Query 036344
Match_columns 354
No_of_seqs 202 out of 1393
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 20:14:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 4.7E-34 1.6E-38 234.3 9.2 105 11-117 1-105 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.5E-33 5.1E-38 233.1 8.2 102 14-117 1-102 (107)
3 3osg_A MYB21; transcription-DN 100.0 4.1E-33 1.4E-37 236.7 9.1 107 8-117 5-111 (126)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 3.2E-33 1.1E-37 237.2 8.3 109 7-117 20-128 (128)
5 3zqc_A MYB3; transcription-DNA 100.0 4.8E-33 1.6E-37 237.5 9.4 106 14-121 2-107 (131)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 4.4E-31 1.5E-35 231.3 8.4 109 7-117 51-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.7E-30 5.9E-35 227.6 7.0 114 12-127 4-118 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.8 1.9E-21 6.6E-26 164.8 7.1 86 41-127 1-87 (128)
9 2dim_A Cell division cycle 5-l 99.8 7.8E-22 2.7E-26 151.7 1.8 67 8-76 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 6.3E-19 2.2E-23 165.0 6.3 107 9-116 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 1.5E-18 5E-23 136.0 5.6 59 55-114 10-68 (73)
12 2din_A Cell division cycle 5-l 99.7 6.7E-17 2.3E-21 122.8 6.4 58 61-119 2-59 (66)
13 2juh_A Telomere binding protei 99.7 2.3E-17 7.8E-22 140.6 2.7 84 8-92 11-103 (121)
14 2cu7_A KIAA1915 protein; nucle 99.7 1.6E-16 5.4E-21 122.9 6.9 58 62-119 3-60 (72)
15 2d9a_A B-MYB, MYB-related prot 99.6 3.7E-17 1.3E-21 122.0 2.5 57 9-67 3-59 (60)
16 2d9a_A B-MYB, MYB-related prot 99.6 2E-16 6.9E-21 117.9 6.6 56 63-118 3-59 (60)
17 1gvd_A MYB proto-oncogene prot 99.6 4E-17 1.4E-21 118.5 2.4 52 12-65 1-52 (52)
18 2roh_A RTBP1, telomere binding 99.6 1.2E-16 4.2E-21 136.3 4.0 80 9-89 26-114 (122)
19 1guu_A C-MYB, MYB proto-oncoge 99.6 7.4E-17 2.5E-21 116.9 1.4 52 12-65 1-52 (52)
20 1guu_A C-MYB, MYB proto-oncoge 99.6 1E-15 3.4E-20 110.9 6.5 50 66-115 1-51 (52)
21 1ity_A TRF1; helix-turn-helix, 99.6 1.5E-16 5.2E-21 121.9 2.2 64 8-72 4-68 (69)
22 1gvd_A MYB proto-oncogene prot 99.6 1.9E-15 6.7E-20 109.6 6.3 50 66-115 1-51 (52)
23 2dim_A Cell division cycle 5-l 99.6 1.9E-15 6.4E-20 116.0 6.3 61 63-123 4-65 (70)
24 1ity_A TRF1; helix-turn-helix, 99.6 3.9E-15 1.3E-19 114.1 7.5 59 61-119 3-64 (69)
25 1w0t_A Telomeric repeat bindin 99.6 5.3E-15 1.8E-19 107.9 6.8 49 67-115 1-52 (53)
26 1x41_A Transcriptional adaptor 99.6 5.2E-15 1.8E-19 110.8 6.4 54 63-116 3-57 (60)
27 3sjm_A Telomeric repeat-bindin 99.5 1.2E-15 4E-20 116.4 1.3 56 11-67 8-64 (64)
28 2din_A Cell division cycle 5-l 99.5 5.4E-16 1.8E-20 117.8 -1.0 60 7-70 2-61 (66)
29 1x41_A Transcriptional adaptor 99.5 2E-15 6.7E-20 113.1 1.8 55 9-65 3-57 (60)
30 2yum_A ZZZ3 protein, zinc fing 99.5 1.1E-14 3.9E-19 112.9 5.8 56 63-118 3-64 (75)
31 3sjm_A Telomeric repeat-bindin 99.5 2.8E-14 9.4E-19 108.7 7.0 52 66-117 9-63 (64)
32 2yum_A ZZZ3 protein, zinc fing 99.5 2.4E-15 8.1E-20 116.8 -0.1 63 8-71 2-68 (75)
33 2ltp_A Nuclear receptor corepr 99.2 2.6E-15 8.9E-20 121.0 0.0 57 61-117 9-65 (89)
34 2elk_A SPCC24B10.08C protein; 99.5 5.5E-14 1.9E-18 104.7 6.7 51 63-113 4-56 (58)
35 1w0t_A Telomeric repeat bindin 99.5 8.4E-15 2.9E-19 106.8 1.2 50 13-63 1-51 (53)
36 2elk_A SPCC24B10.08C protein; 99.5 1.3E-14 4.5E-19 108.1 1.8 51 11-62 6-56 (58)
37 2cu7_A KIAA1915 protein; nucle 99.4 9.3E-15 3.2E-19 113.0 0.5 59 7-68 2-60 (72)
38 3osg_A MYB21; transcription-DN 99.4 4.9E-13 1.7E-17 113.2 7.3 65 63-127 6-70 (126)
39 1gv2_A C-MYB, MYB proto-oncoge 99.4 4.5E-13 1.5E-17 109.4 6.7 62 65-126 1-63 (105)
40 2cqr_A RSGI RUH-043, DNAJ homo 99.4 6E-13 2.1E-17 104.1 6.0 52 64-115 14-69 (73)
41 2aje_A Telomere repeat-binding 99.3 3.1E-13 1.1E-17 112.6 3.2 81 7-88 6-95 (105)
42 3zqc_A MYB3; transcription-DNA 99.3 2.4E-13 8.2E-18 115.6 2.3 84 7-97 47-130 (131)
43 2llk_A Cyclin-D-binding MYB-li 99.3 2.5E-13 8.6E-18 106.3 2.1 57 7-68 16-72 (73)
44 2ckx_A NGTRF1, telomere bindin 99.3 5.4E-13 1.9E-17 106.7 3.5 69 15-85 1-79 (83)
45 1x58_A Hypothetical protein 49 99.3 2.8E-12 9.4E-17 97.6 6.4 51 66-116 6-59 (62)
46 2yus_A SWI/SNF-related matrix- 99.3 1.6E-12 5.5E-17 102.9 5.0 48 65-112 15-62 (79)
47 2k9n_A MYB24; R2R3 domain, DNA 99.3 2.9E-12 1E-16 105.4 6.5 59 68-126 1-60 (107)
48 2ckx_A NGTRF1, telomere bindin 99.3 4.1E-12 1.4E-16 101.6 7.0 50 69-118 1-55 (83)
49 2juh_A Telomere binding protei 99.3 5.9E-12 2E-16 107.3 6.6 55 62-116 11-70 (121)
50 2aje_A Telomere repeat-binding 99.3 8.5E-12 2.9E-16 103.9 7.1 54 64-117 9-67 (105)
51 1ign_A Protein (RAP1); RAP1,ye 99.2 3.8E-12 1.3E-16 119.3 5.1 55 64-118 4-64 (246)
52 2ltp_A Nuclear receptor corepr 98.9 6.7E-13 2.3E-17 106.9 0.0 55 7-64 9-63 (89)
53 2yus_A SWI/SNF-related matrix- 99.2 1.8E-12 6.1E-17 102.6 2.3 52 7-61 11-62 (79)
54 2cjj_A Radialis; plant develop 99.2 3.1E-11 1.1E-15 98.4 6.6 49 67-115 7-59 (93)
55 2cqr_A RSGI RUH-043, DNAJ homo 99.2 4.4E-12 1.5E-16 99.2 1.3 56 7-63 11-68 (73)
56 2roh_A RTBP1, telomere binding 99.2 3.7E-11 1.3E-15 102.5 7.0 55 63-117 26-85 (122)
57 3hm5_A DNA methyltransferase 1 99.0 7.3E-10 2.5E-14 90.5 6.4 66 51-120 17-87 (93)
58 2eqr_A N-COR1, N-COR, nuclear 98.9 1.1E-09 3.8E-14 82.2 6.2 48 67-114 11-58 (61)
59 2cjj_A Radialis; plant develop 98.8 4.7E-10 1.6E-14 91.5 -0.1 49 13-62 7-57 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.8 8.3E-09 2.9E-13 80.3 6.2 50 65-115 5-58 (72)
61 2iw5_B Protein corest, REST co 98.7 2E-08 6.9E-13 93.6 6.9 50 67-116 132-181 (235)
62 2eqr_A N-COR1, N-COR, nuclear 98.6 1.3E-08 4.3E-13 76.4 1.8 52 7-61 5-56 (61)
63 1x58_A Hypothetical protein 49 98.5 2.3E-08 7.7E-13 76.1 1.3 49 12-63 6-57 (62)
64 2xag_B REST corepressor 1; ami 98.4 1.8E-07 6.3E-12 95.3 6.1 47 69-115 381-427 (482)
65 1wgx_A KIAA1903 protein; MYB D 98.4 4E-07 1.4E-11 71.3 6.3 49 68-116 8-60 (73)
66 1fex_A TRF2-interacting telome 98.3 6.6E-07 2.2E-11 67.0 5.3 47 68-114 2-58 (59)
67 2cqq_A RSGI RUH-037, DNAJ homo 98.3 8.7E-08 3E-12 74.6 -0.1 53 10-64 4-58 (72)
68 1fex_A TRF2-interacting telome 98.2 2E-07 6.9E-12 69.9 0.4 48 14-63 2-58 (59)
69 2iw5_B Protein corest, REST co 98.0 1.1E-06 3.9E-11 81.9 1.8 51 10-63 129-179 (235)
70 2yqk_A Arginine-glutamic acid 98.0 1.2E-05 4.3E-10 60.5 6.9 48 64-111 5-53 (63)
71 1ug2_A 2610100B20RIK gene prod 98.0 7.2E-06 2.5E-10 66.7 5.7 46 70-115 35-83 (95)
72 1wgx_A KIAA1903 protein; MYB D 97.9 1.5E-06 5.2E-11 68.0 0.7 49 14-63 8-58 (73)
73 2lr8_A CAsp8-associated protei 97.1 2.2E-06 7.4E-11 66.3 0.0 44 70-114 16-62 (70)
74 4iej_A DNA methyltransferase 1 97.8 4.7E-05 1.6E-09 62.1 7.0 60 56-119 22-86 (93)
75 4eef_G F-HB80.4, designed hema 97.7 5.1E-06 1.8E-10 65.1 0.4 43 68-110 20-66 (74)
76 1ofc_X ISWI protein; nuclear p 97.7 6.2E-05 2.1E-09 72.9 6.9 101 15-117 111-277 (304)
77 2crg_A Metastasis associated p 97.6 0.00014 4.7E-09 56.0 6.2 43 68-110 8-51 (70)
78 4a69_C Nuclear receptor corepr 97.5 0.00013 4.6E-09 59.1 6.2 44 68-111 43-86 (94)
79 4eef_G F-HB80.4, designed hema 97.5 1.4E-05 4.8E-10 62.7 0.0 45 14-59 20-66 (74)
80 2yqk_A Arginine-glutamic acid 97.3 7.7E-05 2.6E-09 56.2 2.2 50 8-60 3-53 (63)
81 2ebi_A DNA binding protein GT- 97.1 0.00035 1.2E-08 54.9 4.0 49 67-115 3-65 (86)
82 2xag_B REST corepressor 1; ami 97.0 0.00018 6.1E-09 73.5 1.7 49 10-61 376-424 (482)
83 3hm5_A DNA methyltransferase 1 97.0 0.00014 4.9E-09 59.2 0.7 48 13-62 29-80 (93)
84 4a69_C Nuclear receptor corepr 96.4 0.00083 2.8E-08 54.4 1.0 44 14-60 43-86 (94)
85 2ebi_A DNA binding protein GT- 96.3 0.00024 8.2E-09 55.9 -2.3 50 13-62 3-63 (86)
86 2crg_A Metastasis associated p 96.3 0.001 3.4E-08 51.1 1.1 45 13-60 7-52 (70)
87 4b4c_A Chromodomain-helicase-D 96.2 0.015 5.1E-07 52.0 8.5 47 70-116 136-197 (211)
88 1ug2_A 2610100B20RIK gene prod 96.2 0.0012 3.9E-08 53.8 0.9 48 13-61 32-80 (95)
89 2lr8_A CAsp8-associated protei 95.0 0.001 3.5E-08 51.5 0.0 48 14-63 14-62 (70)
90 2y9y_A Imitation switch protei 95.8 0.015 5.2E-07 57.7 7.2 102 15-117 124-293 (374)
91 1irz_A ARR10-B; helix-turn-hel 93.3 0.24 8.3E-06 37.6 6.6 47 66-112 5-56 (64)
92 4iej_A DNA methyltransferase 1 93.2 0.022 7.5E-07 46.4 0.8 49 12-62 28-80 (93)
93 4b4c_A Chromodomain-helicase-D 92.2 0.19 6.4E-06 44.8 5.6 50 66-115 5-59 (211)
94 1ofc_X ISWI protein; nuclear p 91.0 0.35 1.2E-05 46.8 6.4 48 68-115 110-158 (304)
95 2xb0_X Chromo domain-containin 76.8 2 6.9E-05 40.7 4.2 28 15-43 169-196 (270)
96 2xb0_X Chromo domain-containin 75.7 5.9 0.0002 37.5 7.0 48 68-115 3-55 (270)
97 1irz_A ARR10-B; helix-turn-hel 71.7 1.5 5.3E-05 33.2 1.6 48 11-58 4-53 (64)
98 2o8x_A Probable RNA polymerase 64.4 11 0.00036 26.6 4.8 41 74-115 18-58 (70)
99 1u78_A TC3 transposase, transp 60.8 34 0.0012 26.9 7.8 87 16-109 6-100 (141)
100 1ku3_A Sigma factor SIGA; heli 60.2 14 0.00047 26.8 4.9 42 74-116 13-58 (73)
101 2p7v_B Sigma-70, RNA polymeras 55.7 14 0.00048 26.4 4.2 42 74-116 8-53 (68)
102 3hug_A RNA polymerase sigma fa 49.4 24 0.00081 26.7 4.8 41 74-115 40-80 (92)
103 2li6_A SWI/SNF chromatin-remod 45.5 19 0.00064 29.4 3.8 38 78-115 53-98 (116)
104 2li6_A SWI/SNF chromatin-remod 45.4 3.9 0.00013 33.6 -0.4 40 24-64 53-98 (116)
105 2y9y_A Imitation switch protei 43.6 39 0.0013 33.5 6.4 48 68-115 123-172 (374)
106 2lm1_A Lysine-specific demethy 42.6 46 0.0016 26.4 5.7 38 78-115 48-97 (107)
107 1or7_A Sigma-24, RNA polymeras 40.8 45 0.0015 27.5 5.6 30 85-115 154-183 (194)
108 3i4p_A Transcriptional regulat 40.7 26 0.00088 29.4 4.1 45 74-119 3-48 (162)
109 2jrz_A Histone demethylase jar 39.8 45 0.0016 27.1 5.3 38 78-115 44-93 (117)
110 1x3u_A Transcriptional regulat 39.6 58 0.002 23.3 5.4 43 71-116 17-59 (79)
111 2rq5_A Protein jumonji; develo 38.2 7.5 0.00026 32.5 0.3 46 36-84 64-113 (121)
112 1tty_A Sigma-A, RNA polymerase 37.4 49 0.0017 24.8 4.9 42 74-116 21-66 (87)
113 3cz6_A DNA-binding protein RAP 36.4 21 0.00073 31.7 2.9 23 12-34 112-142 (168)
114 1kkx_A Transcription regulator 35.7 28 0.00095 28.9 3.4 38 78-115 52-97 (123)
115 2eqy_A RBP2 like, jumonji, at 35.4 55 0.0019 26.9 5.2 38 78-115 46-95 (122)
116 2cxy_A BAF250B subunit, HBAF25 35.3 60 0.0021 26.7 5.4 38 78-115 55-104 (125)
117 3c57_A Two component transcrip 34.0 63 0.0022 24.7 5.1 44 70-116 27-70 (95)
118 2jrz_A Histone demethylase jar 33.9 6.4 0.00022 32.4 -0.8 40 24-63 44-92 (117)
119 1ig6_A MRF-2, modulator recogn 33.8 6.7 0.00023 31.5 -0.7 42 23-64 36-87 (107)
120 2k27_A Paired box protein PAX- 33.6 1.8E+02 0.0062 23.6 8.3 66 15-86 24-99 (159)
121 1je8_A Nitrate/nitrite respons 33.3 65 0.0022 23.9 4.9 44 70-116 21-64 (82)
122 2jpc_A SSRB; DNA binding prote 33.1 76 0.0026 21.5 5.0 39 76-116 3-41 (61)
123 3ulq_B Transcriptional regulat 33.0 86 0.0029 24.0 5.7 47 67-116 26-72 (90)
124 1fse_A GERE; helix-turn-helix 32.9 65 0.0022 22.5 4.7 45 69-116 10-54 (74)
125 1xsv_A Hypothetical UPF0122 pr 32.6 77 0.0026 25.2 5.6 41 74-115 28-68 (113)
126 2dbb_A Putative HTH-type trans 31.1 78 0.0027 25.7 5.5 45 74-119 9-54 (151)
127 1rp3_A RNA polymerase sigma fa 31.0 74 0.0025 26.9 5.5 38 77-115 193-230 (239)
128 3mzy_A RNA polymerase sigma-H 30.6 64 0.0022 25.5 4.8 30 85-115 122-151 (164)
129 1c20_A DEAD ringer protein; DN 29.2 89 0.003 25.7 5.5 38 78-115 56-106 (128)
130 1c20_A DEAD ringer protein; DN 28.9 6.3 0.00021 32.8 -1.7 41 24-64 56-106 (128)
131 2yqf_A Ankyrin-1; death domain 28.9 87 0.003 25.0 5.2 35 72-107 14-48 (111)
132 2eqy_A RBP2 like, jumonji, at 28.2 10 0.00035 31.4 -0.5 40 24-63 46-94 (122)
133 1k78_A Paired box protein PAX5 28.1 1.1E+02 0.0038 24.5 5.9 100 12-116 28-146 (149)
134 2q1z_A RPOE, ECF SIGE; ECF sig 27.8 29 0.00099 28.5 2.3 30 85-115 149-178 (184)
135 2e1c_A Putative HTH-type trans 27.3 75 0.0026 27.0 4.9 46 73-119 26-72 (171)
136 2kk0_A AT-rich interactive dom 27.3 88 0.003 26.4 5.2 38 78-115 68-118 (145)
137 2jxj_A Histone demethylase jar 26.0 43 0.0015 26.0 2.8 37 78-114 40-88 (96)
138 2rq5_A Protein jumonji; develo 25.8 81 0.0028 26.1 4.6 77 12-115 5-96 (121)
139 2cyy_A Putative HTH-type trans 24.8 99 0.0034 25.2 5.0 45 74-119 7-52 (151)
140 2rnj_A Response regulator prot 24.0 74 0.0025 23.8 3.8 44 70-116 29-72 (91)
141 1s7o_A Hypothetical UPF0122 pr 22.9 1.3E+02 0.0045 24.0 5.3 43 71-115 23-65 (113)
142 2of5_H Leucine-rich repeat and 22.3 92 0.0031 25.2 4.2 31 76-107 13-43 (118)
143 2kk0_A AT-rich interactive dom 22.1 19 0.00064 30.7 -0.0 41 24-64 68-118 (145)
144 3cz6_A DNA-binding protein RAP 21.8 69 0.0024 28.4 3.5 17 64-80 110-126 (168)
145 2o71_A Death domain-containing 20.5 1.2E+02 0.004 24.7 4.6 36 68-107 19-54 (115)
146 1p4w_A RCSB; solution structur 20.4 2E+02 0.0069 22.4 5.8 46 68-116 32-77 (99)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=4.7e-34 Score=234.26 Aligned_cols=105 Identities=42% Similarity=0.852 Sum_probs=99.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCCH
Q 036344 11 NVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRW 90 (354)
Q Consensus 11 ~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lkkg~WTeEED~~Llelv~~~G~kW 90 (354)
.+++|+||+|||++|+++|.+||. .+|..||+.|+ +|+++||++||.++|+|.+++++||+|||.+|++++.+||++|
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W 78 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW 78 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCH
Confidence 478999999999999999999997 68999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 036344 91 SIIAAQLPGRTDNDIKNYWNTRLKKKL 117 (354)
Q Consensus 91 s~IAk~LpGRT~nqcKnRW~slLrkk~ 117 (354)
+.||++|||||+++||+||+.++++++
T Consensus 79 ~~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 79 AEIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999998763
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1.5e-33 Score=233.08 Aligned_cols=102 Identities=31% Similarity=0.647 Sum_probs=98.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCCHHHH
Q 036344 14 KGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSII 93 (354)
Q Consensus 14 KG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lkkg~WTeEED~~Llelv~~~G~kWs~I 93 (354)
||+||+|||++|+++|.+||. .+|..||+.|+ +|+++|||+||.++|+|.+++++||+|||.+|++++.+||++|+.|
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~I 78 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGA-KDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKI 78 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCS-SCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC-CCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHH
Confidence 689999999999999999997 69999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHhhhhh
Q 036344 94 AAQLPGRTDNDIKNYWNTRLKKKL 117 (354)
Q Consensus 94 Ak~LpGRT~nqcKnRW~slLrkk~ 117 (354)
|++|||||+++||+||+.++++..
T Consensus 79 a~~l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 79 SKFLKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHhhHH
Confidence 999999999999999999988754
No 3
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.98 E-value=4.1e-33 Score=236.73 Aligned_cols=107 Identities=39% Similarity=0.700 Sum_probs=102.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCCCCCCCCChHHHHHHHHHHHHhC
Q 036344 8 DKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIG 87 (354)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lkkg~WTeEED~~Llelv~~~G 87 (354)
.++..+||+||+|||++|+++|.+||. +|..||+.|+ +|+++|||+||.++|+|.+++++||+|||++|++++.+||
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS--DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT--CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999997 8999999998 9999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 036344 88 SRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117 (354)
Q Consensus 88 ~kWs~IAk~LpGRT~nqcKnRW~slLrkk~ 117 (354)
++|+.||++|||||+++||+||+.++++.-
T Consensus 82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 82 RQWAIIAKFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999887743
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.98 E-value=3.2e-33 Score=237.20 Aligned_cols=109 Identities=39% Similarity=0.812 Sum_probs=102.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCCCCCCCCChHHHHHHHHHHHHh
Q 036344 7 CDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISI 86 (354)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lkkg~WTeEED~~Llelv~~~ 86 (354)
..+|++++|+||+|||++|+++|.+||. .+|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|++++.+|
T Consensus 20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~ 97 (128)
T 1h8a_C 20 VLNPELNKGPWTKEEDQRVIEHVQKYGP-KRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 97 (128)
T ss_dssp --CTTCCCSCCCHHHHHHHHHHHHHTCS-CCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999997 68999999998 999999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 036344 87 GSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117 (354)
Q Consensus 87 G~kWs~IAk~LpGRT~nqcKnRW~slLrkk~ 117 (354)
|++|+.||++|||||+++||+||+.++++++
T Consensus 98 G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 98 GNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred CcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999988753
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=4.8e-33 Score=237.50 Aligned_cols=106 Identities=39% Similarity=0.820 Sum_probs=101.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCCHHHH
Q 036344 14 KGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSII 93 (354)
Q Consensus 14 KG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lkkg~WTeEED~~Llelv~~~G~kWs~I 93 (354)
||+||+|||++|+++|.+||. .+|..||+.|+ +|+++|||+||.++|+|.+++|+||+|||++|+++|.+||++|+.|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGP-QNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCS-CCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 799999999999999999997 69999999998 9999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHhhhhhhchh
Q 036344 94 AAQLPGRTDNDIKNYWNTRLKKKLLGKQ 121 (354)
Q Consensus 94 Ak~LpGRT~nqcKnRW~slLrkk~~~k~ 121 (354)
|++|||||+++||+||++++++++....
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999876543
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=4.4e-31 Score=231.29 Aligned_cols=109 Identities=40% Similarity=0.812 Sum_probs=103.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCCCCCCCCChHHHHHHHHHHHHh
Q 036344 7 CDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISI 86 (354)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lkkg~WTeEED~~Llelv~~~ 86 (354)
..+|.+++|+||+|||++|+++|.+||. .+|..||+.|+ +|+++||++||.++|+|.+++++||+|||.+|++++.+|
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~ 128 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 128 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCS-CCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCc-ccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHH
Confidence 3578999999999999999999999997 58999999998 999999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 036344 87 GSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117 (354)
Q Consensus 87 G~kWs~IAk~LpGRT~nqcKnRW~slLrkk~ 117 (354)
|++|+.||++|||||+++|||||+.++++++
T Consensus 129 g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 129 GNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999988753
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=1.7e-30 Score=227.56 Aligned_cols=114 Identities=32% Similarity=0.664 Sum_probs=69.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCCCCCCCCChHHHHHHHHHHHHhCC-CH
Q 036344 12 VKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGS-RW 90 (354)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lkkg~WTeEED~~Llelv~~~G~-kW 90 (354)
++|++||+|||++|+++|.+||. .+|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 78999999999999999999997 69999999998 99999999999999999999999999999999999999996 79
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHhhhhhhchhhhHHHH
Q 036344 91 SIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQA 127 (354)
Q Consensus 91 s~IAk~LpGRT~nqcKnRW~slLrkk~~~k~~k~q~~ 127 (354)
..||++|||||+.+|++||+++|.+.+....+...+.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd 118 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED 118 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHH
Confidence 9999999999999999999999998887777665543
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.84 E-value=1.9e-21 Score=164.75 Aligned_cols=86 Identities=27% Similarity=0.558 Sum_probs=60.1
Q ss_pred ecccccccccCccccccccccccCCCCCCCCChHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhc
Q 036344 41 LPHKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (354)
Q Consensus 41 IAk~lg~~Rt~kQCReRW~n~L~P~lkkg~WTeEED~~Llelv~~~G~-kWs~IAk~LpGRT~nqcKnRW~slLrkk~~~ 119 (354)
||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|..||+.|+|||+.+|++||+.+|.+.+..
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788888 99999999999999999999999999999999999999996 6999999999999999999999999998877
Q ss_pred hhhhHHHH
Q 036344 120 KQRKEQQA 127 (354)
Q Consensus 120 k~~k~q~~ 127 (354)
..+..++.
T Consensus 80 ~~WT~eEd 87 (128)
T 1h8a_C 80 TSWTEEED 87 (128)
T ss_dssp SCCCHHHH
T ss_pred ccCCHHHH
Confidence 77766543
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=7.8e-22 Score=151.74 Aligned_cols=67 Identities=28% Similarity=0.614 Sum_probs=64.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCCCCCCCCChHHH
Q 036344 8 DKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEED 76 (354)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lkkg~WTeEED 76 (354)
..|.+++|+||+|||++|+++|.+||. .+|..||+.|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGK-NQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCS-SCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 467899999999999999999999996 59999999999 99999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.75 E-value=6.3e-19 Score=164.97 Aligned_cols=107 Identities=20% Similarity=0.287 Sum_probs=92.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCC----CCcceecccccccccCccccccccccccCCCC-----------------
Q 036344 9 KANVKKGPWSPEEDAKLKAYIEQHGTG----GNWIALPHKIGLKRCGKSCRLRWLNYLRPNIK----------------- 67 (354)
Q Consensus 9 Kp~lkKG~WT~EEDe~L~~lV~k~G~~----~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lk----------------- 67 (354)
.+.++|++||+|||++|+++|.++|.. ..|.+||+.|+ |||+.|||.||.++|.+.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 456889999999999999999999872 12999999999 99999999999999999987
Q ss_pred ------------CCCCChHHHHHHHHHHHH-h------------------------------------------------
Q 036344 68 ------------HGGFSEEEDNIICSLYIS-I------------------------------------------------ 86 (354)
Q Consensus 68 ------------kg~WTeEED~~Llelv~~-~------------------------------------------------ 86 (354)
+..||.+||-.|+..+++ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 899999999999999987 2
Q ss_pred -----CC----CHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 036344 87 -----GS----RWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 87 -----G~----kWs~IAk~LpGRT~nqcKnRW~slLrkk 116 (354)
|. .|..||+.+|+||.+++|+||+.+++..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 21 6999999999999999999999988765
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-18 Score=136.04 Aligned_cols=59 Identities=24% Similarity=0.341 Sum_probs=47.9
Q ss_pred cccccccccCCCCCCCCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 036344 55 RLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (354)
Q Consensus 55 ReRW~n~L~P~lkkg~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLr 114 (354)
--||.++|+|++++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999 9999999999997543
No 12
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=6.7e-17 Score=122.83 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=55.2
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhc
Q 036344 61 YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (354)
Q Consensus 61 ~L~P~lkkg~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk~~~ 119 (354)
+|+|.+++++||.|||++|++++.+||++|..||+ ++|||+++||+||+.+|++.+..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcC
Confidence 79999999999999999999999999999999999 89999999999999999987643
No 13
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.65 E-value=2.3e-17 Score=140.62 Aligned_cols=84 Identities=15% Similarity=0.206 Sum_probs=77.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceeccccc---ccccCcccccccccccc-----CCCCCC-CCChHHHHH
Q 036344 8 DKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIG---LKRCGKSCRLRWLNYLR-----PNIKHG-GFSEEEDNI 78 (354)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg---~~Rt~kQCReRW~n~L~-----P~lkkg-~WTeEED~~ 78 (354)
.++..++++||+|||+.|+++|++||. ++|..|++.++ .+||+.+|++||+++|+ |.++++ +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~-G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGG-GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 456789999999999999999999998 79999999852 38999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCCHHH
Q 036344 79 ICSLYISIGSRWSI 92 (354)
Q Consensus 79 Llelv~~~G~kWs~ 92 (354)
|++++..+|++|++
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999976
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=1.6e-16 Score=122.93 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=54.9
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhc
Q 036344 62 LRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (354)
Q Consensus 62 L~P~lkkg~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk~~~ 119 (354)
++|.+++++||+|||++|++++.+||++|..||++|+|||+++||+||+.++++....
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999987644
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=3.7e-17 Score=121.96 Aligned_cols=57 Identities=30% Similarity=0.615 Sum_probs=53.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCCCC
Q 036344 9 KANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNIK 67 (354)
Q Consensus 9 Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lk 67 (354)
.|.+++++||+|||++|+++|.+||. .+|..||+.|+ +|+++|||+||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQ-QDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCT-TCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 57899999999999999999999996 59999999998 99999999999999999875
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=2e-16 Score=117.92 Aligned_cols=56 Identities=23% Similarity=0.414 Sum_probs=52.6
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhhhh
Q 036344 63 RPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL 118 (354)
Q Consensus 63 ~P~lkkg~WTeEED~~Llelv~~~G-~kWs~IAk~LpGRT~nqcKnRW~slLrkk~~ 118 (354)
+|.+++++||+|||++|+++|.+|| ++|+.||++|+|||+.+||+||+++|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999 5999999999999999999999999988653
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.64 E-value=4e-17 Score=118.49 Aligned_cols=52 Identities=38% Similarity=0.858 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCC
Q 036344 12 VKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPN 65 (354)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~ 65 (354)
++||+||+|||++|+++|.+||. .+|..||+.|+ +|+++|||+||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc-ChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 57999999999999999999997 68999999998 999999999999999985
No 18
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.62 E-value=1.2e-16 Score=136.32 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=73.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceeccccc---ccccCccccccccccc-----cCCCCCCCCChHH-HHHH
Q 036344 9 KANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIG---LKRCGKSCRLRWLNYL-----RPNIKHGGFSEEE-DNII 79 (354)
Q Consensus 9 Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg---~~Rt~kQCReRW~n~L-----~P~lkkg~WTeEE-D~~L 79 (354)
+...++++||+|||+.|+++|++||. ++|..|++.+. .+||+.+|++||.|++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGT-GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSS-SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 44578999999999999999999998 79999998741 3899999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCC
Q 036344 80 CSLYISIGSR 89 (354)
Q Consensus 80 lelv~~~G~k 89 (354)
++++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999984
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=7.4e-17 Score=116.95 Aligned_cols=52 Identities=37% Similarity=0.774 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCC
Q 036344 12 VKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPN 65 (354)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~ 65 (354)
+++|+||+|||++|+++|.+||. .+|..||+.|+ +|+++||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCS-SCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 57999999999999999999997 69999999998 999999999999999985
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.60 E-value=1e-15 Score=110.95 Aligned_cols=50 Identities=30% Similarity=0.556 Sum_probs=46.5
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 66 IKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 66 lkkg~WTeEED~~Llelv~~~G~-kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
+++++||+|||++|+++|.+||. +|+.||++|+|||+.+||+||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998 999999999999999999999999875
No 21
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.60 E-value=1.5e-16 Score=121.94 Aligned_cols=64 Identities=20% Similarity=0.375 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccc-cccCccccccccccccCCCCCCCCC
Q 036344 8 DKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGL-KRCGKSCRLRWLNYLRPNIKHGGFS 72 (354)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~-~Rt~kQCReRW~n~L~P~lkkg~WT 72 (354)
-++..++++||+|||++|+++|.+||. .+|..||+.|+. +|+++|||+||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCS-SCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCC-CcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 356789999999999999999999997 699999999976 8999999999999999999988764
No 22
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.58 E-value=1.9e-15 Score=109.57 Aligned_cols=50 Identities=32% Similarity=0.672 Sum_probs=47.2
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 66 IKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 66 lkkg~WTeEED~~Llelv~~~G~-kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
+++++||+|||++|+++|.+||. +|+.||+.|+|||+.+||+||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999998865
No 23
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=116.03 Aligned_cols=61 Identities=23% Similarity=0.386 Sum_probs=56.0
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhchhhh
Q 036344 63 RPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRK 123 (354)
Q Consensus 63 ~P~lkkg~WTeEED~~Llelv~~~G-~kWs~IAk~LpGRT~nqcKnRW~slLrkk~~~k~~k 123 (354)
.|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.+||+||+++|++.+....+.
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt 65 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCC
Confidence 4778999999999999999999999 799999999999999999999999999987665543
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.57 E-value=3.9e-15 Score=114.09 Aligned_cols=59 Identities=29% Similarity=0.311 Sum_probs=54.3
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhhhhc
Q 036344 61 YLRPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLP--GRTDNDIKNYWNTRLKKKLLG 119 (354)
Q Consensus 61 ~L~P~lkkg~WTeEED~~Llelv~~~G-~kWs~IAk~Lp--GRT~nqcKnRW~slLrkk~~~ 119 (354)
..+|..++++||+|||++|+++|.+|| ++|+.||++|+ |||+.+||+||+++|++.+..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 456778899999999999999999999 69999999999 999999999999999997754
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.56 E-value=5.3e-15 Score=107.93 Aligned_cols=49 Identities=31% Similarity=0.356 Sum_probs=46.5
Q ss_pred CCCCCChHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhh
Q 036344 67 KHGGFSEEEDNIICSLYISIG-SRWSIIAAQLP--GRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 67 kkg~WTeEED~~Llelv~~~G-~kWs~IAk~Lp--GRT~nqcKnRW~slLrk 115 (354)
++++||+|||++|+++|.+|| ++|+.||+.|+ |||+.+||+||+++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999999875
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=5.2e-15 Score=110.77 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=50.2
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 036344 63 RPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 63 ~P~lkkg~WTeEED~~Llelv~~~G-~kWs~IAk~LpGRT~nqcKnRW~slLrkk 116 (354)
.+.+.+++||+|||++|+++|.+|| ++|..||++|+|||+.+||+||+++|...
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 4678999999999999999999999 79999999999999999999999987653
No 27
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.53 E-value=1.2e-15 Score=116.35 Aligned_cols=56 Identities=29% Similarity=0.509 Sum_probs=49.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCcceeccccc-ccccCccccccccccccCCCC
Q 036344 11 NVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIG-LKRCGKSCRLRWLNYLRPNIK 67 (354)
Q Consensus 11 ~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg-~~Rt~kQCReRW~n~L~P~lk 67 (354)
..+|++||+|||++|+++|.+||. .+|..||+.++ .+|+++|||+||.++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCC-CchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 468999999999999999999997 69999999864 379999999999999998764
No 28
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5.4e-16 Score=117.80 Aligned_cols=60 Identities=23% Similarity=0.329 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCCCCCCC
Q 036344 7 CDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNIKHGG 70 (354)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lkkg~ 70 (354)
..+|.+++++||+|||++|+++|..+|. +|..||+ ++ +|+++|||+||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~--~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT--QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT--CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC--CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 3578999999999999999999999997 8999999 77 79999999999999999877653
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=2e-15 Score=113.07 Aligned_cols=55 Identities=16% Similarity=0.497 Sum_probs=51.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCC
Q 036344 9 KANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPN 65 (354)
Q Consensus 9 Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~ 65 (354)
.+.+++++||+|||++|+++|.+||. .+|..||+.|+ +|+++|||+||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCT-TCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCc-CcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 36799999999999999999999996 59999999999 899999999999999865
No 30
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=112.93 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=52.3
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhC------CCHHHHHhhCCCCCHHHHHHHHHHHhhhhhh
Q 036344 63 RPNIKHGGFSEEEDNIICSLYISIG------SRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL 118 (354)
Q Consensus 63 ~P~lkkg~WTeEED~~Llelv~~~G------~kWs~IAk~LpGRT~nqcKnRW~slLrkk~~ 118 (354)
+|.+++++||+|||++|++++.+|| ++|..||++|+|||+.|||+||+++|++.++
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999 7999999999999999999999998887653
No 31
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.50 E-value=2.8e-14 Score=108.74 Aligned_cols=52 Identities=25% Similarity=0.413 Sum_probs=47.3
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-CHHHHHhhCC--CCCHHHHHHHHHHHhhhhh
Q 036344 66 IKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLP--GRTDNDIKNYWNTRLKKKL 117 (354)
Q Consensus 66 lkkg~WTeEED~~Llelv~~~G~-kWs~IAk~Lp--GRT~nqcKnRW~slLrkk~ 117 (354)
.++++||+|||++|+++|.+||. +|+.||+.++ |||+.|||+||+++++..+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 47899999999999999999995 8999999966 9999999999999998754
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.4e-15 Score=116.77 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCC----CCcceecccccccccCccccccccccccCCCCCCCC
Q 036344 8 DKANVKKGPWSPEEDAKLKAYIEQHGTG----GNWIALPHKIGLKRCGKSCRLRWLNYLRPNIKHGGF 71 (354)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~k~G~~----~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lkkg~W 71 (354)
.+|.+++++||+|||++|+++|.+||.+ .+|..||+.|+ +|+++|||+||.+||.+.++.|..
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence 4789999999999999999999999941 38999999999 999999999999999998877643
No 33
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.22 E-value=2.6e-15 Score=120.99 Aligned_cols=57 Identities=26% Similarity=0.342 Sum_probs=53.9
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 036344 61 YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117 (354)
Q Consensus 61 ~L~P~lkkg~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk~ 117 (354)
.++|.+++++||+|||++|++++.+||++|+.||++|+|||+++||+||++++++.-
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 567899999999999999999999999999999999999999999999999988753
No 34
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.48 E-value=5.5e-14 Score=104.69 Aligned_cols=51 Identities=14% Similarity=0.297 Sum_probs=46.9
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhC-CCHHHHHhhCC-CCCHHHHHHHHHHHh
Q 036344 63 RPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLP-GRTDNDIKNYWNTRL 113 (354)
Q Consensus 63 ~P~lkkg~WTeEED~~Llelv~~~G-~kWs~IAk~Lp-GRT~nqcKnRW~slL 113 (354)
+..+.+++||+|||++|+++|.+|| .+|..||++|+ |||+.|||+||++++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3457789999999999999999999 89999999999 999999999998764
No 35
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.46 E-value=8.4e-15 Score=106.84 Aligned_cols=50 Identities=26% Similarity=0.512 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCcceecccccc-cccCcccccccccccc
Q 036344 13 KKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGL-KRCGKSCRLRWLNYLR 63 (354)
Q Consensus 13 kKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~-~Rt~kQCReRW~n~L~ 63 (354)
++|+||+|||++|+++|.+||. .+|..||+.++. +|+++||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999997 599999999875 5999999999999875
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.45 E-value=1.3e-14 Score=108.06 Aligned_cols=51 Identities=25% Similarity=0.488 Sum_probs=47.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccc
Q 036344 11 NVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYL 62 (354)
Q Consensus 11 ~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L 62 (354)
.+.+++||+|||++|+++|.+||. .+|..||+.|+.+|+++|||+||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~-~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGL-GNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTT-TCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 466899999999999999999996 599999999987899999999999875
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.44 E-value=9.3e-15 Score=112.95 Aligned_cols=59 Identities=17% Similarity=0.321 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCCCCC
Q 036344 7 CDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNIKH 68 (354)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lkk 68 (354)
+..|.+++++||+|||++|+++|.+||. +|..||+.|+ +|++.||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR--RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS--CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 4568899999999999999999999998 9999999999 999999999999999887665
No 38
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.39 E-value=4.9e-13 Score=113.16 Aligned_cols=65 Identities=23% Similarity=0.440 Sum_probs=58.7
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhchhhhHHHH
Q 036344 63 RPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQA 127 (354)
Q Consensus 63 ~P~lkkg~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk~~~k~~k~q~~ 127 (354)
.+..++++||+|||++|+++|.+||.+|..||+.|+|||..+|+.||+++|.+.+....+..++.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd 70 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEED 70 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHH
Confidence 35678999999999999999999999999999999999999999999999999887777766543
No 39
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.38 E-value=4.5e-13 Score=109.35 Aligned_cols=62 Identities=27% Similarity=0.579 Sum_probs=56.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhchhhhHHH
Q 036344 65 NIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQ 126 (354)
Q Consensus 65 ~lkkg~WTeEED~~Llelv~~~G~-kWs~IAk~LpGRT~nqcKnRW~slLrkk~~~k~~k~q~ 126 (354)
++++++||+|||++|+++|.+||. +|..||+.|+|||+.+|+.||..+|.+.+....+..++
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eE 63 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 63 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHH
Confidence 378999999999999999999997 79999999999999999999999999888777776554
No 40
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.36 E-value=6e-13 Score=104.11 Aligned_cols=52 Identities=10% Similarity=0.220 Sum_probs=48.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 64 PNIKHGGFSEEEDNIICSLYISIG----SRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 64 P~lkkg~WTeEED~~Llelv~~~G----~kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
+.+.+++||.+||.+|++++..|| ++|.+||++|||||.++||+||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 457889999999999999999999 6899999999999999999999988764
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.34 E-value=3.1e-13 Score=112.59 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=68.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceeccccc---ccccCccccccccccc-----cCCCCCCCCChHHHHH
Q 036344 7 CDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIG---LKRCGKSCRLRWLNYL-----RPNIKHGGFSEEEDNI 78 (354)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg---~~Rt~kQCReRW~n~L-----~P~lkkg~WTeEED~~ 78 (354)
..++..++++||+|||+.|+++|++||. ++|..|++.++ .+||+.+|++||.+++ +|.+++|.-++.|-..
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~ 84 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGT-GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLN 84 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCS-SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHH
Confidence 4567789999999999999999999998 79999999762 3899999999999999 6999999888877766
Q ss_pred -HHHHHHHhCC
Q 036344 79 -ICSLYISIGS 88 (354)
Q Consensus 79 -Llelv~~~G~ 88 (354)
+++++..+|+
T Consensus 85 rv~~~~~~~~~ 95 (105)
T 2aje_A 85 RVLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 8888876653
No 42
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.33 E-value=2.4e-13 Score=115.63 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCCCCCCCCChHHHHHHHHHHHHh
Q 036344 7 CDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISI 86 (354)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lkkg~WTeEED~~Llelv~~~ 86 (354)
...|.+++|+||+|||++|+++|.+||. +|..||+.|+ +|++.+|+.||.++|++.+..++|+.+- +......
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~--~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~k 119 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLGS--KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSK 119 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSCS--CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC-
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhh
Confidence 3578999999999999999999999997 8999999999 9999999999999999999999988763 1111223
Q ss_pred CCCHHHHHhhC
Q 036344 87 GSRWSIIAAQL 97 (354)
Q Consensus 87 G~kWs~IAk~L 97 (354)
+.+|+.|++.|
T Consensus 120 k~~~~~i~k~~ 130 (131)
T 3zqc_A 120 KRKAADVPKKL 130 (131)
T ss_dssp -----------
T ss_pred hhhhhhcchhc
Confidence 45788888765
No 43
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.33 E-value=2.5e-13 Score=106.30 Aligned_cols=57 Identities=23% Similarity=0.385 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccCCCCC
Q 036344 7 CDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNIKH 68 (354)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lkk 68 (354)
...|++++|+||+|||++|+++|.+||. .|..||+.| +|++.||++||.. |....+.
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~--kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHGN--DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHSS--CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHCC--CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 5679999999999999999999999998 699999999 7999999999974 5555444
No 44
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.32 E-value=5.4e-13 Score=106.73 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcceeccc----ccccccCccccccccccc-----cCCCCCC-CCChHHHHHHHHHHH
Q 036344 15 GPWSPEEDAKLKAYIEQHGTGGNWIALPHK----IGLKRCGKSCRLRWLNYL-----RPNIKHG-GFSEEEDNIICSLYI 84 (354)
Q Consensus 15 G~WT~EEDe~L~~lV~k~G~~~nW~~IAk~----lg~~Rt~kQCReRW~n~L-----~P~lkkg-~WTeEED~~Llelv~ 84 (354)
++||+|||+.|+++|++||. ++|..|++. ++ +||+.+|++||.|+| +|.+++| +...+...+++.++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~-g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCS-SCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC-CCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 47999999999999999998 799999985 66 899999999999988 6776666 778888889999886
Q ss_pred H
Q 036344 85 S 85 (354)
Q Consensus 85 ~ 85 (354)
.
T Consensus 79 ~ 79 (83)
T 2ckx_A 79 Y 79 (83)
T ss_dssp H
T ss_pred H
Confidence 4
No 45
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.31 E-value=2.8e-12 Score=97.64 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=46.8
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCCHHHHH---hhCCCCCHHHHHHHHHHHhhhh
Q 036344 66 IKHGGFSEEEDNIICSLYISIGSRWSIIA---AQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 66 lkkg~WTeEED~~Llelv~~~G~kWs~IA---k~LpGRT~nqcKnRW~slLrkk 116 (354)
.++.+||+|||+.|+++|++||.+|+.|+ .++++||+.++|+||+++.|+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 36789999999999999999999999999 5779999999999999988763
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=102.89 Aligned_cols=48 Identities=10% Similarity=0.172 Sum_probs=45.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 036344 65 NIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTR 112 (354)
Q Consensus 65 ~lkkg~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~sl 112 (354)
...+++||+|||++|++++.+||.+|..||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999866
No 47
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.29 E-value=2.9e-12 Score=105.40 Aligned_cols=59 Identities=22% Similarity=0.386 Sum_probs=53.9
Q ss_pred CCCCChHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhchhhhHHH
Q 036344 68 HGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQ 126 (354)
Q Consensus 68 kg~WTeEED~~Llelv~~~G~-kWs~IAk~LpGRT~nqcKnRW~slLrkk~~~k~~k~q~ 126 (354)
+++||+|||++|+++|.+||. +|..||..|+|||+.+|+.||.++|.+.+....+..++
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eE 60 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHH
Confidence 589999999999999999996 89999999999999999999999999988777776554
No 48
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.29 E-value=4.1e-12 Score=101.63 Aligned_cols=50 Identities=24% Similarity=0.404 Sum_probs=46.1
Q ss_pred CCCChHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhhhh
Q 036344 69 GGFSEEEDNIICSLYISIGS-RWSIIAAQ----LPGRTDNDIKNYWNTRLKKKLL 118 (354)
Q Consensus 69 g~WTeEED~~Llelv~~~G~-kWs~IAk~----LpGRT~nqcKnRW~slLrkk~~ 118 (354)
.+||+|||+.|+++|.+||. +|+.|++. |+|||+++||+||+++++....
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence 48999999999999999998 99999996 8999999999999999986543
No 49
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.26 E-value=5.9e-12 Score=107.29 Aligned_cols=55 Identities=24% Similarity=0.363 Sum_probs=50.6
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhh
Q 036344 62 LRPNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQ----LPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 62 L~P~lkkg~WTeEED~~Llelv~~~G~-kWs~IAk~----LpGRT~nqcKnRW~slLrkk 116 (354)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+++||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 556788999999999999999999998 99999998 49999999999999999853
No 50
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.25 E-value=8.5e-12 Score=103.92 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=49.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCC-CHHHHHhhC----CCCCHHHHHHHHHHHhhhhh
Q 036344 64 PNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQL----PGRTDNDIKNYWNTRLKKKL 117 (354)
Q Consensus 64 P~lkkg~WTeEED~~Llelv~~~G~-kWs~IAk~L----pGRT~nqcKnRW~slLrkk~ 117 (354)
+..++++||+|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++...
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 4578899999999999999999998 999999965 89999999999999998654
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.24 E-value=3.8e-12 Score=119.31 Aligned_cols=55 Identities=27% Similarity=0.474 Sum_probs=48.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCCC------HHHHHhhCCCCCHHHHHHHHHHHhhhhhh
Q 036344 64 PNIKHGGFSEEEDNIICSLYISIGSR------WSIIAAQLPGRTDNDIKNYWNTRLKKKLL 118 (354)
Q Consensus 64 P~lkkg~WTeEED~~Llelv~~~G~k------Ws~IAk~LpGRT~nqcKnRW~slLrkk~~ 118 (354)
+.+++++||+|||++|+++|.++|++ |.+||++|||||+++||+||+++|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 45788999999999999999999985 99999999999999999999999999764
No 52
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.89 E-value=6.7e-13 Score=106.87 Aligned_cols=55 Identities=25% Similarity=0.531 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccC
Q 036344 7 CDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRP 64 (354)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P 64 (354)
...|.+++|+||+|||++|+++|.+||. +|..||+.|+ +||+.||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR--NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 5678899999999999999999999998 8999999999 99999999999999863
No 53
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.24 E-value=1.8e-12 Score=102.62 Aligned_cols=52 Identities=21% Similarity=0.436 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCcccccccccc
Q 036344 7 CDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNY 61 (354)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~ 61 (354)
+.+....+++||+|||++|+++|++||. +|.+||+.|+ +|++.||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G~--~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYKD--DWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSSS--CHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 5677788999999999999999999994 9999999999 89999999999998
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.17 E-value=3.1e-11 Score=98.41 Aligned_cols=49 Identities=18% Similarity=0.369 Sum_probs=44.8
Q ss_pred CCCCCChHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 67 KHGGFSEEEDNIICSLYISIG----SRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 67 kkg~WTeEED~~Llelv~~~G----~kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
.+++||.|||.+|++++..|| ++|.+||++|||||.++||+||+.++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 367999999999999999996 6899999999999999999999988755
No 55
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.17 E-value=4.4e-12 Score=99.21 Aligned_cols=56 Identities=16% Similarity=0.402 Sum_probs=50.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCC--CCcceecccccccccCcccccccccccc
Q 036344 7 CDKANVKKGPWSPEEDAKLKAYIEQHGTG--GNWIALPHKIGLKRCGKSCRLRWLNYLR 63 (354)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~k~G~~--~nW~~IAk~lg~~Rt~kQCReRW~n~L~ 63 (354)
-+++...+++||+|||++|+++|.+||.+ .+|.+||+.|| +||.+||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 57788899999999999999999999931 37999999999 9999999999998764
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.17 E-value=3.7e-11 Score=102.50 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=49.1
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhhh
Q 036344 63 RPNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQ----LPGRTDNDIKNYWNTRLKKKL 117 (354)
Q Consensus 63 ~P~lkkg~WTeEED~~Llelv~~~G~-kWs~IAk~----LpGRT~nqcKnRW~slLrkk~ 117 (354)
....++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++...
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34567899999999999999999998 99999987 499999999999999997543
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.97 E-value=7.3e-10 Score=90.51 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=59.1
Q ss_pred CccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCCHHHHHhhC-----CCCCHHHHHHHHHHHhhhhhhch
Q 036344 51 GKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQL-----PGRTDNDIKNYWNTRLKKKLLGK 120 (354)
Q Consensus 51 ~kQCReRW~n~L~P~lkkg~WTeEED~~Llelv~~~G~kWs~IAk~L-----pGRT~nqcKnRW~slLrkk~~~k 120 (354)
..=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.+..+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34578999999976 89999999999999999999999999998 58999999999999988866443
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.1e-09 Score=82.17 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=44.2
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 036344 67 KHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114 (354)
Q Consensus 67 kkg~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLr 114 (354)
..++||+||++++++++..||++|..||++||+||..+|+.+|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976543
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.81 E-value=4.7e-10 Score=91.46 Aligned_cols=49 Identities=12% Similarity=0.335 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCCcceecccccccccCccccccccccc
Q 036344 13 KKGPWSPEEDAKLKAYIEQHGT--GGNWIALPHKIGLKRCGKSCRLRWLNYL 62 (354)
Q Consensus 13 kKG~WT~EEDe~L~~lV~k~G~--~~nW~~IAk~lg~~Rt~kQCReRW~n~L 62 (354)
.+++||+|||++|.+++.+||. ...|..||+.|| +||.++|+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4689999999999999999974 147999999999 999999999998874
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.78 E-value=8.3e-09 Score=80.35 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=44.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 65 NIKHGGFSEEEDNIICSLYISIG----SRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 65 ~lkkg~WTeEED~~Llelv~~~G----~kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
....+.||.||+.+|.+++.+|+ .+|.+||+++ |||..+|++||+.+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 35678999999999999999997 5899999998 99999999999987655
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.69 E-value=2e-08 Score=93.56 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=46.5
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 036344 67 KHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 67 kkg~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk 116 (354)
..++||+||++++++++.+||++|..||+.+++||..+||++|.+..++.
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999999999999877663
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.3e-08 Score=76.41 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=46.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCcccccccccc
Q 036344 7 CDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNY 61 (354)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~ 61 (354)
+++.....++||+||++++.+++.+||. +|..||+.|+ +|+..+|+++|...
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk--~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK--NFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHSTT--CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 4566677899999999999999999996 8999999999 99999999999654
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.50 E-value=2.3e-08 Score=76.12 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCcceecc---cccccccCcccccccccccc
Q 036344 12 VKKGPWSPEEDAKLKAYIEQHGTGGNWIALPH---KIGLKRCGKSCRLRWLNYLR 63 (354)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk---~lg~~Rt~kQCReRW~n~L~ 63 (354)
-++.+||+|||+.|++.|++||. +|..|+. .+. +|+...+++||++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~--~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN--HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS--CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH--hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 47889999999999999999997 9999994 444 8999999999998654
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.42 E-value=1.8e-07 Score=95.27 Aligned_cols=47 Identities=13% Similarity=0.281 Sum_probs=43.5
Q ss_pred CCCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 69 GGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 69 g~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
..||+||-+++++++.+||.+|..||+.+++||..|||++|....++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999865444
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.41 E-value=4e-07 Score=71.26 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=44.4
Q ss_pred CCCCChHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 036344 68 HGGFSEEEDNIICSLYISIGS----RWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 68 kg~WTeEED~~Llelv~~~G~----kWs~IAk~LpGRT~nqcKnRW~slLrkk 116 (354)
...||.+|+.+|.+++..|+. +|..||..++|||..+|+.||..+++..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 468999999999999999984 6999999999999999999999886553
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.32 E-value=6.6e-07 Score=67.05 Aligned_cols=47 Identities=17% Similarity=0.339 Sum_probs=42.4
Q ss_pred CCCCChHHHHHHHHHHHHh--------CC-CHHHHHh-hCCCCCHHHHHHHHHHHhh
Q 036344 68 HGGFSEEEDNIICSLYISI--------GS-RWSIIAA-QLPGRTDNDIKNYWNTRLK 114 (354)
Q Consensus 68 kg~WTeEED~~Llelv~~~--------G~-kWs~IAk-~LpGRT~nqcKnRW~slLr 114 (354)
+.+||+|||.+|++.|.++ |+ -|..+++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 55 4999999 8999999999999987664
No 67
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.29 E-value=8.7e-08 Score=74.59 Aligned_cols=53 Identities=13% Similarity=0.269 Sum_probs=45.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC--CCCcceecccccccccCccccccccccccC
Q 036344 10 ANVKKGPWSPEEDAKLKAYIEQHGT--GGNWIALPHKIGLKRCGKSCRLRWLNYLRP 64 (354)
Q Consensus 10 p~lkKG~WT~EEDe~L~~lV~k~G~--~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P 64 (354)
++.+++.||.|||++|.+++.+|+. ...|.+||+.+ +|+.++|+.||..+...
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 4567889999999999999999974 24799999997 59999999999876543
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.21 E-value=2e-07 Score=69.86 Aligned_cols=48 Identities=21% Similarity=0.482 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCCcceecc-cccccccCcccccccccccc
Q 036344 14 KGPWSPEEDAKLKAYIEQH--------GTGGNWIALPH-KIGLKRCGKSCRLRWLNYLR 63 (354)
Q Consensus 14 KG~WT~EEDe~L~~lV~k~--------G~~~nW~~IAk-~lg~~Rt~kQCReRW~n~L~ 63 (354)
+.+||+|||+.|+++|.++ |. .-|..+++ .++ +|+-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn-~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGN-ALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSS-HHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccH-HHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5689999999999999999 43 46999999 677 9999999999999875
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.04 E-value=1.1e-06 Score=81.88 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=46.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCcccccccccccc
Q 036344 10 ANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLR 63 (354)
Q Consensus 10 p~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~ 63 (354)
.....++||+||++++++++.+||. +|..||+.++ +|+..||+.+|+++.+
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK--DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS--CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3355789999999999999999997 8999999999 9999999999998764
No 70
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=1.2e-05 Score=60.54 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=44.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHHH
Q 036344 64 PNIKHGGFSEEEDNIICSLYISIGSRWSIIAA-QLPGRTDNDIKNYWNT 111 (354)
Q Consensus 64 P~lkkg~WTeEED~~Llelv~~~G~kWs~IAk-~LpGRT~nqcKnRW~s 111 (354)
|.+....||+||-.+..+.+.+||.+|..|++ .|++||..+|...|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 66778899999999999999999999999999 4899999999988763
No 71
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.01 E-value=7.2e-06 Score=66.70 Aligned_cols=46 Identities=20% Similarity=0.390 Sum_probs=43.1
Q ss_pred CCChHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 70 GFSEEEDNIICSLYISIGS---RWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 70 ~WTeEED~~Llelv~~~G~---kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
-||.|||+.||...++-|. .|..||+.|.+|+.++|++||+.+++-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 5999999999999999997 899999999999999999999988754
No 72
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.94 E-value=1.5e-06 Score=67.96 Aligned_cols=49 Identities=20% Similarity=0.476 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CCCcceecccccccccCcccccccccccc
Q 036344 14 KGPWSPEEDAKLKAYIEQHGT--GGNWIALPHKIGLKRCGKSCRLRWLNYLR 63 (354)
Q Consensus 14 KG~WT~EEDe~L~~lV~k~G~--~~nW~~IAk~lg~~Rt~kQCReRW~n~L~ 63 (354)
...||.+|+++|.+++..|+. ...|..||+.+| +|+..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 457999999999999999964 357999999999 8999999999988754
No 73
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.06 E-value=2.2e-06 Score=66.34 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=41.5
Q ss_pred CCChHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHHhh
Q 036344 70 GFSEEEDNIICSLYISIGS---RWSIIAAQLPGRTDNDIKNYWNTRLK 114 (354)
Q Consensus 70 ~WTeEED~~Llelv~~~G~---kWs~IAk~LpGRT~nqcKnRW~slLr 114 (354)
-||.|||..||..+++-|. .|..||+.| +||.++|++||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999998 899999999 9999999999998765
No 74
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.79 E-value=4.7e-05 Score=62.12 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=50.9
Q ss_pred ccccccccCCCCCCCCChHHHHHHHHHHHHhCCCHHHHHhhCC-----CCCHHHHHHHHHHHhhhhhhc
Q 036344 56 LRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLP-----GRTDNDIKNYWNTRLKKKLLG 119 (354)
Q Consensus 56 eRW~n~L~P~lkkg~WTeEED~~Llelv~~~G~kWs~IAk~Lp-----GRT~nqcKnRW~slLrkk~~~ 119 (354)
+.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||-.++|.||..+.++.+..
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34555554 3689999999999999999999999998873 799999999999998887643
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.73 E-value=5.1e-06 Score=65.12 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=38.6
Q ss_pred CCCCChHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHH
Q 036344 68 HGGFSEEEDNIICSLYISIGS----RWSIIAAQLPGRTDNDIKNYWN 110 (354)
Q Consensus 68 kg~WTeEED~~Llelv~~~G~----kWs~IAk~LpGRT~nqcKnRW~ 110 (354)
.++||.+|+++|.+++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999985 8999999999999999999874
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.66 E-value=6.2e-05 Score=72.86 Aligned_cols=101 Identities=14% Similarity=0.192 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccc-------cccc------cc-------------------
Q 036344 15 GPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRL-------RWLN------YL------------------- 62 (354)
Q Consensus 15 G~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCRe-------RW~n------~L------------------- 62 (354)
+.||..+...++.++.+||. .+|..||..++ +++...++. ||.. ++
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr-~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~ 188 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGR-DDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA 188 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCT-TCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH-HHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999998 69999999998 777755432 1100 00
Q ss_pred ------------------cCCCCCCCCChHHHHHHHHHHHHhCC----CHHHHH---h---------hCCCCCHHHHHHH
Q 036344 63 ------------------RPNIKHGGFSEEEDNIICSLYISIGS----RWSIIA---A---------QLPGRTDNDIKNY 108 (354)
Q Consensus 63 ------------------~P~lkkg~WTeEED~~Llelv~~~G~----kWs~IA---k---------~LpGRT~nqcKnR 108 (354)
-+..+...||++||..||-++.+||- .|..|. + ++..||+.+|..|
T Consensus 189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR 268 (304)
T 1ofc_X 189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR 268 (304)
T ss_dssp HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 02224458999999999999999996 699996 2 4568999999999
Q ss_pred HHHHhhhhh
Q 036344 109 WNTRLKKKL 117 (354)
Q Consensus 109 W~slLrkk~ 117 (354)
-+.|++-..
T Consensus 269 c~tLi~~ie 277 (304)
T 1ofc_X 269 CNTLITLIE 277 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987643
No 77
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.56 E-value=0.00014 Score=55.97 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=40.5
Q ss_pred CCCCChHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHH
Q 036344 68 HGGFSEEEDNIICSLYISIGSRWSIIAA-QLPGRTDNDIKNYWN 110 (354)
Q Consensus 68 kg~WTeEED~~Llelv~~~G~kWs~IAk-~LpGRT~nqcKnRW~ 110 (354)
...||+||-.+..+.+.+||.+|..|++ .|++||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4689999999999999999999999999 599999999999886
No 78
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.54 E-value=0.00013 Score=59.11 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=41.2
Q ss_pred CCCCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHH
Q 036344 68 HGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111 (354)
Q Consensus 68 kg~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~s 111 (354)
...||+||.++..+.+..||.+|..||..|++||..+|-.+|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999988764
No 79
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.51 E-value=1.4e-05 Score=62.66 Aligned_cols=45 Identities=11% Similarity=0.303 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CCCcceecccccccccCcccccccc
Q 036344 14 KGPWSPEEDAKLKAYIEQHGT--GGNWIALPHKIGLKRCGKSCRLRWL 59 (354)
Q Consensus 14 KG~WT~EEDe~L~~lV~k~G~--~~nW~~IAk~lg~~Rt~kQCReRW~ 59 (354)
...||.||+++|.+++.+|.. ...|.+||+.+| +|+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 458999999999999999965 357999999999 899999999984
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=7.7e-05 Score=56.16 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecc-cccccccCccccccccc
Q 036344 8 DKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPH-KIGLKRCGKSCRLRWLN 60 (354)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk-~lg~~Rt~kQCReRW~n 60 (354)
-.|.++...||+||-++..+.+.+||. +|..|++ .++ +|+..+|..-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK--NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS--CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 457788899999999999999999997 8999998 588 8999999887754
No 81
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.11 E-value=0.00035 Score=54.91 Aligned_cols=49 Identities=14% Similarity=0.380 Sum_probs=41.0
Q ss_pred CCCCCChHHHHHHHHHHHHhCC----------CHHHHHhhCC----CCCHHHHHHHHHHHhhh
Q 036344 67 KHGGFSEEEDNIICSLYISIGS----------RWSIIAAQLP----GRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 67 kkg~WTeEED~~Llelv~~~G~----------kWs~IAk~Lp----GRT~nqcKnRW~slLrk 115 (354)
+...||.+|-..||+++..... .|..||..|. .||+.||+++|.+|.+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999976321 5999999873 69999999999998765
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.01 E-value=0.00018 Score=73.51 Aligned_cols=49 Identities=20% Similarity=0.357 Sum_probs=44.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCcccccccccc
Q 036344 10 ANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNY 61 (354)
Q Consensus 10 p~lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~ 61 (354)
......+||.||-+++++++.+||. +|..||+.++ +|+..|||..|.++
T Consensus 376 ~~~~~~~WT~eE~~~f~~al~~yGk--dw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 376 IQKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHHTT--CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445789999999999999999997 8999999999 89999999998765
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.00 E-value=0.00014 Score=59.22 Aligned_cols=48 Identities=13% Similarity=0.290 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCcceeccccc----ccccCccccccccccc
Q 036344 13 KKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIG----LKRCGKSCRLRWLNYL 62 (354)
Q Consensus 13 kKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg----~~Rt~kQCReRW~n~L 62 (354)
+..+||.||++.|++++++||. .|..|+..+. .+|+....++||....
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdl--RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC--CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 4489999999999999999997 8999999983 2799999999997754
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.36 E-value=0.00083 Score=54.40 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccc
Q 036344 14 KGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLN 60 (354)
Q Consensus 14 KG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n 60 (354)
...||+||.+++.+.+.+||. +|..||+.|+ +|+..+|.+.|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK--~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK--NFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT--CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CHHHHHHHcC-CCCHHHHHHHHhc
Confidence 467999999999999999997 8999999999 9999999987743
No 85
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.34 E-value=0.00024 Score=55.86 Aligned_cols=50 Identities=22% Similarity=0.515 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--------CCCcceecccc---cccccCccccccccccc
Q 036344 13 KKGPWSPEEDAKLKAYIEQHGT--------GGNWIALPHKI---GLKRCGKSCRLRWLNYL 62 (354)
Q Consensus 13 kKG~WT~EEDe~L~~lV~k~G~--------~~nW~~IAk~l---g~~Rt~kQCReRW~n~L 62 (354)
+...||.+|...|+++....-. ...|..||..| |..|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999875311 12599999886 46799999999998765
No 86
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.31 E-value=0.001 Score=51.11 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCcceecc-cccccccCccccccccc
Q 036344 13 KKGPWSPEEDAKLKAYIEQHGTGGNWIALPH-KIGLKRCGKSCRLRWLN 60 (354)
Q Consensus 13 kKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk-~lg~~Rt~kQCReRW~n 60 (354)
....||+||-++..+.+.+||. +|..|++ .++ +|+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK--DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS--CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 3458999999999999999998 8999999 588 9999999987753
No 87
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.22 E-value=0.015 Score=52.01 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=37.2
Q ss_pred CCChHHHHHHHHHHHHhC-CCHHHHHhh--C------------CCCCHHHHHHHHHHHhhhh
Q 036344 70 GFSEEEDNIICSLYISIG-SRWSIIAAQ--L------------PGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 70 ~WTeEED~~Llelv~~~G-~kWs~IAk~--L------------pGRT~nqcKnRW~slLrkk 116 (354)
.||++||..||..+.+|| .+|..|-.- | ..++...+..|-..+|+-.
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 599999999999999999 799999652 1 1245667888888777643
No 88
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.19 E-value=0.0012 Score=53.83 Aligned_cols=48 Identities=15% Similarity=0.335 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-CCCcceecccccccccCcccccccccc
Q 036344 13 KKGPWSPEEDAKLKAYIEQHGT-GGNWIALPHKIGLKRCGKSCRLRWLNY 61 (354)
Q Consensus 13 kKG~WT~EEDe~L~~lV~k~G~-~~nW~~IAk~lg~~Rt~kQCReRW~n~ 61 (354)
+--.||.|||..|+....+.|. ...|..||+.|+ +|++.|+++|++..
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 3457999999999999999987 457999999999 89999999999764
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.05 E-value=0.001 Score=51.46 Aligned_cols=48 Identities=13% Similarity=0.270 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CCCcceecccccccccCcccccccccccc
Q 036344 14 KGPWSPEEDAKLKAYIEQHGT-GGNWIALPHKIGLKRCGKSCRLRWLNYLR 63 (354)
Q Consensus 14 KG~WT~EEDe~L~~lV~k~G~-~~nW~~IAk~lg~~Rt~kQCReRW~n~L~ 63 (354)
--.||.|||..|+....+.|. ...|..||+.| +|++.|+.+|+...++
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 347999999999999999987 45799999988 5999999999987654
No 90
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.83 E-value=0.015 Score=57.66 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=75.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccc-------cc------cccc-------------------
Q 036344 15 GPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRL-------RW------LNYL------------------- 62 (354)
Q Consensus 15 G~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCRe-------RW------~n~L------------------- 62 (354)
+.||.-+=..++.+..+||. .+-..||..|+.+++...++. || .+++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR-~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGR-NSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCT-TCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH-hHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999998 689999998853455533331 11 0000
Q ss_pred ---------c----------CC-CCCCCCChHHHHHHHHHHHHhCC----CHHHHHhh------------CCCCCHHHHH
Q 036344 63 ---------R----------PN-IKHGGFSEEEDNIICSLYISIGS----RWSIIAAQ------------LPGRTDNDIK 106 (354)
Q Consensus 63 ---------~----------P~-lkkg~WTeEED~~Llelv~~~G~----kWs~IAk~------------LpGRT~nqcK 106 (354)
+ +. .+...||++||..||-++.+||- .|..|-.. |..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 0 11 13447999999999999999995 69999443 3579999999
Q ss_pred HHHHHHhhhhh
Q 036344 107 NYWNTRLKKKL 117 (354)
Q Consensus 107 nRW~slLrkk~ 117 (354)
.|-+.|++-..
T Consensus 283 rRc~tLi~~Ie 293 (374)
T 2y9y_A 283 RRGNTLLQCLE 293 (374)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.26 E-value=0.24 Score=37.60 Aligned_cols=47 Identities=11% Similarity=-0.012 Sum_probs=40.2
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCC---HHHHHhhC--CCCCHHHHHHHHHHH
Q 036344 66 IKHGGFSEEEDNIICSLYISIGSR---WSIIAAQL--PGRTDNDIKNYWNTR 112 (354)
Q Consensus 66 lkkg~WTeEED~~Llelv~~~G~k---Ws~IAk~L--pGRT~nqcKnRW~sl 112 (354)
..+-.||+|..+..++++.++|.. +..|.+.| +|.|..+|+.|...+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 345679999999999999999964 78998875 799999999997654
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.20 E-value=0.022 Score=46.37 Aligned_cols=49 Identities=12% Similarity=0.296 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCcceeccccc----ccccCccccccccccc
Q 036344 12 VKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIG----LKRCGKSCRLRWLNYL 62 (354)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg----~~Rt~kQCReRW~n~L 62 (354)
++...||.||.+.|++++++|.- .|..|+.... ..|+-.+.++||....
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl--Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC--CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999997 8999998864 2577778888887653
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.17 E-value=0.19 Score=44.80 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=41.1
Q ss_pred CCCCCCChHHHHHHHHHHHHhC---CCHHHHHhh--CCCCCHHHHHHHHHHHhhh
Q 036344 66 IKHGGFSEEEDNIICSLYISIG---SRWSIIAAQ--LPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 66 lkkg~WTeEED~~Llelv~~~G---~kWs~IAk~--LpGRT~nqcKnRW~slLrk 115 (354)
-....||..|-..|+.++.+|| .+|..|++. |.+||...|+..+..++..
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999 489999864 7899999999877766544
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.00 E-value=0.35 Score=46.77 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=43.4
Q ss_pred CCCCChHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 68 HGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 68 kg~WTeEED~~Llelv~~~G~-kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
.+.||..+...++.+..+||. .|..||..++|+|...|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 457999999999999999997 899999999999999998887776665
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=76.80 E-value=2 Score=40.70 Aligned_cols=28 Identities=32% Similarity=0.634 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcceecc
Q 036344 15 GPWSPEEDAKLKAYIEQHGTGGNWIALPH 43 (354)
Q Consensus 15 G~WT~EEDe~L~~lV~k~G~~~nW~~IAk 43 (354)
..|+.+||..|+..|-+||. ++|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGy-G~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGY-GSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcC-CcHHHHhc
Confidence 56999999999999999999 79999853
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=75.66 E-value=5.9 Score=37.50 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=42.3
Q ss_pred CCCCChHHHHHHHHHHHHhCC---CHHHHHh--hCCCCCHHHHHHHHHHHhhh
Q 036344 68 HGGFSEEEDNIICSLYISIGS---RWSIIAA--QLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 68 kg~WTeEED~~Llelv~~~G~---kWs~IAk--~LpGRT~nqcKnRW~slLrk 115 (354)
+++||+.|-..|+..+.+||. +|..|+. .|+.|+...++.-+..++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 578999999999999999994 8999985 47999999999998877654
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=71.74 E-value=1.5 Score=33.16 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=33.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC-CCcceecccccc-cccCccccccc
Q 036344 11 NVKKGPWSPEEDAKLKAYIEQHGTG-GNWIALPHKIGL-KRCGKSCRLRW 58 (354)
Q Consensus 11 ~lkKG~WT~EEDe~L~~lV~k~G~~-~nW~~IAk~lg~-~Rt~kQCReRW 58 (354)
...+-.||+|.-++..++|.+.|.. ..+..|.+.|+. +.|..+++-+.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHL 53 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL 53 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHH
Confidence 3456789999999999999999952 236777776652 34445554443
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=64.42 E-value=11 Score=26.56 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 74 EED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
+.+..++.++...|-.+.+||..+ |-+...|+.+.+..+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455666777777899999999999 88999999887765544
No 99
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=60.79 E-value=34 Score=26.92 Aligned_cols=87 Identities=14% Similarity=0.060 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccccC------CCCCCCCChHHHHHHHHHHHHhCCC
Q 036344 16 PWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRP------NIKHGGFSEEEDNIICSLYISIGSR 89 (354)
Q Consensus 16 ~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P------~lkkg~WTeEED~~Llelv~~~G~k 89 (354)
..|.++-..++.++ .-|. .-.+||+.+|.. ...+ .||.+.... .-.....+++++..|+++...-+-.
T Consensus 6 ~~s~~~r~~i~~~~-~~G~--s~~~ia~~lgis--~~Tv-~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 6 ALSDTERAQLDVMK-LLNV--SLHEMSRKISRS--RHCI-RVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCHHHHHHHHHHH-HTTC--CHHHHHHHHTCC--HHHH-HHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred cCCHHHHHHHHHHH-HcCC--CHHHHHHHHCcC--HHHH-HHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 47888888887776 3464 788999998743 2222 234332211 1122357888888888873322234
Q ss_pred HHHHHhhCCC--CCHHHHHHHH
Q 036344 90 WSIIAAQLPG--RTDNDIKNYW 109 (354)
Q Consensus 90 Ws~IAk~LpG--RT~nqcKnRW 109 (354)
-..|+..| | -+...|....
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHHH
Confidence 57888888 4 5666665544
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=60.18 E-value=14 Score=26.82 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHH----hCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 036344 74 EEDNIICSLYIS----IGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 74 EED~~Llelv~~----~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk 116 (354)
+.+..++.+..- .|..|.+||..+ |-+...|+.+....+++.
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 445556666554 578999999999 899999999877666553
No 101
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=55.70 E-value=14 Score=26.36 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=31.7
Q ss_pred HHHHHHHHHHH----HhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 036344 74 EEDNIICSLYI----SIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 74 EED~~Llelv~----~~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk 116 (354)
+.+..++.+.. ..|..+.+||+.+ |-|...|+.+....+++.
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34455555554 3578999999999 899999999888766553
No 102
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=49.44 E-value=24 Score=26.69 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 74 EED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
+.+..++.++...|-.-.+||+.| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445566677667788999999999 89999999988766554
No 103
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=45.46 E-value=19 Score=29.40 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 78 IICSLYISIGS--------RWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 78 ~Llelv~~~G~--------kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
+|..+|.+.|. .|..||..|.--....+|.+|..+|-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 46777777774 799999998444478899999887765
No 104
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=45.40 E-value=3.9 Score=33.58 Aligned_cols=40 Identities=13% Similarity=0.324 Sum_probs=29.7
Q ss_pred HHHHHHHHhCC------CCCcceecccccccccCccccccccccccC
Q 036344 24 KLKAYIEQHGT------GGNWIALPHKIGLKRCGKSCRLRWLNYLRP 64 (354)
Q Consensus 24 ~L~~lV~k~G~------~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P 64 (354)
+|..+|.+.|. ...|..||..++... +...|..|.++|-|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 57777877764 257999999998544 67778888887754
No 105
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=43.61 E-value=39 Score=33.45 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=40.5
Q ss_pred CCCCChHHHHHHHHHHHHhCC-CHHHHHhhCC-CCCHHHHHHHHHHHhhh
Q 036344 68 HGGFSEEEDNIICSLYISIGS-RWSIIAAQLP-GRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 68 kg~WTeEED~~Llelv~~~G~-kWs~IAk~Lp-GRT~nqcKnRW~slLrk 115 (354)
.+.||.-|=..++.+..+||. .-..||..|. |+|...|+.+......+
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R 172 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSN 172 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHT
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 457999999999999999997 5999999997 99999999665555443
No 106
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=42.57 E-value=46 Score=26.39 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=26.7
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCCCC----HHHHHHHHHHHhhh
Q 036344 78 IICSLYISIG--------SRWSIIAAQLPGRT----DNDIKNYWNTRLKK 115 (354)
Q Consensus 78 ~Llelv~~~G--------~kWs~IAk~LpGRT----~nqcKnRW~slLrk 115 (354)
+|..+|.+.| +.|..||..|.--. ...+|..|..+|-.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4666677777 37999999983322 45778888777654
No 107
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=40.78 E-value=45 Score=27.53 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=24.4
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 85 ~~G~kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
..|-...+||..+ |-+...|+++....+++
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3577899999999 88999999988766554
No 108
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=40.72 E-value=26 Score=29.42 Aligned_cols=45 Identities=9% Similarity=0.021 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhc
Q 036344 74 EEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (354)
Q Consensus 74 EED~~Llelv~~~G~-kWs~IAk~LpGRT~nqcKnRW~slLrkk~~~ 119 (354)
+-|.+|+++..+-|. .|..||+.+ |=|...|+.|++.+....+..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 457888888877765 899999999 899999999999998876544
No 109
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=39.78 E-value=45 Score=27.14 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCCCC----HHHHHHHHHHHhhh
Q 036344 78 IICSLYISIGS--------RWSIIAAQLPGRT----DNDIKNYWNTRLKK 115 (354)
Q Consensus 78 ~Llelv~~~G~--------kWs~IAk~LpGRT----~nqcKnRW~slLrk 115 (354)
+|..+|.+.|. .|..||..|.--. ...+|.+|..+|-.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46777777773 7999999983222 45788888877665
No 110
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=39.55 E-value=58 Score=23.27 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 036344 71 FSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 71 WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk 116 (354)
+|+.|- .++.++ ..|-.-.+||..+ |-+...|+.+....+++.
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 445444 444555 6788999999999 889999999887766553
No 111
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=38.16 E-value=7.5 Score=32.50 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=32.9
Q ss_pred CCcceecccccccccC----ccccccccccccCCCCCCCCChHHHHHHHHHHH
Q 036344 36 GNWIALPHKIGLKRCG----KSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYI 84 (354)
Q Consensus 36 ~nW~~IAk~lg~~Rt~----kQCReRW~n~L~P~lkkg~WTeEED~~Llelv~ 84 (354)
..|..||..|+...+. ...|..|.++|.|=- ..+++|-..|.+-+.
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 5799999999854433 346888988887632 377888888876654
No 112
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=37.43 E-value=49 Score=24.79 Aligned_cols=42 Identities=10% Similarity=0.100 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHH----hCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 036344 74 EEDNIICSLYIS----IGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 74 EED~~Llelv~~----~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk 116 (354)
+.+..++.+..- .|-.+..||..+ |-|...|+.+-...+++.
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 345556666554 577999999999 899999998877665553
No 113
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=36.39 E-value=21 Score=31.67 Aligned_cols=23 Identities=35% Similarity=0.754 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHH--------HHHHHhCC
Q 036344 12 VKKGPWSPEEDAKLK--------AYIEQHGT 34 (354)
Q Consensus 12 lkKG~WT~EEDe~L~--------~lV~k~G~ 34 (354)
-..|-||+|+|+.|. ++++|||.
T Consensus 112 N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 112 NVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp TCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 346679999999875 47778874
No 114
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=35.69 E-value=28 Score=28.92 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=28.0
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 78 IICSLYISIGS--------RWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 78 ~Llelv~~~G~--------kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
+|..+|.+.|. .|..||..|.--....+|..|.++|-.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 35566666663 699999988444488999999887765
No 115
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.43 E-value=55 Score=26.88 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=25.7
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCCC--C--HHHHHHHHHHHhhh
Q 036344 78 IICSLYISIGS--------RWSIIAAQLPGR--T--DNDIKNYWNTRLKK 115 (354)
Q Consensus 78 ~Llelv~~~G~--------kWs~IAk~LpGR--T--~nqcKnRW~slLrk 115 (354)
+|..+|.+.|. .|..|+..|.-- + ...+|.+|..+|-.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46677777773 799999998332 2 34677777766544
No 116
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=35.28 E-value=60 Score=26.66 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=26.2
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCCCC----HHHHHHHHHHHhhh
Q 036344 78 IICSLYISIGS--------RWSIIAAQLPGRT----DNDIKNYWNTRLKK 115 (354)
Q Consensus 78 ~Llelv~~~G~--------kWs~IAk~LpGRT----~nqcKnRW~slLrk 115 (354)
+|..+|.+.|. .|..||..|.--+ ...+|..|..+|..
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777773 7999999983322 34677777766654
No 117
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=34.00 E-value=63 Score=24.67 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 036344 70 GFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 70 ~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk 116 (354)
..|+.|-+.|.- + ..|..-.+||..| |-+...|+.+....+++.
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466666655554 4 7888999999999 889999999888766553
No 118
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=33.94 E-value=6.4 Score=32.35 Aligned_cols=40 Identities=13% Similarity=0.310 Sum_probs=27.3
Q ss_pred HHHHHHHHhCC------CCCcceeccccccccc---Ccccccccccccc
Q 036344 24 KLKAYIEQHGT------GGNWIALPHKIGLKRC---GKSCRLRWLNYLR 63 (354)
Q Consensus 24 ~L~~lV~k~G~------~~nW~~IAk~lg~~Rt---~kQCReRW~n~L~ 63 (354)
+|..+|.+.|. ...|..||..|+...+ +...|..|.++|.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~ 92 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVY 92 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 57788888874 2579999999985432 2345666666664
No 119
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=33.79 E-value=6.7 Score=31.54 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCC------CCCcceeccccccccc----CccccccccccccC
Q 036344 23 AKLKAYIEQHGT------GGNWIALPHKIGLKRC----GKSCRLRWLNYLRP 64 (354)
Q Consensus 23 e~L~~lV~k~G~------~~nW~~IAk~lg~~Rt----~kQCReRW~n~L~P 64 (354)
-+|..+|.+.|. ...|..||..|+...+ +...+..|.++|-|
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 356777777763 1479999999985432 35578888888765
No 120
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=33.63 E-value=1.8e+02 Score=23.60 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCccccccccccc------cCCCC----CCCCChHHHHHHHHHHH
Q 036344 15 GPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYL------RPNIK----HGGFSEEEDNIICSLYI 84 (354)
Q Consensus 15 G~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L------~P~lk----kg~WTeEED~~Llelv~ 84 (354)
.+.|.++-..++.++. .|. ...+||+.++. +.. .-.||.+.. .+... ....++++.+.|++++.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~--s~~~IA~~lgi--s~~-TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV--RPCDISRQLRV--SHG-CVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC--CHHHHHHHHTC--CSH-HHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC--CHHHHHHHHCc--CHH-HHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4688898888888874 565 78899999873 322 233454432 22221 23478888888888876
Q ss_pred Hh
Q 036344 85 SI 86 (354)
Q Consensus 85 ~~ 86 (354)
+.
T Consensus 98 ~~ 99 (159)
T 2k27_A 98 QN 99 (159)
T ss_dssp HC
T ss_pred HC
Confidence 53
No 121
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=33.33 E-value=65 Score=23.91 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=33.8
Q ss_pred CCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 036344 70 GFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 70 ~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk 116 (354)
..|+.|-+.|.- + ..|..-.+||+.| |-+...|+.+.+.++++.
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466666655544 4 6788999999999 889999999888766553
No 122
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=33.10 E-value=76 Score=21.50 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 036344 76 DNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 76 D~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk 116 (354)
+..++.+ ...|-.-.+||..| |-+...|+.+...++++.
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 4455666 46788899999999 889999999888766653
No 123
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=33.04 E-value=86 Score=23.95 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=36.1
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 036344 67 KHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 67 kkg~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk 116 (354)
.....|+.|-+.|.-+. .|..-.+||..| |-+...|+++...++++.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34567887777665544 899999999999 889999999998877664
No 124
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=32.94 E-value=65 Score=22.51 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=34.2
Q ss_pred CCCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 036344 69 GGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 69 g~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk 116 (354)
..+|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+...++++.
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3567766665554 4 6788999999999 789999999888766553
No 125
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=32.57 E-value=77 Score=25.23 Aligned_cols=41 Identities=10% Similarity=0.010 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 74 EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 74 EED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
+.+..++.++...|-...+||..+ |-+...|+.+.+..+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345566667777899999999999 88999999887766554
No 126
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=31.07 E-value=78 Score=25.67 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhc
Q 036344 74 EEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (354)
Q Consensus 74 EED~~Llelv~~~G~-kWs~IAk~LpGRT~nqcKnRW~slLrkk~~~ 119 (354)
+-|..|+.+....|. .+..||+.+ |=+...|..+.+.+.+..+..
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 446677777777664 899999999 789999999999998876654
No 127
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=30.96 E-value=74 Score=26.91 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 77 NIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 77 ~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
..++.++...|-...+||+.| |-|...|+.+....+++
T Consensus 193 r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 193 KLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 334444444577899999999 88999998887665544
No 128
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=30.64 E-value=64 Score=25.48 Aligned_cols=30 Identities=27% Similarity=0.206 Sum_probs=24.0
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 85 ~~G~kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
..|-...+||+.| |-|...|+++....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4577899999999 88999999888765544
No 129
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=29.19 E-value=89 Score=25.67 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=28.2
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCC--CC---CHHHHHHHHHHHhhh
Q 036344 78 IICSLYISIG--------SRWSIIAAQLP--GR---TDNDIKNYWNTRLKK 115 (354)
Q Consensus 78 ~Llelv~~~G--------~kWs~IAk~Lp--GR---T~nqcKnRW~slLrk 115 (354)
+|..+|.+.| +.|..||..|. .. ....+|..|..+|..
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 5667777777 37999999982 22 256789999887765
No 130
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=28.95 E-value=6.3 Score=32.80 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=27.5
Q ss_pred HHHHHHHHhCC------CCCcceeccccccccc----CccccccccccccC
Q 036344 24 KLKAYIEQHGT------GGNWIALPHKIGLKRC----GKSCRLRWLNYLRP 64 (354)
Q Consensus 24 ~L~~lV~k~G~------~~nW~~IAk~lg~~Rt----~kQCReRW~n~L~P 64 (354)
+|..+|.+.|. ...|..||..|+...+ +...|..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777763 1479999999985432 23456777777654
No 131
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=28.86 E-value=87 Score=24.95 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHH
Q 036344 72 SEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKN 107 (354)
Q Consensus 72 TeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKn 107 (354)
++.-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 66677788888899999999999999 777776654
No 132
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.20 E-value=10 Score=31.38 Aligned_cols=40 Identities=20% Similarity=0.459 Sum_probs=26.6
Q ss_pred HHHHHHHHhCC------CCCcceeccccccccc---Ccccccccccccc
Q 036344 24 KLKAYIEQHGT------GGNWIALPHKIGLKRC---GKSCRLRWLNYLR 63 (354)
Q Consensus 24 ~L~~lV~k~G~------~~nW~~IAk~lg~~Rt---~kQCReRW~n~L~ 63 (354)
+|..+|.+.|. ...|..|+..|+...+ +...|..|.++|.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 57777887774 2579999999985432 1345666666664
No 133
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=28.07 E-value=1.1e+02 Score=24.52 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCcceecccccccccCcccccccccc-----ccCCCCCCC----CChHHHHHHHHH
Q 036344 12 VKKGPWSPEEDAKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNY-----LRPNIKHGG----FSEEEDNIICSL 82 (354)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~-----L~P~lkkg~----WTeEED~~Llel 82 (354)
....+.|.++-..++.++ ..|. ...+||+.++ .+...++.-...+ +.+....|. .++++.+.|+++
T Consensus 28 ~~~~~~s~e~r~~iv~~~-~~G~--s~~~iA~~lg--is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~ 102 (149)
T 1k78_A 28 VNGRPLPDVVRQRIVELA-HQGV--RPCDISRQLR--VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEY 102 (149)
T ss_dssp CTTSCCCHHHHHHHHHHH-HTTC--CHHHHHHHHT--CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHH-HcCC--CHHHHHHHHC--cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHH
Q ss_pred HHHhCC-CHHHHHhhC---------CCCCHHHHHHHHHHHhhhh
Q 036344 83 YISIGS-RWSIIAAQL---------PGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 83 v~~~G~-kWs~IAk~L---------pGRT~nqcKnRW~slLrkk 116 (354)
+.+... .-..|+..| ..-+...|....+..+..+
T Consensus 103 ~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~~~ 146 (149)
T 1k78_A 103 KRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQQP 146 (149)
T ss_dssp HHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC----
T ss_pred HHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHhcCC
No 134
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=27.84 E-value=29 Score=28.54 Aligned_cols=30 Identities=20% Similarity=0.067 Sum_probs=24.0
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 85 SIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 85 ~~G~kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
..|-...+||+.| |-+...|+++....+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3477889999998 88999999988776554
No 135
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=27.29 E-value=75 Score=26.98 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhc
Q 036344 73 EEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (354)
Q Consensus 73 eEED~~Llelv~~~G~-kWs~IAk~LpGRT~nqcKnRW~slLrkk~~~ 119 (354)
.+-|..|+.+..+.|. .+.+||+.+ |-+...|..|.+.+.+..+..
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 3556677777777664 899999999 789999999999998876654
No 136
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=27.26 E-value=88 Score=26.44 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=27.8
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCC--CC---CHHHHHHHHHHHhhh
Q 036344 78 IICSLYISIGS--------RWSIIAAQLP--GR---TDNDIKNYWNTRLKK 115 (354)
Q Consensus 78 ~Llelv~~~G~--------kWs~IAk~Lp--GR---T~nqcKnRW~slLrk 115 (354)
+|..+|.+.|. .|..||..|. .. ....+|..|..+|-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46677777774 7999999983 22 256789999887765
No 137
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=26.00 E-value=43 Score=26.04 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=24.4
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCC---C-CHHHHHHHHHHHhh
Q 036344 78 IICSLYISIG--------SRWSIIAAQLPG---R-TDNDIKNYWNTRLK 114 (354)
Q Consensus 78 ~Llelv~~~G--------~kWs~IAk~LpG---R-T~nqcKnRW~slLr 114 (354)
+|..+|.+.| +.|.+|+..|.- - ....+|..|..+|-
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 4666666666 479999998732 1 14567777766554
No 138
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=25.84 E-value=81 Score=26.10 Aligned_cols=77 Identities=22% Similarity=0.344 Sum_probs=50.8
Q ss_pred CCCCCCCHHHH--HHHHHHHHHhCCCCCcceecccccccccCccccccccccccCCCCCCCCChHHHHHHHHHHHHhCC-
Q 036344 12 VKKGPWSPEED--AKLKAYIEQHGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGS- 88 (354)
Q Consensus 12 lkKG~WT~EED--e~L~~lV~k~G~~~nW~~IAk~lg~~Rt~kQCReRW~n~L~P~lkkg~WTeEED~~Llelv~~~G~- 88 (354)
.=+.+|.+.+. +.|.+..+..|+ ....++. ++ +|. || =-+|..+|.+.|.
T Consensus 5 ~~~~r~~~~~~Fl~~L~~F~~~rGt--pl~~~P~-i~-gk~-----------lD------------L~~Ly~~V~~~GG~ 57 (121)
T 2rq5_A 5 SLGRRWGPNVQRLACIKKHLRSQGI--TMDELPL-IG-GCE-----------LD------------LACFFRLINEMGGM 57 (121)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHTTC--CCSSCCE-ET-TEE-----------CC------------HHHHHHHHHHTTSH
T ss_pred HhhHhcCCcHHHHHHHHHHHHHcCC--CCCCCCc-CC-CEe-----------cc------------HHHHHHHHHHcCcH
Confidence 34567988875 557777888887 5555553 33 332 11 1346777778874
Q ss_pred -------CHHHHHhhC--CCC---CHHHHHHHHHHHhhh
Q 036344 89 -------RWSIIAAQL--PGR---TDNDIKNYWNTRLKK 115 (354)
Q Consensus 89 -------kWs~IAk~L--pGR---T~nqcKnRW~slLrk 115 (354)
.|..||..| |.- ....+|.+|..+|-.
T Consensus 58 ~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 58 QQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 799999998 322 245789999877765
No 139
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=24.84 E-value=99 Score=25.17 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhc
Q 036344 74 EEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119 (354)
Q Consensus 74 EED~~Llelv~~~G~-kWs~IAk~LpGRT~nqcKnRW~slLrkk~~~ 119 (354)
+-|..|+.+....|. .+..||+.+ |-+...|..|.+.+....+..
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 345677777776664 899999999 789999999999998876654
No 140
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=23.95 E-value=74 Score=23.84 Aligned_cols=44 Identities=25% Similarity=0.143 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 036344 70 GFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 70 ~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk 116 (354)
..|+.|-+.|. ++ ..|..-.+||..| |-+...|+.+...++++.
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 35666655554 44 6788999999999 889999999888766553
No 141
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=22.94 E-value=1.3e+02 Score=24.00 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 036344 71 FSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115 (354)
Q Consensus 71 WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrk 115 (354)
+++ .+..++.++...|-.-.+||..+ |-|...|+.+.+..+++
T Consensus 23 L~~-~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 23 LTD-KQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp SCH-HHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344 44566667777899999999999 89999999888766544
No 142
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=22.28 E-value=92 Score=25.22 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHH
Q 036344 76 DNIICSLYISIGSRWSIIAAQLPGRTDNDIKN 107 (354)
Q Consensus 76 D~~Llelv~~~G~kWs~IAk~LpGRT~nqcKn 107 (354)
|..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567777888999999999999 666666543
No 143
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=22.06 E-value=19 Score=30.66 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=27.8
Q ss_pred HHHHHHHHhCC------CCCcceeccccccccc----CccccccccccccC
Q 036344 24 KLKAYIEQHGT------GGNWIALPHKIGLKRC----GKSCRLRWLNYLRP 64 (354)
Q Consensus 24 ~L~~lV~k~G~------~~nW~~IAk~lg~~Rt----~kQCReRW~n~L~P 64 (354)
+|..+|.+.|. ...|..||..|+...+ +...+..|.++|-|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46666766664 1579999999985432 23567778888765
No 144
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=21.77 E-value=69 Score=28.41 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=14.6
Q ss_pred CCCCCCCCChHHHHHHH
Q 036344 64 PNIKHGGFSEEEDNIIC 80 (354)
Q Consensus 64 P~lkkg~WTeEED~~Ll 80 (354)
|.-..|-||.|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 55678999999999886
No 145
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=20.52 E-value=1.2e+02 Score=24.73 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=25.2
Q ss_pred CCCCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHH
Q 036344 68 HGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKN 107 (354)
Q Consensus 68 kg~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKn 107 (354)
...=|.+ .|-.+....|..|..+|+.| |=+..+|..
T Consensus 19 ~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 19 NSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp GSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred cCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3344444 45556788999999999999 666666543
No 146
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.36 E-value=2e+02 Score=22.36 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=36.0
Q ss_pred CCCCChHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 036344 68 HGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116 (354)
Q Consensus 68 kg~WTeEED~~Llelv~~~G~kWs~IAk~LpGRT~nqcKnRW~slLrkk 116 (354)
....|+.|-+.|.- + ..|..-.+||..| |-+...|+.+...++++.
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 45678887776644 3 3788999999999 789999999888776654
Done!