BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036343
(795 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 162 bits (409), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 149/319 (46%), Gaps = 39/319 (12%)
Query: 38 IDGERKILLSGSIHYPRSTPGMWPDLIKKAKEGGLDAIETYVFWNAHEPLRRQYDFTGNL 97
++GE ++ + IHYPR W IK K G + I YVFWN HEP +YDF G
Sbjct: 17 LNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYDFAGQK 76
Query: 98 DLIRFIKTIQDQGLYVILRIGPYVCAEWNYGGFPVWLHNMPGIEELRTTNKVFMNEMQNF 157
D+ F + Q+ G YVI+R GPYVCAEW GG P WL I +LR + + ++ F
Sbjct: 77 DIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDI-KLREQDPYYXERVKLF 135
Query: 158 TTLIVDMAKKEKLFASQGGPIILAQIENEYGNVMSDYGDAGKSYINWCAKMATSLDI-GV 216
+ + L S+GG II Q+ENEYG D K YI+ GV
Sbjct: 136 LNEV--GKQLADLQISKGGNIIXVQVENEYGAFGID-----KPYISEIRDXVKQAGFTGV 188
Query: 217 PWIMCQ-----ESDAPSPMFTPNN------------------PNSPKIWTENWTGWFKSW 253
P C E++A + N P++P +E W+GWF W
Sbjct: 189 PLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWFDHW 248
Query: 254 GGKDPKRTAEDLAFAVARFFQFGGTFQNYYMYHGGTNFGRTSGGPY-----LTTSYDYDA 308
G K R+AE+L +F + Y HGGT+FG G + TSYDYDA
Sbjct: 249 GAKHETRSAEELVKGXKEXLDRNISF-SLYXTHGGTSFGHWGGANFPNFSPTCTSYDYDA 307
Query: 309 PIDEYGHLNQPKWGHLREL 327
PI+E G + PK+ +R L
Sbjct: 308 PINESGKVT-PKYLEVRNL 325
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 31/103 (30%)
Query: 592 TWYKTTFEAPLENDPVVLNLQGMGKGFAWVNGYNLGRYWPTYLAEEDGCSTESCDYRGPY 651
+Y++TF D LN KG WVNG+ +GRYW
Sbjct: 509 AYYRSTFNLNELGD-TFLNXXNWSKGXVWVNGHAIGRYWEI------------------- 548
Query: 652 GSDKCAYNCGNPSQIWYHVPRSWIKDGVNTLVLFEEFGGNPSQ 694
P Q Y VP W+K G N +++ + G + ++
Sbjct: 549 ----------GPQQTLY-VPGCWLKKGENEIIILDXAGPSKAE 580
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 117/357 (32%), Positives = 166/357 (46%), Gaps = 49/357 (13%)
Query: 27 YRVSHDGRAITIDGERKILLSGSIHYPRSTPGMWPDLIKKAKEGGLDAIETYVFWNAHEP 86
+ + + + DG+ +SGSIHY R W D + K K GL+AI+TYV WN HEP
Sbjct: 9 FEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEP 68
Query: 87 LRRQYDFTGNLDLIRFIKTIQDQGLYVILRIGPYVCAEWNYGGFPVWLHNMPGIEELRTT 146
QY F+ + D+ F++ + GL VILR GPY+CAEW GG P WL I LR++
Sbjct: 69 WPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESI-LLRSS 127
Query: 147 NKVFMNEMQNFTTLIVDMAKKEKLFASQGGPIILAQIENEYGNVMS---DY--------- 194
+ ++ + + L V + K + L GGP+I Q+ENEYG+ + DY
Sbjct: 128 DPDYLAAVDKW--LGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFR 185
Query: 195 ---GD---------AGKSYINWCA--KMATSLDIGVPWIMCQESDAPSPMFTPN--NPNS 238
GD A K+++ A + T++D G S+ + P
Sbjct: 186 HHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGT------GSNITDAFLSQRKCEPKG 239
Query: 239 PKIWTENWTGWFKSWGGKDPKRTAEDLAFAVARFFQFGGTFQNYYMYHGGTNFGRTSGG- 297
P I +E +TGW WG E +A ++ G + N YM+ GGTNF +G
Sbjct: 240 PLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGASV-NLYMFIGGTNFAYWNGAN 298
Query: 298 -PYLT--TSYDYDAPIDEYGHLNQPKWGHLRELHKLLKSME-------KTLTYGNVT 344
PY TSYDYDAP+ E G L + + + K K E YG VT
Sbjct: 299 SPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTPKFAYGKVT 355
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 609 LNLQGMGKGFAWVNGYNLGRYWP 631
+ G KG W+NG+NLGRYWP
Sbjct: 548 IQFPGWTKGQVWINGFNLGRYWP 570
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 152 bits (384), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 146/311 (46%), Gaps = 41/311 (13%)
Query: 38 IDGERKILLSGSIHYPRSTPGMWPDLIKKAKEGGLDAIETYVFWNAHEPLRRQYDFTGNL 97
+DG+ +LSG+IHY R P W + K G + +ETYV WN HEP ++ F G+L
Sbjct: 12 LDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDL 71
Query: 98 DLIRFIKTIQDQGLYVILRIGPYVCAEWNYGGFPVWL--HNMPGIEELRTTNKVFMNEMQ 155
DL +F++ QD GLY I+R P++CAEW +GG P WL NM +R+++ ++ +
Sbjct: 72 DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLLTKNM----RIRSSDPAYIEAVG 127
Query: 156 NFTTLIVDMAKKEKLFASQGGPIILAQIENEYGNVMSD--YGDAGKSYINWCAKMATSLD 213
+ ++ GG I++ Q+ENEYG+ D Y A + + C
Sbjct: 128 RYYDQLLPRLVPRL--LDNGGNILMMQVENEYGSYGEDKAYLRAIRQLMEECGVTCPLFT 185
Query: 214 IGVPW-------IMCQE---------SDAP------SPMFTPNNPNSPKIWTENWTGWFK 251
PW + +E S AP F + P + E W GWF
Sbjct: 186 SDGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFWDGWFN 245
Query: 252 SWGGKDPKRTAEDLAFAVARFFQFGGTFQNYYMYHGGTNFGRTSGGPYL-------TTSY 304
W R ++LA AV + G N YM+HGGTNFG +G TSY
Sbjct: 246 RWKEPIITRDPKELADAVREVLEQGSI--NLYMFHGGTNFGFMNGCSARGTLDLPQVTSY 303
Query: 305 DYDAPIDEYGH 315
DYDA +DE G+
Sbjct: 304 DYDALLDEEGN 314
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 98/239 (41%), Gaps = 61/239 (25%)
Query: 462 LRINSSGQVLHAYVNGNYVDSQW-TKYGASNDLFERPVKLTRGKNQISLLSATVGLQNYG 520
LRI YV+G +V +Q+ T+ G D+F + K +G +++ +L +G NYG
Sbjct: 401 LRIIDGRDRAQLYVDGQWVKTQYQTEIG--EDIFYQGKK--KGLSRLDILIENMGRVNYG 456
Query: 521 SKF--DMVPNGIPGPVLLVGRAGDETIIKDLSSHKWTYKVGLYGLDDKKFYNAKAANSER 578
KF D GI R G + KDL +K LD N + + +
Sbjct: 457 HKFLADTQRKGI--------RTG---VCKDLH-FLLNWKHYPLPLD-----NPEKIDFSK 499
Query: 579 GWSSKNVPLNRRMTWYKTTFEAPLENDPVVLNLQGMGKGFAWVNGYNLGRYWPTYLAEED 638
GW+ Y T E P + L+L GKG A+VNG NLGR+W
Sbjct: 500 GWTQGQPAFYA----YDFTVEEPKD---TYLDLSEFGKGVAFVNGQNLGRFW-------- 544
Query: 639 GCSTESCDYRGPYGSDKCAYNCGNPSQIWYHVPRSWIKDGVNTLVLFEEFGGNPSQINF 697
N G ++ +P S++K+G N +++FE G +I+
Sbjct: 545 --------------------NVGPTLSLY--IPHSYLKEGANRIIIFETEGQYKEEIHL 581
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 160/373 (42%), Gaps = 54/373 (14%)
Query: 29 VSHDGRAITIDGERKILLSGSIH-YPRSTPGMWPDLIKKAKEGGLDAIETYVFWNAHEPL 87
V+ D +I ++GER ++ SG +H Y ++ D+ +K K G + + YV W E
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 88 RRQYDFTGNLDLIRFIKTIQDQGLYVILRIGPYVCAEWNYGGFPVWLHNMPGIEELRTTN 147
Y G DL F ++ G+Y++ R GPY+ AE + GGFP WL + GI LRT++
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI--LRTSD 123
Query: 148 KVFMNEMQNFTTLIVDMAKKEKLFASQGGPIILAQIENEYGNVMSDY-GDAGKSYINWCA 206
+ ++ N+ + I K ++ + GGPIIL Q ENEY Y G SY+ +
Sbjct: 124 EAYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIE 181
Query: 207 KMATSLDIGVPWIMCQE--------------------------SDAPSPMFTPN------ 234
A I VP+I D +P P+
Sbjct: 182 DHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTY 241
Query: 235 --------NPNSPKIWTENWTGWFKSWGGKDPKRTAEDLAFAVARF-----FQFGGTFQN 281
+P++P E G F WGG + A L R F FG F N
Sbjct: 242 FHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLN 301
Query: 282 YYMYHGGTNFGRTSGGPYLTTSYDYDAPIDEYGHLNQPKWGHLRELHKLLKSMEKTLTY- 340
YM GGTN+G G P TSYDY + I E ++ + K+ L+ L K L
Sbjct: 302 LYMIFGGTNWGNL-GHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLVAN 360
Query: 341 -GNVTNTDYGNSV 352
G+++ + Y N+
Sbjct: 361 PGDLSTSTYTNTA 373
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 152/371 (40%), Gaps = 53/371 (14%)
Query: 29 VSHDGRAITIDGERKILLSGSIHYPR-STPGMWPDLIKKAKEGGLDAIETYVFWNAHEPL 87
V+ D ++ + GER ++ SG +H R P ++ D+ K K G + + YV W E
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 88 RRQYDFTGNLDLIRFIKTIQDQGLYVILRIGPYVCAEWNYGGFPVWLHNMPGIEELRTTN 147
++ G L F + G+Y++ R GPY+ AE + GGFP WL + G +LRT
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG--KLRTDA 143
Query: 148 KVFMNEMQNFTTLIVDMAKKEKLFASQGGPIILAQIENEYGNVMSDYGDAGKSYINWCAK 207
+++ N+ I + K ++ + GGP+IL Q ENEY K Y+ +
Sbjct: 144 PDYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVID 201
Query: 208 MATSLDIGVPWIMCQE--------------------------SDAPSPMFTPNN------ 235
A + I VP I D P P+N
Sbjct: 202 QARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTW 261
Query: 236 --------PNSPKIWTENWTGWFKSWGGKDPKRTAEDLAFAVARFF-----QFGGTFQNY 282
P++P E G F +GG ++ + + R F G T N
Sbjct: 262 RQDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNI 321
Query: 283 YMYHGGTNFGRTSGGPYLTTSYDYDAPIDEYGHLNQPKWGHLRELHKLLKSMEK--TLTY 340
YM GGTN+G G P TSYDY A I E +++ K+ L+ + LK T T
Sbjct: 322 YMTFGGTNWGNL-GHPGGYTSYDYGASIREDRRIDREKYSELKLQGQFLKVSPGYITATP 380
Query: 341 GNVTNTDYGNS 351
N T Y +S
Sbjct: 381 ENATQGVYSDS 391
>pdb|3U7V|A Chain A, The Structure Of A Putative Beta-Galactosidase From
Caulobacter Crescentus Cb15
Length = 552
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 81/191 (42%), Gaps = 24/191 (12%)
Query: 29 VSHDGR-AITIDGERKILLSGSIH----YPRSTPGMWPDLIKKAKEGGLDAIETYVFWNA 83
V+ DGR A+ +DG + L+ ++ +P +WP + K G + ++ + W
Sbjct: 43 VTKDGRHALXVDGAPFLXLAAQVNNSSAWPSQXAKVWPAIEKV----GANTVQVPIAWEQ 98
Query: 84 HEPLRRQYDFTGNLDLIRFIKTIQDQGLYVILRIGPYVCAEWNYGGFPVWL----HNMPG 139
EP+ Q+DF+ LDL+ + + + V+L G + + +Y P W+ P
Sbjct: 99 IEPVEGQFDFS-YLDLL-LEQARERKVRLVLLWFGTWKNSSPSYA--PEWVKLDDKRFPR 154
Query: 140 I-----EELRTTNKVFMNEMQNFTTLIVDMAKKEKLFASQGGPIILAQIENEYGNVMS-- 192
+ E + + + + + V + K + +I Q+ENE G S
Sbjct: 155 LIKDDGERSYSXSPLAKSTLDADRKAFVALXTHLKAKDAAQKTVIXVQVENETGTYGSVR 214
Query: 193 DYGDAGKSYIN 203
D+G A + N
Sbjct: 215 DFGPAAQKVFN 225
>pdb|1B30|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
1,2- (4-Deoxy-Beta-L-Threo-Hex-4-Enopyranosyluronic
Acid)-Beta- 1,4-Xylotriose)
pdb|1B31|A Chain A, Xylanase From Penicillium Simplicissimum, Native With
Peg200 As Cryoprotectant
pdb|1B3V|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylose
pdb|1B3W|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylobiose
pdb|1B3X|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotriose
pdb|1B3Y|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotetraose
pdb|1B3Z|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylopentaose
pdb|1BG4|A Chain A, Xylanase From Penicillium Simplicissimum
Length = 302
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 24/152 (15%)
Query: 64 IKKAKEGGLDAIETYVFWNAHEPLRRQYDFTGNLDLIRFIKTIQDQGLYVILRIGPYVCA 123
I KA G L E + W+A EP R Q+ F+G+ L+ F Q G +
Sbjct: 36 IIKADFGQLTP-ENSMKWDATEPNRGQFTFSGSDYLVNF---AQSNGKLI---------- 81
Query: 124 EWNYGGFPVWLHNMPGIEELRTTNKVFMNEMQNFTTLIVDMAKKEKLFASQGGPIILAQI 183
G VW +PG T ++ ++N T ++ K K++A +L +I
Sbjct: 82 ---RGHTLVWHSQLPGWVSSITDKNTLISVLKNHITTVM-TRYKGKIYAWD----VLNEI 133
Query: 184 ENEYGNVMSD--YGDAGKSYINWCAKMATSLD 213
NE G++ + Y G+ Y+ + A S+D
Sbjct: 134 FNEDGSLRNSVFYNVIGEDYVRIAFETARSVD 165
>pdb|2EBS|A Chain A, Crystal Structure Anaalysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
D465n Mutant Complexed With A Xyloglucan Heptasaccharide
pdb|2EBS|B Chain B, Crystal Structure Anaalysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
D465n Mutant Complexed With A Xyloglucan Heptasaccharide
Length = 789
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 131 PVWLHNMPGIEE-----LRT--TNKVFMNEMQNFTTLIVD-MAKKEKLF-ASQGGPIILA 181
P W + GIEE LR+ + ++ + N + + D + K +K+F A Q +
Sbjct: 433 PSWYLQIDGIEENAILSLRSPKSGAALLSGIGNISGMKHDDLTKPQKMFGAPQFSNLDSI 492
Query: 182 QIENEYGNVMSDYGDAGKSYINWCAKMATSLDIGVPWIM 220
+ NV+ G +G Y + CA+ A + D G W +
Sbjct: 493 DAAGNFPNVVVRAGSSGHEYDSACARGAYATDGGDAWTI 531
>pdb|1SQJ|A Chain A, Crystal Structure Analysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
pdb|1SQJ|B Chain B, Crystal Structure Analysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
Length = 789
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 131 PVWLHNMPGIEE-----LRT--TNKVFMNEMQNFTTLIVD-MAKKEKLF-ASQGGPIILA 181
P W + GIEE LR+ + ++ + + + + D + K +K+F A Q +
Sbjct: 433 PSWYLQIDGIEENAILSLRSPKSGAALLSGIGDISGMKHDDLTKPQKMFGAPQFSNLDSI 492
Query: 182 QIENEYGNVMSDYGDAGKSYINWCAKMATSLDIGVPWIM 220
+ NV+ G +G Y + CA+ A + D G W +
Sbjct: 493 DAAGNFPNVVVRAGSSGHEYDSACARGAYATDGGDAWTI 531
>pdb|1FNU|A Chain A, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNU|B Chain B, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNU|C Chain C, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNU|D Chain D, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNV|A Chain A, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNV|B Chain B, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNV|C Chain C, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNV|D Chain D, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|A Chain A, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|B Chain B, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|C Chain C, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|D Chain D, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|E Chain E, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|F Chain F, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|G Chain G, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|H Chain H, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
Length = 221
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 543 ETIIKDLSSHKWTYKVGLYGLDDKKFYNAKAANSERGWSSKNVPLNRRMTWY 594
ET K +++ + YKV Y +D+K+ Y + E G+ K +P N+ W+
Sbjct: 134 ETNKKMVTAQELDYKVRKYTIDNKQLYTNGPSKYETGY-IKFIPKNKESFWF 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,024,161
Number of Sequences: 62578
Number of extensions: 1280798
Number of successful extensions: 2718
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2685
Number of HSP's gapped (non-prelim): 28
length of query: 795
length of database: 14,973,337
effective HSP length: 107
effective length of query: 688
effective length of database: 8,277,491
effective search space: 5694913808
effective search space used: 5694913808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)