHGRLEDAMDL 489 (579)
Q Consensus 416 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~-~~~~g~~~~A~~~ 489 (579)
+..+++..+. .|+ ..++..+...+...|++++|+..|++++.. .|+.. .+..++.. +...|++++|+..
T Consensus 320 ~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 320 VAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888887753 444 347888888899999999999999988753 33321 23333332 3467899999998
Q ss_pred HHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCCCC
Q 036340 490 IKGM-PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPT 568 (579)
Q Consensus 490 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 568 (579)
+++. ...|+...... ....+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+...+.
T Consensus 395 y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 395 FIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 8876 45565433222 2345567788888999999999999999999999999999999999988876666
Q ss_pred cceee
Q 036340 569 GYSWV 573 (579)
Q Consensus 569 ~~~~~ 573 (579)
..+|+
T Consensus 466 a~~~~ 470 (472)
T 4g1t_A 466 ASSWN 470 (472)
T ss_dssp -----
T ss_pred HhhcC
Confidence 66664
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=6.7e-18 Score=168.65 Aligned_cols=406 Identities=14% Similarity=0.100 Sum_probs=265.5
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCc
Q 036340 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200 (579)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 200 (579)
+...|..++. +.+.|++++|..+|+++++ ..|.+...|...+..+.+.|++++|..+|+++. ...|
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~---~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral----------~~~p 77 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVA---QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCL----------MKVL 77 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT----------TTCC
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------hcCC
Confidence 5567777777 4778889999999998888 567777888888888888889999999998887 2246
Q ss_pred chHHHHHHHHHH-HhcCCHHHHHH----HHHhcCC------CChhHHHHHHHHHHh---------cCChHHHHHHhhcCC
Q 036340 201 NIVSWNSMIMCY-AKAGDVVSARE----IFEQMLE------RDTFSWNTMISGYIH---------VLDMEEASNLFVKMP 260 (579)
Q Consensus 201 ~~~~~~~l~~~~-~~~~~~~~A~~----~~~~~~~------~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 260 (579)
+...|..++... ...|+.+.|.+ +|+..++ .+...|...+..... .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 777777777533 34566665544 5555422 234556665555443 466666777766665
Q ss_pred -CCCh---hhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHH------HHcC---CC
Q 036340 261 -HPDT---LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQM------QVEG---EK 327 (579)
Q Consensus 261 -~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~---~~ 327 (579)
.|.. ..|..........|. ..+..++. ...+++..|..++.+. .+.. +.
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 2221 122221111100010 00111110 1223455565555542 1111 12
Q ss_pred CCh--------hhHHHHHHhcc----CCCch----hhHHHHHHHHhhcCCCCchHHHHHHHHhhh-------cCCHH---
Q 036340 328 PDR--------HTFSSILSMSS----GIVDL----HLGMQIHQMVTKTVIPDVPINNALITMYAR-------CGAIV--- 381 (579)
Q Consensus 328 ~~~--------~~~~~l~~~~~----~~~~~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~--- 381 (579)
|+. ..|...+.... ..++. ..+...++......|.++.+|..++..+.+ .|+++
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 321 22333222111 11222 255567777555567778888888888775 68876
Q ss_pred ----HHHHHHHhcc--CCC-CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh--hhHHHHHHHhcccCcHHHHHH
Q 036340 382 ----EARIIFEEMK--LLK-NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY--ITFISVLSACAHAGLVEEGRQ 452 (579)
Q Consensus 382 ----~A~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~ 452 (579)
+|..+|++.. ..| +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|..
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 8899998865 234 466788888888999999999999999986 45653 378888888888999999999
Q ss_pred HHHHhHHhhCCCCC-cchhHHHHHH-hhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhc
Q 036340 453 HFKSMVNEYGIEPR-IEHFASLVDI-VGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKV 528 (579)
Q Consensus 453 ~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 528 (579)
+|++.++. .|. ...+...+.. +...|+.++|..+|++. ...| ++..|..++..+.+.|+.++|..+|++++..
T Consensus 378 ~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 378 IFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 99988743 342 3333332222 33689999999999876 3334 6788888888888999999999999999988
Q ss_pred CCCCCC----CchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 529 EPENST----PYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 529 ~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
.|.++. .|...+......|+.+.+..+.+++.+.-
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 877665 56677777888899999999988876544
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1e-18 Score=163.60 Aligned_cols=267 Identities=11% Similarity=0.029 Sum_probs=229.7
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHH
Q 036340 293 KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALIT 372 (579)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 372 (579)
.++..+..++..+...|++++|..+|+++.+... .+...+..++.++...|+++.|..+++......+.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 5667788889999999999999999999987643 345566667788889999999999999966677788899999999
Q ss_pred HhhhcC-CHHHHHHHHHhcc-C-CCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHH
Q 036340 373 MYARCG-AIVEARIIFEEMK-L-LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEE 449 (579)
Q Consensus 373 ~~~~~~-~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 449 (579)
.+...| ++++|...|++.. . +.+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 999999 9999999999875 2 3356779999999999999999999999998653 2234577778889999999999
Q ss_pred HHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCC-----------CCCCHHHHHHHHHHHhhcCCHHHH
Q 036340 450 GRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMP-----------FEPDKAVWGALLGACRVHNNVELA 518 (579)
Q Consensus 450 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A 518 (579)
|...++++++. .+.+...+..++.++...|++++|...++++- .+.....+..++.++...|++++|
T Consensus 178 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999753 23357888999999999999999999998761 133467899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 519 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
+..++++++..|+++.++..++.++...|++++|.+.++++.+..
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999977554
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=2.9e-19 Score=170.21 Aligned_cols=257 Identities=11% Similarity=0.010 Sum_probs=185.0
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhh
Q 036340 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYAR 376 (579)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (579)
.+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|+++.|...++......+.+..++..++.++..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34455555555555555555555555432 12334444455555555555555555555333344455666667777777
Q ss_pred cCCHHHHHHHHHhcc-CCCC-eeeHHH---------------HHHHHHhcCChHHHHHHHHHhHhCCCCCC---hhhHHH
Q 036340 377 CGAIVEARIIFEEMK-LLKN-VVSWNA---------------MIGGCASHGFATEALELFKSMRSFKVLPT---YITFIS 436 (579)
Q Consensus 377 ~~~~~~A~~~~~~~~-~~~~-~~~~~~---------------l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~ 436 (579)
.|++++|...++++. ..|+ ...+.. .+..+...|++++|+..++++.+. .|+ ..++..
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~ 222 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCG 222 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHHHH
Confidence 777777777777653 2221 111110 233334889999999999999864 444 568888
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC
Q 036340 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNN 514 (579)
Q Consensus 437 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 514 (579)
+...+...|++++|...+++++.. .+.+...+..++.++...|++++|...++++ ...| +...+..++.++...|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999999864 2335778899999999999999999999987 3334 67889999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC-----------CCCchhhhhhhhhcCCchHHHHHHHH
Q 036340 515 VELAQVAAEALMKVEPEN-----------STPYVLLYNMYADVGRWDDANEVRLL 558 (579)
Q Consensus 515 ~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 558 (579)
+++|...++++++..|++ ..+|..++.+|...|++++|..++++
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 999999999999998887 67799999999999999999998764
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=3.3e-18 Score=158.24 Aligned_cols=222 Identities=15% Similarity=0.173 Sum_probs=82.8
Q ss_pred ccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 036340 72 KTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSR 151 (579)
Q Consensus 72 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 151 (579)
+.|++++|.++++++.. +.+|..|+.++.+.|++++|++.|.+. +|...|..++..+...|++++|+..++.+++.
T Consensus 15 ~~~~ld~A~~fae~~~~--~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 55777888888887743 347778888888888888888887653 56667777777777888888888877766653
Q ss_pred CCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 036340 152 CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER 231 (579)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 231 (579)
.+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 91 ----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 91 ----ARESYVETELIFALAKTNRLAELEEFIN---------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ----------------------CHHHHTTTTT---------------CC----------------CTTTHHHHHHHT---
T ss_pred ----CccchhHHHHHHHHHHhCCHHHHHHHHc---------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 2335567778888888888888776653 245557888888888888888888888876
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCc
Q 036340 232 DTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDY 311 (579)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (579)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 46777888888888888888888877 377788888888888888888877766654 4444455677778888888
Q ss_pred hHHHHHHHHHHHc
Q 036340 312 EGAIKLFIQMQVE 324 (579)
Q Consensus 312 ~~a~~~~~~~~~~ 324 (579)
++|+.+++.....
T Consensus 224 eEai~lLe~aL~l 236 (449)
T 1b89_A 224 EELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCC
Confidence 8888888777643
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=1.7e-16 Score=158.46 Aligned_cols=410 Identities=10% Similarity=0.104 Sum_probs=285.1
Q ss_pred CCchhhHHHHHHHHHhcCChhhHHHHHccCCCC---CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHH
Q 036340 88 ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR---DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT 164 (579)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 164 (579)
+.+..+|..++.. .+.|++++|..+|+++... +...|..++..+.+.|++++|..+|++++.. .| +...|..
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p-~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VL-HIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CC-CHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC-ChHHHHH
Confidence 3467789999984 7899999999999998763 4557888999999999999999999999985 33 5667777
Q ss_pred HHHHH-hhCCCHHHHHH----HHccccccCCCCCCCccCCc-chHHHHHHHHHHHh---------cCCHHHHHHHHHhcC
Q 036340 165 LIVGY-GQRGRVEEARK----LFDKIPVNCDRGEGNVRFKR-NIVSWNSMIMCYAK---------AGDVVSAREIFEQML 229 (579)
Q Consensus 165 l~~~~-~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~ 229 (579)
.+... ...|+.++|.+ +|+.+.. ..|..| +...|...+....+ .|+++.|..+|++.+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~-------~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALD-------KIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHH-------HTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHH-------HCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 76533 45677776665 7777751 234443 56778888877665 789999999999987
Q ss_pred CC-Ch---hHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHc----------cCC---C
Q 036340 230 ER-DT---FSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK----------RMP---Q 292 (579)
Q Consensus 230 ~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----------~~~---~ 292 (579)
+. .. ..|..........|. ..+..++. .+.++++.|..++. ... .
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 62 21 223222221111111 11111111 11233444443333 211 1
Q ss_pred CC--------hhhHHHHHHHHHhC----CCc----hHHHHHHHHHHHcCCCCChhhHHHHHHhccC-------CCchh--
Q 036340 293 KN--------LVSWNSMIAGCETN----KDY----EGAIKLFIQMQVEGEKPDRHTFSSILSMSSG-------IVDLH-- 347 (579)
Q Consensus 293 ~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-- 347 (579)
|+ ...|...+...... ++. .++..+|++.+... +.+...|......+.. .|+.+
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 11 13444444333222 233 36778888887753 2355666666666553 68876
Q ss_pred -----hHHHHHHHHhh-cCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCCe--eeHHHHHHHHHhcCChHHHHHH
Q 036340 348 -----LGMQIHQMVTK-TVIPDVPINNALITMYARCGAIVEARIIFEEMK-LLKNV--VSWNAMIGGCASHGFATEALEL 418 (579)
Q Consensus 348 -----~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~A~~~ 418 (579)
.|..+++.... ..|.+..++..++..+.+.|++++|..+|+++. ..|+. ..|..++..+.+.|+.++|..+
T Consensus 299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888554 456678899999999999999999999999875 45543 4788889989999999999999
Q ss_pred HHHhHhCCCCCC-hhhHHHHHHH-hcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC---
Q 036340 419 FKSMRSFKVLPT-YITFISVLSA-CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM--- 493 (579)
Q Consensus 419 ~~~~~~~~~~p~-~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 493 (579)
|++..+. .|+ ...+...+.. +...|++++|..+|+..++.. +.++..+..++..+.+.|+.++|..+|++.
T Consensus 379 ~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 379 FKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 9999864 443 2333332222 336899999999999998753 235788899999999999999999999987
Q ss_pred -CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC
Q 036340 494 -PFEPD--KAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 494 -~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 532 (579)
+..|+ ...|...+......|+.+.+..+++++.+..|++
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 22332 3478888888888999999999999999988853
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=3.2e-17 Score=149.07 Aligned_cols=271 Identities=10% Similarity=-0.012 Sum_probs=201.5
Q ss_pred HHHhcCChHHHHHHhhcCCC--CCh--hhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHH
Q 036340 242 GYIHVLDMEEASNLFVKMPH--PDT--LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL 317 (579)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (579)
-....|++..|+..++.... |+. .....+.++|...|+++.|+..++....++..++..+...+...++.++|++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 34455666666666655542 221 24455677888888888888877765445556777777788888888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCee
Q 036340 318 FIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVV 397 (579)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 397 (579)
++++...+..|+... .+..+...+...|++++|.+.+++ +.+..
T Consensus 88 l~~ll~~~~~P~~~~---------------------------------~~~~la~~~~~~g~~~~Al~~l~~---~~~~~ 131 (291)
T 3mkr_A 88 LDREMSRSVDVTNTT---------------------------------FLLMAASIYFYDQNPDAALRTLHQ---GDSLE 131 (291)
T ss_dssp HHHHHHSCCCCSCHH---------------------------------HHHHHHHHHHHTTCHHHHHHHHTT---CCSHH
T ss_pred HHHHHhcccCCCCHH---------------------------------HHHHHHHHHHHCCCHHHHHHHHhC---CCCHH
Confidence 888877655555433 335567788899999999999988 46677
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhH---HHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 036340 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITF---ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474 (579)
Q Consensus 398 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 474 (579)
.+..++..+.+.|++++|++.++++.+. .|+.... ..++..+...|++++|..+|+++++. .+.++..++.++
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la 207 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQA 207 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 8888999999999999999999999865 4654321 12233444569999999999999875 345778889999
Q ss_pred HHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHH-HHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchH
Q 036340 475 DIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVEL-AQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551 (579)
Q Consensus 475 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 551 (579)
.++.+.|++++|...++++ ...| ++.++..++..+...|+.++ +..+++++++.+|+++.+ .....+.+.+++
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~ 283 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDR 283 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHH
Confidence 9999999999999999987 4445 77889999989888998865 678999999999998753 344556666666
Q ss_pred HHHHH
Q 036340 552 ANEVR 556 (579)
Q Consensus 552 A~~~~ 556 (579)
+..-|
T Consensus 284 ~~~~~ 288 (291)
T 3mkr_A 284 LVLQY 288 (291)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 65543
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=8.9e-18 Score=165.68 Aligned_cols=389 Identities=11% Similarity=-0.039 Sum_probs=228.1
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHhccC------CCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCc
Q 036340 123 ASLSALVSGLIQNGELDEAARVLVKCGSR------CDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196 (579)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 196 (579)
..|+.+...+...|++++|++.|+++++. ....+....+|..++.+|...|++++|...++++....+...+.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~- 130 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP- 130 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc-
Confidence 34555666666666666666666655431 01234456678999999999999999999988775321111000
Q ss_pred cCCcchHHHHHHHHHHHhc--CCHHHHHHHHHhcCC--C-ChhHHHHHHHH---HHhcCChHHHHHHhhcCC---CCChh
Q 036340 197 RFKRNIVSWNSMIMCYAKA--GDVVSAREIFEQMLE--R-DTFSWNTMISG---YIHVLDMEEASNLFVKMP---HPDTL 265 (579)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~---~~~~~ 265 (579)
.-.....++..+..++... +++++|...|++.++ | ++..+..+..+ +...++.++|+..+++.. +.+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 1112355666666666554 579999999999865 3 44555555544 345677888888888776 44556
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHccCCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036340 266 TWNAMVSGYAQ----IGNLELALDFFKRMPQ---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILS 338 (579)
Q Consensus 266 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 338 (579)
++..+...+.. .|++++|.+.+++... .+...+..+...|...|++++|+..+++..+.... +..++..+..
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 289 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHH
Confidence 66666555544 4678889999887653 45667888999999999999999999998875322 3344444433
Q ss_pred hccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHH
Q 036340 339 MSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEAL 416 (579)
Q Consensus 339 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 416 (579)
++...+....+. .. ..........+.++.|...++... .+.+...+..+...+...|++++|+
T Consensus 290 ~y~~~~~~~~~~---------~~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 290 CYRAKVFQVMNL---------RE------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhhhH---------HH------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHH
Confidence 332111100000 00 000111111234567777777654 3556778999999999999999999
Q ss_pred HHHHHhHhCCCCCChh--hHHHHHH-HhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC
Q 036340 417 ELFKSMRSFKVLPTYI--TFISVLS-ACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 417 ~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 493 (579)
..|++..+....|... .+..+.. .....|++++|+..|++.++ +.|+....... ...+..++++.
T Consensus 355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~ 422 (472)
T 4g1t_A 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAKMR 422 (472)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHHHH
Confidence 9999998754333222 2333332 34578999999999998874 45654322222 22233344333
Q ss_pred -C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhh
Q 036340 494 -P-FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540 (579)
Q Consensus 494 -~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 540 (579)
. .+.++.+|..++.++...|++++|++.|+++++..|.+|.+...+|
T Consensus 423 l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2 2347789999999999999999999999999999999988777665
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=4.9e-18 Score=161.34 Aligned_cols=258 Identities=9% Similarity=-0.063 Sum_probs=175.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhc
Q 036340 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARC 377 (579)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (579)
+..+...+.+.|++++|+..|+++.+... .+..++..+..++...|+++.|...++......+.+..++..++.+|...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 33344444444444444444444433221 12333334444444444444444444442223344455667778888888
Q ss_pred CCHHHHHHHHHhcc-CCCC-----------eeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCC-CChhhHHHHHHHhccc
Q 036340 378 GAIVEARIIFEEMK-LLKN-----------VVSWNAMIGGCASHGFATEALELFKSMRSFKVL-PTYITFISVLSACAHA 444 (579)
Q Consensus 378 ~~~~~A~~~~~~~~-~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~ 444 (579)
|++++|...|+++. ..|+ ...+..+...+...|++++|+..++++.+.... ++..++..+...+...
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 88888888887764 1221 223345578889999999999999999875321 1466888999999999
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHH
Q 036340 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAA 522 (579)
Q Consensus 445 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 522 (579)
|++++|...++++++. .+.+..++..++.++...|++++|+..++++ ...| +...+..++.++...|++++|+..|
T Consensus 227 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999864 2336788999999999999999999999987 3344 5888999999999999999999999
Q ss_pred HHHhhcCCC------------CCCCchhhhhhhhhcCCchHHHHHHHH
Q 036340 523 EALMKVEPE------------NSTPYVLLYNMYADVGRWDDANEVRLL 558 (579)
Q Consensus 523 ~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 558 (579)
++++++.|+ +..+|..++.++...|+.+.|....++
T Consensus 305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999998877 356688999999999999998887765
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=6.2e-18 Score=160.92 Aligned_cols=277 Identities=15% Similarity=0.081 Sum_probs=204.4
Q ss_pred CCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHH-HHHHHHHcCC-CC--ChhhHHHHHHhccCCCchhhHHHHH
Q 036340 278 GNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIK-LFIQMQVEGE-KP--DRHTFSSILSMSSGIVDLHLGMQIH 353 (579)
Q Consensus 278 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 353 (579)
+.++.+...|+.+...+.. ++...|++++|+. .|++...... .| +...+..+...+...|+++.|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444555555555443322 2344578888888 8776554321 12 3566778888999999999999999
Q ss_pred HHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh
Q 036340 354 QMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY 431 (579)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 431 (579)
+......+.+..++..++.++...|++++|...|+++. .+.+..++..++..+...|++++|+..++++.... |+.
T Consensus 88 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 165 (368)
T 1fch_A 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAY 165 (368)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCc
Confidence 99767778888999999999999999999999999874 34467789999999999999999999999999753 433
Q ss_pred h-hHHH---------------HHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-C
Q 036340 432 I-TFIS---------------VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-P 494 (579)
Q Consensus 432 ~-~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 494 (579)
. .+.. .+..+...|++++|...++++++.....++..++..++.++...|++++|...++++ .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 2221 133333899999999999999875322224778899999999999999999999987 3
Q ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 495 FEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 495 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
..| +...+..++..+...|++++|+..++++++..|+++.++..++.+|...|++++|...++++.+..
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 334 678999999999999999999999999999999999999999999999999999999999987644
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=7.9e-18 Score=157.29 Aligned_cols=258 Identities=9% Similarity=-0.072 Sum_probs=179.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhc
Q 036340 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARC 377 (579)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (579)
+..+...+...|++++|..+|+++.+... .+...+..+..++...|+++.|...++......+.+...+..++..+...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 33444444444444444444444444321 13333444444444445555555444443333344555566677777777
Q ss_pred CCHHHHHHHHHhcc-CCC-CeeeHHHH--------------HH-HHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHH
Q 036340 378 GAIVEARIIFEEMK-LLK-NVVSWNAM--------------IG-GCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440 (579)
Q Consensus 378 ~~~~~A~~~~~~~~-~~~-~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 440 (579)
|++++|...++++. ..| +...+..+ .. .+...|++++|+..++++.+.. +.+...+..+...
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 181 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVL 181 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 77777777777653 222 22223222 22 3677888999999999998643 3355688888899
Q ss_pred hcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHH
Q 036340 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFE-PDKAVWGALLGACRVHNNVELA 518 (579)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A 518 (579)
+...|++++|...++++++. .+.+...+..++.++...|++++|...++++ ... .+...+..++.++...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999998764 2335678889999999999999999999887 333 4678899999999999999999
Q ss_pred HHHHHHHhhcCCC------------CCCCchhhhhhhhhcCCchHHHHHHHHH
Q 036340 519 QVAAEALMKVEPE------------NSTPYVLLYNMYADVGRWDDANEVRLLM 559 (579)
Q Consensus 519 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (579)
...++++++..|+ ++.++..++.++...|++++|..++++.
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999998 6778999999999999999999998754
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=1.8e-17 Score=157.48 Aligned_cols=233 Identities=14% Similarity=0.043 Sum_probs=196.3
Q ss_pred ChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHH
Q 036340 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGC 406 (579)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 406 (579)
+...+......+...|+++.|..+++......+.+..++..++.+|...|++++|...|+++. .+.+..+|..++.+|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 445688888899999999999999999666678889999999999999999999999999875 344577899999999
Q ss_pred HhcCChHHHHHHHHHhHhCCCCCChh-hH----------HHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHH
Q 036340 407 ASHGFATEALELFKSMRSFKVLPTYI-TF----------ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475 (579)
Q Consensus 407 ~~~~~~~~A~~~~~~~~~~~~~p~~~-~~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 475 (579)
...|++++|+..++++.+. .|+.. .+ ..+...+...|++++|..+++++++.....++..++..++.
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999864 45432 22 33477889999999999999999876322225788999999
Q ss_pred HhhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHH
Q 036340 476 IVGRHGRLEDAMDLIKGM-PF-EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDAN 553 (579)
Q Consensus 476 ~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 553 (579)
++...|++++|+..++++ .. +.+..+|..++.++...|++++|+..|+++++..|+++.++..++.+|...|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987 33 3478899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 036340 554 EVRLLMKSNN 563 (579)
Q Consensus 554 ~~~~~~~~~~ 563 (579)
..++++.+..
T Consensus 302 ~~~~~al~~~ 311 (365)
T 4eqf_A 302 SNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999987544
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=7.5e-16 Score=139.99 Aligned_cols=249 Identities=12% Similarity=0.024 Sum_probs=148.7
Q ss_pred HHHHhCCCHHHHHHHHHHhccCCCCCCCc-hhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHH
Q 036340 130 SGLIQNGELDEAARVLVKCGSRCDGGEDL-VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSM 208 (579)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (579)
+.....|+++.|+..++.+... .|.+ ......+..+|...|+++.|+..++... +|+..++..+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~------------~~~~~a~~~l 71 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKPSS------------APELQAVRMF 71 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTS------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcccC------------ChhHHHHHHH
Confidence 3455678888888887776542 2222 3355667778888888888887665532 5667777778
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHc
Q 036340 209 IMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFK 288 (579)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 288 (579)
+..+...++.++|.+.+++++..+.. +.+...+..+...+...|++++|++.++
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~~~--------------------------P~~~~~~~~la~~~~~~g~~~~Al~~l~ 125 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRSVD--------------------------VTNTTFLLMAASIYFYDQNPDAALRTLH 125 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSCCC--------------------------CSCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcccC--------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 88888888888888888776432100 1234445556666777777777777777
Q ss_pred cCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHH---HHHHhccCCCchhhHHHHHHHHhhcCCCCch
Q 036340 289 RMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFS---SILSMSSGIVDLHLGMQIHQMVTKTVIPDVP 365 (579)
Q Consensus 289 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 365 (579)
+ ..+...+..++..+.+.|++++|...|+++.+.. |+..... ..+..+...|+++.|..+++......|.++.
T Consensus 126 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~ 201 (291)
T 3mkr_A 126 Q--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLL 201 (291)
T ss_dssp T--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHH
T ss_pred C--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHH
Confidence 6 4556677777777888888888888888877653 4432111 1112222334455555555443333444555
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHH-HHHHHHHhH
Q 036340 366 INNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATE-ALELFKSMR 423 (579)
Q Consensus 366 ~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~ 423 (579)
+++.++.++...|++++|+..|++.. .+.++.++..++..+...|+.++ +.++++++.
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55555556666666666666665542 22244455555555555555543 345555555
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=5.6e-16 Score=144.67 Aligned_cols=278 Identities=9% Similarity=0.026 Sum_probs=151.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCH
Q 036340 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNL 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 280 (579)
+...+..++..+...|++++|...|+++++.++ .+..++..++.++...|++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----------------------------~~~~~~~~l~~~~~~~~~~ 71 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP----------------------------EREEAWRSLGLTQAENEKD 71 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------------------TCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----------------------------CCHHHHHHHHHHHHHcCCH
Confidence 444566777788888888888888877654221 2334444555555555666
Q ss_pred HHHHHHHccCCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHh
Q 036340 281 ELALDFFKRMPQ---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVT 357 (579)
Q Consensus 281 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 357 (579)
++|...++++.+ .+...+..+...+...|++++|...++++.+.... +...+..+...+
T Consensus 72 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------- 133 (327)
T 3cv0_A 72 GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------- 133 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-------------------------
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH-----------------
Confidence 666555555442 34456666677777777777777777777654321 111111110000
Q ss_pred hcCCCCchHHHHH-HH-HhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhh
Q 036340 358 KTVIPDVPINNAL-IT-MYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYIT 433 (579)
Q Consensus 358 ~~~~~~~~~~~~l-~~-~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 433 (579)
++......+ .. .+...|++++|...++++. .+.+...+..++..+...|++++|+..++++.+.. +.+..+
T Consensus 134 ----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 208 (327)
T 3cv0_A 134 ----VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQL 208 (327)
T ss_dssp ----------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ----HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHH
Confidence 000000111 11 2444555566655555543 22244455556666666666666666666665431 223345
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-------------CH
Q 036340 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-------------DK 499 (579)
Q Consensus 434 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-------------~~ 499 (579)
+..+...+...|++++|...++++++. .+.+...+..++.++...|++++|...++++ ...| +.
T Consensus 209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 286 (327)
T 3cv0_A 209 WNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence 566666666666666666666666543 1224455666666666666666666666655 1112 24
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCC
Q 036340 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPE 531 (579)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 531 (579)
..|..+..++...|++++|...++++++..|+
T Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 287 SMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 56666777777777777777777766655444
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=1e-16 Score=139.24 Aligned_cols=195 Identities=15% Similarity=0.071 Sum_probs=157.9
Q ss_pred CCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh-hhHHHH
Q 036340 361 IPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY-ITFISV 437 (579)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l 437 (579)
|+++..+..+...+...|++++|...|++.. .+.+...+..+..++.+.|++++|+..+++..+. .|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 5677788889999999999999999999874 3446678889999999999999999999999964 5654 488888
Q ss_pred HHHhccc-----------CcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCCCHHHHHH
Q 036340 438 LSACAHA-----------GLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPDKAVWGA 504 (579)
Q Consensus 438 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~ 504 (579)
..++... |++++|+..+++.++. .| +...+..++.++...|++++|+..++++ ....++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 9999999999999864 45 5778889999999999999999999987 21278889999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 505 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
+..++...|++++|+..|+++++.+|+++.++..++.++...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998753
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=4.3e-16 Score=151.31 Aligned_cols=371 Identities=12% Similarity=0.028 Sum_probs=208.7
Q ss_pred HHHHHHccCCHHHHHHHhhcCCC-CchhhHHHHHHHHHhcCCh---hhHHHHHccCCCCCcchHHHHHHHHHhCC-----
Q 036340 66 VISGYAKTGEMEEALRLFNSMPA-RNVVSWNAMISGFLQNGDV---ANAIEFFDRMPGRDSASLSALVSGLIQNG----- 136 (579)
Q Consensus 66 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g----- 136 (579)
+...+.+.|++++|+++|++..+ .++.++..|...|...|+. ++|++.|++..+.++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 45556667777777777776652 3445555666666666666 77777777776666666667776555544
Q ss_pred CHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHH---HHHHHccccccCCCCCCCccCCcchHHHHHHHHHHH
Q 036340 137 ELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEE---ARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYA 213 (579)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (579)
++++|+..|+++... +.+ .++..++..|...+..++ +.+.+.... . ..++..+..+...|.
T Consensus 89 ~~~~A~~~~~~Aa~~--g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~--------~---~g~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 89 EHHEAESLLKKAFAN--GEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQ--------A---AGYPEAGLAQVLLYR 152 (452)
T ss_dssp HHHHHHHHHHHHHHT--TCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHH--------H---HTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--CCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHH--------H---CCCHHHHHHHHHHHH
Confidence 677888888887773 222 267777777776554433 333333332 1 123456667777777
Q ss_pred hcC----CHHHHHHHHHhcCCCChhHHHHHHHHHHhcC---ChHHHHHHhhcCC---CCChhhHHHHHHHHHhc----CC
Q 036340 214 KAG----DVVSAREIFEQMLERDTFSWNTMISGYIHVL---DMEEASNLFVKMP---HPDTLTWNAMVSGYAQI----GN 279 (579)
Q Consensus 214 ~~~----~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~----g~ 279 (579)
..+ +.+.+..+++.....++..+..+...|...| +.++|+..|++.. +++...+..|...|... ++
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCC
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 776 4455566666666667778888888888888 7788888887765 34444446677777554 67
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHH-H--HhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccC----CCchhhHHHH
Q 036340 280 LELALDFFKRMPQKNLVSWNSMIAG-C--ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSG----IVDLHLGMQI 352 (579)
Q Consensus 280 ~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 352 (579)
+++|..+|++....++..+..|... + ...+++++|+..|++..+.| +...+..+...+.. ..+.+.|..+
T Consensus 233 ~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 233 EKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYYEGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8888888887774455667777766 4 45788888888888887765 34444444444431 1266666666
Q ss_pred HHHHhhcCCCCchHHHHHHHHhhh----cCCHHHHHHHHHhccCCCCeeeHHHHHHHHHh----cCChHHHHHHHHHhHh
Q 036340 353 HQMVTKTVIPDVPINNALITMYAR----CGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS----HGFATEALELFKSMRS 424 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~ 424 (579)
++... +.++.....+..+|.. ..++++|..+|+......++.....|...|.. ..+..+|..+|+...+
T Consensus 310 ~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 66622 4455555556655554 23666666666665434445555556665553 3456666666666666
Q ss_pred CCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHH
Q 036340 425 FKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459 (579)
Q Consensus 425 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 459 (579)
.|. ++.......+......++..+|..+.++..+
T Consensus 387 ~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 387 QDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 552 2222222223333344455556555555443
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=3.4e-16 Score=152.03 Aligned_cols=376 Identities=9% Similarity=-0.008 Sum_probs=209.9
Q ss_pred HHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCH---HHHHHHHHhcCCCChhHHHHHH
Q 036340 164 TLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDV---VSAREIFEQMLERDTFSWNTMI 240 (579)
Q Consensus 164 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~l~ 240 (579)
.+...+.+.|++++|.++|+++. +.| +...+..+...|...|+. ++|...|++..+.++..+..+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa--------~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg 76 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLA--------ELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLG 76 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHT---CCTGGGTCC----------------------------CHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH--------HCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHH
Confidence 35666777788888888888875 222 334455566666677777 7888888887766666677777
Q ss_pred HHHHhcC-----ChHHHHHHhhcCC-CCChhhHHHHHHHHHhcCCHHH---HHHHHccCCC-CChhhHHHHHHHHHhCCC
Q 036340 241 SGYIHVL-----DMEEASNLFVKMP-HPDTLTWNAMVSGYAQIGNLEL---ALDFFKRMPQ-KNLVSWNSMIAGCETNKD 310 (579)
Q Consensus 241 ~~~~~~~-----~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 310 (579)
..+...+ ++++|+..|++.. ..+...+..|...|...+..++ +.+.+..... .++..+..|...|...+.
T Consensus 77 ~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 77 RLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp HHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTC
T ss_pred HHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence 6555544 6677887777766 3344466667777666554333 3333332222 355666677777777776
Q ss_pred chHHHHHHHHHHHcCCCCChhhHHHHHHhccCCC---chhhHHHHHHHHhhcCCCCchHHHHHHHHhhhc----CCHHHH
Q 036340 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIV---DLHLGMQIHQMVTKTVIPDVPINNALITMYARC----GAIVEA 383 (579)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A 383 (579)
++++......+.+.-...+...+..+...+...| +.+.|..+++.....-+++...+..+..+|... +++++|
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 6555555433333222223335666666666677 777777777774444455555555566666554 677778
Q ss_pred HHHHHhccCCCCeeeHHHHHHH-H--HhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccC-----cHHHHHHHHH
Q 036340 384 RIIFEEMKLLKNVVSWNAMIGG-C--ASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG-----LVEEGRQHFK 455 (579)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~ 455 (579)
..+|+... +.++..+..+... + ...+++++|+++|++..+.| +...+..|...|. .| ++++|...|+
T Consensus 237 ~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 237 QALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 88777776 5566667777666 3 35677778888888777655 4445555555554 34 7777877777
Q ss_pred HhHHhhCCCCCcchhHHHHHHhhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhh
Q 036340 456 SMVNEYGIEPRIEHFASLVDIVGR----HGRLEDAMDLIKGMPFEPDKAVWGALLGACRV----HNNVELAQVAAEALMK 527 (579)
Q Consensus 456 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~ 527 (579)
+.. +-++.....|+.+|.. ..++++|...|++.-..-++.....+...|.. ..+.++|...|+++.+
T Consensus 312 ~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 312 KAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp TTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 664 2345566666666655 33777788777776323344555556655543 3477778888877777
Q ss_pred cCCCCCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 528 VEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 528 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
..+.+.......+......++..+|..+.++.+
T Consensus 387 ~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 387 QDTPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp TCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 665433222222222233445666666666554
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.8e-15 Score=135.83 Aligned_cols=218 Identities=10% Similarity=0.005 Sum_probs=124.5
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhh
Q 036340 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYAR 376 (579)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (579)
.+..+...+...|++++|+..|+++.+.. .+...+.. ++.++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~----------------------------------~~~~~~~ 50 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNN----------------------------------RAAAEYE 50 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHH----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHH----------------------------------HHHHHHH
Confidence 45566666667777777777777666554 34444433 3444444
Q ss_pred cCCHHHHHHHHHhcc-CCC----C----eeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcH
Q 036340 377 CGAIVEARIIFEEMK-LLK----N----VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLV 447 (579)
Q Consensus 377 ~~~~~~A~~~~~~~~-~~~----~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 447 (579)
.|++++|...+++.. ..| + ...+..+...+...|++++|+..++++.+. .|+. ..+...|++
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~ 121 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNA 121 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHH
Confidence 444444444444332 011 1 234555555555666666666666665542 3332 223344556
Q ss_pred HHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 036340 448 EEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-P-FEPDKAVWGALLGACRVHNNVELAQVAAEA 524 (579)
Q Consensus 448 ~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 524 (579)
++|...++.+... .| +...+..++.++...|++++|...++++ . .+.+...+..++..+...|++++|+..+++
T Consensus 122 ~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 122 EKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 6666666655431 23 3455556666666666666666666655 2 223455666666666667777777777777
Q ss_pred HhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhC
Q 036340 525 LMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562 (579)
Q Consensus 525 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (579)
+++..|+++.++..++.++...|++++|.+.++++.+.
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77777776666677777777777777777776666543
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=5.7e-15 Score=133.76 Aligned_cols=244 Identities=9% Similarity=-0.047 Sum_probs=155.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCC
Q 036340 267 WNAMVSGYAQIGNLELALDFFKRMPQ---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI 343 (579)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (579)
+...+..+...|++++|+..|+++.+ .+...+..+..++...|++++|+..+++..+.+..|+ .
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~----------- 72 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK--A----------- 72 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT--C-----------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh--H-----------
Confidence 34445555555666666666555442 2233555555555556666666666555554221111 1
Q ss_pred CchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHH
Q 036340 344 VDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKS 421 (579)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 421 (579)
....+..++..+...|++++|...|++.. .+.+...|..+...+...|++++|+..+++
T Consensus 73 -------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 73 -------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred -------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 11235667777777788888888777764 234556777788888888888888888888
Q ss_pred hHhCCCCCCh-hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCC---hHHHHHHHHhC---
Q 036340 422 MRSFKVLPTY-ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGR---LEDAMDLIKGM--- 493 (579)
Q Consensus 422 ~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~--- 493 (579)
..+. .|+. ..+..+...+...+++++|...++++++. .| +...+..++.++...|+ +++|...++++
T Consensus 134 al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 134 QIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred Hhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 7753 4543 36666662344445888888888888754 34 35666677777777777 66677777665
Q ss_pred -CCCCC------HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcC
Q 036340 494 -PFEPD------KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547 (579)
Q Consensus 494 -~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 547 (579)
...|+ ...+..+...+...|++++|...++++++++|+++.++..+..+....+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 12233 2467778888999999999999999999999999988888777665544
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3e-15 Score=134.39 Aligned_cols=189 Identities=12% Similarity=0.039 Sum_probs=161.2
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCC--CCC----hhhHHH
Q 036340 365 PINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKV--LPT----YITFIS 436 (579)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~----~~~~~~ 436 (579)
..+..++..+...|++++|...|++.. . .+...+..+..++...|++++|+..+++..+... .|+ ..++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 456778889999999999999999874 4 7778899999999999999999999999886421 112 468888
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC
Q 036340 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNN 514 (579)
Q Consensus 437 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 514 (579)
+...+...|++++|...+++++.. .|+ ...+...|++++|...++++ ...| +...+..++..+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~---~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE---HRT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc---Cch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999864 444 34567788899999999987 3344 56688888999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 515 VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 515 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
+++|+..++++++..|.++.++..++.++...|++++|...++++.+...
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 99999999999999999999999999999999999999999999987653
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=6.7e-15 Score=133.56 Aligned_cols=241 Identities=8% Similarity=-0.121 Sum_probs=172.9
Q ss_pred CCCchHHHHHHHHHHHcCCC---CChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHH
Q 036340 308 NKDYEGAIKLFIQMQVEGEK---PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEAR 384 (579)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 384 (579)
.|++++|+..|+++.+.... .+..++..+...+...|+++.|...++......+.+..++..++..+...|++++|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 34555555555555543211 123344444555555666666666655544444556677788888999999999999
Q ss_pred HHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhC
Q 036340 385 IIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYG 462 (579)
Q Consensus 385 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 462 (579)
..|++.. .+.+...+..++.++...|++++|+..++++.+. .|+.......+..+...|++++|...++.....
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-- 173 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-- 173 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 9998875 3446778899999999999999999999999864 566555555555567779999999999888764
Q ss_pred CCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCc
Q 036340 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPD-----KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPY 536 (579)
Q Consensus 463 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 536 (579)
.|+......++..+...++.++|...+++. ...|+ ...+..++..+...|++++|...++++++.+|++.
T Consensus 174 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--- 249 (275)
T 1xnf_A 174 -SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF--- 249 (275)
T ss_dssp -SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC---
T ss_pred -CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH---
Confidence 233333345777788888899999998876 33332 56788889999999999999999999999999874
Q ss_pred hhhhhhhhhcCCchHHHHHH
Q 036340 537 VLLYNMYADVGRWDDANEVR 556 (579)
Q Consensus 537 ~~l~~~~~~~g~~~~A~~~~ 556 (579)
...+.++...|++++|.+.+
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 45577888999999998876
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=3.3e-15 Score=135.62 Aligned_cols=240 Identities=10% Similarity=-0.034 Sum_probs=157.6
Q ss_pred hhhcCCCHHHHHHHhccCCCC-------chhHHHHHHHHHHHcCCCCChHHHHHHHhhCC---CCCcchHHHHHHHHHcc
Q 036340 4 GYVKRREMAKARKLFDEMPQR-------DVVSWNVMISGYISSRGSGFLEEARYLFDIMP---ERDCVTWNTVISGYAKT 73 (579)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 73 (579)
.+...|++++|+..|+++.+. ++..+..+..++...|+ +++|...|+++. +.++.++..+...|...
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL---RALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHccc---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 445678888888888887652 35567777777877777 888888888876 34567788888888888
Q ss_pred CCHHHHHHHhhcCC---CCchhhHHHHHHHHHhcCChhhHHHHHccCCC--CCcchHHHHHHHHHhCCCHHHHHHHHHHh
Q 036340 74 GEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRMPG--RDSASLSALVSGLIQNGELDEAARVLVKC 148 (579)
Q Consensus 74 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 148 (579)
|++++|+..|+++. +.+..++..++.++...|++++|...|+++.. |+.......+..+...|++++|...++++
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88888888888776 34566777788888888888888888877653 33333333444445667888888888776
Q ss_pred ccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCC-cchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 036340 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK-RNIVSWNSMIMCYAKAGDVVSAREIFEQ 227 (579)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 227 (579)
... .+++...+ .++..+...++.++|...++.+.... .... .+..++..++.++.+.|++++|...|++
T Consensus 171 ~~~---~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 171 FEK---SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDN------TSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHH---SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSH------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred Hhc---CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccc------ccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 663 23333333 36666677777777887777776110 0000 1146677777777777888888777777
Q ss_pred cCCCChhHHHHHHHHHHhcCChHHHHHHh
Q 036340 228 MLERDTFSWNTMISGYIHVLDMEEASNLF 256 (579)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (579)
+++.++..+.....++...|++++|+..+
T Consensus 241 al~~~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 241 AVANNVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCCTTCHHHHHHHHHHHHHHHC----
T ss_pred HHhCCchhHHHHHHHHHHHHHHHhhHHHH
Confidence 76655544444445555555555555443
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=6.5e-15 Score=127.84 Aligned_cols=186 Identities=16% Similarity=0.070 Sum_probs=88.9
Q ss_pred CcchHHHHHHHHHccCCHHHHHHHhhcCC---CCchhhHHHHHHHHHhcCChhhHHHHHccCCC---CCcchHHHHHHHH
Q 036340 59 DCVTWNTVISGYAKTGEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRMPG---RDSASLSALVSGL 132 (579)
Q Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 132 (579)
++..+..+...+.+.|++++|+..|++.. +.++.++..+..++.+.|++++|+..|++..+ .+...+..+...+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 33444444455555555555555555443 22334444455555555555555555544332 1233444444444
Q ss_pred HhC-----------CCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcc
Q 036340 133 IQN-----------GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRN 201 (579)
Q Consensus 133 ~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 201 (579)
... |++++|+..++++++ ..|.+..++..++.++...|++++|+..|+++. ... .+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~--~~ 150 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQAL--------ALE--DT 150 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHC--CC
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH--------hcc--cc
Confidence 444 666666666666555 334445556666666666666666666666655 222 44
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHhh
Q 036340 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLE--R-DTFSWNTMISGYIHVLDMEEASNLFV 257 (579)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (579)
...+..+..++...|++++|...|++.++ | +...+..+...+...|++++|+..|+
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 55555666666666666666666665533 1 23344444444444444444444444
No 44
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.59 E-value=8.3e-16 Score=153.98 Aligned_cols=126 Identities=13% Similarity=0.150 Sum_probs=108.8
Q ss_pred CchHHHHHHHHhhhcCCHHHHHHHHHhcc------CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHH
Q 036340 363 DVPINNALITMYARCGAIVEARIIFEEMK------LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFIS 436 (579)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 436 (579)
-..+|++++++|++.|++++|.++|.+|. ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34578999999999999999999997753 579999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCc-HHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC
Q 036340 437 VLSACAHAGL-VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 437 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 493 (579)
+|.++++.|+ .++|.++|++|..+ |+.||..+|+.++....+. ..++.++++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~----~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA----TVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH----HHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH----HHHHHHHHh
Confidence 9999999997 47899999999877 9999999999887655544 444444444
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=4.1e-14 Score=132.84 Aligned_cols=244 Identities=9% Similarity=0.030 Sum_probs=166.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCc-hhhHHHHHHHHhhcCCCCchHHHHHHHHhh
Q 036340 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVD-LHLGMQIHQMVTKTVIPDVPINNALITMYA 375 (579)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (579)
.|..+...+...|++++|+..|+++++.... +...|..+..++...|+ ++.|...++......+.+..+|..+..++.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3444444444555555555555555443211 23333444444444443 455554444444444556666777888888
Q ss_pred hcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHHhcc-cCcHHHH-
Q 036340 376 RCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVLSACAH-AGLVEEG- 450 (579)
Q Consensus 376 ~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~~~~~~a- 450 (579)
..|++++|+..|+++. .+.+...|..+..++...|++++|+..++++++. .|+ ...|..+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 8888888888888764 3446678888888888899999999999998864 554 4578888888877 5554666
Q ss_pred ----HHHHHHhHHhhCCCC-CcchhHHHHHHhhccC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcC--------C
Q 036340 451 ----RQHFKSMVNEYGIEP-RIEHFASLVDIVGRHG--RLEDAMDLIKGMPFEP-DKAVWGALLGACRVHN--------N 514 (579)
Q Consensus 451 ----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~--------~ 514 (579)
+..+++++.. .| +...|..+..++...| ++++|++.+.++...| +...+..++.++.+.| +
T Consensus 256 ~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 256 LEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 4778877753 45 5677888888888877 6888888888775445 5667788888887763 2
Q ss_pred -HHHHHHHHHHH-hhcCCCCCCCchhhhhhhhhc
Q 036340 515 -VELAQVAAEAL-MKVEPENSTPYVLLYNMYADV 546 (579)
Q Consensus 515 -~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 546 (579)
.++|+.+|+++ .+++|.....|..++..+..+
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 58899999999 899999888888777766543
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=3.3e-14 Score=127.08 Aligned_cols=198 Identities=12% Similarity=-0.026 Sum_probs=138.5
Q ss_pred chHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHh
Q 036340 364 VPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC 441 (579)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 441 (579)
...+..++..+...|++++|...|+++. .+.+...+..+...+...|++++|++.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3455666777777777777777777653 23345567777777777777777777777776542 22444666777777
Q ss_pred cccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH
Q 036340 442 AHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELA 518 (579)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A 518 (579)
...|++++|.++++++.. .+..| +...+..++.++...|++++|...++++ ...| +...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777887777777764 12344 3556667777777778888877777766 2223 566777777777778888888
Q ss_pred HHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 519 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
...++++++..|.++..+..++.++...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888887777777777777777888888888888887776654
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.7e-14 Score=128.08 Aligned_cols=177 Identities=9% Similarity=0.015 Sum_probs=93.5
Q ss_pred CchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHH
Q 036340 363 DVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440 (579)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 440 (579)
+...+..++..+...|++++|...++++. .+.+...+..+...+...|++++|++.++++.+.. +.+...+..+...
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTV 134 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 33444455555555566666655555543 12234445555555666666666666666655432 2233355555555
Q ss_pred hcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHhhcCCHHHH
Q 036340 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-P-FEPDKAVWGALLGACRVHNNVELA 518 (579)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A 518 (579)
+...|++++|...++++++. .+.+...+..++.++...|++++|...++++ . .+.+...+..++.++...|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 56666666666666655542 1223445555555555666666665555554 1 122344555555555566666666
Q ss_pred HHHHHHHhhcCCCCCCCchhhhhh
Q 036340 519 QVAAEALMKVEPENSTPYVLLYNM 542 (579)
Q Consensus 519 ~~~~~~~~~~~p~~~~~~~~l~~~ 542 (579)
...++++++..|+++.++..++.+
T Consensus 213 ~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 213 LEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHccCcchHHHHHHHHHH
Confidence 666666666666555544444443
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=3.8e-14 Score=124.18 Aligned_cols=199 Identities=14% Similarity=0.025 Sum_probs=152.9
Q ss_pred CchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHH
Q 036340 363 DVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440 (579)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 440 (579)
++..+..++..+...|++++|...|+++. .+.+...+..++..+...|++++|++.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45566777888888888888888888764 23456677788888888888888888888887642 2345577778888
Q ss_pred hccc-CcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHH
Q 036340 441 CAHA-GLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVE 516 (579)
Q Consensus 441 ~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 516 (579)
+... |++++|...++++++ .+..| +...+..++.++...|++++|...++++ ...| +...+..++..+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888875 22334 3566778888888888888888888876 2233 5777888888888888888
Q ss_pred HHHHHHHHHhhcCC-CCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 517 LAQVAAEALMKVEP-ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 517 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
+|...++++++..| .++..+..++..+...|+.++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 89888888888888 777778888888888888888888888876544
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=1.4e-13 Score=124.48 Aligned_cols=224 Identities=12% Similarity=-0.045 Sum_probs=136.2
Q ss_pred ChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHH
Q 036340 294 NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITM 373 (579)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 373 (579)
++.++..+...+...|++++|+..|++..+.+ +...+ ..+...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~----------------------------------~~lg~~ 47 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGC----------------------------------FNLGVL 47 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHH----------------------------------HHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHH----------------------------------HHHHHH
Confidence 55667777888888888888888888877622 22333 334444
Q ss_pred hhh----cCCHHHHHHHHHhccCCCCeeeHHHHHHHHHh----cCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcc--
Q 036340 374 YAR----CGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS----HGFATEALELFKSMRSFKVLPTYITFISVLSACAH-- 443 (579)
Q Consensus 374 ~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 443 (579)
|.. .+++++|...|++.....++..+..+...|.. .+++++|+..|++..+.+ +..++..+...|..
T Consensus 48 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 48 YYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred HHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 444 55666666666554322344555556666666 666666666666666543 44455555555555
Q ss_pred --cCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cC
Q 036340 444 --AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR----HGRLEDAMDLIKGMPFEPDKAVWGALLGACRV----HN 513 (579)
Q Consensus 444 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 513 (579)
.+++++|...|++..+. + +...+..++.+|.. .+++++|...+++.-...++..+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 66666666666666542 2 34445555666655 66666666666655212345556666666666 66
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCchhhhhhhhh----cCCchHHHHHHHHHHhCC
Q 036340 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYAD----VGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 514 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 563 (579)
++++|+..++++.+..| +.++..++.+|.. .+++++|.+.+++..+.+
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777777777666655 3456666666666 677777777776666555
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=1.5e-13 Score=122.84 Aligned_cols=205 Identities=10% Similarity=-0.033 Sum_probs=161.4
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHh
Q 036340 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMY 374 (579)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (579)
...|..+...+...|++++|...|+++.+.. +.+...+..++..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------------------------------~~~~~~~~~la~~~ 81 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-----------------------------------PSSADAHAALAVVF 81 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------------------------------CChHHHHHHHHHHH
Confidence 3456667777777777777777777766542 22344556677788
Q ss_pred hhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh-hhHHHHHHHhcccCcHHHHH
Q 036340 375 ARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY-ITFISVLSACAHAGLVEEGR 451 (579)
Q Consensus 375 ~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~ 451 (579)
...|++++|.+.++++. .+.+...+..+...+...|++++|+++++++...+..|+. ..+..+...+...|++++|.
T Consensus 82 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 82 QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888764 2345667888889999999999999999999864355654 47788888999999999999
Q ss_pred HHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcC
Q 036340 452 QHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFE-PDKAVWGALLGACRVHNNVELAQVAAEALMKVE 529 (579)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 529 (579)
..++++++. .+.+...+..++.++...|++++|...++++ ... .+...+..+...+...|++++|...++++.+..
T Consensus 162 ~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 162 EYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999998764 1335778889999999999999999999887 333 467788888888999999999999999999999
Q ss_pred CCCCCCc
Q 036340 530 PENSTPY 536 (579)
Q Consensus 530 p~~~~~~ 536 (579)
|+++...
T Consensus 240 p~~~~~~ 246 (252)
T 2ho1_A 240 PGSLEYQ 246 (252)
T ss_dssp TTSHHHH
T ss_pred CCCHHHH
Confidence 9986543
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=1.3e-14 Score=129.01 Aligned_cols=199 Identities=10% Similarity=0.028 Sum_probs=155.9
Q ss_pred CchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHH
Q 036340 363 DVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSA 440 (579)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 440 (579)
....+..++..+...|++++|...|+++. .+.+...+..+...+...|++++|+..++++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 45566778888999999999999999874 23456778889999999999999999999998653 2355688888999
Q ss_pred hcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHH
Q 036340 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PF-EPDKAVWGALLGACRVHNNVELA 518 (579)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A 518 (579)
+...|++++|...++++.+. .+.+...+..++.++...|++++|...++++ .. +.+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999864 2346778889999999999999999999987 33 34678889999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 519 QVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 519 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
+..++++++..|+++.++..++.+|...|++++|...++++.+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 9999999999999999999999999999999999999999987654
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=1.3e-13 Score=124.75 Aligned_cols=190 Identities=13% Similarity=0.044 Sum_probs=92.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchH
Q 036340 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203 (579)
Q Consensus 124 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (579)
.+...+..+...|++++|+..++++.+ ..|.+..++..++.++...|++++|++.++++.... ........
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~ 75 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEA---KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV------NATKAKSA 75 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHH---TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS------CTTTCCHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc------CchhHHHH
Confidence 344455556666666666666666655 233444456666666666666666666666665210 00011122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHhhcCC---CCChhhHHHHHHHHHhc
Q 036340 204 SWNSMIMCYAKAGDVVSAREIFEQMLER---DTFSWNTMISGYIHVLDMEEASNLFVKMP---HPDTLTWNAMVSGYAQI 277 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 277 (579)
+|..+..++...|++++|.+.|++.++. +...+..+...+...|++++|+..|++.. +.+..++..+...+...
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 3556666666666666666666655431 23344444444444444444444444444 22333444444122222
Q ss_pred CCHHHHHHHHccCCC---CChhhHHHHHHHHHhCCC---chHHHHHHHHHH
Q 036340 278 GNLELALDFFKRMPQ---KNLVSWNSMIAGCETNKD---YEGAIKLFIQMQ 322 (579)
Q Consensus 278 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 322 (579)
+++++|...|+++.+ .+...+..+..++...|+ +++|...|++..
T Consensus 156 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 355555555544432 123334444444444444 444555444443
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=2.9e-14 Score=133.88 Aligned_cols=227 Identities=11% Similarity=0.082 Sum_probs=192.6
Q ss_pred hhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCC-HHHHHHHHHhcc--CCCCeeeHHHHHHHHH
Q 036340 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGA-IVEARIIFEEMK--LLKNVVSWNAMIGGCA 407 (579)
Q Consensus 331 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 407 (579)
..+..+..++...|+++.|...++......+.+..+|..+..++...|+ +++|+..|+++. .+.+...|..+..++.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3455566677888999999999999777888899999999999999997 999999999875 3446778999999999
Q ss_pred hcCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhc-cCChH
Q 036340 408 SHGFATEALELFKSMRSFKVLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGR-HGRLE 484 (579)
Q Consensus 408 ~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~g~~~ 484 (579)
..|++++|+..|+++++. .|+ ...|..+..++...|++++|+..++++++. .| +...|..++.++.. .|..+
T Consensus 178 ~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999964 565 458999999999999999999999999864 45 67889999999999 66658
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHhhcC--CHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcC--------
Q 036340 485 DA-----MDLIKGM-PFEP-DKAVWGALLGACRVHN--NVELAQVAAEALMKVEPENSTPYVLLYNMYADVG-------- 547 (579)
Q Consensus 485 ~A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 547 (579)
+| +..++++ ...| +...|..+..++...| ++++|+..++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 88 4667665 4445 6778999998888887 689999999998 899999999999999999875
Q ss_pred -CchHHHHHHHHH-HhCC
Q 036340 548 -RWDDANEVRLLM-KSNN 563 (579)
Q Consensus 548 -~~~~A~~~~~~~-~~~~ 563 (579)
.+++|.++++++ .+..
T Consensus 332 ~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 332 DILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 358999999998 5544
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=3.6e-14 Score=119.93 Aligned_cols=165 Identities=14% Similarity=0.071 Sum_probs=122.9
Q ss_pred CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh-hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHH
Q 036340 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY-ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASL 473 (579)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 473 (579)
+...|..++..|...|++++|++.|++..+. .|+. .++..+..++...|++++|...++.+... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 3456777777777788888888888877753 4543 37777777778888888888887777643 12245566667
Q ss_pred HHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchH
Q 036340 474 VDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551 (579)
Q Consensus 474 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 551 (579)
+..+...++++.|...+.+. ...| +...+..++.++...|++++|+..|+++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77777788888888877776 2233 566777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhCC
Q 036340 552 ANEVRLLMKSNN 563 (579)
Q Consensus 552 A~~~~~~~~~~~ 563 (579)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 888888877654
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=1e-12 Score=118.87 Aligned_cols=228 Identities=9% Similarity=-0.044 Sum_probs=176.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHccCCCC-ChhhHHHHHHHHHh----CCCchHHHHHHHHHHHcCCCCChhhHHHH
Q 036340 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQK-NLVSWNSMIAGCET----NKDYEGAIKLFIQMQVEGEKPDRHTFSSI 336 (579)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (579)
.++.++..+...+...|++++|...|++..++ +...+..+...|.. .+++++|+..|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~--- 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC--- 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH---
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH---
Confidence 46678888999999999999999999988764 56688888999999 999999999999988764 33333
Q ss_pred HHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhh----cCCHHHHHHHHHhccCCCCeeeHHHHHHHHHh----
Q 036340 337 LSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYAR----CGAIVEARIIFEEMKLLKNVVSWNAMIGGCAS---- 408 (579)
Q Consensus 337 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~---- 408 (579)
..+...|.. .+++++|...|++.....+...+..+...|..
T Consensus 78 -------------------------------~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 78 -------------------------------HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp -------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSS
T ss_pred -------------------------------HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCc
Confidence 345555666 77777777777766534466677778888887
Q ss_pred cCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcc----cCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhc----c
Q 036340 409 HGFATEALELFKSMRSFKVLPTYITFISVLSACAH----AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR----H 480 (579)
Q Consensus 409 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 480 (579)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+. .+...+..++.+|.. .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence 888888888888888755 44566667777766 88899999998888753 245667778888888 8
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhhcCCCCC
Q 036340 481 GRLEDAMDLIKGMPFEPDKAVWGALLGACRV----HNNVELAQVAAEALMKVEPENS 533 (579)
Q Consensus 481 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~ 533 (579)
+++++|+..+++.-...+...+..+...+.. .+++++|+..|+++.+..|++.
T Consensus 200 ~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 200 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8999999988876212236777888888887 8899999999999999888754
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=1.8e-14 Score=140.87 Aligned_cols=206 Identities=10% Similarity=-0.015 Sum_probs=175.4
Q ss_pred hhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCH-HHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhH
Q 036340 347 HLGMQIHQMVTKTVIPDVPINNALITMYARCGAI-VEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMR 423 (579)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 423 (579)
+.+...++......+.+...+..+...+...|++ ++|+..|++.. .+.+...|..+..+|...|++++|+..|++..
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444556777888899999999999 99999998874 33457789999999999999999999999999
Q ss_pred hCCCCCChhhHHHHHHHhccc---------CcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhcc--------CChHH
Q 036340 424 SFKVLPTYITFISVLSACAHA---------GLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRH--------GRLED 485 (579)
Q Consensus 424 ~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--------g~~~~ 485 (579)
+ +.|+...+..+...+... |++++|+..++++++. .| +...+..++.+|... |++++
T Consensus 165 ~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 165 T--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp T--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred h--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 5 468877888999999999 9999999999999864 44 578888999999988 99999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHH
Q 036340 486 AMDLIKGM-PFEP----DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557 (579)
Q Consensus 486 A~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 557 (579)
|+..|+++ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.++...|++++|.+.+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999987 3344 788999999999999999999999999999999999999999999999999999997543
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=2.3e-13 Score=119.09 Aligned_cols=207 Identities=13% Similarity=-0.029 Sum_probs=158.4
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHh
Q 036340 295 LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMY 374 (579)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (579)
+..+..++..+...|++++|...|+++.+.. +.+...+..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~ 52 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-----------------------------------PKNELAWLVRAEIY 52 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-----------------------------------ccchHHHHHHHHHH
Confidence 4456667777777777777777777766542 22334456677778
Q ss_pred hhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhc-CChHHHHHHHHHhHhCCCCCCh-hhHHHHHHHhcccCcHHHH
Q 036340 375 ARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASH-GFATEALELFKSMRSFKVLPTY-ITFISVLSACAHAGLVEEG 450 (579)
Q Consensus 375 ~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a 450 (579)
...|++++|...+++.. .+.+...+..++..+... |++++|+..++++.+.+..|+. ..+..+..++...|++++|
T Consensus 53 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 53 QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888764 234566788888889999 9999999999998873344543 4778888899999999999
Q ss_pred HHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CC-C-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhh
Q 036340 451 RQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PF-E-PDKAVWGALLGACRVHNNVELAQVAAEALMK 527 (579)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 527 (579)
...++++++. .+.+...+..++.++...|++++|...++++ .. + .+...+..+...+...|+.+.|...++.+.+
T Consensus 133 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999998764 1235678888999999999999999999887 22 3 4666777777778899999999999999999
Q ss_pred cCCCCCCCchh
Q 036340 528 VEPENSTPYVL 538 (579)
Q Consensus 528 ~~p~~~~~~~~ 538 (579)
..|+++.....
T Consensus 211 ~~p~~~~~~~~ 221 (225)
T 2vq2_A 211 NFPYSEELQTV 221 (225)
T ss_dssp HCTTCHHHHHH
T ss_pred hCCCCHHHHHH
Confidence 99998764443
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=2e-14 Score=138.83 Aligned_cols=266 Identities=13% Similarity=0.032 Sum_probs=169.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHccCCC--CC-h----hhHHHHHHHHHhCCCchHHHHHHHHHHHcCCC-CChhhHHHHH
Q 036340 266 TWNAMVSGYAQIGNLELALDFFKRMPQ--KN-L----VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK-PDRHTFSSIL 337 (579)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 337 (579)
.+..+...+...|++++|...|+++.+ ++ . ..+..+...|...|++++|+..+++..+.... .+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------- 121 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-------- 121 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC--------
Confidence 344455566666777777776666553 22 2 24556666666667777776666665432100 00
Q ss_pred HhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-C------CC-CeeeHHHHHHHHHhc
Q 036340 338 SMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-L------LK-NVVSWNAMIGGCASH 409 (579)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~------~~-~~~~~~~l~~~~~~~ 409 (579)
.+....++..+...|...|++++|...+++.. . .+ ...++..+...|...
T Consensus 122 ----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 122 ----------------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 11123345566667777777777777776543 0 11 233566677777777
Q ss_pred CC-----------------hHHHHHHHHHhHhC----CCCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC-
Q 036340 410 GF-----------------ATEALELFKSMRSF----KVLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR- 466 (579)
Q Consensus 410 ~~-----------------~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 466 (579)
|+ +++|++.+++..+. +..|. ..++..+...+...|++++|...+++.++...-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 77 77777777765432 11122 236667777888888888888888877653211111
Q ss_pred ---cchhHHHHHHhhccCChHHHHHHHHhC-C----CC---CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC--
Q 036340 467 ---IEHFASLVDIVGRHGRLEDAMDLIKGM-P----FE---PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS-- 533 (579)
Q Consensus 467 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-- 533 (579)
...+..++.+|...|++++|...+++. . .. .....+..+...+...|++++|...++++++..+...
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 226677888888888888888888765 1 11 1245667777888888899999988888887654432
Q ss_pred ----CCchhhhhhhhhcCCchHHHHHHHHHHh
Q 036340 534 ----TPYVLLYNMYADVGRWDDANEVRLLMKS 561 (579)
Q Consensus 534 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (579)
.++..++.+|...|++++|.+++++..+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3677888888899999999888887754
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=8e-14 Score=130.50 Aligned_cols=200 Identities=14% Similarity=0.009 Sum_probs=145.3
Q ss_pred chHHHHHHHHhhhcCCHHHHHHHHHhcc----CCCC----eeeHHHHHHHHHhcCC--------------------hHHH
Q 036340 364 VPINNALITMYARCGAIVEARIIFEEMK----LLKN----VVSWNAMIGGCASHGF--------------------ATEA 415 (579)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~--------------------~~~A 415 (579)
..++..+...+...|++++|...+++.. ..++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 3455667777888888888888877653 1122 2356777788888888 8888
Q ss_pred HHHHHHhHhC----CCCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC----cchhHHHHHHhhccCChHHH
Q 036340 416 LELFKSMRSF----KVLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR----IEHFASLVDIVGRHGRLEDA 486 (579)
Q Consensus 416 ~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 486 (579)
++.+++.... +..|. ..++..+...+...|++++|...++++++.....++ ...+..++.++...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888776532 11222 236777778888999999999999887653211111 23677888899999999999
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC------CCchhhhhhhhhcCCchHH
Q 036340 487 MDLIKGM----PFEPD----KAVWGALLGACRVHNNVELAQVAAEALMKVEPENS------TPYVLLYNMYADVGRWDDA 552 (579)
Q Consensus 487 ~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A 552 (579)
...+++. +..++ ..++..+...+...|++++|...++++++..|... .++..++.+|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9988876 11112 45677788889999999999999999987665432 3688899999999999999
Q ss_pred HHHHHHHHhCC
Q 036340 553 NEVRLLMKSNN 563 (579)
Q Consensus 553 ~~~~~~~~~~~ 563 (579)
..++++..+..
T Consensus 323 ~~~~~~a~~~~ 333 (338)
T 3ro2_A 323 MHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999987543
No 60
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.52 E-value=3.5e-15 Score=149.51 Aligned_cols=146 Identities=14% Similarity=0.103 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHH---cCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHH
Q 036340 296 VSWNSMIAGCETNKDYEGAIKLFIQMQV---EGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALIT 372 (579)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 372 (579)
.+|++||.+|++.|+.++|.++|.+|.+ .|+.||.. +|+.|+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdvv----------------------------------TYNtLI~ 173 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD----------------------------------MYNAVML 173 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHH----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHh----------------------------------HHHHHHH
Confidence 4678888888888888888888877653 24444444 4466777
Q ss_pred HhhhcCCHHHHHHHHHhcc---CCCCeeeHHHHHHHHHhcCCh-HHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHH
Q 036340 373 MYARCGAIVEARIIFEEMK---LLKNVVSWNAMIGGCASHGFA-TEALELFKSMRSFKVLPTYITFISVLSACAHAGLVE 448 (579)
Q Consensus 373 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 448 (579)
+|++.|++++|.++|++|. ..||+.+|+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+ +
T Consensus 174 Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~ 249 (1134)
T 3spa_A 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----A 249 (1134)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----H
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----H
Confidence 7778888888888888775 678888999999999999874 7899999999999999999999988754433 4
Q ss_pred HHHHHHHHhHHhhCCCCC------cchhHHHHHHhhccC
Q 036340 449 EGRQHFKSMVNEYGIEPR------IEHFASLVDIVGRHG 481 (579)
Q Consensus 449 ~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 481 (579)
..++..+++.. ++.|+ ..+...|.+.|.+.+
T Consensus 250 ~vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 250 TVLKAVHKVKP--TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHGGGCC--CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHHHhCc--ccCCCCCCcccccchHHHHHHHccCC
Confidence 55555555533 44443 344455666676655
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=8.6e-14 Score=134.13 Aligned_cols=291 Identities=13% Similarity=0.039 Sum_probs=164.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHccCCC--C-C----hhhHHHHHHHHHhCCCchHHHHHHHHHHHc----CCCCC-
Q 036340 262 PDTLTWNAMVSGYAQIGNLELALDFFKRMPQ--K-N----LVSWNSMIAGCETNKDYEGAIKLFIQMQVE----GEKPD- 329 (579)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~- 329 (579)
.....+...+..+...|++++|...|+++.+ | + ...+..+...+...|++++|...+++.... +..|.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444566677788888888888888887664 2 2 245777788888888888888888876542 11111
Q ss_pred hhhHHHHHHhccCCCchhhHHHHHHHHhhc---CCC---CchHHHHHHHHhhhcCC--------------------HHHH
Q 036340 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKT---VIP---DVPINNALITMYARCGA--------------------IVEA 383 (579)
Q Consensus 330 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~--------------------~~~A 383 (579)
..++..+...+...|+++.|...++..... ... ...++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 334445555666677777777666551111 111 13355566666666666 6666
Q ss_pred HHHHHhcc----CCC----CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCC-CCC----hhhHHHHHHHhcccCcHHHH
Q 036340 384 RIIFEEMK----LLK----NVVSWNAMIGGCASHGFATEALELFKSMRSFKV-LPT----YITFISVLSACAHAGLVEEG 450 (579)
Q Consensus 384 ~~~~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a 450 (579)
...+.+.. ..+ ...++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 66665432 011 122455566666666666666666666553210 011 11455556666666666666
Q ss_pred HHHHHHhHHhhCCCCC----cchhHHHHHHhhccCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCCHHHH
Q 036340 451 RQHFKSMVNEYGIEPR----IEHFASLVDIVGRHGRLEDAMDLIKGM----PFEPD----KAVWGALLGACRVHNNVELA 518 (579)
Q Consensus 451 ~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~A 518 (579)
...+++.+....-.++ ..++..++.++...|++++|...+++. +..++ ...+..+...+...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6666665532111111 334556666666666666666666554 11111 33555555666666666666
Q ss_pred HHHHHHHhhcCCCCCC------CchhhhhhhhhcCCchHH
Q 036340 519 QVAAEALMKVEPENST------PYVLLYNMYADVGRWDDA 552 (579)
Q Consensus 519 ~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A 552 (579)
...+++++++.+.... ++..++.++...|+...+
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 6666666666665532 344445555555554433
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.5e-14 Score=139.54 Aligned_cols=285 Identities=10% Similarity=-0.016 Sum_probs=206.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHhhcCC--CC-C----hhhHHHHHHHHHhcCCHHHHHHHHccCCC-----C----Ch
Q 036340 232 DTFSWNTMISGYIHVLDMEEASNLFVKMP--HP-D----TLTWNAMVSGYAQIGNLELALDFFKRMPQ-----K----NL 295 (579)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~ 295 (579)
....+......+...|++++|...|+++. .| + ..++..+...+...|++++|...+++... . ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 44566778888999999999999999887 33 3 25678888999999999999999887643 1 23
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHcCCC-CC----hhhHHHHHHhccCCCc--------------------hhhHH
Q 036340 296 VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK-PD----RHTFSSILSMSSGIVD--------------------LHLGM 350 (579)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 350 (579)
..+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ ++.|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 46778888999999999999999988653211 12 3366677778888899 89998
Q ss_pred HHHHH-Hh--hcC---CCCchHHHHHHHHhhhcCCHHHHHHHHHhcc----CCCC----eeeHHHHHHHHHhcCChHHHH
Q 036340 351 QIHQM-VT--KTV---IPDVPINNALITMYARCGAIVEARIIFEEMK----LLKN----VVSWNAMIGGCASHGFATEAL 416 (579)
Q Consensus 351 ~~~~~-~~--~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~A~ 416 (579)
..+.. .. ... +....++..+...|...|++++|...+++.. ..++ ..++..+...+...|++++|+
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 88876 22 111 1224467888899999999999999998764 1122 236788888999999999999
Q ss_pred HHHHHhHhCC----CCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC----cchhHHHHHHhhccCChHHHH
Q 036340 417 ELFKSMRSFK----VLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR----IEHFASLVDIVGRHGRLEDAM 487 (579)
Q Consensus 417 ~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 487 (579)
..+++..+.. ..+. ..++..+...+...|++++|...+++++....-.++ ..++..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999887431 1111 347778888999999999999999988754221222 457778899999999999999
Q ss_pred HHHHhC-------CCCC-CHHHHHHHHHHHhhcCCHH
Q 036340 488 DLIKGM-------PFEP-DKAVWGALLGACRVHNNVE 516 (579)
Q Consensus 488 ~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~ 516 (579)
..+++. +..+ ...++..+...+...|+..
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 998875 1111 2334455555555555443
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=2.1e-13 Score=115.14 Aligned_cols=169 Identities=11% Similarity=0.026 Sum_probs=144.4
Q ss_pred CCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHHHHH
Q 036340 362 PDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVL 438 (579)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 438 (579)
.++.+|..+...|...|++++|+..|++.. .+.++.++..+..+|.+.|++++|+..+.+.... .|+ ...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 456788999999999999999999999874 3446778999999999999999999999999864 444 44777778
Q ss_pred HHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHH
Q 036340 439 SACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVE 516 (579)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 516 (579)
..+...++++.+...+.+.... .+.+...+..++.++.+.|++++|+..+++. ...| +...|..++.++.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8899999999999999998754 2336778889999999999999999999987 3444 7789999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCC
Q 036340 517 LAQVAAEALMKVEPENST 534 (579)
Q Consensus 517 ~A~~~~~~~~~~~p~~~~ 534 (579)
+|+..|+++++++|+++.
T Consensus 159 ~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhCCccCHH
Confidence 999999999999998753
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.48 E-value=3e-11 Score=121.17 Aligned_cols=400 Identities=10% Similarity=0.042 Sum_probs=218.7
Q ss_pred CCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCC---HHHHHHHHccccccCCCCCCCc
Q 036340 120 RDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR---VEEARKLFDKIPVNCDRGEGNV 196 (579)
Q Consensus 120 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~ 196 (579)
.|..+|..++..+.+.+.++.+..+|+.++. ..|.....|...+..-.+.|+ ++.+..+|++.. ..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~---~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal--------~~ 132 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHD---RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL--------SK 132 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT--------CS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH--------Hh
Confidence 3677899999999999999999999999998 567778888888888888888 999999999997 21
Q ss_pred c-CCcchHHHHHHHHHHHhcCCH--------HHHHHHHHhcC------CC-ChhHHHHHHHHHHh---------cCChHH
Q 036340 197 R-FKRNIVSWNSMIMCYAKAGDV--------VSAREIFEQML------ER-DTFSWNTMISGYIH---------VLDMEE 251 (579)
Q Consensus 197 ~-~~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~~---------~~~~~~ 251 (579)
. .+|++..|...+....+.++. +...++|+..+ ++ +...|...+..... .++.+.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 1 138888999888877665543 33446776643 22 34567666655432 345677
Q ss_pred HHHHhhcCCC-CC---hhhHHHHHHHHHh-------------cCCHHHHHHHHcc-------CCC--CC-----------
Q 036340 252 ASNLFVKMPH-PD---TLTWNAMVSGYAQ-------------IGNLELALDFFKR-------MPQ--KN----------- 294 (579)
Q Consensus 252 a~~~~~~~~~-~~---~~~~~~l~~~~~~-------------~g~~~~A~~~~~~-------~~~--~~----------- 294 (579)
+..+|+.++. |- ..+|......-.. ..+++.|...+.+ +.+ |.
T Consensus 213 ~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p 292 (679)
T 4e6h_A 213 IRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLP 292 (679)
T ss_dssp HHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSC
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCC
Confidence 8888888872 22 1233222111111 0112223333322 111 00
Q ss_pred ---------hhhHHHHHHHHHhCC-------CchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHH-HHHHHHh
Q 036340 295 ---------LVSWNSMIAGCETNK-------DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM-QIHQMVT 357 (579)
Q Consensus 295 ---------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 357 (579)
...|...+..-...+ ..+.+..+|++.+..- .-....|...+..+...|+.+.|. .+++...
T Consensus 293 ~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi 371 (679)
T 4e6h_A 293 KPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ 371 (679)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 012333333222211 0122344555555432 123444444444444555555664 6666644
Q ss_pred hcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhccC------------CCC------------eeeHHHHHHHHHhcCChH
Q 036340 358 KTVIPDVPINNALITMYARCGAIVEARIIFEEMKL------------LKN------------VVSWNAMIGGCASHGFAT 413 (579)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~~~------------~~~~~~l~~~~~~~~~~~ 413 (579)
...|.+...+...+....+.|+++.|..+|+.+.. .|+ ...|...+....+.|+.+
T Consensus 372 ~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~ 451 (679)
T 4e6h_A 372 QCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA 451 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence 44555555555666666666666666666665431 021 123555555555566666
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHHhcc-cCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHh
Q 036340 414 EALELFKSMRSFKVLPTYITFISVLSACAH-AGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKG 492 (579)
Q Consensus 414 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 492 (579)
.|..+|.+..+.-..+....|...+..-.+ .++++.|..+|+..++.+ +.+...+..++......|+.+.|..+|++
T Consensus 452 ~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 452 ASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 666666666543001112222222221112 234666666666666542 22334444555555566666666666666
Q ss_pred C-CCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC
Q 036340 493 M-PFEP----DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533 (579)
Q Consensus 493 ~-~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 533 (579)
. ...| ....|...+..-.+.|+.+.+..+.+++.+..|+++
T Consensus 530 al~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 530 SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 5 2122 223555555555566666666666666666666653
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=1.3e-10 Score=116.49 Aligned_cols=415 Identities=12% Similarity=0.064 Sum_probs=275.3
Q ss_pred CCchhhHHHHHHHHHhcCChhhHHHHHccCCC---CCcchHHHHHHHHHhCCC---HHHHHHHHHHhccCCCCCCCchhh
Q 036340 88 ARNVVSWNAMISGFLQNGDVANAIEFFDRMPG---RDSASLSALVSGLIQNGE---LDEAARVLVKCGSRCDGGEDLVRA 161 (579)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~ 161 (579)
+.|..+|..++..+.+.++++.+..+|+++.. .....|...+..-.+.|+ ++.+..+|++++...+ .+|+...
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~-~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL-GNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS-CCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC-CCCCHHH
Confidence 45778999999999999999999999999875 345678888888888899 9999999999998521 2488889
Q ss_pred HHHHHHHHhhCCCH----HHHHHHHccccccCCCCCCCccC-Cc-chHHHHHHHHHHHh---------cCCHHHHHHHHH
Q 036340 162 YNTLIVGYGQRGRV----EEARKLFDKIPVNCDRGEGNVRF-KR-NIVSWNSMIMCYAK---------AGDVVSAREIFE 226 (579)
Q Consensus 162 ~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~~ 226 (579)
|..-+....+.++. +++......+-... ....|. .+ +...|...+..... .++++.+..+|+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErA---l~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ 218 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVV---VDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHH---HHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHH---HHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence 99988888887876 66777776665210 001244 44 45678888776542 345788999999
Q ss_pred hcCCC---C-hhHHH---HHHHHHHh----------cCChHHHHHHhhcC-------CC--------------C--C---
Q 036340 227 QMLER---D-TFSWN---TMISGYIH----------VLDMEEASNLFVKM-------PH--------------P--D--- 263 (579)
Q Consensus 227 ~~~~~---~-~~~~~---~l~~~~~~----------~~~~~~a~~~~~~~-------~~--------------~--~--- 263 (579)
+++.- + ...|. .+-..... ..+++.|...+.++ .. | +
T Consensus 219 raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 219 TLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp HHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred HHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 98762 1 12332 22222100 11233344444331 11 1 0
Q ss_pred ---hhhHHHHHHHHHhcC-------CHHHHHHHHccCCC---CChhhHHHHHHHHHhCCCchHHH-HHHHHHHHcCCCCC
Q 036340 264 ---TLTWNAMVSGYAQIG-------NLELALDFFKRMPQ---KNLVSWNSMIAGCETNKDYEGAI-KLFIQMQVEGEKPD 329 (579)
Q Consensus 264 ---~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~ 329 (579)
...|...+..-...+ ..+.+..+|++... .+...|...+..+...|+.++|. .+|++.... ++.+
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 123444443322222 12334556766654 35667888888888889999997 999999864 2334
Q ss_pred hhhHHHHHHhccCCCchhhHHHHHHH-Hhhc----------CCC-----------CchHHHHHHHHhhhcCCHHHHHHHH
Q 036340 330 RHTFSSILSMSSGIVDLHLGMQIHQM-VTKT----------VIP-----------DVPINNALITMYARCGAIVEARIIF 387 (579)
Q Consensus 330 ~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~----------~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~ 387 (579)
...+...+......|+++.|..+++. .... .+. ...+|...+....+.|+.+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44556667777788999999999998 3321 221 2346888888888899999999999
Q ss_pred HhccCC-C--CeeeHHHHHHHHHhc-CChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCC
Q 036340 388 EEMKLL-K--NVVSWNAMIGGCASH-GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGI 463 (579)
Q Consensus 388 ~~~~~~-~--~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 463 (579)
...... | ....|...+..-.+. ++.+.|..+|+...+. .+-+...+...+......|+.+.|..+|++.+... .
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~-~ 535 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI-S 535 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS-S
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-C
Confidence 987523 2 223343333333344 4589999999999875 23344455677777778899999999999998641 1
Q ss_pred CC--CcchhHHHHHHhhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 036340 464 EP--RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPDKAVWGALLGAC 509 (579)
Q Consensus 464 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~ 509 (579)
++ ....|...+..-.+.|+.+.+.++.+++ ...|+......++.-|
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHh
Confidence 11 3457777777778899999999999988 3345544555555444
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=1.6e-13 Score=132.50 Aligned_cols=259 Identities=14% Similarity=0.124 Sum_probs=192.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHhhcCC--CC-ch----hhHHHHHHHHHhcCChhhHHHHHccCCC---------CCcchH
Q 036340 62 TWNTVISGYAKTGEMEEALRLFNSMP--AR-NV----VSWNAMISGFLQNGDVANAIEFFDRMPG---------RDSASL 125 (579)
Q Consensus 62 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~ 125 (579)
.+..+...+...|++++|+..|+++. .| +. .++..+...+...|++++|+..+++... .....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 34566777888899999999988876 23 32 4677888888999999999988887643 123467
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhccCCC---CCCCchhhHHHHHHHHhhCCC-----------------HHHHHHHHccc
Q 036340 126 SALVSGLIQNGELDEAARVLVKCGSRCD---GGEDLVRAYNTLIVGYGQRGR-----------------VEEARKLFDKI 185 (579)
Q Consensus 126 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~ 185 (579)
..+...+...|++++|...++++..... ..+....++..++..+...|+ +++|.+.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 7788889999999999999988765310 123445678899999999999 99999998887
Q ss_pred cccCCCCCCCccC-CcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----C----hhHHHHHHHHHHhcCChHHHHHH
Q 036340 186 PVNCDRGEGNVRF-KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-----D----TFSWNTMISGYIHVLDMEEASNL 255 (579)
Q Consensus 186 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~ 255 (579)
..... ..+- +....++..+..++...|++++|...+++.++. + ...+..+...+...|++++|...
T Consensus 210 l~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 210 LKLMR----DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHH----HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHH----HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 52110 0011 223457888999999999999999999988552 2 23677888888999999999998
Q ss_pred hhcCC-----CCC----hhhHHHHHHHHHhcCCHHHHHHHHccCCC-----CC----hhhHHHHHHHHHhCCCchHHHHH
Q 036340 256 FVKMP-----HPD----TLTWNAMVSGYAQIGNLELALDFFKRMPQ-----KN----LVSWNSMIAGCETNKDYEGAIKL 317 (579)
Q Consensus 256 ~~~~~-----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~ 317 (579)
+++.. ..+ ..++..+...+...|++++|...+++..+ .+ ..++..+...|...|++++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 88776 111 45677788888888888888888887654 12 23667778888888888888888
Q ss_pred HHHHHHc
Q 036340 318 FIQMQVE 324 (579)
Q Consensus 318 ~~~~~~~ 324 (579)
|++..+.
T Consensus 366 ~~~al~~ 372 (411)
T 4a1s_A 366 AEQHLQL 372 (411)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=1.7e-13 Score=139.13 Aligned_cols=162 Identities=17% Similarity=0.262 Sum_probs=130.2
Q ss_pred CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh-hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHH
Q 036340 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY-ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFAS 472 (579)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 472 (579)
+..+|+.+...+.+.|++++|++.|++.++ +.|+. .++..+..+|.+.|++++|+..|+++++. .| +...+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 345677788888888888888888888875 35654 47788888888888888888888888753 45 4677888
Q ss_pred HHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCch
Q 036340 473 LVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550 (579)
Q Consensus 473 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 550 (579)
++.+|...|++++|++.+++. ...| +...|..++.++...|++++|+..|+++++++|+++.++..|+.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888888888888888876 4445 57788888888888999999999999999999998888999999999999999
Q ss_pred HHHHHHHHHHh
Q 036340 551 DANEVRLLMKS 561 (579)
Q Consensus 551 ~A~~~~~~~~~ 561 (579)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887653
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=5e-13 Score=125.00 Aligned_cols=270 Identities=14% Similarity=0.051 Sum_probs=164.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCC----hhhHHHHHHHHHhcCC
Q 036340 204 SWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPD----TLTWNAMVSGYAQIGN 279 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 279 (579)
.+......+...|++++|...|+++++.++ .+ ...+..+...+...|+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~~~l~~~~~~~g~ 58 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGT----------------------------EDLKTLSAIYSQLGNAYFYLHD 58 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----------------------------SCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCc----------------------------ccHHHHHHHHHHHHHHHHHcCC
Confidence 444555666666777777666666543211 11 1234445555555555
Q ss_pred HHHHHHHHccCCC-----C----ChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCC-CChhhHHHHHHhccCCCchhhH
Q 036340 280 LELALDFFKRMPQ-----K----NLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEK-PDRHTFSSILSMSSGIVDLHLG 349 (579)
Q Consensus 280 ~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a 349 (579)
+++|...+++..+ + ....+..+...+...|++++|...+++..+.... ++...
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------- 121 (338)
T 3ro2_A 59 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG----------------- 121 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-----------------
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH-----------------
Confidence 5555555554332 1 1335666777777888888888887776542111 11100
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHhhhcCC--------------------HHHHHHHHHhcc-------CCC-CeeeHHH
Q 036340 350 MQIHQMVTKTVIPDVPINNALITMYARCGA--------------------IVEARIIFEEMK-------LLK-NVVSWNA 401 (579)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~-------~~~-~~~~~~~ 401 (579)
...++..+...+...|+ +++|...+++.. ..+ ....+..
T Consensus 122 -------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (338)
T 3ro2_A 122 -------------EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGN 188 (338)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 01123344455555555 566665555432 011 1235677
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCC----CCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC----cchhHH
Q 036340 402 MIGGCASHGFATEALELFKSMRSFK----VLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR----IEHFAS 472 (579)
Q Consensus 402 l~~~~~~~~~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 472 (579)
+...+...|++++|+..+++..+.. ..+. ..++..+...+...|++++|...+++.+....-.++ ..++..
T Consensus 189 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 268 (338)
T 3ro2_A 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 268 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 7778888888888888888876421 1111 226777778888899999999988887653211111 456778
Q ss_pred HHHHhhccCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCC
Q 036340 473 LVDIVGRHGRLEDAMDLIKGM-------PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531 (579)
Q Consensus 473 l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 531 (579)
++.++...|++++|...+++. +..+ ...++..+...+...|++++|...+++++++.+.
T Consensus 269 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 888899999999999988876 1111 2446777888899999999999999999987765
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=7.6e-13 Score=126.22 Aligned_cols=163 Identities=11% Similarity=0.051 Sum_probs=92.2
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhcc----CCCC----eeeHHHHHHHHHhcCChHHHHHHHHHhHhC----CCCCC-hh
Q 036340 366 INNALITMYARCGAIVEARIIFEEMK----LLKN----VVSWNAMIGGCASHGFATEALELFKSMRSF----KVLPT-YI 432 (579)
Q Consensus 366 ~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~ 432 (579)
++..+...|...|++++|...|++.. ..++ ..++..++.+|...|++++|+..+++..+. +..|+ ..
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 44556666666777777766666542 1111 124666666777777777777777666541 22133 23
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCC---CCCcchhHHHHHHhhccCC---hHHHHHHHHhCCCCCC-HHHHHHH
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGI---EPRIEHFASLVDIVGRHGR---LEDAMDLIKGMPFEPD-KAVWGAL 505 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l 505 (579)
++..+...+...|++++|...+++.+.-..- +.....+..+...+...|+ +++|+.++++.+..|+ ...+..+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 345 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 5666666777777777777777666542111 1111223456666666666 6666666666643332 2344555
Q ss_pred HHHHhhcCCHHHHHHHHHHHhhc
Q 036340 506 LGACRVHNNVELAQVAAEALMKV 528 (579)
Q Consensus 506 ~~~~~~~~~~~~A~~~~~~~~~~ 528 (579)
+..+...|++++|...+++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 56666666666666666666543
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=2.3e-12 Score=122.96 Aligned_cols=220 Identities=12% Similarity=0.038 Sum_probs=138.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC-----C----hhHHHHHHHHHHhcCChHHHHHHhhcCC-----CCC-----hhhHH
Q 036340 208 MIMCYAKAGDVVSAREIFEQMLER-----D----TFSWNTMISGYIHVLDMEEASNLFVKMP-----HPD-----TLTWN 268 (579)
Q Consensus 208 l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~-----~~~~~ 268 (579)
....+...|++++|...|++.++. + ..++..+...+...|++++|+..+++.. .++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 666778889999999999887552 2 2456667777777777777777776654 111 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCC-----CCh----hhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHh
Q 036340 269 AMVSGYAQIGNLELALDFFKRMPQ-----KNL----VSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSM 339 (579)
Q Consensus 269 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (579)
.++.+|...|++++|...|++..+ ++. .++..+..+|...|++++|+..+++..+...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~------------- 255 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE------------- 255 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------
Confidence 556666666666666666655442 111 2455555566666666666666655543100
Q ss_pred ccCCCchhhHHHHHHHHhhcC-CCCchHHHHHHHHhhhcCCHHHHHHHHHhcc----C--CCC-eeeHHHHHHHHHhcCC
Q 036340 340 SSGIVDLHLGMQIHQMVTKTV-IPDVPINNALITMYARCGAIVEARIIFEEMK----L--LKN-VVSWNAMIGGCASHGF 411 (579)
Q Consensus 340 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~--~~~-~~~~~~l~~~~~~~~~ 411 (579)
..+. +....++..++..|...|++++|...+++.. . .|. ...+..+...+...|+
T Consensus 256 -----------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 256 -----------------ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp -----------------HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred -----------------hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 0011 2234455667777888888888887777653 0 111 1225667777777888
Q ss_pred ---hHHHHHHHHHhHhCCCCCCh-hhHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 036340 412 ---ATEALELFKSMRSFKVLPTY-ITFISVLSACAHAGLVEEGRQHFKSMVNE 460 (579)
Q Consensus 412 ---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 460 (579)
.++|+.++++. +..|+. ..+..+...|...|++++|...+++...-
T Consensus 319 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 319 EEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777777766 333433 36777888889999999999998887653
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=1.2e-12 Score=110.66 Aligned_cols=161 Identities=12% Similarity=0.021 Sum_probs=87.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhc
Q 036340 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR 479 (579)
Q Consensus 400 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 479 (579)
..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..++..+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 334444445555555555555544321 112334444555555555555555555555432 12234444555555555
Q ss_pred cCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHH
Q 036340 480 HGRLEDAMDLIKGM-P-FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRL 557 (579)
Q Consensus 480 ~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 557 (579)
.|++++|...++++ . .+.+...+..++..+...|++++|...++++++..|.++.++..++.++...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555554 1 223455556666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhCC
Q 036340 558 LMKSNN 563 (579)
Q Consensus 558 ~~~~~~ 563 (579)
++.+..
T Consensus 169 ~~~~~~ 174 (186)
T 3as5_A 169 KANELD 174 (186)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 665443
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=8.9e-12 Score=114.64 Aligned_cols=220 Identities=8% Similarity=0.006 Sum_probs=157.8
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHhcc-------CCCch-------hhHHHHHHHHhh-cCCCCchHHHHHHHHhhh
Q 036340 312 EGAIKLFIQMQVEGEKPDRHTFSSILSMSS-------GIVDL-------HLGMQIHQMVTK-TVIPDVPINNALITMYAR 376 (579)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 376 (579)
++|...|++.+... +.+...|......+. ..|+. +.|..+++.... -.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888898888753 234556666665553 34665 788888888555 345566788888888888
Q ss_pred cCCHHHHHHHHHhcc-CCCC-ee-eHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHh-cccCcHHHHHH
Q 036340 377 CGAIVEARIIFEEMK-LLKN-VV-SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSAC-AHAGLVEEGRQ 452 (579)
Q Consensus 377 ~~~~~~A~~~~~~~~-~~~~-~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~ 452 (579)
.|++++|..+|++.. ..|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|...+... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888764 3443 33 68888888888888888888888888643 22333444333322 23688888888
Q ss_pred HHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 036340 453 HFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-P---FEP--DKAVWGALLGACRVHNNVELAQVAAEALM 526 (579)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 526 (579)
+|+++++.. +.+...+..++..+.+.|++++|..+|+++ . .+| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887652 235677788888888888888888888877 2 244 35577888888888888888888888888
Q ss_pred hcCCCCCCC
Q 036340 527 KVEPENSTP 535 (579)
Q Consensus 527 ~~~p~~~~~ 535 (579)
+..|+++..
T Consensus 269 ~~~p~~~~~ 277 (308)
T 2ond_A 269 TAFREEYEG 277 (308)
T ss_dssp HHTTTTTSS
T ss_pred HHccccccc
Confidence 888886643
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=9.5e-11 Score=107.72 Aligned_cols=213 Identities=13% Similarity=0.047 Sum_probs=133.5
Q ss_pred hhHHHHHHHHhhcCCCCchHHHHHHHHhhh-------cCCH-------HHHHHHHHhcc--CCCC-eeeHHHHHHHHHhc
Q 036340 347 HLGMQIHQMVTKTVIPDVPINNALITMYAR-------CGAI-------VEARIIFEEMK--LLKN-VVSWNAMIGGCASH 409 (579)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~--~~~~-~~~~~~l~~~~~~~ 409 (579)
+.|...++......|.++.+|..++..+.. .|++ ++|..+|++.. ..|+ ...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 455556666444556666667666666542 3664 67777777654 2343 34677777777777
Q ss_pred CChHHHHHHHHHhHhCCCCCCh-h-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhh-ccCChHH
Q 036340 410 GFATEALELFKSMRSFKVLPTY-I-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVG-RHGRLED 485 (579)
Q Consensus 410 ~~~~~A~~~~~~~~~~~~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~ 485 (579)
|++++|..+|+++.+ +.|+. . .|..++..+.+.|++++|..+|+++++. .| +...|...+.... ..|++++
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 777777777777774 34543 2 5666666777777777777777777642 23 3344433333221 2577777
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhc---CCC-CCCCchhhhhhhhhcCCchHHHHHHHHH
Q 036340 486 AMDLIKGM-PF-EPDKAVWGALLGACRVHNNVELAQVAAEALMKV---EPE-NSTPYVLLYNMYADVGRWDDANEVRLLM 559 (579)
Q Consensus 486 A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (579)
|..+|+++ .. +.+...|..++..+...|++++|..+|+++++. .|+ ....|..++..+...|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777766 22 225667777777777777777777777777764 332 3445666677777777777777777777
Q ss_pred HhCCC
Q 036340 560 KSNNI 564 (579)
Q Consensus 560 ~~~~~ 564 (579)
.+..+
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 65544
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.38 E-value=5.2e-12 Score=110.67 Aligned_cols=200 Identities=10% Similarity=0.036 Sum_probs=86.3
Q ss_pred hhHHHHHHhccCCCchhhHHHHHHHHhhcCC-CCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCC-CeeeHHHHHHHHH
Q 036340 331 HTFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMK-LLK-NVVSWNAMIGGCA 407 (579)
Q Consensus 331 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 407 (579)
..+......+...|+++.|...++......+ ++...+..+..++...|++++|...|++.. ..| +...|..+..++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 3444444444455555555555554222222 344444444445555555555555544432 122 2334444444455
Q ss_pred hcCChHHHHHHHHHhHhCCCCCC-h-------hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC---cchhHHHHHH
Q 036340 408 SHGFATEALELFKSMRSFKVLPT-Y-------ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR---IEHFASLVDI 476 (579)
Q Consensus 408 ~~~~~~~A~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~ 476 (579)
..|++++|+..+++..+. .|+ . ..|..+...+...|++++|+..|+++++ ..|+ ...+..++.+
T Consensus 88 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHHH
Confidence 555555555555544432 222 1 1233344444444555555555544442 2232 2334444444
Q ss_pred hhccCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhh
Q 036340 477 VGRHGRL--EDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542 (579)
Q Consensus 477 ~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 542 (579)
|...|+. ++|..+ . ..+...+.... ....+.+++|+..++++++++|+++.+...+..+
T Consensus 163 ~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 163 FYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 4333322 111110 0 11122222111 1223344777777777777777776555544433
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=1.6e-12 Score=126.95 Aligned_cols=203 Identities=14% Similarity=-0.002 Sum_probs=164.9
Q ss_pred hHHHHHHHhhCC---CCCcchHHHHHHHHHccCCH-HHHHHHhhcCC---CCchhhHHHHHHHHHhcCChhhHHHHHccC
Q 036340 45 LEEARYLFDIMP---ERDCVTWNTVISGYAKTGEM-EEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRM 117 (579)
Q Consensus 45 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 117 (579)
+++++..+++.. +.+...+..+...+...|++ ++|+..|++.. +.+..+|..+..+|...|++++|++.|++.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666665544 34667889999999999999 99999999887 445779999999999999999999999997
Q ss_pred CC--CCcchHHHHHHHHHhC---------CCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhC--------CCHHHH
Q 036340 118 PG--RDSASLSALVSGLIQN---------GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQR--------GRVEEA 178 (579)
Q Consensus 118 ~~--~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A 178 (579)
.+ |+...+..+...+... |++++|+..++++++ ..|.+..+|..++.++... |++++|
T Consensus 164 l~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 164 LTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 65 5567788888999999 999999999999998 4567788999999999998 999999
Q ss_pred HHHHccccccCCCCCCCccCC---cchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHH
Q 036340 179 RKLFDKIPVNCDRGEGNVRFK---RNIVSWNSMIMCYAKAGDVVSAREIFEQMLER---DTFSWNTMISGYIHVLDMEEA 252 (579)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 252 (579)
++.|+++... . + .+...|..+..++...|++++|.+.|++.++. +...+..+..++...|++++|
T Consensus 241 ~~~~~~al~~--------~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 241 LSAYAQAEKV--------D-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHH--------C-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--------C-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999721 1 2 47888999999999999999999999988552 344556666666666666666
Q ss_pred HHHhhcC
Q 036340 253 SNLFVKM 259 (579)
Q Consensus 253 ~~~~~~~ 259 (579)
+..+.++
T Consensus 312 i~~~~~~ 318 (474)
T 4abn_A 312 LESKGKT 318 (474)
T ss_dssp HHHTTTC
T ss_pred HHHhccc
Confidence 6655544
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=2.8e-12 Score=112.39 Aligned_cols=192 Identities=10% Similarity=-0.073 Sum_probs=115.1
Q ss_pred CCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CC-CCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh-hHHHH
Q 036340 362 PDVPINNALITMYARCGAIVEARIIFEEMK--LL-KNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI-TFISV 437 (579)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l 437 (579)
.++..+...+..+...|++++|...|++.. .+ ++...+..+..++...|++++|+..+++..+ ..|+.. .+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHH
Confidence 345566666777777777777777776653 22 4555555566667777777777777777664 345433 66666
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhhCCCC-Cc-------chhHHHHHHhhccCChHHHHHHHHhC-CCCCC---HHHHHHH
Q 036340 438 LSACAHAGLVEEGRQHFKSMVNEYGIEP-RI-------EHFASLVDIVGRHGRLEDAMDLIKGM-PFEPD---KAVWGAL 505 (579)
Q Consensus 438 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l 505 (579)
..++...|++++|...+++.++. .| +. ..+..++.++...|++++|+..++++ ...|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 66777777777777777766643 23 22 34555666666666666666666665 34443 3455555
Q ss_pred HHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCC
Q 036340 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565 (579)
Q Consensus 506 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (579)
..++... +...++++..+.+.++..+ ........+.+++|...+++..+..+.
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHH-----HHHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 5555332 3344455555555443222 223344455669999999999876643
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=121.19 Aligned_cols=232 Identities=15% Similarity=0.150 Sum_probs=141.5
Q ss_pred hhhHHHHHHhccCCCchhhHHHHHHHHhh--------cCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-C--------
Q 036340 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTK--------TVIPDVPINNALITMYARCGAIVEARIIFEEMK-L-------- 392 (579)
Q Consensus 330 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-------- 392 (579)
..++..+...+...|+++.|..+++.... ..+....++..+...|...|++++|...+++.. .
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555666677777888888877776222 233345566777777777888888777777653 1
Q ss_pred CC-CeeeHHHHHHHHHhcCChHHHHHHHHHhHhC------CCCCCh-hhHHHHHHHhcccCcHHHHHHHHHHhHHhh---
Q 036340 393 LK-NVVSWNAMIGGCASHGFATEALELFKSMRSF------KVLPTY-ITFISVLSACAHAGLVEEGRQHFKSMVNEY--- 461 (579)
Q Consensus 393 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 461 (579)
.| ....+..+...+...|++++|+..++++.+. +..|.. .++..+...+...|++++|..++++++...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 11 2345667777777778888888887777653 222322 356667777777788888888777775431
Q ss_pred --CCCC-CcchhHHHHHHhhccCChHHHHHHHHhCC----------CCCC-HHHH------HHHHHHHhhcCCHHHHHHH
Q 036340 462 --GIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGMP----------FEPD-KAVW------GALLGACRVHNNVELAQVA 521 (579)
Q Consensus 462 --~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-~~~~------~~l~~~~~~~~~~~~A~~~ 521 (579)
+..| ....+..++.++...|++++|...++++- ..+. ...+ ......+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1122 24456677777777888888777776651 1111 1111 1122223344555666666
Q ss_pred HHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHh
Q 036340 522 AEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561 (579)
Q Consensus 522 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (579)
++++....|..+.++..++.+|...|++++|.+++++..+
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777667788888899999999999999999999998865
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=120.52 Aligned_cols=241 Identities=16% Similarity=0.148 Sum_probs=146.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHccCCC--------CC---hhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhh
Q 036340 264 TLTWNAMVSGYAQIGNLELALDFFKRMPQ--------KN---LVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHT 332 (579)
Q Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 332 (579)
..++..++..+...|++++|..+|+++.+ .+ ...+..+...|...|++++|...+++........
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---- 102 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT---- 102 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH----
Confidence 34566666777777777777777766543 11 2345566666667777777777766654321000
Q ss_pred HHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-C------C--C-CeeeHHHH
Q 036340 333 FSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-L------L--K-NVVSWNAM 402 (579)
Q Consensus 333 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~------~--~-~~~~~~~l 402 (579)
.....+....++..+...|...|++++|...+++.. . . | ....+..+
T Consensus 103 -----------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 103 -----------------------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp -----------------------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -----------------------hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 000011223455667777777888888877777653 1 1 1 23457778
Q ss_pred HHHHHhcCChHHHHHHHHHhHhC------CCCCCh-hhHHHHHHHhcccCcHHHHHHHHHHhHHhh------CCCCC-cc
Q 036340 403 IGGCASHGFATEALELFKSMRSF------KVLPTY-ITFISVLSACAHAGLVEEGRQHFKSMVNEY------GIEPR-IE 468 (579)
Q Consensus 403 ~~~~~~~~~~~~A~~~~~~~~~~------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-~~ 468 (579)
...+...|++++|+++++++.+. +..|.. .++..+...+...|++++|...+++++... ...+. ..
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 88888899999999999888754 223433 367788888999999999999998887531 11222 22
Q ss_pred hhH------HHHHHhhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCC
Q 036340 469 HFA------SLVDIVGRHGRLEDAMDLIKGMP-FEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531 (579)
Q Consensus 469 ~~~------~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 531 (579)
.+. .+...+...+.+.+|...++... ..| +..++..++.++...|++++|...+++++++.|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 222 22223344555666666666653 334 5567888999999999999999999999988775
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=2e-10 Score=109.01 Aligned_cols=287 Identities=10% Similarity=-0.016 Sum_probs=160.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC----CChh----hHHHHHHHHHhCCCchHHHHHHHHHHHcCCC-CCh----hhH
Q 036340 267 WNAMVSGYAQIGNLELALDFFKRMPQ----KNLV----SWNSMIAGCETNKDYEGAIKLFIQMQVEGEK-PDR----HTF 333 (579)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~ 333 (579)
.......+...|++++|...+++... .+.. .++.+...+...|++++|...+++....... ++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34445566778888888888776432 2221 4556667777888888888888887653211 111 123
Q ss_pred HHHHHhccCCCchhhHHHHHHH-Hhh----cCC--C-CchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCC------Ceee
Q 036340 334 SSILSMSSGIVDLHLGMQIHQM-VTK----TVI--P-DVPINNALITMYARCGAIVEARIIFEEMK-LLK------NVVS 398 (579)
Q Consensus 334 ~~l~~~~~~~~~~~~a~~~~~~-~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~------~~~~ 398 (579)
..+...+...|+++.|...++. ... +.+ | ....+..+...+...|++++|...+++.. ..+ ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 4445566677777777777665 211 111 1 22344556666777777777777776542 111 1123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh-hhHH-----HHHHHhcccCcHHHHHHHHHHhHHhhCCCCC-----c
Q 036340 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTY-ITFI-----SVLSACAHAGLVEEGRQHFKSMVNEYGIEPR-----I 467 (579)
Q Consensus 399 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~ 467 (579)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++..... .|. .
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~ 253 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP---EFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC---CCTTCGGGH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC---CCCcchhhH
Confidence 555666667777777777777766543212111 1111 1222355677777777777666532 121 1
Q ss_pred chhHHHHHHhhccCChHHHHHHHHhC-------CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhh
Q 036340 468 EHFASLVDIVGRHGRLEDAMDLIKGM-------PFEPDK-AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539 (579)
Q Consensus 468 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 539 (579)
..+..++.++...|++++|...+++. +..++. ..+..+..++...|+.++|...+++++...+.. ..
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~-----g~ 328 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT-----GF 328 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----CC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc-----cH
Confidence 13345666677777777777776654 111111 244445566666777777777777777766652 22
Q ss_pred hhhhhhcCCchHHHHHHHHHHhCC
Q 036340 540 YNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
...+...| +....+++.+....
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHHHTT
T ss_pred HHHHHHcc--HHHHHHHHHHHhCC
Confidence 33444445 45566666665444
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=9.1e-11 Score=111.51 Aligned_cols=301 Identities=11% Similarity=0.028 Sum_probs=173.9
Q ss_pred CCcchHHHHHHHHHH--HhcCCHHHHHHHHHhcCC------CC--hhHHHHHHHH--HHhcCChHHHH---------HHh
Q 036340 198 FKRNIVSWNSMIMCY--AKAGDVVSAREIFEQMLE------RD--TFSWNTMISG--YIHVLDMEEAS---------NLF 256 (579)
Q Consensus 198 ~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~------~~--~~~~~~l~~~--~~~~~~~~~a~---------~~~ 256 (579)
+.|+..+-+.+-..| .+.+++++|..+++++.+ .| ...|..++.. ....+..+... ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 356666666666666 789999999999987632 22 2223333321 11111111111 222
Q ss_pred hcCC---CC-Ch----hhHHHHHHHHHhcCCHHHHHHHHccCCC-----CC----hhhHHHHHHHHHhCCCchHHHHHHH
Q 036340 257 VKMP---HP-DT----LTWNAMVSGYAQIGNLELALDFFKRMPQ-----KN----LVSWNSMIAGCETNKDYEGAIKLFI 319 (579)
Q Consensus 257 ~~~~---~~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (579)
+.+. .+ +. ..+...+..+...|++++|...|++..+ ++ ..++..+...|...|+++.|+..++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 2221 11 00 0122233445556666666666655443 11 2245555566666666666666666
Q ss_pred HHHHcCCC-CChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc----CCC
Q 036340 320 QMQVEGEK-PDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK----LLK 394 (579)
Q Consensus 320 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~ 394 (579)
+..+.... ++.. +....++..++..|...|++++|...|.+.. ..+
T Consensus 166 ~al~~~~~~~~~~-----------------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 166 QALDIYQNHPLYS-----------------------------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHTSTTCH-----------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCch-----------------------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 55432100 0000 0012345667788888888888888877653 111
Q ss_pred C----eeeHHHHHHHHHhcCChHHHHHHHHHhHhCC---CCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC
Q 036340 395 N----VVSWNAMIGGCASHGFATEALELFKSMRSFK---VLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466 (579)
Q Consensus 395 ~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 466 (579)
+ ..++..+..+|...|++++|++.+++..+.. ..|. ..++..+...+...|++++|...+++.+....-.++
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 1 2356778888888888888888888877510 1232 447777888888889999999888888764222122
Q ss_pred ---cchhHHHHHHhhccCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhh
Q 036340 467 ---IEHFASLVDIVGRHGR---LEDAMDLIKGMPFEPD-KAVWGALLGACRVHNNVELAQVAAEALMK 527 (579)
Q Consensus 467 ---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 527 (579)
...+..+...+...|+ +.+|+.++++....|+ ...+..++..+...|++++|...|+++++
T Consensus 297 ~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2334556666777777 7788888877654333 33555666777778888888888877764
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=3.2e-11 Score=101.65 Aligned_cols=169 Identities=11% Similarity=-0.034 Sum_probs=142.3
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhc
Q 036340 365 PINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442 (579)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 442 (579)
..+..++..+...|++++|...++++. .+.+...+..++..+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 455677888999999999999999875 23356678889999999999999999999998642 334568888889999
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHhhcCCHHHHHH
Q 036340 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-P-FEPDKAVWGALLGACRVHNNVELAQV 520 (579)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 520 (579)
..|++++|.+.++++... .+.+...+..++.++...|++++|...++++ . .+.+...+..++..+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999864 2346778888999999999999999999987 2 23467889999999999999999999
Q ss_pred HHHHHhhcCCCCCCCc
Q 036340 521 AAEALMKVEPENSTPY 536 (579)
Q Consensus 521 ~~~~~~~~~p~~~~~~ 536 (579)
.++++++..|+++...
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 166 HFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCchhhH
Confidence 9999999999876543
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=7.3e-12 Score=119.09 Aligned_cols=196 Identities=9% Similarity=0.016 Sum_probs=146.2
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhcc----CCCC-----eeeHHHHHHHHHhcCChHHHHHHHHHhHhC----CCCCC-
Q 036340 365 PINNALITMYARCGAIVEARIIFEEMK----LLKN-----VVSWNAMIGGCASHGFATEALELFKSMRSF----KVLPT- 430 (579)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~- 430 (579)
.++..++..|...|+++.|...+.+.. ..++ ..+++.+..+|...|++++|++.+++..+. +..+.
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 456778888889999999888887653 1122 346788999999999999999999987753 11111
Q ss_pred hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhC--CCC-CcchhHHHHHHhhccCChHHHHHHHHhC----CC--CCC-HH
Q 036340 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYG--IEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM----PF--EPD-KA 500 (579)
Q Consensus 431 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~~~-~~ 500 (579)
..++..+..+|...|++++|...+++.+.-.. ..| ...++..++.++.+.|++++|...+++. .. .|. ..
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 23677888899999999999999998876211 123 3667888999999999999999999876 11 222 33
Q ss_pred HHHHHHHHHhhcCC---HHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHh
Q 036340 501 VWGALLGACRVHNN---VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561 (579)
Q Consensus 501 ~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (579)
.+..+...+...++ +.+|+..+++. ...|.....+..++.+|...|++++|..++++..+
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555566777788 78888887763 22333345677899999999999999999998753
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=1.3e-11 Score=125.31 Aligned_cols=166 Identities=14% Similarity=0.169 Sum_probs=144.1
Q ss_pred CCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCC-CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh-hhHHHH
Q 036340 361 IPDVPINNALITMYARCGAIVEARIIFEEMK-LLK-NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY-ITFISV 437 (579)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l 437 (579)
|.+...++.+...|.+.|++++|++.|++.. ..| +..+|..+..+|.+.|++++|+..|++.++ +.|+. ..|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 3456788999999999999999999999874 344 567899999999999999999999999986 46764 489999
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC
Q 036340 438 LSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNN 514 (579)
Q Consensus 438 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 514 (579)
..++...|++++|++.|+++++. .| +...+..++.+|...|++++|+..|+++ ...| +...+..++.++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999999854 55 5788999999999999999999999987 4455 67799999999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 036340 515 VELAQVAAEALMKVEPE 531 (579)
Q Consensus 515 ~~~A~~~~~~~~~~~p~ 531 (579)
+++|.+.+++++++.|+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 99999999999876543
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=2.5e-12 Score=103.84 Aligned_cols=142 Identities=9% Similarity=-0.019 Sum_probs=97.5
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhc
Q 036340 402 MIGGCASHGFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGR 479 (579)
Q Consensus 402 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 479 (579)
|+..+...|++++|+..++.... ..|+.. .+..+...|...|++++|++.|+++++. .| +...+..++.+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 34445556777777777777663 344433 5666777777788888888888777643 44 56677777777888
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHH-HHHHhhcCCCCCCCchhhhhhhhhcCC
Q 036340 480 HGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVA-AEALMKVEPENSTPYVLLYNMYADVGR 548 (579)
Q Consensus 480 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 548 (579)
.|++++|+..|++. ...| ++..+..++..+.+.|++++|... ++++++++|+++.++.....++...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888777776 3444 566777777778788877665544 578888888888777777777777664
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.23 E-value=2.8e-10 Score=108.04 Aligned_cols=289 Identities=11% Similarity=0.020 Sum_probs=184.1
Q ss_pred HHHHHHHHhcCChHHHHHHhhcCC---CCC-h----hhHHHHHHHHHhcCCHHHHHHHHccCCC-----CCh----hhHH
Q 036340 237 NTMISGYIHVLDMEEASNLFVKMP---HPD-T----LTWNAMVSGYAQIGNLELALDFFKRMPQ-----KNL----VSWN 299 (579)
Q Consensus 237 ~~l~~~~~~~~~~~~a~~~~~~~~---~~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~ 299 (579)
......+...|++++|...+++.. +++ . .++..+...+...|++++|...+++... .+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556677889999988887754 222 2 1456667778888999998888887654 222 2356
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHc----CCC--CC-hhhHHHHHHhccCCCchhhHHHHHHH-HhhcCC--C--CchHH
Q 036340 300 SMIAGCETNKDYEGAIKLFIQMQVE----GEK--PD-RHTFSSILSMSSGIVDLHLGMQIHQM-VTKTVI--P--DVPIN 367 (579)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~--~--~~~~~ 367 (579)
.+...+...|++++|...+++.... +.. |. ...+..+...+...|+++.|...++. ...... + ....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6777888889999999988887643 221 22 23445566677888999999888887 322111 1 23456
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhcc---CCCCe-eeHHH-----HHHHHHhcCChHHHHHHHHHhHhCCCCCC---hhhHH
Q 036340 368 NALITMYARCGAIVEARIIFEEMK---LLKNV-VSWNA-----MIGGCASHGFATEALELFKSMRSFKVLPT---YITFI 435 (579)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~-~~~~~-----l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~ 435 (579)
..+...+...|++++|...+++.. ..++. ..+.. .+..+...|++++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 677888888899999988888763 12221 12222 23346688999999999888775332211 12456
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHhh---CCCCCc-chhHHHHHHhhccCChHHHHHHHHhCC-CCCCHHHHHHHHHHHh
Q 036340 436 SVLSACAHAGLVEEGRQHFKSMVNEY---GIEPRI-EHFASLVDIVGRHGRLEDAMDLIKGMP-FEPDKAVWGALLGACR 510 (579)
Q Consensus 436 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~ 510 (579)
.+...+...|++++|...++.+.... +..++. ..+..++.++...|+.++|...+++.- ..+. ......+.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~----~g~~~~~~ 333 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR----TGFISHFV 333 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HCCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc----ccHHHHHH
Confidence 66778888899999998888775432 111122 356667788888899999988887651 1000 00112233
Q ss_pred hcCCHHHHHHHHHHHhhcCCC
Q 036340 511 VHNNVELAQVAAEALMKVEPE 531 (579)
Q Consensus 511 ~~~~~~~A~~~~~~~~~~~p~ 531 (579)
..| +....+++++....|.
T Consensus 334 ~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 334 IEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp TTH--HHHHHHHHHHHHTTCS
T ss_pred Hcc--HHHHHHHHHHHhCCCC
Confidence 333 5666777777777765
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=5.1e-11 Score=108.14 Aligned_cols=221 Identities=17% Similarity=0.162 Sum_probs=151.5
Q ss_pred cCCCchhhHHHHHHH-Hh---h----cCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-C--------CC-CeeeHHHH
Q 036340 341 SGIVDLHLGMQIHQM-VT---K----TVIPDVPINNALITMYARCGAIVEARIIFEEMK-L--------LK-NVVSWNAM 402 (579)
Q Consensus 341 ~~~~~~~~a~~~~~~-~~---~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~--------~~-~~~~~~~l 402 (579)
...|+++.|..+++. .. . ..+....++..+...|...|++++|...+++.. . .| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456788888887776 22 1 223356678889999999999999999998764 1 11 24468888
Q ss_pred HHHHHhcCChHHHHHHHHHhHhC------CCCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhh-----CCCC-Ccch
Q 036340 403 IGGCASHGFATEALELFKSMRSF------KVLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEY-----GIEP-RIEH 469 (579)
Q Consensus 403 ~~~~~~~~~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~ 469 (579)
...+...|++++|+..+++.... .-.|+ ..++..+...+...|++++|..+++++++.. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999998754 11233 3478888889999999999999999887541 1122 3567
Q ss_pred hHHHHHHhhccCChHHHHHHHHhCC----------CCC-CHHHHHHHHHHHhhcC------CHHHHHHHHHHHhhcCCCC
Q 036340 470 FASLVDIVGRHGRLEDAMDLIKGMP----------FEP-DKAVWGALLGACRVHN------NVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 470 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~-~~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~p~~ 532 (579)
+..++.++...|++++|...++++- ..+ ....+..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7888999999999999999987761 122 2233444333333222 2334444444433444555
Q ss_pred CCCchhhhhhhhhcCCchHHHHHHHHHHh
Q 036340 533 STPYVLLYNMYADVGRWDDANEVRLLMKS 561 (579)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (579)
+.++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66789999999999999999999998865
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.19 E-value=3.4e-10 Score=98.65 Aligned_cols=186 Identities=12% Similarity=0.003 Sum_probs=123.2
Q ss_pred CchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCCe----eeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChh----h
Q 036340 363 DVPINNALITMYARCGAIVEARIIFEEMK-LLKNV----VSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYI----T 433 (579)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~ 433 (579)
++..+..++..+...|++++|...|+++. ..|+. ..+..++.++.+.|++++|+..|+++.+. .|+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHH
Confidence 34455667777888888888888888764 23332 35677778888888888888888888754 34332 3
Q ss_pred HHHHHHHhcc------------------cCcHHHHHHHHHHhHHhhCCCCCc-chhHHHHHHhhccCChHHHHHHHHhCC
Q 036340 434 FISVLSACAH------------------AGLVEEGRQHFKSMVNEYGIEPRI-EHFASLVDIVGRHGRLEDAMDLIKGMP 494 (579)
Q Consensus 434 ~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 494 (579)
+..+..++.. .|++++|...|+++++. .|+. .......... ......
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~------- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL------- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH-------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH-------
Confidence 4444444443 45666666666666643 3322 2211111000 000000
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC---CCchhhhhhhhhcCCchHHHHHHHHHHhCCCCCCC
Q 036340 495 FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS---TPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPT 568 (579)
Q Consensus 495 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 568 (579)
......++..+.+.|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+...+.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01123456778899999999999999999999976 56889999999999999999999999887765443
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=2.5e-10 Score=102.21 Aligned_cols=100 Identities=6% Similarity=-0.101 Sum_probs=71.8
Q ss_pred CCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCC----eeeHHHHHHHHHhcCChHHHHHHHHHhHhCCC-CCC-hhh
Q 036340 361 IPDVPINNALITMYARCGAIVEARIIFEEMK-LLKN----VVSWNAMIGGCASHGFATEALELFKSMRSFKV-LPT-YIT 433 (579)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~-~~~ 433 (579)
+.++..+..++..+.+.|++++|...|+++. ..|+ ...+..+..++.+.|++++|+..|++..+... .|. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4456677777888888888888888888774 2343 45677778888888888888888888876421 122 235
Q ss_pred HHHHHHHhcc--------cCcHHHHHHHHHHhHHh
Q 036340 434 FISVLSACAH--------AGLVEEGRQHFKSMVNE 460 (579)
Q Consensus 434 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~ 460 (579)
+..+..++.. .|++++|+..|+++++.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 6666677777 88888888888888765
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=1.3e-09 Score=96.81 Aligned_cols=242 Identities=8% Similarity=-0.014 Sum_probs=144.8
Q ss_pred HHHHhcCCHHHHHHHHccCCCCChh-hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHH
Q 036340 272 SGYAQIGNLELALDFFKRMPQKNLV-SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGM 350 (579)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 350 (579)
+-..-.|++..++.-..++...+.. .-..+.++|...|++... ....|....+..+...+ ..+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence 4445578998888866665543322 333445778888887742 12233333333333322 221 56
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-CC---CCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCC
Q 036340 351 QIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-LL---KNVVSWNAMIGGCASHGFATEALELFKSMRSFK 426 (579)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 426 (579)
..++......+++...+..++.++...|++++|++++.+.. .. .+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-- 164 (310)
T 3mv2_B 87 EELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-- 164 (310)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 66665222224445555677777888888888888887762 22 2345566777778888888888888888874
Q ss_pred CCC-----ChhhHHHHHHH--hcccC--cHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CC-
Q 036340 427 VLP-----TYITFISVLSA--CAHAG--LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PF- 495 (579)
Q Consensus 427 ~~p-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~- 495 (579)
..| +..+...++.+ ....| ++.+|..+|+++... .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 355 24455555544 33333 788888888887543 344222233333777888888888887654 11
Q ss_pred ---------CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC
Q 036340 496 ---------EP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534 (579)
Q Consensus 496 ---------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 534 (579)
.| ++.++..++......|+ +|.++++++.+..|+++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 13 55566555555555565 677888888888888654
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=1.6e-10 Score=105.13 Aligned_cols=226 Identities=10% Similarity=0.012 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHhccCC-C-chhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhc
Q 036340 313 GAIKLFIQMQVEGEKPDRHTFSSILSMSSGI-V-DLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEM 390 (579)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 390 (579)
+|.+++.+..+. .+++...| .++ ... + +++.|...+.. .+..|...|++++|...|.+.
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~--------------a~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQ--------------AATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHH--------------HHHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHH
Confidence 466677666554 22222222 222 111 2 36666666554 345677778888888877765
Q ss_pred c-----C-CC--CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCC---CCC--hhhHHHHHHHhccc-CcHHHHHHHHHH
Q 036340 391 K-----L-LK--NVVSWNAMIGGCASHGFATEALELFKSMRSFKV---LPT--YITFISVLSACAHA-GLVEEGRQHFKS 456 (579)
Q Consensus 391 ~-----~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~-~~~~~a~~~~~~ 456 (579)
. . .+ ...+|+.+..+|...|++++|+..+++..+... .+. ..++..+...|... |++++|+..|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3 0 11 134677788888888888888888887764311 111 23677777777775 888888888887
Q ss_pred hHHhhCCCCC----cchhHHHHHHhhccCChHHHHHHHHhC-CCCC---CH-----HHHHHHHHHHhhcCCHHHHHHHHH
Q 036340 457 MVNEYGIEPR----IEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP---DK-----AVWGALLGACRVHNNVELAQVAAE 523 (579)
Q Consensus 457 ~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~-----~~~~~l~~~~~~~~~~~~A~~~~~ 523 (579)
.+.-..-..+ ..++..++.++.+.|++++|+..+++. ...| .. ..+..++.++...|++++|+..|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7653211111 345677788888888888888888776 2222 11 145666677777888888888888
Q ss_pred HHhhcCCCCCCC------chhhhhhhhhcCCchHHHHHHHHH
Q 036340 524 ALMKVEPENSTP------YVLLYNMYADVGRWDDANEVRLLM 559 (579)
Q Consensus 524 ~~~~~~p~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~ 559 (579)
++++++|+ ... +..++.++ ..++.++..+.++..
T Consensus 224 ~al~l~p~-~~~~~~~~~l~~l~~~~-~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 224 EGQSEDPN-FADSRESNFLKSLIDAV-NEGDSEQLSEHCKEF 263 (292)
T ss_dssp GGGCC----------HHHHHHHHHHH-HTTCTTTHHHHHHHH
T ss_pred HHHhhCCC-CCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHh
Confidence 88887775 221 11223322 345666666666554
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=2.2e-10 Score=102.61 Aligned_cols=184 Identities=10% Similarity=-0.027 Sum_probs=104.3
Q ss_pred ChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCC---chHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCC----eeeHH
Q 036340 329 DRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD---VPINNALITMYARCGAIVEARIIFEEMK-LLKN----VVSWN 400 (579)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~ 400 (579)
+...+......+...|+++.|...++......|.+ ...+..++.+|...|++++|...|+... ..|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 34455555566677777777777777755544444 5666777777777777777777777664 2232 23455
Q ss_pred HHHHHHHh--------cCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhH
Q 036340 401 AMIGGCAS--------HGFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFA 471 (579)
Q Consensus 401 ~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 471 (579)
.+..++.. .|++++|+..|+++.+. .|+.. ....+.. +..+... ....+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH-----HHHHHH
Confidence 66666666 77777777777777753 34332 2211110 0000000 001134
Q ss_pred HHHHHhhccCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHhhc----------CCHHHHHHHHHHHhhcCCCCC
Q 036340 472 SLVDIVGRHGRLEDAMDLIKGM-PFEP----DKAVWGALLGACRVH----------NNVELAQVAAEALMKVEPENS 533 (579)
Q Consensus 472 ~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~ 533 (579)
.++.+|.+.|++++|+..++++ ...| ....+..++.++... |++++|+..|+++++..|+++
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 4555666666666666666555 1112 233455555555543 667777777777777777764
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.15 E-value=3.2e-11 Score=97.28 Aligned_cols=125 Identities=9% Similarity=-0.081 Sum_probs=105.8
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC
Q 036340 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHN 513 (579)
Q Consensus 437 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~ 513 (579)
|...+...|++++|+..++... ...| +...+..++.+|.+.|++++|+..|++. ...| ++..|..++.++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4567788899999999999876 3345 4566778999999999999999999987 4455 7889999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHH-HHHHHhCCC
Q 036340 514 NVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV-RLLMKSNNI 564 (579)
Q Consensus 514 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~ 564 (579)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. ++++.+..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999887765 588776554
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=1.2e-09 Score=99.39 Aligned_cols=174 Identities=16% Similarity=0.102 Sum_probs=128.9
Q ss_pred hHHHHHHHhhCCCCCcchHHHHHHHHHccCCHHHHHHHhhcCCC-------C--chhhHHHHHHHHHhcCChhhHHHHHc
Q 036340 45 LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPA-------R--NVVSWNAMISGFLQNGDVANAIEFFD 115 (579)
Q Consensus 45 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 115 (579)
+++|...|++. +..|...|++++|...|++... + ...+|+.+..+|...|++++|+..++
T Consensus 33 ~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 101 (292)
T 1qqe_A 33 FEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77887766654 6678888999999988887651 1 14578889999999999999999988
Q ss_pred cCCCC-----C----cchHHHHHHHHHhC-CCHHHHHHHHHHhccCCCCCCC---chhhHHHHHHHHhhCCCHHHHHHHH
Q 036340 116 RMPGR-----D----SASLSALVSGLIQN-GELDEAARVLVKCGSRCDGGED---LVRAYNTLIVGYGQRGRVEEARKLF 182 (579)
Q Consensus 116 ~~~~~-----~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~ 182 (579)
+...- + ..++..+...+... |++++|+..|++++...+.... ...++..++..+...|++++|+..|
T Consensus 102 ~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 181 (292)
T 1qqe_A 102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 86531 1 34677888999996 9999999999998874211111 1356889999999999999999999
Q ss_pred ccccccCCCCCCCccCC-cc-hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 036340 183 DKIPVNCDRGEGNVRFK-RN-IVSWNSMIMCYAKAGDVVSAREIFEQMLERDT 233 (579)
Q Consensus 183 ~~~~~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 233 (579)
+++....+. .+.. .. ...+..+..++...|++++|...|++.++-++
T Consensus 182 ~~al~~~~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 182 SKLIKSSMG----NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHHHHTTSS----CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHhc----CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 998732110 0000 01 12577888899999999999999999877433
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.10 E-value=2.2e-09 Score=92.35 Aligned_cols=173 Identities=8% Similarity=-0.117 Sum_probs=136.1
Q ss_pred HHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccC----cHHHHHHHHHHhH
Q 036340 383 ARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG----LVEEGRQHFKSMV 458 (579)
Q Consensus 383 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 458 (579)
|.+.|++.....++..+..+...|...+++++|+++|++..+.| +...+..|...|.. + ++++|.++|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 45555555435667778888888888899999999999988765 45677777777777 6 8999999999886
Q ss_pred HhhCCCCCcchhHHHHHHhhc----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHhh----cCCHHHHHHHHHHHh
Q 036340 459 NEYGIEPRIEHFASLVDIVGR----HGRLEDAMDLIKGM-PFEPD---KAVWGALLGACRV----HNNVELAQVAAEALM 526 (579)
Q Consensus 459 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~ 526 (579)
+. -++..+..|+.+|.. .+++++|+.++++. ...|. +..+..+...|.. .+++++|+..|+++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 43 356677788888877 88999999999887 33443 7788888888877 789999999999999
Q ss_pred hcCCCCCCCchhhhhhhhhc-C-----CchHHHHHHHHHHhCCC
Q 036340 527 KVEPENSTPYVLLYNMYADV-G-----RWDDANEVRLLMKSNNI 564 (579)
Q Consensus 527 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 564 (579)
+. |.++.++..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66677889999988764 3 89999999999887764
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=4.6e-10 Score=88.78 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhh
Q 036340 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478 (579)
Q Consensus 399 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 478 (579)
|..++..+...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+++++...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------ 64 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------ 64 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------------
Confidence 4445555555566666666665555432 122334444555555555555555555555432
Q ss_pred ccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHH
Q 036340 479 RHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLL 558 (579)
Q Consensus 479 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 558 (579)
.+.+...+..++..+...|++++|...++++.+..|.++.++..++.++...|++++|...+++
T Consensus 65 ----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 65 ----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp ----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 1123344445555555555666666666666655555555555566666666666666666655
Q ss_pred HHh
Q 036340 559 MKS 561 (579)
Q Consensus 559 ~~~ 561 (579)
+.+
T Consensus 129 ~~~ 131 (136)
T 2fo7_A 129 ALE 131 (136)
T ss_dssp HHH
T ss_pred HHc
Confidence 543
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.09 E-value=2.5e-10 Score=116.80 Aligned_cols=168 Identities=9% Similarity=-0.032 Sum_probs=99.8
Q ss_pred hhcCCHHHHHHHHHhcc---------C-CCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHHhcc
Q 036340 375 ARCGAIVEARIIFEEMK---------L-LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVLSACAH 443 (579)
Q Consensus 375 ~~~~~~~~A~~~~~~~~---------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 443 (579)
...|++++|++.+++.. . +.+...+..+..++...|++++|+..|+++.+. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 45566666666665542 1 223445666666666666666666666666643 343 3356666666666
Q ss_pred cCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHH
Q 036340 444 AGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQV 520 (579)
Q Consensus 444 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 520 (579)
.|++++|...|+++++. .| +...+..++.++.+.|++++ +..|+++ ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666543 33 45556666666666666666 6666655 2233 45566666666666666666666
Q ss_pred HHHHHhhcCCCCCCCchhhhhhhhhcCC
Q 036340 521 AAEALMKVEPENSTPYVLLYNMYADVGR 548 (579)
Q Consensus 521 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 548 (579)
.|+++++++|++..++..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 6666666666666666666666655444
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=3.1e-10 Score=94.55 Aligned_cols=159 Identities=8% Similarity=0.002 Sum_probs=108.2
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHH
Q 036340 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI 476 (579)
Q Consensus 398 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 476 (579)
.+..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...++++... .|+......+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 3445556666777777777777776642 343 336666666777777777777777766543 2322222222211
Q ss_pred -hhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC--CCCchhhhhhhhhcCCchH
Q 036340 477 -VGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN--STPYVLLYNMYADVGRWDD 551 (579)
Q Consensus 477 -~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 551 (579)
+...+...+|+..+++. ...| +...+..+..++...|++++|+..|+++++.+|+. +.++..++.++...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 11222333466666665 3345 67888889999999999999999999999999875 4478899999999999999
Q ss_pred HHHHHHHHHh
Q 036340 552 ANEVRLLMKS 561 (579)
Q Consensus 552 A~~~~~~~~~ 561 (579)
|...+++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.07 E-value=4.2e-11 Score=95.94 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=83.7
Q ss_pred CCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchh
Q 036340 462 GIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538 (579)
Q Consensus 462 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 538 (579)
.+.| +...+..++..+.+.|++++|+..|+++ ...| ++..|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3445 4566777788888888888888888877 3344 67788888888888999999999999999999999999999
Q ss_pred hhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 539 LYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
++.+|...|++++|...+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998887655
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=1.2e-09 Score=99.06 Aligned_cols=166 Identities=13% Similarity=0.120 Sum_probs=110.0
Q ss_pred chHHHHHHHHhhhcCCHHHHHHHHHhcc-C--------CC-CeeeHHHHHHHHHhcCChHHHHHHHHHhHhC------CC
Q 036340 364 VPINNALITMYARCGAIVEARIIFEEMK-L--------LK-NVVSWNAMIGGCASHGFATEALELFKSMRSF------KV 427 (579)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~--------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~ 427 (579)
..++..+...|...|++++|...|.+.. . .| ....+..+...+...|++++|+..++++.+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4456777888888888888888887653 1 12 2456778888899999999999999988764 11
Q ss_pred CCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhh------CCCC-CcchhHHHHHHhhccC------ChHHHHHHHHhC
Q 036340 428 LPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEY------GIEP-RIEHFASLVDIVGRHG------RLEDAMDLIKGM 493 (579)
Q Consensus 428 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~ 493 (579)
.|+ ..++..+...+...|++++|..+++++++.. ...+ ....+..+...+...+ .+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 343 3478888889999999999999999887531 1122 2333444443333322 344455555555
Q ss_pred C-CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcC
Q 036340 494 P-FEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVE 529 (579)
Q Consensus 494 ~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 529 (579)
. ..| ....+..++.++...|++++|...++++++..
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3 223 34577888899999999999999999998653
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=1.2e-08 Score=90.69 Aligned_cols=176 Identities=12% Similarity=-0.024 Sum_probs=105.2
Q ss_pred HHHHHHhccC--CCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHH
Q 036340 383 ARIIFEEMKL--LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVLSACAHAGLVEEGRQHFKSMVN 459 (579)
Q Consensus 383 A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 459 (579)
|+..|+++.. .++..++..+..++...|++++|++++.+.+..+..++ ...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5566665431 23444455666667777777777777777664432123 33666666677777777777777777753
Q ss_pred hhCCCC-----CcchhHHHHHH--hhccC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhc-
Q 036340 460 EYGIEP-----RIEHFASLVDI--VGRHG--RLEDAMDLIKGM-PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKV- 528 (579)
Q Consensus 460 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 528 (579)
. .| +..+...++.+ ....| ++.+|..+|+++ ...|+..+-..+..++.+.|++++|...++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 44 23444444444 22233 777777777776 33344222233333666777777777777766654
Q ss_pred ---------CCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 529 ---------EPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 529 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
+|+++.++..++.+....|+ +|.++++++++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 36677766666666666665 6777777776655
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=7.4e-10 Score=100.35 Aligned_cols=173 Identities=9% Similarity=-0.036 Sum_probs=134.8
Q ss_pred HHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh-hhHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 036340 382 EARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY-ITFISVLSACAHAGLVEEGRQHFKSMVNE 460 (579)
Q Consensus 382 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 460 (579)
.....+.... +.+...+..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|...++++...
T Consensus 104 ~l~~~l~~~l-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 104 AIRALLDXVL-PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHS-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3344444443 444556677788888899999999999998864 5644 47888888999999999999999988643
Q ss_pred hCCCCCcchh-HHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC--CCC
Q 036340 461 YGIEPRIEHF-ASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN--STP 535 (579)
Q Consensus 461 ~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~ 535 (579)
.|+.... ......+...++.++|...+++. ...| +...+..+...+...|++++|+..|+++++.+|++ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 4543322 23333466778888888888776 3344 77889999999999999999999999999999998 778
Q ss_pred chhhhhhhhhcCCchHHHHHHHHHH
Q 036340 536 YVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
+..++.++...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999999988764
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=3.9e-09 Score=83.29 Aligned_cols=123 Identities=14% Similarity=0.163 Sum_probs=88.0
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhc
Q 036340 365 PINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442 (579)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 442 (579)
..+..++..+...|++++|..+++++. .+.+...+..++..+...|++++|..+++++.... +.+...+..+...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 356778899999999999999999874 34456678889999999999999999999998653 334557777888888
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHH
Q 036340 443 HAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLI 490 (579)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 490 (579)
..|++++|..+++.+.... +.+...+..++.++...|++++|...+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 8899999998888876531 112333333444444444444443333
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.02 E-value=9.4e-10 Score=110.65 Aligned_cols=159 Identities=11% Similarity=0.049 Sum_probs=123.0
Q ss_pred cCCHHHHHHHHHhcc-CCC-CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHHhcccCcHHHHHHH
Q 036340 377 CGAIVEARIIFEEMK-LLK-NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVLSACAHAGLVEEGRQH 453 (579)
Q Consensus 377 ~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 453 (579)
.|++++|...|++.. ..| +...|..+...+...|++++|++.+++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999998874 333 5677889999999999999999999999964 564 45888899999999999999999
Q ss_pred HHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---CCHHHHHHHHHHHhh
Q 036340 454 FKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVH---NNVELAQVAAEALMK 527 (579)
Q Consensus 454 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~ 527 (579)
+++.++. .| +...+..++.++.+.|++++|.+.+++. ...| +...+..+..++... |++++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999864 34 5778899999999999999999999987 3344 677888999999999 999999999999999
Q ss_pred cCCCCCCCchhhh
Q 036340 528 VEPENSTPYVLLY 540 (579)
Q Consensus 528 ~~p~~~~~~~~l~ 540 (579)
.+|.+...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988777776
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.01 E-value=5.9e-10 Score=86.61 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=78.4
Q ss_pred CCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHH
Q 036340 427 VLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVW 502 (579)
Q Consensus 427 ~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~ 502 (579)
+.|+.. .+......|.+.|++++|++.|+++++. .| +...+..++.++.+.|++++|+..+++. ...| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 455443 5666677777777777777777777643 33 5566777777777777777777777765 3333 56677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhh
Q 036340 503 GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542 (579)
Q Consensus 503 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 542 (579)
..++.++...|++++|+..|+++++++|+++.++..|+.+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 7777777777888888888888888888777666666544
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.00 E-value=1.9e-09 Score=92.54 Aligned_cols=159 Identities=10% Similarity=-0.007 Sum_probs=116.0
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhcc-CCC-CeeeHHH----------------HHHHHHhcCChHHHHHHHHHhHhCCCCC
Q 036340 368 NALITMYARCGAIVEARIIFEEMK-LLK-NVVSWNA----------------MIGGCASHGFATEALELFKSMRSFKVLP 429 (579)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~~~~p 429 (579)
...+..+...|++++|...|++.. ..| +...|.. +..++.+.|++++|+..|++..+. .|
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--AP 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CC
Confidence 334555667777888877777653 233 3344555 888899999999999999999864 56
Q ss_pred C-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCC--hHHHHHHHHhCCCCCCH--HHHH
Q 036340 430 T-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGR--LEDAMDLIKGMPFEPDK--AVWG 503 (579)
Q Consensus 430 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~ 503 (579)
+ ...+..+..++...|++++|+..|+++++. .| +...+..++.+|...|+ ...+...++... .|++ ..+.
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~ 161 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARY 161 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHH
Confidence 4 458888889999999999999999999864 45 56788888888876654 345566666653 3333 3444
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhhcCCCC
Q 036340 504 ALLGACRVHNNVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 504 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 532 (579)
....++...|++++|+..|++++++.|++
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 55666777899999999999999999973
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=5.2e-09 Score=87.04 Aligned_cols=154 Identities=18% Similarity=0.112 Sum_probs=95.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHhhcCC---CCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCc--chHHHHHHH-HHhC
Q 036340 62 TWNTVISGYAKTGEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDS--ASLSALVSG-LIQN 135 (579)
Q Consensus 62 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~-~~~~ 135 (579)
.+..+...+.+.|++++|+..|++.. +.++..+..+..++...|++++|+..++++...++ ..+...... +...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 34455566667777777777777766 34455667777777777777777777777654322 211111111 1122
Q ss_pred CCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCc---chHHHHHHHHHH
Q 036340 136 GELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR---NIVSWNSMIMCY 212 (579)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~ 212 (579)
+...+|+..++++++ ..|.+..++..++.++...|++++|...|+++.. ..| +...+..++.++
T Consensus 88 ~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----------~~p~~~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 88 AAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILK----------VNLGAQDGEVKKTFMDIL 154 (176)
T ss_dssp HTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----------TCTTTTTTHHHHHHHHHH
T ss_pred cccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH----------hCcccChHHHHHHHHHHH
Confidence 223346677777766 3455667777777778888888888888877762 123 244677777777
Q ss_pred HhcCCHHHHHHHHHhc
Q 036340 213 AKAGDVVSAREIFEQM 228 (579)
Q Consensus 213 ~~~~~~~~A~~~~~~~ 228 (579)
...|+.++|...|++.
T Consensus 155 ~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 155 SALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHCSSCHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHH
Confidence 7777777777777653
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=7.3e-09 Score=105.92 Aligned_cols=144 Identities=10% Similarity=0.042 Sum_probs=65.4
Q ss_pred CCchHHHHHHHHhhhcCCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHHHHH
Q 036340 362 PDVPINNALITMYARCGAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVL 438 (579)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 438 (579)
.+...+..+...+...|++++|...|++.. .+.+...|..+..++...|++++|+..|++..+. .|+ ...+..+.
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg 508 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALA 508 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 344444444455555555555555554432 1223334444555555555555555555554432 232 22444444
Q ss_pred HHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhh
Q 036340 439 SACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPD-KAVWGALLGACRV 511 (579)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~ 511 (579)
.++...|++++ ++.|+++++. .| +...+..++.++.+.|++++|+..++++ ...|+ ...+..+..++..
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 45555555555 5555544432 22 3344445555555555555555555544 23332 2344444444433
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=5.7e-09 Score=95.68 Aligned_cols=220 Identities=9% Similarity=-0.023 Sum_probs=150.6
Q ss_pred CCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHH
Q 036340 308 NKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIF 387 (579)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 387 (579)
.|++++|.+++++..+.... . .+...++++.|...+.. .+..|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~--------------a~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK--------------AAVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHH
Confidence 46677788888776653211 1 01114667777666544 355677788888888888
Q ss_pred Hhcc----CCCC----eeeHHHHHHHHHhcCChHHHHHHHHHhHhCCC---CCC--hhhHHHHHHHhcccCcHHHHHHHH
Q 036340 388 EEMK----LLKN----VVSWNAMIGGCASHGFATEALELFKSMRSFKV---LPT--YITFISVLSACAHAGLVEEGRQHF 454 (579)
Q Consensus 388 ~~~~----~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~ 454 (579)
.+.. ...+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|+..|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 7653 1111 34678888889999999999999988764311 122 2467788888888 9999999999
Q ss_pred HHhHHhhCCCC----CcchhHHHHHHhhccCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHhhcCCHHHHHHHH
Q 036340 455 KSMVNEYGIEP----RIEHFASLVDIVGRHGRLEDAMDLIKGM-P---FEPD----KAVWGALLGACRVHNNVELAQVAA 522 (579)
Q Consensus 455 ~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~~----~~~~~~l~~~~~~~~~~~~A~~~~ 522 (579)
++.+.-..-.. ...++..++.+|.+.|++++|+..+++. . ..++ ...+..++.++...|++++|+..|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 98875421111 1457788899999999999999999887 1 1112 225566667777889999999999
Q ss_pred HHHhhcCCCCCCC-----chhhhhhhhhcCCchHHHH
Q 036340 523 EALMKVEPENSTP-----YVLLYNMYADVGRWDDANE 554 (579)
Q Consensus 523 ~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 554 (579)
++++ ..|..... +..++.++ ..|+.+.+.+
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999 99987654 33444444 5677666655
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=1.3e-08 Score=88.45 Aligned_cols=185 Identities=11% Similarity=-0.014 Sum_probs=132.0
Q ss_pred hhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCC---chHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCCee----eHHH
Q 036340 330 RHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPD---VPINNALITMYARCGAIVEARIIFEEMK-LLKNVV----SWNA 401 (579)
Q Consensus 330 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~----~~~~ 401 (579)
...+......+...|+++.|...++......|.+ ...+..++.+|.+.|++++|+..|+++. ..|+.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566677889999999999999954444433 4578889999999999999999999874 344432 4555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhC
Q 036340 402 MIGGCAS------------------HGFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYG 462 (579)
Q Consensus 402 l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 462 (579)
+..++.. .|++++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 6666554 57899999999999954 56654 3322111 011111111
Q ss_pred CCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCC
Q 036340 463 IEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPD----KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535 (579)
Q Consensus 463 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 535 (579)
.....++..|.+.|++++|+..++++ ...|+ ...+..++.++.+.|+.++|+..++++....|++...
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 11245678889999999999999887 33333 2567888899999999999999999999999987654
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=6.1e-09 Score=89.29 Aligned_cols=108 Identities=15% Similarity=0.151 Sum_probs=66.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHH----------------HHHHHhhCCCHHHHHHHHcccccc
Q 036340 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNT----------------LIVGYGQRGRVEEARKLFDKIPVN 188 (579)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~ 188 (579)
+......+...|++++|+..|++++. ..|.+..++.. ++.++...|++++|+..|+++...
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA---LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34445566677888888888888776 33445555555 666677777777777777766511
Q ss_pred CCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHH
Q 036340 189 CDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER---DTFSWNTMISGYI 244 (579)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 244 (579)
. +.+...+..+..++...|++++|...|+++++. +..++..+...+.
T Consensus 84 --------~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 84 --------A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp --------C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 1 334566666677777777777777777666442 3344444444443
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=2.9e-09 Score=97.65 Aligned_cols=196 Identities=8% Similarity=-0.058 Sum_probs=147.0
Q ss_pred CCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHh
Q 036340 343 IVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSM 422 (579)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 422 (579)
.|+++.|..+++...+..+.. .+...++++.|...|... +..|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHH
Confidence 467778888887744333321 011147888888887764 45788899999999999887
Q ss_pred HhCC----CCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCC--CC--CcchhHHHHHHhhccCChHHHHHHHHhC
Q 036340 423 RSFK----VLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGI--EP--RIEHFASLVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 423 ~~~~----~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 493 (579)
.+.. -.+. ..+|..+...|...|++++|+..|++.+.-..- .+ ...++..++.+|.. |++++|+..+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 6432 1111 237888888999999999999999988654211 11 13577889999988 9999999999876
Q ss_pred -CC-----CC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC------CchhhhhhhhhcCCchHHHHHHHHH
Q 036340 494 -PF-----EP--DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST------PYVLLYNMYADVGRWDDANEVRLLM 559 (579)
Q Consensus 494 -~~-----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (579)
.. .+ ...++..+...+...|++++|+..|++++++.|.+.. .+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 11 1457888889999999999999999999998776543 5667788888999999999999998
Q ss_pred H
Q 036340 560 K 560 (579)
Q Consensus 560 ~ 560 (579)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=9e-09 Score=103.48 Aligned_cols=145 Identities=12% Similarity=-0.020 Sum_probs=65.4
Q ss_pred CchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHHHHHHHhcc-C-CCCeeeHHHHHHHHHhcCChHHHHHHHHH
Q 036340 344 VDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEARIIFEEMK-L-LKNVVSWNAMIGGCASHGFATEALELFKS 421 (579)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 421 (579)
|+++.|...++......+.+...+..+...+...|++++|.+.|++.. . +.+...+..+..++...|++++|++.+++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444555555555333344445555555555555555555555555542 1 22334455555555555555555555555
Q ss_pred hHhCCCCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhcc---CChHHHHHHHHhC
Q 036340 422 MRSFKVLPT-YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRH---GRLEDAMDLIKGM 493 (579)
Q Consensus 422 ~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 493 (579)
..+. .|+ ...+..+..++...|++++|.+.++++++. .| +...+..++.++... |+.++|.+.+++.
T Consensus 83 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 83 ASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 5542 232 235555555555555555555555555432 22 344455555555555 5555555555544
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.93 E-value=9.6e-10 Score=88.25 Aligned_cols=99 Identities=9% Similarity=-0.006 Sum_probs=55.2
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGAC 509 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 509 (579)
.+..+...+...|++++|...|+.++.. .| +...+..++.++...|++++|+..++++ ...| ++..+..++.++
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4455555566666666666666665532 23 4455555555666666666666665554 2222 444555555555
Q ss_pred hhcCCHHHHHHHHHHHhhcCCCCCC
Q 036340 510 RVHNNVELAQVAAEALMKVEPENST 534 (579)
Q Consensus 510 ~~~~~~~~A~~~~~~~~~~~p~~~~ 534 (579)
...|++++|+..|++++++.|+++.
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 5666666666666666666555543
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.93 E-value=1.5e-09 Score=84.25 Aligned_cols=102 Identities=10% Similarity=0.096 Sum_probs=91.5
Q ss_pred CCCC-cchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhh
Q 036340 463 IEPR-IEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539 (579)
Q Consensus 463 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 539 (579)
+.|+ ...+...+..+.+.|++++|+..|++. ...| +...|..++.++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4553 466778899999999999999999987 4444 788999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 540 YNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
+.+|...|++++|.+.+++..+..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999987654
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.92 E-value=8.3e-09 Score=93.42 Aligned_cols=171 Identities=14% Similarity=0.050 Sum_probs=128.6
Q ss_pred hHHHHHHHhhCCCCCcchHHHHHHHHHccCCHHHHHHHhhcCC---CCchhhHHHHHHHHHhcCChhhHHHHHccCCCCC
Q 036340 45 LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMP---ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD 121 (579)
Q Consensus 45 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 121 (579)
.+....++....+.+...+..+...+.+.|++++|+..|+++. +.+..++..+..++...|++++|+..++++...+
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD 181 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence 3445555555555556677778888888899999999988876 4466788888889999999999999999887633
Q ss_pred cch--H-HHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccC
Q 036340 122 SAS--L-SALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRF 198 (579)
Q Consensus 122 ~~~--~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 198 (579)
+.. . ......+...++.++|+..++++.. ..|.+..++..++..+...|++++|...|+++...
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~---~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---------- 248 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVA---ENPEDAALATQLALQLHQVGRNEEALELLFGHLRX---------- 248 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHh---cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----------
Confidence 322 1 2223335667778888888888887 45777888889999999999999999999988722
Q ss_pred Cc---chHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036340 199 KR---NIVSWNSMIMCYAKAGDVVSAREIFEQM 228 (579)
Q Consensus 199 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (579)
.| +...+..++..+...|+.+.|...|++.
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 23 2667888888888888888888777653
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=9e-09 Score=88.79 Aligned_cols=129 Identities=11% Similarity=-0.045 Sum_probs=107.5
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHh
Q 036340 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477 (579)
Q Consensus 398 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 477 (579)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...+++.+.. .+.+...+..++.++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 35567778889999999999998874 567788999999999999999999999998864 133567888999999
Q ss_pred hccCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC
Q 036340 478 GRHGRLEDAMDLIKGM-PFEP-D----------------KAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 478 ~~~g~~~~A~~~~~~~-~~~~-~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 532 (579)
...|++++|...+++. ...| + ...+..++.++...|++++|...++++++..|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999887 2222 2 2678888889999999999999999999999986
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.86 E-value=5.3e-09 Score=91.60 Aligned_cols=184 Identities=11% Similarity=-0.030 Sum_probs=115.1
Q ss_pred hcCCHHHHHHHHHhcc-CCC-CeeeHHHH-------HHHHHhcCChHHHHHHHHHhHhCCCCCChh--------------
Q 036340 376 RCGAIVEARIIFEEMK-LLK-NVVSWNAM-------IGGCASHGFATEALELFKSMRSFKVLPTYI-------------- 432 (579)
Q Consensus 376 ~~~~~~~A~~~~~~~~-~~~-~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-------------- 432 (579)
..++...|.+.|.++. ..| ....|..+ ..++...++..+++..+++-. ++.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhccCCcccccc
Confidence 4577777777777764 233 34456666 455555555556655555554 3333211
Q ss_pred --------hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCH----H
Q 036340 433 --------TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDK----A 500 (579)
Q Consensus 433 --------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 500 (579)
....+...+...|++++|.++|+.+.. ..|+......++..+.+.|++++|+..|+.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 223344566777888888888776653 2343225556666777788888888888766333322 3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhhcC--CC-CCCCchhhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 501 VWGALLGACRVHNNVELAQVAAEALMKVE--PE-NSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 501 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
.+..+..++...|++++|+..|+++.... |. .+.++..++.++.+.|+.++|...|+++....+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 56666777777888888888888776433 43 334567777788888888888888887766554
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.85 E-value=6.3e-09 Score=93.81 Aligned_cols=191 Identities=7% Similarity=-0.090 Sum_probs=135.0
Q ss_pred CchHHHHHHHHhhhcCCHHHHHHHHHhcc-CCC-CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh-hhHHHHHH
Q 036340 363 DVPINNALITMYARCGAIVEARIIFEEMK-LLK-NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTY-ITFISVLS 439 (579)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~ 439 (579)
+...+..++..+...|++++|...|++.. ..| +...|..+..++.+.|++++|+..+++..+ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45567778888999999999999999874 334 677788899999999999999999999985 45654 48888888
Q ss_pred HhcccCcHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 036340 440 ACAHAGLVEEGRQHFKSMVNEYGIEPR-IEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELA 518 (579)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 518 (579)
++...|++++|...|+++++. .|+ ...+...+....+......... .......++......+... ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 999999999999999988754 232 1122222222222211111111 2222333444444444332 36899999
Q ss_pred HHHHHHHhhcCCCCCCCchhhhhhhhhc-CCchHHHHHHHHHHh
Q 036340 519 QVAAEALMKVEPENSTPYVLLYNMYADV-GRWDDANEVRLLMKS 561 (579)
Q Consensus 519 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 561 (579)
++.++++++.+|++......+...+.+. +.+++|.++|+++.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999877777777777666 778999999998765
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=5e-08 Score=84.02 Aligned_cols=152 Identities=9% Similarity=-0.064 Sum_probs=119.2
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccC
Q 036340 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAG 445 (579)
Q Consensus 366 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 445 (579)
.+..+...+...|++++|...|++.. .|+...|..+..++...|++++|+..+++..+.. +.+...+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 35667888899999999999999986 7788889999999999999999999999998643 234558888999999999
Q ss_pred cHHHHHHHHHHhHHhhCCC-------------C-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHh
Q 036340 446 LVEEGRQHFKSMVNEYGIE-------------P-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPDKAVWGALLGACR 510 (579)
Q Consensus 446 ~~~~a~~~~~~~~~~~~~~-------------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~ 510 (579)
++++|...|+++++...-. | ....+..++.++...|++++|...+++. ...|+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------- 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP----------- 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc-----------
Confidence 9999999999998642111 1 1267888999999999999999999987 566654
Q ss_pred hcCCHHHHHHHHHHHhhcCC
Q 036340 511 VHNNVELAQVAAEALMKVEP 530 (579)
Q Consensus 511 ~~~~~~~A~~~~~~~~~~~p 530 (579)
..+..+.+...+++.....|
T Consensus 155 ~~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 155 RHSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp GGGHHHHHHHHHHTTCCCCC
T ss_pred ccchHHHHHHHHHhcccccc
Confidence 23455666666654444333
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.82 E-value=1.7e-07 Score=80.36 Aligned_cols=161 Identities=10% Similarity=-0.095 Sum_probs=123.2
Q ss_pred CchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcC----ChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 036340 363 DVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHG----FATEALELFKSMRSFKVLPTYITFISVL 438 (579)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 438 (579)
++..+..+...|...+++++|...|++.....++..+..+...|.. + ++++|+++|++..+.| +...+..|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4556677778888888899998888887645566777788888777 6 8899999999987654 455777777
Q ss_pred HHhcc----cCcHHHHHHHHHHhHHhhCCCCC---cchhHHHHHHhhc----cCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036340 439 SACAH----AGLVEEGRQHFKSMVNEYGIEPR---IEHFASLVDIVGR----HGRLEDAMDLIKGM-PFEPDKAVWGALL 506 (579)
Q Consensus 439 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 506 (579)
..|.. .+++++|..+|++..+. .|+ +..+..|+.+|.. .+++++|...|++. ...+++..+..+.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77776 78999999999888643 342 6777888888887 78899999999887 3335666777777
Q ss_pred HHHhhc-C-----CHHHHHHHHHHHhhcCC
Q 036340 507 GACRVH-N-----NVELAQVAAEALMKVEP 530 (579)
Q Consensus 507 ~~~~~~-~-----~~~~A~~~~~~~~~~~p 530 (579)
..|... | +.++|+..|+++.+..+
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 777543 3 89999999999887654
No 121
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.81 E-value=7.4e-09 Score=82.56 Aligned_cols=99 Identities=9% Similarity=-0.001 Sum_probs=53.8
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGAC 509 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 509 (579)
.+..+...+...|++++|...|+.++.. .| +...+..++.++.+.|++++|+..+++. ...| ++..+..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4444555555666666666666665542 23 4445555555555666666666555554 2222 344555555555
Q ss_pred hhcCCHHHHHHHHHHHhhcCCCCCC
Q 036340 510 RVHNNVELAQVAAEALMKVEPENST 534 (579)
Q Consensus 510 ~~~~~~~~A~~~~~~~~~~~p~~~~ 534 (579)
...|++++|+..|++++++.|+++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 5556666666666666555555543
No 122
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.81 E-value=7.9e-07 Score=86.64 Aligned_cols=372 Identities=8% Similarity=-0.041 Sum_probs=207.1
Q ss_pred cC-ChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCC-HHHHHHH
Q 036340 104 NG-DVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR-VEEARKL 181 (579)
Q Consensus 104 ~~-~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 181 (579)
.| +++.|..+|+.+.. .+ -.|+++.+..+|++++.. .|+...|...+....+.++ .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~-----------~~-P~~~~e~~~~iferal~~----~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARR-----------LY-MSKDYRSLESLFGRCLKK----SYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHH-----------HH-HTTCHHHHHHHHHHHSTT----CCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHH-----------HC-CCCCHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 36777777666432 11 128999999999999884 2477788887777766663 4556777
Q ss_pred HccccccCCCCCCCccC-CcchHHHHHHHHHHH----hcCCHHHHHHHHHhcCCCChhHHHHHHHHH---HhcCChHHHH
Q 036340 182 FDKIPVNCDRGEGNVRF-KRNIVSWNSMIMCYA----KAGDVVSAREIFEQMLERDTFSWNTMISGY---IHVLDMEEAS 253 (579)
Q Consensus 182 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~ 253 (579)
|+.+... .|. +++...|...+..+. ..++.+.+.++|++.+..-...+..+-..| ....+...+.
T Consensus 71 fe~al~~-------vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 71 YEFTLGQ-------FENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp HHHHHHH-------STTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHH-------cCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHH
Confidence 7776621 232 346678888777654 346788899999988662111111111111 1111111222
Q ss_pred HHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHccCCC----CChhhHHHHHHHHHhCC--C-----chHHHHHHHHHH
Q 036340 254 NLFVKMPHPDTLTWNAMVSGYAQIGNLELALDFFKRMPQ----KNLVSWNSMIAGCETNK--D-----YEGAIKLFIQMQ 322 (579)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~ 322 (579)
.++.+. .+.+..|..+++.+.. .+...|...+..-...+ - .+.+..+|++++
T Consensus 144 ~~~~~~-----------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al 206 (493)
T 2uy1_A 144 KIVGDT-----------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL 206 (493)
T ss_dssp HHHHHH-----------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHH
Confidence 221110 0111222222211111 12334444444322211 0 234566777766
Q ss_pred HcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCHHHH-HHHHHhcc-C--------
Q 036340 323 VEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAIVEA-RIIFEEMK-L-------- 392 (579)
Q Consensus 323 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~-~-------- 392 (579)
... +.+...|...+..+...|+.+.|..+++..... |.+...+...+.. .+.++. ..+.+... .
T Consensus 207 ~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~----~e~~~~~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 207 DSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV----MDEEAVYGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp HHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH----TTCTHHHHHHHHHTC----------
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh----cchhHHHHHHHHHHHhhccchhhhh
Confidence 643 223555555555566677777777777773333 4444433322211 111111 11221110 0
Q ss_pred --CCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcc-cCcHHHHHHHHHHhHHhhCCCCCcch
Q 036340 393 --LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAH-AGLVEEGRQHFKSMVNEYGIEPRIEH 469 (579)
Q Consensus 393 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~ 469 (579)
......|...+....+.++.+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+..++.++ .++..
T Consensus 281 ~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~ 356 (493)
T 2uy1_A 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLL 356 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHH
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHH
Confidence 001234666677777788899999999998 32 12233344332222222 3369999999999988642 23455
Q ss_pred hHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhh
Q 036340 470 FASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMK 527 (579)
Q Consensus 470 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 527 (579)
+...++.....|+.+.|..+|+.+. .....|...+..-...|+.+.+..+++++.+
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6667787888999999999999983 3567888888777788999999999999874
No 123
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.79 E-value=2.8e-07 Score=82.81 Aligned_cols=227 Identities=11% Similarity=0.024 Sum_probs=109.3
Q ss_pred HhCCC-chHHHHHHHHHHHcCCCCChhh-HHHHHHhccCCC--chhhHHHHHHHHhhcCCCCchHHHHHHHHh----hhc
Q 036340 306 ETNKD-YEGAIKLFIQMQVEGEKPDRHT-FSSILSMSSGIV--DLHLGMQIHQMVTKTVIPDVPINNALITMY----ARC 377 (579)
Q Consensus 306 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 377 (579)
.+.|. .++|+.++++++.. .|+..| ++.--.++...+ +++.+...++......|.+..+++.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc
Confidence 34444 45788888887764 344333 333333334444 555666665554444555555554444443 333
Q ss_pred ---CCHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChH--HHHHHHHHhHhCCCCCChhhHHHHHHHhcccCc----
Q 036340 378 ---GAIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGFAT--EALELFKSMRSFKVLPTYITFISVLSACAHAGL---- 446 (579)
Q Consensus 378 ---~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---- 446 (579)
++++++..+++.+. .+.+..+|+--..++.+.|.++ ++++.++++.+.. .-|...|..-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 45555555555543 2334444554444555555555 5555555555432 1123344443333444443
Q ss_pred --HHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHhhcCCHHH
Q 036340 447 --VEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLED-AMDLIKGM-PF----EPDKAVWGALLGACRVHNNVEL 517 (579)
Q Consensus 447 --~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~ 517 (579)
++++++.++.++.. .| |...|+.+..++.+.|+..+ +..++.++ .. ..++..+..++.++.+.|+.++
T Consensus 200 ~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 55555555555432 22 44455555555555554333 33344433 11 1244455555555555555555
Q ss_pred HHHHHHHHhh-cCCCCCCCchh
Q 036340 518 AQVAAEALMK-VEPENSTPYVL 538 (579)
Q Consensus 518 A~~~~~~~~~-~~p~~~~~~~~ 538 (579)
|++.++.+.+ .+|.+...|..
T Consensus 277 A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHHhccChHHHHHHHH
Confidence 5555555553 45554443333
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.79 E-value=2.5e-08 Score=79.69 Aligned_cols=105 Identities=12% Similarity=0.054 Sum_probs=83.7
Q ss_pred CCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHH
Q 036340 426 KVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAV 501 (579)
Q Consensus 426 ~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 501 (579)
.+.|+.. .+..+...+...|++++|...|++++.. .| +...|..++.++...|++++|+..|+++ ...| ++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence 3456544 6777777888888899998888888754 45 5777888888888889999998888887 3344 6778
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC
Q 036340 502 WGALLGACRVHNNVELAQVAAEALMKVEPENS 533 (579)
Q Consensus 502 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 533 (579)
|..+..++...|++++|+..|++++++.|+++
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888889999999999999999999988753
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.79 E-value=2.1e-08 Score=87.86 Aligned_cols=175 Identities=12% Similarity=0.018 Sum_probs=134.3
Q ss_pred cCCCHHHHHHHhccCCC--C-chhHHHHH-------HHHHHHcCCCCChHHHHHHHhhCCCCCc----------------
Q 036340 7 KRREMAKARKLFDEMPQ--R-DVVSWNVM-------ISGYISSRGSGFLEEARYLFDIMPERDC---------------- 60 (579)
Q Consensus 7 ~~~~~~~A~~~~~~~~~--~-~~~~~~~l-------~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------- 60 (579)
..+++..|.+.|.++.+ | ....|..+ ..++..... ..++...+....+-.+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r---~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWY---SRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHH---TGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHH---HHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 57999999999999986 3 35678777 455555555 5555555555443111
Q ss_pred --------chHHHHHHHHHccCCHHHHHHHhhcCC--CCchhhHHHHHHHHHhcCChhhHHHHHccCCCCC-----cchH
Q 036340 61 --------VTWNTVISGYAKTGEMEEALRLFNSMP--ARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRD-----SASL 125 (579)
Q Consensus 61 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~ 125 (579)
...-.+...+...|++++|.++|+.+. .|+......+...+.+.+++++|+..|+...... ...+
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence 123456677889999999999999997 3443467777789999999999999999776532 2467
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhccCCCCC-CC-chhhHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 126 SALVSGLIQNGELDEAARVLVKCGSRCDGG-ED-LVRAYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 126 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
..+..++...|++++|+..|++.... .. |. ........+.++.+.|+.++|..+|+++.
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g--~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDS--PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS--TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcC--CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 78899999999999999999999752 22 33 45578889999999999999999999997
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.79 E-value=2e-08 Score=82.55 Aligned_cols=126 Identities=8% Similarity=-0.040 Sum_probs=87.5
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHh
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PF-EPDKAVWGALLGACR 510 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~ 510 (579)
.+..+...+...|++++|...+++.+.. .+.+...+..++.++...|++++|...+++. .. +.+...+..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4455555666677777777777766643 1224566666777777777777777777665 22 235667777888888
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCCCCchhhhh--hhhhcCCchHHHHHHHHHH
Q 036340 511 VHNNVELAQVAAEALMKVEPENSTPYVLLYN--MYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 511 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~ 560 (579)
..|++++|...++++++..|.++..+..+.. .+...|++++|.+.+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888888888887776644443 4777888888888877653
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.79 E-value=6.8e-08 Score=87.88 Aligned_cols=162 Identities=9% Similarity=-0.052 Sum_probs=106.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh-----hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC----cch
Q 036340 399 WNAMIGGCASHGFATEALELFKSMRSFKVLPTY-----ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR----IEH 469 (579)
Q Consensus 399 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 469 (579)
+...+..+...|++++|++.+++..+....... ..+..+...+...|++++|...+++.+.......+ ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344556677777888888777776653221111 12333445566777888888888777643111111 236
Q ss_pred hHHHHHHhhccCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC------CC
Q 036340 470 FASLVDIVGRHGRLEDAMDLIKGM----PFEPD-----KAVWGALLGACRVHNNVELAQVAAEALMKVEPEN------ST 534 (579)
Q Consensus 470 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~ 534 (579)
+..++.+|...|++++|...++++ ...|+ ..++..++..|...|++++|+..+++++++.+.. ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 677788888888888888887765 11122 2477788888888999999999999888654321 34
Q ss_pred CchhhhhhhhhcCCchHH-HHHHHHHH
Q 036340 535 PYVLLYNMYADVGRWDDA-NEVRLLMK 560 (579)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A-~~~~~~~~ 560 (579)
++..++.+|...|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 567888888999999999 77677653
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.79 E-value=6.2e-09 Score=86.74 Aligned_cols=126 Identities=9% Similarity=0.036 Sum_probs=81.2
Q ss_pred HHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHH-hhccCCh-
Q 036340 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDI-VGRHGRL- 483 (579)
Q Consensus 406 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 483 (579)
+...|++++|+..+++..+.. +.+...+..+...|...|++++|...|+++++.. +.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 345667777777777776532 2234467777777777788888888777776542 2245566666766 6677776
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC
Q 036340 484 -EDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534 (579)
Q Consensus 484 -~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 534 (579)
++|...++++ ...| +...+..++..+...|++++|+..++++++..|+++.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 7777777766 2233 4566777777777777777777777777777777644
No 129
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.77 E-value=3.1e-08 Score=74.99 Aligned_cols=101 Identities=13% Similarity=0.070 Sum_probs=83.1
Q ss_pred CcchhHHHHHHhhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCC--CCCCchhhhh
Q 036340 466 RIEHFASLVDIVGRHGRLEDAMDLIKGM-PF-EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPE--NSTPYVLLYN 541 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 541 (579)
+...+..++..+...|++++|...+++. .. +.+...+..++.++...|++++|+..++++++..|. ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4566777888888888888888888776 22 336677888888888999999999999999999998 8888899999
Q ss_pred hhhhc-CCchHHHHHHHHHHhCCCCC
Q 036340 542 MYADV-GRWDDANEVRLLMKSNNIKK 566 (579)
Q Consensus 542 ~~~~~-g~~~~A~~~~~~~~~~~~~~ 566 (579)
++... |++++|.+.+++..+.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999 99999999999987766543
No 130
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=1.9e-06 Score=77.40 Aligned_cols=211 Identities=12% Similarity=0.119 Sum_probs=157.2
Q ss_pred hhHHHHHHHHhhcCCCCchHHHHHHHHhhhcC--CHHHHHHHHHhcc--CCCCeeeHHHHHHHH----Hhc---CChHHH
Q 036340 347 HLGMQIHQMVTKTVIPDVPINNALITMYARCG--AIVEARIIFEEMK--LLKNVVSWNAMIGGC----ASH---GFATEA 415 (579)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~----~~~---~~~~~A 415 (579)
+.|....+....-.|.+..+++.-...+...+ +++++++.++.+. .+.+..+|+.-...+ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 45666677766667777788888888888888 8999999998874 334555666655544 444 788899
Q ss_pred HHHHHHhHhCCCCC-ChhhHHHHHHHhcccCcHH--HHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCC------hHHH
Q 036340 416 LELFKSMRSFKVLP-TYITFISVLSACAHAGLVE--EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR------LEDA 486 (579)
Q Consensus 416 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A 486 (579)
+.+++++.+. .| +..+|..-...+...|.++ +++++++++++. .+-+...|..-..++.+.|+ ++++
T Consensus 130 L~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 130 FDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 9999999863 45 4447777666777778777 889999988864 13366777766667767666 8888
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHhhcCC-HHHHHHHHHHHhhcC---CCCCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 487 MDLIKGM-PFEP-DKAVWGALLGACRVHNN-VELAQVAAEALMKVE---PENSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 487 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
++.++++ ...| |...|+.+...+.+.|. .+....+.+++.+++ |.++.++..++.+|.+.|+.++|.++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8888776 3344 78888888888877776 444667788777765 7778888899999999999999999999887
Q ss_pred h
Q 036340 561 S 561 (579)
Q Consensus 561 ~ 561 (579)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=7.2e-08 Score=87.69 Aligned_cols=159 Identities=11% Similarity=-0.013 Sum_probs=113.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCCC-CCChh----hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC----cchhHH
Q 036340 402 MIGGCASHGFATEALELFKSMRSFKV-LPTYI----TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR----IEHFAS 472 (579)
Q Consensus 402 l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 472 (579)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..+++++....-.++ ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888775321 12211 2234556677778888888888888763111222 225778
Q ss_pred HHHHhhccCChHHHHHHHHhCC-----C---CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC------CCCch
Q 036340 473 LVDIVGRHGRLEDAMDLIKGMP-----F---EP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN------STPYV 537 (579)
Q Consensus 473 l~~~~~~~g~~~~A~~~~~~~~-----~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 537 (579)
++.+|...|++++|...++++- . .+ ...++..++..|...|++++|+..+++++++.+.. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888899888888887761 1 11 23377888899999999999999999998765443 34578
Q ss_pred hhhhhhhhcCC-chHHHHHHHHHH
Q 036340 538 LLYNMYADVGR-WDDANEVRLLMK 560 (579)
Q Consensus 538 ~l~~~~~~~g~-~~~A~~~~~~~~ 560 (579)
.++.+|...|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 89999999995 699999988774
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.76 E-value=2.7e-08 Score=78.15 Aligned_cols=113 Identities=6% Similarity=-0.001 Sum_probs=79.6
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PF-EPDKAVWGALLGAC 509 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~ 509 (579)
.+..+...+...|++++|...+++++. ..| +...+..++.++...|++++|...++++ .. +.+...+..++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 555566666666666666666666653 233 4556666666666777777777666665 22 23566777888888
Q ss_pred hhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCC
Q 036340 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548 (579)
Q Consensus 510 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 548 (579)
...|++++|+..++++++..|.+..++..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888889999999999888888888888888888777663
No 133
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.75 E-value=3.9e-07 Score=88.83 Aligned_cols=357 Identities=10% Similarity=-0.023 Sum_probs=203.9
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCC-HHHHHHHHHhcCC------CCh
Q 036340 161 AYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGD-VVSAREIFEQMLE------RDT 233 (579)
Q Consensus 161 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~------~~~ 233 (579)
+|...+..+-. |+++.+..+|++... ..|+...|...+....+.++ .+....+|+..+. .+.
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~----------~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~ 85 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLK----------KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSY 85 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHST----------TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhc----------cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccH
Confidence 45555555544 889999999999872 25788899888888777663 3445566665532 244
Q ss_pred hHHHHHHHHHH----hcCChHHHHHHhhcCCC-CCh---hhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHH
Q 036340 234 FSWNTMISGYI----HVLDMEEASNLFVKMPH-PDT---LTWNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGC 305 (579)
Q Consensus 234 ~~~~~l~~~~~----~~~~~~~a~~~~~~~~~-~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 305 (579)
..|...+..+. ..++.+.+..+|+++.. |.. ..|...... ....+...+.+++.+ .
T Consensus 86 ~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~---------------~ 149 (493)
T 2uy1_A 86 GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGD---------------T 149 (493)
T ss_dssp HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHH---------------H
Confidence 56666665543 23456667777776652 211 111111111 111112222222221 1
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCC--C--c---hhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcC
Q 036340 306 ETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGI--V--D---LHLGMQIHQMVTKTVIPDVPINNALITMYARCG 378 (579)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~--~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 378 (579)
.+.+..|..+++.+...-...+...|...+.--... + + .+.+..+++......+.++.+|...+..+.+.|
T Consensus 150 --~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~ 227 (493)
T 2uy1_A 150 --LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG 227 (493)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT
T ss_pred --hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 122333444444443210011223344433322111 1 1 234556777755566777888998899899999
Q ss_pred CHHHHHHHHHhcc-CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCC---------CCC-C--hhhHHHHHHHhcccC
Q 036340 379 AIVEARIIFEEMK-LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFK---------VLP-T--YITFISVLSACAHAG 445 (579)
Q Consensus 379 ~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~p-~--~~~~~~l~~~~~~~~ 445 (579)
+.+.|..++++.. . |....... .|....+.++. ++.+.+.- ..+ . ...|...+....+.+
T Consensus 228 ~~~~ar~i~erAi~~-P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~ 300 (493)
T 2uy1_A 228 QKEKAKKVVERGIEM-SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR 300 (493)
T ss_dssp CHHHHHHHHHHHHHH-CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC-CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence 9999999999864 4 54432211 22222122222 22222110 011 1 134566666666778
Q ss_pred cHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccC-ChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 036340 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG-RLEDAMDLIKGM--PFEPDKAVWGALLGACRVHNNVELAQVAA 522 (579)
Q Consensus 446 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 522 (579)
+.+.|..+|+++ +. . ..+...|...+..-...+ +.+.|..+|+.. ..+.++..|...+......|+.+.|..+|
T Consensus 301 ~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 301 GLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp CHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 899999999988 32 1 123445544444333344 699999999877 23224556777777778899999999999
Q ss_pred HHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 523 EALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 523 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
+++. .....|...+..-...|+.+.+..++++..
T Consensus 378 er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 378 KRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9983 334456676666777899999999888775
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.74 E-value=1.2e-08 Score=78.44 Aligned_cols=97 Identities=13% Similarity=0.011 Sum_probs=80.1
Q ss_pred chhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhh
Q 036340 468 EHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545 (579)
Q Consensus 468 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 545 (579)
..+..++..+.+.|++++|+..++++ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556777888888999998888887 3344 677888888889999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhCCC
Q 036340 546 VGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~~ 564 (579)
.|++++|...++++.+...
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 9999999999998876543
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.73 E-value=1.8e-08 Score=93.45 Aligned_cols=124 Identities=12% Similarity=0.064 Sum_probs=98.7
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC----------------cchhHHHHHHhhccCChHHHHHHHHhC-CC
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR----------------IEHFASLVDIVGRHGRLEDAMDLIKGM-PF 495 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 495 (579)
.+..+...+...|++++|+..|++++.. .|+ ...+..++.+|.+.|++++|+..++++ ..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555666666667777777766666543 232 367888888999999999999998887 33
Q ss_pred CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHH-HHHHHHH
Q 036340 496 EP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDA-NEVRLLM 559 (579)
Q Consensus 496 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 559 (579)
.| +...+..+..++...|++++|+..|+++++++|++..++..++.++...|++++| ...++.|
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34 6788899999999999999999999999999999999999999999999999998 4455554
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.73 E-value=3.2e-08 Score=77.42 Aligned_cols=117 Identities=11% Similarity=0.025 Sum_probs=89.7
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036340 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGAC 509 (579)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 509 (579)
..+..+...+...|++++|...+++++.. .+.+...+..++.++...|++++|...+++. ...| +...+..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 35666666777778888888887777653 1235566777777778888888888877776 2233 567888888888
Q ss_pred hhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCch
Q 036340 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWD 550 (579)
Q Consensus 510 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 550 (579)
...|++++|...++++++..|+++.++..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998888888888888888753
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=1.2e-08 Score=81.74 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=88.2
Q ss_pred HHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcC
Q 036340 453 HFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVE 529 (579)
Q Consensus 453 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 529 (579)
.+++++ .+.| +...+..++..+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..|+++++++
T Consensus 9 ~~~~al---~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLN---EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHT---TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHH---cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344444 3445 4566777888888999999999998887 3334 77788888888899999999999999999999
Q ss_pred CCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 530 PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 530 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
|+++.++..++.+|...|++++|.+.+++..+...
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999988876543
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=3.5e-07 Score=83.16 Aligned_cols=160 Identities=8% Similarity=-0.066 Sum_probs=120.7
Q ss_pred HHHHHhhhcCCHHHHHHHHHhccC-CC---Ce----eeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC-C----hhhHH
Q 036340 369 ALITMYARCGAIVEARIIFEEMKL-LK---NV----VSWNAMIGGCASHGFATEALELFKSMRSFKVLP-T----YITFI 435 (579)
Q Consensus 369 ~l~~~~~~~~~~~~A~~~~~~~~~-~~---~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~----~~~~~ 435 (579)
..+..+...|++++|..++++... .+ +. ..+..+...+...+++++|+..+++..+..... + ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999998752 12 11 123346666777889999999999998743222 2 12688
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHhhC----CCC-CcchhHHHHHHhhccCChHHHHHHHHhC-------CCCCC-HHHH
Q 036340 436 SVLSACAHAGLVEEGRQHFKSMVNEYG----IEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-------PFEPD-KAVW 502 (579)
Q Consensus 436 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~ 502 (579)
.+...|...|++++|..+++++++... ..+ ...++..++.+|.+.|++++|...+++. ...+. ...+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999999875321 112 2347788999999999999999998876 12222 5688
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHHHhhc
Q 036340 503 GALLGACRVHN-NVELAQVAAEALMKV 528 (579)
Q Consensus 503 ~~l~~~~~~~~-~~~~A~~~~~~~~~~ 528 (579)
..++.++...| ++++|...+++++.+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88999999999 569999999999864
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=5e-08 Score=75.53 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=82.2
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 036340 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-P-FEPDKAVWGALLGAC 509 (579)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~ 509 (579)
..+..+...+...|++++|..++++++.. .+.+...+..++.++.+.|++++|...++++ . .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 35666666777777777777777777653 1234556667777777777777777777766 2 233566778888888
Q ss_pred hhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcC
Q 036340 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVG 547 (579)
Q Consensus 510 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 547 (579)
...|++++|...++++++..|+++.++..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999888888877777777766544
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=2.7e-07 Score=83.91 Aligned_cols=164 Identities=7% Similarity=-0.094 Sum_probs=122.1
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCCe-------eeHHHHHHHHHhcCChHHHHHHHHHhHhCCC---CCC--h
Q 036340 365 PINNALITMYARCGAIVEARIIFEEMK-LLKNV-------VSWNAMIGGCASHGFATEALELFKSMRSFKV---LPT--Y 431 (579)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~ 431 (579)
..+...+..+...|++++|.+.+.+.. ..+.. ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344567778889999999999987653 22221 1234456667788999999999999875321 121 3
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC-----cchhHHHHHHhhccCChHHHHHHHHhC-C------CCC-C
Q 036340 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR-----IEHFASLVDIVGRHGRLEDAMDLIKGM-P------FEP-D 498 (579)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~~-~ 498 (579)
.+++.+...|...|++++|..+++++++.....|+ ..++..++.+|...|++++|+..+++. . ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 37888889999999999999999998732211222 257889999999999999999999876 1 111 2
Q ss_pred HHHHHHHHHHHhhcCCHHHH-HHHHHHHhhc
Q 036340 499 KAVWGALLGACRVHNNVELA-QVAAEALMKV 528 (579)
Q Consensus 499 ~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 528 (579)
..++..++.++...|++++| ...+++++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788889999999999999 7889988753
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.69 E-value=2.5e-08 Score=77.53 Aligned_cols=91 Identities=12% Similarity=0.020 Sum_probs=46.4
Q ss_pred HHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCC
Q 036340 471 ASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGR 548 (579)
Q Consensus 471 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 548 (579)
..++..+.+.|++++|+..|++. ...| +...|..++.++...|++++|+..++++++++|+++.++..++.++...|+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence 33444444444444444444443 1122 344555555555555555555555555555555555555555555555555
Q ss_pred chHHHHHHHHHHh
Q 036340 549 WDDANEVRLLMKS 561 (579)
Q Consensus 549 ~~~A~~~~~~~~~ 561 (579)
+++|...+++..+
T Consensus 88 ~~~A~~~~~~al~ 100 (126)
T 3upv_A 88 YASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=5.4e-08 Score=87.66 Aligned_cols=92 Identities=12% Similarity=0.015 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHH
Q 036340 125 LSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVS 204 (579)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (579)
+..+...+...|++++|+..|++++. ..|.+...+..++.++...|++++|...++++.. . -+.+...
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------~-~p~~~~~ 74 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--------L-DGQSVKA 74 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--------S-CTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------h-CCCCHHH
Confidence 33344444444555555555554444 2233444444555555555555555555554441 1 0223444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc
Q 036340 205 WNSMIMCYAKAGDVVSAREIFEQM 228 (579)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~ 228 (579)
+..++.++...|++++|...|++.
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444455555555555555555444
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.64 E-value=3.1e-08 Score=76.99 Aligned_cols=91 Identities=11% Similarity=0.006 Sum_probs=47.3
Q ss_pred HHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC-------Cchhhhh
Q 036340 471 ASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST-------PYVLLYN 541 (579)
Q Consensus 471 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~ 541 (579)
..++..+.+.|++++|+..|++. ...| +...|..++.++...|++++|+..+++++++.|++.. +|..++.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34444455555555555555444 2222 3445555555555556666666666666555555443 2344455
Q ss_pred hhhhcCCchHHHHHHHHHHh
Q 036340 542 MYADVGRWDDANEVRLLMKS 561 (579)
Q Consensus 542 ~~~~~g~~~~A~~~~~~~~~ 561 (579)
++...|++++|.+.+++..+
T Consensus 92 ~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 55555566666666555543
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.62 E-value=3.1e-07 Score=78.21 Aligned_cols=127 Identities=12% Similarity=0.030 Sum_probs=57.9
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhh---CCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-C---CCC-C----H
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEY---GIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-P---FEP-D----K 499 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~-~----~ 499 (579)
++..+...+...|++++|...+++.+... +..| ....+..++.++...|++++|...+++. . ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 44444444444555555555544443311 0111 1233444445555555555555554443 0 011 1 1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC------CCchhhhhhhhhcCCchHHHHHHHHH
Q 036340 500 AVWGALLGACRVHNNVELAQVAAEALMKVEPENS------TPYVLLYNMYADVGRWDDANEVRLLM 559 (579)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (579)
..+..+...+...|++++|...++++++..+... .++..++.++...|++++|...+++.
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 2344445555555666666666655554321111 11345555666666666666655544
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.62 E-value=4.1e-08 Score=80.50 Aligned_cols=107 Identities=13% Similarity=0.007 Sum_probs=92.7
Q ss_pred hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036340 431 YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLG 507 (579)
Q Consensus 431 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 507 (579)
...+..+...+...|++++|+..|++.++. .| +...+..++.+|.+.|++++|+..+++. ...| +...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 447888888999999999999999999864 44 6788899999999999999999999987 3344 6789999999
Q ss_pred HHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhh
Q 036340 508 ACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540 (579)
Q Consensus 508 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 540 (579)
++...|++++|+..|+++++++|+++..+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999988655544
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.61 E-value=4.4e-08 Score=77.97 Aligned_cols=101 Identities=12% Similarity=0.034 Sum_probs=83.1
Q ss_pred CCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhh
Q 036340 463 IEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539 (579)
Q Consensus 463 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 539 (579)
..| +...+..++..+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..|+++++++|+++.++..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 344 4556677788888899999999988887 3334 677888888888889999999999999999999998888999
Q ss_pred hhhhhhcCCchHHHHHHHHHHhCC
Q 036340 540 YNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
+.+|...|++++|.+.+++..+..
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999998876554
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.61 E-value=9.9e-08 Score=75.39 Aligned_cols=100 Identities=6% Similarity=-0.112 Sum_probs=63.5
Q ss_pred ChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036340 430 TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLG 507 (579)
Q Consensus 430 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 507 (579)
+...+..+...+...|++++|...|+..+.. .+.+...+..++.++...|++++|...+++. ...| +...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3446666666777777777777777776643 1224556666666666777777776666665 2223 4556666666
Q ss_pred HHhhcCCHHHHHHHHHHHhhcCCC
Q 036340 508 ACRVHNNVELAQVAAEALMKVEPE 531 (579)
Q Consensus 508 ~~~~~~~~~~A~~~~~~~~~~~p~ 531 (579)
++...|++++|+..|+++++..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 666667777777777777666665
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=1.4e-07 Score=80.17 Aligned_cols=96 Identities=10% Similarity=-0.070 Sum_probs=72.0
Q ss_pred chhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhh
Q 036340 468 EHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545 (579)
Q Consensus 468 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 545 (579)
..+..++.++...|++++|+..+++. ...| +...+..++.++...|++++|+..|++++++.|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56677888888888888888888876 3333 677888889999999999999999999999999999999999999999
Q ss_pred cCCchHHH-HHHHHHHhCC
Q 036340 546 VGRWDDAN-EVRLLMKSNN 563 (579)
Q Consensus 546 ~g~~~~A~-~~~~~~~~~~ 563 (579)
.|+.+++. ..++.+...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88888887 5555554433
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.56 E-value=1.5e-07 Score=71.94 Aligned_cols=107 Identities=13% Similarity=0.043 Sum_probs=60.7
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036340 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGAC 509 (579)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 509 (579)
..+..+...+...|++++|...++..+.. .+.+...+..++.++...|++++|...+++. ...| +...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555556666666666666666666543 1224455555666666666666666666554 2222 445555555666
Q ss_pred hhcCCHHHHHHHHHHHhhcCCCCCCCchhhh
Q 036340 510 RVHNNVELAQVAAEALMKVEPENSTPYVLLY 540 (579)
Q Consensus 510 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 540 (579)
...|++++|...++++++..|+++.++..++
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666666666666666666666554444443
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.56 E-value=1.9e-07 Score=77.57 Aligned_cols=124 Identities=11% Similarity=0.076 Sum_probs=87.6
Q ss_pred hcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HhhcCCH--
Q 036340 441 CAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGA-CRVHNNV-- 515 (579)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~-~~~~~~~-- 515 (579)
+...|++++|...++..+.. .+.+...+..++.++...|++++|...++++ ...| +...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45667788888888777654 1235567777888888888888888888776 2223 56677777777 6677777
Q ss_pred HHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCC
Q 036340 516 ELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566 (579)
Q Consensus 516 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 566 (579)
++|+..++++++.+|+++.++..++.+|...|++++|...++++.+.....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 888888888888888887778888888888888888888888877665443
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.56 E-value=1.8e-07 Score=73.27 Aligned_cols=99 Identities=13% Similarity=0.065 Sum_probs=89.1
Q ss_pred CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhh
Q 036340 466 RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 543 (579)
+...+..++..+...|++++|...+++. ...| +...+..++..+...|++++|+..++++++..|.++.++..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4567788899999999999999999987 4444 7788999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhCCC
Q 036340 544 ADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~~~ 564 (579)
...|++++|.+.+++..+...
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHhhHHHHHHHHHHHHHhCC
Confidence 999999999999999876543
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=2.8e-07 Score=70.38 Aligned_cols=96 Identities=9% Similarity=0.102 Sum_probs=63.2
Q ss_pred chhHHHHHHhhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhh
Q 036340 468 EHFASLVDIVGRHGRLEDAMDLIKGM-PFE-PDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545 (579)
Q Consensus 468 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 545 (579)
..+..++..+...|++++|...+++. ... .+...+..++..+...|++++|...++++++..|+++.++..++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34455666666777777777776665 222 2556666666666667777777777777777777766666777777777
Q ss_pred cCCchHHHHHHHHHHhCC
Q 036340 546 VGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~ 563 (579)
.|++++|.+.+++..+..
T Consensus 85 ~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp TTCHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHHHHcC
Confidence 777777777777666543
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=4.2e-07 Score=72.80 Aligned_cols=108 Identities=9% Similarity=-0.015 Sum_probs=64.5
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC----cchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR----IEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALL 506 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 506 (579)
.+..+...+...|++++|...|++.++ ..|+ ...+..++.++...|++++|+..+++. ...| +...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 444555555555666666665555542 2333 344555555666666666666665554 2222 455666677
Q ss_pred HHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhh
Q 036340 507 GACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543 (579)
Q Consensus 507 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 543 (579)
.++...|++++|...++++++..|+++.++..+..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777777777777777777777777766555554443
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=2.7e-07 Score=73.94 Aligned_cols=99 Identities=10% Similarity=0.026 Sum_probs=89.2
Q ss_pred CcchhHHHHHHhhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhh
Q 036340 466 RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPD----KAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLY 540 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 540 (579)
+...+..++..+...|++++|...+++. ...|+ ...+..+..++...|++++|+..++++++..|+++.++..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4567788889999999999999999987 56676 678888889999999999999999999999999999999999
Q ss_pred hhhhhcCCchHHHHHHHHHHhCCC
Q 036340 541 NMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 541 ~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
.++...|++++|...+++..+...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999887553
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=2.6e-07 Score=75.58 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=74.1
Q ss_pred CeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHH
Q 036340 395 NVVSWNAMIGGCASHGFATEALELFKSMRSFKVLP-TYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFAS 472 (579)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 472 (579)
+...+..+...+...|++++|+..|++..+. .| +...+..+..+|...|++++|+..++++++. .| +...+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3445777888888888888888888888864 45 4457778888888888888888888888754 34 5677888
Q ss_pred HHHHhhccCChHHHHHHHHhC
Q 036340 473 LVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 473 l~~~~~~~g~~~~A~~~~~~~ 493 (579)
++.++...|++++|...|++.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 888888888888888888876
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.52 E-value=4.8e-07 Score=77.05 Aligned_cols=154 Identities=12% Similarity=-0.047 Sum_probs=95.6
Q ss_pred hcCCHHHHHHHHHhccCC--CCeeeHHHHHHHHHhcCChHHHHHHHHHhHh----CCCCCC-hhhHHHHHHHhcccCcHH
Q 036340 376 RCGAIVEARIIFEEMKLL--KNVVSWNAMIGGCASHGFATEALELFKSMRS----FKVLPT-YITFISVLSACAHAGLVE 448 (579)
Q Consensus 376 ~~~~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~~~~~ 448 (579)
..|++++|.+.++.+... .....+..+...+...|++++|+..+++..+ .+..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 456777777733322212 2344566777777777888877777777654 122222 235666777777888888
Q ss_pred HHHHHHHHhHHhhCCCC-C----cchhHHHHHHhhccCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCCH
Q 036340 449 EGRQHFKSMVNEYGIEP-R----IEHFASLVDIVGRHGRLEDAMDLIKGM----PFEPD----KAVWGALLGACRVHNNV 515 (579)
Q Consensus 449 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~ 515 (579)
+|...+++.+......+ + ...+..++.++...|++++|...+++. ...++ ..++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888877665322122 1 234667777788888888888777765 11112 22456677778888888
Q ss_pred HHHHHHHHHHhhcC
Q 036340 516 ELAQVAAEALMKVE 529 (579)
Q Consensus 516 ~~A~~~~~~~~~~~ 529 (579)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887643
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.9e-07 Score=72.52 Aligned_cols=108 Identities=7% Similarity=-0.034 Sum_probs=73.7
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACR 510 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 510 (579)
.+..+...+...|++++|+..|++.++. .+.+...+..++.++.+.|++++|+..+++. ...| +...|..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4555566667777777777777776643 1224566677777777777777777777766 3333 5667777888888
Q ss_pred hcCCHHHHHHHHHHHhhcC------CCCCCCchhhhhh
Q 036340 511 VHNNVELAQVAAEALMKVE------PENSTPYVLLYNM 542 (579)
Q Consensus 511 ~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 542 (579)
..|++++|+..|+++++++ |.+..++..+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 8888888888888888888 6665555544443
No 158
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.50 E-value=1.8e-07 Score=86.69 Aligned_cols=148 Identities=9% Similarity=-0.018 Sum_probs=78.2
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHh
Q 036340 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477 (579)
Q Consensus 398 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 477 (579)
.+..+...+.+.|++++|+..|++.... .|+... +...++++++...+. ...+..++.+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 3555566666677777777777776642 344321 223334444332221 13678899999
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhh-hhhcCCchHHHH
Q 036340 478 GRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM-YADVGRWDDANE 554 (579)
Q Consensus 478 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~ 554 (579)
.+.|++++|+..+++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..|..+ ....+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 3344 778999999999999999999999999999999999999998887 445677888889
Q ss_pred HHHHHHhCCCC
Q 036340 555 VRLLMKSNNIK 565 (579)
Q Consensus 555 ~~~~~~~~~~~ 565 (579)
.++++......
T Consensus 321 ~~~~~l~~~p~ 331 (338)
T 2if4_A 321 MYKGIFKGKDE 331 (338)
T ss_dssp -----------
T ss_pred HHHHhhCCCCC
Confidence 99988765543
No 159
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.49 E-value=1.7e-07 Score=73.17 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=60.8
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC-c---chhHHHHHHhhccCChHHHHHHHHhC-CCCC-C---HHHHHHH
Q 036340 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR-I---EHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-D---KAVWGAL 505 (579)
Q Consensus 435 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~---~~~~~~l 505 (579)
..+...+...|++++|...|+.+++. .|+ . ..+..++.++...|++++|...++++ ...| + ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 34455666777777777777777654 232 2 35566666777777777777776665 2223 2 4456666
Q ss_pred HHHHhhcCCHHHHHHHHHHHhhcCCCCCC
Q 036340 506 LGACRVHNNVELAQVAAEALMKVEPENST 534 (579)
Q Consensus 506 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 534 (579)
+.++...|++++|+..|+++++..|+++.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 66666777777777777777777766543
No 160
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=3e-07 Score=71.00 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=87.5
Q ss_pred cchhHHHHHHhhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhh
Q 036340 467 IEHFASLVDIVGRHGRLEDAMDLIKGM-P-FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYA 544 (579)
Q Consensus 467 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 544 (579)
...+..++..+...|++++|...++++ . .+.+...+..++..+...|++++|+..++++.+..|.++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 466788889999999999999999987 2 23467788999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCC
Q 036340 545 DVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 545 ~~g~~~~A~~~~~~~~~~~~ 564 (579)
..|++++|...++++.+...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999876553
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.46 E-value=1.6e-07 Score=74.07 Aligned_cols=105 Identities=13% Similarity=0.031 Sum_probs=55.5
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCC-CHHHHHHHHHHHhh
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP-DKAVWGALLGACRV 511 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~ 511 (579)
.+......+...|++++|+..|++.++-..-.|+.. .....| +...|..+..++.+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-----------------------a~~~~~~~a~a~~n~g~al~~ 69 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-----------------------AFDHAGFDAFCHAGLAEALAG 69 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-----------------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-----------------------hhhhccchHHHHHHHHHHHHH
Confidence 455566677788888888888888875422211110 000000 12244555555555
Q ss_pred cCCHHHHHHHHHHHhhc-------CCCCCCCc----hhhhhhhhhcCCchHHHHHHHHHH
Q 036340 512 HNNVELAQVAAEALMKV-------EPENSTPY----VLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 512 ~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
.|++++|+..+++++++ +|++..+| +..+.++...|++++|++.|++..
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555 55555555 555555555555555555555543
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=1.2e-06 Score=66.07 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=69.7
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP---DKAVWGALLGA 508 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~ 508 (579)
.+..+...+...|++++|...++++++. .+.+...+..++.++...|++++|...+++. ...| +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 5555666666777777777777776643 1224556667777777777777777777765 2223 46677888888
Q ss_pred Hhhc-CCHHHHHHHHHHHhhcCCCCC
Q 036340 509 CRVH-NNVELAQVAAEALMKVEPENS 533 (579)
Q Consensus 509 ~~~~-~~~~~A~~~~~~~~~~~p~~~ 533 (579)
+... |++++|+..++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888888764
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=3.1e-06 Score=81.88 Aligned_cols=190 Identities=7% Similarity=-0.063 Sum_probs=135.8
Q ss_pred HHHhhhcCCHHHHHHHHHhcc-CCCC---e---------------eeHHHHHHHHHhcCChHHHHHHHHHhHhCCC-CCC
Q 036340 371 ITMYARCGAIVEARIIFEEMK-LLKN---V---------------VSWNAMIGGCASHGFATEALELFKSMRSFKV-LPT 430 (579)
Q Consensus 371 ~~~~~~~~~~~~A~~~~~~~~-~~~~---~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~ 430 (579)
+..+.+.|++++|.+.|..+. ..|+ . .++..++..|...|++++|.+.+.++...-- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 445667788888888887763 1111 1 1266788899999999999999988764211 111
Q ss_pred h----hhHHHHHHHhcccCcHHHHHHHHHHhHHhh---CCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-------CC
Q 036340 431 Y----ITFISVLSACAHAGLVEEGRQHFKSMVNEY---GIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-------PF 495 (579)
Q Consensus 431 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~ 495 (579)
. .+.+.+...+...|+++.|..+++...... +..+ ...++..++..|...|++++|..+++++ ..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 133444456677899999999988775432 2222 2456778999999999999999998876 12
Q ss_pred CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC-------CCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 496 EP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS-------TPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 496 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
++ ....+..++..|...|++++|...+++++...|... ..+..++..+...|++++|...+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 23 245778888999999999999999999987543322 235677788889999999998887664
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.44 E-value=7.1e-07 Score=86.51 Aligned_cols=127 Identities=12% Similarity=0.061 Sum_probs=90.8
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-------------CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-------------RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP- 497 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~- 497 (579)
.+..+...+.+.|++++|+..|+++++.....+ ....|..++.+|.+.|++++|+..++++ ...|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 444455555555556666555555554211111 1467788888899999999999988887 3334
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHH-HHHH
Q 036340 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEV-RLLM 559 (579)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~ 559 (579)
+...|..+..++...|++++|+..|+++++++|++..++..++.++...|++++|... ++.|
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999999999999999999999999999999999999888643 4443
No 165
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.44 E-value=3.7e-07 Score=71.22 Aligned_cols=99 Identities=11% Similarity=0.025 Sum_probs=88.2
Q ss_pred CcchhHHHHHHhhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhh
Q 036340 466 RIEHFASLVDIVGRHGRLEDAMDLIKGM-PF-EPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 543 (579)
+...+..++..+...|++++|...+++. .. +.+...+..++..+...|++++|+..++++++..|+++.++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4566778888999999999999999987 33 347788899999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhCCC
Q 036340 544 ADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~~~ 564 (579)
...|++++|...+++..+...
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999887653
No 166
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.43 E-value=1.6e-06 Score=70.97 Aligned_cols=127 Identities=9% Similarity=-0.010 Sum_probs=80.5
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHh
Q 036340 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIV 477 (579)
Q Consensus 398 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 477 (579)
.+..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...+++.+.. .+.+...+..++.++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 35556666667777777777777766532 223446666666777777777777777777653 122456667777777
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHHHHHHHH--HHHhhcCCHHHHHHHHHHHhh
Q 036340 478 GRHGRLEDAMDLIKGM-PFEP-DKAVWGALL--GACRVHNNVELAQVAAEALMK 527 (579)
Q Consensus 478 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~ 527 (579)
...|++++|...++++ ...| +...+..+. ..+...|++++|+..+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7777777777777765 2223 444443333 336667888888888877764
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.41 E-value=5.2e-07 Score=69.20 Aligned_cols=98 Identities=19% Similarity=0.172 Sum_probs=68.5
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGAC 509 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 509 (579)
.+..+...+...|++++|+..++++++. .| +...+..++.++...|++++|+..+++. ...| +...+..+..++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445556667777888888877777653 34 5667777777778888888888877776 3344 566788888888
Q ss_pred hhcCCHHHHHHHHHHHhhcCCCCC
Q 036340 510 RVHNNVELAQVAAEALMKVEPENS 533 (579)
Q Consensus 510 ~~~~~~~~A~~~~~~~~~~~p~~~ 533 (579)
...|++++|+..++++++.+|+++
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCC
Confidence 888899999999999988888764
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.40 E-value=3.5e-07 Score=89.05 Aligned_cols=118 Identities=9% Similarity=-0.008 Sum_probs=89.3
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC
Q 036340 437 VLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHN 513 (579)
Q Consensus 437 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~ 513 (579)
+...+...|++++|.+.++++++. .| +...+..++.+|.+.|++++|+..++++ ...| +...+..++.++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344566778888888888887754 34 4677778888888888888888888776 3344 5678888888888889
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCchhhhhh--hhhcCCchHHHHHHH
Q 036340 514 NVELAQVAAEALMKVEPENSTPYVLLYNM--YADVGRWDDANEVRL 557 (579)
Q Consensus 514 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 557 (579)
++++|+..++++++..|++..++..++.+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999998888888888888777 788888898888887
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=5.2e-07 Score=71.14 Aligned_cols=97 Identities=8% Similarity=-0.026 Sum_probs=64.4
Q ss_pred CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhh
Q 036340 466 RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 543 (579)
+...+..++..+...|++++|...+++. ...| +...+..++.++...|++++|+..++++++.+|+++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4555666666677777777777776665 2223 4556666666666777777777777777777777666677777777
Q ss_pred hhcCCchHHHHHHHHHHhC
Q 036340 544 ADVGRWDDANEVRLLMKSN 562 (579)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~ 562 (579)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 7777777777777666543
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.38 E-value=3.6e-07 Score=72.02 Aligned_cols=113 Identities=11% Similarity=-0.074 Sum_probs=80.2
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCh-------------hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCC
Q 036340 398 SWNAMIGGCASHGFATEALELFKSMRSFKVLPTY-------------ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIE 464 (579)
Q Consensus 398 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 464 (579)
.+......+.+.|++++|+..|++.++. .|+. ..|..+..++...|++++|+..+++.+.-
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l---- 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY---- 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 4566778889999999999999999964 5551 14444445555555555555555544321
Q ss_pred CCcchhHHHHHHhhccCChHHHHHHHHh-CCCCCC-HHHH----HHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchh
Q 036340 465 PRIEHFASLVDIVGRHGRLEDAMDLIKG-MPFEPD-KAVW----GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVL 538 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 538 (579)
|.+ .+..|+ ...| .....++...|++++|+..|++++++.|++..+...
T Consensus 87 -------------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 87 -------------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp -------------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred -------------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 111 123664 5577 888999999999999999999999999999887766
Q ss_pred hhh
Q 036340 539 LYN 541 (579)
Q Consensus 539 l~~ 541 (579)
+..
T Consensus 142 ~~~ 144 (159)
T 2hr2_A 142 KER 144 (159)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 171
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.38 E-value=6.7e-05 Score=68.16 Aligned_cols=169 Identities=9% Similarity=0.020 Sum_probs=77.2
Q ss_pred CCCchHHHHHHHHHHHcCCCCCh-hhHHHHHHhccCCC-chhhHHHHHHHHhhcCCCCchHHHHHHHHhhhc-C-CHHHH
Q 036340 308 NKDYEGAIKLFIQMQVEGEKPDR-HTFSSILSMSSGIV-DLHLGMQIHQMVTKTVIPDVPINNALITMYARC-G-AIVEA 383 (579)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A 383 (579)
.+..++|++++++++... |+. ..++.--..+...+ .++.+..+++......+.+..+++....++... + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 344455666666665532 222 22222222222223 244444444443344444444555444444444 4 55566
Q ss_pred HHHHHhcc--CCCCeeeHHHHHHHHHhcCChH--------HHHHHHHHhHhCCCCCChhhHHHHHHHhcccCc-------
Q 036340 384 RIIFEEMK--LLKNVVSWNAMIGGCASHGFAT--------EALELFKSMRSFKVLPTYITFISVLSACAHAGL------- 446 (579)
Q Consensus 384 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------- 446 (579)
+++++.+. .+.+..+|+--..++.+.|.++ ++++.++++.+.. .-|...|+.....+...+.
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 66665553 2223344444444443333333 6666666666432 2233355555444444443
Q ss_pred HHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCC
Q 036340 447 VEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGR 482 (579)
Q Consensus 447 ~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 482 (579)
++++++.+++++.. .| |...|..+-..+.+.|+
T Consensus 224 ~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 224 LQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 45566666555532 33 44455444444444443
No 172
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.37 E-value=1.2e-05 Score=73.12 Aligned_cols=213 Identities=12% Similarity=0.089 Sum_probs=152.3
Q ss_pred chhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcC-CHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhc-C-ChHHHHHHH
Q 036340 345 DLHLGMQIHQMVTKTVIPDVPINNALITMYARCG-AIVEARIIFEEMK--LLKNVVSWNAMIGGCASH-G-FATEALELF 419 (579)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~ 419 (579)
..+.|..+.+......+.+..+++.....+...| .+++++.+++.+. .+.+..+|+.-...+.+. + +++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3456777777777777788888888888888888 5999999999875 334556777777777666 6 889999999
Q ss_pred HHhHhCCCCC-ChhhHHHHHHHhcccCcHH--------HHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCC-------h
Q 036340 420 KSMRSFKVLP-TYITFISVLSACAHAGLVE--------EGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGR-------L 483 (579)
Q Consensus 420 ~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~ 483 (579)
+++.+ ..| |..+|..-...+...|.++ +++++++++++. .+-+...|+....++.+.++ +
T Consensus 149 ~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 149 HGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHH
Confidence 99995 355 4447776666666666666 899999999865 23367788888888877776 6
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCH--------------------HHHHHHHHHHhhcC------CCCCCC
Q 036340 484 EDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNV--------------------ELAQVAAEALMKVE------PENSTP 535 (579)
Q Consensus 484 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~~~~~~------p~~~~~ 535 (579)
+++++.++++ ...| |...|+.+...+.+.|.. .....+...+.... +..+.+
T Consensus 225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 7888888776 3344 788888877777665543 23333333333222 345556
Q ss_pred chhhhhhhhhcCCchHHHHHHHHHHh
Q 036340 536 YVLLYNMYADVGRWDDANEVRLLMKS 561 (579)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (579)
+..|+.+|.+.|+.++|.++++.+.+
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 88999999999999999999999864
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.36 E-value=1.3e-07 Score=72.22 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=55.7
Q ss_pred ccCcHHHHHHHHHHhHHhhCC-CC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH
Q 036340 443 HAGLVEEGRQHFKSMVNEYGI-EP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELA 518 (579)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A 518 (579)
..|++++|+..|+++++. +. .| +...+..++.+|...|++++|+..++++ ...| +...+..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 356777777777777632 10 23 3456666777777777777777777666 2233 455666666777777777777
Q ss_pred HHHHHHHhhcCCCCCC
Q 036340 519 QVAAEALMKVEPENST 534 (579)
Q Consensus 519 ~~~~~~~~~~~p~~~~ 534 (579)
+..++++++..|+++.
T Consensus 81 ~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhCCCcHH
Confidence 7777777777776654
No 174
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.36 E-value=1.9e-06 Score=66.75 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCc---
Q 036340 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR--- 200 (579)
Q Consensus 124 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--- 200 (579)
++..+...+.+.|++++|++.|+++++ ..|.+..+|..++.+|...|++++|++.+++.+...+ ...+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~ 80 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR------ETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------HTTCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc------ccchhhH
Confidence 456788889999999999999999988 4567788999999999999999999999998872210 0011
Q ss_pred -chHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhH
Q 036340 201 -NIVSWNSMIMCYAKAGDVVSAREIFEQMLE--RDTFS 235 (579)
Q Consensus 201 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~ 235 (579)
-..+|..+..++...|++++|++.|++.++ +++..
T Consensus 81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence 124677788888889999999999887754 45443
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.35 E-value=2.9e-07 Score=75.20 Aligned_cols=102 Identities=11% Similarity=0.054 Sum_probs=64.9
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhHHhhC-----C----------CC-CcchhHHHHHHhhccCChHHHHHHHHhC-C
Q 036340 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYG-----I----------EP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-P 494 (579)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~----------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 494 (579)
..+......+.+.|++++|+..|++.+.... . .| +...+..++.+|.+.|++++|+..++++ .
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 3667777788888999999999888875310 0 11 2245556666666666666666666655 2
Q ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC
Q 036340 495 FEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533 (579)
Q Consensus 495 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 533 (579)
..| +...|..++.++...|++++|+..|+++++++|+++
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 233 455666666666666666666666666666666654
No 176
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.34 E-value=1.1e-07 Score=80.75 Aligned_cols=96 Identities=15% Similarity=0.020 Sum_probs=74.5
Q ss_pred hhHHHHHHhhccCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCC
Q 036340 469 HFASLVDIVGRHGRLEDAMDLIKGM-PFEP-D----------------KAVWGALLGACRVHNNVELAQVAAEALMKVEP 530 (579)
Q Consensus 469 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 530 (579)
.+..++..+...|++++|+..+++. ...| + ...+..+..++...|++++|+..++++++..|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444455555555555555555544 1111 1 36788888999999999999999999999999
Q ss_pred CCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 531 ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 531 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
+++.++..++.+|...|++++|...+++..+...
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999876543
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.34 E-value=5.9e-07 Score=84.12 Aligned_cols=90 Identities=9% Similarity=0.068 Sum_probs=78.0
Q ss_pred CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhh
Q 036340 466 RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMY 543 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 543 (579)
+...+..++.+|.+.|++++|+..++++ ...| +...+..+..++...|++++|+..|+++++++|++..++..++.++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888899999999999999999887 5555 6778889999999999999999999999999999998899999999
Q ss_pred hhcCCchHHHHH
Q 036340 544 ADVGRWDDANEV 555 (579)
Q Consensus 544 ~~~g~~~~A~~~ 555 (579)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 888888877654
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.32 E-value=2.5e-06 Score=66.25 Aligned_cols=89 Identities=16% Similarity=0.116 Sum_probs=42.6
Q ss_pred HHHHhhccCChHHHHHHHHhC-CCCC-CH---HHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC---CCCchhhhhhhh
Q 036340 473 LVDIVGRHGRLEDAMDLIKGM-PFEP-DK---AVWGALLGACRVHNNVELAQVAAEALMKVEPEN---STPYVLLYNMYA 544 (579)
Q Consensus 473 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 544 (579)
++..+...|++++|...++++ ...| +. ..+..++.++...|++++|+..++++++..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344444555555555555444 1112 11 244444444555555555555555555555554 333455555555
Q ss_pred hcCCchHHHHHHHHHHh
Q 036340 545 DVGRWDDANEVRLLMKS 561 (579)
Q Consensus 545 ~~g~~~~A~~~~~~~~~ 561 (579)
..|++++|...++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
No 179
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.32 E-value=3.2e-06 Score=78.20 Aligned_cols=127 Identities=9% Similarity=-0.012 Sum_probs=90.0
Q ss_pred eeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC----------------hhhHHHHHHHhcccCcHHHHHHHHHHhHH
Q 036340 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT----------------YITFISVLSACAHAGLVEEGRQHFKSMVN 459 (579)
Q Consensus 396 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 459 (579)
...+..+...+.+.|++++|+..|++..+. .|+ ..++..+..++...|++++|+..++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666677777777777777776643 333 25777777788888888888888888875
Q ss_pred hhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH-HHHHHHHhh
Q 036340 460 EYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELA-QVAAEALMK 527 (579)
Q Consensus 460 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~ 527 (579)
. .| +...+..++.+|...|++++|+..|+++ ...| +...+..+..++...|+.++| ...|++++.
T Consensus 225 ~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 L---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp H---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34 5677778888888888888888888776 3344 566777777888888888777 456666653
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.29 E-value=6.5e-07 Score=69.78 Aligned_cols=95 Identities=12% Similarity=0.057 Sum_probs=60.8
Q ss_pred hhHHHHHHhhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC-------CCCchhh
Q 036340 469 HFASLVDIVGRHGRLEDAMDLIKGM-P-FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN-------STPYVLL 539 (579)
Q Consensus 469 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l 539 (579)
.+..++..+...|++++|...+++. . .+.+...+..++..+...|++++|+..++++++..|.+ +.++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444555555566666666655554 1 22245566666666777777777777777777766655 5556777
Q ss_pred hhhhhhcCCchHHHHHHHHHHhCC
Q 036340 540 YNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
+.++...|++++|.+.++++.+..
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC
Confidence 777777777777777777766543
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=1.9e-06 Score=67.06 Aligned_cols=106 Identities=5% Similarity=-0.050 Sum_probs=53.2
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-C----CCCC----HHHHHH
Q 036340 434 FISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-P----FEPD----KAVWGA 504 (579)
Q Consensus 434 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~~~----~~~~~~ 504 (579)
+..+...+...|++++|...+++++.. .+.+...+..++.++...|++++|...++++ . ..++ ...+..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 333444444444444444444444432 1123334444444444555555555444443 1 1111 445666
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhh
Q 036340 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNM 542 (579)
Q Consensus 505 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 542 (579)
++.++...|++++|...++++++..| ++.....+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 66667777777777777777777766 34444444433
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.26 E-value=1.3e-06 Score=70.99 Aligned_cols=91 Identities=16% Similarity=0.076 Sum_probs=51.5
Q ss_pred hHHHHHHhhccCChHHHHHHHHhC----CCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCC------CCCC
Q 036340 470 FASLVDIVGRHGRLEDAMDLIKGM----PFEP----DKAVWGALLGACRVHNNVELAQVAAEALMKVEPE------NSTP 535 (579)
Q Consensus 470 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~ 535 (579)
+..++.++...|++++|...+++. +..+ ....+..+...+...|++++|...++++++..+. ...+
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 344444455555555555544443 0001 1234555566666677777777777776654221 1234
Q ss_pred chhhhhhhhhcCCchHHHHHHHHHH
Q 036340 536 YVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
+..++.++...|++++|.+.+++..
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6667777777777777777777664
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.26 E-value=4.4e-07 Score=74.08 Aligned_cols=93 Identities=10% Similarity=0.028 Sum_probs=57.2
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHhHhC--------CC--------CCCh-hhHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 036340 398 SWNAMIGGCASHGFATEALELFKSMRSF--------KV--------LPTY-ITFISVLSACAHAGLVEEGRQHFKSMVNE 460 (579)
Q Consensus 398 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~--------~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 460 (579)
.+...+..+.+.|++++|+..|.+.+.. .. .|.. ..|..+..+|...|++++|+..++.++..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3555666666677777777777766643 00 1222 35566666666777777777777666643
Q ss_pred hCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC
Q 036340 461 YGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 461 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 493 (579)
.| +...+..++.++...|++++|...|++.
T Consensus 93 ---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 93 ---EETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp ---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 33 4556666677777777777777766665
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.24 E-value=4.9e-07 Score=68.99 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 501 VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 501 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
.+..++.++...|++++|+..++++++..|+++.++..++.++...|++++|.+.+++..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444443
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.23 E-value=1.6e-05 Score=78.82 Aligned_cols=169 Identities=6% Similarity=-0.029 Sum_probs=134.3
Q ss_pred CCHHHHHHHHHhcc-CCC-CeeeHHHHHHHHHhcCC----------hHHHHHHHHHhHhCCCCCCh-hhHHHHHHHhccc
Q 036340 378 GAIVEARIIFEEMK-LLK-NVVSWNAMIGGCASHGF----------ATEALELFKSMRSFKVLPTY-ITFISVLSACAHA 444 (579)
Q Consensus 378 ~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 444 (579)
...++|.+.++.+. ..| +..+|+.-..++...|+ ++++++.++++.+. .|.. .+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 34567788888774 344 45567776666666666 89999999999964 5654 4888777788888
Q ss_pred C--cHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc------
Q 036340 445 G--LVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHG-RLEDAMDLIKGM-PFEP-DKAVWGALLGACRVH------ 512 (579)
Q Consensus 445 ~--~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~------ 512 (579)
+ +++++++.++++++. .| +...|..-..++.+.| .++++++.++++ ...| |...|+....++...
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8 779999999999864 44 6778888888888888 899999999888 4455 788888887776552
Q ss_pred --------CCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchH
Q 036340 513 --------NNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDD 551 (579)
Q Consensus 513 --------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 551 (579)
+.++++++.+++++..+|++..+|..+.+++.+.+++++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.22 E-value=4.3e-05 Score=69.10 Aligned_cols=179 Identities=12% Similarity=0.036 Sum_probs=86.8
Q ss_pred HHHHHHHHhcc--CCCCeeeHHHHHHHHHhcC--ChHHHHHHHHHhHhCCCCC-ChhhHHHHHHHhcccCc-HHHHHHHH
Q 036340 381 VEARIIFEEMK--LLKNVVSWNAMIGGCASHG--FATEALELFKSMRSFKVLP-TYITFISVLSACAHAGL-VEEGRQHF 454 (579)
Q Consensus 381 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~-~~~a~~~~ 454 (579)
+++..+++.+. .+.+..+|+.-...+...+ .+++++.++.++.+. .| |..+|+.-...+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44444444432 2234444554444444444 255666666666542 23 33344444444444454 35566666
Q ss_pred HHhHHhhCCCCCcchhHHHHHHhhcc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc------
Q 036340 455 KSMVNEYGIEPRIEHFASLVDIVGRH--------------GRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVH------ 512 (579)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~------ 512 (579)
..++.. .+-|...|+....++.+. +.++++++.+.+. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 555543 122444444443333332 3345555555554 2223 555555444333332
Q ss_pred -----CCHHHHHHHHHHHhhcCCCCCCCchhhhhh---hhhcCCchHHHHHHHHHHhCC
Q 036340 513 -----NNVELAQVAAEALMKVEPENSTPYVLLYNM---YADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 513 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~ 563 (579)
+.++++++.+++++++.|++.-.+..++.. ....|..++....+.++++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 345677777777777777763322222211 113466667777777766443
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.21 E-value=1.8e-06 Score=79.90 Aligned_cols=151 Identities=13% Similarity=0.063 Sum_probs=82.5
Q ss_pred chHHHHHHHHhhhcCCHHHHHHHHHhcc-CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhc
Q 036340 364 VPINNALITMYARCGAIVEARIIFEEMK-LLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACA 442 (579)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 442 (579)
...+..+...+.+.|++++|...|++.. ..|+.. .+...++.+++...+. ...|..+..+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3457788899999999999999999864 334322 1223333444433221 136778888899
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HhhcCCHHHH
Q 036340 443 HAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGA-CRVHNNVELA 518 (579)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~-~~~~~~~~~A 518 (579)
+.|++++|+..++++++. .| +...+..++.+|...|++++|+..|+++ ...| +...+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998864 34 6778889999999999999999999988 4555 44455555555 3345677888
Q ss_pred HHHHHHHhhcCCCCCC
Q 036340 519 QVAAEALMKVEPENST 534 (579)
Q Consensus 519 ~~~~~~~~~~~p~~~~ 534 (579)
...|+++++..|.++.
T Consensus 319 ~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 319 KEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------
T ss_pred HHHHHHhhCCCCCCCC
Confidence 9999999999988753
No 188
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.20 E-value=7.8e-05 Score=67.38 Aligned_cols=191 Identities=10% Similarity=0.055 Sum_probs=127.2
Q ss_pred hhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcC--CHHHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCC-hHHHHHHHH
Q 036340 346 LHLGMQIHQMVTKTVIPDVPINNALITMYARCG--AIVEARIIFEEMK--LLKNVVSWNAMIGGCASHGF-ATEALELFK 420 (579)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~ 420 (579)
++.+..+++......|.+..+|+.-..++...+ .++++..+++.+. .+.|..+|+--..++...|. ++++++.+.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 345555555555566677777777777777777 4788888888875 45566777777777777787 588999999
Q ss_pred HhHhCCCCCChhhHHHHHHHhccc--------------CcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhcc-----
Q 036340 421 SMRSFKVLPTYITFISVLSACAHA--------------GLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRH----- 480 (579)
Q Consensus 421 ~~~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----- 480 (579)
++++.. +-|...|+.....+... +.++++++.+...+.. .| |...|+.+-..+.+.
T Consensus 170 ~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 170 SLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccc
Confidence 988643 22444665554444333 5678888888888754 45 566666554444444
Q ss_pred ------CChHHHHHHHHhC-CCCCCHHHHHHHHHH-----HhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhh
Q 036340 481 ------GRLEDAMDLIKGM-PFEPDKAVWGALLGA-----CRVHNNVELAQVAAEALMKVEPENSTPYVLLYN 541 (579)
Q Consensus 481 ------g~~~~A~~~~~~~-~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 541 (579)
+.++++++.++++ ...||. .|..+..+ ....|..++....+.++.+++|....-|..+..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3567888888777 455654 34332222 224678889999999999999987665555543
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.18 E-value=3.3e-06 Score=68.63 Aligned_cols=132 Identities=14% Similarity=-0.006 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCC-CC----hhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC----cch
Q 036340 399 WNAMIGGCASHGFATEALELFKSMRSFKVL-PT----YITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR----IEH 469 (579)
Q Consensus 399 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 469 (579)
+..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++.+....-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444555555556666666555554432100 01 124555555666666666666666665442111111 334
Q ss_pred hHHHHHHhhccCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCC
Q 036340 470 FASLVDIVGRHGRLEDAMDLIKGM-------PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEP 530 (579)
Q Consensus 470 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 530 (579)
+..++.++...|++++|...+++. +..+ ....+..+...+...|++++|...+++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 556666677777777777766654 1111 134566677778888999999998888876543
No 190
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.17 E-value=3.4e-06 Score=61.97 Aligned_cols=65 Identities=25% Similarity=0.213 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhC
Q 036340 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSN 562 (579)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (579)
+...+..++.++...|++++|+..|+++++.+|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778888888888888888888888888888888888888888888888888888888877543
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=2.5e-07 Score=69.82 Aligned_cols=92 Identities=11% Similarity=-0.042 Sum_probs=70.9
Q ss_pred cchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC------CCCchh
Q 036340 467 IEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN------STPYVL 538 (579)
Q Consensus 467 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~ 538 (579)
...+..++..+...|++++|+..+++. ...| +...+..+..++...|++++|+..+++++++.|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345666777777788888888777776 2233 67788888888899999999999999999999988 666777
Q ss_pred hhhhhhhcCCchHHHHHHHH
Q 036340 539 LYNMYADVGRWDDANEVRLL 558 (579)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~ 558 (579)
++.++...|+++.|.+.+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 88888888887777665554
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.15 E-value=2.9e-06 Score=81.85 Aligned_cols=123 Identities=7% Similarity=0.018 Sum_probs=90.7
Q ss_pred hcccCcHHHHHHHHHHhHHhhC--CCC----CcchhHHHHHHhhccCChHHHHHHHHhC---------CCCCC-HHHHHH
Q 036340 441 CAHAGLVEEGRQHFKSMVNEYG--IEP----RIEHFASLVDIVGRHGRLEDAMDLIKGM---------PFEPD-KAVWGA 504 (579)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~ 504 (579)
+..+|++++|+.++++.+.... +.| ...+++.|+.+|..+|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567888888888877765421 112 2356778888888888888888887765 23343 347788
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhh-----cCCCCCCC---chhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 505 LLGACRVHNNVELAQVAAEALMK-----VEPENSTP---YVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 505 l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
++..|...|++++|+.+++++++ +.|+.|.+ ...|..++.++|++++|+.+++++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999875 56776543 4577788888899999999998887643
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.3e-05 Score=77.43 Aligned_cols=159 Identities=8% Similarity=-0.027 Sum_probs=119.8
Q ss_pred HHHHHhcCChHHHHHHHHHhHhCCCCCCh----------------hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC
Q 036340 403 IGGCASHGFATEALELFKSMRSFKVLPTY----------------ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466 (579)
Q Consensus 403 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 466 (579)
...+.+.|++++|++.|.++.+....... ..+..++..|...|++++|.+++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45577889999999999999875322211 13677888999999999999999988764332222
Q ss_pred c----chhHHHHHHhhccCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcC-----
Q 036340 467 I----EHFASLVDIVGRHGRLEDAMDLIKGM-------PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVE----- 529 (579)
Q Consensus 467 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----- 529 (579)
. .+...+...+...|++++|..+++.. ...+ ...++..++..+...|++++|...++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23345566677889999999988765 2233 34577888999999999999999999987532
Q ss_pred -CCCCCCchhhhhhhhhcCCchHHHHHHHHHHh
Q 036340 530 -PENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561 (579)
Q Consensus 530 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (579)
|....++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22234688889999999999999999988753
No 194
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=8.6e-06 Score=79.21 Aligned_cols=116 Identities=9% Similarity=0.043 Sum_probs=56.1
Q ss_pred HHHhhhcCCHHHHHHHHHhcc-C-CCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHHhcccCcH
Q 036340 371 ITMYARCGAIVEARIIFEEMK-L-LKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVLSACAHAGLV 447 (579)
Q Consensus 371 ~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~ 447 (579)
...+.+.|++++|.+.|++.. . +.+...|..+..+|.+.|++++|++.+++..+. .|+ ..++..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 334555566666666655542 1 223445555555555666666666666655543 332 23555555555555666
Q ss_pred HHHHHHHHHhHHhhCCCC-CcchhHHHHHH--hhccCChHHHHHHHH
Q 036340 448 EEGRQHFKSMVNEYGIEP-RIEHFASLVDI--VGRHGRLEDAMDLIK 491 (579)
Q Consensus 448 ~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 491 (579)
++|.+.++++++. .| +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666655555533 22 22333333333 444555555555554
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.10 E-value=3.6e-06 Score=63.88 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=48.9
Q ss_pred HHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 036340 449 EGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEAL 525 (579)
Q Consensus 449 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 525 (579)
.|+..|+++++ ..| +...+..++.++...|++++|+..+++. ...| +...|..+..++...|++++|+..|+++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35556665553 233 4556666666666777777777666665 2223 4556666666666667777777777776
Q ss_pred hhcCCC
Q 036340 526 MKVEPE 531 (579)
Q Consensus 526 ~~~~p~ 531 (579)
++..|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 666654
No 196
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.06 E-value=8.9e-06 Score=58.24 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCCCCc
Q 036340 496 EPDKAVWGALLGACRVHNN---VELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKKPTG 569 (579)
Q Consensus 496 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 569 (579)
++++..+..+..++...++ .++|...++++++.+|+++.++..++..+.+.|++++|..+|+++.+.... .+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 4577788888877754444 799999999999999999999999999999999999999999999987766 554
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.05 E-value=7.2e-07 Score=70.12 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=51.8
Q ss_pred cccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChH----------HHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036340 442 AHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLE----------DAMDLIKGM-PFEP-DKAVWGALLGA 508 (579)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~-~~~~-~~~~~~~l~~~ 508 (579)
.+.+.+++|.+.++..++. .| +...+..++.++...++++ +|+..|++. ...| +...|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 3556677777777777653 34 5667777777777766543 555555554 3333 34455555555
Q ss_pred HhhcC-----------CHHHHHHHHHHHhhcCCC
Q 036340 509 CRVHN-----------NVELAQVAAEALMKVEPE 531 (579)
Q Consensus 509 ~~~~~-----------~~~~A~~~~~~~~~~~p~ 531 (579)
|...| ++++|+..|+++++++|+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 55442 556666666666666665
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.99 E-value=6.5e-06 Score=59.14 Aligned_cols=80 Identities=18% Similarity=0.273 Sum_probs=54.4
Q ss_pred chhHHHHHHhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhh
Q 036340 468 EHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD 545 (579)
Q Consensus 468 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 545 (579)
..+..++..+...|++++|+..+++. ...| +...+..+..++...|++++|+..++++++.+|+++.++..++.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 44555666666666666666666655 2222 556677777777778888888888888888888877777777777665
Q ss_pred cC
Q 036340 546 VG 547 (579)
Q Consensus 546 ~g 547 (579)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 43
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.99 E-value=5.6e-06 Score=80.21 Aligned_cols=120 Identities=8% Similarity=-0.011 Sum_probs=97.6
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHhC-CCCC-C---------------HHHHHH
Q 036340 443 HAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEP-D---------------KAVWGA 504 (579)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~---------------~~~~~~ 504 (579)
..+++++|...|+..... .| ....+..++..+.+.|++++|+..|+++ ...| + ...|..
T Consensus 246 ~l~~~~~A~~~~~~~~~~---~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEEEECCCCGGGSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence 445556666655544332 23 3556778899999999999999999987 2223 2 578889
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCC
Q 036340 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565 (579)
Q Consensus 505 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (579)
+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...|+++.+....
T Consensus 323 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999876543
No 200
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.99 E-value=5.1e-06 Score=77.77 Aligned_cols=67 Identities=7% Similarity=-0.051 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
+...|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.++++.+...
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4568888999999999999999999999999999999999999999999999999999999887653
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.91 E-value=2.2e-05 Score=61.60 Aligned_cols=89 Identities=7% Similarity=-0.145 Sum_probs=45.0
Q ss_pred HHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhh---
Q 036340 473 LVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRV----HNNVELAQVAAEALMKVEPENSTPYVLLYNMYAD--- 545 (579)
Q Consensus 473 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 545 (579)
+..+|...+.+++|...|++.-...++..+..+...|.. .+++++|+..|+++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444444444444444222344444445444444 45555555555555544 334445555555555
Q ss_pred -cCCchHHHHHHHHHHhCC
Q 036340 546 -VGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 546 -~g~~~~A~~~~~~~~~~~ 563 (579)
.+++++|.+.+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 556666666666555544
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=1.7e-05 Score=59.53 Aligned_cols=68 Identities=10% Similarity=-0.019 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCC
Q 036340 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565 (579)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (579)
+...+..++..+...|++++|+..|+++++..|+++.++..++.++...|++++|.+.+++..+....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45678888899999999999999999999999999999999999999999999999999999876543
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.86 E-value=3.1e-05 Score=76.73 Aligned_cols=152 Identities=9% Similarity=0.026 Sum_probs=123.6
Q ss_pred CChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCc----------HHHHHHHHHHhHHhhCCCCCcchhHHHHHHhh
Q 036340 410 GFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGL----------VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVG 478 (579)
Q Consensus 410 ~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 478 (579)
...++|++.++++.. +.|+.. .|+.-..++...|+ ++++++.++.+++. .+.+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345688999999995 467665 66665556666666 89999999999864 2336778888888888
Q ss_pred ccC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhc-------
Q 036340 479 RHG--RLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHN-NVELAQVAAEALMKVEPENSTPYVLLYNMYADV------- 546 (579)
Q Consensus 479 ~~g--~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 546 (579)
+.| +++++++.++++ ...| +...|+.-..++...| .++++++.++++++.+|.|..+|...+.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 679999999998 4444 7889999888888888 899999999999999999999999999988774
Q ss_pred -------CCchHHHHHHHHHHhCCCC
Q 036340 547 -------GRWDDANEVRLLMKSNNIK 565 (579)
Q Consensus 547 -------g~~~~A~~~~~~~~~~~~~ 565 (579)
+.++++.+.++++....+.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5678999999988765543
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.83 E-value=6e-06 Score=64.88 Aligned_cols=87 Identities=14% Similarity=0.088 Sum_probs=63.9
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC----------HHHHHHHHHHHhhcCCCCCCCchhhhhhhhh
Q 036340 478 GRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNN----------VELAQVAAEALMKVEPENSTPYVLLYNMYAD 545 (579)
Q Consensus 478 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 545 (579)
.+.+.+++|+..++.. ...| +...|..+..++...++ +++|+..|+++++++|++..+|+.++.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4556677777777766 3334 67777777777766655 4588888888888888888888888888887
Q ss_pred cC-----------CchHHHHHHHHHHhCCC
Q 036340 546 VG-----------RWDDANEVRLLMKSNNI 564 (579)
Q Consensus 546 ~g-----------~~~~A~~~~~~~~~~~~ 564 (579)
.| ++++|.+.|++..+.+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 64 78888888888776554
No 205
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.78 E-value=9.1e-06 Score=74.88 Aligned_cols=263 Identities=13% Similarity=0.143 Sum_probs=176.7
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCc
Q 036340 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKR 200 (579)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 200 (579)
.+..|..+..+....+.+.+|++.| --..|+..|..++....+.|.+++-.+++...+. . ..
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--------IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk--------~--~k 114 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--------IKADDPSSYMEVVQAANTSGNWEELVKYLQMARK--------K--AR 114 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--------CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST--------T--CC
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--------HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------H--hc
Confidence 4567788888888888777777665 3366888888888888888888888888887762 1 22
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCH
Q 036340 201 NIVSWNSMIMCYAKAGDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTLTWNAMVSGYAQIGNL 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 280 (579)
++..=+.|+-+|++.++..+.++++ ..+|......+..-|...|.++.|.-+|..+. -|..|..++.+.|++
T Consensus 115 e~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~y 186 (624)
T 3lvg_A 115 ESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEY 186 (624)
T ss_dssp STTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGG
T ss_pred ccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHH
Confidence 3334457888888888765543332 22555566677777888888887777776553 233344556666776
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcC
Q 036340 281 ELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTV 360 (579)
Q Consensus 281 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 360 (579)
..|.+.-++. .++.+|..+-.+|...+++.-|.-.--.++-. ..-+..++..|...|.+++-+.+++.....-
T Consensus 187 q~AVdaArKA--ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE 259 (624)
T 3lvg_A 187 QAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE 259 (624)
T ss_dssp GSSTTTTTTC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST
T ss_pred HHHHHHHHhc--CChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 6665443322 57778999999999999888776554444321 2223345566888888888888888855566
Q ss_pred CCCchHHHHHHHHhhhcCCHHHHHHHHHhcc---CCC-------CeeeHHHHHHHHHhcCChHHHHH
Q 036340 361 IPDVPINNALITMYARCGAIVEARIIFEEMK---LLK-------NVVSWNAMIGGCASHGFATEALE 417 (579)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~-------~~~~~~~l~~~~~~~~~~~~A~~ 417 (579)
.....+|+.|.-.|++- ++++-.+.++..- .-| ....|.-++-.|.+..+++.|..
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 67778888888888875 4455444444321 122 33458888888888888876653
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.71 E-value=3.9e-05 Score=54.93 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
+...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 355778888889999999999999999999999999999999999999999999999999988754
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.69 E-value=9.5e-05 Score=71.38 Aligned_cols=123 Identities=11% Similarity=-0.006 Sum_probs=85.2
Q ss_pred HHHhcCChHHHHHHHHHhHhC---CCCC---Ch-hhHHHHHHHhcccCcHHHHHHHHHHhHHhh----CC-CC-CcchhH
Q 036340 405 GCASHGFATEALELFKSMRSF---KVLP---TY-ITFISVLSACAHAGLVEEGRQHFKSMVNEY----GI-EP-RIEHFA 471 (579)
Q Consensus 405 ~~~~~~~~~~A~~~~~~~~~~---~~~p---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~-~~~~~~ 471 (579)
.+...|++++|+.++++..+. -+.| +. .+++.|..+|..+|++++|..++++.+.-. |- .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888887776532 1222 22 377888888888888888888888765421 11 12 235678
Q ss_pred HHHHHhhccCChHHHHHHHHhC---------CCCCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHhh
Q 036340 472 SLVDIVGRHGRLEDAMDLIKGM---------PFEPDKA-VWGALLGACRVHNNVELAQVAAEALMK 527 (579)
Q Consensus 472 ~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~ 527 (579)
.|+.+|..+|++++|+.++++. +..|+.. +...+..++...+.+++|+.+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999998888776 2233332 445555677788899999999999875
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.64 E-value=0.00068 Score=52.96 Aligned_cols=112 Identities=10% Similarity=-0.137 Sum_probs=88.9
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhc----cCChHH
Q 036340 410 GFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGR----HGRLED 485 (579)
Q Consensus 410 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 485 (579)
+++++|+++|++..+.| .|... +...|...+.+++|.+.|++..+. -++.....|+.+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999988877 33333 677788888888899999988653 356777788888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhhcCC
Q 036340 486 AMDLIKGMPFEPDKAVWGALLGACRV----HNNVELAQVAAEALMKVEP 530 (579)
Q Consensus 486 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 530 (579)
|..++++.-..-++..+..+...|.. .++.++|...|+++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999888434577788888888877 7899999999999987643
No 209
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.58 E-value=2.6e-05 Score=71.90 Aligned_cols=224 Identities=15% Similarity=0.182 Sum_probs=121.9
Q ss_pred hhhcCCCHHHHHHHhccCCCCchhHHHHHHHHHHHcCCCCChHHHHHHHhhCCC--CCcchHHHHHHHHHccCCHHHHHH
Q 036340 4 GYVKRREMAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPE--RDCVTWNTVISGYAKTGEMEEALR 81 (579)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~ 81 (579)
++++.++..+|++.|=++ .|+..|..++.+..+.|. +++-..++....+ .++.+=+.|+-+|++.++..+-.+
T Consensus 63 AqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~---~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEe 137 (624)
T 3lvg_A 63 AQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN---WEELVKYLQMARKKARESYVETELIFALAKTNRLAELEE 137 (624)
T ss_dssp HTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSC---CTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTS
T ss_pred HHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHH
Confidence 444555555555444332 345556666666666665 7777766666652 444555677777777776554332
Q ss_pred HhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCC------------------------CCcchHHHHHHHHHhCCC
Q 036340 82 LFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG------------------------RDSASLSALVSGLIQNGE 137 (579)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------~~~~~~~~l~~~~~~~g~ 137 (579)
++. .||..-...+++-|...|.++.|.-+|..+.. .++.+|..+-.+|...++
T Consensus 138 fl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~E 214 (624)
T 3lvg_A 138 FIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKE 214 (624)
T ss_dssp TTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCT
T ss_pred HHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchH
Confidence 211 35555556666777777777777666665531 245566666666666666
Q ss_pred HHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCC-cchHHHHHHHHHHHhcC
Q 036340 138 LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFK-RNIVSWNSMIMCYAKAG 216 (579)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 216 (579)
+.-|..+--.++-.. . -...++..|-..|.+++-+.+++... |++ .....|+.|.-.|++-
T Consensus 215 frLAqicGLniIvha--d-----eL~elv~~YE~~G~f~ELIsLlEagl----------glErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 215 FRLAQMCGLHIVVHA--D-----ELEELINYYQDRGYFEELITMLEAAL----------GLERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp TTTTTHHHHHHHCCS--S-----CCSGGGSSSSTTCCCTTSTTTHHHHT----------TSTTCCHHHHHHHHHHHHSS-
T ss_pred HHHHHHhcchhcccH--H-----HHHHHHHHHHhCCCHHHHHHHHHHHh----------CCCchhHHHHHHHHHHHHhc-
Confidence 555544433332210 0 11224445566666666666666654 222 3455666666666655
Q ss_pred CHHHHHHHHHhcCCC-----------ChhHHHHHHHHHHhcCChHHHH
Q 036340 217 DVVSAREIFEQMLER-----------DTFSWNTMISGYIHVLDMEEAS 253 (579)
Q Consensus 217 ~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~ 253 (579)
++++..+.++..-.+ ....|..++-.|.+-.+++.|.
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 455555555443221 2344666666666666666544
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.56 E-value=2.8e-05 Score=56.83 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=52.9
Q ss_pred HHHHhhccCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCc
Q 036340 473 LVDIVGRHGRLEDAMDLIKGM-PFEP-DKA-VWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549 (579)
Q Consensus 473 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 549 (579)
.+..+.+.|++++|+..++++ ...| +.. .+..++.++...|++++|+..|+++++.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455666777777777777766 2233 556 77777777888888888888888888888887654422 445
Q ss_pred hHHHHHHHHH
Q 036340 550 DDANEVRLLM 559 (579)
Q Consensus 550 ~~A~~~~~~~ 559 (579)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 211
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.55 E-value=4.3e-05 Score=57.74 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=27.6
Q ss_pred hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC-CcchhHHHHHHhhccCChHHHHHHHHh
Q 036340 433 TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP-RIEHFASLVDIVGRHGRLEDAMDLIKG 492 (579)
Q Consensus 433 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 492 (579)
.+..+...+...|++++|+..+++++.. .| +...+..++.++...|++++|...+++
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444555555555555555554432 22 234444455555555555555555444
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.47 E-value=0.00013 Score=69.13 Aligned_cols=81 Identities=9% Similarity=0.012 Sum_probs=55.7
Q ss_pred cCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhh-----cCCCCCC---Cchhhhh
Q 036340 480 HGRLEDAMDLIKGM---------PFEPD-KAVWGALLGACRVHNNVELAQVAAEALMK-----VEPENST---PYVLLYN 541 (579)
Q Consensus 480 ~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~ 541 (579)
.|++++|+.++++. +..|+ ..+++.++.+|...|++++|+.+++++++ +.|+.|. .++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666554 12232 24677777888888888888888888874 3455443 4778888
Q ss_pred hhhhcCCchHHHHHHHHHH
Q 036340 542 MYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 542 ~~~~~g~~~~A~~~~~~~~ 560 (579)
+|..+|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 8888888888888887764
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.46 E-value=0.00011 Score=53.60 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=56.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhhcCCCCCC-CchhhhhhhhhcCCchHHHHHHHHHHhCCCCC
Q 036340 505 LLGACRVHNNVELAQVAAEALMKVEPENST-PYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566 (579)
Q Consensus 505 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 566 (579)
.+..+...|++++|+..++++++.+|+++. ++..++.+|...|++++|.+.+++..+.....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 456678899999999999999999999998 99999999999999999999999998766543
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.38 E-value=0.003 Score=57.29 Aligned_cols=139 Identities=10% Similarity=-0.004 Sum_probs=75.5
Q ss_pred CCCeeeHHHHHHHHH--hcC---ChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcc---cC-----cHHHHHHHHHHhH
Q 036340 393 LKNVVSWNAMIGGCA--SHG---FATEALELFKSMRSFKVLPTYI-TFISVLSACAH---AG-----LVEEGRQHFKSMV 458 (579)
Q Consensus 393 ~~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~---~~-----~~~~a~~~~~~~~ 458 (579)
+.+...|...+++.. ..+ +..+|+.+|++.++ ..|+.. .+..+..+|.. .+ ........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 456667777666543 333 34788999999885 467643 55544444421 00 1111111111111
Q ss_pred HhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCC
Q 036340 459 NEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENS 533 (579)
Q Consensus 459 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 533 (579)
.....+.++.++..++..+...|++++|...++++ ...|+...|..+...+...|++++|.+.|++++.++|..+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 00011334555555555555567777777776665 3345655555566666667777777777777777777653
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.34 E-value=0.00034 Score=51.02 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=34.8
Q ss_pred eeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHHhcccCcHHHHHHHHHHhHH
Q 036340 396 VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPT-YITFISVLSACAHAGLVEEGRQHFKSMVN 459 (579)
Q Consensus 396 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 459 (579)
...+..+..++...|++++|+..|++..+. .|+ ...|..+..+|...|++++|...|++.++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555666666666666666665543 232 23555555566666666666666665543
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.21 E-value=0.00043 Score=65.77 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=49.4
Q ss_pred hhccCChHHHHHHHHhC------CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhh-----cCCCCC---CCchh
Q 036340 477 VGRHGRLEDAMDLIKGM------PFEPD----KAVWGALLGACRVHNNVELAQVAAEALMK-----VEPENS---TPYVL 538 (579)
Q Consensus 477 ~~~~g~~~~A~~~~~~~------~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~---~~~~~ 538 (579)
+.++|++++|+.++++. ...|+ ..+++.++.+|...|++++|+.++++++. +.|++| ..++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 33455666666555443 01121 23556666667777777777777777664 234433 23666
Q ss_pred hhhhhhhcCCchHHHHHHHHHH
Q 036340 539 LYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
|+.+|..+|++++|+.++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 7777777777777777776653
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.15 E-value=0.0011 Score=62.94 Aligned_cols=92 Identities=10% Similarity=0.037 Sum_probs=67.8
Q ss_pred ccCcHHHHHHHHHHhHHhhC--CCCC----cchhHHHHHHhhccCChHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 036340 443 HAGLVEEGRQHFKSMVNEYG--IEPR----IEHFASLVDIVGRHGRLEDAMDLIKGM---------PFEPD-KAVWGALL 506 (579)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~ 506 (579)
..|++++|..++++.+.... +.|+ ..+++.|+.+|..+|++++|+.++++. +..|+ ..+++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45778888888887765321 1222 356778888888899999888888775 23444 34788899
Q ss_pred HHHhhcCCHHHHHHHHHHHhh-----cCCCCCC
Q 036340 507 GACRVHNNVELAQVAAEALMK-----VEPENST 534 (579)
Q Consensus 507 ~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~ 534 (579)
..|...|++++|+.+|+++++ +.|+.|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 999999999999999999985 4576654
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.05 E-value=0.021 Score=59.89 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=100.3
Q ss_pred hhcCCCHHHHHH-HhccCCCCchhHHHHHHHHHHHcCCCCChHHHHHHHhhCCCCCcchHHHHHHHHHccCCHHHHHHHh
Q 036340 5 YVKRREMAKARK-LFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLF 83 (579)
Q Consensus 5 ~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (579)
....+++++|.+ ++..+. +......++..+.+.+. +++|+++.+. + ..-.......|+++.|.++.
T Consensus 609 ~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~---~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEY---YEEALNISPD-----Q---DQKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTC---HHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCC---hHHheecCCC-----c---chheehhhhcCCHHHHHHHH
Confidence 445788888888 664433 12223666666777776 8988887642 2 12234456789999999998
Q ss_pred hcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHH
Q 036340 84 NSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYN 163 (579)
Q Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 163 (579)
+.+ .+...|..+...+.+.++++.|++.|.++.. +..+...+...|+.+...++.+.+... + .+.
T Consensus 676 ~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~~~--~------~~~ 740 (814)
T 3mkq_A 676 TDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAETT--G------KFN 740 (814)
T ss_dssp TTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHHHT--T------CHH
T ss_pred Hhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHHHc--C------chH
Confidence 877 5667899999999999999999999998754 344444455566666555555444442 1 123
Q ss_pred HHHHHHhhCCCHHHHHHHHcccc
Q 036340 164 TLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 164 ~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
....++.+.|++++|.+++.++.
T Consensus 741 ~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHcC
Confidence 33344555666666666666654
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.03 E-value=0.0022 Score=58.15 Aligned_cols=135 Identities=14% Similarity=0.075 Sum_probs=92.8
Q ss_pred CCCChhhHHHHHHHhc--c---cCcHHHHHHHHHHhHHhhCCCCC-cchhHHHHHHhhc---cC-C-------hHHHHHH
Q 036340 427 VLPTYITFISVLSACA--H---AGLVEEGRQHFKSMVNEYGIEPR-IEHFASLVDIVGR---HG-R-------LEDAMDL 489 (579)
Q Consensus 427 ~~p~~~~~~~l~~~~~--~---~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-~-------~~~A~~~ 489 (579)
.+.+...|...+++.. . .....+|..+|+++++. .|+ ...+..++.+|.- .+ . ...+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3455667777776543 2 34468899999999854 675 3444444444421 11 1 1122222
Q ss_pred HHhCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCC
Q 036340 490 IKGMP-FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565 (579)
Q Consensus 490 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (579)
...+. .+.++..+..+...+...|++++|+..+++++.++|+ ...|..+++++.-.|++++|.+.++++...++.
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 22333 2447778888877777789999999999999999975 455778899999999999999999998876653
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.03 E-value=0.0011 Score=57.44 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=58.1
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHhh-----cCCHHHHHHHHHHHhhcCCCC-CCCchhhhhhhhh-cCCchHH
Q 036340 484 EDAMDLIKGM-PFEPD---KAVWGALLGACRV-----HNNVELAQVAAEALMKVEPEN-STPYVLLYNMYAD-VGRWDDA 552 (579)
Q Consensus 484 ~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~g~~~~A 552 (579)
..|...+++. ...|+ ...|..++..|.+ -|+.++|.+.|+++++++|+. ..++..++..++. .|++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3444444444 34454 4466666666666 378888888888888888864 7777777877776 4788888
Q ss_pred HHHHHHHHhCCCCCCCc
Q 036340 553 NEVRLLMKSNNIKKPTG 569 (579)
Q Consensus 553 ~~~~~~~~~~~~~~~~~ 569 (579)
.+++++.....+...|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 88888877766664454
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.01 E-value=0.022 Score=42.32 Aligned_cols=141 Identities=10% Similarity=0.041 Sum_probs=98.9
Q ss_pred HHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHH
Q 036340 406 CASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED 485 (579)
Q Consensus 406 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 485 (579)
+.-.|..++..++..+.... .+..-|+.++--....-+-+-..+.++.+-+-+.+ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34578889999999888753 34445666665555555666666777666433222 23444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCC
Q 036340 486 AMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIK 565 (579)
Q Consensus 486 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (579)
....+-.++ .+...+...+..+..+|.-+.-.+++..++..+|.++..+..++.+|.+.|+..+|.++++++-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444444443 244455666777788899999889998887777777888999999999999999999999999999975
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.00 E-value=0.0019 Score=46.01 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=53.2
Q ss_pred CCCcchhHHHHHHhhccCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC
Q 036340 464 EPRIEHFASLVDIVGRHGR---LEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN 532 (579)
Q Consensus 464 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 532 (579)
++++..+..++.++...++ .++|..++++. ...| ++.....++..+.+.|++++|+..|+++++.+|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3456677777777765444 68888888877 4445 67778888888899999999999999999999883
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.98 E-value=0.025 Score=59.41 Aligned_cols=75 Identities=15% Similarity=0.099 Sum_probs=36.2
Q ss_pred HHHHHHHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHH
Q 036340 64 NTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAAR 143 (579)
Q Consensus 64 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 143 (579)
..++..+.+.|..++|+++.+.- ..-.......|+++.|.++.+.+ .+...|..++..+.+.|+++.|++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHH
Confidence 44455555555555555544311 01122334455555555555444 233455555555555555555555
Q ss_pred HHHHh
Q 036340 144 VLVKC 148 (579)
Q Consensus 144 ~~~~~ 148 (579)
+|.++
T Consensus 703 ~y~~~ 707 (814)
T 3mkq_A 703 AFTNA 707 (814)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55554
No 224
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.89 E-value=0.52 Score=48.68 Aligned_cols=260 Identities=10% Similarity=0.011 Sum_probs=132.6
Q ss_pred HHHHhcCChHHHHHHhhcCCC----CChh--hHHHHHHHHHhcCCHHHHHHHHccCCC-CC----------hhhHHHHHH
Q 036340 241 SGYIHVLDMEEASNLFVKMPH----PDTL--TWNAMVSGYAQIGNLELALDFFKRMPQ-KN----------LVSWNSMIA 303 (579)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~----~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----------~~~~~~l~~ 303 (579)
-+....|+.++++.++..... .+.. .-..+.-+....|..+++..++..... .+ +..-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 346677888888888888774 1222 222333445555655567766655432 22 111222333
Q ss_pred HHHhCCC-chHHHHHHHHHHHcCCCCChhhHH--HHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCCH
Q 036340 304 GCETNKD-YEGAIKLFIQMQVEGEKPDRHTFS--SILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGAI 380 (579)
Q Consensus 304 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 380 (579)
+.+..|. -+++.+.+..+..... +...... .+...+...|+.+....++.........+..-...+.-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 3333332 2456666666654321 1111111 2223455777777777776663333222222223333444466788
Q ss_pred HHHHHHHHhccCCCCeee-HH---HHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHH
Q 036340 381 VEARIIFEEMKLLKNVVS-WN---AMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKS 456 (579)
Q Consensus 381 ~~A~~~~~~~~~~~~~~~-~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 456 (579)
+.+..+++.+....++.. |. ++.-+|+..|+.....++++.+.+. ...+......+.-++...|+.+.+.++++.
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 888777777653333332 22 3444566788876666688888753 222222333333355555666666666655
Q ss_pred hHHhhCCCCCcchhHHHHHHhhccCCh-HHHHHHHHhCCCCCCHHHHHH
Q 036340 457 MVNEYGIEPRIEHFASLVDIVGRHGRL-EDAMDLIKGMPFEPDKAVWGA 504 (579)
Q Consensus 457 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~ 504 (579)
+.+ ...|.+..-..++-+....|.. .+|.+.+..+...+|..+-..
T Consensus 620 L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~ 666 (963)
T 4ady_A 620 LSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQA 666 (963)
T ss_dssp GGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHH
Confidence 543 2234443333444444445443 567777777755555544433
No 225
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.89 E-value=0.0022 Score=60.93 Aligned_cols=97 Identities=10% Similarity=-0.067 Sum_probs=67.9
Q ss_pred HHhcccCcHHHHHHHHHHhHHhhC--CCCC----cchhHHHHHHhhccCChHHHHHHHHhC---------CCCCC-HHHH
Q 036340 439 SACAHAGLVEEGRQHFKSMVNEYG--IEPR----IEHFASLVDIVGRHGRLEDAMDLIKGM---------PFEPD-KAVW 502 (579)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~ 502 (579)
..+..+|++++|+.++++.+.... +.|+ ..+++.++.+|..+|++++|+.++++. +..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 345567788888888877764311 1221 346677888888888888888887765 23343 3477
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhh-----cCCCCCCC
Q 036340 503 GALLGACRVHNNVELAQVAAEALMK-----VEPENSTP 535 (579)
Q Consensus 503 ~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~ 535 (579)
+.++..|...|++++|+.+++++++ +.|+.|.+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 8888889999999999999999875 56776543
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.79 E-value=0.0021 Score=49.91 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=62.0
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHhhcCCHHH
Q 036340 445 GLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHG---RLEDAMDLIKGM-PFE-P--DKAVWGALLGACRVHNNVEL 517 (579)
Q Consensus 445 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~ 517 (579)
.....+.+.|.+.... + .++..+...++.++.+.+ +.++++.++++. ... | ....+-.+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3445555566655442 2 367777777888888877 555777777766 222 4 34566667777889999999
Q ss_pred HHHHHHHHhhcCCCCCCC
Q 036340 518 AQVAAEALMKVEPENSTP 535 (579)
Q Consensus 518 A~~~~~~~~~~~p~~~~~ 535 (579)
|.+.++++++.+|++..+
T Consensus 90 A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCCCCHHH
Confidence 999999999999987553
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.72 E-value=0.0025 Score=46.69 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhh
Q 036340 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLL 539 (579)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 539 (579)
....+..+..++.+.|+++.|+..+++++++.|+++.+...+
T Consensus 45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 456778888889999999999999999999999986654443
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.70 E-value=0.0014 Score=50.82 Aligned_cols=82 Identities=9% Similarity=-0.094 Sum_probs=66.2
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHhhcC-C-CCCCCchhhhhhhhhcCCchHHHHHH
Q 036340 484 EDAMDLIKGM--PFEPDKAVWGALLGACRVHN---NVELAQVAAEALMKVE-P-ENSTPYVLLYNMYADVGRWDDANEVR 556 (579)
Q Consensus 484 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 556 (579)
..+.+.|.+. ...++..+...+.+++.+.+ +.++++.+++.+.+.+ | ++...++.|+-+|.+.|++++|++++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444433 23468888889999998888 7779999999999988 7 55788999999999999999999999
Q ss_pred HHHHhCCCC
Q 036340 557 LLMKSNNIK 565 (579)
Q Consensus 557 ~~~~~~~~~ 565 (579)
+.+.+..+.
T Consensus 95 ~~lL~ieP~ 103 (152)
T 1pc2_A 95 RGLLQTEPQ 103 (152)
T ss_dssp HHHHHHCTT
T ss_pred HHHHhcCCC
Confidence 999876654
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.11 Score=41.40 Aligned_cols=103 Identities=13% Similarity=0.262 Sum_probs=67.3
Q ss_pred HHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHh
Q 036340 69 GYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKC 148 (579)
Q Consensus 69 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 148 (579)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-.++-+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344667777777777665 4566777777777777777777777777533 445555556667776666665555
Q ss_pred ccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 149 GSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
..+ + -++.....+...|+++++.++|.+..
T Consensus 87 ~~~--g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 87 QTR--E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHT--T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHC--c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 443 1 24455555666788888888876653
No 230
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.60 E-value=0.66 Score=46.03 Aligned_cols=303 Identities=9% Similarity=-0.018 Sum_probs=153.5
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHH--hcCChHHHHHHhhcCCCCChh----hHHHHHHHHHhcCCHHHHHH
Q 036340 212 YAKAGDVVSAREIFEQMLERDTFSWNTMISGYI--HVLDMEEASNLFVKMPHPDTL----TWNAMVSGYAQIGNLELALD 285 (579)
Q Consensus 212 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~ 285 (579)
..+.|++..+..+...+..--...|...-..-. ......+....+.+- |+.. .-...+..+.+.+++.....
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~--~~~p~~~~Lr~~~l~~l~~~~~w~~~l~ 93 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRAN--PTLPPARTLQSRFVNELARREDWRGLLA 93 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCcccCCHHHHHHHHHHC--CCChhHHHHHHHHHHHHHhCCCHHHHHH
Confidence 446688887777766663322222222111111 222456666666654 3322 22344566677888888888
Q ss_pred HHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHH---Hh-----
Q 036340 286 FFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQM---VT----- 357 (579)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~----- 357 (579)
++.. ...+...-.....+....|+...|....+.+-..|.. .......++..+...|........-+. ..
T Consensus 94 ~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~ 171 (618)
T 1qsa_A 94 FSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTG 171 (618)
T ss_dssp HCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHH
T ss_pred hccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Confidence 7776 3334444444566677778877777777776655532 334455556555544443322211111 11
Q ss_pred ------hcCCCCch-HHHHHHHHhhhcCCHHHHHHHHHhccCCCCeee---HHHHHHHHHhcCChHHHHHHHHHhHhCC-
Q 036340 358 ------KTVIPDVP-INNALITMYARCGAIVEARIIFEEMKLLKNVVS---WNAMIGGCASHGFATEALELFKSMRSFK- 426 (579)
Q Consensus 358 ------~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 426 (579)
..++++.. ....++..+. +...+....... .++... +...+.-+. ..+.+.|...+....+..
T Consensus 172 ~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~--~~~~~~~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~~ 245 (618)
T 1qsa_A 172 LVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT--GATDFTRQMAAVAFASVA-RQDAENARLMIPSLAQAQQ 245 (618)
T ss_dssp HHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS--CCCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc--CCChhhHHHHHHHHHHHH-hcCHHHHHHHHHhhhhccC
Confidence 11111111 1111111111 122222222211 122111 111122222 347788888888876433
Q ss_pred CCCChh--hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCC--CHHHH
Q 036340 427 VLPTYI--TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP--DKAVW 502 (579)
Q Consensus 427 ~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~ 502 (579)
+.+... ....+.......+...++...+...... .++.......+....+.|+++.|...|..++..+ .....
T Consensus 246 ~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~ 322 (618)
T 1qsa_A 246 LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR 322 (618)
T ss_dssp CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHH
Confidence 222221 3334444555666345555555554322 2333334444445557799999999999885433 23334
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhh
Q 036340 503 GALLGACRVHNNVELAQVAAEALMK 527 (579)
Q Consensus 503 ~~l~~~~~~~~~~~~A~~~~~~~~~ 527 (579)
--+.+++...|+.++|...|+++.+
T Consensus 323 YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 323 YWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4455677788999999999998875
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.30 E-value=0.0059 Score=44.64 Aligned_cols=67 Identities=9% Similarity=-0.083 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcC-------CCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCC
Q 036340 498 DKAVWGALLGACRVHNNVELAQVAAEALMKVE-------PENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNI 564 (579)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (579)
+..-+..++..+...|++..|...|+++++.. +..+.++..|+.+|.+.|++++|..+++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 45566788888999999999999999998743 22345688999999999999999999999886554
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.82 E-value=0.058 Score=40.18 Aligned_cols=89 Identities=16% Similarity=0.071 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHhhcCCHHHH
Q 036340 446 LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLED---AMDLIKGM-PFE-P--DKAVWGALLGACRVHNNVELA 518 (579)
Q Consensus 446 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~A 518 (579)
....+.+-|...... + .|+..+-..++.++.+..+..+ ++.+++.. ... | .....-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344445555554432 2 3666777777778877776665 67777765 222 3 223445566778899999999
Q ss_pred HHHHHHHhhcCCCCCCCc
Q 036340 519 QVAAEALMKVEPENSTPY 536 (579)
Q Consensus 519 ~~~~~~~~~~~p~~~~~~ 536 (579)
...++.+++.+|+|..+.
T Consensus 94 ~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 999999999999886543
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.38 Score=38.37 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=22.2
Q ss_pred HhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 133 IQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
...|+++.|.++.+.+ .+...|..|+......|+++-|.+.|.+..
T Consensus 16 L~lg~l~~A~e~a~~l--------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh--------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3445555555554442 123345555555555555555555555543
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.079 Score=53.49 Aligned_cols=54 Identities=11% Similarity=-0.021 Sum_probs=50.1
Q ss_pred HHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHH
Q 036340 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLM 559 (579)
Q Consensus 506 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (579)
..-|...|+++-|+.+.+++....|.+..+|..|+.+|...|+|+.|+-.+.-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 355678899999999999999999999999999999999999999999998876
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.40 E-value=0.012 Score=44.82 Aligned_cols=102 Identities=11% Similarity=0.045 Sum_probs=67.3
Q ss_pred ChhhHHHHHHHhcccCcH------HHHHHHHHHhHHhhCCCCCc-chhHHHHHH------hhccCChHHHHHHHHhC-C-
Q 036340 430 TYITFISVLSACAHAGLV------EEGRQHFKSMVNEYGIEPRI-EHFASLVDI------VGRHGRLEDAMDLIKGM-P- 494 (579)
Q Consensus 430 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~-~- 494 (579)
|..+|...+....+.|+. ++.+++|++++. .++|+. ..+...+.. +...++.++|.++|+.+ .
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445888888877777888 888899998876 456643 222233322 23457788888887776 1
Q ss_pred -CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC
Q 036340 495 -FEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534 (579)
Q Consensus 495 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 534 (579)
.+- ...|.....--.++|+...|.+++.+++.+.|....
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 111 555655556566788888888888888887776433
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.37 E-value=0.021 Score=49.65 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhHHhhCCCCC---cchhHHHHHHhhc-----cCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHhh-cCC
Q 036340 447 VEEGRQHFKSMVNEYGIEPR---IEHFASLVDIVGR-----HGRLEDAMDLIKGM-PFEPD--KAVWGALLGACRV-HNN 514 (579)
Q Consensus 447 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~-~~~ 514 (579)
...|...++++++ +.|+ -..|..++..|.. -|+.++|.+.|++. .+.|+ ...+......++. .|+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 4556666666653 3555 4567777777777 38888888888877 45552 5666666776666 488
Q ss_pred HHHHHHHHHHHhhcCCCC-CCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 515 VELAQVAAEALMKVEPEN-STPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 515 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
.+++...+++++...|.. |. ..+.+ .+.-++|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~~lan----~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--NKLLV----ILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--CHHHH----HHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--hhHHH----HHHHHHHHHHHHHhH
Confidence 888888888888887774 33 23333 334466776666553
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.77 E-value=0.064 Score=40.98 Aligned_cols=98 Identities=9% Similarity=0.087 Sum_probs=68.4
Q ss_pred CCCeeeHHHHHHHHHhcCCh------HHHHHHHHHhHhCCCCCChh-hHHHHHH------HhcccCcHHHHHHHHHHhHH
Q 036340 393 LKNVVSWNAMIGGCASHGFA------TEALELFKSMRSFKVLPTYI-TFISVLS------ACAHAGLVEEGRQHFKSMVN 459 (579)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 459 (579)
+.|..+|-..+...-+.|++ ++..++|++... .++|+.. .+...+. .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45677788888888777888 888888888887 4666543 2222222 22345788888999988865
Q ss_pred hhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC
Q 036340 460 EYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 460 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 493 (579)
. .-. =...|...++.-.++|+..+|.+++.+.
T Consensus 89 ~-hKk-FAKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 89 N-CKK-FAFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp H-CTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H-hHH-HHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 212 2566666777777899999999988776
No 238
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.68 E-value=0.14 Score=40.14 Aligned_cols=116 Identities=12% Similarity=0.024 Sum_probs=57.0
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhcc----CCCCee-------eHHHHHHHHHhcCChHHHHHHHHHhHhCC-CCCChh-hH
Q 036340 368 NALITMYARCGAIVEARIIFEEMK----LLKNVV-------SWNAMIGGCASHGFATEALELFKSMRSFK-VLPTYI-TF 434 (579)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~-~~ 434 (579)
..-+..+...|.++.|+-+.+-+. ..|+.. ++..+..++...+++.+|...|++.+... .-+... +.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 344555666666776666655432 233321 23445566666666666666666654221 111111 11
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCC
Q 036340 435 ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEP 497 (579)
Q Consensus 435 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 497 (579)
..+. ...... ......++.+.-..++.+|.+.|++++|+.+++.++.+.
T Consensus 104 ~~~~----~~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 104 PSTG----NSASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred cccc----ccCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 0000 000000 000122334555668888888888888888888875443
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.36 E-value=0.039 Score=41.11 Aligned_cols=71 Identities=10% Similarity=-0.091 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHhhcCCHHH---HHHHHHHHhhcC-C-CCCCCchhhhhhhhhcCCchHHHHHHHHHHhCCCCC
Q 036340 496 EPDKAVWGALLGACRVHNNVEL---AQVAAEALMKVE-P-ENSTPYVLLYNMYADVGRWDDANEVRLLMKSNNIKK 566 (579)
Q Consensus 496 ~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 566 (579)
.|+..+-..+.+++.+..+... ++.+++.+.+.. | ..-..++.|+-.+.+.|+|++|+.+++.+.+..+.+
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 4788888888889888776655 899999988876 5 455678899999999999999999999998766543
No 240
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=94.24 E-value=2.1 Score=35.71 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=56.4
Q ss_pred HHHhhCCCCCcchHHHHHHHHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHH
Q 036340 50 YLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALV 129 (579)
Q Consensus 50 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 129 (579)
.+.+.+..+|...-...+..+.+.|+.+....+.+.+..++...-...+.++...++.+....+.+.+..+++..-...+
T Consensus 23 ~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~ 102 (211)
T 3ltm_A 23 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAA 102 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 33333445555555555555555555444444444444555555555555555555544444444444445555545555
Q ss_pred HHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCH
Q 036340 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRV 175 (579)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 175 (579)
.++...|+.+ +...+..+.. .++...-...+.++...|+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~-----d~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK-----DEDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT-----CSSHHHHHHHHHHHHHHCCG
T ss_pred HHHHHhCcHH-HHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCH
Confidence 5555555432 3333333332 22333444444445544543
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.16 E-value=0.8 Score=34.26 Aligned_cols=130 Identities=9% Similarity=0.084 Sum_probs=84.7
Q ss_pred CChHHHHHHHhhCC-CCCcchHHHHHHHHHccCCHHHHHHHhhcCCC-CchhhHHHHHHHHHhcCChhhHHHHHccCCCC
Q 036340 43 GFLEEARYLFDIMP-ERDCVTWNTVISGYAKTGEMEEALRLFNSMPA-RNVVSWNAMISGFLQNGDVANAIEFFDRMPGR 120 (579)
Q Consensus 43 ~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 120 (579)
|..++..++..+.. ..+..-||.++.-....-+-+-..+.++.+-. -|. ...|++......+-.+ ..
T Consensus 21 G~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi~C~~~~-n~ 89 (172)
T 1wy6_A 21 GYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECGVIN-NT 89 (172)
T ss_dssp TCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHHHHT-TC
T ss_pred hhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHHHHHHHh-cc
Confidence 33666666666655 34445566666666666666666666665541 111 1123333333333222 12
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 121 DSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
+.......+..+..+|+-++-.+++..+.. ..++++.....+..+|.+.|+..+|.+++.++-
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~---n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK---NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc---cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 344555667788899999999999999766 567778889999999999999999999998886
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.15 E-value=0.32 Score=36.93 Aligned_cols=72 Identities=10% Similarity=0.051 Sum_probs=53.7
Q ss_pred CCCCcchhHHHHHHhhccCChH---HHHHHHHhC-CCCC-C-HHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCC
Q 036340 463 IEPRIEHFASLVDIVGRHGRLE---DAMDLIKGM-PFEP-D-KAVWGALLGACRVHNNVELAQVAAEALMKVEPENST 534 (579)
Q Consensus 463 ~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 534 (579)
-.|+..+-..++.++.+..+.+ +++.+++.. ...| + ....-.+.-++.+.|++++|.+..+.+++.+|+|..
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 3577888888888998887655 566677666 2234 2 334455667788999999999999999999999865
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.83 E-value=1.1 Score=33.97 Aligned_cols=70 Identities=13% Similarity=0.016 Sum_probs=38.4
Q ss_pred CCChhhHHHHHHHhcccCc---HHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCCC
Q 036340 428 LPTYITFISVLSACAHAGL---VEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPD 498 (579)
Q Consensus 428 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 498 (579)
.|+..+-..+..++.+... ..+++.+++.+.+. +.....+....|+-++.+.|++++|+++.+.+ ..+|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4455554445555555443 34566666666553 21123445555666667777777777766665 44553
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.51 E-value=0.13 Score=38.42 Aligned_cols=74 Identities=11% Similarity=0.072 Sum_probs=53.4
Q ss_pred CCCCCcchhHHHHHHhhccCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCC
Q 036340 462 GIEPRIEHFASLVDIVGRHGRLE---DAMDLIKGM-PFEP--DKAVWGALLGACRVHNNVELAQVAAEALMKVEPENSTP 535 (579)
Q Consensus 462 ~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 535 (579)
+-.|++.+-..++.++.+..+.+ +++.++++. ...| ....+-.+.-++.+.|++++|.+..+.+++.+|+|..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 33567777778888888877654 566666665 2234 23455666677889999999999999999999988653
No 245
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=92.51 E-value=3.8 Score=33.66 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=36.7
Q ss_pred CCCCCcchHHHHHHHHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHh
Q 036340 55 MPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQ 134 (579)
Q Consensus 55 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 134 (579)
+..+|+..-...+..+.+.|+.+....+.+.+..++.......+.++...++.+....+.+.+..+++..-...+.++..
T Consensus 23 L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 23 LQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ 102 (201)
T ss_dssp TTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33444444444444444444433333334444444444444444444444444333333333334444444444444444
Q ss_pred CCC
Q 036340 135 NGE 137 (579)
Q Consensus 135 ~g~ 137 (579)
.++
T Consensus 103 ~~~ 105 (201)
T 3ltj_A 103 IGD 105 (201)
T ss_dssp HCC
T ss_pred hCc
Confidence 444
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.46 E-value=0.46 Score=35.56 Aligned_cols=71 Identities=13% Similarity=0.020 Sum_probs=42.1
Q ss_pred CCChhhHHHHHHHhcccC---cHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhC-CCCCCH
Q 036340 428 LPTYITFISVLSACAHAG---LVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGM-PFEPDK 499 (579)
Q Consensus 428 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 499 (579)
.|+..|-..+..++.+.. +..+++.+++++.+. +..-..+.+..|+-++.+.|++++|.++.+.+ ...|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 455555444555555544 344677777777654 21113455666777777777777777777766 555643
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.23 E-value=0.74 Score=36.05 Aligned_cols=104 Identities=8% Similarity=-0.043 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCc-------hhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCC-
Q 036340 124 SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL-------VRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGN- 195 (579)
Q Consensus 124 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 195 (579)
++..-+..+...|.++.|+-+...+.... ..+++ ..++..++.++...|++.+|...|+++........+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~-~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLS-NNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhh-cCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444555666666666666655543321 11111 1245666777777777777777777653221100000
Q ss_pred ---------------ccCCcchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036340 196 ---------------VRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQM 228 (579)
Q Consensus 196 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (579)
....++...-.-+..+|.+.++++.|+.+++.+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 011223334444556666666666666666655
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.13 E-value=13 Score=38.77 Aligned_cols=450 Identities=10% Similarity=0.011 Sum_probs=215.2
Q ss_pred HHHHHHHHHccCCHHHHHHHhhcCCCC-------------c-hhhHHHHH----HHHHhcCC--------hhhHHHHHcc
Q 036340 63 WNTVISGYAKTGEMEEALRLFNSMPAR-------------N-VVSWNAMI----SGFLQNGD--------VANAIEFFDR 116 (579)
Q Consensus 63 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------~-~~~~~~l~----~~~~~~~~--------~~~A~~~~~~ 116 (579)
...++..|.+.|.+.+|..+.-+...- + ...+..++ .+....-. +.-+.++|.+
T Consensus 148 v~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k 227 (963)
T 4ady_A 148 FERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMN 227 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHh
Confidence 455666677778888777776655421 1 12333322 22221111 2234555555
Q ss_pred CCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCc
Q 036340 117 MPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNV 196 (579)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 196 (579)
+. ..-|..+++.+.+.++.+.+.++|..+... ......|. +.-.+.+.+...--.++.+.+.... ...+-.
T Consensus 228 ~~---~~dy~~a~~~ai~LnD~~li~~if~~l~~~----~d~l~ayQ-iAFdL~~~~~Q~fL~~v~~~l~~~e-~~~kL~ 298 (963)
T 4ady_A 228 MP---NCDYLTLNKVVVNLNDAGLALQLFKKLKEE----NDEGLSAQ-IAFDLVSSASQQLLEILVTELTAQG-YDPALL 298 (963)
T ss_dssp SS---SCCHHHHHHHHHHHTCHHHHHHHHHHHHTT----CCHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHTT-CCHHHH
T ss_pred CC---chhHHHHHHHHHHcCCHHHHHHHHHHHHhc----ccHHHHHH-HHHHHhcccchHHHHHHHHhccccc-hhHHHH
Confidence 43 234667788888899999999999997641 11122233 2222333222111111111110000 000000
Q ss_pred cC---CcchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-Chh--HHHHHHHHHHhcCChHHH-HHHhhcCC--CCChhhH
Q 036340 197 RF---KRNIVSWNSMIMCYAKAGDVVSAREIFEQMLER-DTF--SWNTMISGYIHVLDMEEA-SNLFVKMP--HPDTLTW 267 (579)
Q Consensus 197 ~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~--~~~~l~~~~~~~~~~~~a-~~~~~~~~--~~~~~~~ 267 (579)
.+ .+....|...+.-. +.-+...-. .++..++. +.. +-..+.+++...|-.... +....... ..+-.-+
T Consensus 299 ~ILsg~~~~~Lyl~FL~~~-n~~d~~~l~-~~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~ 376 (963)
T 4ady_A 299 NILSGLPTCDYYNTFLLNN-KNIDIGLLN-KSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKF 376 (963)
T ss_dssp HHTTSHHHHHHHHHHHHHH-CCCCHHHHH-HHHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHH
T ss_pred HHhCCCChHHHHHHHHHhc-cccchhhHH-HHHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHH
Confidence 11 11123333333211 112332222 23444432 221 233456777777654332 11111111 1221122
Q ss_pred -HHHHHHHHhcCCHHHHHHHHccCCCC----Chh--hHHHHHHHHHhCCCchHHHHHHHHHHHcCC--CCC---h----h
Q 036340 268 -NAMVSGYAQIGNLELALDFFKRMPQK----NLV--SWNSMIAGCETNKDYEGAIKLFIQMQVEGE--KPD---R----H 331 (579)
Q Consensus 268 -~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~---~----~ 331 (579)
....-+....|+.++++.+++..... +.. .-..+.-+....|..+++..++.......- .-+ . .
T Consensus 377 sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~g 456 (963)
T 4ady_A 377 TATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHG 456 (963)
T ss_dssp HHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHH
T ss_pred HHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHH
Confidence 22234566789999999999987751 222 223334455666666678888777665321 000 1 1
Q ss_pred hHHHHHHhccCCCchhhHHHHHHHHhhcCC-CCchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCeee--HHHHHHHHHh
Q 036340 332 TFSSILSMSSGIVDLHLGMQIHQMVTKTVI-PDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVS--WNAMIGGCAS 408 (579)
Q Consensus 332 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~ 408 (579)
....+..++...++.+....+......... .....-.++...+.-.|+.+....++..+....+... ...+.-++..
T Consensus 457 AaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 457 ASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 111222344455554444434333322111 0112223444556667887777777776542222222 2333444557
Q ss_pred cCChHHHHHHHHHhHhCCCCCChh--hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHHHhhccCChHHH
Q 036340 409 HGFATEALELFKSMRSFKVLPTYI--TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVDIVGRHGRLEDA 486 (579)
Q Consensus 409 ~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 486 (579)
.|+.+.+..+++.+... ..|... ....+.-+|+..|+.....+++..+... ...++.-...++-++...|+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 537 YGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHH
Confidence 88989888888888753 122222 1223455788999988888888887652 222333333444445556777767
Q ss_pred HHHHHhCCCCCCHHHHHHHH--HHHhhcCC-HHHHHHHHHHHh
Q 036340 487 MDLIKGMPFEPDKAVWGALL--GACRVHNN-VELAQVAAEALM 526 (579)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~--~~~~~~~~-~~~A~~~~~~~~ 526 (579)
.++++.+....|+.+-.... -+....|. ..+++..+.++.
T Consensus 614 ~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 614 PRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 77776553233443333322 22333333 256777777775
No 249
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=92.11 E-value=4.5 Score=33.56 Aligned_cols=162 Identities=12% Similarity=0.090 Sum_probs=106.7
Q ss_pred HHHhccCCCCchhHHHHHHHHHHHcCCCCChHHHHHHHhhCCCCCcchHHHHHHHHHccCCHHHHHHHhhcCCCCchhhH
Q 036340 15 RKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSW 94 (579)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 94 (579)
..+.+.+..+++..-...+..+...+. .+..-.+.+.+..+|+.+-...+.++.+.|+.+....+.+.+..++...-
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr 98 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVR 98 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHH
Confidence 334444455777777777777777766 44444555555577887777888888888876655566666667888877
Q ss_pred HHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCC
Q 036340 95 NAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGR 174 (579)
Q Consensus 95 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 174 (579)
...+.++.+.++.+....+.+.+..++...-...+.++...|.. ++...+..+.. .++..+-...+.++.+.+.
T Consensus 99 ~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~-----d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 99 QSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK-----DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT-----CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc-----CCCHHHHHHHHHHHHHhCc
Confidence 78888888888866555555656667777777777778777764 35555555554 2344556666677777665
Q ss_pred HHHHHHHHcccc
Q 036340 175 VEEARKLFDKIP 186 (579)
Q Consensus 175 ~~~A~~~~~~~~ 186 (579)
.++...+..+.
T Consensus 173 -~~~~~~L~~~l 183 (211)
T 3ltm_A 173 -ERVRAAMEKLA 183 (211)
T ss_dssp -HHHHHHHHHHH
T ss_pred -hhHHHHHHHHH
Confidence 34455555544
No 250
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=90.97 E-value=5.7 Score=32.56 Aligned_cols=166 Identities=11% Similarity=0.078 Sum_probs=109.2
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHHHcCCCCChHHHHHHHhhCCCCCcchHHHHHHHHHccCCHHHHHHHhhcCCCCc
Q 036340 11 MAKARKLFDEMPQRDVVSWNVMISGYISSRGSGFLEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNSMPARN 90 (579)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 90 (579)
...--.+++.+..+++......+.++...+. ......+.+.+..+|+.+-...+.++.+.|+.+....+.+.+..++
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~---~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~ 89 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDED 89 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSS
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCC
Confidence 3334445555666888777777777777766 4445555555557787777777788888887666666666666788
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHh
Q 036340 91 VVSWNAMISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYG 170 (579)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (579)
+..-...+.++.+.++.+....+.+.+..++...-...+.++...++. ++...+..+.. .++...-...+.++.
T Consensus 90 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~-----d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK-----DEDGWVRQSAADALG 163 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 887778888888888876655566666667776767777777777764 45555555554 234555666667777
Q ss_pred hCCCHHHHHHHHcccc
Q 036340 171 QRGRVEEARKLFDKIP 186 (579)
Q Consensus 171 ~~g~~~~A~~~~~~~~ 186 (579)
..|+. ++...+..+.
T Consensus 164 ~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 164 EIGGE-RVRAAMEKLA 178 (201)
T ss_dssp HHCSH-HHHHHHHHHH
T ss_pred HhCch-hHHHHHHHHH
Confidence 76654 4444444443
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.50 E-value=5.7 Score=36.69 Aligned_cols=159 Identities=11% Similarity=-0.022 Sum_probs=76.7
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhcc----CCC---CeeeHHHHHHHHHhcC-ChHHHHHHHHHhHhCCCCCChhhH----
Q 036340 367 NNALITMYARCGAIVEARIIFEEMK----LLK---NVVSWNAMIGGCASHG-FATEALELFKSMRSFKVLPTYITF---- 434 (579)
Q Consensus 367 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~---- 434 (579)
...++..|.+.|+.++..+++.... .-+ .......++..+.... ..+.-+++..+..+-. .-+..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3456666777777777766666553 011 1112344555554432 2222233332222100 0011122
Q ss_pred --HHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC----cchhHHHHHHhhccCChHHHHHHHHhC-----CCCCCHHHHH
Q 036340 435 --ISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR----IEHFASLVDIVGRHGRLEDAMDLIKGM-----PFEPDKAVWG 503 (579)
Q Consensus 435 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~ 503 (579)
..++..|...|++.+|.+++..+.++..-..+ .+++..-+.+|...|++.++...+... ...+++....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 24556667777777777777766655332111 233444455666777777777666554 1113332221
Q ss_pred HH----HHHHh-hcCCHHHHHHHHHHHh
Q 036340 504 AL----LGACR-VHNNVELAQVAAEALM 526 (579)
Q Consensus 504 ~l----~~~~~-~~~~~~~A~~~~~~~~ 526 (579)
.+ +..+. ..+++..|...|-++.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 11 12234 5667777766655554
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.33 E-value=4 Score=44.37 Aligned_cols=52 Identities=8% Similarity=0.154 Sum_probs=28.3
Q ss_pred HHHHHHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccC
Q 036340 65 TVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117 (579)
Q Consensus 65 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 117 (579)
.++..+...|.++-+..+..... .++..-..++.++...|++++|.+.|++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444555555555555444332 33333345556666666666666666654
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.07 E-value=3.8 Score=38.90 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=60.9
Q ss_pred HHHHHHhhccCChHHHHHHHHhCC-----CCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHhh---cCCCCC----CC
Q 036340 471 ASLVDIVGRHGRLEDAMDLIKGMP-----FEPD---KAVWGALLGACRVHNNVELAQVAAEALMK---VEPENS----TP 535 (579)
Q Consensus 471 ~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~p~~~----~~ 535 (579)
..|+..+...|++.+|.+++..+. ..+. ...+...++.|...+|+..|...+.++.. ..+..+ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 467778888888888888887762 1111 23555566778888888888888888742 122222 24
Q ss_pred chhhhhhhhhcCCchHHHHHHHHHH
Q 036340 536 YVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
+...+..+...++|.+|...|.++-
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5666777788888888887776653
No 254
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.57 E-value=18 Score=35.98 Aligned_cols=402 Identities=11% Similarity=-0.013 Sum_probs=194.8
Q ss_pred ccCCHHHHHHHhhcCCCCchhhHHHHHHHHH--hcCChhhHHHHHccCCCC-Cc-chHHHHHHHHHhCCCHHHHHHHHHH
Q 036340 72 KTGEMEEALRLFNSMPARNVVSWNAMISGFL--QNGDVANAIEFFDRMPGR-DS-ASLSALVSGLIQNGELDEAARVLVK 147 (579)
Q Consensus 72 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~-~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 147 (579)
+.|++..+.++...+...-...|...-..-. ......+...++++.... -. ..-...+..+.+.+++...+..+..
T Consensus 18 ~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~ 97 (618)
T 1qsa_A 18 DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE 97 (618)
T ss_dssp HTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS
T ss_pred HCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCcccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC
Confidence 5677777777766664221222211111111 122455666666654431 11 1223344555666666655553321
Q ss_pred hccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 036340 148 CGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAKAGDVVSAREIFEQ 227 (579)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 227 (579)
.|.+...-.....+....|+..+|....+.+- ..| ...+..+..++..+.+.|.....
T Consensus 98 -------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW--------~~~-~~~p~~c~~l~~~~~~~g~lt~~------ 155 (618)
T 1qsa_A 98 -------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW--------LTG-KSQPNACDKLFSVWRASGKQDPL------ 155 (618)
T ss_dssp -------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------SCS-SCCCTHHHHHHHHHHHTTCSCHH------
T ss_pred -------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH--------hCC-CCCcHHHHHHHHHHHHCCCCCHH------
Confidence 24445555556666666777655554444432 111 22334566666666655543221
Q ss_pred cCCCChhHHHHHHHHHHhcCChHHHHHHhhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHccCCCCChhh---HHHHHH
Q 036340 228 MLERDTFSWNTMISGYIHVLDMEEASNLFVKMPHPDTL-TWNAMVSGYAQIGNLELALDFFKRMPQKNLVS---WNSMIA 303 (579)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~ 303 (579)
..-.-+......|+...|..+...+ +++.. ....++..+.. ...+....... .++... +..-+.
T Consensus 156 -------~~~~R~~~al~~~~~~~a~~l~~~l-~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~ 223 (618)
T 1qsa_A 156 -------AYLERIRLAMKAGNTGLVTVLAGQM-PADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFA 223 (618)
T ss_dssp -------HHHHHHHHHHHTTCHHHHHHHHHTC-CGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHCCCHHHHHHHHHhC-CHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHH
Confidence 1112224455566667776666655 23322 22333333332 33333333332 222221 111222
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCChhhHH----HHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHHHhhhcCC
Q 036340 304 GCETNKDYEGAIKLFIQMQVEGEKPDRHTFS----SILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALITMYARCGA 379 (579)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 379 (579)
-+. ..+.+.|...+........ .+..... .+.......+....+...+..... ...+.......+....+.|+
T Consensus 224 rla-r~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 224 SVA-RQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-RSQSTSLIERRVRMALGTGD 300 (618)
T ss_dssp HHH-HHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTC
T ss_pred HHH-hcCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-cCCChHHHHHHHHHHHHCCC
Confidence 233 3478999999988875442 2332222 222334444524444445444222 22344444555555667899
Q ss_pred HHHHHHHHHhccCCC-C-eeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHh
Q 036340 380 IVEARIIFEEMKLLK-N-VVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457 (579)
Q Consensus 380 ~~~A~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 457 (579)
++.|...|..+...+ + ....-=+..++...|+.++|..+|+.+... . +|..++. ..+.|.... .
T Consensus 301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lA-a~~Lg~~~~-------~ 366 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVA-AQRIGEEYE-------L 366 (618)
T ss_dssp HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHH-HHHTTCCCC-------C
T ss_pred HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHH-HHHcCCCCC-------C
Confidence 999999999986322 1 222233556777889999999999998741 2 2332221 112221000 0
Q ss_pred HHhhCCCCC-cc-----hhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 036340 458 VNEYGIEPR-IE-----HFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525 (579)
Q Consensus 458 ~~~~~~~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 525 (579)
......+. .. ....-+..+...|....|...+..+....+......+.......|.+..++....+.
T Consensus 367 -~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 367 -KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp -CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred -CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 00000010 00 111234456678888888777666522334444445555556677777776655443
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.46 E-value=11 Score=33.64 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=64.0
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHH----HHHHhHhCCCCCChhhHHHHHHHh
Q 036340 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE----LFKSMRSFKVLPTYITFISVLSAC 441 (579)
Q Consensus 366 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~~~~~~~~p~~~~~~~l~~~~ 441 (579)
.|.++..-|.+.+++++|.+++-.-. ..+.+.|+...|.+ +++-+.+.+++++......++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34556666778888888888765432 23444455444333 334455556777776666666655
Q ss_pred cccCc--HHHHHHHHHHhH---HhhCCCC--CcchhHHHHHHhhccCChHHHHHHH
Q 036340 442 AHAGL--VEEGRQHFKSMV---NEYGIEP--RIEHFASLVDIVGRHGRLEDAMDLI 490 (579)
Q Consensus 442 ~~~~~--~~~a~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 490 (579)
..... .+. ..+.++++ .+.+-.| ++.....++..|.+.+++.+|...|
T Consensus 105 ~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 44332 111 11222221 1223223 5677778888888888888887776
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.42 E-value=0.57 Score=43.70 Aligned_cols=67 Identities=19% Similarity=0.041 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHH-----hCCCCCCCc
Q 036340 503 GALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK-----SNNIKKPTG 569 (579)
Q Consensus 503 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 569 (579)
..++.++...|++++++..++.+...+|-+-..+..|+.+|.+.|+..+|++.|+++. +.|+.|.+.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3445556667777777777777777777777777777777777777777777776653 346655544
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.17 E-value=1.8 Score=30.39 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=46.1
Q ss_pred CchHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHH
Q 036340 310 DYEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALIT 372 (579)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 372 (579)
|.-+..+-++.+....+.|++......+.+|.+.+++..|.++++..+....+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344566666777777788888888888888888888888888888866655555556666553
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.62 E-value=19 Score=34.06 Aligned_cols=94 Identities=9% Similarity=0.088 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhC--CCCCC---hhhHHHHHHHhcccCcHHHHHHHHHHhHHhh-CCCCC----cch
Q 036340 400 NAMIGGCASHGFATEALELFKSMRSF--KVLPT---YITFISVLSACAHAGLVEEGRQHFKSMVNEY-GIEPR----IEH 469 (579)
Q Consensus 400 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~ 469 (579)
..|...+...|++.+|..++..+... |..+. ...+...++.|...+++.+|..++.++.... ...++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45777888899999999999887642 22221 1255666778889999999999988874321 12222 235
Q ss_pred hHHHHHHhhccCChHHHHHHHHhC
Q 036340 470 FASLVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 470 ~~~l~~~~~~~g~~~~A~~~~~~~ 493 (579)
+...+..+...+++.+|-+.|.++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 566777788899999988877665
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.49 E-value=4.8 Score=28.27 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHH
Q 036340 412 ATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLV 474 (579)
Q Consensus 412 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 474 (579)
.-+..+-+..+....+.|++......+++|.+.+++..|.++++.+..+.+ +...+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHH
Confidence 345666667777777888888888888888888888888888887765533 2234565554
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.46 E-value=7.1 Score=42.43 Aligned_cols=82 Identities=7% Similarity=-0.031 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCh----hHHHHHHHHHHhcCChHHHHHHhhcCC--CCChhhHHHHH
Q 036340 202 IVSWNSMIMCYAKAGDVVSAREIFEQMLE----RDT----FSWNTMISGYIHVLDMEEASNLFVKMP--HPDTLTWNAMV 271 (579)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~ 271 (579)
..-|..++..+.+.+.++.+.++-...++ .+. ..|..+.+.+...|++++|...+-.+. ..-......|+
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV 978 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34566777777788887777766655432 221 246777788888888888877775543 12234456666
Q ss_pred HHHHhcCCHHHH
Q 036340 272 SGYAQIGNLELA 283 (579)
Q Consensus 272 ~~~~~~g~~~~A 283 (579)
..+++.|..+.-
T Consensus 979 ~~lce~~~~~~L 990 (1139)
T 4fhn_B 979 NQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHCCHHHH
T ss_pred HHHHhCCChhhh
Confidence 666666665443
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.12 E-value=6.8 Score=27.34 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=39.5
Q ss_pred HHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 036340 271 VSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEG 325 (579)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (579)
+..+.+.|++++|..+.+..--||...|..|... +.|-.+++..-+.++..+|
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 3457788888888888888888888888766544 6777777777776776554
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.97 E-value=18 Score=32.07 Aligned_cols=114 Identities=9% Similarity=-0.025 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHH----HHHHhHhCCCCCChhhHHHHHHHh
Q 036340 366 INNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALE----LFKSMRSFKVLPTYITFISVLSAC 441 (579)
Q Consensus 366 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~~~~~~~~p~~~~~~~l~~~~ 441 (579)
.|.++..-|.+.+++++|.+++..-. ..+.+.|+...|.+ +++-..+.+++++......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34566667778888888888765432 23445566555444 455555667777777776666655
Q ss_pred cccCcHH-HHHHHHHHhH---HhhCCC--CCcchhHHHHHHhhccCChHHHHHHHH
Q 036340 442 AHAGLVE-EGRQHFKSMV---NEYGIE--PRIEHFASLVDIVGRHGRLEDAMDLIK 491 (579)
Q Consensus 442 ~~~~~~~-~a~~~~~~~~---~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 491 (579)
.....-+ .=.+++++++ .+.+-. -++.....++..|.+.|++.+|...|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4322111 1122222222 111222 267788889999999999999988663
No 263
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.49 E-value=3.5 Score=38.32 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHH----hhCCCCCcchhHH
Q 036340 400 NAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN----EYGIEPRIEHFAS 472 (579)
Q Consensus 400 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~ 472 (579)
..++..+...|++++++..+..+.... +-+...+..++.++...|+..+|.+.|+.+.+ +.|+.|+..+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 345566677788888888777776431 23555777888888888888888887776533 4577777665443
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.35 E-value=4.9 Score=37.99 Aligned_cols=92 Identities=10% Similarity=-0.004 Sum_probs=46.8
Q ss_pred chhHHHHHHhhccCChHHHHHHHHhC-----CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCC--CCC----c
Q 036340 468 EHFASLVDIVGRHGRLEDAMDLIKGM-----PFEPDKAVWGALLGACRVHNNVELAQVAAEALMKVEPEN--STP----Y 536 (579)
Q Consensus 468 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~----~ 536 (579)
.+...++..|.+.|++++|.+.+.++ ....-...+..+++.+...+|+..+...++++....... +.. .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 34455666666666666666666555 112223345555566666666666666666665432111 111 1
Q ss_pred hhhhhhhhhcCCchHHHHHHHHH
Q 036340 537 VLLYNMYADVGRWDDANEVRLLM 559 (579)
Q Consensus 537 ~~l~~~~~~~g~~~~A~~~~~~~ 559 (579)
..-+..+...++|.+|...|-++
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHH
Confidence 12233445556666666665544
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.34 E-value=7.5 Score=27.13 Aligned_cols=72 Identities=21% Similarity=0.160 Sum_probs=40.7
Q ss_pred CChHHHHHHHhhCC-CCCcchHHHH--HHHHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccC
Q 036340 43 GFLEEARYLFDIMP-ERDCVTWNTV--ISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRM 117 (579)
Q Consensus 43 ~~~~~A~~~~~~~~-~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 117 (579)
...++|..+-+-+. .++ .-...+ +..+.++|+|++|..+.+...-||...|.+|- -.+.|-.+++..-+.++
T Consensus 20 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHH
Confidence 34667766555443 333 222223 33456777777777777777777777765553 23555555555555443
No 266
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=85.10 E-value=18 Score=31.40 Aligned_cols=18 Identities=6% Similarity=0.064 Sum_probs=8.0
Q ss_pred cchHHHHHHHHHHHhcCC
Q 036340 200 RNIVSWNSMIMCYAKAGD 217 (579)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~ 217 (579)
++..+-...+.++...|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 444444455555555554
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.98 E-value=7.9 Score=27.07 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=40.5
Q ss_pred CChHHHHHHHhhCC-CCCcchHHHH--HHHHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCC
Q 036340 43 GFLEEARYLFDIMP-ERDCVTWNTV--ISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPG 119 (579)
Q Consensus 43 ~~~~~A~~~~~~~~-~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 119 (579)
...++|..+-+-+. .++ .-...+ +..+.++|+|++|..+.+...-||...|.+|-. .+.|-.+++..-+.++..
T Consensus 21 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34666666555443 233 222223 334566777777777777777777776655532 345555555555544433
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.88 E-value=21 Score=31.91 Aligned_cols=166 Identities=11% Similarity=0.025 Sum_probs=96.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHHH----HHHHHcCCCCChhhHHHHHHhccC
Q 036340 267 WNAMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKLF----IQMQVEGEKPDRHTFSSILSMSSG 342 (579)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~ 342 (579)
|.++..-|.+.+++++|++++-. -...+.+.|+...+.++. +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34566668888999999887643 233455667766555544 455667888888888888877765
Q ss_pred CCchhhHHH-----HHHH-Hhhc--CCCCchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHH
Q 036340 343 IVDLHLGMQ-----IHQM-VTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATE 414 (579)
Q Consensus 343 ~~~~~~a~~-----~~~~-~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 414 (579)
....+..+. .... .+.+ ..-++.....+...|.+.+++.+|+..|-- ...+.+..+..++.-+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHhcCCcc
Confidence 543221111 1222 2222 334677888899999999999999888742 212233455444444433332111
Q ss_pred HHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHH
Q 036340 415 ALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVN 459 (579)
Q Consensus 415 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 459 (579)
++...-..++ -|.-.++...|..+++...+
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1111222222 34556788888877666654
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.76 E-value=24 Score=32.54 Aligned_cols=25 Identities=28% Similarity=0.155 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHc
Q 036340 300 SMIAGCETNKDYEGAIKLFIQMQVE 324 (579)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (579)
.++..|...|++.+|..++.++.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~ 128 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRE 128 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5678888999999999988888764
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.36 E-value=0.53 Score=40.27 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=38.4
Q ss_pred HhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCC
Q 036340 476 IVGRHGRLEDAMDLIKGM-PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVEPE 531 (579)
Q Consensus 476 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 531 (579)
.+.+.|++++|+..+... ...| |...-..++..++-.|++++|..-++...+++|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 345677777777766544 3344 5666666677777777777777777777777776
No 271
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.30 E-value=3.5 Score=41.84 Aligned_cols=120 Identities=17% Similarity=0.134 Sum_probs=78.5
Q ss_pred HHHHHHHHccCC-HHHHHHHhhcCC--CCchhhHH--HHHHHHHhcCC-hhhHHHHHccC-----------CCCCcc---
Q 036340 64 NTVISGYAKTGE-MEEALRLFNSMP--ARNVVSWN--AMISGFLQNGD-VANAIEFFDRM-----------PGRDSA--- 123 (579)
Q Consensus 64 ~~l~~~~~~~g~-~~~A~~~~~~~~--~~~~~~~~--~l~~~~~~~~~-~~~A~~~~~~~-----------~~~~~~--- 123 (579)
..++..+...|+ ++.|+.+|+++. .|...++. +++..+...++ --+|.+++.+. ...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 455666666666 588999999887 34333322 23333323222 22333333322 122211
Q ss_pred -------hHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 124 -------SLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 124 -------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
....-+..+...|+++-|+++-+++.. ..|.+..+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122224456679999999999999998 668888999999999999999999999998884
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.99 E-value=2.1 Score=36.69 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=42.8
Q ss_pred HHHHhCCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 130 SGLIQNGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
..+.+.|+++++++.+..-++ ..|.+...-..+++.+|-.|++++|.+-++...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR---~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445678888888888888777 567777778888888888888888888887765
No 273
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=82.72 E-value=23 Score=30.73 Aligned_cols=175 Identities=9% Similarity=-0.001 Sum_probs=78.1
Q ss_pred CCCcchHHHHHHHHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCCh----hhHHHHHcc--CCCCCcchHHHHHH
Q 036340 57 ERDCVTWNTVISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDV----ANAIEFFDR--MPGRDSASLSALVS 130 (579)
Q Consensus 57 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~--~~~~~~~~~~~l~~ 130 (579)
.+|+.+-...+..+.+.|..+....+.+.+..++.......+.++...|.. .....++.. ...++...-...+.
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~ 113 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIE 113 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 455555445555555555544333334434455555544555555555532 222233321 12344444444455
Q ss_pred HHHhCCC-----HHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHH
Q 036340 131 GLIQNGE-----LDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSW 205 (579)
Q Consensus 131 ~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (579)
++...+. ...+...+..+.. .++..+-...+.++...|+.+ +...+..+. . .++..+-
T Consensus 114 aL~~l~~~~~~~~~~~~~~L~~~l~-----d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l--------~---d~~~~vr 176 (280)
T 1oyz_A 114 STAQRCKKNPIYSPKIVEQSQITAF-----DKSTNVRRATAFAISVINDKA-TIPLLINLL--------K---DPNGDVR 176 (280)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHTT-----CSCHHHHHHHHHHHHTC---C-CHHHHHHHH--------T---CSSHHHH
T ss_pred HHHHHhccCCcccHHHHHHHHHHhh-----CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHH--------c---CCCHHHH
Confidence 5544431 3445555555544 334445555666666666533 333333332 0 3444455
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHhc-CCCChhHHHHHHHHHHhcCC
Q 036340 206 NSMIMCYAKAG-DVVSAREIFEQM-LERDTFSWNTMISGYIHVLD 248 (579)
Q Consensus 206 ~~l~~~~~~~~-~~~~A~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 248 (579)
...+.++...+ +...+...+..+ .+++...-...+.++...|+
T Consensus 177 ~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 177 NWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence 55555555544 122333333333 33455444445555555553
No 274
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.33 E-value=4.3 Score=30.30 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHHcCCCCChhhHHHHHHhccCCCchhhHHHHHHHHhhcCCCCchHHHHHHH
Q 036340 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMSSGIVDLHLGMQIHQMVTKTVIPDVPINNALIT 372 (579)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 372 (579)
.-+..+-++.+...++.|++......+.+|.+.+++..|..+++-.+.+..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 33455666666677788888888888888888888888888888866666666666666553
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.10 E-value=12 Score=28.04 Aligned_cols=60 Identities=13% Similarity=0.274 Sum_probs=43.4
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCCcchhHHHHH
Q 036340 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPRIEHFASLVD 475 (579)
Q Consensus 414 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 475 (579)
+..+-+..+....+.|++......+++|.+.+++..|.++++.+..+.+ +...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4556666777777888888888888888888888888888887765533 33455665543
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.80 E-value=37 Score=30.07 Aligned_cols=165 Identities=8% Similarity=0.057 Sum_probs=87.7
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhCCCchHHHHH----HHHHHHcCCCCChhhHHHHHHhccCCC
Q 036340 269 AMVSGYAQIGNLELALDFFKRMPQKNLVSWNSMIAGCETNKDYEGAIKL----FIQMQVEGEKPDRHTFSSILSMSSGIV 344 (579)
Q Consensus 269 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~ 344 (579)
++..-|.+.+++++|++++.. -...+.+.|+...|-++ .+-..+.++.++......++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 355556666777777776542 22334455665554443 344455677777777777776654432
Q ss_pred chh-----hHHHHHHH-Hhhc--CCCCchHHHHHHHHhhhcCCHHHHHHHHHhccCCCCeeeHHHHHHHHHhc---CChH
Q 036340 345 DLH-----LGMQIHQM-VTKT--VIPDVPINNALITMYARCGAIVEARIIFEEMKLLKNVVSWNAMIGGCASH---GFAT 413 (579)
Q Consensus 345 ~~~-----~a~~~~~~-~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~ 413 (579)
..+ -....... .+.+ ..-++.....+...|.+.|++.+|+..|---. ..++..+..++.-+... |...
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCCCcc
Confidence 211 11112222 1121 22467788889999999999999888775221 11333444444433332 3222
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 036340 414 EALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSMVNE 460 (579)
Q Consensus 414 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 460 (579)
++--+ .-..++ -|.-.|+...|..+++...+.
T Consensus 186 e~dlf--------------~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 186 TVAEF--------------FSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHH--------------HHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred hHHHH--------------HHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 21111 111122 344668888888888877554
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.31 E-value=7 Score=36.90 Aligned_cols=96 Identities=9% Similarity=-0.147 Sum_probs=60.0
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhcc-----CCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHh---CCCCCChhh--H
Q 036340 365 PINNALITMYARCGAIVEARIIFEEMK-----LLKNVVSWNAMIGGCASHGFATEALELFKSMRS---FKVLPTYIT--F 434 (579)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~p~~~~--~ 434 (579)
.+...++..|.+.|+++.|.+.|.++. ...-...+...++.+...+++..+...+.+... .+-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356677888888888888888887774 111233466677777778888888877777643 222232221 1
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHh
Q 036340 435 ISVLSACAHAGLVEEGRQHFKSMVNE 460 (579)
Q Consensus 435 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 460 (579)
..-+..+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11222445667788888877777654
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.07 E-value=23 Score=28.83 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=41.9
Q ss_pred cCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC
Q 036340 409 HGFATEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465 (579)
Q Consensus 409 ~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 465 (579)
.+....+.++|..|...|+--... -|......+...|++.+|.++|+.-++. +-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 344668888888888888766554 6677777788888888888888887765 5555
No 279
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.74 E-value=11 Score=36.09 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=48.9
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCCCc---hhhHHHHHHHHhhCCCHHHHHHHHccccccC
Q 036340 123 ASLSALVSGLIQNGELDEAARVLVKCGSRCDGGEDL---VRAYNTLIVGYGQRGRVEEARKLFDKIPVNC 189 (579)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 189 (579)
..++.+++.|...+.++.|..+..+..--. ...++ ...+..++..+.-.+++.+|.+.+..+...+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~-~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPH-TDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCT-TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCc-ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 457788899999999999999999975311 11111 2234567888888999999999999887444
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.89 E-value=43 Score=25.83 Aligned_cols=52 Identities=10% Similarity=0.172 Sum_probs=39.7
Q ss_pred HHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC
Q 036340 413 TEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465 (579)
Q Consensus 413 ~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 465 (579)
+.+.++|..|...|+-.... -|......+...|++.+|.++|+.-++. +-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 34788888888888766554 6777777788889999999998887765 5555
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.63 E-value=29 Score=28.24 Aligned_cols=50 Identities=10% Similarity=-0.032 Sum_probs=35.9
Q ss_pred cCChHHHHHHHHhC---CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcC
Q 036340 480 HGRLEDAMDLIKGM---PFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVE 529 (579)
Q Consensus 480 ~g~~~~A~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 529 (579)
++...++.++|.-| ++.. -...|...+..+-..|++.+|..+|+..++..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34466777777766 3322 45577777788888899999999998888754
No 282
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=60.83 E-value=98 Score=28.08 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHhhCCCCC
Q 036340 28 SWNVMISGYISSRGSGFLEEARYLFDIMPERD 59 (579)
Q Consensus 28 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 59 (579)
....++.-|...++ .++|...++.+..|.
T Consensus 56 ~~~~ii~EYf~~~d---~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 56 TLTPIIQEYFEHGD---TNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHHCC---HHHHHHHHHTTTCCG
T ss_pred HHHHHHHHHhcCCC---HHHHHHHHHHhCCch
Confidence 45566666777766 777777777776443
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.90 E-value=61 Score=25.39 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=37.7
Q ss_pred HHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC
Q 036340 414 EALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR 466 (579)
Q Consensus 414 ~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 466 (579)
.+.++|..|...|+-.... -|......+...|++.+|.++|+.-++. +-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 3667888888877766544 6666677777888888888888877765 55553
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.96 E-value=62 Score=24.93 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhhc
Q 036340 499 KAVWGALLGACRVHNNVELAQVAAEALMKV 528 (579)
Q Consensus 499 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 528 (579)
...|......+-..|++.+|..+|+..++.
T Consensus 101 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 101 SPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 445556666666667777777777766654
No 285
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.56 E-value=1.3e+02 Score=31.81 Aligned_cols=85 Identities=9% Similarity=0.102 Sum_probs=53.4
Q ss_pred HHHHHHccCCHHHHHHHhhcCCCCchhhHHHHHHHHHhcCChhhHHHHHccCCCC----C--------------------
Q 036340 66 VISGYAKTGEMEEALRLFNSMPARNVVSWNAMISGFLQNGDVANAIEFFDRMPGR----D-------------------- 121 (579)
Q Consensus 66 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-------------------- 121 (579)
++..+...|.++-|.++..... .++..-..++.+|...|++++|.+.|++.-.. +
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~ 894 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN 894 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCS
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccc
Confidence 5556666777777776665554 34444456677788888888888888765320 0
Q ss_pred --cchHHHHHHHHHhCCCHHHHHHHHHHhccC
Q 036340 122 --SASLSALVSGLIQNGELDEAARVLVKCGSR 151 (579)
Q Consensus 122 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 151 (579)
..-|..++..+-+.+.++.+.++-+.+++.
T Consensus 895 ~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 895 LLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 012445566666677777777766666653
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.29 E-value=43 Score=32.09 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=35.6
Q ss_pred hhHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCCC-c------chhHHHHHHhhccCChHHHHHHHHhC
Q 036340 432 ITFISVLSACAHAGLVEEGRQHFKSMVNEYGIEPR-I------EHFASLVDIVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~------~~~~~l~~~~~~~g~~~~A~~~~~~~ 493 (579)
..++.+++.|...+.++.|..+..+.. ++.. . ..+..++..+.-.+++.+|.+.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 356777777777788888877776552 1211 1 11223456666777777777776654
No 287
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=45.73 E-value=50 Score=26.61 Aligned_cols=44 Identities=11% Similarity=0.121 Sum_probs=25.3
Q ss_pred HHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCc
Q 036340 506 LGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRW 549 (579)
Q Consensus 506 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 549 (579)
+..|.+.|.+++|.+++++..+..|.+...-..|..+-.+..-+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~ 167 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTF 167 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTT
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCC
Confidence 35588888888888888888877766555444444444443333
No 288
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=45.63 E-value=77 Score=22.32 Aligned_cols=82 Identities=12% Similarity=0.066 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchHHHHHHHHHHHh
Q 036340 135 NGELDEAARVLVKCGSRCDGGEDLVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIVSWNSMIMCYAK 214 (579)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 214 (579)
....++|..+-+.+... +. ...+-..-+..+...|++++|..+.+..- .||...|..|.. .+
T Consensus 20 ~H~HqEA~tIAdwL~~~--~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c------------~pdlepw~ALce--~r 81 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLK--GE--EEAVQLIRLSSLMNRGDYASALQQGNKLA------------YPDLEPWLALCE--YR 81 (116)
T ss_dssp TTCHHHHHHHHHHHHHT--TC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC------------CGGGHHHHHHHH--HH
T ss_pred chHHHHHHHHHHHHHhC--Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC------------CchHHHHHHHHH--Hh
Confidence 34567777777766553 22 22222333455778899999999988875 788888866544 57
Q ss_pred cCCHHHHHHHHHhcCCCChh
Q 036340 215 AGDVVSAREIFEQMLERDTF 234 (579)
Q Consensus 215 ~~~~~~A~~~~~~~~~~~~~ 234 (579)
.|-.+++...+..+-..+..
T Consensus 82 lGl~s~le~rL~~la~sg~p 101 (116)
T 2p58_C 82 LGLGSALESRLNRLARSQDP 101 (116)
T ss_dssp HTCHHHHHHHHHHHTTCCCH
T ss_pred cccHHHHHHHHHHHHhCCCH
Confidence 78888888777666555433
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.87 E-value=82 Score=26.15 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=34.0
Q ss_pred HHHHHHHHHhHhCCCCCChh-hHHHHHHHhcccCcHHHHHHHHHHhHHhhCCCC
Q 036340 413 TEALELFKSMRSFKVLPTYI-TFISVLSACAHAGLVEEGRQHFKSMVNEYGIEP 465 (579)
Q Consensus 413 ~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 465 (579)
+.+.++|..|...|+--... -|......+...|++.+|..+|+.-++. +-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 45566777777776655544 5566666667777777777777776655 4455
No 290
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=43.12 E-value=1.8e+02 Score=25.82 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=40.3
Q ss_pred HHhCCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHh
Q 036340 490 IKGMPFEPDK--AVWGALLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKS 561 (579)
Q Consensus 490 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (579)
|...+..|.. .++...+....+.+++..|..+.++++++.|.. ...++|.+++....+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~ 255 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADS 255 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHT
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhc
Confidence 3444555533 355666777889999999999999999999852 133557777666543
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.06 E-value=86 Score=24.54 Aligned_cols=50 Identities=6% Similarity=-0.019 Sum_probs=31.0
Q ss_pred cCChHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhhcC
Q 036340 480 HGRLEDAMDLIKGMPFEP-DKAVWGALLGACRVHNNVELAQVAAEALMKVE 529 (579)
Q Consensus 480 ~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 529 (579)
+++..+....+..-++.. -...|...+..+-..|++.+|..+|+..++..
T Consensus 76 ~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 76 CNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp CSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344444433333333333 45566777777778888888888888888654
No 292
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=39.79 E-value=1.3e+02 Score=24.24 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=27.9
Q ss_pred hhhHHHHHccCCCCCcchH--------HHHHHHHHhCCCHHHHHHHHHHhccC
Q 036340 107 VANAIEFFDRMPGRDSASL--------SALVSGLIQNGELDEAARVLVKCGSR 151 (579)
Q Consensus 107 ~~~A~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~ 151 (579)
++.|+.+|+.+...-...+ ...+..|.+.|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 4567777777755322111 12445677888888888888887664
No 293
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.02 E-value=47 Score=31.85 Aligned_cols=56 Identities=18% Similarity=0.079 Sum_probs=40.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHH
Q 036340 505 LLGACRVHNNVELAQVAAEALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMK 560 (579)
Q Consensus 505 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (579)
++....-...++.|...|.++..+.|++..+|+.|+.+....|+.-+|.-++-+..
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 33444445567788888888888888888888888888888887777665555443
No 294
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.56 E-value=2.7e+02 Score=29.52 Aligned_cols=89 Identities=9% Similarity=-0.007 Sum_probs=54.9
Q ss_pred HHHHHHhcCChhhHHHHHccCCCCCcchHHHHHHHHHhCCCHHHHHHHHHHhccCCCCCC----C---------------
Q 036340 97 MISGFLQNGDVANAIEFFDRMPGRDSASLSALVSGLIQNGELDEAARVLVKCGSRCDGGE----D--------------- 157 (579)
Q Consensus 97 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~--------------- 157 (579)
++..+...|.++-|.++..-++. ++..-..++.++...|++++|.+.|+++-..-.... .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~ 894 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN 894 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCS
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccc
Confidence 55666777777777776655554 444445677888889999999999988654210000 0
Q ss_pred -chhhHHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 158 -LVRAYNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 158 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
....|..++..+-+.+-++-+.++-+.++
T Consensus 895 ~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI 924 (950)
T 4gq2_M 895 LLSCYYLHLSKKLFEESAYIDALEFSLLAD 924 (950)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 01135556666666666666665555554
No 295
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=35.15 E-value=2.9e+02 Score=26.04 Aligned_cols=140 Identities=16% Similarity=0.018 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHhccCCCCeeeHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhcccCcHHHHHHHHHHh
Q 036340 378 GAIVEARIIFEEMKLLKNVVSWNAMIGGCASHGFATEALELFKSMRSFKVLPTYITFISVLSACAHAGLVEEGRQHFKSM 457 (579)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 457 (579)
.+.+-|.++..+...+--...|..-...+...|++++|-++.-.... |+--+..|.+.+-..=...|+..-.+.+|..+
T Consensus 343 ~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~L 421 (494)
T 1bpo_A 343 QNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGIL 421 (494)
T ss_dssp CCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 45555555555554222222344445566667777777766655443 44445555555544444555555566666666
Q ss_pred HHhhCCCCCcchhHHHHHHhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 036340 458 VNEYGIEPRIEHFASLVDIVGRHGRLEDAMDLIKGMPFEPDKAVWGALLGACRVHNNVELAQVAAEAL 525 (579)
Q Consensus 458 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 525 (579)
++. + ..+..--..+++....+|+.+-..+.+.+-+...+...=..+ +..|..-|..+|.++
T Consensus 422 l~~-g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 422 LDQ-G-QLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHH-S-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred hcc-C-ccchHHhhHHhHHHHhccHHHHHHHHHhcCCccccHHhHhhh-----hhcCHHHHHHHHHHc
Confidence 554 2 223322234555566677777777777665554444322211 333555666666554
No 296
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=33.22 E-value=2.4e+02 Score=27.24 Aligned_cols=68 Identities=13% Similarity=0.075 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHH----HH-HHhhcCCCCCCCchhhhhhhhhcCCchHHHHHHHHHHhCC
Q 036340 496 EPDKAVWGALLGACRVHNNVELAQVA----AE-ALMKVEPENSTPYVLLYNMYADVGRWDDANEVRLLMKSNN 563 (579)
Q Consensus 496 ~~~~~~~~~l~~~~~~~~~~~~A~~~----~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (579)
.+|......+...+..+|..++-+++ ++ -+.+..|++......|-.-|.+.|++-+|.+++-.+...+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 45666666666777776665543221 11 1112446665555666667778888999988888887664
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.66 E-value=1.7e+02 Score=24.56 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=14.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHH
Q 036340 301 MIAGCETNKDYEGAIKLFIQMQ 322 (579)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~ 322 (579)
-+..+....++++|.+++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3556667777777777776654
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.43 E-value=1.9e+02 Score=22.82 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=10.5
Q ss_pred HHhcCCHHHHHHHHccCC
Q 036340 274 YAQIGNLELALDFFKRMP 291 (579)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~ 291 (579)
.+..|+.+....++..-.
T Consensus 12 A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHTTCHHHHHHHHTCTT
T ss_pred HHHhccHHHHHHHHHcCC
Confidence 345566666666665443
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.22 E-value=90 Score=26.26 Aligned_cols=90 Identities=19% Similarity=0.071 Sum_probs=43.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHhccCCCCCCC----chhhHHHHHHHHhhCCCHHHHHHHHccccccCCCCCCCccCCcchH
Q 036340 128 LVSGLIQNGELDEAARVLVKCGSRCDGGED----LVRAYNTLIVGYGQRGRVEEARKLFDKIPVNCDRGEGNVRFKRNIV 203 (579)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (579)
-+..+....++++|.+.+++..+...+.++ ........+..-.....-.-+..+.+.+. . .++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~--------~---~~~~~ 92 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL--------S---SNEIV 92 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH--------T---CSSHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH--------h---cCCHH
Confidence 355666677777777776655432111111 11122223333333333333334444442 1 33344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc
Q 036340 204 SWNSMIMCYAKAGDVVSAREIFEQM 228 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (579)
.....+..+.+.|+.++|.++|-+.
T Consensus 93 ~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 93 HLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChhHHHHHHHHH
Confidence 4555667777778877777777543
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.04 E-value=1.3e+02 Score=22.31 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=18.4
Q ss_pred HHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 162 YNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 162 ~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
...++.=|...|+.++|...++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4556666777788888888888774
No 301
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.65 E-value=1.1e+02 Score=25.13 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=11.9
Q ss_pred HhhccCChHHHHHHHHhC
Q 036340 476 IVGRHGRLEDAMDLIKGM 493 (579)
Q Consensus 476 ~~~~~g~~~~A~~~~~~~ 493 (579)
++.+.|.+++|.+++++.
T Consensus 123 VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHH
Confidence 455667777777776665
No 302
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=29.56 E-value=2.6e+02 Score=23.62 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHccCC-C---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC
Q 036340 273 GYAQIGNLELALDFFKRMP-Q---KNLVSWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPD 329 (579)
Q Consensus 273 ~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 329 (579)
..+..|+.+-...+++... . .+....+.+.. .+..++.....++.+.+.+.|..++
T Consensus 154 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCC
Confidence 3445566666666665421 1 22222222222 2334444444555555666655443
No 303
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.26 E-value=1.1e+02 Score=21.30 Aligned_cols=38 Identities=18% Similarity=0.045 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHH
Q 036340 216 GDVVSAREIFEQMLERDTFSWNTMISGYIHVLDMEEAS 253 (579)
Q Consensus 216 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 253 (579)
...++|.++++.+..+++.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887666655543
No 304
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.12 E-value=2.4e+02 Score=24.22 Aligned_cols=41 Identities=10% Similarity=-0.027 Sum_probs=18.0
Q ss_pred hHHHHHHHhhCCCCCcchHHHHHHHHHccCCHHHHHHHhhc
Q 036340 45 LEEARYLFDIMPERDCVTWNTVISGYAKTGEMEEALRLFNS 85 (579)
Q Consensus 45 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (579)
.+-...+++.-..++...-.+.+...+..|+.+-+..+++.
T Consensus 44 ~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 44 VRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 55555555543322221112233334455665555555554
No 305
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.82 E-value=93 Score=19.27 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=7.0
Q ss_pred cCChHHHHHHHHHhHh
Q 036340 409 HGFATEALELFKSMRS 424 (579)
Q Consensus 409 ~~~~~~A~~~~~~~~~ 424 (579)
.|+.+.|+..+-.|..
T Consensus 36 ~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGE 51 (59)
T ss_dssp TTCHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHcCcC
Confidence 3444444444444443
No 306
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.53 E-value=1.5e+02 Score=22.41 Aligned_cols=43 Identities=7% Similarity=-0.049 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhc
Q 036340 298 WNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340 (579)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (579)
-..++..+...+.+-.|.++++.+.+.+...+..|....+..+
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 66 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVF 66 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 3344444444555556666666666555555555544444433
No 307
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.14 E-value=98 Score=21.53 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=15.2
Q ss_pred CHHHHHHHhhcCCCCchhhHHHHHHHHHhcCC
Q 036340 75 EMEEALRLFNSMPARNVVSWNAMISGFLQNGD 106 (579)
Q Consensus 75 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (579)
..+.|.++++.+....+.+|..++.++...|+
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCc
Confidence 34445555554444444444555554444343
No 308
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=25.00 E-value=2.5e+02 Score=23.72 Aligned_cols=15 Identities=7% Similarity=0.042 Sum_probs=7.5
Q ss_pred HHhcCChHHHHHHhh
Q 036340 243 YIHVLDMEEASNLFV 257 (579)
Q Consensus 243 ~~~~~~~~~a~~~~~ 257 (579)
....|+.+-+..+++
T Consensus 226 A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 226 AVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 334455555555554
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.99 E-value=2.3e+02 Score=20.92 Aligned_cols=61 Identities=10% Similarity=0.234 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCCChh---hHHHHHHHHHhCCC--chHHHHHHHHHHHcCCCC
Q 036340 268 NAMVSGYAQIGNLELALDFFKRMPQKNLV---SWNSMIAGCETNKD--YEGAIKLFIQMQVEGEKP 328 (579)
Q Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 328 (579)
..++.-|...|+.++|...++++..|... ....+..++-+.++ .+.+..++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34555566666666666666666544211 12222333333322 244556666666555443
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.61 E-value=1.2e+02 Score=23.40 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=17.7
Q ss_pred HHHHHHHHhhCCCHHHHHHHHcccc
Q 036340 162 YNTLIVGYGQRGRVEEARKLFDKIP 186 (579)
Q Consensus 162 ~~~l~~~~~~~g~~~~A~~~~~~~~ 186 (579)
...++.=|...|+.++|...++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4556666777777777777777774
No 311
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.23 E-value=2.2e+02 Score=23.41 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=11.3
Q ss_pred HhcccCcHHHHHHHHHHhH
Q 036340 440 ACAHAGLVEEGRQHFKSMV 458 (579)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~ 458 (579)
.|.+.|.+++|.+++++..
T Consensus 123 VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHS
T ss_pred HHHHhcchHHHHHHHHHHh
Confidence 4555666666666666554
No 312
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.42 E-value=82 Score=19.54 Aligned_cols=30 Identities=33% Similarity=0.283 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHcCCCCChhhHHHHHHhc
Q 036340 311 YEGAIKLFIQMQVEGEKPDRHTFSSILSMS 340 (579)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (579)
.++|.+.|.+|++..-.++..||...+..+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 467888888888776666777887777655
No 313
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.93 E-value=2.1e+02 Score=21.99 Aligned_cols=60 Identities=10% Similarity=0.237 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCCChh---hHHHHHHHHHhCCC--chHHHHHHHHHHHcCCC
Q 036340 268 NAMVSGYAQIGNLELALDFFKRMPQKNLV---SWNSMIAGCETNKD--YEGAIKLFIQMQVEGEK 327 (579)
Q Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 327 (579)
..++.-|...|+.++|...++++..|... ....+..++-+.++ .+.+..++..+...|+-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34555555666666666666665543211 12222233333222 23455566666555544
No 314
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.73 E-value=2.5e+02 Score=21.40 Aligned_cols=45 Identities=4% Similarity=0.020 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHhcc
Q 036340 297 SWNSMIAGCETNKDYEGAIKLFIQMQVEGEKPDRHTFSSILSMSS 341 (579)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (579)
.-..++..+...+.+-.|.++++.+.+.+...+..|....+..+.
T Consensus 28 qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 72 (150)
T 2xig_A 28 QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLE 72 (150)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 334445555555556667777777766655555555544444433
Done!