Query 036345
Match_columns 954
No_of_seqs 483 out of 4428
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 11:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.1E-89 6.7E-94 804.7 44.7 654 3-696 2-675 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.9E-63 4.1E-68 622.1 50.4 719 130-929 134-908 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.9E-43 4.2E-48 379.9 15.9 278 177-461 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 2E-24 4.3E-29 272.2 16.1 360 534-926 92-464 (968)
5 PLN00113 leucine-rich repeat r 99.9 4.1E-24 8.9E-29 269.3 15.8 374 534-926 163-559 (968)
6 KOG0444 Cytoskeletal regulator 99.9 5.5E-25 1.2E-29 233.5 -7.0 321 535-928 55-376 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 3.7E-23 8E-28 219.7 -7.0 321 534-928 31-353 (1255)
8 PLN03210 Resistant to P. syrin 99.8 2.4E-19 5.3E-24 225.5 24.8 318 534-907 588-910 (1153)
9 KOG4194 Membrane glycoprotein 99.8 8.3E-21 1.8E-25 201.1 4.4 152 534-698 77-233 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 7.6E-22 1.7E-26 200.1 -7.4 151 534-697 67-217 (565)
11 KOG4194 Membrane glycoprotein 99.8 6E-20 1.3E-24 194.7 4.5 339 533-922 100-447 (873)
12 KOG0618 Serine/threonine phosp 99.7 6.2E-19 1.3E-23 197.4 -4.2 261 537-843 47-330 (1081)
13 KOG0472 Leucine-rich repeat pr 99.7 5.6E-20 1.2E-24 186.6 -11.8 350 536-925 46-469 (565)
14 KOG0618 Serine/threonine phosp 99.6 5E-18 1.1E-22 190.2 -7.7 269 541-842 4-283 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 1.7E-14 3.7E-19 168.0 14.7 116 538-680 204-319 (788)
16 PRK15370 E3 ubiquitin-protein 99.5 4E-14 8.8E-19 166.3 11.6 115 536-672 179-293 (754)
17 KOG4658 Apoptotic ATPase [Sign 99.5 1.2E-14 2.7E-19 173.2 4.1 322 555-924 520-856 (889)
18 PRK04841 transcriptional regul 99.4 1.7E-11 3.7E-16 154.2 27.7 293 171-511 13-332 (903)
19 PRK15370 E3 ubiquitin-protein 99.4 1.4E-13 2.9E-18 161.9 7.7 225 534-833 198-426 (754)
20 PRK00411 cdc6 cell division co 99.4 7.5E-11 1.6E-15 132.8 29.6 323 169-506 27-380 (394)
21 KOG0617 Ras suppressor protein 99.4 2E-14 4.2E-19 129.6 -4.0 142 534-686 55-196 (264)
22 PRK15387 E3 ubiquitin-protein 99.4 4.3E-12 9.3E-17 148.2 13.7 236 534-873 221-456 (788)
23 KOG0617 Ras suppressor protein 99.3 2.1E-14 4.6E-19 129.4 -4.8 125 555-691 30-155 (264)
24 TIGR03015 pepcterm_ATPase puta 99.3 4.6E-10 1E-14 119.3 21.0 182 199-385 43-242 (269)
25 TIGR02928 orc1/cdc6 family rep 99.2 9.6E-09 2.1E-13 114.5 30.2 303 170-487 13-351 (365)
26 COG2909 MalT ATP-dependent tra 99.2 4.6E-09 9.9E-14 119.1 23.3 296 171-511 18-338 (894)
27 PF01637 Arch_ATPase: Archaeal 99.2 1E-10 2.2E-15 121.7 9.7 195 174-380 1-233 (234)
28 cd00116 LRR_RI Leucine-rich re 99.1 2.9E-12 6.4E-17 140.3 -2.9 248 552-833 17-289 (319)
29 KOG4237 Extracellular matrix p 99.1 1.9E-12 4.1E-17 132.5 -4.2 138 541-692 52-194 (498)
30 cd00116 LRR_RI Leucine-rich re 99.1 3.7E-12 8.1E-17 139.5 -4.1 93 579-672 16-118 (319)
31 PRK00080 ruvB Holliday junctio 99.1 1.7E-09 3.7E-14 117.7 16.5 277 171-485 24-309 (328)
32 TIGR00635 ruvB Holliday juncti 99.1 3.3E-09 7.2E-14 114.8 16.3 275 172-485 4-288 (305)
33 KOG4237 Extracellular matrix p 99.0 1E-11 2.3E-16 127.1 -3.7 273 534-833 66-357 (498)
34 PF05729 NACHT: NACHT domain 98.9 5.8E-09 1.3E-13 101.9 11.5 143 200-348 1-163 (166)
35 COG2256 MGS1 ATPase related to 98.9 6.5E-09 1.4E-13 108.2 11.8 171 171-377 29-208 (436)
36 PTZ00112 origin recognition co 98.9 1.6E-07 3.5E-12 107.5 23.3 213 171-385 754-986 (1164)
37 PRK06893 DNA replication initi 98.8 7E-08 1.5E-12 98.8 14.3 152 200-382 40-204 (229)
38 PRK13342 recombination factor 98.7 2.6E-07 5.6E-12 103.7 16.8 178 172-383 12-198 (413)
39 KOG0532 Leucine-rich repeat (L 98.7 7.8E-10 1.7E-14 118.8 -3.4 122 557-692 74-195 (722)
40 COG3899 Predicted ATPase [Gene 98.7 4E-07 8.6E-12 110.1 18.7 312 173-508 1-383 (849)
41 PF05496 RuvB_N: Holliday junc 98.7 2.4E-07 5.1E-12 90.5 12.6 182 171-385 23-225 (233)
42 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.9E-07 6.4E-12 94.9 13.9 171 177-384 22-204 (226)
43 KOG2028 ATPase related to the 98.6 6.9E-07 1.5E-11 91.2 14.5 159 196-376 159-331 (554)
44 KOG3207 Beta-tubulin folding c 98.6 1E-08 2.3E-13 107.1 1.4 123 765-900 212-336 (505)
45 PF13401 AAA_22: AAA domain; P 98.6 8.7E-08 1.9E-12 89.3 6.8 118 198-317 3-125 (131)
46 KOG1909 Ran GTPase-activating 98.6 2.3E-09 5.1E-14 108.9 -4.0 258 583-901 27-309 (382)
47 PF14580 LRR_9: Leucine-rich r 98.6 3E-08 6.5E-13 95.0 3.6 130 554-698 15-152 (175)
48 PRK04195 replication factor C 98.6 6.5E-06 1.4E-10 94.4 22.8 249 171-461 13-272 (482)
49 COG1474 CDC6 Cdc6-related prot 98.6 4.2E-06 9.2E-11 90.9 19.7 206 172-381 17-238 (366)
50 PRK14961 DNA polymerase III su 98.6 2.5E-06 5.5E-11 93.9 18.3 182 171-379 15-218 (363)
51 PRK05564 DNA polymerase III su 98.6 2E-06 4.3E-11 93.0 17.2 180 172-381 4-190 (313)
52 KOG0532 Leucine-rich repeat (L 98.5 4.5E-09 9.8E-14 113.1 -3.9 195 585-833 74-271 (722)
53 PRK14963 DNA polymerase III su 98.5 3E-07 6.6E-12 104.2 10.4 197 172-378 14-214 (504)
54 PRK07003 DNA polymerase III su 98.5 5.4E-06 1.2E-10 95.1 20.2 182 171-382 15-222 (830)
55 COG4886 Leucine-rich repeat (L 98.5 4.7E-08 1E-12 110.3 3.8 103 582-692 112-215 (394)
56 PRK14949 DNA polymerase III su 98.5 2.2E-06 4.9E-11 100.2 17.3 184 171-381 15-220 (944)
57 PF13191 AAA_16: AAA ATPase do 98.5 1.5E-07 3.3E-12 93.8 6.3 47 173-222 1-47 (185)
58 PF13173 AAA_14: AAA domain 98.5 3.9E-07 8.6E-12 84.1 8.5 119 200-340 3-127 (128)
59 PRK14960 DNA polymerase III su 98.5 2.8E-06 6E-11 96.4 16.7 183 171-380 14-218 (702)
60 KOG1259 Nischarin, modulator o 98.5 2E-08 4.3E-13 99.5 -0.5 63 774-839 351-415 (490)
61 PF14580 LRR_9: Leucine-rich r 98.5 1.4E-07 3E-12 90.5 5.1 124 534-671 18-149 (175)
62 PTZ00202 tuzin; Provisional 98.5 5E-06 1.1E-10 88.7 16.9 168 167-348 257-434 (550)
63 PRK12402 replication factor C 98.5 3.2E-06 6.9E-11 93.2 16.3 198 172-380 15-225 (337)
64 TIGR02903 spore_lon_C ATP-depe 98.5 3.7E-06 8.1E-11 98.4 17.2 203 172-384 154-398 (615)
65 KOG4341 F-box protein containi 98.4 5.4E-09 1.2E-13 108.6 -6.1 160 772-951 291-457 (483)
66 PRK12323 DNA polymerase III su 98.4 3.6E-06 7.8E-11 95.2 15.7 181 171-381 15-225 (700)
67 cd00009 AAA The AAA+ (ATPases 98.4 1.2E-06 2.5E-11 83.7 10.2 125 175-319 1-131 (151)
68 PRK06645 DNA polymerase III su 98.4 7E-06 1.5E-10 92.7 17.7 180 172-378 21-226 (507)
69 COG4886 Leucine-rich repeat (L 98.4 1.9E-07 4.2E-12 105.3 5.2 138 540-690 98-236 (394)
70 PRK14957 DNA polymerase III su 98.4 5.7E-06 1.2E-10 94.0 16.8 187 171-384 15-224 (546)
71 KOG1909 Ran GTPase-activating 98.4 2.8E-08 6E-13 101.2 -1.5 93 555-649 27-131 (382)
72 PLN03025 replication factor C 98.4 5.2E-06 1.1E-10 90.0 15.5 182 172-378 13-197 (319)
73 KOG4341 F-box protein containi 98.4 1.4E-08 3E-13 105.6 -4.3 122 797-934 292-421 (483)
74 KOG3207 Beta-tubulin folding c 98.4 5.1E-08 1.1E-12 102.1 -0.3 147 534-691 120-276 (505)
75 PRK14956 DNA polymerase III su 98.4 2.8E-06 6E-11 93.8 13.1 197 171-379 17-220 (484)
76 cd01128 rho_factor Transcripti 98.4 5.9E-07 1.3E-11 92.0 6.6 90 198-288 15-113 (249)
77 PRK00440 rfc replication facto 98.4 9.3E-06 2E-10 88.8 16.5 181 172-379 17-201 (319)
78 PRK14962 DNA polymerase III su 98.4 9.5E-06 2.1E-10 91.4 16.6 201 171-398 13-239 (472)
79 PRK07994 DNA polymerase III su 98.4 6.2E-06 1.4E-10 95.2 15.4 195 171-381 15-220 (647)
80 PRK08727 hypothetical protein; 98.3 1.2E-05 2.7E-10 82.5 15.9 148 200-378 42-201 (233)
81 PRK13341 recombination factor 98.3 4.6E-06 1E-10 98.4 14.0 173 172-377 28-213 (725)
82 PF05621 TniB: Bacterial TniB 98.3 1.4E-05 3.1E-10 82.2 15.2 206 172-381 34-261 (302)
83 KOG2120 SCF ubiquitin ligase, 98.3 1.1E-08 2.5E-13 101.3 -7.0 59 775-833 286-349 (419)
84 PLN03150 hypothetical protein; 98.3 1.1E-06 2.4E-11 103.7 8.1 90 588-683 420-511 (623)
85 PRK14964 DNA polymerase III su 98.3 1.7E-05 3.6E-10 88.9 16.8 182 171-378 12-214 (491)
86 PRK08691 DNA polymerase III su 98.3 1.1E-05 2.4E-10 92.5 15.7 184 171-381 15-220 (709)
87 KOG1259 Nischarin, modulator o 98.3 8.6E-08 1.9E-12 95.1 -1.2 126 534-673 283-410 (490)
88 PRK14951 DNA polymerase III su 98.3 1.6E-05 3.4E-10 91.7 16.8 181 171-381 15-225 (618)
89 TIGR02397 dnaX_nterm DNA polym 98.3 3.2E-05 6.8E-10 85.9 18.6 185 171-382 13-219 (355)
90 PRK14958 DNA polymerase III su 98.3 1.5E-05 3.3E-10 90.8 15.9 184 171-380 15-219 (509)
91 PRK05896 DNA polymerase III su 98.3 9.2E-06 2E-10 92.3 13.9 197 171-383 15-223 (605)
92 PRK07471 DNA polymerase III su 98.3 2.7E-05 5.7E-10 84.9 16.9 195 171-382 18-239 (365)
93 PRK07940 DNA polymerase III su 98.2 2.5E-05 5.4E-10 85.9 16.2 183 172-381 5-213 (394)
94 PRK08084 DNA replication initi 98.2 2.7E-05 5.8E-10 80.1 15.4 151 200-381 46-209 (235)
95 PRK09087 hypothetical protein; 98.2 1.6E-05 3.5E-10 80.9 13.6 141 199-380 44-194 (226)
96 COG2255 RuvB Holliday junction 98.2 4.6E-05 1E-09 76.1 16.0 180 171-383 25-225 (332)
97 PRK08903 DnaA regulatory inact 98.2 2.1E-05 4.6E-10 80.9 14.5 152 199-385 42-203 (227)
98 TIGR00678 holB DNA polymerase 98.2 4.2E-05 9.1E-10 76.1 16.2 91 277-377 95-187 (188)
99 PRK14955 DNA polymerase III su 98.2 2E-05 4.3E-10 87.9 15.3 201 171-380 15-227 (397)
100 PRK09112 DNA polymerase III su 98.2 1.5E-05 3.3E-10 86.3 13.4 197 171-382 22-241 (351)
101 PRK09376 rho transcription ter 98.2 2.6E-06 5.7E-11 90.6 7.0 100 183-288 158-266 (416)
102 PRK14969 DNA polymerase III su 98.2 3.3E-05 7.2E-10 88.7 16.4 185 171-381 15-221 (527)
103 TIGR01242 26Sp45 26S proteasom 98.2 1.8E-05 3.9E-10 87.6 13.8 181 169-375 119-328 (364)
104 KOG2227 Pre-initiation complex 98.2 4.3E-05 9.3E-10 81.6 15.7 212 170-383 148-374 (529)
105 PRK05642 DNA replication initi 98.2 3.4E-05 7.4E-10 79.2 14.6 153 200-383 46-210 (234)
106 PF13855 LRR_8: Leucine rich r 98.2 2E-06 4.4E-11 67.4 4.3 57 587-649 2-60 (61)
107 PRK09111 DNA polymerase III su 98.2 4.6E-05 1E-09 88.2 16.7 198 171-381 23-233 (598)
108 KOG0989 Replication factor C, 98.1 1.9E-05 4.1E-10 79.7 11.3 190 171-381 35-231 (346)
109 PF00308 Bac_DnaA: Bacterial d 98.1 6.9E-05 1.5E-09 76.0 15.4 162 198-381 33-208 (219)
110 PRK14952 DNA polymerase III su 98.1 8.8E-05 1.9E-09 85.4 18.0 188 171-385 12-224 (584)
111 PRK14959 DNA polymerase III su 98.1 6.1E-05 1.3E-09 86.3 16.4 188 171-385 15-225 (624)
112 PLN03150 hypothetical protein; 98.1 3.7E-06 8E-11 99.4 6.4 108 559-676 419-529 (623)
113 PRK14954 DNA polymerase III su 98.1 8.5E-05 1.8E-09 86.2 16.8 203 171-382 15-230 (620)
114 PRK14950 DNA polymerase III su 98.1 4.4E-05 9.6E-10 89.4 14.6 196 171-381 15-221 (585)
115 PRK07133 DNA polymerase III su 98.1 0.00012 2.7E-09 85.1 17.7 185 171-382 17-221 (725)
116 PRK14970 DNA polymerase III su 98.1 0.00013 2.8E-09 81.1 17.4 182 171-378 16-206 (367)
117 PRK07764 DNA polymerase III su 98.0 0.0001 2.2E-09 88.3 17.1 180 171-378 14-218 (824)
118 PRK14953 DNA polymerase III su 98.0 0.00022 4.7E-09 81.0 18.5 183 172-381 16-220 (486)
119 PRK14087 dnaA chromosomal repl 98.0 9.7E-05 2.1E-09 83.3 15.7 167 200-382 142-320 (450)
120 KOG2543 Origin recognition com 98.0 0.00024 5.3E-09 74.1 16.9 167 171-347 5-192 (438)
121 CHL00181 cbbX CbbX; Provisiona 98.0 0.00018 3.9E-09 76.1 16.5 136 199-350 59-211 (287)
122 PF13855 LRR_8: Leucine rich r 98.0 5.7E-06 1.2E-10 64.8 4.0 60 558-627 1-61 (61)
123 PRK08451 DNA polymerase III su 98.0 0.00022 4.7E-09 80.9 18.1 181 171-381 13-218 (535)
124 PRK11331 5-methylcytosine-spec 98.0 2.1E-05 4.6E-10 85.9 9.6 121 171-303 174-298 (459)
125 TIGR00767 rho transcription te 98.0 1.1E-05 2.3E-10 86.6 7.0 90 198-288 167-265 (415)
126 TIGR03345 VI_ClpV1 type VI sec 98.0 5.8E-05 1.3E-09 91.7 14.2 152 172-347 187-362 (852)
127 PF14516 AAA_35: AAA-like doma 98.0 0.00095 2.1E-08 72.5 21.5 203 169-388 8-246 (331)
128 PRK15386 type III secretion pr 98.0 2.9E-05 6.2E-10 83.9 9.2 66 611-681 48-113 (426)
129 PF05673 DUF815: Protein of un 97.9 0.00011 2.3E-09 73.3 12.5 126 168-320 23-153 (249)
130 PRK14971 DNA polymerase III su 97.9 0.00023 4.9E-09 83.2 17.0 181 171-378 16-219 (614)
131 COG3903 Predicted ATPase [Gene 97.9 1.7E-05 3.6E-10 84.0 6.7 236 198-444 13-258 (414)
132 PRK06305 DNA polymerase III su 97.9 0.00026 5.7E-09 79.9 16.6 184 171-382 16-224 (451)
133 PRK14948 DNA polymerase III su 97.9 0.00037 8.1E-09 81.4 18.1 196 172-381 16-222 (620)
134 PRK03992 proteasome-activating 97.9 0.0001 2.2E-09 81.9 12.3 180 170-375 129-337 (389)
135 TIGR02880 cbbX_cfxQ probable R 97.9 0.00031 6.8E-09 74.3 15.4 133 201-349 60-209 (284)
136 TIGR02881 spore_V_K stage V sp 97.9 0.00024 5.1E-09 74.7 14.4 161 173-349 7-192 (261)
137 PRK06647 DNA polymerase III su 97.9 0.00046 1E-08 79.7 17.7 194 171-380 15-219 (563)
138 PHA02544 44 clamp loader, smal 97.9 0.00015 3.3E-09 78.8 13.2 150 170-346 19-171 (316)
139 TIGR00362 DnaA chromosomal rep 97.8 0.00045 9.8E-09 77.7 17.0 159 199-379 136-308 (405)
140 KOG2120 SCF ubiquitin ligase, 97.8 6.4E-07 1.4E-11 89.1 -5.2 161 735-925 206-374 (419)
141 PRK06620 hypothetical protein; 97.8 0.00025 5.4E-09 71.5 13.2 135 200-379 45-187 (214)
142 PRK14965 DNA polymerase III su 97.8 0.00037 8E-09 81.3 16.5 198 171-384 15-224 (576)
143 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.7E-10 56.7 3.3 38 616-654 2-39 (44)
144 KOG2982 Uncharacterized conser 97.8 7.9E-06 1.7E-10 81.5 1.6 202 583-831 68-288 (418)
145 TIGR02639 ClpA ATP-dependent C 97.8 0.0002 4.4E-09 86.4 13.6 156 172-348 182-358 (731)
146 PRK07399 DNA polymerase III su 97.8 0.00075 1.6E-08 72.2 16.1 196 172-381 4-221 (314)
147 PRK14088 dnaA chromosomal repl 97.8 0.00046 1E-08 77.8 15.1 159 199-378 130-302 (440)
148 PRK12422 chromosomal replicati 97.8 0.0013 2.7E-08 74.1 18.5 154 199-374 141-306 (445)
149 COG0593 DnaA ATPase involved i 97.7 0.0016 3.4E-08 70.8 18.2 167 198-381 112-290 (408)
150 PRK05563 DNA polymerase III su 97.7 0.0011 2.4E-08 77.0 18.4 193 171-379 15-218 (559)
151 COG5238 RNA1 Ran GTPase-activa 97.7 1.3E-05 2.7E-10 79.1 1.9 253 585-901 29-314 (388)
152 COG3267 ExeA Type II secretory 97.7 0.0019 4E-08 64.3 16.8 183 197-384 49-248 (269)
153 PF12799 LRR_4: Leucine Rich r 97.7 3.3E-05 7.2E-10 55.2 3.4 41 586-632 1-41 (44)
154 CHL00095 clpC Clp protease ATP 97.7 0.00023 5.1E-09 87.0 13.0 154 172-346 179-352 (821)
155 PRK05707 DNA polymerase III su 97.7 0.00095 2.1E-08 71.9 16.0 97 277-381 105-203 (328)
156 KOG0531 Protein phosphatase 1, 97.7 5.5E-06 1.2E-10 93.6 -1.9 105 556-674 70-174 (414)
157 PRK00149 dnaA chromosomal repl 97.7 0.001 2.2E-08 75.9 16.4 158 199-378 148-319 (450)
158 PRK14086 dnaA chromosomal repl 97.7 0.0013 2.9E-08 75.2 16.9 156 200-377 315-484 (617)
159 PF00004 AAA: ATPase family as 97.6 0.00022 4.8E-09 66.2 8.8 97 202-318 1-112 (132)
160 KOG2004 Mitochondrial ATP-depe 97.6 0.0014 3E-08 73.9 15.6 167 170-348 409-596 (906)
161 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00043 9.4E-09 85.0 13.1 154 172-348 173-349 (852)
162 COG0466 Lon ATP-dependent Lon 97.6 0.0014 2.9E-08 74.4 15.5 167 170-348 321-508 (782)
163 COG1373 Predicted ATPase (AAA+ 97.6 0.001 2.2E-08 73.9 14.2 147 201-380 39-191 (398)
164 KOG2982 Uncharacterized conser 97.6 3.6E-05 7.8E-10 77.0 2.4 199 736-951 68-284 (418)
165 KOG3665 ZYG-1-like serine/thre 97.6 2.9E-05 6.2E-10 91.4 1.8 131 534-674 121-262 (699)
166 PRK08116 hypothetical protein; 97.5 0.00029 6.3E-09 73.7 8.9 104 200-318 115-221 (268)
167 TIGR03689 pup_AAA proteasome A 97.5 0.0013 2.8E-08 74.3 14.6 166 171-348 181-378 (512)
168 KOG0531 Protein phosphatase 1, 97.5 2.5E-05 5.3E-10 88.3 0.3 120 540-673 77-197 (414)
169 TIGR00602 rad24 checkpoint pro 97.5 0.0005 1.1E-08 79.7 10.9 53 169-222 81-133 (637)
170 PRK11034 clpA ATP-dependent Cl 97.5 0.00069 1.5E-08 80.8 12.0 157 172-348 186-362 (758)
171 smart00382 AAA ATPases associa 97.5 0.00057 1.2E-08 64.3 9.3 87 200-290 3-90 (148)
172 PRK10865 protein disaggregatio 97.5 0.00099 2.2E-08 81.4 13.4 155 172-348 178-354 (857)
173 TIGR00763 lon ATP-dependent pr 97.4 0.0043 9.4E-08 75.6 18.4 165 172-348 320-505 (775)
174 PTZ00361 26 proteosome regulat 97.4 0.0006 1.3E-08 75.8 10.0 158 172-349 183-368 (438)
175 KOG3665 ZYG-1-like serine/thre 97.4 5.5E-05 1.2E-09 89.1 1.9 111 556-674 120-232 (699)
176 PRK08769 DNA polymerase III su 97.4 0.0049 1.1E-07 65.7 16.4 96 277-382 112-209 (319)
177 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0051 1.1E-07 75.7 18.8 138 172-317 565-717 (852)
178 PRK10787 DNA-binding ATP-depen 97.4 0.0027 5.9E-08 76.5 15.9 166 171-348 321-506 (784)
179 TIGR02639 ClpA ATP-dependent C 97.4 0.0044 9.6E-08 75.1 17.8 135 172-317 454-603 (731)
180 PRK06090 DNA polymerase III su 97.4 0.0048 1E-07 65.7 15.8 93 277-381 107-201 (319)
181 PRK15386 type III secretion pr 97.4 0.00043 9.3E-09 75.0 7.8 32 890-924 156-187 (426)
182 PRK10536 hypothetical protein; 97.3 0.0037 8E-08 63.4 13.3 137 171-319 54-214 (262)
183 PRK10865 protein disaggregatio 97.3 0.0019 4.2E-08 79.0 13.5 138 172-317 568-720 (857)
184 PTZ00454 26S protease regulato 97.3 0.0017 3.6E-08 71.9 11.8 181 170-375 143-351 (398)
185 PF13177 DNA_pol3_delta2: DNA 97.3 0.0021 4.7E-08 61.7 10.5 137 176-336 1-162 (162)
186 PRK06871 DNA polymerase III su 97.3 0.01 2.2E-07 63.5 16.4 95 276-379 105-201 (325)
187 PRK12377 putative replication 97.3 0.00045 9.7E-09 70.8 6.0 101 200-317 102-205 (248)
188 CHL00176 ftsH cell division pr 97.2 0.0051 1.1E-07 72.1 15.4 178 171-373 182-386 (638)
189 PRK08058 DNA polymerase III su 97.2 0.005 1.1E-07 66.8 14.4 148 173-346 6-180 (329)
190 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0089 1.9E-07 62.7 15.4 140 201-347 23-197 (262)
191 PF01695 IstB_IS21: IstB-like 97.2 0.00023 5E-09 69.4 3.1 101 199-318 47-150 (178)
192 KOG0991 Replication factor C, 97.2 0.0046 1E-07 60.0 11.4 45 171-221 26-70 (333)
193 COG0542 clpA ATP-binding subun 97.2 0.001 2.2E-08 77.6 8.3 134 172-317 491-643 (786)
194 PRK08181 transposase; Validate 97.2 0.001 2.2E-08 69.2 7.5 100 201-318 108-209 (269)
195 COG1222 RPT1 ATP-dependent 26S 97.1 0.011 2.4E-07 61.6 14.6 190 171-386 150-372 (406)
196 COG2607 Predicted ATPase (AAA+ 97.1 0.0055 1.2E-07 60.1 11.6 122 169-317 57-182 (287)
197 KOG1969 DNA replication checkp 97.1 0.018 3.8E-07 65.6 17.2 90 196-303 323-412 (877)
198 PRK08939 primosomal protein Dn 97.1 0.0018 3.9E-08 69.0 9.2 122 176-317 135-260 (306)
199 TIGR01241 FtsH_fam ATP-depende 97.1 0.0051 1.1E-07 71.1 13.7 181 170-375 53-260 (495)
200 PRK06964 DNA polymerase III su 97.1 0.014 3E-07 62.9 15.9 94 277-382 131-226 (342)
201 PRK06921 hypothetical protein; 97.1 0.0019 4.1E-08 67.5 9.1 99 199-317 117-224 (266)
202 PRK08118 topology modulation p 97.1 0.00019 4.1E-09 69.4 1.4 34 201-234 3-37 (167)
203 KOG4579 Leucine-rich repeat (L 97.1 2.8E-05 6.1E-10 68.7 -4.0 83 583-672 50-133 (177)
204 KOG1859 Leucine-rich repeat pr 97.1 5.2E-05 1.1E-09 84.8 -3.3 126 534-674 163-291 (1096)
205 KOG1859 Leucine-rich repeat pr 97.0 1.3E-05 2.8E-10 89.4 -8.1 102 534-649 186-290 (1096)
206 PF04665 Pox_A32: Poxvirus A32 97.0 0.00091 2E-08 67.5 5.6 35 201-237 15-49 (241)
207 PRK06526 transposase; Provisio 97.0 0.0013 2.8E-08 68.1 6.9 100 200-318 99-201 (254)
208 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0018 3.8E-08 79.0 8.9 138 172-317 566-718 (852)
209 KOG4579 Leucine-rich repeat (L 97.0 9.7E-05 2.1E-09 65.4 -1.5 95 552-657 47-141 (177)
210 PF10443 RNA12: RNA12 protein; 97.0 0.023 4.9E-07 61.7 15.9 210 177-399 1-297 (431)
211 PF07693 KAP_NTPase: KAP famil 97.0 0.029 6.3E-07 61.3 17.6 167 178-347 2-262 (325)
212 PRK13531 regulatory ATPase Rav 97.0 0.003 6.6E-08 70.0 9.4 152 172-347 20-193 (498)
213 KOG2228 Origin recognition com 97.0 0.008 1.7E-07 62.0 11.6 174 171-348 23-219 (408)
214 PRK07993 DNA polymerase III su 97.0 0.028 6.1E-07 60.8 16.6 96 276-380 106-203 (334)
215 PRK09183 transposase/IS protei 97.0 0.0029 6.3E-08 65.9 8.8 101 200-318 103-206 (259)
216 COG2812 DnaX DNA polymerase II 96.9 0.0025 5.4E-08 71.5 8.3 190 171-376 15-215 (515)
217 KOG1514 Origin recognition com 96.9 0.023 4.9E-07 64.6 15.5 206 172-384 396-624 (767)
218 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00073 1.6E-08 72.1 3.8 50 173-222 52-101 (361)
219 PRK07952 DNA replication prote 96.9 0.0046 1E-07 63.3 9.5 103 199-317 99-204 (244)
220 PRK11034 clpA ATP-dependent Cl 96.9 0.0078 1.7E-07 72.0 12.6 133 173-316 459-606 (758)
221 COG1484 DnaC DNA replication p 96.9 0.001 2.2E-08 68.9 4.6 82 199-297 105-186 (254)
222 KOG1644 U2-associated snRNP A' 96.9 0.0013 2.8E-08 62.7 4.6 101 536-647 43-149 (233)
223 CHL00095 clpC Clp protease ATP 96.9 0.0037 7.9E-08 76.7 9.8 138 172-317 509-661 (821)
224 KOG0741 AAA+-type ATPase [Post 96.9 0.025 5.4E-07 61.8 14.6 150 196-371 535-704 (744)
225 KOG0744 AAA+-type ATPase [Post 96.8 0.011 2.5E-07 60.4 11.1 79 199-287 177-259 (423)
226 PRK12608 transcription termina 96.8 0.0056 1.2E-07 65.7 9.5 101 180-287 119-229 (380)
227 PRK04296 thymidine kinase; Pro 96.8 0.0022 4.7E-08 63.6 6.1 113 200-319 3-117 (190)
228 PRK07261 topology modulation p 96.8 0.003 6.5E-08 61.4 6.8 65 201-288 2-67 (171)
229 PRK11889 flhF flagellar biosyn 96.8 0.01 2.2E-07 63.9 10.8 103 198-303 240-347 (436)
230 PRK06835 DNA replication prote 96.7 0.0021 4.5E-08 69.0 5.8 102 200-317 184-288 (329)
231 PRK04132 replication factor C 96.7 0.034 7.4E-07 66.7 16.3 155 207-381 574-731 (846)
232 COG0470 HolB ATPase involved i 96.6 0.0087 1.9E-07 65.5 9.9 145 173-337 2-170 (325)
233 PRK09361 radB DNA repair and r 96.6 0.0075 1.6E-07 61.9 8.8 47 197-246 21-67 (225)
234 COG1223 Predicted ATPase (AAA+ 96.6 0.014 3.1E-07 57.8 9.9 178 171-374 120-318 (368)
235 TIGR02902 spore_lonB ATP-depen 96.6 0.011 2.3E-07 68.6 10.8 44 172-221 65-108 (531)
236 PHA00729 NTP-binding motif con 96.6 0.011 2.3E-07 59.2 9.1 24 198-221 16-39 (226)
237 COG1875 NYN ribonuclease and A 96.6 0.0058 1.3E-07 63.8 7.4 135 175-319 227-389 (436)
238 PF07728 AAA_5: AAA domain (dy 96.6 0.00086 1.9E-08 62.9 1.2 88 202-302 2-89 (139)
239 PF02562 PhoH: PhoH-like prote 96.6 0.0039 8.4E-08 61.5 5.7 131 177-319 5-157 (205)
240 PRK08699 DNA polymerase III su 96.6 0.019 4.2E-07 61.8 11.6 71 277-347 112-184 (325)
241 TIGR02237 recomb_radB DNA repa 96.5 0.0066 1.4E-07 61.5 7.7 49 197-248 10-58 (209)
242 COG5238 RNA1 Ran GTPase-activa 96.5 0.00073 1.6E-08 67.0 0.6 100 554-654 26-135 (388)
243 TIGR01243 CDC48 AAA family ATP 96.5 0.018 3.9E-07 70.1 12.5 183 170-377 176-383 (733)
244 PRK05541 adenylylsulfate kinas 96.5 0.0078 1.7E-07 59.0 7.8 36 198-235 6-41 (176)
245 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.017 3.7E-07 59.8 10.3 90 197-287 17-124 (235)
246 cd01394 radB RadB. The archaea 96.4 0.012 2.6E-07 60.1 8.8 44 197-242 17-60 (218)
247 PF13207 AAA_17: AAA domain; P 96.4 0.002 4.3E-08 58.7 2.8 22 201-222 1-22 (121)
248 COG2884 FtsE Predicted ATPase 96.4 0.028 6E-07 53.4 10.0 61 265-325 142-204 (223)
249 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.011 2.3E-07 55.8 7.5 117 200-319 3-139 (159)
250 cd03214 ABC_Iron-Siderophores_ 96.4 0.029 6.3E-07 55.2 11.0 119 199-321 25-161 (180)
251 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.025 5.4E-07 53.2 9.8 105 199-322 26-131 (144)
252 KOG1644 U2-associated snRNP A' 96.4 0.0052 1.1E-07 58.7 5.0 92 768-873 57-151 (233)
253 KOG0733 Nuclear AAA ATPase (VC 96.4 0.033 7.2E-07 62.1 11.8 179 171-374 189-395 (802)
254 cd01393 recA_like RecA is a b 96.4 0.018 3.9E-07 59.1 9.7 88 197-287 17-123 (226)
255 COG0542 clpA ATP-binding subun 96.3 0.031 6.7E-07 65.7 12.3 155 171-347 169-345 (786)
256 KOG2035 Replication factor C, 96.3 0.016 3.4E-07 58.2 8.3 210 173-404 14-261 (351)
257 CHL00195 ycf46 Ycf46; Provisio 96.3 0.036 7.8E-07 62.9 12.4 180 172-375 228-429 (489)
258 PF00448 SRP54: SRP54-type pro 96.3 0.014 2.9E-07 58.0 8.0 88 199-288 1-93 (196)
259 PRK15455 PrkA family serine pr 96.3 0.0024 5.2E-08 71.6 2.9 49 173-221 77-125 (644)
260 TIGR01243 CDC48 AAA family ATP 96.3 0.061 1.3E-06 65.6 15.1 180 171-375 452-657 (733)
261 KOG2739 Leucine-rich acidic nu 96.3 0.0015 3.2E-08 65.2 0.9 107 583-698 40-155 (260)
262 cd03247 ABCC_cytochrome_bd The 96.3 0.028 6.2E-07 55.1 10.0 117 200-322 29-161 (178)
263 PRK12724 flagellar biosynthesi 96.2 0.015 3.2E-07 63.6 8.5 24 198-221 222-245 (432)
264 PRK13695 putative NTPase; Prov 96.2 0.0053 1.1E-07 60.1 4.7 22 201-222 2-23 (174)
265 TIGR02238 recomb_DMC1 meiotic 96.2 0.017 3.6E-07 61.8 8.8 71 181-256 82-156 (313)
266 cd01120 RecA-like_NTPases RecA 96.2 0.016 3.4E-07 56.0 8.0 39 201-241 1-39 (165)
267 PF08423 Rad51: Rad51; InterP 96.2 0.016 3.4E-07 60.3 8.2 57 198-255 37-97 (256)
268 PF00158 Sigma54_activat: Sigm 96.2 0.0063 1.4E-07 58.6 4.9 131 174-318 1-144 (168)
269 cd03228 ABCC_MRP_Like The MRP 96.2 0.026 5.5E-07 55.0 9.2 118 199-323 28-160 (171)
270 PRK15429 formate hydrogenlyase 96.2 0.11 2.4E-06 62.9 16.5 134 172-318 376-521 (686)
271 PRK06696 uridine kinase; Valid 96.1 0.0052 1.1E-07 62.8 4.3 43 177-222 3-45 (223)
272 PF14532 Sigma54_activ_2: Sigm 96.1 0.0037 8E-08 58.4 2.9 108 175-318 1-110 (138)
273 COG4608 AppF ABC-type oligopep 96.1 0.036 7.7E-07 56.4 9.8 125 199-326 39-178 (268)
274 cd03238 ABC_UvrA The excision 96.1 0.027 5.9E-07 54.7 8.8 122 199-332 21-161 (176)
275 PRK06067 flagellar accessory p 96.1 0.031 6.7E-07 57.7 9.9 87 197-288 23-130 (234)
276 PF07724 AAA_2: AAA domain (Cd 96.1 0.0047 1E-07 59.7 3.5 40 199-240 3-43 (171)
277 TIGR02012 tigrfam_recA protein 96.1 0.013 2.8E-07 62.3 7.0 84 197-287 53-142 (321)
278 cd00983 recA RecA is a bacter 96.1 0.014 3.1E-07 62.0 7.2 84 197-287 53-142 (325)
279 TIGR03499 FlhF flagellar biosy 96.1 0.017 3.6E-07 61.2 7.9 88 198-287 193-281 (282)
280 cd03223 ABCD_peroxisomal_ALDP 96.1 0.05 1.1E-06 52.6 10.6 118 199-322 27-152 (166)
281 cd03222 ABC_RNaseL_inhibitor T 96.1 0.043 9.4E-07 53.4 10.1 103 199-322 25-136 (177)
282 PTZ00494 tuzin-like protein; P 96.1 0.86 1.9E-05 49.6 20.1 168 167-348 366-544 (664)
283 KOG2123 Uncharacterized conser 96.0 0.00073 1.6E-08 67.3 -2.4 100 556-668 17-123 (388)
284 PLN03186 DNA repair protein RA 96.0 0.024 5.3E-07 61.1 8.7 71 181-256 109-183 (342)
285 PRK14722 flhF flagellar biosyn 96.0 0.017 3.6E-07 62.8 7.4 89 198-288 136-225 (374)
286 TIGR02239 recomb_RAD51 DNA rep 96.0 0.028 6E-07 60.4 9.1 70 181-255 82-155 (316)
287 COG1136 SalX ABC-type antimicr 96.0 0.056 1.2E-06 54.0 10.3 62 264-325 146-210 (226)
288 KOG0730 AAA+-type ATPase [Post 95.9 0.059 1.3E-06 61.0 11.4 160 171-350 433-617 (693)
289 PLN03187 meiotic recombination 95.9 0.031 6.6E-07 60.3 9.1 59 197-256 124-186 (344)
290 cd03216 ABC_Carb_Monos_I This 95.9 0.026 5.6E-07 54.4 7.8 115 200-321 27-145 (163)
291 COG4618 ArpD ABC-type protease 95.9 0.024 5.2E-07 62.0 8.1 57 268-324 480-538 (580)
292 PRK09354 recA recombinase A; P 95.9 0.019 4.1E-07 61.6 7.3 84 197-287 58-147 (349)
293 cd01131 PilT Pilus retraction 95.9 0.013 2.7E-07 58.6 5.7 111 200-322 2-113 (198)
294 PRK05703 flhF flagellar biosyn 95.9 0.044 9.5E-07 61.4 10.3 103 199-303 221-326 (424)
295 cd01133 F1-ATPase_beta F1 ATP 95.9 0.026 5.7E-07 58.3 7.9 88 198-287 68-172 (274)
296 TIGR01817 nifA Nif-specific re 95.9 0.11 2.4E-06 60.8 14.2 136 169-318 193-341 (534)
297 cd03230 ABC_DR_subfamily_A Thi 95.8 0.055 1.2E-06 52.8 9.8 118 199-322 26-159 (173)
298 KOG1051 Chaperone HSP104 and r 95.8 0.045 9.7E-07 65.3 10.4 122 173-305 563-687 (898)
299 PTZ00035 Rad51 protein; Provis 95.8 0.047 1E-06 59.1 9.9 71 181-256 104-178 (337)
300 PHA02244 ATPase-like protein 95.8 0.029 6.2E-07 60.2 8.0 22 201-222 121-142 (383)
301 PF13671 AAA_33: AAA domain; P 95.8 0.032 7E-07 52.4 7.7 21 201-221 1-21 (143)
302 PF13604 AAA_30: AAA domain; P 95.8 0.011 2.3E-07 59.0 4.5 108 200-319 19-132 (196)
303 COG1126 GlnQ ABC-type polar am 95.8 0.14 3E-06 50.0 11.7 60 265-324 141-202 (240)
304 PRK04301 radA DNA repair and r 95.7 0.052 1.1E-06 58.8 10.1 57 198-255 101-161 (317)
305 KOG0731 AAA+-type ATPase conta 95.7 0.18 4E-06 59.0 14.7 183 171-378 310-521 (774)
306 TIGR02974 phageshock_pspF psp 95.7 0.14 3E-06 55.6 13.1 45 174-222 1-45 (329)
307 cd03246 ABCC_Protease_Secretio 95.7 0.053 1.2E-06 52.9 9.1 116 200-322 29-160 (173)
308 KOG0735 AAA+-type ATPase [Post 95.7 0.067 1.5E-06 60.8 10.6 161 198-380 430-615 (952)
309 PRK12727 flagellar biosynthesi 95.6 0.038 8.2E-07 62.1 8.3 89 198-288 349-438 (559)
310 PRK12723 flagellar biosynthesi 95.6 0.06 1.3E-06 59.1 9.7 89 198-289 173-265 (388)
311 PRK12726 flagellar biosynthesi 95.6 0.074 1.6E-06 57.3 10.0 91 197-289 204-296 (407)
312 PRK14974 cell division protein 95.6 0.083 1.8E-06 56.9 10.5 89 198-289 139-233 (336)
313 PF03215 Rad17: Rad17 cell cyc 95.6 0.085 1.8E-06 60.4 11.1 60 172-236 19-78 (519)
314 KOG1947 Leucine rich repeat pr 95.5 0.0012 2.6E-08 76.9 -3.9 61 613-673 186-254 (482)
315 PF00560 LRR_1: Leucine Rich R 95.5 0.0054 1.2E-07 36.4 0.8 18 617-634 2-19 (22)
316 TIGR01650 PD_CobS cobaltochela 95.5 0.29 6.3E-06 52.0 14.3 60 174-246 47-106 (327)
317 COG1618 Predicted nucleotide k 95.5 0.012 2.5E-07 54.3 3.2 23 200-222 6-28 (179)
318 cd03115 SRP The signal recogni 95.5 0.071 1.5E-06 52.0 9.0 21 201-221 2-22 (173)
319 COG0396 sufC Cysteine desulfur 95.5 0.14 3.1E-06 50.4 10.6 62 267-330 151-216 (251)
320 cd03281 ABC_MSH5_euk MutS5 hom 95.4 0.021 4.6E-07 57.6 5.2 121 199-324 29-160 (213)
321 TIGR03877 thermo_KaiC_1 KaiC d 95.4 0.087 1.9E-06 54.4 9.9 48 198-249 20-67 (237)
322 COG1121 ZnuC ABC-type Mn/Zn tr 95.4 0.11 2.4E-06 52.8 10.1 123 200-322 31-203 (254)
323 KOG2123 Uncharacterized conser 95.4 0.0009 1.9E-08 66.7 -4.6 106 583-697 16-128 (388)
324 PRK00771 signal recognition pa 95.4 0.09 2E-06 58.8 10.4 57 198-256 94-151 (437)
325 PLN00020 ribulose bisphosphate 95.4 0.024 5.2E-07 60.3 5.4 26 197-222 146-171 (413)
326 KOG0733 Nuclear AAA ATPase (VC 95.4 0.22 4.7E-06 55.9 12.8 155 199-375 545-718 (802)
327 TIGR00959 ffh signal recogniti 95.3 0.081 1.8E-06 59.0 9.8 24 198-221 98-121 (428)
328 PRK08533 flagellar accessory p 95.3 0.088 1.9E-06 53.9 9.4 48 199-250 24-71 (230)
329 COG0572 Udk Uridine kinase [Nu 95.3 0.024 5.2E-07 55.9 5.0 78 197-279 6-85 (218)
330 TIGR02858 spore_III_AA stage I 95.3 0.073 1.6E-06 55.5 8.8 126 181-323 98-234 (270)
331 PRK07132 DNA polymerase III su 95.3 0.6 1.3E-05 49.5 15.7 153 198-380 17-184 (299)
332 PRK11608 pspF phage shock prot 95.3 0.046 1E-06 59.3 7.5 133 172-318 6-151 (326)
333 PF08298 AAA_PrkA: PrkA AAA do 95.3 0.018 3.9E-07 61.0 4.2 51 171-221 60-110 (358)
334 cd02025 PanK Pantothenate kina 95.2 0.052 1.1E-06 55.1 7.4 21 201-221 1-21 (220)
335 TIGR00708 cobA cob(I)alamin ad 95.2 0.1 2.2E-06 49.9 8.7 117 199-318 5-140 (173)
336 TIGR00554 panK_bact pantothena 95.2 0.067 1.5E-06 56.3 8.1 25 197-221 60-84 (290)
337 cd03217 ABC_FeS_Assembly ABC-t 95.2 0.098 2.1E-06 52.4 9.1 120 199-322 26-168 (200)
338 PRK05439 pantothenate kinase; 95.2 0.069 1.5E-06 56.6 8.2 80 196-279 83-166 (311)
339 PRK09270 nucleoside triphospha 95.2 0.063 1.4E-06 55.1 7.9 27 196-222 30-56 (229)
340 PRK07667 uridine kinase; Provi 95.2 0.021 4.6E-07 56.8 4.2 37 181-221 3-39 (193)
341 TIGR03881 KaiC_arch_4 KaiC dom 95.2 0.14 3E-06 52.7 10.4 115 198-317 19-165 (229)
342 cd03282 ABC_MSH4_euk MutS4 hom 95.1 0.04 8.7E-07 55.1 6.1 120 199-325 29-158 (204)
343 TIGR02236 recomb_radA DNA repa 95.1 0.12 2.5E-06 56.0 10.2 57 198-255 94-154 (310)
344 COG0464 SpoVK ATPases of the A 95.1 0.16 3.4E-06 59.1 11.9 158 172-349 242-424 (494)
345 cd00267 ABC_ATPase ABC (ATP-bi 95.1 0.06 1.3E-06 51.6 7.1 116 200-323 26-145 (157)
346 KOG1532 GTPase XAB1, interacts 95.1 0.075 1.6E-06 53.3 7.7 61 196-258 16-87 (366)
347 cd03229 ABC_Class3 This class 95.1 0.062 1.4E-06 52.7 7.4 24 199-222 26-49 (178)
348 COG0468 RecA RecA/RadA recombi 95.1 0.079 1.7E-06 55.1 8.3 89 196-287 57-150 (279)
349 TIGR00064 ftsY signal recognit 95.1 0.088 1.9E-06 55.3 8.8 88 198-288 71-164 (272)
350 PRK13948 shikimate kinase; Pro 95.1 0.19 4.1E-06 49.1 10.4 25 198-222 9-33 (182)
351 PRK06002 fliI flagellum-specif 95.1 0.11 2.4E-06 57.6 9.8 87 198-287 164-263 (450)
352 PF13238 AAA_18: AAA domain; P 95.0 0.015 3.2E-07 53.6 2.6 21 202-222 1-21 (129)
353 TIGR00235 udk uridine kinase. 95.0 0.018 3.8E-07 58.2 3.2 26 197-222 4-29 (207)
354 cd03235 ABC_Metallic_Cations A 95.0 0.19 4.1E-06 51.0 10.8 24 199-222 25-48 (213)
355 PF00485 PRK: Phosphoribulokin 95.0 0.016 3.4E-07 57.9 2.8 21 201-221 1-21 (194)
356 KOG0729 26S proteasome regulat 95.0 0.12 2.7E-06 51.3 8.8 96 171-287 176-279 (435)
357 cd01122 GP4d_helicase GP4d_hel 95.0 0.21 4.5E-06 52.9 11.4 54 199-255 30-83 (271)
358 PRK10867 signal recognition pa 95.0 0.081 1.7E-06 59.0 8.4 24 198-221 99-122 (433)
359 PRK00889 adenylylsulfate kinas 94.9 0.12 2.6E-06 50.5 8.8 25 198-222 3-27 (175)
360 PRK06731 flhF flagellar biosyn 94.9 0.13 2.9E-06 53.5 9.4 102 199-302 75-180 (270)
361 cd03215 ABC_Carb_Monos_II This 94.9 0.17 3.8E-06 49.8 9.9 24 199-222 26-49 (182)
362 cd02019 NK Nucleoside/nucleoti 94.9 0.017 3.6E-07 46.3 2.1 22 201-222 1-22 (69)
363 PRK05480 uridine/cytidine kina 94.9 0.02 4.3E-07 58.0 3.1 26 197-222 4-29 (209)
364 PRK06547 hypothetical protein; 94.9 0.029 6.4E-07 54.3 4.1 26 197-222 13-38 (172)
365 KOG0734 AAA+-type ATPase conta 94.8 0.11 2.4E-06 57.1 8.7 53 171-223 303-361 (752)
366 cd03213 ABCG_EPDR ABCG transpo 94.8 0.21 4.5E-06 49.8 10.3 118 199-319 35-172 (194)
367 PRK13949 shikimate kinase; Pro 94.8 0.15 3.2E-06 49.4 8.9 22 201-222 3-24 (169)
368 KOG0924 mRNA splicing factor A 94.8 0.22 4.8E-06 56.2 11.0 130 199-334 371-529 (1042)
369 cd01125 repA Hexameric Replica 94.8 0.14 3E-06 53.0 9.3 21 201-221 3-23 (239)
370 cd03369 ABCC_NFT1 Domain 2 of 94.8 0.35 7.5E-06 48.8 12.0 23 199-221 34-56 (207)
371 TIGR03878 thermo_KaiC_2 KaiC d 94.8 0.13 2.8E-06 53.8 9.0 40 198-239 35-74 (259)
372 PF01583 APS_kinase: Adenylyls 94.8 0.031 6.7E-07 52.5 3.9 36 199-236 2-37 (156)
373 PRK08233 hypothetical protein; 94.8 0.021 4.5E-07 56.4 3.0 24 199-222 3-26 (182)
374 PF03969 AFG1_ATPase: AFG1-lik 94.8 0.053 1.1E-06 59.2 6.3 101 197-315 60-165 (362)
375 PF07726 AAA_3: ATPase family 94.8 0.017 3.8E-07 51.6 2.0 27 202-230 2-28 (131)
376 KOG0728 26S proteasome regulat 94.7 1 2.3E-05 44.6 14.2 155 173-348 147-331 (404)
377 PTZ00301 uridine kinase; Provi 94.7 0.031 6.7E-07 56.0 3.9 23 199-221 3-25 (210)
378 cd03232 ABC_PDR_domain2 The pl 94.7 0.16 3.4E-06 50.5 9.0 23 199-221 33-55 (192)
379 cd03244 ABCC_MRP_domain2 Domai 94.7 0.24 5.2E-06 50.6 10.6 24 199-222 30-53 (221)
380 COG0563 Adk Adenylate kinase a 94.6 0.044 9.6E-07 53.3 4.8 22 201-222 2-23 (178)
381 PRK05022 anaerobic nitric oxid 94.6 0.095 2E-06 60.8 8.3 134 171-318 186-332 (509)
382 PF05659 RPW8: Arabidopsis bro 94.6 0.5 1.1E-05 44.1 11.4 83 2-84 3-86 (147)
383 cd03245 ABCC_bacteriocin_expor 94.6 0.22 4.8E-06 50.8 10.1 24 199-222 30-53 (220)
384 cd03283 ABC_MutS-like MutS-lik 94.6 0.2 4.4E-06 49.9 9.4 22 200-221 26-47 (199)
385 PRK10733 hflB ATP-dependent me 94.6 0.28 6E-06 58.5 12.1 158 172-349 152-336 (644)
386 TIGR03498 FliI_clade3 flagella 94.6 0.13 2.9E-06 56.9 8.8 87 198-287 139-239 (418)
387 TIGR03740 galliderm_ABC gallid 94.5 0.31 6.6E-06 49.9 10.9 24 199-222 26-49 (223)
388 PRK06762 hypothetical protein; 94.5 0.026 5.5E-07 54.8 2.8 24 199-222 2-25 (166)
389 cd01121 Sms Sms (bacterial rad 94.4 0.2 4.3E-06 55.0 9.8 95 181-287 68-167 (372)
390 PRK14721 flhF flagellar biosyn 94.4 0.14 3.1E-06 56.7 8.6 88 198-287 190-278 (420)
391 TIGR03771 anch_rpt_ABC anchore 94.4 0.31 6.8E-06 49.8 10.7 24 199-222 6-29 (223)
392 PRK09544 znuC high-affinity zi 94.4 0.24 5.2E-06 51.6 9.9 24 199-222 30-53 (251)
393 KOG0739 AAA+-type ATPase [Post 94.4 0.88 1.9E-05 46.5 13.1 96 172-288 133-235 (439)
394 cd03240 ABC_Rad50 The catalyti 94.4 0.18 3.8E-06 50.7 8.6 54 270-323 131-188 (204)
395 PF00154 RecA: recA bacterial 94.4 0.063 1.4E-06 57.0 5.5 83 198-287 52-140 (322)
396 COG1102 Cmk Cytidylate kinase 94.4 0.075 1.6E-06 49.1 5.2 44 201-257 2-45 (179)
397 cd02027 APSK Adenosine 5'-phos 94.4 0.083 1.8E-06 50.0 5.8 22 201-222 1-22 (149)
398 cd03253 ABCC_ATM1_transporter 94.3 0.3 6.4E-06 50.5 10.5 54 270-323 147-201 (236)
399 PRK05986 cob(I)alamin adenolsy 94.3 0.16 3.4E-06 49.4 7.6 117 199-318 22-158 (191)
400 PF08433 KTI12: Chromatin asso 94.3 0.1 2.2E-06 54.5 6.8 22 201-222 3-24 (270)
401 PRK09580 sufC cysteine desulfu 94.3 0.34 7.4E-06 50.5 10.9 24 199-222 27-50 (248)
402 PF00006 ATP-synt_ab: ATP synt 94.3 0.081 1.8E-06 53.0 5.8 84 200-287 16-114 (215)
403 TIGR03575 selen_PSTK_euk L-ser 94.2 0.44 9.5E-06 51.3 11.6 21 202-222 2-22 (340)
404 PRK08972 fliI flagellum-specif 94.2 0.13 2.9E-06 56.7 7.8 85 199-287 162-261 (444)
405 PF00910 RNA_helicase: RNA hel 94.2 0.022 4.8E-07 50.4 1.4 21 202-222 1-21 (107)
406 PRK06995 flhF flagellar biosyn 94.2 0.13 2.7E-06 58.1 7.7 88 199-288 256-344 (484)
407 PRK03839 putative kinase; Prov 94.2 0.03 6.5E-07 55.1 2.6 22 201-222 2-23 (180)
408 PRK15056 manganese/iron transp 94.2 0.35 7.7E-06 51.1 10.9 24 199-222 33-56 (272)
409 TIGR00390 hslU ATP-dependent p 94.2 0.089 1.9E-06 57.4 6.3 51 172-222 12-70 (441)
410 PRK04328 hypothetical protein; 94.2 0.15 3.3E-06 53.0 7.9 40 198-239 22-61 (249)
411 TIGR00150 HI0065_YjeE ATPase, 94.1 0.053 1.2E-06 49.5 3.8 39 180-222 7-45 (133)
412 PF03308 ArgK: ArgK protein; 94.1 0.07 1.5E-06 54.0 4.9 66 180-249 14-79 (266)
413 TIGR03522 GldA_ABC_ATP gliding 94.1 0.32 7E-06 52.2 10.4 24 199-222 28-51 (301)
414 PF12775 AAA_7: P-loop contain 94.1 0.035 7.6E-07 58.2 2.9 96 182-296 23-118 (272)
415 cd03233 ABC_PDR_domain1 The pl 94.1 0.47 1E-05 47.6 11.0 24 199-222 33-56 (202)
416 PRK13543 cytochrome c biogenes 94.1 0.45 9.8E-06 48.2 11.0 24 199-222 37-60 (214)
417 cd01136 ATPase_flagellum-secre 94.1 0.27 5.8E-06 52.6 9.5 85 199-287 69-168 (326)
418 PRK04040 adenylate kinase; Pro 94.0 0.038 8.2E-07 54.5 2.9 23 200-222 3-25 (188)
419 PTZ00088 adenylate kinase 1; P 94.0 0.12 2.6E-06 52.6 6.6 21 202-222 9-29 (229)
420 PRK14723 flhF flagellar biosyn 94.0 0.18 3.8E-06 59.8 8.7 87 199-288 185-273 (767)
421 cd02028 UMPK_like Uridine mono 94.0 0.076 1.6E-06 52.0 5.0 22 201-222 1-22 (179)
422 cd01135 V_A-ATPase_B V/A-type 94.0 0.19 4.2E-06 51.8 8.0 89 199-287 69-175 (276)
423 PF06309 Torsin: Torsin; Inte 94.0 0.074 1.6E-06 47.5 4.3 51 172-222 25-76 (127)
424 PRK00625 shikimate kinase; Pro 94.0 0.034 7.3E-07 53.9 2.4 22 201-222 2-23 (173)
425 COG1120 FepC ABC-type cobalami 94.0 0.41 8.9E-06 49.0 10.2 60 265-324 143-205 (258)
426 COG1428 Deoxynucleoside kinase 93.9 0.035 7.5E-07 54.0 2.3 24 199-222 4-27 (216)
427 cd03252 ABCC_Hemolysin The ABC 93.9 0.7 1.5E-05 47.7 12.3 53 271-323 149-202 (237)
428 PRK08927 fliI flagellum-specif 93.9 0.25 5.4E-06 54.9 9.1 86 198-287 157-257 (442)
429 PRK13545 tagH teichoic acids e 93.9 0.51 1.1E-05 53.6 11.7 24 199-222 50-73 (549)
430 PRK05973 replicative DNA helic 93.9 0.21 4.6E-06 50.8 8.0 49 198-250 63-111 (237)
431 TIGR01360 aden_kin_iso1 adenyl 93.9 0.041 8.8E-07 54.6 2.8 24 198-221 2-25 (188)
432 KOG1947 Leucine rich repeat pr 93.9 0.0046 1E-07 72.0 -4.7 169 736-930 185-367 (482)
433 COG0467 RAD55 RecA-superfamily 93.9 0.098 2.1E-06 54.9 5.8 50 197-250 21-70 (260)
434 COG1703 ArgK Putative periplas 93.8 0.068 1.5E-06 54.8 4.3 67 182-252 38-104 (323)
435 PRK08149 ATP synthase SpaL; Va 93.8 0.31 6.8E-06 54.0 9.7 86 198-287 150-250 (428)
436 PRK05922 type III secretion sy 93.8 0.34 7.4E-06 53.8 10.0 85 199-287 157-256 (434)
437 PRK07594 type III secretion sy 93.8 0.21 4.5E-06 55.5 8.3 86 198-287 154-254 (433)
438 cd03250 ABCC_MRP_domain1 Domai 93.8 0.89 1.9E-05 45.7 12.4 24 199-222 31-54 (204)
439 COG4088 Predicted nucleotide k 93.7 0.79 1.7E-05 44.4 10.7 21 201-221 3-23 (261)
440 PRK05917 DNA polymerase III su 93.7 1.1 2.3E-05 47.2 12.9 59 277-335 94-154 (290)
441 TIGR02655 circ_KaiC circadian 93.7 0.3 6.5E-06 56.2 9.8 61 181-249 249-309 (484)
442 PF13479 AAA_24: AAA domain 93.7 0.15 3.4E-06 51.5 6.7 20 200-219 4-23 (213)
443 PF01078 Mg_chelatase: Magnesi 93.7 0.075 1.6E-06 52.2 4.1 43 171-221 2-44 (206)
444 PF03205 MobB: Molybdopterin g 93.7 0.07 1.5E-06 49.7 3.8 39 200-239 1-39 (140)
445 COG4181 Predicted ABC-type tra 93.7 0.81 1.8E-05 42.9 10.4 87 240-326 120-215 (228)
446 cd03254 ABCC_Glucan_exporter_l 93.7 0.52 1.1E-05 48.4 10.7 23 200-222 30-52 (229)
447 TIGR02322 phosphon_PhnN phosph 93.6 0.045 9.8E-07 53.8 2.6 23 200-222 2-24 (179)
448 cd02023 UMPK Uridine monophosp 93.6 0.037 8.1E-07 55.4 2.1 21 201-221 1-21 (198)
449 PRK09519 recA DNA recombinatio 93.6 0.16 3.4E-06 60.4 7.3 85 197-288 58-148 (790)
450 TIGR01425 SRP54_euk signal rec 93.6 0.22 4.9E-06 55.2 8.1 24 198-221 99-122 (429)
451 KOG2739 Leucine-rich acidic nu 93.6 0.044 9.6E-07 54.9 2.4 61 613-674 41-103 (260)
452 PRK14269 phosphate ABC transpo 93.6 0.49 1.1E-05 49.2 10.4 23 200-222 29-51 (246)
453 cd00544 CobU Adenosylcobinamid 93.6 0.17 3.6E-06 48.8 6.3 79 202-287 2-82 (169)
454 cd02024 NRK1 Nicotinamide ribo 93.5 0.04 8.7E-07 53.9 2.0 22 201-222 1-22 (187)
455 smart00534 MUTSac ATPase domai 93.5 0.054 1.2E-06 53.4 3.0 20 201-220 1-20 (185)
456 PRK06793 fliI flagellum-specif 93.5 0.25 5.5E-06 54.8 8.4 88 198-288 155-256 (432)
457 PRK00131 aroK shikimate kinase 93.5 0.047 1E-06 53.4 2.5 24 199-222 4-27 (175)
458 COG3840 ThiQ ABC-type thiamine 93.5 0.81 1.8E-05 43.5 10.2 24 199-222 25-48 (231)
459 TIGR01359 UMP_CMP_kin_fam UMP- 93.5 0.041 8.9E-07 54.3 2.0 21 201-221 1-21 (183)
460 PRK10820 DNA-binding transcrip 93.4 0.16 3.6E-06 58.9 7.2 135 171-318 203-349 (520)
461 cd01132 F1_ATPase_alpha F1 ATP 93.4 0.24 5.2E-06 51.2 7.5 85 199-287 69-170 (274)
462 PF12061 DUF3542: Protein of u 93.4 0.18 3.9E-06 51.5 6.3 58 27-84 315-373 (402)
463 TIGR03411 urea_trans_UrtD urea 93.4 0.6 1.3E-05 48.4 10.8 24 199-222 28-51 (242)
464 PF13481 AAA_25: AAA domain; P 93.4 0.29 6.2E-06 48.7 8.0 40 201-240 34-81 (193)
465 cd01134 V_A-ATPase_A V/A-type 93.4 0.42 9.1E-06 51.0 9.3 59 183-250 146-205 (369)
466 COG3640 CooC CO dehydrogenase 93.4 0.1 2.2E-06 51.5 4.4 43 201-244 2-44 (255)
467 PRK09099 type III secretion sy 93.4 0.33 7.2E-06 54.2 9.0 87 198-287 162-262 (441)
468 TIGR03263 guanyl_kin guanylate 93.3 0.055 1.2E-06 53.3 2.7 23 200-222 2-24 (180)
469 PF08477 Miro: Miro-like prote 93.3 0.057 1.2E-06 48.8 2.6 22 202-223 2-23 (119)
470 PRK10416 signal recognition pa 93.3 0.38 8.1E-06 51.7 9.1 25 198-222 113-137 (318)
471 PF00625 Guanylate_kin: Guanyl 93.3 0.069 1.5E-06 52.7 3.3 37 200-238 3-39 (183)
472 PRK09280 F0F1 ATP synthase sub 93.3 0.33 7.2E-06 54.2 8.9 89 198-287 143-247 (463)
473 PRK10751 molybdopterin-guanine 93.3 0.068 1.5E-06 51.3 3.1 25 198-222 5-29 (173)
474 cd04159 Arl10_like Arl10-like 93.3 0.31 6.8E-06 46.3 7.9 21 202-222 2-22 (159)
475 cd03289 ABCC_CFTR2 The CFTR su 93.3 0.72 1.6E-05 48.7 11.1 24 199-222 30-53 (275)
476 PRK00279 adk adenylate kinase; 93.3 0.41 8.9E-06 48.6 9.0 21 201-221 2-22 (215)
477 cd00984 DnaB_C DnaB helicase C 93.3 0.37 8.1E-06 50.0 9.0 54 198-254 12-65 (242)
478 PRK06217 hypothetical protein; 93.2 0.052 1.1E-06 53.5 2.3 22 201-222 3-24 (183)
479 PRK15453 phosphoribulokinase; 93.2 0.34 7.5E-06 50.1 8.2 24 198-221 4-27 (290)
480 PF00560 LRR_1: Leucine Rich R 93.2 0.059 1.3E-06 31.9 1.6 22 587-614 1-22 (22)
481 COG2842 Uncharacterized ATPase 93.2 1.8 4E-05 44.7 13.2 118 172-302 72-189 (297)
482 COG2019 AdkA Archaeal adenylat 93.2 0.068 1.5E-06 49.6 2.8 23 199-221 4-26 (189)
483 PTZ00185 ATPase alpha subunit; 93.2 0.44 9.5E-06 53.3 9.4 89 199-287 189-298 (574)
484 PRK12678 transcription termina 93.2 0.13 2.8E-06 58.1 5.3 96 183-287 405-512 (672)
485 PRK05800 cobU adenosylcobinami 93.2 0.25 5.4E-06 47.8 6.8 80 201-287 3-85 (170)
486 TIGR01420 pilT_fam pilus retra 93.2 0.17 3.6E-06 55.4 6.3 113 199-322 122-234 (343)
487 cd02021 GntK Gluconate kinase 93.2 0.053 1.2E-06 51.5 2.2 22 201-222 1-22 (150)
488 PRK03846 adenylylsulfate kinas 93.1 0.071 1.5E-06 53.3 3.1 25 197-221 22-46 (198)
489 PRK05688 fliI flagellum-specif 93.1 0.42 9.2E-06 53.3 9.3 85 199-287 168-267 (451)
490 PRK05201 hslU ATP-dependent pr 93.1 0.18 3.9E-06 55.2 6.2 51 172-222 15-73 (443)
491 cd00227 CPT Chloramphenicol (C 93.1 0.059 1.3E-06 52.7 2.4 23 200-222 3-25 (175)
492 cd03287 ABC_MSH3_euk MutS3 hom 93.1 0.66 1.4E-05 47.0 10.0 121 198-324 30-160 (222)
493 COG0714 MoxR-like ATPases [Gen 93.1 0.17 3.7E-06 55.2 6.2 113 173-303 25-137 (329)
494 TIGR03496 FliI_clade1 flagella 93.0 0.3 6.5E-06 54.2 8.0 86 198-287 136-236 (411)
495 PF03193 DUF258: Protein of un 93.0 0.11 2.4E-06 49.1 3.9 35 179-222 24-58 (161)
496 PRK07196 fliI flagellum-specif 93.0 0.28 6.1E-06 54.5 7.7 25 198-222 154-178 (434)
497 PRK11823 DNA repair protein Ra 93.0 0.46 1E-05 53.8 9.7 53 181-239 66-118 (446)
498 COG1124 DppF ABC-type dipeptid 93.0 0.071 1.5E-06 53.0 2.8 23 199-221 33-55 (252)
499 PRK15064 ABC transporter ATP-b 93.0 0.82 1.8E-05 53.7 12.2 24 199-222 27-50 (530)
500 cd02020 CMPK Cytidine monophos 93.0 0.056 1.2E-06 51.1 2.0 21 201-221 1-21 (147)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-89 Score=804.74 Aligned_cols=654 Identities=28% Similarity=0.467 Sum_probs=522.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhchhhHHHH
Q 036345 3 DAVINVVLDQLISISLQEAREELRLVVGVDQEVERLKRNFRAIQAVLVDAEQRQVKEEAVRLWLDKLKHASYDMEDVLDE 82 (954)
Q Consensus 3 ~~~v~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~ed~ld~ 82 (954)
++.++..++++.+ .+..+.....+.++.+..|++.|..++++++||+.++.....+..|.+.+++++|++||.++.
T Consensus 2 ~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 2 GACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred CeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777 788888999999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCccccccccCCCcccCcchhhhhHHHHHHHHHHHHHHHHHHhhccccceeec---cC--C
Q 036345 83 WITARLKLQILQSVDGNALVPQRKVRFFSPAASCFGFKQIFLRRDIAVKIKEINQNLDDIAKLKDFFSFNVI---TS--T 157 (954)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~~---~~--~ 157 (954)
|..+....+. .+. . .++....+. .|++ .+++..+..+..+.+++-.+.+....+..... .. .
T Consensus 78 ~~v~~~~~~~--~~~--l-~~~~~~~~~----~c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~ 144 (889)
T KOG4658|consen 78 FLVEEIERKA--NDL--L-STRSVERQR----LCLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESL 144 (889)
T ss_pred HHHHHHHHHH--hHH--h-hhhHHHHHH----Hhhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccc
Confidence 9998876543 111 0 000001111 1111 33444455555555555544444333332221 11 1
Q ss_pred CCCccccccccccCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcc-cccccceEEEEE
Q 036345 158 GKSDRIQSTALINVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDND-VMNSFEIRMWVC 236 (954)
Q Consensus 158 ~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~ 236 (954)
.....+++.+..+... ||.+..++++++.|..+. ..+++|+||||+||||||+.++|+.. ++.+|+.++||+
T Consensus 145 ~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~ 217 (889)
T KOG4658|consen 145 DPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV 217 (889)
T ss_pred cchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE
Confidence 1112234444444445 999999999999998543 38999999999999999999999987 999999999999
Q ss_pred eCCCCCHHHHHHHHHHHhhcCCCCcc--cHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEe
Q 036345 237 VSDPFDEFRVARAIIEALEGSASNLG--ELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVT 314 (954)
Q Consensus 237 ~s~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiT 314 (954)
||++|+...++.+|++.++....... ..+.++..+.+.|++|||+||+||||+. .+|+.+..++|...+||+|++|
T Consensus 218 VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlT 295 (889)
T KOG4658|consen 218 VSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLT 295 (889)
T ss_pred EcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEE
Confidence 99999999999999999987544333 3468899999999999999999999985 4699999999999899999999
Q ss_pred cCchhHHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHH
Q 036345 315 TRKKTVAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLLRFKKTREE 393 (954)
Q Consensus 315 tr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~ 393 (954)
||+..|+.. |++...+++++|+.+|||+||++.+|.... ...+.++++|++++++|+|+|||++++|+.|+.+.+..+
T Consensus 296 TRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~e 374 (889)
T KOG4658|consen 296 TRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQE 374 (889)
T ss_pred eccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHH
Confidence 999999998 888889999999999999999999987543 333458999999999999999999999999999999999
Q ss_pred HHHHHhhhhhc----ccccccchhhHHHhhhcCCChhhhhHHhHhcCCCCCcccchHHHHHHHHHhcccCCCC-CchHHH
Q 036345 394 WQRILDSEMWK----LKEFEKGLLAPLLLSYNDLPTMVKRCFSYCAVFPKDYNIEKDELIKVWMAQGYIGPKE-NEEMEI 468 (954)
Q Consensus 394 w~~~l~~~~~~----~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~-~~~~e~ 468 (954)
|+++.+...+. .+++.+.++++|++||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+.+ +.++++
T Consensus 375 W~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d 454 (889)
T KOG4658|consen 375 WRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAED 454 (889)
T ss_pred HHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhc
Confidence 99998865444 3444678999999999999999999999999999999999999999999999999844 678999
Q ss_pred HHHHHHHHHHhcCCceeeeccCCCcEEEEeechhHHHHHHHhhc-----cCceEEecC-CCCchhhhhccCCCceEEEEE
Q 036345 469 IGQEYFDYLATRSFFQEFEKDEEGFVIRCKMHDIVHDFAQFLTK-----NECLAVEVD-GDEEPLMLRRTSKEKLYHLML 542 (954)
Q Consensus 469 ~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdli~dl~~~~~~-----~e~~~~~~~-~~~~~~~~~~~~~~~lr~L~l 542 (954)
+|..|+.+|++++|++..... +...+|+|||+++|+|.++++ +++.++... +... .+....+..+|++++
T Consensus 455 ~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~--~~~~~~~~~~rr~s~ 530 (889)
T KOG4658|consen 455 VGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSE--IPQVKSWNSVRRMSL 530 (889)
T ss_pred chHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccc--cccccchhheeEEEE
Confidence 999999999999999987654 566789999999999999999 666555433 2221 233445778999999
Q ss_pred EeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeec
Q 036345 543 MINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKL 622 (954)
Q Consensus 543 ~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L 622 (954)
.++.+..++.. ..+++|++|.+.++.. .+......+|..+++||+|||++|. .+.++|++|++|.|||||+|
T Consensus 531 ~~~~~~~~~~~-~~~~~L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDLs~~~-----~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 531 MNNKIEHIAGS-SENPKLRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDLSGNS-----SLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred eccchhhccCC-CCCCccceEEEeecch--hhhhcCHHHHhhCcceEEEECCCCC-----ccCcCChHHhhhhhhhcccc
Confidence 99998765554 4566899999999852 1233445668999999999999973 67899999999999999999
Q ss_pred cCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceEe
Q 036345 623 SQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVV 696 (954)
Q Consensus 623 ~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 696 (954)
++|.|..+|..+++|.+|++|++..+..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|..+..
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhhee
Confidence 999999999999999999999999988777777767779999999987643 1111122344445555544443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-63 Score=622.06 Aligned_cols=719 Identities=21% Similarity=0.282 Sum_probs=453.1
Q ss_pred HHHHHHHHHHHHHHhhccccceeec--------cCCCCCccccccccccCCceeechhhhhHHHHHhhccCCCCCCceEE
Q 036345 130 VKIKEINQNLDDIAKLKDFFSFNVI--------TSTGKSDRIQSTALINVSEVRGRDEEKNSLKSKLLCESSQQPNAIHV 201 (954)
Q Consensus 130 ~~i~~~~~~l~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~v 201 (954)
.+++++++++.+++...+....... ...........++..+.+++|||+.+++++..+|... .+++++
T Consensus 134 ~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----~~~~~v 209 (1153)
T PLN03210 134 DEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----SEEVRM 209 (1153)
T ss_pred hHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----cCceEE
Confidence 4688899999998876543211100 0111122222333445678999999999999988643 347899
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccccceEEEEEe---CCC-----------CC-HHHHHHHHHHHhhcCCC-CcccHH
Q 036345 202 ISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCV---SDP-----------FD-EFRVARAIIEALEGSAS-NLGELQ 265 (954)
Q Consensus 202 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s~~-----------~~-~~~~~~~i~~~l~~~~~-~~~~~~ 265 (954)
|+||||||+||||||+++|+ ++..+|+..+|+.. +.. ++ ...+..+++.++..... ....
T Consensus 210 vgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~-- 285 (1153)
T PLN03210 210 VGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH-- 285 (1153)
T ss_pred EEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC--
Confidence 99999999999999999999 57788988887642 111 01 12344455555433211 1111
Q ss_pred HHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHHhhhcCcceEeCCCCCHHHHHHHHH
Q 036345 266 SLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQMMESTDVFSIKELSKQECWSLFK 345 (954)
Q Consensus 266 ~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 345 (954)
...+++.++++|+||||||||+ ..+|+.+.....+.++||+||||||+..++..++...+|+++.|++++||+||+
T Consensus 286 --~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~ 361 (1153)
T PLN03210 286 --LGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFC 361 (1153)
T ss_pred --HHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHH
Confidence 2456778899999999999975 467888877666678999999999999999877778899999999999999999
Q ss_pred HHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhhhhhcccccccchhhHHHhhhcCCCh
Q 036345 346 RFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLLRFKKTREEWQRILDSEMWKLKEFEKGLLAPLLLSYNDLPT 425 (954)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 425 (954)
++||+... .++++.+++++|+++|+|+|||++++|++|+.+ +.++|..++....... +..|..+|++||++|++
T Consensus 362 ~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~ 435 (1153)
T PLN03210 362 RSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGLNN 435 (1153)
T ss_pred HHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHHhhhccCc
Confidence 99997643 345789999999999999999999999999854 7899999998755432 34699999999999987
Q ss_pred -hhhhHHhHhcCCCCCcccchHHHHHHHHHhcccCCCCCchHHHHHHHHHHHHHhcCCceeeeccCCCcEEEEeechhHH
Q 036345 426 -MVKRCFSYCAVFPKDYNIEKDELIKVWMAQGYIGPKENEEMEIIGQEYFDYLATRSFFQEFEKDEEGFVIRCKMHDIVH 504 (954)
Q Consensus 426 -~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdli~ 504 (954)
..|.||+++|+||.+..++ .+..|++.+..... .-++.|++++|++... + .+.|||+++
T Consensus 436 ~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~----------~~l~~L~~ksLi~~~~----~---~~~MHdLl~ 495 (1153)
T PLN03210 436 KKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN----------IGLKNLVDKSLIHVRE----D---IVEMHSLLQ 495 (1153)
T ss_pred cchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch----------hChHHHHhcCCEEEcC----C---eEEhhhHHH
Confidence 5999999999999887553 47788888765422 2278999999998642 1 479999999
Q ss_pred HHHHHhhccCc-------eEEecCCCCchhhhhccCCCceEEEEEEeccccC---CcccccccCcceEEEeeccCC--cc
Q 036345 505 DFAQFLTKNEC-------LAVEVDGDEEPLMLRRTSKEKLYHLMLMINLFST---FPVSIRYAKKLRSLFLVANGS--FK 572 (954)
Q Consensus 505 dl~~~~~~~e~-------~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~---~~~~~~~~~~Lr~L~l~~~~~--~~ 572 (954)
++++.+++++. +........ ..........+++.+++....... .+..+..+++|+.|.+..+.. ..
T Consensus 496 ~~~r~i~~~~~~~~~~r~~l~~~~di~-~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~ 574 (1153)
T PLN03210 496 EMGKEIVRAQSNEPGEREFLVDAKDIC-DVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKK 574 (1153)
T ss_pred HHHHHHHHhhcCCCCcceeEeCHHHHH-HHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccc
Confidence 99999987653 111100000 000112234556666665444332 133456677777776654320 00
Q ss_pred ccCCCchhhhcCC-CceeEEEecCCCccc----------------cccccccchhhhccCcCceeeccCcc-cccccccc
Q 036345 573 VLSPVLPGLFDQL-TFLRTLKITGESAGV----------------EKSIREIPKEIEKLKHLRFLKLSQVD-LEELPETC 634 (954)
Q Consensus 573 ~~~~~~~~~~~~l-~~Lr~L~L~~~~~~~----------------~~~l~~lp~~i~~L~~L~~L~L~~~~-i~~lp~~i 634 (954)
.....+|..|..+ ..||.|.+.++.... ...+..+|..+..+++|++|+|+++. +..+| .+
T Consensus 575 ~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~l 653 (1153)
T PLN03210 575 EVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DL 653 (1153)
T ss_pred cceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-cc
Confidence 0111122223332 235555555440000 00344444444445555555554433 33443 24
Q ss_pred cCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceEecCCccCcccccc-cccCC
Q 036345 635 CELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRH-LNHLR 713 (954)
Q Consensus 635 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~-L~~L~ 713 (954)
+.+++|++|+|++|..+..+|..+.++++|++|++++|..+..+|..+ ++++|+.|.+..+.. +..++. ..++.
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~----L~~~p~~~~nL~ 728 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR----LKSFPDISTNIS 728 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC----ccccccccCCcC
Confidence 445555555555554445555555555555555555554444444433 344444443322111 000000 00000
Q ss_pred ceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCc
Q 036345 714 GSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPS 793 (954)
Q Consensus 714 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~ 793 (954)
.+.+.+.. +..+ .....+++|+.|.++.+...... .............+++|+.|++++|.....+|.
T Consensus 729 -~L~L~~n~-i~~l-----P~~~~l~~L~~L~l~~~~~~~l~-----~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~ 796 (1153)
T PLN03210 729 -WLDLDETA-IEEF-----PSNLRLENLDELILCEMKSEKLW-----ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS 796 (1153)
T ss_pred -eeecCCCc-cccc-----cccccccccccccccccchhhcc-----ccccccchhhhhccccchheeCCCCCCccccCh
Confidence 11111100 0000 00112455555555443211000 000000000112357899999999987777999
Q ss_pred chhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccc
Q 036345 794 WIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLY 873 (954)
Q Consensus 794 ~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 873 (954)
+++++++|+.|+|++|...+.+|....+++|+.|+|++|..+..+|. ..++|+.|++.+.
T Consensus 797 si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~-------------------~~~nL~~L~Ls~n- 856 (1153)
T PLN03210 797 SIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD-------------------ISTNISDLNLSRT- 856 (1153)
T ss_pred hhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc-------------------cccccCEeECCCC-
Confidence 99999999999999999888888777899999999999987765543 2356777877764
Q ss_pred cccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCcchhh
Q 036345 874 EWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCPIVKE 929 (954)
Q Consensus 874 ~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 929 (954)
.++.++ ..+..+++|+.|++.+|++++.+|..+..+++|+.+++++|+.++.
T Consensus 857 ~i~~iP----~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 857 GIEEVP----WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CCccCh----HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 244433 3355788888888888888888888777788888888888887753
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.9e-43 Score=379.91 Aligned_cols=278 Identities=37% Similarity=0.635 Sum_probs=226.1
Q ss_pred chhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhc
Q 036345 177 RDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEG 256 (954)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 256 (954)
||.++++|.+.|.... ++.++|+|+||||+||||||+.++++..++.+|+.++||.++...+...++.+|+++++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998643 478999999999999999999999976789999999999999999999999999999987
Q ss_pred CCC---CcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHHhhhcC-cceEeC
Q 036345 257 SAS---NLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQMMES-TDVFSI 332 (954)
Q Consensus 257 ~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~~~~-~~~~~l 332 (954)
... ...+.+.....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 4467788999999999999999999999864 5788888888877789999999999998887665 679999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhhhhhccc---ccc
Q 036345 333 KELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLLRFKKTREEWQRILDSEMWKLK---EFE 409 (954)
Q Consensus 333 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~~~~~~~---~~~ 409 (954)
++|+.++|++||.+.++... ....+.+.+.+++|+++|+|+|||++++|++|+.+.+..+|.++++...+... +..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987655 22234556788999999999999999999999766677899999876554442 234
Q ss_pred cchhhHHHhhhcCCChhhhhHHhHhcCCCCCcccchHHHHHHHHHhcccCCC
Q 036345 410 KGLLAPLLLSYNDLPTMVKRCFSYCAVFPKDYNIEKDELIKVWMAQGYIGPK 461 (954)
Q Consensus 410 ~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 461 (954)
..+..++.+||+.||+++|.||+|||+||+++.|+++.|+++|++||||...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6799999999999999999999999999999999999999999999999864
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=2e-24 Score=272.18 Aligned_cols=360 Identities=21% Similarity=0.250 Sum_probs=245.3
Q ss_pred CCceEEEEEEecccc-CCccccc-ccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccc-ccchh
Q 036345 534 KEKLYHLMLMINLFS-TFPVSIR-YAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIR-EIPKE 610 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~-~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~-~lp~~ 610 (954)
.++++.|+++.|.+. .+|..+. .+++||+|++++|. +.+..|. ..+++|++|+|++| .+. .+|..
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~----l~~~~p~--~~l~~L~~L~Ls~n------~~~~~~p~~ 159 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN----FTGSIPR--GSIPNLETLDLSNN------MLSGEIPND 159 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc----cccccCc--cccCCCCEEECcCC------cccccCChH
Confidence 466778888877765 3565544 77888888887775 3333332 45778888888887 443 56778
Q ss_pred hhccCcCceeeccCcccc-cccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCC
Q 036345 611 IEKLKHLRFLKLSQVDLE-ELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLR 689 (954)
Q Consensus 611 i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 689 (954)
++++++|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 888888888888888875 6788888888888888888886667888888888888888888877667888888888888
Q ss_pred ccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhh
Q 036345 690 TLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSE 769 (954)
Q Consensus 690 ~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 769 (954)
+|++..+...+.....+.++.+|+ .+.+.... +.......+..+++|+.|++++|..... ++.
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~l~~l~~L~~L~Ls~n~l~~~------------~p~ 302 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQ-YLFLYQNK----LSGPIPPSIFSLQKLISLDLSDNSLSGE------------IPE 302 (968)
T ss_pred EEECcCceeccccChhHhCCCCCC-EEECcCCe----eeccCchhHhhccCcCEEECcCCeeccC------------CCh
Confidence 887765544332223333344333 34333211 1112223455678888888887764322 344
Q ss_pred cCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCC-CCCCCCCceEeecCCCCceEeCcccccCCCC
Q 036345 770 ALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPP-LGKLPSLEVLSIWNMNSVKTVGDEFLGIGGD 848 (954)
Q Consensus 770 ~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 848 (954)
.+..+++|+.|++.+|.+...+|.++..+++|+.|+|++|.+...+|. ++.+++|+.|++++|.....+|..+......
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 556778888888888888776788888888888888888887766554 7788888888888887444444433221100
Q ss_pred -----CCCCc---CCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEE
Q 036345 849 -----NGTSA---TSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLE 920 (954)
Q Consensus 849 -----~~~~~---~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 920 (954)
..+.. .......+++|+.|.+.++.-... .|..+..+++|+.|++++|.....+|..+..+++|+.|+
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 458 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE----LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458 (968)
T ss_pred CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE----CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE
Confidence 00000 011123577888888887652222 234466789999999999875556676677789999999
Q ss_pred EecCcc
Q 036345 921 IKKCPI 926 (954)
Q Consensus 921 l~~c~~ 926 (954)
+++|..
T Consensus 459 L~~n~~ 464 (968)
T PLN00113 459 LARNKF 464 (968)
T ss_pred CcCcee
Confidence 999874
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=4.1e-24 Score=269.29 Aligned_cols=374 Identities=20% Similarity=0.173 Sum_probs=227.3
Q ss_pred CCceEEEEEEecccc-CCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccc-ccchhh
Q 036345 534 KEKLYHLMLMINLFS-TFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIR-EIPKEI 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~-~lp~~i 611 (954)
..+++.|++++|.+. .+|..+.++++|++|++++|. +...+|..+.++++|++|+|++| .+. .+|..+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~----l~~~~p~~l~~l~~L~~L~L~~n------~l~~~~p~~l 232 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ----LVGQIPRELGQMKSLKWIYLGYN------NLSGEIPYEI 232 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC----CcCcCChHHcCcCCccEEECcCC------ccCCcCChhH
Confidence 456777777777654 356667777777777777765 44445666777777777777777 333 467777
Q ss_pred hccCcCceeeccCcccc-cccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCc
Q 036345 612 EKLKHLRFLKLSQVDLE-ELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRT 690 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 690 (954)
+++++|++|++++|.+. .+|..++++++|++|++++|.....+|..+.++++|++|++++|.....+|..+.++++|+.
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 77777777777777765 56777777777777777777655567777777777777777777655566666777777777
Q ss_pred cCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchh-----------
Q 036345 691 LRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDEN----------- 759 (954)
Q Consensus 691 L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~----------- 759 (954)
|++..+...+.....+..+.+|+ .+.+.+.. +.......+..+++|+.|++++|......+...
T Consensus 313 L~l~~n~~~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 313 LHLFSNNFTGKIPVALTSLPRLQ-VLQLWSNK----FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred EECCCCccCCcCChhHhcCCCCC-EEECcCCC----CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 76554443322222222333332 33332211 111122234455666666666665432211000
Q ss_pred -hhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCC-CCCCCCCceEeecCCCCceE
Q 036345 760 -EAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPP-LGKLPSLEVLSIWNMNSVKT 837 (954)
Q Consensus 760 -~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~-l~~l~~L~~L~L~~~~~l~~ 837 (954)
.+.....++..+..+++|+.|++.+|.+...+|..+..+++|+.|+|++|.+...++. +..+++|+.|++++|.....
T Consensus 388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence 0000112233445567788888877777666777777778888888888776665544 56788888888888875444
Q ss_pred eCccccc-------CCCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCCC
Q 036345 838 VGDEFLG-------IGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQL 910 (954)
Q Consensus 838 ~~~~~~~-------~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~ 910 (954)
+|..+.. ................+++|+.|+++++.-. ...|..+..+++|+.|+|++|.....+|..+
T Consensus 468 ~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 543 (968)
T PLN00113 468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS----GEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543 (968)
T ss_pred cCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce----eeCChHHcCccCCCEEECCCCcccccCChhH
Confidence 4432210 0000000011111234567777777765422 2223446678889999999987666788888
Q ss_pred CCCCCcceEEEecCcc
Q 036345 911 LRSTTLENLEIKKCPI 926 (954)
Q Consensus 911 ~~l~~L~~L~l~~c~~ 926 (954)
..+++|+.|++++|..
T Consensus 544 ~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 544 SEMPVLSQLDLSQNQL 559 (968)
T ss_pred hCcccCCEEECCCCcc
Confidence 8888999999998875
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=5.5e-25 Score=233.50 Aligned_cols=321 Identities=23% Similarity=0.242 Sum_probs=182.6
Q ss_pred CceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhcc
Q 036345 535 EKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKL 614 (954)
Q Consensus 535 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L 614 (954)
.++.||++.+|.+..+...+..++.||++.+..|.- . -.+ +|..+-.+..|.+|||++| .+.+.|..+.+-
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~L-K-nsG-iP~diF~l~dLt~lDLShN------qL~EvP~~LE~A 125 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNL-K-NSG-IPTDIFRLKDLTILDLSHN------QLREVPTNLEYA 125 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccc-c-cCC-CCchhcccccceeeecchh------hhhhcchhhhhh
Confidence 445555665555555555555556666665555531 0 112 3333445566666666665 555566666666
Q ss_pred CcCceeeccCcccccccccc-cCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCc
Q 036345 615 KHLRFLKLSQVDLEELPETC-CELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRE 693 (954)
Q Consensus 615 ~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 693 (954)
+++-.|+||+|.|..+|.++ -+|..|-+|||++|. +..+|+.+..|.+|+.|.+++|+..
T Consensus 126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~------------------ 186 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLN------------------ 186 (1255)
T ss_pred cCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhh------------------
Confidence 66666666666666665553 355555666666555 5666666666666666666655432
Q ss_pred eEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCC
Q 036345 694 LVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRP 773 (954)
Q Consensus 694 ~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~ 773 (954)
...++.|++++.|. .+.+++ ....-......+..+.||..++++.|... .+++++..
T Consensus 187 ------hfQLrQLPsmtsL~-vLhms~---TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-------------~vPecly~ 243 (1255)
T KOG0444|consen 187 ------HFQLRQLPSMTSLS-VLHMSN---TQRTLDNIPTSLDDLHNLRDVDLSENNLP-------------IVPECLYK 243 (1255)
T ss_pred ------HHHHhcCccchhhh-hhhccc---ccchhhcCCCchhhhhhhhhccccccCCC-------------cchHHHhh
Confidence 22233333333222 111111 11111122334556677777777777543 25566677
Q ss_pred CCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCc
Q 036345 774 NPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSA 853 (954)
Q Consensus 774 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 853 (954)
+++|+.|++++|.++. +.-..+...+|++|+|+.|++...+..+.+|+.|+.|.+.+|. +. |-|..
T Consensus 244 l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L~-----FeGiP------- 309 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-LT-----FEGIP------- 309 (1255)
T ss_pred hhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-cc-----ccCCc-------
Confidence 7778888888887776 5555556677888888887766555557777888888777766 21 11111
Q ss_pred CCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCcchh
Q 036345 854 TSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCPIVK 928 (954)
Q Consensus 854 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 928 (954)
++.+.+.+|+.+...+.. ++- .|+++..++.|+.|.+..| .|..+|+++.-++.|+.|++++||++.
T Consensus 310 --SGIGKL~~Levf~aanN~-LEl----VPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 310 --SGIGKLIQLEVFHAANNK-LEL----VPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred --cchhhhhhhHHHHhhccc-ccc----CchhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCcc
Confidence 112244555555554321 221 2466677788888888555 477788877777888888888887653
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=3.7e-23 Score=219.75 Aligned_cols=321 Identities=23% Similarity=0.291 Sum_probs=245.5
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
...++.|.+....+..+|..+..+.+|+.|.+.+|. +.. +...++.++.||.+++..|... -..+|..|-.
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~----L~~-vhGELs~Lp~LRsv~~R~N~LK----nsGiP~diF~ 101 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ----LIS-VHGELSDLPRLRSVIVRDNNLK----NSGIPTDIFR 101 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh----hHh-hhhhhccchhhHHHhhhccccc----cCCCCchhcc
Confidence 345677777777777788888888888888887775 222 2233577788888888877321 1347888888
Q ss_pred cCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccc-cCCCCCCEEeccCccccccCCCCCCCCCCCCccC
Q 036345 614 LKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGI-GKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLR 692 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 692 (954)
|..|..||||+|.+++.|..+...+|+-.|+|++|+ +..+|..+ .+|..|-.|++++| .+..+|+.+..|..||+|.
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhh
Confidence 888888888888888888888888888888888877 88888664 47888888888877 4678888888888888874
Q ss_pred ceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCC
Q 036345 693 ELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALR 772 (954)
Q Consensus 693 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~ 772 (954)
+.. +.+.......+-.++.|+.|.++... .....++.++.
T Consensus 180 Ls~-----------------------------NPL~hfQLrQLPsmtsL~vLhms~Tq-----------RTl~N~Ptsld 219 (1255)
T KOG0444|consen 180 LSN-----------------------------NPLNHFQLRQLPSMTSLSVLHMSNTQ-----------RTLDNIPTSLD 219 (1255)
T ss_pred cCC-----------------------------ChhhHHHHhcCccchhhhhhhccccc-----------chhhcCCCchh
Confidence 321 11111222234456677788887653 34455777888
Q ss_pred CCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCC
Q 036345 773 PNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTS 852 (954)
Q Consensus 773 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 852 (954)
.+.+|..++++.|.... +|..+..+++|+.|+|++|.+.+.--..+...+|+.|+++.|. +..+|..+.
T Consensus 220 ~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avc--------- 288 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVC--------- 288 (1255)
T ss_pred hhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHHh---------
Confidence 88999999999999887 8999999999999999999988776677888999999999998 777776543
Q ss_pred cCCcccccCcccceeecccccccccccc-ccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCcchh
Q 036345 853 ATSSVNVAFRKLKELAFWGLYEWEEWDF-GEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCPIVK 928 (954)
Q Consensus 853 ~~~~~~~~f~~L~~L~l~~~~~l~~~~~-~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 928 (954)
.+++|+.|.+.+.. +.+ ..|.+++.+-+|+.+...+| +|+-+|.++..|+.|+.|.+..|..++
T Consensus 289 -------KL~kL~kLy~n~Nk----L~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 289 -------KLTKLTKLYANNNK----LTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred -------hhHHHHHHHhccCc----ccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccceee
Confidence 57888888776532 333 24677889999999999998 699999999999999999999998654
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=2.4e-19 Score=225.54 Aligned_cols=318 Identities=22% Similarity=0.242 Sum_probs=231.3
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
+.++|.|.+..+.+..+|..+ ...+|+.|++.++. +.. ++..+..+++|+.|+|+++. .+..+|+ ++.
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~----l~~-L~~~~~~l~~Lk~L~Ls~~~-----~l~~ip~-ls~ 655 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK----LEK-LWDGVHSLTGLRNIDLRGSK-----NLKEIPD-LSM 655 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc----ccc-cccccccCCCCCEEECCCCC-----CcCcCCc-ccc
Confidence 456888888888777777776 56889999998875 332 45556889999999999873 4677775 889
Q ss_pred cCcCceeeccCcc-cccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccC
Q 036345 614 LKHLRFLKLSQVD-LEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLR 692 (954)
Q Consensus 614 L~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 692 (954)
+++|++|+|++|. +..+|.+++++++|+.|++++|..+..+|..+ ++++|++|++++|..+..+|... ++|+.|.
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~---~nL~~L~ 731 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIS---TNISWLD 731 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccccc---CCcCeee
Confidence 9999999999876 77999999999999999999999999999877 79999999999998877777543 4566665
Q ss_pred ceEecCCcc-CcccccccccCCceeEEcCCCCCCC---ccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHh
Q 036345 693 ELVVSRKGC-NLGGLRHLNHLRGSFRIRGLGNVTH---VDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATS 768 (954)
Q Consensus 693 ~~~~~~~~~-~l~~l~~L~~L~~~l~i~~l~~~~~---~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 768 (954)
+..+..... ....+.+|.. +.+..+..... ............++|+.|+|+.|.... .++
T Consensus 732 L~~n~i~~lP~~~~l~~L~~----L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~------------~lP 795 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDE----LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV------------ELP 795 (1153)
T ss_pred cCCCcccccccccccccccc----ccccccchhhccccccccchhhhhccccchheeCCCCCCcc------------ccC
Confidence 433322100 0001222221 22211110000 000000011234789999998875332 245
Q ss_pred hcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCC
Q 036345 769 EALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGD 848 (954)
Q Consensus 769 ~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 848 (954)
..+..+++|+.|+|++|.....+|..+ .+++|+.|+|++|.....+|.+ .++|+.|+|++|. ++.+|..+
T Consensus 796 ~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~si------ 865 (1153)
T PLN03210 796 SSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPWWI------ 865 (1153)
T ss_pred hhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChHHH------
Confidence 567788999999999987666688776 7899999999999887776654 4789999999886 66666432
Q ss_pred CCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCC
Q 036345 849 NGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLP 907 (954)
Q Consensus 849 ~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp 907 (954)
..+++|+.|.+.+|.++..++.. ...+++|+.|++++|++|..++
T Consensus 866 ----------~~l~~L~~L~L~~C~~L~~l~~~----~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 866 ----------EKFSNLSFLDMNGCNNLQRVSLN----ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ----------hcCCCCCEEECCCCCCcCccCcc----cccccCCCeeecCCCccccccc
Confidence 26899999999999999887654 4578999999999999887654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=8.3e-21 Score=201.10 Aligned_cols=152 Identities=23% Similarity=0.243 Sum_probs=87.5
Q ss_pred CCceEEEEEEeccccC-CcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccc-hhh
Q 036345 534 KEKLYHLMLMINLFST-FPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIP-KEI 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i 611 (954)
+...+.|++++|.+.. -+..+.++++|+.+.+..|. +. .+|.+.....+|..|+|.+| .|..+. +++
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~----Lt-~IP~f~~~sghl~~L~L~~N------~I~sv~se~L 145 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE----LT-RIPRFGHESGHLEKLDLRHN------LISSVTSEEL 145 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccch----hh-hcccccccccceeEEeeecc------ccccccHHHH
Confidence 4556667777776655 24456677777777776664 32 24554444556677777666 444442 346
Q ss_pred hccCcCceeeccCccccccccc-ccCCCCccEEeccccCCCcccc-ccccCCCCCCEEeccCccccccCC-CCCCCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLEELPET-CCELVNLQTLDIEACGSLKRLP-QGIGKLVNLRHLMISHNVYLDYMP-KGIERLTCL 688 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L 688 (954)
..++.||.||||.|.|.++|.. +..=.++++|+|++|. +..+- ..+..+.+|-.|.++.|.. +.+| ..+.+|..|
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKL 223 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcc-cccCHHHhhhcchh
Confidence 6666677777776666666543 3344566666666665 44333 2355566666666666643 3444 334556666
Q ss_pred CccCceEecC
Q 036345 689 RTLRELVVSR 698 (954)
Q Consensus 689 ~~L~~~~~~~ 698 (954)
+.|.+-.+..
T Consensus 224 ~~LdLnrN~i 233 (873)
T KOG4194|consen 224 ESLDLNRNRI 233 (873)
T ss_pred hhhhccccce
Confidence 6665555443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=7.6e-22 Score=200.08 Aligned_cols=151 Identities=29% Similarity=0.369 Sum_probs=120.0
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
...+..+.+++|....+|..+..+..+..++++++. +.. +|..+.....|+.|+++++ .+.++|++|+.
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~----ls~-lp~~i~s~~~l~~l~~s~n------~~~el~~~i~~ 135 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK----LSE-LPEQIGSLISLVKLDCSSN------ELKELPDSIGR 135 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch----Hhh-ccHHHhhhhhhhhhhcccc------ceeecCchHHH
Confidence 344667788888888888888888888888888876 333 5666778888888888888 77888888888
Q ss_pred cCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCc
Q 036345 614 LKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRE 693 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 693 (954)
+..|..|+..+|.+..+|+.++++.+|..|++.+++ +..+|+..-.|+.|+||+...| .++.+|+.++.|.+|..|++
T Consensus 136 ~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 136 LLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYL 213 (565)
T ss_pred HhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHh
Confidence 888888888888888888888888888888888877 7777777666888888888766 56788888888888777765
Q ss_pred eEec
Q 036345 694 LVVS 697 (954)
Q Consensus 694 ~~~~ 697 (954)
-.+.
T Consensus 214 ~~Nk 217 (565)
T KOG0472|consen 214 RRNK 217 (565)
T ss_pred hhcc
Confidence 5443
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=6e-20 Score=194.68 Aligned_cols=339 Identities=18% Similarity=0.183 Sum_probs=234.6
Q ss_pred CCCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-hh
Q 036345 533 SKEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-EI 611 (954)
Q Consensus 533 ~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i 611 (954)
..+++..+++..|.++.+|.......+|+.|++.+|. +..+-.+.++-++.||+|||+.| .|.++|. ++
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~----I~sv~se~L~~l~alrslDLSrN------~is~i~~~sf 169 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL----ISSVTSEELSALPALRSLDLSRN------LISEIPKPSF 169 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccc----cccccHHHHHhHhhhhhhhhhhc------hhhcccCCCC
Confidence 3678889999999999889888888889999999986 55556667888999999999999 7777764 36
Q ss_pred hccCcCceeeccCccccccc-ccccCCCCccEEeccccCCCcccccc-ccCCCCCCEEeccCccccccC-CCCCCCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLEELP-ETCCELVNLQTLDIEACGSLKRLPQG-IGKLVNLRHLMISHNVYLDYM-PKGIERLTCL 688 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~-p~~i~~L~~L 688 (954)
..-.++++|+|++|+|+.+- ..+..|.+|-+|.|+.|. ++.+|.- +.+|++|+.|++..|.. ..+ -..+..|.+|
T Consensus 170 p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl 247 (873)
T KOG4194|consen 170 PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQGLPSL 247 (873)
T ss_pred CCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccce-eeehhhhhcCchhh
Confidence 67788999999999999774 457888899999999988 8888865 55699999999988743 322 1246778888
Q ss_pred CccCceEecCC---ccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHH
Q 036345 689 RTLRELVVSRK---GCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHE 765 (954)
Q Consensus 689 ~~L~~~~~~~~---~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 765 (954)
+.|.+-.++.. ...+=.+.++..+. +.. +.+.......+..+..|+.|++++|.....
T Consensus 248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~--L~~------N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri----------- 308 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGAFYGLEKMEHLN--LET------NRLQAVNEGWLFGLTSLEQLDLSYNAIQRI----------- 308 (873)
T ss_pred hhhhhhhcCcccccCcceeeecccceee--ccc------chhhhhhcccccccchhhhhccchhhhhee-----------
Confidence 88866555432 11111122222110 111 122223334566778888888888764322
Q ss_pred HHhhcCCCCCCCCEEEEeeecCCCCCCc-chhcccCccEEEEeCcCCCCcCC-CCCCCCCCceEeecCCCCceEeCcccc
Q 036345 766 ATSEALRPNPNIEVLKIFQYKGKTVFPS-WIMSLCKLKVLLLSFCIKCEIMP-PLGKLPSLEVLSIWNMNSVKTVGDEFL 843 (954)
Q Consensus 766 ~~~~~l~~~~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~c~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~ 843 (954)
-.+++..+++|+.|+++.|.+.. +++ .+..+..|+.|.|+.|.+...-. .+..+.+|+.|+|++|. +...-++--
T Consensus 309 -h~d~WsftqkL~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa 385 (873)
T KOG4194|consen 309 -HIDSWSFTQKLKELDLSSNRITR-LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAA 385 (873)
T ss_pred -ecchhhhcccceeEecccccccc-CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecch
Confidence 24456677888888888888877 544 45577888888888886543221 25678888888888887 433322210
Q ss_pred cCCCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEEEe
Q 036345 844 GIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIK 922 (954)
Q Consensus 844 ~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 922 (954)
. ...++++|+.|.|.|.. ++.++.. .+..+++|+.|++.+|.--..-|..+.++ .|++|.+.
T Consensus 386 ~------------~f~gl~~LrkL~l~gNq-lk~I~kr---Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 386 V------------AFNGLPSLRKLRLTGNQ-LKSIPKR---AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred h------------hhccchhhhheeecCce-eeecchh---hhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 0 12368888888888753 5665543 34568889999998886444445666666 88888664
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=6.2e-19 Score=197.39 Aligned_cols=261 Identities=24% Similarity=0.262 Sum_probs=120.8
Q ss_pred eEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCc
Q 036345 537 LYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKH 616 (954)
Q Consensus 537 lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~ 616 (954)
+.+|++++|.+..+|..+..+.+|+.|.++.|. +.. .|....+++.|++|.|.+| .+..+|.++..+++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~----i~~-vp~s~~~~~~l~~lnL~~n------~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY----IRS-VPSSCSNMRNLQYLNLKNN------RLQSLPASISELKN 115 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhh----Hhh-Cchhhhhhhcchhheeccc------hhhcCchhHHhhhc
Confidence 445555555555555555555555555555443 221 3333444555555555554 44445555555555
Q ss_pred CceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceEe
Q 036345 617 LRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVV 696 (954)
Q Consensus 617 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 696 (954)
|+||+++.|.+..+|.-+..+..++.+..++|..+..++. +. ++++++..+.....++.+++.++. +|++-++
T Consensus 116 l~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N 188 (1081)
T KOG0618|consen 116 LQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYN 188 (1081)
T ss_pred ccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcchhhhhe--eeecccc
Confidence 5555555555555555555555555555554432222222 11 444444444444445545555444 2333222
Q ss_pred cCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCC
Q 036345 697 SRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPN 776 (954)
Q Consensus 697 ~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 776 (954)
......+.++.+|+.+... ...+.. .-...++|+.|....|..+.. ..-.-+.+
T Consensus 189 ~~~~~dls~~~~l~~l~c~-----rn~ls~-------l~~~g~~l~~L~a~~n~l~~~--------------~~~p~p~n 242 (1081)
T KOG0618|consen 189 EMEVLDLSNLANLEVLHCE-----RNQLSE-------LEISGPSLTALYADHNPLTTL--------------DVHPVPLN 242 (1081)
T ss_pred hhhhhhhhhccchhhhhhh-----hcccce-------EEecCcchheeeeccCcceee--------------cccccccc
Confidence 2221222222222211100 000000 001223444444444432211 11122345
Q ss_pred CCEEEEeeecCCCCCCcchhcccCccEEEEeCc-----------------------CCCCcCCCCCCCCCCceEeecCCC
Q 036345 777 IEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFC-----------------------IKCEIMPPLGKLPSLEVLSIWNMN 833 (954)
Q Consensus 777 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c-----------------------~~~~~l~~l~~l~~L~~L~L~~~~ 833 (954)
|++++++.+.... +|+|++.+.+|+.|.+..| ......|.+..+.+|++|+|..|.
T Consensus 243 l~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 243 LQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred ceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 5555555555555 5555555555555555554 333344456678999999999988
Q ss_pred CceEeCcccc
Q 036345 834 SVKTVGDEFL 843 (954)
Q Consensus 834 ~l~~~~~~~~ 843 (954)
+..+|+.++
T Consensus 322 -L~~lp~~~l 330 (1081)
T KOG0618|consen 322 -LPSLPDNFL 330 (1081)
T ss_pred -ccccchHHH
Confidence 777776443
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=5.6e-20 Score=186.64 Aligned_cols=350 Identities=23% Similarity=0.247 Sum_probs=236.8
Q ss_pred ceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccC
Q 036345 536 KLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLK 615 (954)
Q Consensus 536 ~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~ 615 (954)
.+..+.+++|.+..+...+.++..|.+|.+.++. ... +|..++.+..+..|+.+.+ .+..+|..++.+.
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~----l~~-lp~aig~l~~l~~l~vs~n------~ls~lp~~i~s~~ 114 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNK----LSQ-LPAAIGELEALKSLNVSHN------KLSELPEQIGSLI 114 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccch----hhh-CCHHHHHHHHHHHhhcccc------hHhhccHHHhhhh
Confidence 4456677778777777778889999999999986 333 5666888889999999999 8889999999999
Q ss_pred cCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceE
Q 036345 616 HLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELV 695 (954)
Q Consensus 616 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 695 (954)
.|+.|++++|.+.++|++++.+..|+.|+..+|+ +..+|.++.++.+|..|++.+|.. ..+|+..-.++.|++|++..
T Consensus 115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccch
Confidence 9999999999999999999999999999999887 889999999999999999998854 66676665688888887654
Q ss_pred ecCC--ccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCC
Q 036345 696 VSRK--GCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRP 773 (954)
Q Consensus 696 ~~~~--~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~ 773 (954)
+... ...+..+.+|.-+. .. .........+..|+.|.+|+...|... ..-.+.+..
T Consensus 193 N~L~tlP~~lg~l~~L~~Ly----L~------~Nki~~lPef~gcs~L~Elh~g~N~i~------------~lpae~~~~ 250 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLY----LR------RNKIRFLPEFPGCSLLKELHVGENQIE------------MLPAEHLKH 250 (565)
T ss_pred hhhhcCChhhcchhhhHHHH----hh------hcccccCCCCCccHHHHHHHhcccHHH------------hhHHHHhcc
Confidence 4322 22233333322110 00 000011113345556666666554321 111233456
Q ss_pred CCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCC-------
Q 036345 774 NPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIG------- 846 (954)
Q Consensus 774 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~------- 846 (954)
+++|..|++..|.+.+ .|..+.-+.+|..|++++|.+....+.+|++ +|+.|.+.||+ ++++-.++...+
T Consensus 251 L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 251 LNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKY 327 (565)
T ss_pred cccceeeecccccccc-CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHH
Confidence 7788888888888877 8888888888888888888887777778888 88888888887 443322111100
Q ss_pred -----------CC--CCCCcCCcccccCc------ccceeecccccccccccc---------------------------
Q 036345 847 -----------GD--NGTSATSSVNVAFR------KLKELAFWGLYEWEEWDF--------------------------- 880 (954)
Q Consensus 847 -----------~~--~~~~~~~~~~~~f~------~L~~L~l~~~~~l~~~~~--------------------------- 880 (954)
.. ...+........|| +.+.|.+++.. ++.++.
T Consensus 328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~ 406 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKR 406 (565)
T ss_pred HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccchHhhhhhh
Confidence 00 00000000111222 23444433321 121110
Q ss_pred -------------------ccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCc
Q 036345 881 -------------------GEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCP 925 (954)
Q Consensus 881 -------------------~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 925 (954)
..+..+..+++|..|+++++. +..+|..++.+..|+.|+|+.|.
T Consensus 407 L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 407 LVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred hHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheecccccc
Confidence 012334678999999999985 89999988888899999999884
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=5e-18 Score=190.23 Aligned_cols=269 Identities=25% Similarity=0.258 Sum_probs=145.3
Q ss_pred EEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCcee
Q 036345 541 MLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFL 620 (954)
Q Consensus 541 ~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L 620 (954)
+.++..++-+|..+.....+..|.+..|. +....-++..+.-+|++|++++| .+..+|..|..+.+|+.|
T Consensus 4 d~s~~~l~~ip~~i~~~~~~~~ln~~~N~----~l~~pl~~~~~~v~L~~l~lsnn------~~~~fp~~it~l~~L~~l 73 (1081)
T KOG0618|consen 4 DASDEQLELIPEQILNNEALQILNLRRNS----LLSRPLEFVEKRVKLKSLDLSNN------QISSFPIQITLLSHLRQL 73 (1081)
T ss_pred ccccccCcccchhhccHHHHHhhhccccc----cccCchHHhhheeeeEEeecccc------ccccCCchhhhHHHHhhc
Confidence 33444444455555555556666666654 11111122333444777777776 556666667777777777
Q ss_pred eccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceEecCCc
Q 036345 621 KLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKG 700 (954)
Q Consensus 621 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~ 700 (954)
++++|.|...|.++.++.+|++|.|.++. +..+|.++..+++|+.|++++|.+ ..+|..+..++.+..+...++ ...
T Consensus 74 n~s~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N-~~~ 150 (1081)
T KOG0618|consen 74 NLSRNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNN-EKI 150 (1081)
T ss_pred ccchhhHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcc-hhh
Confidence 77777777777777777777777776655 666777777777777777776643 455555555555444433322 000
Q ss_pred cCccc--ccc----cccCCcee--EEcCCCC---CCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhh
Q 036345 701 CNLGG--LRH----LNHLRGSF--RIRGLGN---VTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSE 769 (954)
Q Consensus 701 ~~l~~--l~~----L~~L~~~l--~i~~l~~---~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 769 (954)
..+.. .++ ++.+.+.+ .+..+.. +.+.... ...+..+.+|+.|....|.....
T Consensus 151 ~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~~dls~~~~l~~l~c~rn~ls~l--------------- 214 (1081)
T KOG0618|consen 151 QRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-VLDLSNLANLEVLHCERNQLSEL--------------- 214 (1081)
T ss_pred hhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh-hhhhhhccchhhhhhhhcccceE---------------
Confidence 00000 000 01111110 0001100 0111111 22344455555555544432211
Q ss_pred cCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCccc
Q 036345 770 ALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEF 842 (954)
Q Consensus 770 ~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~ 842 (954)
--.-++|+.|....|......+. ....+|++++++.+.+......++.+++|+.|.+..|. +..+|.+.
T Consensus 215 -~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri 283 (1081)
T KOG0618|consen 215 -EISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRI 283 (1081)
T ss_pred -EecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHH
Confidence 11235777777777776542221 24569999999999877666668889999999988887 45555443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=1.7e-14 Score=168.04 Aligned_cols=116 Identities=27% Similarity=0.302 Sum_probs=78.8
Q ss_pred EEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcC
Q 036345 538 YHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHL 617 (954)
Q Consensus 538 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L 617 (954)
..|+++.+.+..+|..+. ++|+.|.+.+|. +.. +|. ..++|++|+|++| .+..+|.. .++|
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~----Lt~-LP~---lp~~Lk~LdLs~N------~LtsLP~l---p~sL 264 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNN----LTS-LPA---LPPELRTLEVSGN------QLTSLPVL---PPGL 264 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCc----CCC-CCC---CCCCCcEEEecCC------ccCcccCc---cccc
Confidence 356777777777776654 478888888775 332 332 2467888888888 66667643 3577
Q ss_pred ceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCC
Q 036345 618 RFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPK 680 (954)
Q Consensus 618 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~ 680 (954)
+.|++++|.+..+|.. +.+|+.|++++|. +..+|.. +++|++|++++|. +..+|.
T Consensus 265 ~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~ 319 (788)
T PRK15387 265 LELSIFSNPLTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA 319 (788)
T ss_pred ceeeccCCchhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCc-cccCCC
Confidence 8888888888877753 3567788888876 7777753 4678888888774 344554
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=4e-14 Score=166.29 Aligned_cols=115 Identities=28% Similarity=0.384 Sum_probs=74.1
Q ss_pred ceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccC
Q 036345 536 KLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLK 615 (954)
Q Consensus 536 ~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~ 615 (954)
+...+.+..+.+..+|..+ .++|+.|++++|. +.. +|..+ +++|+.|++++| .+..+|..+. .
T Consensus 179 ~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~----Lts-LP~~l--~~nL~~L~Ls~N------~LtsLP~~l~--~ 241 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI--PEQITTLILDNNE----LKS-LPENL--QGNIKTLYANSN------QLTSIPATLP--D 241 (754)
T ss_pred CceEEEeCCCCcCcCCccc--ccCCcEEEecCCC----CCc-CChhh--ccCCCEEECCCC------ccccCChhhh--c
Confidence 4456677776666666544 2467777777775 332 33322 246777777777 5666666543 3
Q ss_pred cCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCc
Q 036345 616 HLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHN 672 (954)
Q Consensus 616 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 672 (954)
+|+.|+|++|.+..+|..+. .+|++|++++|. +..+|..+. ++|++|++++|
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 242 TIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred cccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC
Confidence 67777777777777776654 467777777665 666776553 46777777766
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.48 E-value=1.2e-14 Score=173.24 Aligned_cols=322 Identities=25% Similarity=0.287 Sum_probs=203.2
Q ss_pred cccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-hhccCcCceeeccCcc-cccccc
Q 036345 555 RYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-IEKLKHLRFLKLSQVD-LEELPE 632 (954)
Q Consensus 555 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~L~~L~L~~~~-i~~lp~ 632 (954)
......|.+.+.++. +.. .+. -..++.|++|-+.++.. .+..++.. |..+++|++|||++|. +.+||.
T Consensus 520 ~~~~~~rr~s~~~~~----~~~-~~~-~~~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNK----IEH-IAG-SSENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred cchhheeEEEEeccc----hhh-ccC-CCCCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 344677888777765 111 122 13455799999998821 14556544 7789999999999876 789999
Q ss_pred cccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceEec--CCccCcccccccc
Q 036345 633 TCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVVS--RKGCNLGGLRHLN 710 (954)
Q Consensus 633 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~--~~~~~l~~l~~L~ 710 (954)
+|+.|.+|++|+++++. +..+|.++.+|++|.+|++..+..+..+|..+..|++|++|.++... .....+.++.+|.
T Consensus 590 ~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred HHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 99999999999999988 89999999999999999999887776776666679999999877754 2255666666666
Q ss_pred cCCceeEEcCCCCCCCccccccccCccCCCCceE----EEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeec
Q 036345 711 HLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCL----ELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYK 786 (954)
Q Consensus 711 ~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L----~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 786 (954)
+|. .+.+..... .....+..+..|.++ .+.++. .......+..+.+|+.|.+.+|.
T Consensus 669 ~L~-~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~~-------------~~~~~~~~~~l~~L~~L~i~~~~ 728 (889)
T KOG4658|consen 669 HLE-NLSITISSV------LLLEDLLGMTRLRSLLQSLSIEGCS-------------KRTLISSLGSLGNLEELSILDCG 728 (889)
T ss_pred chh-hheeecchh------HhHhhhhhhHHHHHHhHhhhhcccc-------------cceeecccccccCcceEEEEcCC
Confidence 555 333321111 000011122222211 111111 11233445667788888888887
Q ss_pred CCCCCCcchh-----c-ccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCccccc
Q 036345 787 GKTVFPSWIM-----S-LCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVA 860 (954)
Q Consensus 787 ~~~~lp~~~~-----~-l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (954)
+......|.. . ++++..+.+.+|.....+.+....|+|+.|.+..|..++.+....-..... ......
T Consensus 729 ~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l------~~~i~~ 802 (889)
T KOG4658|consen 729 ISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL------KELILP 802 (889)
T ss_pred CchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhc------ccEEec
Confidence 7652222322 2 556777777777766666666677888888888888666554322111100 001235
Q ss_pred Cccccee-eccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecC
Q 036345 861 FRKLKEL-AFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKC 924 (954)
Q Consensus 861 f~~L~~L-~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 924 (954)
|+++..+ .+.+.+.+.++... ...+++|+.+.+..||++..+|. +.++.+.+|
T Consensus 803 f~~~~~l~~~~~l~~l~~i~~~----~l~~~~l~~~~ve~~p~l~~~P~-------~~~~~i~~~ 856 (889)
T KOG4658|consen 803 FNKLEGLRMLCSLGGLPQLYWL----PLSFLKLEELIVEECPKLGKLPL-------LSTLTIVGC 856 (889)
T ss_pred ccccccceeeecCCCCceeEec----ccCccchhheehhcCcccccCcc-------ccccceecc
Confidence 6666666 45555555555433 12466688888888887776663 445566665
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.44 E-value=1.7e-11 Score=154.23 Aligned_cols=293 Identities=18% Similarity=0.215 Sum_probs=181.8
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeC-CCCCHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVS-DPFDEFRVARA 249 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~ 249 (954)
.+.++-|++-.+. |.. ....+++.|.|++|.||||++..+... ++.++|+++. .+.+...+...
T Consensus 13 ~~~~~~R~rl~~~----l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRERLLAK----LSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchHHHHH----Hhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 3456666644444 432 125679999999999999999998752 2368999986 44566777788
Q ss_pred HHHHhhcCCCC-------------cccHHHHHHHHHHHhc--CceeEEEecCCCCCCccChhh-HHhhhcCCCCCcEEEE
Q 036345 250 IIEALEGSASN-------------LGELQSLLQRIQTSIA--GKKFLLVLDDMWTDDYSKWEP-FNNCLMNGLRGSKILV 313 (954)
Q Consensus 250 i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~~-l~~~l~~~~~gs~iii 313 (954)
++..+...... ..+.......+...+. +.+++|||||+...+...... +...++....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 88777522111 0122333333433332 678999999997654344443 4444444556778989
Q ss_pred ecCchh---HHhhhcCcceEeCC----CCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhhc
Q 036345 314 TTRKKT---VAQMMESTDVFSIK----ELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLLR 386 (954)
Q Consensus 314 Ttr~~~---v~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 386 (954)
|||... ...........++. +|+.+|+.++|........ . .+...+|.+.|+|.|+++..++..+.
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~----~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E----AAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C----HHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999842 11111112345555 9999999999987543211 1 34456799999999999998887665
Q ss_pred CCCC-HHHHHHHHhhhhhccccc-ccchhhHHH-hhhcCCChhhhhHHhHhcCCCCCcccchHHHHHHHHHhcccCCCCC
Q 036345 387 FKKT-REEWQRILDSEMWKLKEF-EKGLLAPLL-LSYNDLPTMVKRCFSYCAVFPKDYNIEKDELIKVWMAQGYIGPKEN 463 (954)
Q Consensus 387 ~~~~-~~~w~~~l~~~~~~~~~~-~~~i~~~l~-~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~ 463 (954)
.... .... .+.+... ...+...+. -.|+.||+..+..+...|+++ .++.+ +. ..+.+.
T Consensus 231 ~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~-----~~l~~~--- 291 (903)
T PRK04841 231 QNNSSLHDS-------ARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LI-----VRVTGE--- 291 (903)
T ss_pred hCCCchhhh-------hHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HH-----HHHcCC---
Confidence 3321 1110 0111111 123444443 347899999999999999997 33322 22 222221
Q ss_pred chHHHHHHHHHHHHHhcCCceeeeccCCCcEEEEeechhHHHHHHHhh
Q 036345 464 EEMEIIGQEYFDYLATRSFFQEFEKDEEGFVIRCKMHDIVHDFAQFLT 511 (954)
Q Consensus 464 ~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdli~dl~~~~~ 511 (954)
+.+...+++|.+.+++...... .+ ..|+.|++++++.....
T Consensus 292 ----~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ----ENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred ----CcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 1246778999999997543222 12 25778999999997654
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=1.4e-13 Score=161.90 Aligned_cols=225 Identities=20% Similarity=0.304 Sum_probs=148.7
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
+..++.|++++|.+..+|..+. ++|++|++++|. +.. +|..+ ...|+.|+|++| .+..+|..+.
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~----Lts-LP~~l--~~~L~~L~Ls~N------~L~~LP~~l~- 261 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ----LTS-IPATL--PDTIQEMELSIN------RITELPERLP- 261 (754)
T ss_pred ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc----ccc-CChhh--hccccEEECcCC------ccCcCChhHh-
Confidence 5678999999999998887654 699999999986 333 34433 347999999999 7888888765
Q ss_pred cCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCc
Q 036345 614 LKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRE 693 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 693 (954)
.+|++|++++|.+..+|..+. .+|++|++++|. +..+|..+. .+|++|++++|. +..+|..+. ++|+.|.+
T Consensus 262 -s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~L 332 (754)
T PRK15370 262 -SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNS-LTALPETLP--PGLKTLEA 332 (754)
T ss_pred -CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCc-cccCCcccc--ccceeccc
Confidence 589999999999999998765 589999999997 888887654 578999999875 355665332 34444432
Q ss_pred eEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCC
Q 036345 694 LVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRP 773 (954)
Q Consensus 694 ~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~ 773 (954)
..+. ++.+. . .+ .++|+.|++++|.+.. ++..+
T Consensus 333 s~N~-----------Lt~LP---------------~----~l--~~sL~~L~Ls~N~L~~-------------LP~~l-- 365 (754)
T PRK15370 333 GENA-----------LTSLP---------------A----SL--PPELQVLDVSKNQITV-------------LPETL-- 365 (754)
T ss_pred cCCc-----------cccCC---------------h----hh--cCcccEEECCCCCCCc-------------CChhh--
Confidence 1110 00000 0 00 2467777777665431 11111
Q ss_pred CCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCC----CCCCCCCceEeecCCC
Q 036345 774 NPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPP----LGKLPSLEVLSIWNMN 833 (954)
Q Consensus 774 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~----l~~l~~L~~L~L~~~~ 833 (954)
+++|++|+|++|.+.. +|..+. .+|+.|++++|.+...... ++.+|++..|++.+|+
T Consensus 366 p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 366 PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 2467777777776665 666543 3566777777665432111 2344666677776665
No 20
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.43 E-value=7.5e-11 Score=132.82 Aligned_cols=323 Identities=13% Similarity=0.086 Sum_probs=189.1
Q ss_pred ccCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 169 INVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
..++.++||++++++|...+..... ......+.|+|++|+|||++++.++++.......-..+++++....+...++.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3457799999999999999855422 22344578999999999999999998532222123466777777778889999
Q ss_pred HHHHHhhcC-C-CCcccHHHHHHHHHHHhc--CceeEEEecCCCCCC-ccChhhHHhhhc--CCCCCc--EEEEecCchh
Q 036345 249 AIIEALEGS-A-SNLGELQSLLQRIQTSIA--GKKFLLVLDDMWTDD-YSKWEPFNNCLM--NGLRGS--KILVTTRKKT 319 (954)
Q Consensus 249 ~i~~~l~~~-~-~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~-~~~~~~l~~~l~--~~~~gs--~iiiTtr~~~ 319 (954)
.|++++... . ....+.++....+.+.+. ++..+||||+++.-. ....+.+...+. ....++ .+|.++....
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 999999752 1 122345666777777764 456899999996532 112223333222 112233 3566655543
Q ss_pred HHhhhc-------CcceEeCCCCCHHHHHHHHHHHHcCCC--CCCCchhHHHHHHHHHHhcCCChHHHHHHHhhh--c--
Q 036345 320 VAQMME-------STDVFSIKELSKQECWSLFKRFAFFGR--HPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLL--R-- 386 (954)
Q Consensus 320 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l--~-- 386 (954)
+..... ....+.+.+++.++..+++..++.... ..-.+..++.+++......|..+.|+..+-... .
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 322211 124679999999999999998763221 112223344444444444566777776654322 1
Q ss_pred CC---CCHHHHHHHHhhhhhcccccccchhhHHHhhhcCCChhhhhHHhHhcCCCC--CcccchHHHHHH--HHHhcccC
Q 036345 387 FK---KTREEWQRILDSEMWKLKEFEKGLLAPLLLSYNDLPTMVKRCFSYCAVFPK--DYNIEKDELIKV--WMAQGYIG 459 (954)
Q Consensus 387 ~~---~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~--~~~i~~~~li~~--w~a~g~i~ 459 (954)
.+ -+.++...+.+... .....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 14555555554320 122344678999998887766653321 133555555432 23322211
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCceeeec--cCCCcEEEEeechhHHHH
Q 036345 460 PKENEEMEIIGQEYFDYLATRSFFQEFEK--DEEGFVIRCKMHDIVHDF 506 (954)
Q Consensus 460 ~~~~~~~e~~~~~~~~~L~~~~ll~~~~~--~~~~~~~~~~mHdli~dl 506 (954)
. ..+ ......|++.|...+++..... +..|..+.++++.-.-++
T Consensus 335 ~--~~~-~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~~~~~~ 380 (394)
T PRK00411 335 E--PRT-HTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSYDPEDV 380 (394)
T ss_pred C--cCc-HHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecCCHHHH
Confidence 1 111 2334669999999999987543 335666666665433333
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=2e-14 Score=129.62 Aligned_cols=142 Identities=33% Similarity=0.418 Sum_probs=123.3
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
..++..+.+++|.++++|.+++.+++||.|++..|. + ..+|..|+.++-|.+|||.+|... =..+|..+-.
T Consensus 55 l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr----l-~~lprgfgs~p~levldltynnl~----e~~lpgnff~ 125 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR----L-NILPRGFGSFPALEVLDLTYNNLN----ENSLPGNFFY 125 (264)
T ss_pred hhhhhhhhcccchhhhcChhhhhchhhhheecchhh----h-hcCccccCCCchhhhhhccccccc----cccCCcchhH
Confidence 456788899999999999999999999999999886 2 347888999999999999998432 1347888889
Q ss_pred cCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCC
Q 036345 614 LKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLT 686 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~ 686 (954)
+..|+.|.|++|.++.+|..+++|.+||+|.++.|. +-++|..++.+..|+.|++.+|. +.-+|+.++++.
T Consensus 126 m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnr-l~vlppel~~l~ 196 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNR-LTVLPPELANLD 196 (264)
T ss_pred HHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccce-eeecChhhhhhh
Confidence 999999999999999999999999999999999988 78899999999999999999884 577888776654
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.36 E-value=4.3e-12 Score=148.25 Aligned_cols=236 Identities=21% Similarity=0.198 Sum_probs=149.6
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
+.+++.|.+..|.++.+|.. +++|++|++++|. +.. +|. ..+.|+.|++++| .+..+|..
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~----Lts-LP~---lp~sL~~L~Ls~N------~L~~Lp~l--- 280 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ----LTS-LPV---LPPGLLELSIFSN------PLTHLPAL--- 280 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc----cCc-ccC---cccccceeeccCC------chhhhhhc---
Confidence 45789999999999887753 5899999999986 333 343 2468999999999 66777653
Q ss_pred cCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCc
Q 036345 614 LKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRE 693 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 693 (954)
...|+.|+|++|.++.+|.. +++|+.|++++|. +..+|... .+|+.|++++|. +..+|... .+|+.|++
T Consensus 281 p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~lp---~~Lq~LdL 349 (788)
T PRK15387 281 PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELCKLWAYNNQ-LTSLPTLP---SGLQELSV 349 (788)
T ss_pred hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCCc---ccccccccccCc-cccccccc---cccceEec
Confidence 35688999999999999863 5789999999987 77787633 457788888874 35566421 34555433
Q ss_pred eEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCC
Q 036345 694 LVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRP 773 (954)
Q Consensus 694 ~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~ 773 (954)
..+. +..+ +. ...+|+.|.++.|.+.. ++. .
T Consensus 350 S~N~-----Ls~L---------------P~-------------lp~~L~~L~Ls~N~L~~-------------LP~---l 380 (788)
T PRK15387 350 SDNQ-----LASL---------------PT-------------LPSELYKLWAYNNRLTS-------------LPA---L 380 (788)
T ss_pred CCCc-----cCCC---------------CC-------------CCcccceehhhcccccc-------------Ccc---c
Confidence 2210 1100 00 01245555665554321 111 1
Q ss_pred CCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCc
Q 036345 774 NPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSA 853 (954)
Q Consensus 774 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 853 (954)
+++|+.|++++|.+.. +|.. .++|+.|++++|.+.. +|.+ +.+|+.|++++|. ++.+|..+.
T Consensus 381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~Nq-Lt~LP~sl~---------- 442 (788)
T PRK15387 381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQ-LTRLPESLI---------- 442 (788)
T ss_pred ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCc-ccccChHHh----------
Confidence 2467777777777665 6643 3567777777776543 3432 3456677777766 555554332
Q ss_pred CCcccccCcccceeeccccc
Q 036345 854 TSSVNVAFRKLKELAFWGLY 873 (954)
Q Consensus 854 ~~~~~~~f~~L~~L~l~~~~ 873 (954)
.+++|+.|++++++
T Consensus 443 ------~L~~L~~LdLs~N~ 456 (788)
T PRK15387 443 ------HLSSETTVNLEGNP 456 (788)
T ss_pred ------hccCCCeEECCCCC
Confidence 45666666666654
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=2.1e-14 Score=129.37 Aligned_cols=125 Identities=26% Similarity=0.396 Sum_probs=64.7
Q ss_pred cccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccccc
Q 036345 555 RYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETC 634 (954)
Q Consensus 555 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i 634 (954)
..+++++.|.+++|. +.. .|..+..+++|++|++++| .++++|.+|+.|+.|+.|+++-|++..+|..+
T Consensus 30 f~~s~ITrLtLSHNK----l~~-vppnia~l~nlevln~~nn------qie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK----LTV-VPPNIAELKNLEVLNLSNN------QIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred cchhhhhhhhcccCc----eee-cCCcHHHhhhhhhhhcccc------hhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 344455555555554 222 2222455555555555555 55555555555555555555555555555555
Q ss_pred cCCCCccEEeccccCCC-ccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCcc
Q 036345 635 CELVNLQTLDIEACGSL-KRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTL 691 (954)
Q Consensus 635 ~~L~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 691 (954)
+.++-|+.|||.+|+.- ..+|..+..|..|+-|+++.|. ...+|+.+++|++||.|
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQIL 155 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEE
Confidence 55555555555555411 1355555555555555555542 34555555555544444
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.25 E-value=4.6e-10 Score=119.31 Aligned_cols=182 Identities=16% Similarity=0.139 Sum_probs=116.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHH----HH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQ----TS 274 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~~ 274 (954)
.+++.|+|++|+||||+++.+++.... ..+ ...|+ +....+..+++..|+..++..... .+.......+. ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 457899999999999999999985321 111 22333 334567788899999888765332 22222333333 22
Q ss_pred -hcCceeEEEecCCCCCCccChhhHHhhhcCC---CCCcEEEEecCchhHHhhhc----------CcceEeCCCCCHHHH
Q 036345 275 -IAGKKFLLVLDDMWTDDYSKWEPFNNCLMNG---LRGSKILVTTRKKTVAQMME----------STDVFSIKELSKQEC 340 (954)
Q Consensus 275 -l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~---~~gs~iiiTtr~~~v~~~~~----------~~~~~~l~~L~~~~~ 340 (954)
..+++.++|+||+|.-+...++.+....... .....|++|.... ....+. ....+++++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 2678899999999887666666665432221 2223455665443 221111 134678999999999
Q ss_pred HHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhh
Q 036345 341 WSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLL 385 (954)
Q Consensus 341 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 385 (954)
.+++...+..........-..+..+.|++.++|.|..+..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999988764322111111235778889999999999999998776
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.22 E-value=9.6e-09 Score=114.47 Aligned_cols=303 Identities=13% Similarity=0.094 Sum_probs=174.0
Q ss_pred cCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc-ccc---ceEEEEEeCCCCCHHH
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM-NSF---EIRMWVCVSDPFDEFR 245 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~s~~~~~~~ 245 (954)
.++.++||+.++++|...|..... +.....+.|+|++|+|||++++.++++.... ... -..+|+.+....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999875322 2234578999999999999999998742110 111 1356788877778889
Q ss_pred HHHHHHHHhh---cCCC-CcccHHHHHHHHHHHhc--CceeEEEecCCCCCCccChhh-HHhhhcC----CC--CCcEEE
Q 036345 246 VARAIIEALE---GSAS-NLGELQSLLQRIQTSIA--GKKFLLVLDDMWTDDYSKWEP-FNNCLMN----GL--RGSKIL 312 (954)
Q Consensus 246 ~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~~-l~~~l~~----~~--~gs~ii 312 (954)
++..|++++. ...+ ...+..+....+.+.+. +++++||||+++.-. ...+. +...+.. .. ....+|
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~-~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV-GDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc-cCCcHHHHhHhccccccCCCCCeEEEE
Confidence 9999999984 2211 12234455556666553 567899999996531 11122 2222211 11 233445
Q ss_pred EecCchhHHhhhc-----C--cceEeCCCCCHHHHHHHHHHHHcCC-CCCCCchhHHHHHHHHHHhcCCChHHHHHHHh-
Q 036345 313 VTTRKKTVAQMME-----S--TDVFSIKELSKQECWSLFKRFAFFG-RHPSECEQLEEIGRKIVSRCKGLPLAAKTIGS- 383 (954)
Q Consensus 313 iTtr~~~v~~~~~-----~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~- 383 (954)
.+|........+. . ...+.+++++.++..+++..++... ......++..+....++..+.|.|-.+..+..
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5554433221111 1 2468899999999999999876311 11112233334455567777788854433221
Q ss_pred hh----cCC---CCHHHHHHHHhhhhhcccccccchhhHHHhhhcCCChhhhhHHhHhcCCC--CCcccchHHHHHHHHH
Q 036345 384 LL----RFK---KTREEWQRILDSEMWKLKEFEKGLLAPLLLSYNDLPTMVKRCFSYCAVFP--KDYNIEKDELIKVWMA 454 (954)
Q Consensus 384 ~l----~~~---~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp--~~~~i~~~~li~~w~a 454 (954)
.. ..+ -+.++...+.+... .....-+...||.+.|..+..++..- .+..+...++...+-.
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 11 111 23444444333210 12233456789998887666554221 3344666666653321
Q ss_pred -hcccCCCCCchHHHHHHHHHHHHHhcCCceeee
Q 036345 455 -QGYIGPKENEEMEIIGQEYFDYLATRSFFQEFE 487 (954)
Q Consensus 455 -~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 487 (954)
...+... .........+++.|...|++....
T Consensus 320 ~~~~~~~~--~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCEDIGVD--PLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHhcCCC--CCcHHHHHHHHHHHHhcCCeEEEE
Confidence 1111211 122456778899999999998754
No 26
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.15 E-value=4.6e-09 Score=119.15 Aligned_cols=296 Identities=21% Similarity=0.228 Sum_probs=191.5
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD-PFDEFRVARA 249 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~ 249 (954)
..+.|-|.. +.+.|.. ..+.+.+.|..++|.|||||+-..+.. . ..-..+.|.+.++ +.+...+...
T Consensus 18 ~~~~v~R~r----L~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~--~-~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRPR----LLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWREL--A-ADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccHH----HHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHh--c-CcccceeEeecCCccCCHHHHHHH
Confidence 344555544 5555543 236899999999999999999888651 1 1224689999764 5678889999
Q ss_pred HHHHhhcCCCCc-------------ccHHHHHHHHHHHhc--CceeEEEecCCCCCCccChhh-HHhhhcCCCCCcEEEE
Q 036345 250 IIEALEGSASNL-------------GELQSLLQRIQTSIA--GKKFLLVLDDMWTDDYSKWEP-FNNCLMNGLRGSKILV 313 (954)
Q Consensus 250 i~~~l~~~~~~~-------------~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~~-l~~~l~~~~~gs~iii 313 (954)
++..++.-.++. .+...+...+...+. .++..+||||.+-........ +...+....++-.+||
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 998887433222 233344444444443 568999999986544334444 5555666778999999
Q ss_pred ecCchhH---HhhhcCcceEeCC----CCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhhc
Q 036345 314 TTRKKTV---AQMMESTDVFSIK----ELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLLR 386 (954)
Q Consensus 314 Ttr~~~v---~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 386 (954)
|||+..- ++.--.....+++ .++.+|+.++|.......- + +.-.+.+.+...|-+-|+..++-.++
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L---d----~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL---D----AADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC---C----hHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 9998742 2211112233332 5889999999988642211 1 34456799999999999999988887
Q ss_pred CCCCHHHHHHHHhhhhhcccccccchhhH-HHhhhcCCChhhhhHHhHhcCCCCCcccchHHHHHHHHHhcccCCCCCch
Q 036345 387 FKKTREEWQRILDSEMWKLKEFEKGLLAP-LLLSYNDLPTMVKRCFSYCAVFPKDYNIEKDELIKVWMAQGYIGPKENEE 465 (954)
Q Consensus 387 ~~~~~~~w~~~l~~~~~~~~~~~~~i~~~-l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 465 (954)
.+.+.+.-...+.. .++-+... ..--++.||+.+|..++-||+++.= . +.|+..- +
T Consensus 239 ~~~~~~q~~~~LsG-------~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L------------t 295 (894)
T COG2909 239 NNTSAEQSLRGLSG-------AASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL------------T 295 (894)
T ss_pred CCCcHHHHhhhccc-------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH------------h
Confidence 44444433333221 11112221 2234688999999999999999641 1 2233322 1
Q ss_pred HHHHHHHHHHHHHhcCCceeeeccCCCcEEEEeechhHHHHHHHhh
Q 036345 466 MEIIGQEYFDYLATRSFFQEFEKDEEGFVIRCKMHDIVHDFAQFLT 511 (954)
Q Consensus 466 ~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdli~dl~~~~~ 511 (954)
-++-+..++++|.+++++-..-++.. ..|+.|.++.|+...--
T Consensus 296 g~~ng~amLe~L~~~gLFl~~Ldd~~---~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 296 GEENGQAMLEELERRGLFLQRLDDEG---QWFRYHHLFAEFLRQRL 338 (894)
T ss_pred cCCcHHHHHHHHHhCCCceeeecCCC---ceeehhHHHHHHHHhhh
Confidence 13446778999999999876544433 26899999999987544
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.15 E-value=1e-10 Score=121.75 Aligned_cols=195 Identities=22% Similarity=0.191 Sum_probs=100.8
Q ss_pred eeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH---
Q 036345 174 VRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI--- 250 (954)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i--- 250 (954)
|+||+.|+++|.+++... ..+.+.|+|+.|+|||+|++.+.+. .+..-..++|+...+.... .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhh-hHHHHHHHH
Confidence 689999999999998753 2457899999999999999999884 2221113445444443322 222222
Q ss_pred -------HHHhhcCCC----------CcccHHHHHHHHHHHhc--CceeEEEecCCCCCC------ccChhhHHhhhcC-
Q 036345 251 -------IEALEGSAS----------NLGELQSLLQRIQTSIA--GKKFLLVLDDMWTDD------YSKWEPFNNCLMN- 304 (954)
Q Consensus 251 -------~~~l~~~~~----------~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~------~~~~~~l~~~l~~- 304 (954)
.+.+....+ ...........+.+.+. +++++||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111221111 11122222333333332 445999999994322 0111223333333
Q ss_pred -CCCCcEEEEecCchhHHhh--------hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 036345 305 -GLRGSKILVTTRKKTVAQM--------MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 305 -~~~gs~iiiTtr~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 375 (954)
......+|+++........ .+....+.+++|+.+++++++...+-.. ... +.-.+..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCH
Confidence 2233445555544444332 2234469999999999999999865332 111 112455588999999999
Q ss_pred HHHHH
Q 036345 376 LAAKT 380 (954)
Q Consensus 376 lai~~ 380 (954)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98864
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=2.9e-12 Score=140.34 Aligned_cols=248 Identities=19% Similarity=0.129 Sum_probs=121.6
Q ss_pred ccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccc-cccccccchhhhccCcCceeeccCcccc-c
Q 036345 552 VSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGV-EKSIREIPKEIEKLKHLRFLKLSQVDLE-E 629 (954)
Q Consensus 552 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-~~~l~~lp~~i~~L~~L~~L~L~~~~i~-~ 629 (954)
..+..+..|+.|.+.++.....-...++..+...+.|+.|+++++.... ...+..++..+.++++|++|++++|.+. .
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3444555677777777651000001133445566667777777764321 1123334556667777777777777765 3
Q ss_pred ccccccCCCC---ccEEeccccCCCc----cccccccCC-CCCCEEeccCccccc----cCCCCCCCCCCCCccCceEec
Q 036345 630 LPETCCELVN---LQTLDIEACGSLK----RLPQGIGKL-VNLRHLMISHNVYLD----YMPKGIERLTCLRTLRELVVS 697 (954)
Q Consensus 630 lp~~i~~L~~---L~~L~L~~~~~l~----~lp~~i~~l-~~L~~L~l~~~~~~~----~~p~~i~~L~~L~~L~~~~~~ 697 (954)
.+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.... .++..+..+.+|++|++..+.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 4444444444 7777777776221 223344555 677777777775321 111122223333333211100
Q ss_pred CCccCcccccccccCCceeEEcCCCCCCCcc-ccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCC
Q 036345 698 RKGCNLGGLRHLNHLRGSFRIRGLGNVTHVD-EAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPN 776 (954)
Q Consensus 698 ~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~-~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 776 (954)
+.... ......+...++|+.|++++|.+.+ .....+...+..+++
T Consensus 177 --------------------------l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~--------~~~~~l~~~~~~~~~ 222 (319)
T cd00116 177 --------------------------IGDAGIRALAEGLKANCNLEVLDLNNNGLTD--------EGASALAETLASLKS 222 (319)
T ss_pred --------------------------CchHHHHHHHHHHHhCCCCCEEeccCCccCh--------HHHHHHHHHhcccCC
Confidence 00000 0001112233567777777665431 112334444555667
Q ss_pred CCEEEEeeecCCCCCCcchh-c----ccCccEEEEeCcCCCCc-----CCCCCCCCCCceEeecCCC
Q 036345 777 IEVLKIFQYKGKTVFPSWIM-S----LCKLKVLLLSFCIKCEI-----MPPLGKLPSLEVLSIWNMN 833 (954)
Q Consensus 777 L~~L~l~~~~~~~~lp~~~~-~----l~~L~~L~L~~c~~~~~-----l~~l~~l~~L~~L~L~~~~ 833 (954)
|++|++++|.+....+..+. . .+.|++|++++|.+... ...+..+++|++|++++|.
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 77777777665431111111 1 25677777777655411 1123445667777776665
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.13 E-value=1.9e-12 Score=132.47 Aligned_cols=138 Identities=24% Similarity=0.318 Sum_probs=78.8
Q ss_pred EEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhccCcCce
Q 036345 541 MLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKLKHLRF 619 (954)
Q Consensus 541 ~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~ 619 (954)
+..+.++.++|..+. +.-..+.|..|. +..+.+..|+.++.||.|||++| .|..| |+.+..|+.|-.
T Consensus 52 dCr~~GL~eVP~~LP--~~tveirLdqN~----I~~iP~~aF~~l~~LRrLdLS~N------~Is~I~p~AF~GL~~l~~ 119 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLP--PETVEIRLDQNQ----ISSIPPGAFKTLHRLRRLDLSKN------NISFIAPDAFKGLASLLS 119 (498)
T ss_pred EccCCCcccCcccCC--CcceEEEeccCC----cccCChhhccchhhhceeccccc------chhhcChHhhhhhHhhhH
Confidence 333444444454432 234445555554 44555566677777777777777 55665 566666666665
Q ss_pred eeccC-ccccccccc-ccCCCCccEEeccccCCCccc-cccccCCCCCCEEeccCccccccCCC-CCCCCCCCCccC
Q 036345 620 LKLSQ-VDLEELPET-CCELVNLQTLDIEACGSLKRL-PQGIGKLVNLRHLMISHNVYLDYMPK-GIERLTCLRTLR 692 (954)
Q Consensus 620 L~L~~-~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~ 692 (954)
|-+.+ |+|+.+|.. +++|..||-|.+.-|+ +..+ ...++.|++|+.|.+..|. ...++. .+..+.+++++.
T Consensus 120 Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 120 LVLYGNNKITDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred HHhhcCCchhhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHh
Confidence 55544 667777654 5666777777776665 3333 3446667777766666653 344444 345555555553
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=3.7e-12 Score=139.51 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=46.6
Q ss_pred hhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCccccc-------ccccccCCCCccEEeccccCCC
Q 036345 579 PGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEE-------LPETCCELVNLQTLDIEACGSL 651 (954)
Q Consensus 579 ~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~~l 651 (954)
...+..+..|++|+++++.... ..+..++..+...+.|++|+++++.+.. ++..+..+++|+.|++++|...
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~-~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGE-EAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcH-HHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 3445556667777777763321 1123455555666667777776665442 2233445555566665555532
Q ss_pred ccccccccCCCC---CCEEeccCc
Q 036345 652 KRLPQGIGKLVN---LRHLMISHN 672 (954)
Q Consensus 652 ~~lp~~i~~l~~---L~~L~l~~~ 672 (954)
...+..+..+.+ |++|++++|
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCC
Confidence 223333332222 555555544
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.10 E-value=1.7e-09 Score=117.65 Aligned_cols=277 Identities=19% Similarity=0.183 Sum_probs=145.7
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
-.+|+|++..++.+..++...... ......+.|+|++|+||||||+.+++.. ...+ .++..+ .......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHH
Confidence 467999999999998887643211 2345678899999999999999998842 2221 112211 11222223333
Q ss_pred HHHhhcCCC-CcccH----HHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHHhhhc
Q 036345 251 IEALEGSAS-NLGEL----QSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQMME 325 (954)
Q Consensus 251 ~~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~~~ 325 (954)
+..+..... -.++. ....+.+...+.+.+..+|+|+..+. ..+. ..+ .+.+-|..|++...+...+.
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~--~~~~---~~l---~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAA--RSIR---LDL---PPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccc--ccee---ecC---CCceEEeecCCcccCCHHHH
Confidence 333321100 00000 11122233344444555555554221 1100 001 12345556666544333221
Q ss_pred C--cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhhhhh
Q 036345 326 S--TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLLRFKKTREEWQRILDSEMW 403 (954)
Q Consensus 326 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~~~~ 403 (954)
. ...+++++++.++..+++.+.+......- -.+....|++.|+|.|-.+..+...+ ..|........
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~----~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~~- 237 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVEI----DEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDGV- 237 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCCC-
Confidence 1 34689999999999999998775433222 24567789999999996555544432 12222111000
Q ss_pred cccccccchhhHHHhhhcCCChhhhhHHh-HhcCCCCCcccchHHHHHHHHHhcccCCCCCchHHHHHHHHHH-HHHhcC
Q 036345 404 KLKEFEKGLLAPLLLSYNDLPTMVKRCFS-YCAVFPKDYNIEKDELIKVWMAQGYIGPKENEEMEIIGQEYFD-YLATRS 481 (954)
Q Consensus 404 ~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~~~-~L~~~~ 481 (954)
-....-......+...|..|++..+.-+. ....|+.+ .+..+.+... +... .+.+++.++ .|++.+
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~------lg~~-----~~~~~~~~e~~Li~~~ 305 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAA------LGEE-----RDTIEDVYEPYLIQQG 305 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHH------HCCC-----cchHHHHhhHHHHHcC
Confidence 00011122334456677888887777775 66667655 4554444222 2211 122333444 799999
Q ss_pred Ccee
Q 036345 482 FFQE 485 (954)
Q Consensus 482 ll~~ 485 (954)
|++.
T Consensus 306 li~~ 309 (328)
T PRK00080 306 FIQR 309 (328)
T ss_pred Cccc
Confidence 9964
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.05 E-value=3.3e-09 Score=114.79 Aligned_cols=275 Identities=16% Similarity=0.151 Sum_probs=145.2
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAII 251 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 251 (954)
.+|+|++..+++|..++...... ......+.++|++|+|||+||+.+++. ....+ ..+..+.... ...+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~-~~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEK-PGDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcC-chhHHHHH
Confidence 57999999999998888643221 223456889999999999999999884 22222 1222111111 11222233
Q ss_pred HHhhcCCC-CcccH----HHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHHhhhc-
Q 036345 252 EALEGSAS-NLGEL----QSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQMME- 325 (954)
Q Consensus 252 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~~~- 325 (954)
..+..... -.++. ......+...+.+.+..+|+|+..+. ..|.. .+ .+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~~---~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSVRL---DL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cceee---cC---CCeEEEEecCCccccCHHHHh
Confidence 33322110 00000 11233344555555566666665321 12211 11 12455566777654433221
Q ss_pred -CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhhhhhc
Q 036345 326 -STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLLRFKKTREEWQRILDSEMWK 404 (954)
Q Consensus 326 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~~~~~ 404 (954)
-...+++++++.++..+++.+.+..... .. -.+....|++.|+|.|-.+..++..+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~---~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV-EI---EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC-Cc---CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 1346799999999999999987753322 11 14456779999999997665554432 11110000000
Q ss_pred c-cccccchhhHHHhhhcCCChhhhhHHh-HhcCCCCCcccchHHHHHHHHHhcccCCCCCchHHHHHHHHHH-HHHhcC
Q 036345 405 L-KEFEKGLLAPLLLSYNDLPTMVKRCFS-YCAVFPKDYNIEKDELIKVWMAQGYIGPKENEEMEIIGQEYFD-YLATRS 481 (954)
Q Consensus 405 ~-~~~~~~i~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~~~-~L~~~~ 481 (954)
. .+.-......+...|..++++.+.-+. ....++.+ .+..+.+... ... + ...++..++ .|++.+
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~------lg~----~-~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAA------LGE----D-ADTIEDVYEPYLLQIG 284 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHH------hCC----C-cchHHHhhhHHHHHcC
Confidence 0 000011223356678889988877665 55666533 3443332221 111 1 123455566 699999
Q ss_pred Ccee
Q 036345 482 FFQE 485 (954)
Q Consensus 482 ll~~ 485 (954)
|+..
T Consensus 285 li~~ 288 (305)
T TIGR00635 285 FLQR 288 (305)
T ss_pred Cccc
Confidence 9963
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.04 E-value=1e-11 Score=127.12 Aligned_cols=273 Identities=20% Similarity=0.209 Sum_probs=168.7
Q ss_pred CCceEEEEEEeccccCCcc-cccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecC-CCccccccccccchh-
Q 036345 534 KEKLYHLMLMINLFSTFPV-SIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITG-ESAGVEKSIREIPKE- 610 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~~~~~~l~~lp~~- 610 (954)
+....-+.+..|.++.+|. .|..+++||.|+++.|. +..+-|..|.+++.|-.|-+.+ | .|+.+|+.
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~----Is~I~p~AF~GL~~l~~Lvlyg~N------kI~~l~k~~ 135 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN----ISFIAPDAFKGLASLLSLVLYGNN------KITDLPKGA 135 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccc----hhhcChHhhhhhHhhhHHHhhcCC------chhhhhhhH
Confidence 6677789999999999876 68899999999999997 7777889999999998888877 6 88999865
Q ss_pred hhccCcCceeeccCcccccc-cccccCCCCccEEeccccCCCccccc-cccCCCCCCEEeccCcccccc-----------
Q 036345 611 IEKLKHLRFLKLSQVDLEEL-PETCCELVNLQTLDIEACGSLKRLPQ-GIGKLVNLRHLMISHNVYLDY----------- 677 (954)
Q Consensus 611 i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~----------- 677 (954)
+++|..|+.|.+.-|++..+ ...+..|++|..|.+..|. +..++. .+..+.+++++.+..|.....
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 89999999999999998855 4568899999999999987 777776 577899999998876653211
Q ss_pred -CCCCCCCCCCCCccCceEecCCccCc-ccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccc
Q 036345 678 -MPKGIERLTCLRTLRELVVSRKGCNL-GGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEA 755 (954)
Q Consensus 678 -~p~~i~~L~~L~~L~~~~~~~~~~~l-~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 755 (954)
.|...+......-..++.+......- +-...+..++..+.-.. ..........+..+++|+.|+|++|..+...
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d----~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~ 290 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED----FPDSICPAKCFKKLPNLRKLNLSNNKITRIE 290 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc----CcCCcChHHHHhhcccceEeccCCCccchhh
Confidence 11111111111111111100000000 00000111100000000 0000011123567889999999888765321
Q ss_pred cchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCC-CCCCCCCceEeecCCC
Q 036345 756 TDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPP-LGKLPSLEVLSIWNMN 833 (954)
Q Consensus 756 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~-l~~l~~L~~L~L~~~~ 833 (954)
..++.....+++|.+..|.+...--..+..+.+|+.|+|.+|+++..-|. +..+..|..|+|-.|+
T Consensus 291 ------------~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 291 ------------DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ------------hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 11233345666666666665441112233566777777777766554433 5566666666666555
No 34
>PF05729 NACHT: NACHT domain
Probab=98.94 E-value=5.8e-09 Score=101.93 Aligned_cols=143 Identities=17% Similarity=0.287 Sum_probs=87.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccc----cceEEEEEeCCCCCHH---HHHHHHHHHhhcCCCCcccHHHHHHHHH
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNS----FEIRMWVCVSDPFDEF---RVARAIIEALEGSASNLGELQSLLQRIQ 272 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 272 (954)
+++.|+|.+|+||||+++.++..-..... +...+|+......... .+...|..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 47899999999999999998875222221 4566677765543332 23333333332211 11111 122
Q ss_pred HH-hcCceeEEEecCCCCCCc--c-----Chhh-HHhhhcC-CCCCcEEEEecCchhH---HhhhcCcceEeCCCCCHHH
Q 036345 273 TS-IAGKKFLLVLDDMWTDDY--S-----KWEP-FNNCLMN-GLRGSKILVTTRKKTV---AQMMESTDVFSIKELSKQE 339 (954)
Q Consensus 273 ~~-l~~kr~LlVlDdvw~~~~--~-----~~~~-l~~~l~~-~~~gs~iiiTtr~~~v---~~~~~~~~~~~l~~L~~~~ 339 (954)
.. .+.++++||+|++.+-.. . .+.. +...++. ..++++++||+|.... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 257899999999954221 1 1222 2233333 3578999999998766 3333445689999999999
Q ss_pred HHHHHHHHH
Q 036345 340 CWSLFKRFA 348 (954)
Q Consensus 340 ~~~lf~~~~ 348 (954)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998764
No 35
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.93 E-value=6.5e-09 Score=108.16 Aligned_cols=171 Identities=23% Similarity=0.287 Sum_probs=104.9
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
..+++|-...+.++++ .+.+.-..+||++|+||||||+.+... ....|.. .+...+-.+-++++
T Consensus 29 Q~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f~~-----~sAv~~gvkdlr~i 92 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGT--TNAAFEA-----LSAVTSGVKDLREI 92 (436)
T ss_pred hHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHh--hCCceEE-----eccccccHHHHHHH
Confidence 3445555444444443 345667789999999999999999883 4444432 33222222222332
Q ss_pred HHHhhcCCCCcccHHHHHHHH-HHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEE--ecCchhH---Hhhh
Q 036345 251 IEALEGSASNLGELQSLLQRI-QTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILV--TTRKKTV---AQMM 324 (954)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iii--Ttr~~~v---~~~~ 324 (954)
++ .- .....+++.+|++|.|+.-+..+.+.+ ||.-..|..|+| ||-++.. ....
T Consensus 93 ~e-----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 93 IE-----------------EARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred HH-----------------HHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHh
Confidence 22 22 223358999999999988776666665 455556777777 6666542 2223
Q ss_pred cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCC--ch-hHHHHHHHHHHhcCCChHH
Q 036345 325 ESTDVFSIKELSKQECWSLFKRFAFFGRHPSE--CE-QLEEIGRKIVSRCKGLPLA 377 (954)
Q Consensus 325 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~--~~-~~~~~~~~i~~~c~glPla 377 (954)
....++.+++|+.++-.+++.+.+......-. .. --+++-..++..++|---+
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 44679999999999999999984422221111 11 1134556788888885543
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.92 E-value=1.6e-07 Score=107.51 Aligned_cols=213 Identities=11% Similarity=0.032 Sum_probs=129.0
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccc---ccccc--eEEEEEeCCCCCHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDV---MNSFE--IRMWVCVSDPFDEFR 245 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~s~~~~~~~ 245 (954)
++.+.|||+|+++|...|...-.+ .....++.|+|++|.|||+.++.|.+...- ..... .+++|.+..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 457899999999999888654321 223467889999999999999999764211 11112 356777777778889
Q ss_pred HHHHHHHHhhcCCC-CcccHHHHHHHHHHHhc---CceeEEEecCCCCCCccChhhHHhhhcC-CCCCcEEEE--ecCch
Q 036345 246 VARAIIEALEGSAS-NLGELQSLLQRIQTSIA---GKKFLLVLDDMWTDDYSKWEPFNNCLMN-GLRGSKILV--TTRKK 318 (954)
Q Consensus 246 ~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~---~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iii--Ttr~~ 318 (954)
++..|.+++....+ ...........+...+. +...+||||++..-....-+.|...+.+ ...+++|+| .|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999999954432 22233344555555442 2245999999953221122234433332 234555554 23221
Q ss_pred h--------HHhhhcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhh
Q 036345 319 T--------VAQMMESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLL 385 (954)
Q Consensus 319 ~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 385 (954)
. +...++ ...+...|++.++-.+++..++......-.+..++-+|+.++...|-.-.|+.++-.+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 1 212222 23467799999999999999885432223344555555655555555666766665444
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.80 E-value=7e-08 Score=98.81 Aligned_cols=152 Identities=13% Similarity=0.173 Sum_probs=95.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCce
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKK 279 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 279 (954)
+.+.|+|++|+|||+|++.+++. .......+.|+++... ..... .+.+.++ +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~~ 92 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-QQ 92 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-cC
Confidence 56899999999999999999984 3223345567765321 00000 1111121 23
Q ss_pred eEEEecCCCCCC-ccChhh-HHhhhcCC-CCCcEEE-EecCc---------hhHHhhhcCcceEeCCCCCHHHHHHHHHH
Q 036345 280 FLLVLDDMWTDD-YSKWEP-FNNCLMNG-LRGSKIL-VTTRK---------KTVAQMMESTDVFSIKELSKQECWSLFKR 346 (954)
Q Consensus 280 ~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~gs~ii-iTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 346 (954)
-+|||||+|... ...|+. +...+... ..|..+| +|+.. +.+...+.....+++++++.++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 489999998642 244553 44434322 2355554 45544 35555566667899999999999999999
Q ss_pred HHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 036345 347 FAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIG 382 (954)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 382 (954)
.++...-. . -+++..-|++.+.|..-++..+-
T Consensus 173 ~a~~~~l~-l---~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 173 NAYQRGIE-L---SDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHcCCC-C---CHHHHHHHHHhccCCHHHHHHHH
Confidence 88643321 1 25667779999988776655443
No 38
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.72 E-value=2.6e-07 Score=103.74 Aligned_cols=178 Identities=21% Similarity=0.266 Sum_probs=106.4
Q ss_pred CceeechhhhhH---HHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 172 SEVRGRDEEKNS---LKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 172 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
.++||++..+.. +..++.. .....+.++|++|+||||+|+.+++. .... |+.++......+-++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHH
Confidence 468888877655 6666643 24456888999999999999999884 2222 222222111111122
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHH-hcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEE--ecCchh--HH-h
Q 036345 249 AIIEALEGSASNLGELQSLLQRIQTS-IAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILV--TTRKKT--VA-Q 322 (954)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iii--Ttr~~~--v~-~ 322 (954)
.+++ ..... ..+++.+|++|++|.-...+.+.+...+.. |..++| ||.+.. +. .
T Consensus 79 ~ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 2222 11111 246788999999987665566666555443 445554 344332 11 1
Q ss_pred hhcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHh
Q 036345 323 MMESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGS 383 (954)
Q Consensus 323 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 383 (954)
.......+.+.+++.++.+.++.+.+....... ..-..+..+.|++.|+|.+..+..+..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 122346899999999999999988653211100 012245667799999999977654443
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.72 E-value=7.8e-10 Score=118.79 Aligned_cols=122 Identities=34% Similarity=0.461 Sum_probs=99.0
Q ss_pred cCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccccccC
Q 036345 557 AKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETCCE 636 (954)
Q Consensus 557 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~ 636 (954)
+..-...+++.|. +. .+|..+..|-.|..|.|+.| .+..+|..+++|..|.||+|+.|.+..+|..+|.
T Consensus 74 ltdt~~aDlsrNR----~~-elp~~~~~f~~Le~liLy~n------~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~ 142 (722)
T KOG0532|consen 74 LTDTVFADLSRNR----FS-ELPEEACAFVSLESLILYHN------CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCD 142 (722)
T ss_pred ccchhhhhccccc----cc-cCchHHHHHHHHHHHHHHhc------cceecchhhhhhhHHHHhhhccchhhcCChhhhc
Confidence 3334445666665 22 25666777888888999888 8888999999999999999999999999999998
Q ss_pred CCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccC
Q 036345 637 LVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLR 692 (954)
Q Consensus 637 L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 692 (954)
|+ |+.|.+++|+ +..+|..|+.+..|.+|+.+.|. +..+|..++.+++|+.|.
T Consensus 143 lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 143 LP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred Cc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHH
Confidence 87 9999999887 89999999999999999998874 467787777777777664
No 40
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.71 E-value=4e-07 Score=110.09 Aligned_cols=312 Identities=16% Similarity=0.129 Sum_probs=178.3
Q ss_pred ceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEE---EeCCCC---CHHHH
Q 036345 173 EVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWV---CVSDPF---DEFRV 246 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv---~~s~~~---~~~~~ 246 (954)
.++||+.+++.|...+..... +...++.|.|..|||||+|++.|... +.+.+...+-- ....+. .....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHH
Confidence 378999999999999887764 46679999999999999999999773 33222111111 111111 12234
Q ss_pred HHHHHHHhhcCC-------------------C-------------C---------cccHHH-----HHHHHHHHh-cCce
Q 036345 247 ARAIIEALEGSA-------------------S-------------N---------LGELQS-----LLQRIQTSI-AGKK 279 (954)
Q Consensus 247 ~~~i~~~l~~~~-------------------~-------------~---------~~~~~~-----~~~~l~~~l-~~kr 279 (954)
+++++.++.... . + ....+. ....+.-.. +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 444444441110 0 0 000011 112222223 4569
Q ss_pred eEEEecCCCCCCccChhhHHhhhcCCCC----CcEEE--EecCch--hHHhhhcCcceEeCCCCCHHHHHHHHHHHHcCC
Q 036345 280 FLLVLDDMWTDDYSKWEPFNNCLMNGLR----GSKIL--VTTRKK--TVAQMMESTDVFSIKELSKQECWSLFKRFAFFG 351 (954)
Q Consensus 280 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~----gs~ii--iTtr~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 351 (954)
.++|+||+.+.|....+-+......... -..|. .|.+.. .+...-.....+.+.||+..+.-.+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 9999999976666555554443332210 11222 223322 121112335689999999999999998876332
Q ss_pred CCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhhcCC------CCHHHHHHHHhhhhhcccccccchhhHHHhhhcCCCh
Q 036345 352 RHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLLRFK------KTREEWQRILDSEMWKLKEFEKGLLAPLLLSYNDLPT 425 (954)
Q Consensus 352 ~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 425 (954)
.. ...+..+.|+++..|+|+.+..+-..+... .+...|..=... .......++ +...+..-.+.||.
T Consensus 236 ~~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~~~-vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 KL-----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATTDA-VVEFLAARLQKLPG 308 (849)
T ss_pred cc-----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhhHH-HHHHHHHHHhcCCH
Confidence 22 224567779999999999999998887653 233344432211 111111222 55568888999999
Q ss_pred hhhhHHhHhcCCCCCcccchHHHHHHHHHhcccCCCCCchHHHHHHHHHHHHHhcCCceeeeccCC---CcEE-EEeech
Q 036345 426 MVKRCFSYCAVFPKDYNIEKDELIKVWMAQGYIGPKENEEMEIIGQEYFDYLATRSFFQEFEKDEE---GFVI-RCKMHD 501 (954)
Q Consensus 426 ~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~---~~~~-~~~mHd 501 (954)
..+...-..|++-. .|+.+.|...|-. .....+....+.|....++...+.... .... |-..||
T Consensus 309 ~t~~Vl~~AA~iG~--~F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 309 TTREVLKAAACIGN--RFDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHHhCc--cCCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 99999999999964 4556666555522 234455555566655555542211111 1111 224688
Q ss_pred hHHHHHH
Q 036345 502 IVHDFAQ 508 (954)
Q Consensus 502 li~dl~~ 508 (954)
++++.+-
T Consensus 377 ~vqqaaY 383 (849)
T COG3899 377 RVQQAAY 383 (849)
T ss_pred HHHHHHh
Confidence 8877664
No 41
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.68 E-value=2.4e-07 Score=90.52 Aligned_cols=182 Identities=21% Similarity=0.245 Sum_probs=100.9
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
-.+|||.+.-++.+.-++..... ..+....+.+||++|+||||||+.+++. ....|. +.+.+. ..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~-i~-------- 87 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA-IE-------- 87 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC-----------
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh-hh--------
Confidence 46899999888887655543221 1346778999999999999999999984 444442 222211 00
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCC--------CCCc-----------EE
Q 036345 251 IEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNG--------LRGS-----------KI 311 (954)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~--------~~gs-----------~i 311 (954)
...++...+.. + +++-+|++|+++.-+..+-+.|...+.++ ++++ -|
T Consensus 88 ------------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 88 ------------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp ------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred ------------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 01112222221 2 34557888999877666556666655443 1111 23
Q ss_pred EEecCchhHHhhhcC-c-ceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhh
Q 036345 312 LVTTRKKTVAQMMES-T-DVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLL 385 (954)
Q Consensus 312 iiTtr~~~v~~~~~~-~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 385 (954)
=-|||...+...+.. . -..+++..+.+|-.++..+.+..-. -+--++.+.+|++.|.|-|--+.-+-+..
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 347777655544433 2 2458999999999999988663322 22336788999999999998666554443
No 42
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.66 E-value=2.9e-07 Score=94.91 Aligned_cols=171 Identities=16% Similarity=0.128 Sum_probs=101.0
Q ss_pred chhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhc
Q 036345 177 RDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEG 256 (954)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 256 (954)
.+..++.+..++.. .....+.|+|+.|+|||+||+.+++. ........++++++.-. ...
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~------~~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELA------QAD------ 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHH------HhH------
Confidence 34456667666542 23568899999999999999999874 22223345566554321 000
Q ss_pred CCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCcc-Ch-hhHHhhhcC-CCCCcEEEEecCchh---------HHhhh
Q 036345 257 SASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYS-KW-EPFNNCLMN-GLRGSKILVTTRKKT---------VAQMM 324 (954)
Q Consensus 257 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~-~~-~~l~~~l~~-~~~gs~iiiTtr~~~---------v~~~~ 324 (954)
. .+...+++ .-+|||||++.-... .| ..+...+.. ...+..+|+||+... +...+
T Consensus 82 --------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 0 11111222 238999999653322 23 335444432 123457888887532 22223
Q ss_pred cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhh
Q 036345 325 ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSL 384 (954)
Q Consensus 325 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 384 (954)
.....+++.+++.++...++.+.+-.... .. -.+..+.+++.+.|.|..+..+...
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~---~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGL-QL---PDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHhccCCHHHHHHHHHH
Confidence 33457999999999999999875532211 11 1455567888899999887766433
No 43
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.62 E-value=6.9e-07 Score=91.23 Aligned_cols=159 Identities=22% Similarity=0.256 Sum_probs=101.2
Q ss_pred CCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHh
Q 036345 196 PNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSI 275 (954)
Q Consensus 196 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 275 (954)
++...-+.+||++|+||||||+.+.+..+-.. ..||..|....-..-.++|.++... ...+
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l 219 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSL 219 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhh
Confidence 34566788999999999999999988533222 4566666544333334444443211 1234
Q ss_pred cCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEE--ecCchhH---HhhhcCcceEeCCCCCHHHHHHHHHHHHc-
Q 036345 276 AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILV--TTRKKTV---AQMMESTDVFSIKELSKQECWSLFKRFAF- 349 (954)
Q Consensus 276 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iii--Ttr~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~- 349 (954)
.++|.+|++|+|+.-+..+.+.+ +|.-.+|+.++| ||-++.. +..+....++.+++|+.++-..++.+..-
T Consensus 220 ~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 68899999999987666555554 566667887776 6666543 22244567999999999999999887332
Q ss_pred -C-CCC---CCCc-h--hHHHHHHHHHHhcCCChH
Q 036345 350 -F-GRH---PSEC-E--QLEEIGRKIVSRCKGLPL 376 (954)
Q Consensus 350 -~-~~~---~~~~-~--~~~~~~~~i~~~c~glPl 376 (954)
+ ... .-+. . .-..+.+-++..|.|-.-
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1 111 1111 1 224455667777888553
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1e-08 Score=107.07 Aligned_cols=123 Identities=19% Similarity=0.164 Sum_probs=67.0
Q ss_pred HHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCc--CCCCCCCCCCceEeecCCCCceEeCccc
Q 036345 765 EATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEI--MPPLGKLPSLEVLSIWNMNSVKTVGDEF 842 (954)
Q Consensus 765 ~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~--l~~l~~l~~L~~L~L~~~~~l~~~~~~~ 842 (954)
.++...+..+|+|+.|.+.+|.+....-.....++.|+.|+|++|.+... .+..+.||.|..|+++.|. +.++..--
T Consensus 212 k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d 290 (505)
T KOG3207|consen 212 KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPD 290 (505)
T ss_pred HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCC
Confidence 33444555566777777776642210111122456677777777765443 3556777777777777665 33332111
Q ss_pred ccCCCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceeccccc
Q 036345 843 LGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENC 900 (954)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c 900 (954)
.+.. .....||+|++|.+...+ ..+|... ..+..+++|+.|.+..+
T Consensus 291 ~~s~---------~kt~~f~kL~~L~i~~N~-I~~w~sl--~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 291 VESL---------DKTHTFPKLEYLNISENN-IRDWRSL--NHLRTLENLKHLRITLN 336 (505)
T ss_pred ccch---------hhhcccccceeeecccCc-ccccccc--chhhccchhhhhhcccc
Confidence 1000 112367777777776543 4445544 44556677777766554
No 45
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.59 E-value=8.7e-08 Score=89.28 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=78.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccc---cccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVM---NSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTS 274 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 274 (954)
..+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...|+.+++.......+.+.+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45689999999999999999998842110 003456799998888999999999999988765545667777778887
Q ss_pred hcCc-eeEEEecCCCCC-CccChhhHHhhhcCCCCCcEEEEecCc
Q 036345 275 IAGK-KFLLVLDDMWTD-DYSKWEPFNNCLMNGLRGSKILVTTRK 317 (954)
Q Consensus 275 l~~k-r~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iiiTtr~ 317 (954)
+... ..+||+||+..- +...++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7544 469999999543 3233333433222 566777777654
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.59 E-value=2.3e-09 Score=108.90 Aligned_cols=258 Identities=21% Similarity=0.199 Sum_probs=140.7
Q ss_pred cCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcc----ccccccc-------ccCCCCccEEeccccCCC
Q 036345 583 DQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVD----LEELPET-------CCELVNLQTLDIEACGSL 651 (954)
Q Consensus 583 ~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~----i~~lp~~-------i~~L~~L~~L~L~~~~~l 651 (954)
..+..+..|+|++|.++.. --+.+.+.+.+.++|+.-++++-. ..++|+. +-.+++|++||||.|-.-
T Consensus 27 ~~~~s~~~l~lsgnt~G~E-Aa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTE-AARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHH-HHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3445555555555543321 112233344455555555555432 1133332 345567777777776532
Q ss_pred cccc----ccccCCCCCCEEeccCccccccCCCCCCCCC-CCCccCceEecCCccCcccccccccCCceeEEcCCCCCCC
Q 036345 652 KRLP----QGIGKLVNLRHLMISHNVYLDYMPKGIERLT-CLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTH 726 (954)
Q Consensus 652 ~~lp----~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~-~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~ 726 (954)
..-+ .-|.++.+|+||++.+|-. . |.+=+.+. .|..| .
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g--~~ag~~l~~al~~l---------------~------------------- 148 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGL-G--PEAGGRLGRALFEL---------------A------------------- 148 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCC-C--hhHHHHHHHHHHHH---------------H-------------------
Confidence 2222 2355678888888887732 1 11100000 01111 1
Q ss_pred ccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCC----CCcchhcccCcc
Q 036345 727 VDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTV----FPSWIMSLCKLK 802 (954)
Q Consensus 727 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----lp~~~~~l~~L~ 802 (954)
......+.+.|+.+....|++.. .....+...++.++.|+.+.+..|.+... +...+..+++|+
T Consensus 149 ----~~kk~~~~~~Lrv~i~~rNrlen--------~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Le 216 (382)
T KOG1909|consen 149 ----VNKKAASKPKLRVFICGRNRLEN--------GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLE 216 (382)
T ss_pred ----HHhccCCCcceEEEEeecccccc--------ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcce
Confidence 11223456788999888887652 23445566777889999999998876431 111233788999
Q ss_pred EEEEeCcCCCCcC-----CCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccccccc
Q 036345 803 VLLLSFCIKCEIM-----PPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEE 877 (954)
Q Consensus 803 ~L~L~~c~~~~~l-----~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~ 877 (954)
.|+|.+|.+...- ..+..+|+|+.|++++|. ++.-+..-+.. .....+|+|+.|.+.++.--.+
T Consensus 217 vLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~----------al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 217 VLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVD----------ALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred eeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHH----------HHhccCCCCceeccCcchhHHH
Confidence 9999998765421 136678899999999987 44333211100 0112578888888876531110
Q ss_pred cccccccccccccccceecccccc
Q 036345 878 WDFGEEDNITVMPQLNSLKIENCS 901 (954)
Q Consensus 878 ~~~~~~~~~~~~p~L~~L~l~~c~ 901 (954)
-.......+...|.|.+|+|++|.
T Consensus 286 a~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 286 AALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHHHhcchhhHHhcCCccc
Confidence 000001112357888888888885
No 47
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=3e-08 Score=95.05 Aligned_cols=130 Identities=25% Similarity=0.317 Sum_probs=51.0
Q ss_pred ccccCcceEEEeeccCCccccCCCchhhhc-CCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccc
Q 036345 554 IRYAKKLRSLFLVANGSFKVLSPVLPGLFD-QLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPE 632 (954)
Q Consensus 554 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~ 632 (954)
+.++.++|.|++.++. +.. +.. ++ .+.+|++|+|++| .+..+. .+..+++|+.|++++|.|+.+++
T Consensus 15 ~~n~~~~~~L~L~~n~----I~~-Ie~-L~~~l~~L~~L~Ls~N------~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ----IST-IEN-LGATLDKLEVLDLSNN------QITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp --------------------------S---TT-TT--EEE-TTS--------S--T-T----TT--EEE--SS---S-CH
T ss_pred cccccccccccccccc----ccc-ccc-hhhhhcCCCEEECCCC------CCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 3455577888888886 332 222 33 5778999999999 677774 47788999999999999998876
Q ss_pred cc-cCCCCccEEeccccCCCcccc--ccccCCCCCCEEeccCccccccCCC----CCCCCCCCCccCceEecC
Q 036345 633 TC-CELVNLQTLDIEACGSLKRLP--QGIGKLVNLRHLMISHNVYLDYMPK----GIERLTCLRTLRELVVSR 698 (954)
Q Consensus 633 ~i-~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~~ 698 (954)
.+ ..+++|++|++++|. +..+- ..+..+++|++|++.+|+.... +. .+..+++|+.|+...+..
T Consensus 82 ~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEETTS
T ss_pred chHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEccH
Confidence 55 468999999999887 55443 2366788999999998876432 21 256677888887665543
No 48
>PRK04195 replication factor C large subunit; Provisional
Probab=98.57 E-value=6.5e-06 Score=94.41 Aligned_cols=249 Identities=16% Similarity=0.155 Sum_probs=139.4
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
-.+++|.+..++++..|+..... +...+.+.|+|++|+||||+|+.+++.. .|+ .+-++++...+ ...+..+
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~-~~~i~~~ 84 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRT-ADVIERV 84 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEccccccc-HHHHHHH
Confidence 45799999999999999875432 2236789999999999999999999852 122 23334443222 2223333
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCc----cChhhHHhhhcCCCCCcEEEEecCch-hHHh-hh
Q 036345 251 IEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDY----SKWEPFNNCLMNGLRGSKILVTTRKK-TVAQ-MM 324 (954)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~----~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~-~~ 324 (954)
+....... .....++-+||||++..-.. ..+..+...+... +..||+|+.+. .... .+
T Consensus 85 i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhH
Confidence 32221110 01113677999999965322 2355565555432 33455555432 2211 11
Q ss_pred -cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhhcCCC---CHHHHHHHHhh
Q 036345 325 -ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLLRFKK---TREEWQRILDS 400 (954)
Q Consensus 325 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~---~~~~w~~~l~~ 400 (954)
.....+++.+++.++....+.+.+........ .++...|++.++|..-.+......+..+. +.+.-..+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 23467999999999999988876644332222 45667799999997766544333333221 2333332221
Q ss_pred hhhcccccccchhhHHHhhhc-CCChhhhhHHhHhcCCCCCcccchHHHHHHHHHhcccCCC
Q 036345 401 EMWKLKEFEKGLLAPLLLSYN-DLPTMVKRCFSYCAVFPKDYNIEKDELIKVWMAQGYIGPK 461 (954)
Q Consensus 401 ~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 461 (954)
.+.+..++.++..-+. .-+......+..+ .++. ..+-.|+.|.+....
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhcccccc
Confidence 1223446666664443 2223333322221 1222 457789999997653
No 49
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.2e-06 Score=90.89 Aligned_cols=206 Identities=16% Similarity=0.187 Sum_probs=131.7
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccc--eEEEEEeCCCCCHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFE--IRMWVCVSDPFDEFRVARA 249 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~ 249 (954)
..+.+|+.+++++...|...-. +..+.-+.|+|..|+|||+.++.|.+. +..... .+++|++-...+..+++..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 4489999999999988765543 223334899999999999999999984 332221 2789999999999999999
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHHhc--CceeEEEecCCCCCCccChhhHHhhhcCCCC-CcEEEE--ecCchhHHhhh
Q 036345 250 IIEALEGSASNLGELQSLLQRIQTSIA--GKKFLLVLDDMWTDDYSKWEPFNNCLMNGLR-GSKILV--TTRKKTVAQMM 324 (954)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~-gs~iii--Ttr~~~v~~~~ 324 (954)
|+++++..........+....+.+.+. ++.++||||++..-....-+.+...+..... .++|++ .+.+......+
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999997554444556667777777774 6789999999943221111344444444322 344433 33333332222
Q ss_pred cC-------cceEeCCCCCHHHHHHHHHHHHcCCCCC--CCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 325 ES-------TDVFSIKELSKQECWSLFKRFAFFGRHP--SECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 325 ~~-------~~~~~l~~L~~~~~~~lf~~~~~~~~~~--~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
.. ...+...|-+.+|-.+++..++-..-.. -.+..++-++...++..|---.|+..+
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 11 2247899999999999999877432211 222334444444444444444554444
No 50
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2.5e-06 Score=93.91 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=110.6
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccccc-------------------ccce
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMN-------------------SFEI 231 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~ 231 (954)
-.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+++.-.... .+..
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d 89 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLD 89 (363)
T ss_pred hhhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 357899999999998888642 2345778999999999999998876311000 0111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHH-hcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcE
Q 036345 232 RMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTS-IAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSK 310 (954)
Q Consensus 232 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 310 (954)
..++..+....+ .+..++...+... ..+++-++|+|++..-....++.+...+.......+
T Consensus 90 ~~~~~~~~~~~v------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 90 LIEIDAASRTKV------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred eEEecccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 122211111111 1111111111110 124556999999976655567777777766556677
Q ss_pred EEEecCch-hHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHH
Q 036345 311 ILVTTRKK-TVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAK 379 (954)
Q Consensus 311 iiiTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 379 (954)
+|++|.+. .+...+ +....+++.+++.++..+.+.+.+......- -.+.+..|++.++|.|-.+.
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i----~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT----DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 77766543 333222 2246899999999999998887654322111 14556779999999886443
No 51
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2e-06 Score=93.00 Aligned_cols=180 Identities=17% Similarity=0.210 Sum_probs=117.6
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC----cccccccceEEEEEe-CCCCCHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND----NDVMNSFEIRMWVCV-SDPFDEFRV 246 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~----~~~~~~f~~~~wv~~-s~~~~~~~~ 246 (954)
.+++|-+..++.+...+... .-.....++|+.|+||||+|+.+++. .....|.+...|... +....+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 46889888899999988643 24567789999999999999888762 122345665555442 22222222
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHH-hh-h
Q 036345 247 ARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVA-QM-M 324 (954)
Q Consensus 247 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~-~~-~ 324 (954)
.+++.+.+... ...+++-++|+|++...+...+..+...+.....++.+|++|.+.+.. .. .
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22222222111 112455677788876666778899999888877889999888665421 11 1
Q ss_pred cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 325 ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 325 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
.....+++.++++++....+.+...+ . . .+.++.++..++|.|..+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~-~---~----~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND-I---K----EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC-C---C----HHHHHHHHHHcCCCHHHHHHH
Confidence 22568999999999998888664311 1 1 233567899999998765433
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.53 E-value=4.5e-09 Score=113.08 Aligned_cols=195 Identities=25% Similarity=0.236 Sum_probs=143.6
Q ss_pred CCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCC
Q 036345 585 LTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNL 664 (954)
Q Consensus 585 l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L 664 (954)
+..-...||+.| .+.++|...+.+..|..|.|+.|.|..+|..+++|..|.+|||+.|. ++.+|..+..|+ |
T Consensus 74 ltdt~~aDlsrN------R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-L 145 (722)
T KOG0532|consen 74 LTDTVFADLSRN------RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-L 145 (722)
T ss_pred ccchhhhhcccc------ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-c
Confidence 334455788888 78889999999999999999999999999999999999999999988 899999988776 8
Q ss_pred CEEeccCccccccCCCCCCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceE
Q 036345 665 RHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCL 744 (954)
Q Consensus 665 ~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 744 (954)
+.|-+++| .++.+|..++.+..|..|+...+... . ..+.+..+..|+.|
T Consensus 146 kvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~--------s----------------------lpsql~~l~slr~l 194 (722)
T KOG0532|consen 146 KVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQ--------S----------------------LPSQLGYLTSLRDL 194 (722)
T ss_pred eeEEEecC-ccccCCcccccchhHHHhhhhhhhhh--------h----------------------chHHhhhHHHHHHH
Confidence 99988877 56899999997777766654332111 0 01122233445555
Q ss_pred EEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCC---CCCC
Q 036345 745 ELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPP---LGKL 821 (954)
Q Consensus 745 ~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~---l~~l 821 (954)
.+..|+.. .+++-+. .-.|.+|+++.|.+.. +|-.+..+..|++|.|.+|++...... -|..
T Consensus 195 ~vrRn~l~-------------~lp~El~-~LpLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkV 259 (722)
T KOG0532|consen 195 NVRRNHLE-------------DLPEELC-SLPLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKV 259 (722)
T ss_pred HHhhhhhh-------------hCCHHHh-CCceeeeecccCceee-cchhhhhhhhheeeeeccCCCCCChHHHHhccce
Confidence 55544422 1333333 3358899999999988 999999999999999999987654332 3455
Q ss_pred CCCceEeecCCC
Q 036345 822 PSLEVLSIWNMN 833 (954)
Q Consensus 822 ~~L~~L~L~~~~ 833 (954)
--.++|+..-|.
T Consensus 260 HIFKyL~~qA~q 271 (722)
T KOG0532|consen 260 HIFKYLSTQACQ 271 (722)
T ss_pred eeeeeecchhcc
Confidence 556777777763
No 53
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=3e-07 Score=104.20 Aligned_cols=197 Identities=17% Similarity=0.178 Sum_probs=113.2
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAII 251 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 251 (954)
.+++|.+..++.|..++.... -...+.++|++|+||||+|+.+++.-...+.+....|.|.+... +......-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 568999988888888887532 34567999999999999999887642111112212222221100 000000000
Q ss_pred HHhhcC-CCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCc-hhHHhhh-cCc
Q 036345 252 EALEGS-ASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRK-KTVAQMM-EST 327 (954)
Q Consensus 252 ~~l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v~~~~-~~~ 327 (954)
..+... .....++.++...+.. ...+++-++|+|+++......+..+...+......+.+|++|.. ..+...+ ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 000000 0011111222222211 12355668999999776666777887777665555566655543 3333322 235
Q ss_pred ceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 036345 328 DVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAA 378 (954)
Q Consensus 328 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 378 (954)
..+++.+++.++..+.+.+.+...+... -.+....|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 6899999999999999988764433211 1456677999999988654
No 54
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=5.4e-06 Score=95.15 Aligned_cols=182 Identities=14% Similarity=0.142 Sum_probs=115.1
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc-------------------cccce
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM-------------------NSFEI 231 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~ 231 (954)
-.+++|.+..++.|..++... .-...+.++|..|+||||+|+.+.+.-... +.|..
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D 89 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD 89 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce
Confidence 367999999999999988643 234566799999999999998776631110 11112
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH----HhcCceeEEEecCCCCCCccChhhHHhhhcCCCC
Q 036345 232 RMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQT----SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLR 307 (954)
Q Consensus 232 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 307 (954)
+++++.+... .++++.+.+.. -..++.-++|||+++.-+...|..|...+.....
T Consensus 90 viEIDAas~r---------------------gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~ 148 (830)
T PRK07003 90 YVEMDAASNR---------------------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPP 148 (830)
T ss_pred EEEecccccc---------------------cHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCC
Confidence 2333222211 11222222211 1134555899999987776778888887776666
Q ss_pred CcEEEEecCchh-HHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHHH
Q 036345 308 GSKILVTTRKKT-VAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPL-AAKTIG 382 (954)
Q Consensus 308 gs~iiiTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 382 (954)
..++|+||.+.. +... ......++++.++.++..+.+.+.........+ .+..+.|++.++|..- |+..+-
T Consensus 149 ~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred CeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 778887777643 3222 223568999999999999999886643322111 4556779999988654 554433
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.53 E-value=4.7e-08 Score=110.26 Aligned_cols=103 Identities=36% Similarity=0.501 Sum_probs=78.2
Q ss_pred hcCCCceeEEEecCCCccccccccccchhhhccC-cCceeeccCcccccccccccCCCCccEEeccccCCCccccccccC
Q 036345 582 FDQLTFLRTLKITGESAGVEKSIREIPKEIEKLK-HLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGK 660 (954)
Q Consensus 582 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 660 (954)
+..++.+..|++.++ .+..+|..+..+. +|+.|++++|.+..+|..++.+++|+.|+++.|. +..+|.....
T Consensus 112 ~~~~~~l~~L~l~~n------~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~ 184 (394)
T COG4886 112 LLELTNLTSLDLDNN------NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSN 184 (394)
T ss_pred hhcccceeEEecCCc------ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhh
Confidence 345577888888888 7777877777774 8888888888888888888888888888888887 7788877667
Q ss_pred CCCCCEEeccCccccccCCCCCCCCCCCCccC
Q 036345 661 LVNLRHLMISHNVYLDYMPKGIERLTCLRTLR 692 (954)
Q Consensus 661 l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 692 (954)
+++|+.|++++|. +..+|..++.+..|++|.
T Consensus 185 ~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 185 LSNLNNLDLSGNK-ISDLPPEIELLSALEELD 215 (394)
T ss_pred hhhhhheeccCCc-cccCchhhhhhhhhhhhh
Confidence 8888888888874 466666555555555553
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=2.2e-06 Score=100.20 Aligned_cols=184 Identities=16% Similarity=0.187 Sum_probs=115.6
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccccc-------------------ccce
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMN-------------------SFEI 231 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~ 231 (954)
-.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++.-.-.. .|.-
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce
Confidence 3579999999999988886432 345568999999999999999987421110 0111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcE
Q 036345 232 RMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSK 310 (954)
Q Consensus 232 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 310 (954)
++++..+....+ .++..+...+.. ...+++-++|||++.......++.|...+.......+
T Consensus 90 viEidAas~~kV------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 90 LIEVDAASRTKV------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred EEEeccccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 122221111111 112222222211 2246777999999987777788888877766555666
Q ss_pred EEEecCc-hhHHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 311 ILVTTRK-KTVAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 311 iiiTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
+|++|.+ ..+... ......|++++|+.++...++.+.+-.... . .-.+....|++.++|.|-.+..+
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~---~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-P---FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 6665544 444322 233578999999999999999886633221 1 12456677999999988655444
No 57
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.50 E-value=1.5e-07 Score=93.75 Aligned_cols=47 Identities=28% Similarity=0.385 Sum_probs=32.4
Q ss_pred ceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 173 EVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
+|+||+++++++...+.... ....+++.|+|++|+|||+|++.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~---~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ---SGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS---S-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH---cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999996222 346789999999999999999998884
No 58
>PF13173 AAA_14: AAA domain
Probab=98.50 E-value=3.9e-07 Score=84.06 Aligned_cols=119 Identities=24% Similarity=0.267 Sum_probs=77.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCce
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKK 279 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 279 (954)
+++.|.|+.|+|||||+++++.+.. ....+++++.......... ..+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccCC
Confidence 5899999999999999999987422 2345667765542211000 000 2233333333477
Q ss_pred eEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHHhh------hcCcceEeCCCCCHHHH
Q 036345 280 FLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQM------MESTDVFSIKELSKQEC 340 (954)
Q Consensus 280 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~------~~~~~~~~l~~L~~~~~ 340 (954)
.+|+||++.. ...|......+.+..+..+|++|+........ .+....++|.||+-.|.
T Consensus 63 ~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 8899999944 45787766666655567899999988765532 12245789999998774
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=2.8e-06 Score=96.43 Aligned_cols=183 Identities=15% Similarity=0.169 Sum_probs=114.3
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc-------------------cccce
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM-------------------NSFEI 231 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~ 231 (954)
-.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++.-... +.|.-
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence 3579999999999999987432 35678999999999999999887631100 01111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcE
Q 036345 232 RMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSK 310 (954)
Q Consensus 232 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 310 (954)
++.+..+....+ .++.++...... ...+++-++|+|++..-+...+..+...+.....+.+
T Consensus 89 viEIDAAs~~~V------------------ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~ 150 (702)
T PRK14960 89 LIEIDAASRTKV------------------EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVK 150 (702)
T ss_pred eEEecccccCCH------------------HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcE
Confidence 122222111111 111111111111 1235667899999977666677778777766556677
Q ss_pred EEEecCch-hHHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 036345 311 ILVTTRKK-TVAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKT 380 (954)
Q Consensus 311 iiiTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 380 (954)
+|++|.+. .+... ......+++++++.++..+.+.+.+...+.... .+....|++.++|.+..+..
T Consensus 151 FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 151 FLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred EEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 87777653 22222 233568999999999999998876644332222 44566799999997755443
No 60
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=2e-08 Score=99.48 Aligned_cols=63 Identities=30% Similarity=0.196 Sum_probs=47.5
Q ss_pred CCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCC--CcCCCCCCCCCCceEeecCCCCceEeC
Q 036345 774 NPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKC--EIMPPLGKLPSLEVLSIWNMNSVKTVG 839 (954)
Q Consensus 774 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~--~~l~~l~~l~~L~~L~L~~~~~l~~~~ 839 (954)
+.|++.|.+++|.+.+ -+.+..+-+|..|++++|.+. +....+|+||.|++|.|.+|+ +..++
T Consensus 351 LGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred hcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 4577888888887665 345667778889999988754 345678999999999999998 44444
No 61
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.48 E-value=1.4e-07 Score=90.46 Aligned_cols=124 Identities=28% Similarity=0.275 Sum_probs=53.7
Q ss_pred CCceEEEEEEeccccCCccccc-ccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhh-
Q 036345 534 KEKLYHLMLMINLFSTFPVSIR-YAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEI- 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i- 611 (954)
+.+.+.|++.++.++.+ ..+. .+.+|+.|++++|. +.. ++ .+..++.|+.|++++| .+..+++.+
T Consensus 18 ~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~----I~~-l~-~l~~L~~L~~L~L~~N------~I~~i~~~l~ 84 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQ----ITK-LE-GLPGLPRLKTLDLSNN------RISSISEGLD 84 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS------S---T-T----TT--EEE--SS---------S-CHHHH
T ss_pred ccccccccccccccccc-cchhhhhcCCCEEECCCCC----Ccc-cc-CccChhhhhhcccCCC------CCCccccchH
Confidence 45678999999998874 3444 57899999999997 443 22 3678999999999999 788886655
Q ss_pred hccCcCceeeccCccccccc--ccccCCCCccEEeccccCCCccccc----cccCCCCCCEEeccC
Q 036345 612 EKLKHLRFLKLSQVDLEELP--ETCCELVNLQTLDIEACGSLKRLPQ----GIGKLVNLRHLMISH 671 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~l~~ 671 (954)
..+++|+.|+|++|.|..+- ..+..+++|+.|++.+|+ +...+. .+..+++|+.||-..
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 46999999999999988553 456789999999999998 554443 367899999998643
No 62
>PTZ00202 tuzin; Provisional
Probab=98.48 E-value=5e-06 Score=88.67 Aligned_cols=168 Identities=15% Similarity=0.191 Sum_probs=107.9
Q ss_pred ccccCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHH
Q 036345 167 ALINVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRV 246 (954)
Q Consensus 167 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 246 (954)
.+.+.+.|+||+.+..++...|...+. ...+++.|+|++|+|||||++.+..... + ...+++.. +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHH
Confidence 345667899999999999999975442 3456999999999999999999987422 1 12233322 67999
Q ss_pred HHHHHHHhhcCCCCcc--cHHHHHHHHHHHh-c-CceeEEEecCCCCCCccChhhHH---hhhcCCCCCcEEEEecCchh
Q 036345 247 ARAIIEALEGSASNLG--ELQSLLQRIQTSI-A-GKKFLLVLDDMWTDDYSKWEPFN---NCLMNGLRGSKILVTTRKKT 319 (954)
Q Consensus 247 ~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l-~-~kr~LlVlDdvw~~~~~~~~~l~---~~l~~~~~gs~iiiTtr~~~ 319 (954)
+..++.+|+.+..... -.+.+.+.+.+.- . +++.+||+-==.- +....+. ..|.....-|+|++---.+.
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg---~~l~rvyne~v~la~drr~ch~v~evples 402 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREG---SSLQRVYNEVVALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC---CcHHHHHHHHHHHHccchhheeeeeehHhh
Confidence 9999999997432221 1233344443322 2 6777777653211 1222221 22445556788888665554
Q ss_pred HHhhh---cCcceEeCCCCCHHHHHHHHHHHH
Q 036345 320 VAQMM---ESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 320 v~~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
..-.. ..-..|.+..++.++|.++-.+..
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 32221 224578999999999999887753
No 63
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.47 E-value=3.2e-06 Score=93.23 Aligned_cols=198 Identities=13% Similarity=0.070 Sum_probs=108.4
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccc-eEEEEEeCCCCCH-HHHHH-
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFE-IRMWVCVSDPFDE-FRVAR- 248 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~-~~~~~- 248 (954)
.+++|++..++.+..++..+ ....+.++|+.|+||||+|+.+.+.-. ...+. ..+.++++.-.+. ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 56899999999998888632 334578999999999999999877421 11111 1234443321100 00000
Q ss_pred --HHHHHhhcC-CCCcccHHHHHHHHHHH---h--cCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchh-
Q 036345 249 --AIIEALEGS-ASNLGELQSLLQRIQTS---I--AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKT- 319 (954)
Q Consensus 249 --~i~~~l~~~-~~~~~~~~~~~~~l~~~---l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~- 319 (954)
.....++.. .......+.....+... . .+.+-+||+||+..-.......+...+......+++|+||....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 00000111111112111 1 13445899999954443344556665554445577887775432
Q ss_pred HHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 036345 320 VAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKT 380 (954)
Q Consensus 320 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 380 (954)
+...+ .....+++.+++.++...++.+.+......- -.+..+.+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY----DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 22222 2245788999999999999988654322211 145667788999887765543
No 64
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.46 E-value=3.7e-06 Score=98.35 Aligned_cols=203 Identities=17% Similarity=0.156 Sum_probs=120.0
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccccccc---ceEEEEEeCCC---CCHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSF---EIRMWVCVSDP---FDEFR 245 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~---~~~~~ 245 (954)
++++|++..+..+...+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 56899999999888777432 34469999999999999999998753322222 12345544321 12222
Q ss_pred HHHHH---------------HHHhhcCCC----------------Cccc-HHHHHHHHHHHhcCceeEEEecCCCCCCcc
Q 036345 246 VARAI---------------IEALEGSAS----------------NLGE-LQSLLQRIQTSIAGKKFLLVLDDMWTDDYS 293 (954)
Q Consensus 246 ~~~~i---------------~~~l~~~~~----------------~~~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~ 293 (954)
+...+ +...+.... .... ....+..+.+.++.+++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 111111000 0011 123567788888899999998888877777
Q ss_pred ChhhHHhhhcCCCCCcEEEE--ecCchhH-Hhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHH
Q 036345 294 KWEPFNNCLMNGLRGSKILV--TTRKKTV-AQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVS 369 (954)
Q Consensus 294 ~~~~l~~~l~~~~~gs~iii--Ttr~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~ 369 (954)
.|+.+...+....+...|++ ||++... ...+ .....+.+.+++.++.+.++.+.+-.... ... .++.+.|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls---~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLA---AGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHH
Confidence 78888776666655555555 5664431 1111 22347789999999999999987642211 111 334444555
Q ss_pred hcCCChHHHHHHHhh
Q 036345 370 RCKGLPLAAKTIGSL 384 (954)
Q Consensus 370 ~c~glPlai~~~~~~ 384 (954)
.+..-+-|+..++.+
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 554445555555443
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.44 E-value=5.4e-09 Score=108.60 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=96.3
Q ss_pred CCCCCCCEEEEeeecCCCCCCcch-h-cccCccEEEEeCcCCCCc--CCCC-CCCCCCceEeecCCCCceEeCcccccCC
Q 036345 772 RPNPNIEVLKIFQYKGKTVFPSWI-M-SLCKLKVLLLSFCIKCEI--MPPL-GKLPSLEVLSIWNMNSVKTVGDEFLGIG 846 (954)
Q Consensus 772 ~~~~~L~~L~l~~~~~~~~lp~~~-~-~l~~L~~L~L~~c~~~~~--l~~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 846 (954)
..+..|+.|+.+++...++.+-|- + +.++|+.|.|..|..... +..+ .+++.|+.+++.+|..+..- ++...
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sl- 367 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASL- 367 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhh-
Confidence 345566777776665543333221 1 567788888887774332 2223 36778888888777633211 11111
Q ss_pred CCCCCCcCCcccccCcccceeecccccccccccccc-ccccccccccceecccccccCcC-CCCCCCCCCCcceEEEecC
Q 036345 847 GDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGE-EDNITVMPQLNSLKIENCSKLKS-LPDQLLRSTTLENLEIKKC 924 (954)
Q Consensus 847 ~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~-~~~~~~~p~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c 924 (954)
..++|.|++|.+++|...++-.... ......+..|+.+.+.+||.+.. .-..+..+++|+.+++.+|
T Consensus 368 -----------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 368 -----------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred -----------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 2378888888888777655431110 12223577899999999987652 2223456889999999999
Q ss_pred cchhhhhccCCCCCccccccccccccC
Q 036345 925 PIVKESFRRYTREDWSKMFHIPNILID 951 (954)
Q Consensus 925 ~~l~~~~~~~~~~~~~~i~~ip~i~i~ 951 (954)
..+++.--. +..+|.|+|.++
T Consensus 437 q~vtk~~i~------~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 437 QDVTKEAIS------RFATHLPNIKVH 457 (483)
T ss_pred hhhhhhhhH------HHHhhCccceeh
Confidence 887654211 235678888775
No 66
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=3.6e-06 Score=95.25 Aligned_cols=181 Identities=14% Similarity=0.166 Sum_probs=113.6
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc------------------------
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM------------------------ 226 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------------ 226 (954)
-.++||.+..++.|...+.... -...+.++|..|+||||+|+.+.+.-.-.
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA 89 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence 3579999999999999887532 34567899999999999998886531100
Q ss_pred cccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHH----hcCceeEEEecCCCCCCccChhhHHhhh
Q 036345 227 NSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTS----IAGKKFLLVLDDMWTDDYSKWEPFNNCL 302 (954)
Q Consensus 227 ~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l 302 (954)
+.|..+++++.+.. ..++++.+.+... ..++.-++|||++...+...++.|...+
T Consensus 90 G~hpDviEIdAas~---------------------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTL 148 (700)
T PRK12323 90 GRFVDYIEMDAASN---------------------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTL 148 (700)
T ss_pred CCCCcceEeccccc---------------------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhh
Confidence 01111222222111 1122222222221 2456669999999877777788887777
Q ss_pred cCCCCCcEEEEec-CchhHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 036345 303 MNGLRGSKILVTT-RKKTVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKT 380 (954)
Q Consensus 303 ~~~~~gs~iiiTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 380 (954)
.....++++|++| ....+...+ .....+.++.++.++..+.+.+.+........ .+..+.|++.++|.|.....
T Consensus 149 EEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 149 EEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred ccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 6654556655555 444444332 23568999999999999988876533221111 34457799999999975544
Q ss_pred H
Q 036345 381 I 381 (954)
Q Consensus 381 ~ 381 (954)
+
T Consensus 225 L 225 (700)
T PRK12323 225 L 225 (700)
T ss_pred H
Confidence 4
No 67
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.43 E-value=1.2e-06 Score=83.66 Aligned_cols=125 Identities=18% Similarity=0.138 Sum_probs=72.5
Q ss_pred eechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHh
Q 036345 175 RGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEAL 254 (954)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 254 (954)
+|++..++.+...+... ..+.+.|+|++|+||||+++.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 37788888888887642 345789999999999999999998421 222345666655433222211111000
Q ss_pred hcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCC------CCCcEEEEecCchh
Q 036345 255 EGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNG------LRGSKILVTTRKKT 319 (954)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------~~gs~iiiTtr~~~ 319 (954)
............++.++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0111112223456789999999753222233343333332 35778888887654
No 68
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=7e-06 Score=92.72 Aligned_cols=180 Identities=15% Similarity=0.207 Sum_probs=112.3
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccc----------c------------
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNS----------F------------ 229 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----------f------------ 229 (954)
.+++|-+..+..+...+.... -...+.++|+.|+||||+|+.+++.-..... +
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 568999998888887775432 3457889999999999999998763111000 0
Q ss_pred -ceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCC
Q 036345 230 -EIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLR 307 (954)
Q Consensus 230 -~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 307 (954)
..++.+....... ..++.++.+.... ...+++-++|+|+++.-....|..+...+.....
T Consensus 96 h~Dv~eidaas~~~------------------vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~ 157 (507)
T PRK06645 96 HPDIIEIDAASKTS------------------VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPP 157 (507)
T ss_pred CCcEEEeeccCCCC------------------HHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCC
Confidence 0011111111111 1112222221111 1245677899999987777778888887776556
Q ss_pred CcEEEE-ecCchhHHhhhc-CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 036345 308 GSKILV-TTRKKTVAQMME-STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAA 378 (954)
Q Consensus 308 gs~iii-Ttr~~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 378 (954)
.+++|+ ||+...+...+. ....+++++++.++....+.+.+...+...+ .+....|++.++|.+.-+
T Consensus 158 ~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 158 HIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred CEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 666665 545555544332 3467999999999999999987754332111 345566999999977544
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.42 E-value=1.9e-07 Score=105.30 Aligned_cols=138 Identities=28% Similarity=0.378 Sum_probs=105.0
Q ss_pred EEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCC-ceeEEEecCCCccccccccccchhhhccCcCc
Q 036345 540 LMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLT-FLRTLKITGESAGVEKSIREIPKEIEKLKHLR 618 (954)
Q Consensus 540 L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~ 618 (954)
+....+.+...+..+...+.++.|.+.++. +.. ++.....+. +|+.|+++++ .+..+|..++++++|+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~----i~~-i~~~~~~~~~nL~~L~l~~N------~i~~l~~~~~~l~~L~ 166 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNN----ITD-IPPLIGLLKSNLKELDLSDN------KIESLPSPLRNLPNLK 166 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcc----ccc-Cccccccchhhccccccccc------chhhhhhhhhcccccc
Confidence 444444442234445566789999998886 443 344345564 8999999999 8888988899999999
Q ss_pred eeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCc
Q 036345 619 FLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRT 690 (954)
Q Consensus 619 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 690 (954)
.|++++|.+..+|...+.+.+|+.|+++++. +..+|..+..+..|+.|.+++|.. ...+..+.++.++..
T Consensus 167 ~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~ 236 (394)
T COG4886 167 NLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSG 236 (394)
T ss_pred ccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccc
Confidence 9999999999999998899999999999988 999998877788899999998842 234444444444433
No 70
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=5.7e-06 Score=94.04 Aligned_cols=187 Identities=20% Similarity=0.184 Sum_probs=114.8
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcc----c---------------ccccce
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDND----V---------------MNSFEI 231 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~----~---------------~~~f~~ 231 (954)
-.+++|.+..++.+...+... .....+.++|+.|+||||+|+.+++.-. . ...|..
T Consensus 15 f~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 357899999999999888642 2345678999999999999998876210 0 011222
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcE
Q 036345 232 RMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSK 310 (954)
Q Consensus 232 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 310 (954)
.+++.......++ +...+...+.. ...+++-++|+|++...+...++.+...+......+.
T Consensus 90 lieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 90 LIEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred eEEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 2333322222211 12222222221 1245667999999977666778888888776555666
Q ss_pred EEE-ecCchhHHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHHHhh
Q 036345 311 ILV-TTRKKTVAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPL-AAKTIGSL 384 (954)
Q Consensus 311 iii-Ttr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~~ 384 (954)
+|+ ||....+... ......+++++++.++....+.+.+-..+-.. -.+....|++.++|.+- |+..+-.+
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~----e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS----DEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 665 4444444322 23357899999999998888877553322111 14455679999999664 55544433
No 71
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.42 E-value=2.8e-08 Score=101.25 Aligned_cols=93 Identities=22% Similarity=0.240 Sum_probs=55.9
Q ss_pred cccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-------hhccCcCceeeccCccc
Q 036345 555 RYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-------IEKLKHLRFLKLSQVDL 627 (954)
Q Consensus 555 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-------i~~L~~L~~L~L~~~~i 627 (954)
.....++.+++++|.........+...+.+.+.||.-++++-..+. ...++|+. +-..++|++|+||+|.+
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR--~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGR--LKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCC--cHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3455666777777652222223344456666777777777654331 22334443 33556888888888875
Q ss_pred c-----cccccccCCCCccEEeccccC
Q 036345 628 E-----ELPETCCELVNLQTLDIEACG 649 (954)
Q Consensus 628 ~-----~lp~~i~~L~~L~~L~L~~~~ 649 (954)
. .+-.-+.++..|+.|.|.+|.
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC
Confidence 4 333446677888888888876
No 72
>PLN03025 replication factor C subunit; Provisional
Probab=98.40 E-value=5.2e-06 Score=89.96 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=106.2
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccce-EEEEEeCCCCCHHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEI-RMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i 250 (954)
.+++|.+..++.|..++... ....+.++|++|+||||+|+.+++.- ....|.. ++-+..+...... .++++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 56889988888888776532 33457799999999999999988731 1112221 1122222222211 22222
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCch-hHHhhh-cCcc
Q 036345 251 IEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKK-TVAQMM-ESTD 328 (954)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~~-~~~~ 328 (954)
++.+...... .-.++.-++|+|++..-.......+...+......+++++++... .+...+ ....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2221110000 002456699999997655555566666665445567777766442 222211 2245
Q ss_pred eEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 036345 329 VFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAA 378 (954)
Q Consensus 329 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 378 (954)
.++++++++++....+...+-..+-.-. .+....|++.++|..-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 7999999999999998887643322112 345677999999876444
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.40 E-value=1.4e-08 Score=105.61 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=91.3
Q ss_pred cccCccEEEEeCcCCCCcCC--CC-CCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccc
Q 036345 797 SLCKLKVLLLSFCIKCEIMP--PL-GKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLY 873 (954)
Q Consensus 797 ~l~~L~~L~L~~c~~~~~l~--~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 873 (954)
.+..|+.|+.++|......+ .| .+.++|+.|.+.+|..+...+...++- +++.|+.+.+.+|.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r--------------n~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR--------------NCPHLERLDLEECG 357 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc--------------CChhhhhhcccccc
Confidence 57889999999997654432 23 478999999999999876666554432 78999999999987
Q ss_pred cccccccccccccccccccceecccccccCcCC-----CCCCCCCCCcceEEEecCcchhhhhccC
Q 036345 874 EWEEWDFGEEDNITVMPQLNSLKIENCSKLKSL-----PDQLLRSTTLENLEIKKCPIVKESFRRY 934 (954)
Q Consensus 874 ~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~l-----p~~~~~l~~L~~L~l~~c~~l~~~~~~~ 934 (954)
...+-... .....+|.|++|.++.|..++.- ..+...+..|..+++.+||.+++...+.
T Consensus 358 ~~~d~tL~--sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~ 421 (483)
T KOG4341|consen 358 LITDGTLA--SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH 421 (483)
T ss_pred eehhhhHh--hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH
Confidence 65554333 22348999999999999876533 3333456789999999999999886553
No 74
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=5.1e-08 Score=102.07 Aligned_cols=147 Identities=20% Similarity=0.166 Sum_probs=86.7
Q ss_pred CCceEEEEEEeccccCCc--ccccccCcceEEEeeccCCccccCCC--chhhhcCCCceeEEEecCCCccccccccccch
Q 036345 534 KEKLYHLMLMINLFSTFP--VSIRYAKKLRSLFLVANGSFKVLSPV--LPGLFDQLTFLRTLKITGESAGVEKSIREIPK 609 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~--~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~ 609 (954)
.+++|.+++.+......+ .....|+++|.|+++.|- +..+ +..+...+++|+.|+|+.| .+....+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL----~~nw~~v~~i~eqLp~Le~LNls~N------rl~~~~~ 189 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL----FHNWFPVLKIAEQLPSLENLNLSSN------RLSNFIS 189 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhh----HHhHHHHHHHHHhcccchhcccccc------cccCCcc
Confidence 456677777766665433 245678888888888774 1111 2344577888888888877 3322211
Q ss_pred h--hhccCcCceeeccCcccc--cccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCC--CCCC
Q 036345 610 E--IEKLKHLRFLKLSQVDLE--ELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMP--KGIE 683 (954)
Q Consensus 610 ~--i~~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p--~~i~ 683 (954)
+ -..+.||+.|.|+.|.++ .+-.....+++|+.|+|.+|..+..--.....+..|+.|++++|+.+ .++ ..++
T Consensus 190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~ 268 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVG 268 (505)
T ss_pred ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccc
Confidence 1 225677888888888776 33334456678888888877433322223345667888888877543 333 2234
Q ss_pred CCCCCCcc
Q 036345 684 RLTCLRTL 691 (954)
Q Consensus 684 ~L~~L~~L 691 (954)
.++.|..|
T Consensus 269 ~l~~L~~L 276 (505)
T KOG3207|consen 269 TLPGLNQL 276 (505)
T ss_pred cccchhhh
Confidence 44444444
No 75
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=2.8e-06 Score=93.82 Aligned_cols=197 Identities=13% Similarity=0.107 Sum_probs=113.2
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
-.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+++.-.-. .... ...+........+...+
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~ 88 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGI 88 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccC
Confidence 3578999988998888886432 23568999999999999999997731110 0000 00000000111111111
Q ss_pred HHHhh---c-CCCCcccHHHHHHHHHHH-hcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEec-CchhHHhhh
Q 036345 251 IEALE---G-SASNLGELQSLLQRIQTS-IAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTT-RKKTVAQMM 324 (954)
Q Consensus 251 ~~~l~---~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~~v~~~~ 324 (954)
...+. . ...+..++.++.+.+... ..++.-++|+|+++.-+...++.+...+........+|++| ....+...+
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 00000 0 001112222333333221 24566799999998777777888877775544455555455 444443332
Q ss_pred -cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHH
Q 036345 325 -ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAK 379 (954)
Q Consensus 325 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 379 (954)
.....|.+++++.++..+.+.+.+...+..- -.+....|++.++|.+.-+.
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~----e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY----DQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCChHHHHH
Confidence 3356799999999999998888664332211 14556779999999885443
No 76
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.36 E-value=5.9e-07 Score=91.95 Aligned_cols=90 Identities=20% Similarity=0.128 Sum_probs=62.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCC--CCHHHHHHHHHHHhhcCCCCcccHH------HHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDP--FDEFRVARAIIEALEGSASNLGELQ------SLLQ 269 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 269 (954)
....++|+|++|+|||||++.++++.... +|+.++|+.+.++ +++.++++.+...+-....+..... ...+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999975444 8999999998777 8999999998333322211211111 1222
Q ss_pred HHHHH-hcCceeEEEecCCC
Q 036345 270 RIQTS-IAGKKFLLVLDDMW 288 (954)
Q Consensus 270 ~l~~~-l~~kr~LlVlDdvw 288 (954)
..... -.++++++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 25899999999993
No 77
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.36 E-value=9.3e-06 Score=88.76 Aligned_cols=181 Identities=16% Similarity=0.111 Sum_probs=106.2
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEe--CCCCCHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCV--SDPFDEFRVARA 249 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~ 249 (954)
.+++|++..++.+..++... ....+.++|+.|+||||+|+.+++.- ....+.. .++.. +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccchH-HHHH
Confidence 56899999999999988642 23357999999999999999998741 1111211 12222 2211111 1112
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCch-hHHhhh-cCc
Q 036345 250 IIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKK-TVAQMM-EST 327 (954)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~~-~~~ 327 (954)
.+..+....+ .....+-+|++|++..-.......+...+......+++|+++... .+.... ...
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111111000 001235689999985544444556666665555566777776432 221111 223
Q ss_pred ceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHH
Q 036345 328 DVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAK 379 (954)
Q Consensus 328 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 379 (954)
..+++.+++.++....+.+.+....-.-. .+....+++.++|.+..+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 47899999999999988887643322111 4456778999999876643
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=9.5e-06 Score=91.38 Aligned_cols=201 Identities=20% Similarity=0.209 Sum_probs=114.7
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccccc-------------------ccce
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMN-------------------SFEI 231 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~ 231 (954)
-.+++|.+...+.|...+... .-...+.++|++|+||||+|+.+++.-.... .+..
T Consensus 13 ~~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 357999988888887777642 2345688999999999999999876311100 0011
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcE
Q 036345 232 RMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSK 310 (954)
Q Consensus 232 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 310 (954)
+..+..+.......+ ++|.+. ... ...+++-++|+|+++.-.....+.+...+........
T Consensus 88 v~el~aa~~~gid~i-R~i~~~-----------------~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 88 VIELDAASNRGIDEI-RKIRDA-----------------VGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred cEEEeCcccCCHHHH-HHHHHH-----------------HhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 222222211111111 111111 110 1235667999999965444455666666655444455
Q ss_pred EEEecCc-hhHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCC-ChHHHHHHHhhhcC
Q 036345 311 ILVTTRK-KTVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKG-LPLAAKTIGSLLRF 387 (954)
Q Consensus 311 iiiTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~~l~~ 387 (954)
+|++|.+ ..+...+ .....+++.+++.++....+.+.+......-. .+....|++.++| .+.++..+-.+...
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~~~ 225 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVWKF 225 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5544433 3443332 23568999999999999988887643222111 4456678887865 56777776654432
Q ss_pred ---CCCHHHHHHHH
Q 036345 388 ---KKTREEWQRIL 398 (954)
Q Consensus 388 ---~~~~~~w~~~l 398 (954)
+-+.+....++
T Consensus 226 ~~~~It~e~V~~~l 239 (472)
T PRK14962 226 SEGKITLETVHEAL 239 (472)
T ss_pred cCCCCCHHHHHHHH
Confidence 12445555444
No 79
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=6.2e-06 Score=95.16 Aligned_cols=195 Identities=17% Similarity=0.242 Sum_probs=114.3
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
-.++||.+..++.|...+.... -...+.++|+.|+||||+|+.+++.---...+. ...+..-..-+.|
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i 82 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREI 82 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHH
Confidence 3679999999999988886432 345578999999999999998876311100000 0000000111111
Q ss_pred HHH-------hhcC-CCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCc-hhH
Q 036345 251 IEA-------LEGS-ASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRK-KTV 320 (954)
Q Consensus 251 ~~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v 320 (954)
... +... .....++.++...+.. ...+++-++|||+++.-+...++.|...+.......++|++|.+ ..+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 100 0000 0011122222222221 12466779999999877777888888877765556666665554 444
Q ss_pred Hhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 321 AQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 321 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
... ......+++++++.++....+.+..-......+ .+....|++.++|.+-.+..+
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 322 223578999999999999999876532221111 345567999999988755444
No 80
>PRK08727 hypothetical protein; Validated
Probab=98.35 E-value=1.2e-05 Score=82.46 Aligned_cols=148 Identities=14% Similarity=0.055 Sum_probs=89.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCce
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKK 279 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 279 (954)
..+.|+|..|+|||+|++.+++. .......+.++++.+ ....+. ..+..+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~~l--~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DALEAL--EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHHHHH--hcC
Confidence 45999999999999999999874 333334556666432 111110 111111 233
Q ss_pred eEEEecCCCCCC-ccChhh-HHhhhcC-CCCCcEEEEecCch---------hHHhhhcCcceEeCCCCCHHHHHHHHHHH
Q 036345 280 FLLVLDDMWTDD-YSKWEP-FNNCLMN-GLRGSKILVTTRKK---------TVAQMMESTDVFSIKELSKQECWSLFKRF 347 (954)
Q Consensus 280 ~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~iiiTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 347 (954)
-+||+||+.... ...|.. +...+.. ...|..||+|++.. .+.+.+.....+++++++.++..+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999995321 123433 3333322 13466799999753 22223344568999999999999999987
Q ss_pred HcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 036345 348 AFFGRHPSECEQLEEIGRKIVSRCKGLPLAA 378 (954)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 378 (954)
+....-. --+++...|++.++|-.-.+
T Consensus 175 a~~~~l~----l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGLA----LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCCC----CCHHHHHHHHHhCCCCHHHH
Confidence 6542211 12456667888888766554
No 81
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.34 E-value=4.6e-06 Score=98.40 Aligned_cols=173 Identities=20% Similarity=0.287 Sum_probs=98.3
Q ss_pred Cceeechhhhh---HHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 172 SEVRGRDEEKN---SLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 172 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
.+++|.+..+. .+...+.. +....+.++|++|+||||||+.+++. ...+|.. ++.+. ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~~---lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFSS---LNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCccee---ehhhh-hhh-----
Confidence 56889887764 45555542 24456789999999999999999984 3333311 11110 000
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHHh--cCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEe--cCchh--HHh
Q 036345 249 AIIEALEGSASNLGELQSLLQRIQTSI--AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVT--TRKKT--VAQ 322 (954)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiT--tr~~~--v~~ 322 (954)
.+.........+.+ .+++.++||||++.-+...++.+...+. .|+.++|+ |.+.. +..
T Consensus 91 -------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 91 -------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred -------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 01111112222222 2567799999997655555666654443 35555553 34331 222
Q ss_pred h-hcCcceEeCCCCCHHHHHHHHHHHHcCCC---CCCCchhHHHHHHHHHHhcCCChHH
Q 036345 323 M-MESTDVFSIKELSKQECWSLFKRFAFFGR---HPSECEQLEEIGRKIVSRCKGLPLA 377 (954)
Q Consensus 323 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~---~~~~~~~~~~~~~~i~~~c~glPla 377 (954)
. ......+.+++++.++...++.+.+-... ......--.+....|++.+.|..-.
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 1 12245799999999999999987653100 0000111245567788888886543
No 82
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.31 E-value=1.4e-05 Score=82.17 Aligned_cols=206 Identities=22% Similarity=0.200 Sum_probs=124.7
Q ss_pred Cceeech---hhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccc----ccccceEEEEEeCCCCCHH
Q 036345 172 SEVRGRD---EEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDV----MNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 172 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~ 244 (954)
+.++|-. ..++++.+++..+. ......+.|||.+|.|||++++++.+..-. ...--.++.|......+..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 4455643 34666677776654 346677999999999999999998754111 1111246778888899999
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCc-eeEEEecCCCCC---CccChhhHHhh---hcCCCCCcEEEEecCc
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRIQTSIAGK-KFLLVLDDMWTD---DYSKWEPFNNC---LMNGLRGSKILVTTRK 317 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~---~~~~~~~l~~~---l~~~~~gs~iiiTtr~ 317 (954)
.++..|+.+++...........+.......++.- -=+||+|++++- ...+-..+... +.+.-.=+-|.+-|+.
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 9999999999988666666666665555666432 348899999652 11122223333 3333344566666655
Q ss_pred hhHHhhh-----cCcceEeCCCCCHH-HHHHHHHHHH--cCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 318 KTVAQMM-----ESTDVFSIKELSKQ-ECWSLFKRFA--FFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 318 ~~v~~~~-----~~~~~~~l~~L~~~-~~~~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
.--+-.. +-..++.++....+ +...|+.... ..-..++. -...++++.|...++|+.--+..+
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHHHHH
Confidence 4322111 11346666666654 4555554422 11122222 234788999999999987555433
No 83
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.1e-08 Score=101.28 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=30.2
Q ss_pred CCCCEEEEeeecCCC---CCCcchhcccCccEEEEeCcCCCCc--CCCCCCCCCCceEeecCCC
Q 036345 775 PNIEVLKIFQYKGKT---VFPSWIMSLCKLKVLLLSFCIKCEI--MPPLGKLPSLEVLSIWNMN 833 (954)
Q Consensus 775 ~~L~~L~l~~~~~~~---~lp~~~~~l~~L~~L~L~~c~~~~~--l~~l~~l~~L~~L~L~~~~ 833 (954)
++|..|+|+||.-.- .+..-...+++|..|+|++|-..+. ...+-+++.|++|.++.|.
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 456666666653211 0111111466667777766653332 2224566666666666665
No 84
>PLN03150 hypothetical protein; Provisional
Probab=98.31 E-value=1.1e-06 Score=103.71 Aligned_cols=90 Identities=24% Similarity=0.461 Sum_probs=56.0
Q ss_pred eeEEEecCCCccccccc-cccchhhhccCcCceeeccCcccc-cccccccCCCCccEEeccccCCCccccccccCCCCCC
Q 036345 588 LRTLKITGESAGVEKSI-REIPKEIEKLKHLRFLKLSQVDLE-ELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLR 665 (954)
Q Consensus 588 Lr~L~L~~~~~~~~~~l-~~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 665 (954)
++.|+|+++ .+ ..+|..+++|++|++|+|++|.+. .+|..++.+.+|++|+|++|.....+|..+++|++|+
T Consensus 420 v~~L~L~~n------~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQ------GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEECCCC------CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 566666666 33 245666666666666666666665 5666666666666666666664445666666666666
Q ss_pred EEeccCccccccCCCCCC
Q 036345 666 HLMISHNVYLDYMPKGIE 683 (954)
Q Consensus 666 ~L~l~~~~~~~~~p~~i~ 683 (954)
+|++++|.....+|..++
T Consensus 494 ~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALG 511 (623)
T ss_pred EEECcCCcccccCChHHh
Confidence 666666655555665554
No 85
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.7e-05 Score=88.91 Aligned_cols=182 Identities=16% Similarity=0.145 Sum_probs=114.3
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC------ccc-------------ccccce
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND------NDV-------------MNSFEI 231 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~------~~~-------------~~~f~~ 231 (954)
-.++||.+..++.+...+.... -...+.++|+.|+||||+|+.+++. +.. .+.+.-
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 4678999988888888776432 3457899999999999999888651 000 011222
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEE
Q 036345 232 RMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKI 311 (954)
Q Consensus 232 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 311 (954)
++.++.+....+++ .+++++.... .-..+++-++|+|++..-....++.|...+....+.+++
T Consensus 87 v~eidaas~~~vdd-IR~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 87 VIEIDAASNTSVDD-IKVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEEecccCCCHHH-HHHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 34444433333222 2222222111 011355668999999766666677788777766666777
Q ss_pred EEecC-chhHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 036345 312 LVTTR-KKTVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAA 378 (954)
Q Consensus 312 iiTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 378 (954)
|++|. ...+...+ .....+++++++.++....+.+.+...+..-+ .+....|++.++|.+..+
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 76664 34444333 33568999999999999999887654332212 445667999999987644
No 86
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=1.1e-05 Score=92.55 Aligned_cols=184 Identities=15% Similarity=0.159 Sum_probs=111.0
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc-------------------cccce
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM-------------------NSFEI 231 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~ 231 (954)
-.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+.-... +.|..
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 3579999999999999987432 34678999999999999998886631100 00111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcE
Q 036345 232 RMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSK 310 (954)
Q Consensus 232 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 310 (954)
.+.+..+....+ .++.++...... -..+++-++|||++...+......|...+......++
T Consensus 90 vlEidaAs~~gV------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 90 LLEIDAASNTGI------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred eEEEeccccCCH------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 122221111111 111122211111 1235667899999966555556667777765445667
Q ss_pred EEEecCch-hHHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 311 ILVTTRKK-TVAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 311 iiiTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
+|++|.+. .+... .+....+.+++++.++....+.+.+-..+... -.+....|++.++|.+.-+..+
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCHHHHHHH
Confidence 77666543 22222 22345788999999999999988764333211 1455677999999988655443
No 87
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.30 E-value=8.6e-08 Score=95.06 Aligned_cols=126 Identities=29% Similarity=0.372 Sum_probs=61.6
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
|+.+..+++++|.++.+-.+..-.|++|.|++++|. +.. ... +..+++|..|||++| .+.++-..--+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~----i~~-v~n-La~L~~L~~LDLS~N------~Ls~~~Gwh~K 350 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR----IRT-VQN-LAELPQLQLLDLSGN------LLAECVGWHLK 350 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccc----eee-ehh-hhhcccceEeecccc------hhHhhhhhHhh
Confidence 444555555555555555555555555555555554 221 111 444555555555555 33333222223
Q ss_pred cCcCceeeccCcccccccccccCCCCccEEeccccCCCcccc--ccccCCCCCCEEeccCcc
Q 036345 614 LKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLP--QGIGKLVNLRHLMISHNV 673 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~ 673 (954)
|-+.+.|.|+.|.|..+. .+++|+.|..||+++|+ +..+- .+|++|+-|+++.+.+|+
T Consensus 351 LGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hcCEeeeehhhhhHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 444555555555555442 44555555555555554 33332 235555555555555543
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.6e-05 Score=91.70 Aligned_cols=181 Identities=14% Similarity=0.205 Sum_probs=111.4
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc------------------------
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM------------------------ 226 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------------ 226 (954)
-.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+.+.---.
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDS 89 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHc
Confidence 3578998888888888887532 34677999999999999998885421000
Q ss_pred cccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH----HhcCceeEEEecCCCCCCccChhhHHhhh
Q 036345 227 NSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQT----SIAGKKFLLVLDDMWTDDYSKWEPFNNCL 302 (954)
Q Consensus 227 ~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdvw~~~~~~~~~l~~~l 302 (954)
+.+..++++..+.. ..+++..+.+.. -..++.-++|||+++.-+...+..+...+
T Consensus 90 g~h~D~~eldaas~---------------------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtL 148 (618)
T PRK14951 90 GRFVDYTELDAASN---------------------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTL 148 (618)
T ss_pred CCCCceeecCcccc---------------------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhc
Confidence 00111122221111 112222222211 11244558999999877777788887777
Q ss_pred cCCCCCcEEEEec-CchhHHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 036345 303 MNGLRGSKILVTT-RKKTVAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKT 380 (954)
Q Consensus 303 ~~~~~gs~iiiTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 380 (954)
.......++|++| ....+... ......+++++++.++..+.+.+.+...+...+ .+....|++.++|.+..+..
T Consensus 149 EEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 149 EEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALS 224 (618)
T ss_pred ccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 6655566666555 43443322 233578999999999999999876643322111 34567799999997765544
Q ss_pred H
Q 036345 381 I 381 (954)
Q Consensus 381 ~ 381 (954)
+
T Consensus 225 l 225 (618)
T PRK14951 225 L 225 (618)
T ss_pred H
Confidence 3
No 89
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.28 E-value=3.2e-05 Score=85.93 Aligned_cols=185 Identities=15% Similarity=0.157 Sum_probs=111.0
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcc--cc------------------cccc
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDND--VM------------------NSFE 230 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~------------------~~f~ 230 (954)
-.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+.+.-. .. .+++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 357899999999999988643 2346788999999999999987765310 00 1222
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcE
Q 036345 231 IRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSK 310 (954)
Q Consensus 231 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 310 (954)
. +++..+...... .+++++..+... ...+++-++|+|++..-....+..+...+......+.
T Consensus 88 ~-~~~~~~~~~~~~-~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 88 V-IEIDAASNNGVD-DIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred E-EEeeccccCCHH-HHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 2 223222111111 112222221110 1224555899999855444556667776755555667
Q ss_pred EEEecCchh-HHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 036345 311 ILVTTRKKT-VAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIG 382 (954)
Q Consensus 311 iiiTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 382 (954)
+|++|.+.. +...+ .....+++.+++.++..+.+...+-..+..- -.+.+..+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHHH
Confidence 667765443 32222 2345789999999999998888664322111 14567779999999987665443
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.5e-05 Score=90.81 Aligned_cols=184 Identities=14% Similarity=0.115 Sum_probs=112.3
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc-------------------cccce
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM-------------------NSFEI 231 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~ 231 (954)
-.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+.+.---. +.|.-
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 3579999999999999986432 34567899999999999998886631100 11222
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEE
Q 036345 232 RMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKI 311 (954)
Q Consensus 232 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 311 (954)
++.+..+....++++ +++++.+.. ....++.-++|+|+++.-....+..+...+......+++
T Consensus 90 ~~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 90 LFEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 333332222222221 122222111 012355668999999876667777787777765566777
Q ss_pred EEecCc-hhHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 036345 312 LVTTRK-KTVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKT 380 (954)
Q Consensus 312 iiTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 380 (954)
|++|.+ ..+...+ .....+++++++.++....+.+.+-..+.... .+....|++.++|.+..+..
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 766544 3333222 23467899999999988877765533222111 34456789999998865443
No 91
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=9.2e-06 Score=92.31 Aligned_cols=197 Identities=17% Similarity=0.198 Sum_probs=111.0
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
-.+++|++..++.+...+.... ..+.+.++|+.|+||||+|+.+++.-. |.-|... ..+..-...+.+
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~-~~Cg~C~sCr~i 82 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDG-DCCNSCSVCESI 82 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCC-CCCcccHHHHHH
Confidence 4578999999999999886432 346788999999999999998866311 1111110 001111111111
Q ss_pred HHHhh-------cC-CCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEec-CchhH
Q 036345 251 IEALE-------GS-ASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTT-RKKTV 320 (954)
Q Consensus 251 ~~~l~-------~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~~v 320 (954)
..... .. .....++..+...+.. ...+++-++|+|++..-....+..|...+......+.+|++| ....+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 11000 00 0011112222221111 112344469999997655667777877776655556666555 44444
Q ss_pred Hhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHHHh
Q 036345 321 AQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPL-AAKTIGS 383 (954)
Q Consensus 321 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~ 383 (954)
... ......+++.+++.++....+...+...+..-. .+.+..+++.++|.+. |+..+-.
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 332 233568999999999999888876643221111 3456779999999664 4444443
No 92
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=2.7e-05 Score=84.95 Aligned_cols=195 Identities=12% Similarity=0.073 Sum_probs=113.7
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccccc--ccce-E---EEEEeCCCCCHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMN--SFEI-R---MWVCVSDPFDEF 244 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~f~~-~---~wv~~s~~~~~~ 244 (954)
-.+++|.+...+.+.+.+.... -...+.++|+.|+||+|+|..+.+.---.. .... . .-..+.....
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~-- 90 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP-- 90 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh--
Confidence 3579999999999999887532 355788999999999999976654210000 0000 0 0000000000
Q ss_pred HHHHHHHHHhhcC---------C-----CCcccHHHHHHHHHHHh-----cCceeEEEecCCCCCCccChhhHHhhhcCC
Q 036345 245 RVARAIIEALEGS---------A-----SNLGELQSLLQRIQTSI-----AGKKFLLVLDDMWTDDYSKWEPFNNCLMNG 305 (954)
Q Consensus 245 ~~~~~i~~~l~~~---------~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~ 305 (954)
.-+.|...--.+ . ...-.++++. .+.+.+ .+++-++|+||+...+......|...+...
T Consensus 91 -~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 91 -VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred -HHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 011110000000 0 0111233322 233333 256679999999887777888888877765
Q ss_pred CCCcEEEEecCchh-HHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 036345 306 LRGSKILVTTRKKT-VAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIG 382 (954)
Q Consensus 306 ~~gs~iiiTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 382 (954)
..++.+|++|.... +...+ .....+.+.+++.++..+++.+.... .. .+....++..++|.|+.+..+.
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 56667777776553 33222 33568999999999999999875411 11 1122568999999998765543
No 93
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=2.5e-05 Score=85.85 Aligned_cols=183 Identities=11% Similarity=0.089 Sum_probs=109.7
Q ss_pred CceeechhhhhHHHHHhhccCCC----CCCceEEEEEEecCCchHHHHHHHHhcCcccc------------------ccc
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQ----QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM------------------NSF 229 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------~~f 229 (954)
++++|.+..++.|...+..+... ...-..-+.++|+.|+|||++|+.+++.-.-. +.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46899999999999988754310 01134668899999999999998875420000 001
Q ss_pred ceEEEEEeCC-CCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCC
Q 036345 230 EIRMWVCVSD-PFDEFRVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLR 307 (954)
Q Consensus 230 ~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 307 (954)
.-..++.... ...+ .++..+.+.... ...+++-++|+|++...+......+...+.....
T Consensus 85 pD~~~i~~~~~~i~i------------------~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 85 PDVRVVAPEGLSIGV------------------DEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred CCEEEeccccccCCH------------------HHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 1111221110 0111 111122221111 1134556888899977666666777777766556
Q ss_pred CcEEEEecCch-hHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 308 GSKILVTTRKK-TVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 308 gs~iiiTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
+..+|++|.+. .+...+ .....+.+++++.++..+.+..... . . .+.+..++..++|.|.....+
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~-~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----V-D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 67666666553 343332 3356899999999999988875321 1 1 344677999999999765444
No 94
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.23 E-value=2.7e-05 Score=80.12 Aligned_cols=151 Identities=16% Similarity=0.154 Sum_probs=90.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCce
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKK 279 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 279 (954)
..+.|+|+.|+|||+|++.+++. ....-..+.++++..... ...+..+.+ .. -
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~----~~-~ 98 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVLEGM----EQ-L 98 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHHHHh----hh-C
Confidence 47899999999999999998874 222233456666542100 001111111 11 2
Q ss_pred eEEEecCCCCCC-ccChhh-HHhhhcC-CCCC-cEEEEecCch---------hHHhhhcCcceEeCCCCCHHHHHHHHHH
Q 036345 280 FLLVLDDMWTDD-YSKWEP-FNNCLMN-GLRG-SKILVTTRKK---------TVAQMMESTDVFSIKELSKQECWSLFKR 346 (954)
Q Consensus 280 ~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~g-s~iiiTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 346 (954)
-+|++||+.... ...|+. +...+.. -..| .++|+||+.. .....+....++++++++.++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 378999995422 234543 3333322 1123 4789998754 2333455567999999999999999988
Q ss_pred HHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 347 FAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
++.... ... -+++..-|++.+.|..-++..+
T Consensus 179 ~a~~~~-~~l---~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 179 RARLRG-FEL---PEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHcC-CCC---CHHHHHHHHHhhcCCHHHHHHH
Confidence 664322 111 2566777888888876655444
No 95
>PRK09087 hypothetical protein; Validated
Probab=98.23 E-value=1.6e-05 Score=80.86 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=86.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGK 278 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 278 (954)
.+.+.|+|+.|+|||+|++.+++... ..+++.. .+..+++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh---------------------hhc-
Confidence 35689999999999999999887421 1233321 111111111 111
Q ss_pred eeEEEecCCCCCCccChhhHHhhhcC-CCCCcEEEEecCc---------hhHHhhhcCcceEeCCCCCHHHHHHHHHHHH
Q 036345 279 KFLLVLDDMWTDDYSKWEPFNNCLMN-GLRGSKILVTTRK---------KTVAQMMESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 279 r~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iiiTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
-+|++||+.... ..-+.+...+.. ...|..||+|++. +.....+.....+++++++.++-.+++.+.+
T Consensus 89 -~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 278889995321 112334443322 2346779998874 3344445666799999999999999999887
Q ss_pred cCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 036345 349 FFGRHPSECEQLEEIGRKIVSRCKGLPLAAKT 380 (954)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 380 (954)
-...- .. -+++..-|++.+.|..-++..
T Consensus 167 ~~~~~-~l---~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADRQL-YV---DPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHcCC-CC---CHHHHHHHHHHhhhhHHHHHH
Confidence 43221 11 156667788888887766654
No 96
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.23 E-value=4.6e-05 Score=76.13 Aligned_cols=180 Identities=19% Similarity=0.210 Sum_probs=107.0
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
-.+|+|.+.-++++.-.+.+.... ++.+-.+.++|++|.||||||.-+++. ....+. ++.+....-..-+..|
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r-~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaai 97 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKR-GEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAI 97 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhc-CCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHH
Confidence 357999999888887777655432 567889999999999999999999984 332222 1111111111111112
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCC--------CCCcEEE----------
Q 036345 251 IEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNG--------LRGSKIL---------- 312 (954)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~--------~~gs~ii---------- 312 (954)
+.. | .+.=++++|.++.-.+..-+.+...+.+. ++++|.+
T Consensus 98 Lt~---------------------L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 98 LTN---------------------L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred Hhc---------------------C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 221 2 22235566777654432222233322211 3344433
Q ss_pred -EecCchhHHhhhcC--cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHh
Q 036345 313 -VTTRKKTVAQMMES--TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGS 383 (954)
Q Consensus 313 -iTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 383 (954)
-|||.-.+.+-+.. .-+.+++..+.+|-.++..+.+..-.- .--++.+.+|+++..|-|--+.-+-+
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 48887665544332 346789999999999999887732221 12256678899999999976554433
No 97
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.23 E-value=2.1e-05 Score=80.92 Aligned_cols=152 Identities=17% Similarity=0.122 Sum_probs=88.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGK 278 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 278 (954)
...+.|+|..|+|||+||+.+++... ... ....+++..... .. + ... ..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~----~------------------~~~-~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LA----F------------------DFD-PE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HH----H------------------hhc-cc
Confidence 45788999999999999999988421 111 234455543311 00 0 011 23
Q ss_pred eeEEEecCCCCCCccChhhHHhhhcC-CCCCc-EEEEecCchhHHh--------hhcCcceEeCCCCCHHHHHHHHHHHH
Q 036345 279 KFLLVLDDMWTDDYSKWEPFNNCLMN-GLRGS-KILVTTRKKTVAQ--------MMESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 279 r~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs-~iiiTtr~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
.-+||+||+..-+...-..+...+.. ...+. .+|+|++...... .+.....+++.++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 34789999954333333345444432 12344 4667766433211 22234689999999988777776643
Q ss_pred cCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhh
Q 036345 349 FFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLL 385 (954)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 385 (954)
-... ... -+++.+.+++.+.|.+..+..+...+
T Consensus 171 ~~~~-v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERG-LQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcC-CCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2211 111 24566778889999999887766554
No 98
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.22 E-value=4.2e-05 Score=76.06 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=64.6
Q ss_pred CceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCch-hHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCC
Q 036345 277 GKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKK-TVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHP 354 (954)
Q Consensus 277 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 354 (954)
+.+-++|+||+..-....++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 556689999997665666777888777655667777776543 222222 22468999999999999988876 1 1
Q ss_pred CCchhHHHHHHHHHHhcCCChHH
Q 036345 355 SECEQLEEIGRKIVSRCKGLPLA 377 (954)
Q Consensus 355 ~~~~~~~~~~~~i~~~c~glPla 377 (954)
. .+.+..|++.++|.|..
T Consensus 170 -~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -S----EEAAELLLALAGGSPGA 187 (188)
T ss_pred -C----HHHHHHHHHHcCCCccc
Confidence 1 35677899999998853
No 99
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2e-05 Score=87.90 Aligned_cols=201 Identities=12% Similarity=0.159 Sum_probs=111.2
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEE-eCCCCCHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVC-VSDPFDEFRVARA 249 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~ 249 (954)
-.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++.-.-...+....|.. +..++..-..-..
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 3578999988888888886422 345588999999999999988866311111010001110 0000000000011
Q ss_pred HHHHhhc-----CCCCcccHHHHHHHHHHH----hcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEec-Cchh
Q 036345 250 IIEALEG-----SASNLGELQSLLQRIQTS----IAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTT-RKKT 319 (954)
Q Consensus 250 i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~~ 319 (954)
+...... ........+++.+..... ..+++-++|+|++..-....++.+...+....+.+.+|++| +...
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1000000 000111123332221111 23556688999997655567888888777665667766555 4444
Q ss_pred HHhhhc-CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 036345 320 VAQMME-STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKT 380 (954)
Q Consensus 320 v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 380 (954)
+...+. ....++++++++++....+...+-..... --.+.+..|++.++|.+--+..
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~----i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS----VDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 433222 24578999999999988888765322211 1255677899999997754433
No 100
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=1.5e-05 Score=86.27 Aligned_cols=197 Identities=16% Similarity=0.138 Sum_probs=115.8
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc--cccceEEEEEeCCCCCHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM--NSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
...++|-+...+.+...+.... ....+.|+|+.|+||||+|..+.+.---. ..+.... ....+......+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 4578999999999999887532 45578999999999999998776631100 0011110 001111111222
Q ss_pred HHHHH-------hhcC--C-----CCcccHHHHHHHHHHHh-----cCceeEEEecCCCCCCccChhhHHhhhcCCCCCc
Q 036345 249 AIIEA-------LEGS--A-----SNLGELQSLLQRIQTSI-----AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGS 309 (954)
Q Consensus 249 ~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 309 (954)
.+... +... . .....+++.. .+.+.+ .+++-++|+|++...+......+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 22211 0000 0 0111233332 333333 3566799999998777777778877776644455
Q ss_pred EEEEec-CchhHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 036345 310 KILVTT-RKKTVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIG 382 (954)
Q Consensus 310 ~iiiTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 382 (954)
.+|++| +...+.... .....+++.+++.++..+++.+.... . . ...+....|++.++|.|..+..+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~--~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q--G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c--C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555444 443333222 22568999999999999999874311 1 1 113445679999999998766544
No 101
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.20 E-value=2.6e-06 Score=90.62 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=65.2
Q ss_pred HHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC--CHHHHHHHHHHHhhcCCCC
Q 036345 183 SLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF--DEFRVARAIIEALEGSASN 260 (954)
Q Consensus 183 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~ 260 (954)
++++.+..-. .....+|+|++|+||||||+.+|++.... +|+..+||.+.++. .+.++++.+...+-....+
T Consensus 158 rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 4555555322 34567899999999999999999975444 89999999999887 7777777776322222222
Q ss_pred cccHH------HHHHHHHHH-hcCceeEEEecCCC
Q 036345 261 LGELQ------SLLQRIQTS-IAGKKFLLVLDDMW 288 (954)
Q Consensus 261 ~~~~~------~~~~~l~~~-l~~kr~LlVlDdvw 288 (954)
..... ...+.-... -.+++++|++|++.
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 11111 111111111 26899999999994
No 102
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3.3e-05 Score=88.75 Aligned_cols=185 Identities=16% Similarity=0.158 Sum_probs=110.3
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc-------------------cccce
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM-------------------NSFEI 231 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~ 231 (954)
-.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+.+.-... +.|.-
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d 89 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD 89 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 3578999999999998887432 34567899999999999998886531100 01112
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEE
Q 036345 232 RMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKI 311 (954)
Q Consensus 232 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 311 (954)
.+++..+....++. ++++++.+.. ....+++-++|+|++..........+...+......+.+
T Consensus 90 ~~ei~~~~~~~vd~-ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 90 LIEVDAASNTQVDA-MRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eeEeeccccCCHHH-HHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 22332221111111 1122221110 011356679999999766666677777777665556666
Q ss_pred EEecCc-hhHHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHH
Q 036345 312 LVTTRK-KTVAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPL-AAKTI 381 (954)
Q Consensus 312 iiTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 381 (954)
|++|.+ +.+... ......+++++++.++....+.+.+...+... -.+....|++.++|.+- |+..+
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~----~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF----DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 665544 333222 12246899999999999988877653322111 13455779999999775 44443
No 103
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.19 E-value=1.8e-05 Score=87.57 Aligned_cols=181 Identities=14% Similarity=0.153 Sum_probs=100.8
Q ss_pred ccCCceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC
Q 036345 169 INVSEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF 241 (954)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 241 (954)
....++.|++..+++|.+.+..+-.. .-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~-- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG-- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch--
Confidence 34457999999999998877532110 0123456899999999999999999984 33333 22211
Q ss_pred CHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHh-cCceeEEEecCCCCCC-----------ccChhhHHhhh---cC--
Q 036345 242 DEFRVARAIIEALEGSASNLGELQSLLQRIQTSI-AGKKFLLVLDDMWTDD-----------YSKWEPFNNCL---MN-- 304 (954)
Q Consensus 242 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~-----------~~~~~~l~~~l---~~-- 304 (954)
..+ .....+ ........+.+.. ...+.+|+|||++.-. ......+...+ ..
T Consensus 190 --~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 --SEL----VRKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred --HHH----HHHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 111 111100 0111122222222 3456899999985321 11112232322 21
Q ss_pred CCCCcEEEEecCchhHHh-hh----cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 036345 305 GLRGSKILVTTRKKTVAQ-MM----ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 305 ~~~gs~iiiTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 375 (954)
...+.+||.||....... .+ .-...+++...+.++..++|..++...... ..-++ ..+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCH----HHHHHHcCCCC
Confidence 134677888887543221 11 124578999999999999999877443221 11123 34777777754
No 104
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=4.3e-05 Score=81.62 Aligned_cols=212 Identities=14% Similarity=0.132 Sum_probs=128.1
Q ss_pred cCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARA 249 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 249 (954)
.+..++||+.|++.+.+++...-+ ....+-+.|.|.+|.|||.+...++.+..-...=..++++.+..-.....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 356799999999999999876654 456778999999999999999999886322211124567777665678889999
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHHhcCc--eeEEEecCCCCCCccChhhHHhhhcC-CCCCcEEEEecCchhH--Hhh-
Q 036345 250 IIEALEGSASNLGELQSLLQRIQTSIAGK--KFLLVLDDMWTDDYSKWEPFNNCLMN-GLRGSKILVTTRKKTV--AQM- 323 (954)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iiiTtr~~~v--~~~- 323 (954)
|...+...........+..+.+.+...+. -+|+|+|.+..-....-..+...+.+ .-+++++|+----..+ ...
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 99888322212222244555566655433 58999999843222222334333433 2366777654322211 111
Q ss_pred ---h-----cCcceEeCCCCCHHHHHHHHHHHHcCCCCCC-CchhHHHHHHHHHHhcCCChHHHHHHHh
Q 036345 324 ---M-----ESTDVFSIKELSKQECWSLFKRFAFFGRHPS-ECEQLEEIGRKIVSRCKGLPLAAKTIGS 383 (954)
Q Consensus 324 ---~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~~~~~i~~~c~glPlai~~~~~ 383 (954)
+ -....+..+|.+.++..++|..+.-...... .+..++-.|++++.-.|.+--|+.+.-+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 1 1245788899999999999998874322211 1123333333333333444444444433
No 105
>PRK05642 DNA replication initiation factor; Validated
Probab=98.17 E-value=3.4e-05 Score=79.24 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=92.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCce
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKK 279 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 279 (954)
..+.|+|..|+|||+|++.+++. ....-..++|++..+ +... . ..+.+.+.+-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------G----PELLDNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhCC
Confidence 56899999999999999999873 222223566776432 1111 0 11222222222
Q ss_pred eEEEecCCCCC-CccChhh-HHhhhcC-CCCCcEEEEecCchh---------HHhhhcCcceEeCCCCCHHHHHHHHHHH
Q 036345 280 FLLVLDDMWTD-DYSKWEP-FNNCLMN-GLRGSKILVTTRKKT---------VAQMMESTDVFSIKELSKQECWSLFKRF 347 (954)
Q Consensus 280 ~LlVlDdvw~~-~~~~~~~-l~~~l~~-~~~gs~iiiTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 347 (954)
+||+||+... ....|.. +...+.. ...|..+|+|++... ..+.+.....+++++++.++..+++..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6889999532 1235544 4444432 234678899887532 2222334468999999999999999966
Q ss_pred HcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHh
Q 036345 348 AFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGS 383 (954)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 383 (954)
+.... ..-+ +++..-|++.+.|..-.+..+-.
T Consensus 179 a~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 179 ASRRG-LHLT---DEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHHH
Confidence 64322 1111 56777788888887666554433
No 106
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.17 E-value=2e-06 Score=67.37 Aligned_cols=57 Identities=30% Similarity=0.498 Sum_probs=34.3
Q ss_pred ceeEEEecCCCccccccccccch-hhhccCcCceeeccCcccccccc-cccCCCCccEEeccccC
Q 036345 587 FLRTLKITGESAGVEKSIREIPK-EIEKLKHLRFLKLSQVDLEELPE-TCCELVNLQTLDIEACG 649 (954)
Q Consensus 587 ~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 649 (954)
+|++|++++| .+..+|. .+.++++|++|++++|.++.+|+ .+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n------~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN------KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS------TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC------CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4666666666 5555553 45666666666666666665543 45666666666666654
No 107
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=4.6e-05 Score=88.18 Aligned_cols=198 Identities=13% Similarity=0.147 Sum_probs=113.2
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccc--eEEEEEeCCCCCHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFE--IRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~ 248 (954)
-.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+++.-....... ...+- .+..-.--.
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~ 93 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQ 93 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHH
Confidence 3579999999999999887532 345788999999999999998876311100000 00000 000000001
Q ss_pred HHHHHhhc-----CCCCcccHHH---HHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEec-Cch
Q 036345 249 AIIEALEG-----SASNLGELQS---LLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTT-RKK 318 (954)
Q Consensus 249 ~i~~~l~~-----~~~~~~~~~~---~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~ 318 (954)
.|...... .......+++ +...+.. -..+++-++|+|++..-+....+.|...+......+++|++| ...
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 11110000 0001111222 2222211 123455579999997666566777877776655667776655 434
Q ss_pred hHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 319 TVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 319 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
.+...+ .....++++.++.++....+.+.+-.....-. .+....|++.++|.+.-+...
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 443332 23568999999999999999887643322111 355677999999988765443
No 108
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.14 E-value=1.9e-05 Score=79.74 Aligned_cols=190 Identities=16% Similarity=0.170 Sum_probs=116.2
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEE-EEeCCCCCHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMW-VCVSDPFDEFRVARA 249 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w-v~~s~~~~~~~~~~~ 249 (954)
-.+++|.+..+..+...+.. ....+...+|++|.|||+-|..+++.---.+-|.+++- .++|...... +...
T Consensus 35 ~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~ 107 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE 107 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh
Confidence 45789999999999988874 25678899999999999999887764222345555442 3333322211 0000
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHHh--cCce-eEEEecCCCCCCccChhhHHhhhcCCCCCcEEEE-ecCchhHHhhh-
Q 036345 250 IIEALEGSASNLGELQSLLQRIQTSI--AGKK-FLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILV-TTRKKTVAQMM- 324 (954)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iii-Ttr~~~v~~~~- 324 (954)
...+...+.....+.. .-++ -++|||++.....+.|..++..+......++.|+ |+--..+...+
T Consensus 108 ----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 108 ----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0011111111110000 0123 3889999988888999999998887666666554 44333332222
Q ss_pred cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCC-hHHHHHH
Q 036345 325 ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGL-PLAAKTI 381 (954)
Q Consensus 325 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~ 381 (954)
.....+..++|.+++...-+...+-.++-.-+ .+..+.|++.++|- --|+.++
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcHHHHHHHH
Confidence 22457899999999998888887754443222 45567799999983 3344333
No 109
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.12 E-value=6.9e-05 Score=75.95 Aligned_cols=162 Identities=15% Similarity=0.163 Sum_probs=94.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCccccccc--ceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHh
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSF--EIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSI 275 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 275 (954)
....+.|+|..|+|||+|.+++++. ..... ..+++++ ..++...+...+... .. ..+.+.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~-----~~----~~~~~~~ 95 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFADALRDG-----EI----EEFKDRL 95 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHHHHHTT-----SH----HHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHHHHHcc-----cc----hhhhhhh
Confidence 3445789999999999999999984 33222 2355654 445666666665442 11 2233444
Q ss_pred cCceeEEEecCCCCCCc-cChhh-HHhhhcC-CCCCcEEEEecCch---------hHHhhhcCcceEeCCCCCHHHHHHH
Q 036345 276 AGKKFLLVLDDMWTDDY-SKWEP-FNNCLMN-GLRGSKILVTTRKK---------TVAQMMESTDVFSIKELSKQECWSL 343 (954)
Q Consensus 276 ~~kr~LlVlDdvw~~~~-~~~~~-l~~~l~~-~~~gs~iiiTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 343 (954)
+ .-=+|++||++.-.. ..|.. +...+.. ...|-+||+|++.. ...+.+...-.+++++++.++..++
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 3 334789999954221 22333 3333332 23566899999553 2333345566899999999999999
Q ss_pred HHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 344 FKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 344 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
+.+++....-. --+++..-|++.+.+..-.+..+
T Consensus 175 l~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 175 LQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHH
Confidence 99887543321 22566677888777766555443
No 110
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=8.8e-05 Score=85.39 Aligned_cols=188 Identities=14% Similarity=0.145 Sum_probs=114.8
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccccccc---------------------
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSF--------------------- 229 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--------------------- 229 (954)
-.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+++.-.-....
T Consensus 12 f~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~ 86 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGS 86 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCC
Confidence 367999999999999988742 234567899999999999998887631100000
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHH-hcCceeEEEecCCCCCCccChhhHHhhhcCCCCC
Q 036345 230 EIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTS-IAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRG 308 (954)
Q Consensus 230 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 308 (954)
..++.+..+... +..+..++...+... ..+++-++|+|++..-.....+.|...+......
T Consensus 87 ~dvieidaas~~------------------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~ 148 (584)
T PRK14952 87 IDVVELDAASHG------------------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEH 148 (584)
T ss_pred ceEEEecccccc------------------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCC
Confidence 011122111111 111222222222211 2355668999999877777788888888765556
Q ss_pred cEEEEec-CchhHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHHHhhh
Q 036345 309 SKILVTT-RKKTVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPL-AAKTIGSLL 385 (954)
Q Consensus 309 s~iiiTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~~l 385 (954)
+.+|++| ....+...+ .....+++++++.++..+.+.+.+........ .+....|++.++|.+- |+..+-.++
T Consensus 149 ~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 149 LIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred eEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6666555 444444332 33578999999999998888776543222111 3456778999999774 555554444
No 111
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=6.1e-05 Score=86.28 Aligned_cols=188 Identities=14% Similarity=0.135 Sum_probs=112.9
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccccccc-------------------ce
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSF-------------------EI 231 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-------------------~~ 231 (954)
-.+++|-+..++.|...+.... -...+.++|+.|+||||+|+.+++.---.... ..
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD 89 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD 89 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc
Confidence 3578998888888888886422 24578899999999999998887642110000 00
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcE
Q 036345 232 RMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSK 310 (954)
Q Consensus 232 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 310 (954)
++++.......+ .+...+...+.. ...+++-+||+|++..-....+..|...+........
T Consensus 90 v~eId~a~~~~I------------------d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~i 151 (624)
T PRK14959 90 VVEIDGASNRGI------------------DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVT 151 (624)
T ss_pred eEEEecccccCH------------------HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEE
Confidence 122211111111 111111111111 1245667999999976666667778777765444556
Q ss_pred EEEecCc-hhHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh-HHHHHHHhhh
Q 036345 311 ILVTTRK-KTVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP-LAAKTIGSLL 385 (954)
Q Consensus 311 iiiTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~l 385 (954)
+|++|.. ..+...+ .....+++++++.++....+...+......-. .+....|++.++|.+ .|+..+..++
T Consensus 152 fILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 152 FVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6665544 4443332 23468899999999999988876643322111 456677999999965 6777666554
No 112
>PLN03150 hypothetical protein; Provisional
Probab=98.10 E-value=3.7e-06 Score=99.36 Aligned_cols=108 Identities=25% Similarity=0.429 Sum_probs=89.0
Q ss_pred cceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccc-ccchhhhccCcCceeeccCcccc-cccccccC
Q 036345 559 KLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIR-EIPKEIEKLKHLRFLKLSQVDLE-ELPETCCE 636 (954)
Q Consensus 559 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~ 636 (954)
.++.|+++++. +.+.+|..+..+++|+.|+|++| .+. .+|..++++++|++|+|++|.+. .+|..+++
T Consensus 419 ~v~~L~L~~n~----L~g~ip~~i~~L~~L~~L~Ls~N------~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~ 488 (623)
T PLN03150 419 FIDGLGLDNQG----LRGFIPNDISKLRHLQSINLSGN------SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488 (623)
T ss_pred EEEEEECCCCC----ccccCCHHHhCCCCCCEEECCCC------cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc
Confidence 47888888876 56667878899999999999998 554 68888999999999999999987 78999999
Q ss_pred CCCccEEeccccCCCccccccccCC-CCCCEEeccCccccc
Q 036345 637 LVNLQTLDIEACGSLKRLPQGIGKL-VNLRHLMISHNVYLD 676 (954)
Q Consensus 637 L~~L~~L~L~~~~~l~~lp~~i~~l-~~L~~L~l~~~~~~~ 676 (954)
|++|++|+|++|.....+|..+..+ .++..+++.+|..+.
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 9999999999998667889887753 467788888775443
No 113
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=8.5e-05 Score=86.15 Aligned_cols=203 Identities=13% Similarity=0.177 Sum_probs=110.9
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEE-eCCCCCHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVC-VSDPFDEFRVARA 249 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~ 249 (954)
-.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+.+.-.-...++...|-. +...+..-..-+.
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHH
Confidence 3578999998998888886422 345688999999999999987765311111010000110 0000000000111
Q ss_pred HHHHhhc-----CCCCcccHHHHHHHHHHH----hcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEec-Cchh
Q 036345 250 IIEALEG-----SASNLGELQSLLQRIQTS----IAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTT-RKKT 319 (954)
Q Consensus 250 i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~~ 319 (954)
+...-.. .......++++...+... ..+++-++|+|+++.......+.|...+......+.+|++| +...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 1000000 000111123332222111 23555688999997665566777887776655556655544 4444
Q ss_pred HHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHHH
Q 036345 320 VAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPL-AAKTIG 382 (954)
Q Consensus 320 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 382 (954)
+... ......+++.+++.++....+.+.+......- -.+.+..|++.++|..- |+..+-
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I----~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI----DADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4433 23367899999999998888877553222111 14566779999999554 444443
No 114
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=4.4e-05 Score=89.37 Aligned_cols=196 Identities=15% Similarity=0.185 Sum_probs=111.7
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
-.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++.-....... ....++.-...+.|
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i 83 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAI 83 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHH
Confidence 3579999999999988886432 345678999999999999998876311000000 00011111122222
Q ss_pred HHHhhcC-----CCCcccHHHHH---HHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCc-hhH
Q 036345 251 IEALEGS-----ASNLGELQSLL---QRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRK-KTV 320 (954)
Q Consensus 251 ~~~l~~~-----~~~~~~~~~~~---~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v 320 (954)
......+ .......+.+. ..+.. ...+++-++|+|++..-.....+.|...+......+.+|++|.+ ..+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 2111100 00111122222 11111 11245668999999655555667777776665556666666543 333
Q ss_pred Hhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 321 AQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 321 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
...+ .....++++.++.++....+...+...+..-. .+....|++.++|.+..+...
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 3322 23467899999999999888876643222111 456778999999988655443
No 115
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=0.00012 Score=85.12 Aligned_cols=185 Identities=15% Similarity=0.181 Sum_probs=110.3
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccc-c---c------------eEEE
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNS-F---E------------IRMW 234 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f---~------------~~~w 234 (954)
-.+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+++.---... . . .+++
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie 91 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE 91 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE
Confidence 357899999999999988743 24566789999999999999888653100000 0 0 0011
Q ss_pred EEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEE
Q 036345 235 VCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILV 313 (954)
Q Consensus 235 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iii 313 (954)
+..... ....++..+.+.+.. ...+++-++|+|++..-....+..|...+......+.+|+
T Consensus 92 idaasn------------------~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 92 MDAASN------------------NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred Eecccc------------------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEE
Confidence 111000 011112222222221 1235666899999976666677778777765544555554
Q ss_pred -ecCchhHHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHHH
Q 036345 314 -TTRKKTVAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPL-AAKTIG 382 (954)
Q Consensus 314 -Ttr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 382 (954)
|+....+... ......+++.+++.++....+...+...+.... .+.+..|++.++|.+. |+..+-
T Consensus 154 aTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 154 ATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred EcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 4444444433 233568999999999999888875533221111 3456779999999765 444433
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00013 Score=81.14 Aligned_cols=182 Identities=15% Similarity=0.212 Sum_probs=104.9
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccc------ccccceE-EEEEeCCCCCH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDV------MNSFEIR-MWVCVSDPFDE 243 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~------~~~f~~~-~wv~~s~~~~~ 243 (954)
-.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+.+.-.. ...|... +-+........
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV 90 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH
Confidence 357899999999999988642 23468889999999999999988663111 0112111 11111111111
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEec-CchhHHh
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTT-RKKTVAQ 322 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~~v~~ 322 (954)
+....+++.+.. ....+++-+||+|++.......+..+...+......+.+|++| ....+..
T Consensus 91 -~~i~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 91 -DDIRNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred -HHHHHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 111111111110 0112455589999995444445666666565444455666555 3333322
Q ss_pred h-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 036345 323 M-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAA 378 (954)
Q Consensus 323 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 378 (954)
. ......++++++++++....+...+...+-.-. .+..+.+++.++|.+-.+
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 2 223457999999999999888876643322111 456777889999866543
No 117
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.0001 Score=88.32 Aligned_cols=180 Identities=12% Similarity=0.132 Sum_probs=111.1
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccccc----------------------c
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMN----------------------S 228 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----------------------~ 228 (954)
-.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+.-.-.. +
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~ 88 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGS 88 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCC
Confidence 3578999999999999887432 345688999999999999988866311000 1
Q ss_pred cceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHH-HHhcCceeEEEecCCCCCCccChhhHHhhhcCCCC
Q 036345 229 FEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQ-TSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLR 307 (954)
Q Consensus 229 f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 307 (954)
++ ++++....... ..++.++.+.+. .-..+++-++|||++.......++.|...+..-..
T Consensus 89 ~d-v~eidaas~~~------------------Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~ 149 (824)
T PRK07764 89 LD-VTEIDAASHGG------------------VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPE 149 (824)
T ss_pred Cc-EEEecccccCC------------------HHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCC
Confidence 11 11221111111 111112211111 11235556889999987777788888888877656
Q ss_pred CcEEEEecC-chhHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 036345 308 GSKILVTTR-KKTVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAA 378 (954)
Q Consensus 308 gs~iiiTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 378 (954)
.+.+|++|. ...+...+ .....|+++.++.++..+++.+.+-.... .. -.+....|++.++|.+..+
T Consensus 150 ~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-~i---d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 150 HLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-PV---EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHH
Confidence 666665554 34444333 33568999999999998888775532221 11 1345567999999988443
No 118
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00022 Score=81.02 Aligned_cols=183 Identities=16% Similarity=0.187 Sum_probs=108.4
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccc---c----------------cccceE
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDV---M----------------NSFEIR 232 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~----------------~~f~~~ 232 (954)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.++..-.- . +.|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 568999999999999886432 3456778999999999999887663100 0 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEE
Q 036345 233 MWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKI 311 (954)
Q Consensus 233 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 311 (954)
+++..+.... ..+...+...+.. ...+++-++|+|+++.-.....+.+...+....+...+
T Consensus 91 ~eidaas~~g------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRG------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCC------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 2222111111 1111222222211 12356679999999665555666777766655445556
Q ss_pred EEec-CchhHHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 312 LVTT-RKKTVAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 312 iiTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
|++| +...+... ......+.+.+++.++....+.+.+-..+-..+ .+....|++.++|.+..+...
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 5555 43333322 223458999999999998888876543222111 345667889999977655444
No 119
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.02 E-value=9.7e-05 Score=83.27 Aligned_cols=167 Identities=18% Similarity=0.133 Sum_probs=100.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCce
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKK 279 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 279 (954)
.-+.|+|..|+|||+|++.+++.-.....-..+++++ ..++...+...+.... .....+.+.++ ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-cC
Confidence 4588999999999999999988311111112344444 3456666666664311 11223333333 34
Q ss_pred eEEEecCCCCCCc-cCh-hhHHhhhcC-CCCCcEEEEecCch---------hHHhhhcCcceEeCCCCCHHHHHHHHHHH
Q 036345 280 FLLVLDDMWTDDY-SKW-EPFNNCLMN-GLRGSKILVTTRKK---------TVAQMMESTDVFSIKELSKQECWSLFKRF 347 (954)
Q Consensus 280 ~LlVlDdvw~~~~-~~~-~~l~~~l~~-~~~gs~iiiTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 347 (954)
-+||+||+..... ..+ +.+...+.. ...|..||+|+... .+...+...-++.+++++.++..+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 4889999954321 122 334443332 23455788887543 22233444568889999999999999988
Q ss_pred HcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 036345 348 AFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIG 382 (954)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 382 (954)
+-.... . ..--+++..-|++.++|.|-.+..+.
T Consensus 288 ~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 288 IKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 743221 0 01225677889999999998776554
No 120
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.02 E-value=0.00024 Score=74.08 Aligned_cols=167 Identities=16% Similarity=0.202 Sum_probs=107.9
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
++.+.+|+.++..+..++...+. .-+..|.|+|..|.|||.+.+++++... ...+|+++-+.++.+-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 57789999999999998875442 2456679999999999999999998541 236899999999999999999
Q ss_pred HHHhhcCCCCcc-------cHHHHHHHHHH--Hh--cCceeEEEecCCCCCCccChhh-HHhhh---cC-CCCCcEEEEe
Q 036345 251 IEALEGSASNLG-------ELQSLLQRIQT--SI--AGKKFLLVLDDMWTDDYSKWEP-FNNCL---MN-GLRGSKILVT 314 (954)
Q Consensus 251 ~~~l~~~~~~~~-------~~~~~~~~l~~--~l--~~kr~LlVlDdvw~~~~~~~~~-l~~~l---~~-~~~gs~iiiT 314 (954)
+.++.....+.. ........+.+ .. +++.++||||++. ...+.+. +...+ .. .....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad--~lrD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNAD--ALRDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHH--hhhccchHHHHHHHHHHHHhCCCceEEEE
Confidence 999962221111 11222333333 12 2468999999993 3333333 11111 11 1222334444
Q ss_pred cCc--hhH-HhhhcCc--ceEeCCCCCHHHHHHHHHHH
Q 036345 315 TRK--KTV-AQMMEST--DVFSIKELSKQECWSLFKRF 347 (954)
Q Consensus 315 tr~--~~v-~~~~~~~--~~~~l~~L~~~~~~~lf~~~ 347 (954)
+-- +.. ...++.. .++....-+.+|..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 432 222 2224443 46778999999999998764
No 121
>CHL00181 cbbX CbbX; Provisional
Probab=98.02 E-value=0.00018 Score=76.06 Aligned_cols=136 Identities=13% Similarity=0.081 Sum_probs=74.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGK 278 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 278 (954)
...+.++|++|+||||+|+.+++.....+.-...-|+.++. .+ +.....+.. .......+.+. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~-----~~~~~~~l~~a---~ 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT-----APKTKEVLKKA---M 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc-----hHHHHHHHHHc---c
Confidence 34588999999999999999976311111111122455442 12 222222211 01112222222 2
Q ss_pred eeEEEecCCCCC---------CccChhhHHhhhcCCCCCcEEEEecCchhHHhhh--------cCcceEeCCCCCHHHHH
Q 036345 279 KFLLVLDDMWTD---------DYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQMM--------ESTDVFSIKELSKQECW 341 (954)
Q Consensus 279 r~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~~--------~~~~~~~l~~L~~~~~~ 341 (954)
.-+|+||++..- ..+..+.+...+.....+.+||+++........+ .-...+++++++.++..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 248999999531 1122233444454444566777887654432211 11347999999999999
Q ss_pred HHHHHHHcC
Q 036345 342 SLFKRFAFF 350 (954)
Q Consensus 342 ~lf~~~~~~ 350 (954)
+++...+-.
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 999887643
No 122
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.01 E-value=5.7e-06 Score=64.81 Aligned_cols=60 Identities=35% Similarity=0.561 Sum_probs=50.4
Q ss_pred CcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccc-hhhhccCcCceeeccCccc
Q 036345 558 KKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIP-KEIEKLKHLRFLKLSQVDL 627 (954)
Q Consensus 558 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~i 627 (954)
++|++|++++|. +....+..|.++++|++|++++| .+..+| ..+.++++|++|++++|.|
T Consensus 1 p~L~~L~l~~n~----l~~i~~~~f~~l~~L~~L~l~~N------~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK----LTEIPPDSFSNLPNLETLDLSNN------NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST----ESEECTTTTTTGTTESEEEETSS------SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC----CCccCHHHHcCCCCCCEeEccCC------ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578899999886 55555677899999999999999 788885 4689999999999999875
No 123
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00022 Score=80.91 Aligned_cols=181 Identities=14% Similarity=0.117 Sum_probs=112.2
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcc---ccc---------------ccc-e
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDND---VMN---------------SFE-I 231 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~---------------~f~-~ 231 (954)
-.+++|-+..++.+...+... .-..++.++|+.|+||||+|+.+.+.-- ... .+. .
T Consensus 13 fdeiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 357999998889998888642 2455778999999999999987755210 000 010 1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH----HhcCceeEEEecCCCCCCccChhhHHhhhcCCCC
Q 036345 232 RMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQT----SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLR 307 (954)
Q Consensus 232 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 307 (954)
++.+..+... ..+.+.+.+.. ...+++-++|+|++..-..+....|...+.....
T Consensus 88 v~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 88 IIEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 1222211111 12222222211 1124566899999977776777778777766556
Q ss_pred CcEEEEecCch-hHHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 308 GSKILVTTRKK-TVAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 308 gs~iiiTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
.+++|++|.+. .+... ......+++.+++.++....+.+.+...+..-. .+.+..|++.++|.+.-+..+
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHH
Confidence 67777766553 22221 122568999999999999988876543322111 456677999999988655444
No 124
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.01 E-value=2.1e-05 Score=85.87 Aligned_cols=121 Identities=13% Similarity=0.104 Sum_probs=77.7
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
..++++.+...+.+...|... +.+.++|++|+|||++|+.+++.......|..+.||++++.++..+++..+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc
Confidence 346888899999999998743 357889999999999999998854444567788999999988877665432
Q ss_pred HHHhhcCCCCcccH-HHHHHHHHHHh--cCceeEEEecCCCCCCccC-hhhHHhhhc
Q 036345 251 IEALEGSASNLGEL-QSLLQRIQTSI--AGKKFLLVLDDMWTDDYSK-WEPFNNCLM 303 (954)
Q Consensus 251 ~~~l~~~~~~~~~~-~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~-~~~l~~~l~ 303 (954)
. ....+-.-. ....+.+.+.. .+++++||+|++-..+.+. +..+...+.
T Consensus 246 r----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 246 R----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred C----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1 111111100 11122222222 2468999999996544333 444444343
No 125
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.00 E-value=1.1e-05 Score=86.55 Aligned_cols=90 Identities=17% Similarity=0.109 Sum_probs=62.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCC--CCHHHHHHHHHHHhhcCCCCcccHH------HHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDP--FDEFRVARAIIEALEGSASNLGELQ------SLLQ 269 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 269 (954)
....++|+|++|+|||||++.+++.... .+|+..+||.+.++ .++.++++.+...+-....+..... ...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3457899999999999999999996433 37999999999866 7899999988654433222221111 1112
Q ss_pred HHHHH-hcCceeEEEecCCC
Q 036345 270 RIQTS-IAGKKFLLVLDDMW 288 (954)
Q Consensus 270 ~l~~~-l~~kr~LlVlDdvw 288 (954)
..... -++++++|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 22222 25899999999994
No 126
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.00 E-value=5.8e-05 Score=91.69 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=85.6
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccc------cceEEE-EEeCCCCCHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNS------FEIRMW-VCVSDPFDEF 244 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~w-v~~s~~~~~~ 244 (954)
.+++||+.++++++..|.... ..-+.++|++|+||||+|+.+++. +... ....+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~----- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL----- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh-----
Confidence 578999999999999887533 234569999999999999988873 2111 122333 22221
Q ss_pred HHHHHHHHHhhcCCCCcccHHH-HHHHHHHHh-cCceeEEEecCCCCCCc-----cChh--h-HHhhhcCCCCCcEEEEe
Q 036345 245 RVARAIIEALEGSASNLGELQS-LLQRIQTSI-AGKKFLLVLDDMWTDDY-----SKWE--P-FNNCLMNGLRGSKILVT 314 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l-~~kr~LlVlDdvw~~~~-----~~~~--~-l~~~l~~~~~gs~iiiT 314 (954)
+........+.+. +...+.+.- .+++.+|++|+++.-.. ..-+ . +...+.. ..-++|-|
T Consensus 254 ---------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~Iga 322 (852)
T TIGR03345 254 ---------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAA 322 (852)
T ss_pred ---------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEe
Confidence 1000001111222 222222221 25689999999964211 1112 1 3333322 23456666
Q ss_pred cCchhHHhh-------hcCcceEeCCCCCHHHHHHHHHHH
Q 036345 315 TRKKTVAQM-------MESTDVFSIKELSKQECWSLFKRF 347 (954)
Q Consensus 315 tr~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 347 (954)
|...+.... ......+.+++++.++..+++...
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 665433221 122458999999999999997543
No 127
>PF14516 AAA_35: AAA-like domain
Probab=97.97 E-value=0.00095 Score=72.48 Aligned_cols=203 Identities=12% Similarity=0.106 Sum_probs=119.5
Q ss_pred ccCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCC-----CCH
Q 036345 169 INVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDP-----FDE 243 (954)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~ 243 (954)
.+.+..|+|...-+++.+.+..+ ...+.|.|+-.+|||+|...+.+..+- ..+ .++++++..- .+.
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~ 78 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDL 78 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCH
Confidence 34456788986667777777542 348999999999999999888774222 233 4557776541 346
Q ss_pred HHHHHHHHHHhhcCCCC-----------cccHHHHHHHHHHHh---cCceeEEEecCCCCCC--ccChhhHHhhhcC---
Q 036345 244 FRVARAIIEALEGSASN-----------LGELQSLLQRIQTSI---AGKKFLLVLDDMWTDD--YSKWEPFNNCLMN--- 304 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~-----------~~~~~~~~~~l~~~l---~~kr~LlVlDdvw~~~--~~~~~~l~~~l~~--- 304 (954)
...++.++..+...-.- ..........+.+.+ .+++.+|+||++..-- ....+.+...++.
T Consensus 79 ~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 79 EQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYE 158 (331)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHH
Confidence 66666666655432111 112223333444432 2689999999994321 1111233333321
Q ss_pred -CC----CCcEEEEecCchh---HHhh----hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcC
Q 036345 305 -GL----RGSKILVTTRKKT---VAQM----MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCK 372 (954)
Q Consensus 305 -~~----~gs~iiiTtr~~~---v~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~ 372 (954)
.. ..+-.++...+.. ..+. +.....++|++++.+|...|...+-.. .. ....++|...+|
T Consensus 159 ~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~----~~~~~~l~~~tg 230 (331)
T PF14516_consen 159 QRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS----QEQLEQLMDWTG 230 (331)
T ss_pred hcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC----HHHHHHHHHHHC
Confidence 11 1112222222211 1111 122357899999999999999876421 11 122778999999
Q ss_pred CChHHHHHHHhhhcCC
Q 036345 373 GLPLAAKTIGSLLRFK 388 (954)
Q Consensus 373 glPlai~~~~~~l~~~ 388 (954)
|+|.-+..++..+..+
T Consensus 231 GhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 231 GHPYLVQKACYLLVEE 246 (331)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999653
No 128
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=2.9e-05 Score=83.86 Aligned_cols=66 Identities=29% Similarity=0.445 Sum_probs=37.7
Q ss_pred hhccCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCC
Q 036345 611 IEKLKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKG 681 (954)
Q Consensus 611 i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~ 681 (954)
+..+.+|++|++++|.++.+|. -..+|+.|.+++|..+..+|..+ ..+|++|.+++|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 3345566666666666666651 12346666666666666666544 246666666666545555543
No 129
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.95 E-value=0.00011 Score=73.29 Aligned_cols=126 Identities=21% Similarity=0.327 Sum_probs=73.3
Q ss_pred cccCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHH
Q 036345 168 LINVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVA 247 (954)
Q Consensus 168 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 247 (954)
.+..++++|.|.+++.|++-...--. +....-+.+||..|.|||++++.+.+...-++ . --|.|.+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G---L-RlIev~k-------- 88 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG---L-RLIEVSK-------- 88 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---c-eEEEECH--------
Confidence 34556899999999988763322111 22345678899999999999999987321111 1 1222322
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCC-CCCccChhhHHhhhcCC----CCCcEEEEecCchhH
Q 036345 248 RAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMW-TDDYSKWEPFNNCLMNG----LRGSKILVTTRKKTV 320 (954)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw-~~~~~~~~~l~~~l~~~----~~gs~iiiTtr~~~v 320 (954)
.+..++..+.+.++. +..||+|++||+. +.+...+..+++.+..+ ..+..|..||..++.
T Consensus 89 -----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 89 -----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred -----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 122333444444442 3579999999984 23334566777776543 233344455544443
No 130
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00023 Score=83.19 Aligned_cols=181 Identities=17% Similarity=0.200 Sum_probs=111.1
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcc---------------------ccccc
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDND---------------------VMNSF 229 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---------------------~~~~f 229 (954)
-.+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+.+... ...+|
T Consensus 16 f~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 357899999999999988643 2456688999999999999987755210 01123
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCc
Q 036345 230 EIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGS 309 (954)
Q Consensus 230 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 309 (954)
+. ..+..+....+.. +++++.++... -..+++=++|+|++..-+...++.|...+......+
T Consensus 91 n~-~~ld~~~~~~vd~-Ir~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 91 NI-HELDAASNNSVDD-IRNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred ce-EEecccccCCHHH-HHHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 21 1222221111111 11111111110 012455588999997766667888888877655666
Q ss_pred EEEEec-CchhHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 036345 310 KILVTT-RKKTVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAA 378 (954)
Q Consensus 310 ~iiiTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 378 (954)
.+|++| ....+...+ .....+++++++.++....+...+...+-... .+.+..|++.++|..--+
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 766555 444444332 33568999999999999888876543322111 345677999999976544
No 131
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.93 E-value=1.7e-05 Score=84.00 Aligned_cols=236 Identities=23% Similarity=0.223 Sum_probs=150.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccce-EEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEI-RMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIA 276 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 276 (954)
..+-+.++|.|||||||++-.+.. +...|.. +.+|....-.+...+.-.....++..... -+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 467899999999999999988877 4556754 55666666666666666666666654322 1233445666677
Q ss_pred CceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHHhhhcCcceEeCCCCCHH-HHHHHHHHHHcCCCCC-
Q 036345 277 GKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQMMESTDVFSIKELSKQ-ECWSLFKRFAFFGRHP- 354 (954)
Q Consensus 277 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~~- 354 (954)
++|.++|+||-.+- ...-..+...+-.+...-.|+.|+|..... .......+.+|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998321 111222333344455556788888876543 34556777778765 6888887665322211
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhhhhhccccc-------ccchhhHHHhhhcCCChhh
Q 036345 355 SECEQLEEIGRKIVSRCKGLPLAAKTIGSLLRFKKTREEWQRILDSEMWKLKEF-------EKGLLAPLLLSYNDLPTMV 427 (954)
Q Consensus 355 ~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~-------~~~i~~~l~~sy~~L~~~~ 427 (954)
.-...-......|.++..|.|++|..+++..+.- ...+-..-++.....+.+. .......+.+||.-|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 1111224566779999999999999998887643 2333333332222222221 1335677899999999888
Q ss_pred hhHHhHhcCCCCCcccc
Q 036345 428 KRCFSYCAVFPKDYNIE 444 (954)
Q Consensus 428 k~cf~~~~~fp~~~~i~ 444 (954)
+--|.-++.|.-.+.-.
T Consensus 242 ~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 242 RALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHHhcchhhhhhhhccc
Confidence 88888888887665433
No 132
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00026 Score=79.86 Aligned_cols=184 Identities=15% Similarity=0.169 Sum_probs=108.0
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc---------------------ccc
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM---------------------NSF 229 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---------------------~~f 229 (954)
-.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+.+.-.-. .++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 357999999999999888642 234678899999999999998876521000 011
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCC
Q 036345 230 EIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRG 308 (954)
Q Consensus 230 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 308 (954)
+ .+++........ .+...+.+.+.. ...+++-++|+|++........+.|...+......
T Consensus 91 d-~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 91 D-VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred c-eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 1 111111111111 111111111111 12356678999999654445566677776665556
Q ss_pred cEEEEecCc-hhHHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHHH
Q 036345 309 SKILVTTRK-KTVAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPL-AAKTIG 382 (954)
Q Consensus 309 s~iiiTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 382 (954)
+.+|++|.. ..+... ......++++++++++....+.+.+-..+..- -.+.+..|++.++|.+. |+..+-
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i----~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET----SREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 667666633 333222 22356899999999999888887653322111 14566779999999764 444443
No 133
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00037 Score=81.42 Aligned_cols=196 Identities=15% Similarity=0.189 Sum_probs=110.2
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAII 251 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 251 (954)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++.---. ..... ....+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKP----TPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCC----CCCCCcccHHHHHHh
Confidence 578999999999988887532 23567899999999999999887641110 00000 000111111111111
Q ss_pred HHhhc-----CCCCcccHHHHHHHHHHH----hcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCc-hhHH
Q 036345 252 EALEG-----SASNLGELQSLLQRIQTS----IAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRK-KTVA 321 (954)
Q Consensus 252 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v~ 321 (954)
..... .......++.+.+.+... ..+++-++|+|++.......+..|...+......+.+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 11100 000111222222222111 1245568999999766666777787777665455555555543 3333
Q ss_pred hhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 322 QMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 322 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
..+ .....+++..++.++....+...+......-. .+....|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 322 23567889999999988888776533221111 345678999999988655443
No 134
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.88 E-value=0.0001 Score=81.88 Aligned_cols=180 Identities=12% Similarity=0.156 Sum_probs=98.5
Q ss_pred cCCceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD 242 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 242 (954)
...++.|+++.++++.+.+..+-.. .-..++-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh---
Confidence 3457899999999998876432110 0124566899999999999999999984 2222 233221
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHh-cCceeEEEecCCCCC-----------CccChhhHHhhhcC-----C
Q 036345 243 EFRVARAIIEALEGSASNLGELQSLLQRIQTSI-AGKKFLLVLDDMWTD-----------DYSKWEPFNNCLMN-----G 305 (954)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~-----------~~~~~~~l~~~l~~-----~ 305 (954)
.. +.....+. .......+.+.. ...+.+|+|||+..- +......+...+.. .
T Consensus 199 -~~----l~~~~~g~------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 -SE----LVQKFIGE------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -HH----HhHhhccc------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 11 11111110 111222222222 345689999999431 01111223333321 1
Q ss_pred CCCcEEEEecCchhHHh-hh-c---CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 036345 306 LRGSKILVTTRKKTVAQ-MM-E---STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 306 ~~gs~iiiTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 375 (954)
..+..||.||....... .+ . -...+++++.+.++..++|..+.....- ...-++ ..+++.+.|.-
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVDL----EELAELTEGAS 337 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCCH----HHHHHHcCCCC
Confidence 23567777776543222 11 1 1457999999999999999987643221 111233 33666666643
No 135
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.87 E-value=0.00031 Score=74.31 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=72.4
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCcee
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKF 280 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 280 (954)
-+.++|++|+||||+|+.++..-...+.....-|+.++. .+ ++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 588999999999999977765211111111123444442 12 222222211 11122222222 235
Q ss_pred EEEecCCCCC---------CccChhhHHhhhcCCCCCcEEEEecCchhHHhhhc--------CcceEeCCCCCHHHHHHH
Q 036345 281 LLVLDDMWTD---------DYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQMME--------STDVFSIKELSKQECWSL 343 (954)
Q Consensus 281 LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~~~--------~~~~~~l~~L~~~~~~~l 343 (954)
+|+||++..- ..+.++.+...+.....+.+||+++........+. -...+++++++.+|..++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999521 11223445555555555667777776443222111 135789999999999999
Q ss_pred HHHHHc
Q 036345 344 FKRFAF 349 (954)
Q Consensus 344 f~~~~~ 349 (954)
+.+.+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988763
No 136
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.87 E-value=0.00024 Score=74.67 Aligned_cols=161 Identities=14% Similarity=0.120 Sum_probs=81.2
Q ss_pred ceeechhhhhHHHHHhhcc--------C-CCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 173 EVRGRDEEKNSLKSKLLCE--------S-SQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~--------~-~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
.++|.+..+++|.+..... . -...+....+.++|++|+||||+|+.+++.-.-........++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 4788887776665432211 0 01123456788999999999999999976310001111112333322
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCC--------ccChhhHHhhhcCCCCCcEEEEec
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDD--------YSKWEPFNNCLMNGLRGSKILVTT 315 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iiiTt 315 (954)
.++. ....+. ........+.+. ..-+|++|++..-. .+..+.+...+........+|+++
T Consensus 83 ~~l~----~~~~g~-----~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLV----GEYIGH-----TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhh----hhhccc-----hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 1111 111110 011112222221 23489999995411 112233444443433344556665
Q ss_pred CchhHHh------hh-cC-cceEeCCCCCHHHHHHHHHHHHc
Q 036345 316 RKKTVAQ------MM-ES-TDVFSIKELSKQECWSLFKRFAF 349 (954)
Q Consensus 316 r~~~v~~------~~-~~-~~~~~l~~L~~~~~~~lf~~~~~ 349 (954)
....... .+ .. ...+++++++.++..+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4433211 11 11 24688999999999999987764
No 137
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00046 Score=79.66 Aligned_cols=194 Identities=13% Similarity=0.125 Sum_probs=111.7
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
-.+++|-+..++.+...+... .-...+.++|+.|+||||+|+.+++.---...... ..+..-.+- +.|
T Consensus 15 f~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i 82 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSI 82 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHH
Confidence 357999999999999988743 24567889999999999999988773111000000 000000000 000
Q ss_pred HHHhh-----cCCCCcccHHHHHHHH---HH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCc-hhH
Q 036345 251 IEALE-----GSASNLGELQSLLQRI---QT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRK-KTV 320 (954)
Q Consensus 251 ~~~l~-----~~~~~~~~~~~~~~~l---~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v 320 (954)
...-. .........+.+.+.. .. ...+++-++|+|++..-....++.+...+......+.+|++|.. ..+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 00000 0000011222222211 11 12356668999999766666677777777665556666666543 333
Q ss_pred Hhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 036345 321 AQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKT 380 (954)
Q Consensus 321 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 380 (954)
...+ .....+++++++.++....+.+.+......- -.+.+..|++.++|.+..+..
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i----d~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY----EDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 3322 2345799999999999888887664332211 145667799999998865433
No 138
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.86 E-value=0.00015 Score=78.84 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=87.3
Q ss_pred cCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARA 249 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 249 (954)
.-.+++|.+...+.+..++... ....++.++|++|+||||+|+.+++. ... ....++.+. ... ...++
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~-~~i~~ 86 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRI-DFVRN 86 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccH-HHHHH
Confidence 3467899999999999988642 24568888999999999999999884 211 123344433 111 11111
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCC-CccChhhHHhhhcCCCCCcEEEEecCchh-HHhhh-cC
Q 036345 250 IIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTD-DYSKWEPFNNCLMNGLRGSKILVTTRKKT-VAQMM-ES 326 (954)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~~~-~~ 326 (954)
.+..+... ..+.+.+-+||+||+... ..+....+...+.....++++|+||.... +...+ ..
T Consensus 87 ~l~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 87 RLTRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 11111000 001234557899999644 22223345554555556778888886543 11111 22
Q ss_pred cceEeCCCCCHHHHHHHHHH
Q 036345 327 TDVFSIKELSKQECWSLFKR 346 (954)
Q Consensus 327 ~~~~~l~~L~~~~~~~lf~~ 346 (954)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 34677777888877766553
No 139
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.84 E-value=0.00045 Score=77.75 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=92.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCccccccc--ceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSF--EIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIA 276 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 276 (954)
...+.|+|+.|+|||+|++.+++. ..... ..++++++ .++...+...+... ..+. +.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 346889999999999999999984 33222 23556643 34444555554322 1222 223332
Q ss_pred CceeEEEecCCCCCCcc-Ch-hhHHhhhcC-CCCCcEEEEecCc-hhH--------HhhhcCcceEeCCCCCHHHHHHHH
Q 036345 277 GKKFLLVLDDMWTDDYS-KW-EPFNNCLMN-GLRGSKILVTTRK-KTV--------AQMMESTDVFSIKELSKQECWSLF 344 (954)
Q Consensus 277 ~kr~LlVlDdvw~~~~~-~~-~~l~~~l~~-~~~gs~iiiTtr~-~~v--------~~~~~~~~~~~l~~L~~~~~~~lf 344 (954)
+ .-+|||||+...... .+ +.+...+.. ...|..+|+|+.. ... ...+.....+.+++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 338899999542211 11 223333322 1234567787754 221 112233357899999999999999
Q ss_pred HHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHH
Q 036345 345 KRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAK 379 (954)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 379 (954)
.+.+..... .. -+++...|++.+.|..-.+.
T Consensus 278 ~~~~~~~~~-~l---~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGL-EL---PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCC-CC---CHHHHHHHHHhcCCCHHHHH
Confidence 988754322 11 15667778888888766443
No 140
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=6.4e-07 Score=89.15 Aligned_cols=161 Identities=18% Similarity=0.169 Sum_probs=103.0
Q ss_pred CccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCC--cchhcccCccEEEEeCcCCC
Q 036345 735 LDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFP--SWIMSLCKLKVLLLSFCIKC 812 (954)
Q Consensus 735 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~L~~c~~~ 812 (954)
++.|++|+.|.|.++.. ++.+...+....+|+.|+|+++.|..... -.+.+|+.|..|+|++|...
T Consensus 206 Ls~C~kLk~lSlEg~~L------------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRL------------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHHHhhhhcccccccc------------CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 45677777777776644 33455566777888888888887755221 12337888888999988754
Q ss_pred CcCC-C-C-CCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccccccccccccccccccc
Q 036345 813 EIMP-P-L-GKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVM 889 (954)
Q Consensus 813 ~~l~-~-l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 889 (954)
...- . + .--++|+.|+|+|+...-... ..-.. ...+|+|..|+++++..++.-.+ ..+..|
T Consensus 274 ~~~Vtv~V~hise~l~~LNlsG~rrnl~~s-h~~tL------------~~rcp~l~~LDLSD~v~l~~~~~---~~~~kf 337 (419)
T KOG2120|consen 274 TEKVTVAVAHISETLTQLNLSGYRRNLQKS-HLSTL------------VRRCPNLVHLDLSDSVMLKNDCF---QEFFKF 337 (419)
T ss_pred chhhhHHHhhhchhhhhhhhhhhHhhhhhh-HHHHH------------HHhCCceeeeccccccccCchHH---HHHHhc
Confidence 4321 1 1 123788888888876211111 00000 12688899999988887766332 235578
Q ss_pred cccceecccccccCcCCCC---CCCCCCCcceEEEecCc
Q 036345 890 PQLNSLKIENCSKLKSLPD---QLLRSTTLENLEIKKCP 925 (954)
Q Consensus 890 p~L~~L~l~~c~~l~~lp~---~~~~l~~L~~L~l~~c~ 925 (954)
+.|++|.++.|..+- |. .+...|+|.+|++.||-
T Consensus 338 ~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred chheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 899999999987542 32 24567889999988874
No 141
>PRK06620 hypothetical protein; Validated
Probab=97.83 E-value=0.00025 Score=71.50 Aligned_cols=135 Identities=12% Similarity=0.057 Sum_probs=79.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCce
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKK 279 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 279 (954)
..+.|+|++|+|||+|++.+++... . .++. ..+. . + +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~--------------~-------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF--------------N-------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh--------------c-------h-------hHH-hcC
Confidence 5689999999999999999887421 1 1111 1000 0 0 011 123
Q ss_pred eEEEecCCCCCCccChhhHHhhhcC-CCCCcEEEEecCchh-------HHhhhcCcceEeCCCCCHHHHHHHHHHHHcCC
Q 036345 280 FLLVLDDMWTDDYSKWEPFNNCLMN-GLRGSKILVTTRKKT-------VAQMMESTDVFSIKELSKQECWSLFKRFAFFG 351 (954)
Q Consensus 280 ~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iiiTtr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 351 (954)
-++++||+... ++ ..+...+.. ...|..||+|++... ..+.+....++++++++.++...++.+.+...
T Consensus 87 d~lliDdi~~~--~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENW--QE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccc--hH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 57889999421 11 123332221 135668999987532 22334445689999999999888888766422
Q ss_pred CCCCCchhHHHHHHHHHHhcCCChHHHH
Q 036345 352 RHPSECEQLEEIGRKIVSRCKGLPLAAK 379 (954)
Q Consensus 352 ~~~~~~~~~~~~~~~i~~~c~glPlai~ 379 (954)
. ... -+++..-|++.+.|.--.+.
T Consensus 164 ~-l~l---~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 S-VTI---SRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred C-CCC---CHHHHHHHHHHccCCHHHHH
Confidence 1 111 15666778888877655443
No 142
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00037 Score=81.28 Aligned_cols=198 Identities=13% Similarity=0.222 Sum_probs=110.3
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
-.+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+++.---..... ...+..-..-..|
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i 82 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEI 82 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHH
Confidence 367999998889998888642 2345678999999999999988866311000000 0000000000000
Q ss_pred HHH-------hhc-CCCCcccHHHHHHHHHHH-hcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEec-CchhH
Q 036345 251 IEA-------LEG-SASNLGELQSLLQRIQTS-IAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTT-RKKTV 320 (954)
Q Consensus 251 ~~~-------l~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~~v 320 (954)
... +.+ ......+..++...+... ..+++-++|+|++..-+......|...+......+.+|++| ....+
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 000 000 000111222222222111 13455589999997666666777887776655566666554 44444
Q ss_pred Hhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh-HHHHHHHhh
Q 036345 321 AQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP-LAAKTIGSL 384 (954)
Q Consensus 321 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~ 384 (954)
...+ .....+++++++.++....+...+-..+..-+ .+....|++.++|.. .|+..+-.+
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4332 23568899999999988888765532221111 455667999999966 454544333
No 143
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=1.7e-05 Score=56.74 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=21.4
Q ss_pred cCceeeccCcccccccccccCCCCccEEeccccCCCccc
Q 036345 616 HLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRL 654 (954)
Q Consensus 616 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l 654 (954)
+|++|++++|.|+.+|..+++|++|++|++++|. ++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 4566666666666666556666666666666655 4433
No 144
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=7.9e-06 Score=81.55 Aligned_cols=202 Identities=22% Similarity=0.227 Sum_probs=121.2
Q ss_pred cCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccc----cccccccCCCCccEEeccccCCCc--cccc
Q 036345 583 DQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLE----ELPETCCELVNLQTLDIEACGSLK--RLPQ 656 (954)
Q Consensus 583 ~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~----~lp~~i~~L~~L~~L~L~~~~~l~--~lp~ 656 (954)
..+.+++.|||.+|.++ .+.++...+.+|++|++|+|++|.+. .+| -.+.||++|-|.++. +. ....
T Consensus 68 ~~~~~v~elDL~~N~iS---dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~-L~w~~~~s 140 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLIS---DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG-LSWTQSTS 140 (418)
T ss_pred HHhhhhhhhhcccchhc---cHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC-CChhhhhh
Confidence 56889999999999665 56666666779999999999999754 454 356789999998876 32 3334
Q ss_pred cccCCCCCCEEeccCccccccCC---CCCCCC-CCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCcccccc
Q 036345 657 GIGKLVNLRHLMISHNVYLDYMP---KGIERL-TCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKN 732 (954)
Q Consensus 657 ~i~~l~~L~~L~l~~~~~~~~~p---~~i~~L-~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~ 732 (954)
.+..++.++.|+++.|+. ..+- ..+... +.+.+|.... .+ .......+
T Consensus 141 ~l~~lP~vtelHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~~~------------c~---------------~~~w~~~~ 192 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQLP------------CL---------------EQLWLNKN 192 (418)
T ss_pred hhhcchhhhhhhhccchh-hhhccccccccccchhhhhhhcCC------------cH---------------HHHHHHHH
Confidence 466777778887776632 1110 001111 0122221100 00 00000011
Q ss_pred ccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCC--CcchhcccCccEEEEeCcC
Q 036345 733 SELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVF--PSWIMSLCKLKVLLLSFCI 810 (954)
Q Consensus 733 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~L~~c~ 810 (954)
..-.-.+++.++.+..|...+. .--++..++|.+.-|+++.+.+.. . -..+..++.|+.|.+++++
T Consensus 193 ~l~r~Fpnv~sv~v~e~PlK~~-----------s~ek~se~~p~~~~LnL~~~~ids-wasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 193 KLSRIFPNVNSVFVCEGPLKTE-----------SSEKGSEPFPSLSCLNLGANNIDS-WASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred hHHhhcccchheeeecCcccch-----------hhcccCCCCCcchhhhhccccccc-HHHHHHHcCCchhheeeccCCc
Confidence 1112356777777776654321 123445667777788887776433 1 1113378899999999998
Q ss_pred CCCcCCC-------CCCCCCCceEeecC
Q 036345 811 KCEIMPP-------LGKLPSLEVLSIWN 831 (954)
Q Consensus 811 ~~~~l~~-------l~~l~~L~~L~L~~ 831 (954)
+.+.+.. ++.|++++.|+=+.
T Consensus 261 l~d~l~~~err~llIaRL~~v~vLNGsk 288 (418)
T KOG2982|consen 261 LSDPLRGGERRFLLIARLTKVQVLNGSK 288 (418)
T ss_pred ccccccCCcceEEEEeeccceEEecCcc
Confidence 8776643 57889999887654
No 145
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.78 E-value=0.0002 Score=86.44 Aligned_cols=156 Identities=17% Similarity=0.186 Sum_probs=85.9
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCc---cccccc-ceEEEEEeCCCCCHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDN---DVMNSF-EIRMWVCVSDPFDEFRVA 247 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~~f-~~~~wv~~s~~~~~~~~~ 247 (954)
.+++||+.++++++..|.... ..-+.++|++|+|||++|+.+++.- .+...+ ...+|.. + ...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-~----~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-D----MGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-c----HHHHh
Confidence 469999999999999886432 2346799999999999999887731 111111 2344421 1 11111
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHHh-cCceeEEEecCCCCCC---------ccChhhHHhhhcCCCCCcEEEEecCc
Q 036345 248 RAIIEALEGSASNLGELQSLLQRIQTSI-AGKKFLLVLDDMWTDD---------YSKWEPFNNCLMNGLRGSKILVTTRK 317 (954)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~---------~~~~~~l~~~l~~~~~gs~iiiTtr~ 317 (954)
. +. ....+.+.....+.+.+ ..++.+|++|+++.-. .+.-+.+...+.. ..-++|-+|..
T Consensus 251 a-------~~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~ 320 (731)
T TIGR02639 251 A-------GT-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTY 320 (731)
T ss_pred h-------hc-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCH
Confidence 1 00 01112233333333333 3467899999995321 1111223333322 12345545543
Q ss_pred hhHHhh-------hcCcceEeCCCCCHHHHHHHHHHHH
Q 036345 318 KTVAQM-------MESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 318 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
.+.... ......+++++++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 222111 1224579999999999999998644
No 146
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00075 Score=72.21 Aligned_cols=196 Identities=12% Similarity=0.113 Sum_probs=113.1
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCc---c---------c-ccccceEEEEEeC
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDN---D---------V-MNSFEIRMWVCVS 238 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~---------~-~~~f~~~~wv~~s 238 (954)
.+++|.+..++.+...+.... -.....++|+.|+||+++|..+.+.- . + ...+.-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 468999999999999887532 34789999999999999996664420 0 0 1122233454321
Q ss_pred CCCCHHHHHHHHHHHhh--cCCCCcccHHHHHHHHHHHh-----cCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEE
Q 036345 239 DPFDEFRVARAIIEALE--GSASNLGELQSLLQRIQTSI-----AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKI 311 (954)
Q Consensus 239 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 311 (954)
...+-..+-..-++..+ ......-.+++. +.+.+.+ .+++-++|+|++...+......+...+.... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 10000001011111111 000111122222 2233333 3566789999997767677778888776544 3455
Q ss_pred EEec-CchhHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 312 LVTT-RKKTVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 312 iiTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
|++| ....+...+ .....+++.++++++..+.+.+...... . ......++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~---~----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI---L----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc---c----hhHHHHHHHHcCCCHHHHHHH
Confidence 5554 444443333 3367899999999999999987642111 0 111346899999999776543
No 147
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.00046 Score=77.80 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=93.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCccccccc-c-eEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSF-E-IRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIA 276 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 276 (954)
..-+.|+|..|+|||+|++.+++. ..... . .++|++. .++..++...+... ..+. +.+..+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 345899999999999999999984 33322 2 4566653 34556666555322 1222 223333
Q ss_pred CceeEEEecCCCCC-CccCh-hhHHhhhcC-CCCCcEEEEecC-chhHH--------hhhcCcceEeCCCCCHHHHHHHH
Q 036345 277 GKKFLLVLDDMWTD-DYSKW-EPFNNCLMN-GLRGSKILVTTR-KKTVA--------QMMESTDVFSIKELSKQECWSLF 344 (954)
Q Consensus 277 ~kr~LlVlDdvw~~-~~~~~-~~l~~~l~~-~~~gs~iiiTtr-~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf 344 (954)
.+.-+|++||+... +...+ ..+...+.. ...|..||+||. .+.-. ..+.....+.+++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 34558999999532 11112 233333321 123456888874 33221 12333457899999999999999
Q ss_pred HHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 036345 345 KRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAA 378 (954)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 378 (954)
.+.+..... ..+ +++...|++.+.|.--.+
T Consensus 273 ~~~~~~~~~-~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHG-ELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCC-CCC---HHHHHHHHhccccCHHHH
Confidence 988743221 111 556777888888764443
No 148
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.0013 Score=74.06 Aligned_cols=154 Identities=19% Similarity=0.131 Sum_probs=87.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGK 278 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 278 (954)
..-+.|+|+.|+|||+|++.+++. .......+++++. ..+...+...+... .. ..+++..+ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 356889999999999999999984 3222233455542 33444555544321 11 22333333 3
Q ss_pred eeEEEecCCCCCCccCh--hhHHhhhcC-CCCCcEEEEecCc-hh--------HHhhhcCcceEeCCCCCHHHHHHHHHH
Q 036345 279 KFLLVLDDMWTDDYSKW--EPFNNCLMN-GLRGSKILVTTRK-KT--------VAQMMESTDVFSIKELSKQECWSLFKR 346 (954)
Q Consensus 279 r~LlVlDdvw~~~~~~~--~~l~~~l~~-~~~gs~iiiTtr~-~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 346 (954)
.-+|++||+.......| +.+...+.. ...|..||+||.. +. +...+.....+.+.+++.++...++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 44888999954322112 223333221 1235578888854 22 222233446889999999999999998
Q ss_pred HHcCCCCCCCchhHHHHHHHHHHhcCCC
Q 036345 347 FAFFGRHPSECEQLEEIGRKIVSRCKGL 374 (954)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~i~~~c~gl 374 (954)
++-...- .-+ .++..-|++.+.|.
T Consensus 283 k~~~~~~-~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSI-RIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhcCCC
Confidence 7744321 111 44555566666643
No 149
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.74 E-value=0.0016 Score=70.81 Aligned_cols=167 Identities=17% Similarity=0.167 Sum_probs=95.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAG 277 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 277 (954)
....+.|||..|.|||.|++++.+. ..........+.++ .......++..+... -...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~~v~a~~~~---------~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTNDFVKALRDN---------EMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHHHHHHHHhh---------hHHHHHHhh--
Confidence 4668999999999999999999984 44444433333333 234444444444321 123344444
Q ss_pred ceeEEEecCCCCCC-ccChhh-HHhhhcC-CCCCcEEEEecCch---------hHHhhhcCcceEeCCCCCHHHHHHHHH
Q 036345 278 KKFLLVLDDMWTDD-YSKWEP-FNNCLMN-GLRGSKILVTTRKK---------TVAQMMESTDVFSIKELSKQECWSLFK 345 (954)
Q Consensus 278 kr~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~iiiTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 345 (954)
.-=++++||++--. .+.|+. +...+.. ...|-.||+|++.. .+.+.+...-.+++.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 33388999995421 122332 3333332 12344899998553 234445566789999999999999999
Q ss_pred HHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 346 RFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
+++....-.-+.....-++..+-+-..-+.-|+..+
T Consensus 255 kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l 290 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRL 290 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 876543332232333333343333333344444433
No 150
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.0011 Score=76.97 Aligned_cols=193 Identities=16% Similarity=0.198 Sum_probs=107.8
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
-.+++|.+..++.+...+.... -.+.+.++|+.|+||||+|+.+.+.--....-+ ..+++.-..-..|
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i 82 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAI 82 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHH
Confidence 4679999999999999887532 356678899999999999988865210000000 0000100111111
Q ss_pred HHHhhc-----CCCCcccHH---HHHHHHHH-HhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEec-CchhH
Q 036345 251 IEALEG-----SASNLGELQ---SLLQRIQT-SIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTT-RKKTV 320 (954)
Q Consensus 251 ~~~l~~-----~~~~~~~~~---~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~~v 320 (954)
...... ........+ ++...+.. ...+++-++|+|++..-....+..|...+........+|++| ....+
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 000000 000011122 22222211 123566688999997655566777777666544455555555 43333
Q ss_pred Hhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHH
Q 036345 321 AQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAK 379 (954)
Q Consensus 321 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 379 (954)
...+ .....+++.+++.++....+...+-..+-.-+ .+....|++.++|.+..+.
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 3222 23567899999999998888876643221111 3556678889998776443
No 151
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.73 E-value=1.3e-05 Score=79.07 Aligned_cols=253 Identities=20% Similarity=0.156 Sum_probs=137.8
Q ss_pred CCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccc----ccc-------ccccCCCCccEEeccccCCCcc
Q 036345 585 LTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLE----ELP-------ETCCELVNLQTLDIEACGSLKR 653 (954)
Q Consensus 585 l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~----~lp-------~~i~~L~~L~~L~L~~~~~l~~ 653 (954)
+..+..++||||.++.. ....+...|.+-.+|+..+++.-... ++| +.+-+|++||+.+|+.|-.-..
T Consensus 29 ~d~~~evdLSGNtigtE-A~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTE-AMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHH-HHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 45555566666643321 11233344445555666655543211 222 3456788888888888875555
Q ss_pred cccc----ccCCCCCCEEeccCccccccCCC-CCCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCcc
Q 036345 654 LPQG----IGKLVNLRHLMISHNVYLDYMPK-GIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVD 728 (954)
Q Consensus 654 lp~~----i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~ 728 (954)
.|+. |.+-+.|.||.+++|-. ..+-. .|++ .|++|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigk--al~~l------------------------------------- 147 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGK--ALFHL------------------------------------- 147 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCC-CccchhHHHH--HHHHH-------------------------------------
Confidence 5543 56778899999987732 22111 0110 11111
Q ss_pred ccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcch--------hcccC
Q 036345 729 EAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWI--------MSLCK 800 (954)
Q Consensus 729 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~--------~~l~~ 800 (954)
+.+......+.|+++.+..|++.. .........++.+.+|+.+.+..|.+. |..+ ..+.+
T Consensus 148 -a~nKKaa~kp~Le~vicgrNRlen--------gs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~ 215 (388)
T COG5238 148 -AYNKKAADKPKLEVVICGRNRLEN--------GSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHS 215 (388)
T ss_pred -HHHhhhccCCCceEEEeccchhcc--------CcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCc
Confidence 111223456778888777776542 223334445666778888888888764 4422 25778
Q ss_pred ccEEEEeCcCCCCcCC-----CCCCCCCCceEeecCCCCceEeCc-ccccCCCCCCCCcCCcccccCcccceeecccccc
Q 036345 801 LKVLLLSFCIKCEIMP-----PLGKLPSLEVLSIWNMNSVKTVGD-EFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYE 874 (954)
Q Consensus 801 L~~L~L~~c~~~~~l~-----~l~~l~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~ 874 (954)
|+.|+|.+|.++..-. .+..++.|+.|.+.+|- ++.-+. .++.. .....+|+|..|.+.+...
T Consensus 216 LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~----------f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 216 LEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRR----------FNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred ceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHHHH----------hhhhcCCCccccccchhhh
Confidence 8899998887643221 25567788999988887 433221 11110 0022567777777665321
Q ss_pred ccccccc--c-ccccccccccceecccccc
Q 036345 875 WEEWDFG--E-EDNITVMPQLNSLKIENCS 901 (954)
Q Consensus 875 l~~~~~~--~-~~~~~~~p~L~~L~l~~c~ 901 (954)
-..+... . ...-..+|-|..|.+.+|.
T Consensus 285 ~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 285 RGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred cCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 0000000 0 0001267888888888774
No 152
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.0019 Score=64.29 Aligned_cols=183 Identities=17% Similarity=0.217 Sum_probs=108.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEe-CCCCCHHHHHHHHHHHhhcCCCCc--ccHHHHHHHHHH
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCV-SDPFDEFRVARAIIEALEGSASNL--GELQSLLQRIQT 273 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~ 273 (954)
++.+++.|+|.-|.|||.+.+..... ..+ +.++-|.+ ....+...+...|+..+..+.... ...+.....+..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 35569999999999999999944321 000 11222333 345677788888888887732211 112333333444
Q ss_pred Hh-cCce-eEEEecCCCCCCccChhhHHhhhcCCCCCc---EEEEecCch-------hHHhhhcC-cce-EeCCCCCHHH
Q 036345 274 SI-AGKK-FLLVLDDMWTDDYSKWEPFNNCLMNGLRGS---KILVTTRKK-------TVAQMMES-TDV-FSIKELSKQE 339 (954)
Q Consensus 274 ~l-~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs---~iiiTtr~~-------~v~~~~~~-~~~-~~l~~L~~~~ 339 (954)
.. +++| ..+++||......+..+.++-.......++ +|+..-..+ .+....+. ... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 33 5777 999999997666566666554432221222 233322211 11111111 233 9999999999
Q ss_pred HHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhh
Q 036345 340 CWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSL 384 (954)
Q Consensus 340 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 384 (954)
...++..+..+...+.+- --.+....|.....|.|.+|..++..
T Consensus 205 t~~yl~~~Le~a~~~~~l-~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPL-FSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHhccCCCccc-CChhHHHHHHHHhccchHHHHHHHHH
Confidence 999999887655332211 12455667999999999999887654
No 153
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=3.3e-05 Score=55.22 Aligned_cols=41 Identities=24% Similarity=0.483 Sum_probs=34.5
Q ss_pred CceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccc
Q 036345 586 TFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPE 632 (954)
Q Consensus 586 ~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~ 632 (954)
++|++|++++| .+..+|..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N------~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN------QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS------S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC------CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46899999999 888898889999999999999999987753
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.72 E-value=0.00023 Score=87.02 Aligned_cols=154 Identities=19% Similarity=0.150 Sum_probs=85.6
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcc---ccccc-ceEEEEEeCCCCCHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDND---VMNSF-EIRMWVCVSDPFDEFRVA 247 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~s~~~~~~~~~ 247 (954)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++..-. +.... ...+|.- +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHh
Confidence 468999999999999997532 22456999999999999988877311 11111 2344531 111111
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHH-hcCceeEEEecCCCCCC-------ccChhh-HHhhhcCCCCCcEEEEecCch
Q 036345 248 RAIIEALEGSASNLGELQSLLQRIQTS-IAGKKFLLVLDDMWTDD-------YSKWEP-FNNCLMNGLRGSKILVTTRKK 318 (954)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~-------~~~~~~-l~~~l~~~~~gs~iiiTtr~~ 318 (954)
.+.. ...+.++....+.+. ...++.+|++|+++.-. ...... +...+.. ..-++|-+|...
T Consensus 248 -------ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ 317 (821)
T CHL00095 248 -------AGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLD 317 (821)
T ss_pred -------ccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHH
Confidence 1111 112233333333332 23568999999995210 011122 2222222 234566666555
Q ss_pred hHHhh-------hcCcceEeCCCCCHHHHHHHHHH
Q 036345 319 TVAQM-------MESTDVFSIKELSKQECWSLFKR 346 (954)
Q Consensus 319 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~ 346 (954)
..... ......+.+...+.++...++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 43221 12245788999999998888865
No 155
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.00095 Score=71.86 Aligned_cols=97 Identities=10% Similarity=0.117 Sum_probs=68.0
Q ss_pred CceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchh-HHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCC
Q 036345 277 GKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKT-VAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHP 354 (954)
Q Consensus 277 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 354 (954)
+++-++|+|++...+......+...+.....++.+|+||.+.. +... ......+.+.+++.+++.+.+.... ...
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC--
Confidence 4444567899988777888888888876656777887777653 3323 2335689999999999999887653 111
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 355 SECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 355 ~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
. .+.+..++..++|.|+.+..+
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 233456789999999866554
No 156
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.67 E-value=5.5e-06 Score=93.55 Aligned_cols=105 Identities=23% Similarity=0.297 Sum_probs=69.9
Q ss_pred ccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCccccccccccc
Q 036345 556 YAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETCC 635 (954)
Q Consensus 556 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~ 635 (954)
.+..+..+.+..+. +.. ....+..++.|..|++.+| .+..+...+..+.+|++|+|++|.|+.+. .+.
T Consensus 70 ~l~~l~~l~l~~n~----i~~-~~~~l~~~~~l~~l~l~~n------~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~ 137 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL----IAK-ILNHLSKLKSLEALDLYDN------KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLS 137 (414)
T ss_pred HhHhHHhhccchhh----hhh-hhcccccccceeeeecccc------chhhcccchhhhhcchheecccccccccc-chh
Confidence 34455555555553 222 1223567778888888887 66666554777888888888888887774 566
Q ss_pred CCCCccEEeccccCCCccccccccCCCCCCEEeccCccc
Q 036345 636 ELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVY 674 (954)
Q Consensus 636 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 674 (954)
.+..|+.|++.+|. +..++ ++..+++|+.+++++|..
T Consensus 138 ~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 138 TLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRI 174 (414)
T ss_pred hccchhhheeccCc-chhcc-CCccchhhhcccCCcchh
Confidence 77778888888876 66554 356677778887777743
No 157
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.66 E-value=0.001 Score=75.86 Aligned_cols=158 Identities=15% Similarity=0.133 Sum_probs=92.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCccccccc--ceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSF--EIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIA 276 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 276 (954)
..-+.|+|+.|+|||+|++.+++. ....+ ..+++++.. ++...+...+... ..+ .+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHHh
Confidence 356899999999999999999984 33333 235566543 3344444444321 112 2333333
Q ss_pred CceeEEEecCCCCCCccC-h-hhHHhhhcC-CCCCcEEEEecCchh---------HHhhhcCcceEeCCCCCHHHHHHHH
Q 036345 277 GKKFLLVLDDMWTDDYSK-W-EPFNNCLMN-GLRGSKILVTTRKKT---------VAQMMESTDVFSIKELSKQECWSLF 344 (954)
Q Consensus 277 ~kr~LlVlDdvw~~~~~~-~-~~l~~~l~~-~~~gs~iiiTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf 344 (954)
+.-+|||||+....... + +.+...+.. ...|..||+||.... +...+.....+++++.+.++...++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 34489999995421111 1 233332221 123455788776431 1222344458999999999999999
Q ss_pred HHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 036345 345 KRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAA 378 (954)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 378 (954)
.+.+..... .. -+++...|++.+.|..-.+
T Consensus 290 ~~~~~~~~~-~l---~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 290 KKKAEEEGI-DL---PDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHcCC-CC---CHHHHHHHHcCcCCCHHHH
Confidence 998753221 11 2456777999998876643
No 158
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.66 E-value=0.0013 Score=75.17 Aligned_cols=156 Identities=12% Similarity=0.110 Sum_probs=91.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccccc--ceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSF--EIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAG 277 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 277 (954)
..+.|+|..|+|||.|++.+++. ....+ ..+++++. .++..++...+... .. ..+++.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~----~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KG----DSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cH----HHHHHHhhc
Confidence 34899999999999999999984 32222 23456553 33444444443221 11 123233322
Q ss_pred ceeEEEecCCCCCCc-cChhh-HHhhhcC-CCCCcEEEEecCch---------hHHhhhcCcceEeCCCCCHHHHHHHHH
Q 036345 278 KKFLLVLDDMWTDDY-SKWEP-FNNCLMN-GLRGSKILVTTRKK---------TVAQMMESTDVFSIKELSKQECWSLFK 345 (954)
Q Consensus 278 kr~LlVlDdvw~~~~-~~~~~-l~~~l~~-~~~gs~iiiTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 345 (954)
-=+|||||+..... ..|.. +...+.. ...|..|||||+.. .+...+...-.+++++.+.+.-..++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 24788999954321 22322 3333322 13355688888753 233334556689999999999999999
Q ss_pred HHHcCCCCCCCchhHHHHHHHHHHhcCCChHH
Q 036345 346 RFAFFGRHPSECEQLEEIGRKIVSRCKGLPLA 377 (954)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 377 (954)
+++....- ..+ .++..-|++.+.+..-.
T Consensus 457 kka~~r~l-~l~---~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 457 KKAVQEQL-NAP---PEVLEFIASRISRNIRE 484 (617)
T ss_pred HHHHhcCC-CCC---HHHHHHHHHhccCCHHH
Confidence 88754322 111 45666677777665433
No 159
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.63 E-value=0.00022 Score=66.24 Aligned_cols=97 Identities=22% Similarity=0.084 Sum_probs=53.3
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcC-cee
Q 036345 202 ISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAG-KKF 280 (954)
Q Consensus 202 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~ 280 (954)
|.|+|++|+||||+|+.+++. ... ..+.++.+. +... ........+...+.+.-+. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~---~~~~i~~~~--------------~~~~-~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGF---PFIEIDGSE--------------LISS-YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTS---EEEEEETTH--------------HHTS-STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhh--ccc---ccccccccc--------------cccc-cccccccccccccccccccccce
Confidence 579999999999999999984 221 133444332 1100 1112223333334343333 389
Q ss_pred EEEecCCCCCCccC-----------hhhHHhhhcCCC---CCcEEEEecCch
Q 036345 281 LLVLDDMWTDDYSK-----------WEPFNNCLMNGL---RGSKILVTTRKK 318 (954)
Q Consensus 281 LlVlDdvw~~~~~~-----------~~~l~~~l~~~~---~gs~iiiTtr~~ 318 (954)
+|++||+..-.... ...+...+.... .+..||.||...
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 99999995433222 334444444432 245667777653
No 160
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0014 Score=73.90 Aligned_cols=167 Identities=13% Similarity=0.154 Sum_probs=96.2
Q ss_pred cCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARA 249 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 249 (954)
-+.+.+|.++-+++|++++.-..-...-+.++++.+|++|||||++|+.+++ .....| +-++|+.-.|+.++-..
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhccc
Confidence 3566899999999999988654322244678999999999999999999987 333333 23456665555543211
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCc----cChhhHHhhhcCC-C------------CCcEEE
Q 036345 250 IIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDY----SKWEPFNNCLMNG-L------------RGSKIL 312 (954)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~----~~~~~l~~~l~~~-~------------~gs~ii 312 (954)
.....+.. ...+++.+++. +-..-|+.||.|..-.. +--..+...+.+. + -=|+|+
T Consensus 484 -----RRTYVGAM-PGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 484 -----RRTYVGAM-PGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred -----ceeeeccC-ChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 11111111 12344444433 34456888998843110 0112233333221 1 125665
Q ss_pred EecCchhHHh----hhcCcceEeCCCCCHHHHHHHHHHHH
Q 036345 313 VTTRKKTVAQ----MMESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 313 iTtr~~~v~~----~~~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
+...-..+.. ..+....+++.+...+|-..+-.++.
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 4332222211 12446789999999999888877765
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.61 E-value=0.00043 Score=84.96 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=84.0
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccc------cceEEEEEeCCCCCHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNS------FEIRMWVCVSDPFDEFR 245 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~wv~~s~~~~~~~ 245 (954)
..++||+.++++++..|.... ..-+.++|++|+|||++|+.++.. +... ....+|.. +...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHH
Confidence 469999999999999986432 234568999999999999988773 2111 12233321 1111
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHHHh-c-CceeEEEecCCCCCCc-----c--ChhhHHhhhcCCCCC-cEEEEec
Q 036345 246 VARAIIEALEGSASNLGELQSLLQRIQTSI-A-GKKFLLVLDDMWTDDY-----S--KWEPFNNCLMNGLRG-SKILVTT 315 (954)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdvw~~~~-----~--~~~~l~~~l~~~~~g-s~iiiTt 315 (954)
++. +. ....+.+.....+.+.+ + +++.+|++|+++.-.. . +...+.. +....| -++|-+|
T Consensus 240 l~a-------~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk--~~l~~g~i~~IgaT 309 (852)
T TIGR03346 240 LIA-------GA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLK--PALARGELHCIGAT 309 (852)
T ss_pred Hhh-------cc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhc--hhhhcCceEEEEeC
Confidence 110 00 01112222223333333 2 4689999999963210 0 1111111 122223 3455555
Q ss_pred CchhHHhh-------hcCcceEeCCCCCHHHHHHHHHHHH
Q 036345 316 RKKTVAQM-------MESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 316 r~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
........ ......+.++..+.++...++....
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 54433221 1224578899999999999987653
No 162
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0014 Score=74.39 Aligned_cols=167 Identities=17% Similarity=0.204 Sum_probs=97.0
Q ss_pred cCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARA 249 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 249 (954)
-+.+.+|.++.+++|++.|.-..-...-...++++||++|||||+|++.+++ .....| +-+.++.--|..++-..
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGH 395 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGH 395 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhccc
Confidence 3467899999999999988644322133457999999999999999999988 344444 22345544444432111
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCcc----ChhhHHhhhcCC-CC------------CcEE-
Q 036345 250 IIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYS----KWEPFNNCLMNG-LR------------GSKI- 311 (954)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~----~~~~l~~~l~~~-~~------------gs~i- 311 (954)
.....+... ..+.+.+++. +.+.-+++||.+.....+ --..+...|.+. ++ =|.|
T Consensus 396 -----RRTYIGamP-GrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 396 -----RRTYIGAMP-GKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred -----cccccccCC-hHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 111111111 2334444333 456779999998432111 112233333221 11 1334
Q ss_pred EEecCch-h-H-HhhhcCcceEeCCCCCHHHHHHHHHHHH
Q 036345 312 LVTTRKK-T-V-AQMMESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 312 iiTtr~~-~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
.|||-+. + + +..++...++++.+.+++|-.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4555432 1 2 2234557899999999999988887765
No 163
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.57 E-value=0.001 Score=73.89 Aligned_cols=147 Identities=19% Similarity=0.224 Sum_probs=86.3
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCcee
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKF 280 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 280 (954)
++.|.|+-++||||+++.+... .... .+++...+......-+.+ ....+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d-----------------~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLD-----------------LLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHH-----------------HHHHHHHhhccCCc
Confidence 9999999999999999777663 1111 444443321111111111 11112222122778
Q ss_pred EEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHHhh-----h-cCcceEeCCCCCHHHHHHHHHHHHcCCCCC
Q 036345 281 LLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQM-----M-ESTDVFSIKELSKQECWSLFKRFAFFGRHP 354 (954)
Q Consensus 281 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~-----~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 354 (954)
.++||.| .....|......+.+.++. +|++|+.+...... . +....+++-|||..|...+-...+
T Consensus 97 yifLDEI--q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~------ 167 (398)
T COG1373 97 YIFLDEI--QNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI------ 167 (398)
T ss_pred eEEEecc--cCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc------
Confidence 9999999 4567898877777776555 88888877654332 2 335689999999999876543000
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHH
Q 036345 355 SECEQLEEIGRKIVSRCKGLPLAAKT 380 (954)
Q Consensus 355 ~~~~~~~~~~~~i~~~c~glPlai~~ 380 (954)
..... ...-+-.-..||.|-++..
T Consensus 168 -~~~~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 168 -EPSKL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred -chhHH-HHHHHHHHHhCCCcHHHhC
Confidence 00011 1122234456888887754
No 164
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=3.6e-05 Score=77.00 Aligned_cols=199 Identities=14% Similarity=0.131 Sum_probs=117.4
Q ss_pred ccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCC--C
Q 036345 736 DKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKC--E 813 (954)
Q Consensus 736 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~--~ 813 (954)
..+++++.|+|.||... ...++...+..+|.|+.|+|+.|.....+-.-.....+|+.|.|.+..+. .
T Consensus 68 ~~~~~v~elDL~~N~iS----------dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~ 137 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLIS----------DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQ 137 (418)
T ss_pred HHhhhhhhhhcccchhc----------cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhh
Confidence 35678899999998643 35556667788999999999999876533221124569999999988642 1
Q ss_pred cCCCCCCCCCCceEeecCCCCceEeCcccccCCCCC--CCC------------cCCcccccCcccceeeccccccccccc
Q 036345 814 IMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDN--GTS------------ATSSVNVAFRKLKELAFWGLYEWEEWD 879 (954)
Q Consensus 814 ~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~--~~~------------~~~~~~~~f~~L~~L~l~~~~~l~~~~ 879 (954)
.-..+..+|.++.|+++.|. +..+..+--...... ..+ .......-||++..+.+..|| ++...
T Consensus 138 ~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s 215 (418)
T KOG2982|consen 138 STSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTES 215 (418)
T ss_pred hhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchh
Confidence 22236778888888888874 222211110000000 000 000011246666666666665 34443
Q ss_pred cccccccccccccceecccccccCcCCC--CCCCCCCCcceEEEecCcchhhhhccCCCCCccccccccccccC
Q 036345 880 FGEEDNITVMPQLNSLKIENCSKLKSLP--DQLLRSTTLENLEIKKCPIVKESFRRYTREDWSKMFHIPNILID 951 (954)
Q Consensus 880 ~~~~~~~~~~p~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~ip~i~i~ 951 (954)
.. .+...+|.+..|+++.+ ++.++- +.+..++.|..|.+.++|... ..+. +...+..|+.+|++++-
T Consensus 216 ~e--k~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d-~l~~-~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 216 SE--KGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSD-PLRG-GERRFLLIARLTKVQVL 284 (418)
T ss_pred hc--ccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccc-cccC-CcceEEEEeeccceEEe
Confidence 33 44456777777766665 243221 235568899999999999543 3322 23345567778877763
No 165
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=2.9e-05 Score=91.44 Aligned_cols=131 Identities=24% Similarity=0.251 Sum_probs=93.5
Q ss_pred CCceEEEEEEecccc--CCccc-ccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh
Q 036345 534 KEKLYHLMLMINLFS--TFPVS-IRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE 610 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~--~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~ 610 (954)
..++++|++.+...- .+|.. -.-+|.|++|.+.+-.. ..+.+...+.+|++|++||++++ ++..+ ..
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~---~~~dF~~lc~sFpNL~sLDIS~T------nI~nl-~G 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF---DNDDFSQLCASFPNLRSLDISGT------NISNL-SG 190 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee---cchhHHHHhhccCccceeecCCC------CccCc-HH
Confidence 567788888764422 12333 24689999999988541 11223455689999999999999 77777 77
Q ss_pred hhccCcCceeeccCcccccc--cccccCCCCccEEeccccCCCccc--c----ccccCCCCCCEEeccCccc
Q 036345 611 IEKLKHLRFLKLSQVDLEEL--PETCCELVNLQTLDIEACGSLKRL--P----QGIGKLVNLRHLMISHNVY 674 (954)
Q Consensus 611 i~~L~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~~~~l~~l--p----~~i~~l~~L~~L~l~~~~~ 674 (954)
|++|++|+.|.+.+-.+..- -..+..|++|+.||+|.......- . +.-..|++||.||.+++..
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 99999999999998777642 245788999999999986633221 1 1123489999999998744
No 166
>PRK08116 hypothetical protein; Validated
Probab=97.54 E-value=0.00029 Score=73.71 Aligned_cols=104 Identities=24% Similarity=0.267 Sum_probs=60.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCce
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKK 279 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 279 (954)
..+.++|..|+|||+||..+++. ...+...+++++ ..+++..+........ ..+. ..+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~----~~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDE----NEIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccH----HHHHHHhcCCC
Confidence 35889999999999999999985 332334456665 3345555544433211 1111 12233344333
Q ss_pred eEEEecCCCCCCccChhh--HHhhhcC-CCCCcEEEEecCch
Q 036345 280 FLLVLDDMWTDDYSKWEP--FNNCLMN-GLRGSKILVTTRKK 318 (954)
Q Consensus 280 ~LlVlDdvw~~~~~~~~~--l~~~l~~-~~~gs~iiiTtr~~ 318 (954)
||||||+..+....|.. +...+.. -..|..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996544445543 4333332 13456789998653
No 167
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.54 E-value=0.0013 Score=74.30 Aligned_cols=166 Identities=13% Similarity=0.228 Sum_probs=90.1
Q ss_pred CCceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccc-----cceEEEEEeC
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNS-----FEIRMWVCVS 238 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~s 238 (954)
-.++.|.+..++++.+.+..+-.. .-...+-+.++|++|+|||++|+.+++. .... .....|+.+.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEecc
Confidence 356889999999988876421100 0123456899999999999999999984 2222 1223445444
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHh-cCceeEEEecCCCCCC-------ccCh-----hhHHhhhcC-
Q 036345 239 DPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSI-AGKKFLLVLDDMWTDD-------YSKW-----EPFNNCLMN- 304 (954)
Q Consensus 239 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~-------~~~~-----~~l~~~l~~- 304 (954)
.. +++....+. ....+..+.+..++.. .+++++|+||+++.-- ..+. ..+...+..
T Consensus 259 ~~--------eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 259 GP--------ELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred ch--------hhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 31 111111000 0011112222222221 3578999999995310 0111 123222222
Q ss_pred -CCCCcEEEEecCchhHHh-h-hc--C-cceEeCCCCCHHHHHHHHHHHH
Q 036345 305 -GLRGSKILVTTRKKTVAQ-M-ME--S-TDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 305 -~~~gs~iiiTtr~~~v~~-~-~~--~-~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
...+..||.||....... . .. . ...++++..+.++..++|..+.
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 123455666665544322 1 11 1 4468999999999999999876
No 168
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.50 E-value=2.5e-05 Score=88.30 Aligned_cols=120 Identities=23% Similarity=0.303 Sum_probs=90.0
Q ss_pred EEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCce
Q 036345 540 LMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRF 619 (954)
Q Consensus 540 L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~ 619 (954)
+++..+.+......+..+.+|..|++.++. +.. +...+..+++|++|++++| .|..+ ..+..+..|+.
T Consensus 77 l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~----i~~-i~~~l~~~~~L~~L~ls~N------~I~~i-~~l~~l~~L~~ 144 (414)
T KOG0531|consen 77 LNLRQNLIAKILNHLSKLKSLEALDLYDNK----IEK-IENLLSSLVNLQVLDLSFN------KITKL-EGLSTLTLLKE 144 (414)
T ss_pred hccchhhhhhhhcccccccceeeeeccccc----hhh-cccchhhhhcchheecccc------ccccc-cchhhccchhh
Confidence 334555555433446778899999999986 333 2222677999999999999 66666 34778888999
Q ss_pred eeccCcccccccccccCCCCccEEeccccCCCcccccc-ccCCCCCCEEeccCcc
Q 036345 620 LKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQG-IGKLVNLRHLMISHNV 673 (954)
Q Consensus 620 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 673 (954)
|++++|.|..++ .+..+++|+.+++++|. +..+... +..+.+|+.+.+.+|.
T Consensus 145 L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 145 LNLSGNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred heeccCcchhcc-CCccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCc
Confidence 999999998775 44559999999999988 6666543 5778889999888874
No 169
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.50 E-value=0.0005 Score=79.72 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=41.3
Q ss_pred ccCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 169 INVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
....+++|-+..++++..++....-. ....+++.|+|++|+||||+++.++..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999888654321 223468999999999999999999874
No 170
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00069 Score=80.75 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=86.5
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCc---ccccc-cceEEEEEeCCCCCHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDN---DVMNS-FEIRMWVCVSDPFDEFRVA 247 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~~-f~~~~wv~~s~~~~~~~~~ 247 (954)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.++... .+... .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-
Confidence 469999999999999887632 1234689999999999999987631 01111 13344421 11111
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHHh-cCceeEEEecCCCCC--------CccChhhHHhhhcCCCCCcEEEEecCch
Q 036345 248 RAIIEALEGSASNLGELQSLLQRIQTSI-AGKKFLLVLDDMWTD--------DYSKWEPFNNCLMNGLRGSKILVTTRKK 318 (954)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~--------~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 318 (954)
+ .+. ....+.+.....+.+.+ +.++.+|++|++..- ...+...+..++... ..-++|-+|...
T Consensus 254 ---l---aG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 254 ---L---AGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred ---h---ccc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 1 111 01112233333333333 356789999999531 011122222222221 234555555544
Q ss_pred hHHhh-------hcCcceEeCCCCCHHHHHHHHHHHH
Q 036345 319 TVAQM-------MESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 319 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
+.... ..-...+.++..+.++..+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 43221 1223589999999999999998643
No 171
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.47 E-value=0.00057 Score=64.31 Aligned_cols=87 Identities=22% Similarity=0.156 Sum_probs=46.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCc-
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGK- 278 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 278 (954)
..+.|+|++|+||||+|+.++.. .......++++..+........... ........ ...........+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK-ASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccC-CCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999884 2222223555554443222222111 11111111 1112222233344444433
Q ss_pred eeEEEecCCCCC
Q 036345 279 KFLLVLDDMWTD 290 (954)
Q Consensus 279 r~LlVlDdvw~~ 290 (954)
..++++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 489999999654
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.46 E-value=0.00099 Score=81.45 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=82.9
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcc---cccc-cceEE-EEEeCCCCCHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDND---VMNS-FEIRM-WVCVSDPFDEFRV 246 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~-f~~~~-wv~~s~~~~~~~~ 246 (954)
.+++||+.++++++..|.... ..-+.++|++|+|||++|+.+...-. +... ....+ ++.++. +
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------h
Confidence 469999999999999997532 23466999999999999988877311 0000 12222 232221 1
Q ss_pred HHHHHHHhhcCCCCcccHHH-HHHHHHHHh-cCceeEEEecCCCCCCcc-------Chhh-HHhhhcCCCCCcEEEEecC
Q 036345 247 ARAIIEALEGSASNLGELQS-LLQRIQTSI-AGKKFLLVLDDMWTDDYS-------KWEP-FNNCLMNGLRGSKILVTTR 316 (954)
Q Consensus 247 ~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l-~~kr~LlVlDdvw~~~~~-------~~~~-l~~~l~~~~~gs~iiiTtr 316 (954)
+. +. ....+.+. +...+.+.. .+++.+|++|+++.-... +... +...+.. ..-++|-||.
T Consensus 246 ~a-------g~-~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt 315 (857)
T PRK10865 246 VA-------GA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 315 (857)
T ss_pred hh-------cc-chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCC
Confidence 10 00 01111222 222222221 256899999999542110 1112 2222221 2345665655
Q ss_pred chhHHhh-------hcCcceEeCCCCCHHHHHHHHHHHH
Q 036345 317 KKTVAQM-------MESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 317 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
....... ..-...+.+..-+.++...++....
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 5443211 1123466777778999999886543
No 173
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.43 E-value=0.0043 Score=75.56 Aligned_cols=165 Identities=16% Similarity=0.194 Sum_probs=86.1
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAII 251 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 251 (954)
.+++|.+..+++|.+++............++.++|++|+|||++|+.+++. ....|- -+.++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHcCC--
Confidence 458999999999988765331111123347999999999999999999884 333332 1223332232222110
Q ss_pred HHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccC----hhhHHhhhcC--------C-------CCCcEEE
Q 036345 252 EALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSK----WEPFNNCLMN--------G-------LRGSKIL 312 (954)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~----~~~l~~~l~~--------~-------~~gs~ii 312 (954)
.....+ .....+.+.+... ..++-+|+||++....... ...+...+.. . ..+..+|
T Consensus 393 ---~~~~~g-~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ---RRTYVG-AMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ---CCceeC-CCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 000000 1112233333333 2333478999995432211 1223322211 0 1233444
Q ss_pred EecCchh-HHhh-hcCcceEeCCCCCHHHHHHHHHHHH
Q 036345 313 VTTRKKT-VAQM-MESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 313 iTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
.||.... +... .+....+++.+++.++-.+++.++.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5554432 1111 2334588999999999888887654
No 174
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.43 E-value=0.0006 Score=75.84 Aligned_cols=158 Identities=13% Similarity=0.159 Sum_probs=88.0
Q ss_pred CceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
.++.|.+..+++|.+.+..+-.. .-...+-+.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 46789999998888776422110 0123456889999999999999999984 33333 2222111
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCC--------Cc---cChhhHHhhh---cC--CCCC
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTD--------DY---SKWEPFNNCL---MN--GLRG 308 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~--------~~---~~~~~l~~~l---~~--~~~g 308 (954)
+ .....+. ....+...+.......+.+|+||++..- .. .....+...+ .. ...+
T Consensus 253 -L----~~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -L----IQKYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -h----hhhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1 1111110 1111222222233456789999997321 00 0011122222 11 1346
Q ss_pred cEEEEecCchhHHhh-h-c---CcceEeCCCCCHHHHHHHHHHHHc
Q 036345 309 SKILVTTRKKTVAQM-M-E---STDVFSIKELSKQECWSLFKRFAF 349 (954)
Q Consensus 309 s~iiiTtr~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~ 349 (954)
.+||.||........ + . -...+++...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888876543332 1 1 145789999999999999997763
No 175
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=5.5e-05 Score=89.06 Aligned_cols=111 Identities=23% Similarity=0.248 Sum_probs=78.4
Q ss_pred ccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCccccccccccc
Q 036345 556 YAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETCC 635 (954)
Q Consensus 556 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~ 635 (954)
.-.+|+.|++.|...+ ..+++...-.-+|.||.|.+++-.+.. +++-.-..++++|+.||+|+|.++.+ ..++
T Consensus 120 sr~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~----~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS 192 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDN----DDFSQLCASFPNLRSLDISGTNISNL-SGIS 192 (699)
T ss_pred HHHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecc----hhHHHHhhccCccceeecCCCCccCc-HHHh
Confidence 3457899999886532 223333444568999999999864321 22223356889999999999999988 7899
Q ss_pred CCCCccEEeccccCCCcccc--ccccCCCCCCEEeccCccc
Q 036345 636 ELVNLQTLDIEACGSLKRLP--QGIGKLVNLRHLMISHNVY 674 (954)
Q Consensus 636 ~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~ 674 (954)
+|+|||+|.+++-. ...-+ ..+.+|++|++||+|....
T Consensus 193 ~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred ccccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccccc
Confidence 99999999998744 33222 2467899999999987643
No 176
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0049 Score=65.70 Aligned_cols=96 Identities=10% Similarity=0.107 Sum_probs=67.7
Q ss_pred CceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCc-hhHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCC
Q 036345 277 GKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRK-KTVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHP 354 (954)
Q Consensus 277 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 354 (954)
+++-++|+|++...+...-..+...+.....++.+|++|.. ..+...+ .-...+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~-- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V-- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C--
Confidence 56679999999776666777788777766667777777765 3343332 335689999999999988887531 1
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHH
Q 036345 355 SECEQLEEIGRKIVSRCKGLPLAAKTIG 382 (954)
Q Consensus 355 ~~~~~~~~~~~~i~~~c~glPlai~~~~ 382 (954)
. ...+..++..++|.|+.+..+.
T Consensus 187 -~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2225668999999999765443
No 177
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.41 E-value=0.0051 Score=75.69 Aligned_cols=138 Identities=16% Similarity=0.256 Sum_probs=79.1
Q ss_pred CceeechhhhhHHHHHhhccCCC---CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQ---QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
..++|.+..++.+.+.+.....+ +.....++.++|+.|+|||++|+.+... ....-...+.++.+.-.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 46899999999999988754211 1223567889999999999999998873 111112233444443221111
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHHhcCc-eeEEEecCCCCCCccChhhHHhhhcCC-----------CCCcEEEEecC
Q 036345 249 AIIEALEGSASNLGELQSLLQRIQTSIAGK-KFLLVLDDMWTDDYSKWEPFNNCLMNG-----------LRGSKILVTTR 316 (954)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtr 316 (954)
...+.+..++-...++ ...+.+.++.+ ..+|+||++....++.+..+...+..+ -..+.||+||.
T Consensus 640 --~~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred --HHHhcCCCCCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 1122222221111110 11233333333 349999999887777888787776543 13455888886
Q ss_pred c
Q 036345 317 K 317 (954)
Q Consensus 317 ~ 317 (954)
.
T Consensus 717 ~ 717 (852)
T TIGR03346 717 L 717 (852)
T ss_pred c
Confidence 5
No 178
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.40 E-value=0.0027 Score=76.47 Aligned_cols=166 Identities=18% Similarity=0.206 Sum_probs=91.4
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
+.+.+|.++.+++|.++|............++.++|++|+||||+|+.++.. ....|- -+..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEE---EEEcCCCCCHHHhccch
Confidence 4568999999999998887432111223457999999999999999999873 322332 23334333332222111
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccC----hhhHHhhhcCC---------------CCCcEE
Q 036345 251 IEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSK----WEPFNNCLMNG---------------LRGSKI 311 (954)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~----~~~l~~~l~~~---------------~~gs~i 311 (954)
+...+. ....+.+.+.+. ....-+++||++..-.... .+.+...+... -.+..+
T Consensus 396 -~~~~g~-----~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RTYIGS-----MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hccCCC-----CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 001111 111233333332 2234478999995433221 23444443321 123334
Q ss_pred EEecCchhHHhh-hcCcceEeCCCCCHHHHHHHHHHHH
Q 036345 312 LVTTRKKTVAQM-MESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 312 iiTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
|.|+....+... .+-..++++.+++.++-.++..++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 445544333222 2335688999999999988888765
No 179
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.40 E-value=0.0044 Score=75.06 Aligned_cols=135 Identities=16% Similarity=0.202 Sum_probs=77.5
Q ss_pred CceeechhhhhHHHHHhhccCC---CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESS---QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
..++|.+..++.+...+..... .......++.++|+.|+|||+||+.++.. . +...+.++.++-.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcc----
Confidence 4588999999988887764321 11224567899999999999999999873 2 2334555554421111
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHHhcCce-eEEEecCCCCCCccChhhHHhhhcCC----C-------CCcEEEEecC
Q 036345 249 AIIEALEGSASNLGELQSLLQRIQTSIAGKK-FLLVLDDMWTDDYSKWEPFNNCLMNG----L-------RGSKILVTTR 316 (954)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~----~-------~gs~iiiTtr 316 (954)
.+ ..+-+..++-...+. ...+.+.++.++ -+|+||+++...++.+..+...+..+ + ..+.||+||.
T Consensus 525 ~~-~~lig~~~gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn 602 (731)
T TIGR02639 525 TV-SRLIGAPPGYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSN 602 (731)
T ss_pred cH-HHHhcCCCCCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCC
Confidence 11 112222111111111 112333343333 59999999877777777777766543 1 2355777774
Q ss_pred c
Q 036345 317 K 317 (954)
Q Consensus 317 ~ 317 (954)
.
T Consensus 603 ~ 603 (731)
T TIGR02639 603 A 603 (731)
T ss_pred c
Confidence 3
No 180
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0048 Score=65.72 Aligned_cols=93 Identities=12% Similarity=0.103 Sum_probs=67.9
Q ss_pred CceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCch-hHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCC
Q 036345 277 GKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKK-TVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHP 354 (954)
Q Consensus 277 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 354 (954)
+++=++|+|++...+......+...+.....++.+|++|.+. .+...+ .....+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~-- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I-- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--
Confidence 455689999998777788888888887766777777776654 444333 336689999999999999886531 0
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 355 SECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 355 ~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
. .+..++..++|.|+.+..+
T Consensus 182 ~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-------hHHHHHHHcCCCHHHHHHH
Confidence 1 1245789999999977654
No 181
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.37 E-value=0.00043 Score=74.95 Aligned_cols=32 Identities=28% Similarity=0.660 Sum_probs=15.8
Q ss_pred cccceecccccccCcCCCCCCCCCCCcceEEEecC
Q 036345 890 PQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKC 924 (954)
Q Consensus 890 p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 924 (954)
++|+.|.+.+|..+ .+|..+- .+|+.|.++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45666666666533 2333222 25555555443
No 182
>PRK10536 hypothetical protein; Provisional
Probab=97.32 E-value=0.0037 Score=63.41 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=75.1
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEE----eCC-----CC
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVC----VSD-----PF 241 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~----~s~-----~~ 241 (954)
...+.+|......+..++.. ..++.+.|++|.|||+||.++..+.-..+.|+..+-+. +++ +=
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCC
Confidence 34567788888888888853 23899999999999999988776422233444333221 111 00
Q ss_pred CHHH----HHHHHHHHhhcCCCCcccHHHHHH----H----HHHHhcCcee---EEEecCCCCCCccChhhHHhhhcCCC
Q 036345 242 DEFR----VARAIIEALEGSASNLGELQSLLQ----R----IQTSIAGKKF---LLVLDDMWTDDYSKWEPFNNCLMNGL 306 (954)
Q Consensus 242 ~~~~----~~~~i~~~l~~~~~~~~~~~~~~~----~----l~~~l~~kr~---LlVlDdvw~~~~~~~~~l~~~l~~~~ 306 (954)
+..+ .+.-+...+..-. +....+.... . =..+++|+.+ +||+|++.+-+. ..+...+...+
T Consensus 126 ~~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g 201 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLG 201 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcC
Confidence 1111 1222222221100 0011111110 0 0135667665 999999966544 44444455567
Q ss_pred CCcEEEEecCchh
Q 036345 307 RGSKILVTTRKKT 319 (954)
Q Consensus 307 ~gs~iiiTtr~~~ 319 (954)
.+|++|+|--..+
T Consensus 202 ~~sk~v~~GD~~Q 214 (262)
T PRK10536 202 ENVTVIVNGDITQ 214 (262)
T ss_pred CCCEEEEeCChhh
Confidence 8999999875543
No 183
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.32 E-value=0.0019 Score=78.98 Aligned_cols=138 Identities=15% Similarity=0.236 Sum_probs=77.5
Q ss_pred CceeechhhhhHHHHHhhccCC---CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESS---QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
..++|.+..++.+...+..... .++....++.++|+.|+|||++|+.+++. .-..-...+.++.+.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-----~ 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-----K 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-----h
Confidence 4689999999998888764321 11223458899999999999999998863 111112234444433111 1
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHHhcCc-eeEEEecCCCCCCccChhhHHhhhcCC----C-------CCcEEEEecC
Q 036345 249 AIIEALEGSASNLGELQSLLQRIQTSIAGK-KFLLVLDDMWTDDYSKWEPFNNCLMNG----L-------RGSKILVTTR 316 (954)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~~~~~~~~l~~~l~~~----~-------~gs~iiiTtr 316 (954)
.....+.+..++-...+. ...+.+.++.+ .-+|+|||+...++..+..+...+..+ + ..+.||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112223222222111111 11233333323 359999999776777777777766543 1 2334788886
Q ss_pred c
Q 036345 317 K 317 (954)
Q Consensus 317 ~ 317 (954)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 184
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.32 E-value=0.0017 Score=71.86 Aligned_cols=181 Identities=15% Similarity=0.160 Sum_probs=96.7
Q ss_pred cCCceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD 242 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 242 (954)
.-.++.|.+..+++|.+.+..+-.. .-...+-+.++|++|+|||++|+.+++. ....| +.+..+
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~s---- 213 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVGS---- 213 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH----
Confidence 3456899998888887765422100 0124567889999999999999999984 22222 222111
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCC------c----cCh-hhHHhhh---cC--CC
Q 036345 243 EFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDD------Y----SKW-EPFNNCL---MN--GL 306 (954)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~------~----~~~-~~l~~~l---~~--~~ 306 (954)
. +.....+. ....+...+.......+.+|+||++..-- . ... ..+...+ .. ..
T Consensus 214 --~----l~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 214 --E----FVQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred --H----HHHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 1 11111111 11112222223334678899999974210 0 011 1122222 21 23
Q ss_pred CCcEEEEecCchhHHhh--hc---CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 036345 307 RGSKILVTTRKKTVAQM--ME---STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 307 ~gs~iiiTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 375 (954)
.+..||.||...+.... .. -...+++...+.++..++|........ ....-++. ++++.+.|.-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dvd~~----~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEVDLE----DFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcccCHH----HHHHHcCCCC
Confidence 45678888876543221 22 245788999999998888886653221 12222333 3566666654
No 185
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.26 E-value=0.0021 Score=61.69 Aligned_cols=137 Identities=16% Similarity=0.154 Sum_probs=76.4
Q ss_pred echhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC----cccc--------------cccceEEEEEe
Q 036345 176 GRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND----NDVM--------------NSFEIRMWVCV 237 (954)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~----~~~~--------------~~f~~~~wv~~ 237 (954)
|-+...+.|...+... .-...+.++|+.|+||+|+|..+.+. .... ....-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4456667777777542 23456899999999999999776542 1110 11222334432
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHh-----cCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEE
Q 036345 238 SDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSI-----AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKIL 312 (954)
Q Consensus 238 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 312 (954)
.... ..-..++.. .+.+.+ .+++=++|+||+.....+.+..|...+.....++++|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2210 011222222 222222 2455689999998878888889998888877889998
Q ss_pred EecCchh-HHhhh-cCcceEeCCCCC
Q 036345 313 VTTRKKT-VAQMM-ESTDVFSIKELS 336 (954)
Q Consensus 313 iTtr~~~-v~~~~-~~~~~~~l~~L~ 336 (954)
++|++.. +.... .....+.+.++|
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8887754 33322 334567776654
No 186
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.01 Score=63.46 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=68.1
Q ss_pred cCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCch-hHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCC
Q 036345 276 AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKK-TVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRH 353 (954)
Q Consensus 276 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 353 (954)
.+++=++|+|++...+......+...+.....++.+|++|.+. .+...+ .....+.+.+++.++..+.+.....
T Consensus 105 ~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~---- 180 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS---- 180 (325)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc----
Confidence 3566688899998777778888888887777777888777654 343332 3356899999999999988887531
Q ss_pred CCCchhHHHHHHHHHHhcCCChHHHH
Q 036345 354 PSECEQLEEIGRKIVSRCKGLPLAAK 379 (954)
Q Consensus 354 ~~~~~~~~~~~~~i~~~c~glPlai~ 379 (954)
.. ...+...+..++|.|+.+.
T Consensus 181 -~~----~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 181 -AE----ISEILTALRINYGRPLLAL 201 (325)
T ss_pred -cC----hHHHHHHHHHcCCCHHHHH
Confidence 11 1124567889999997443
No 187
>PRK12377 putative replication protein; Provisional
Probab=97.25 E-value=0.00045 Score=70.83 Aligned_cols=101 Identities=21% Similarity=0.151 Sum_probs=56.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCce
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKK 279 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 279 (954)
..+.++|..|+|||+||..+++. .......++++++. +++..+-..... ...... +.+.+ .+-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~----~l~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK----FLQEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH----HHHHh-cCC
Confidence 47899999999999999999984 33334456676654 344444333211 111111 22222 355
Q ss_pred eEEEecCCCCCCccChhh--HHhhhcCC-CCCcEEEEecCc
Q 036345 280 FLLVLDDMWTDDYSKWEP--FNNCLMNG-LRGSKILVTTRK 317 (954)
Q Consensus 280 ~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iiiTtr~ 317 (954)
=||||||+-......|.. +...+... .+.--+||||..
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 699999995443344543 33333321 222346777754
No 188
>CHL00176 ftsH cell division protein; Validated
Probab=97.25 E-value=0.0051 Score=72.13 Aligned_cols=178 Identities=16% Similarity=0.192 Sum_probs=96.4
Q ss_pred CCceeechhhhhHHHHH---hhccCC---CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 171 VSEVRGRDEEKNSLKSK---LLCESS---QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
-.+++|.++.++++.+. +..+.. -.....+-+.++|++|+|||+||+.++... . +-|+.++. .
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~----s 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISG----S 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccH----H
Confidence 45688887766665544 332211 001234568999999999999999998842 1 12333322 1
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCC----------ccChhh-HHhhh---cC--CCCC
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDD----------YSKWEP-FNNCL---MN--GLRG 308 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----------~~~~~~-l~~~l---~~--~~~g 308 (954)
++. ....+ .....+...+.......+.+|+|||+..-. ...+.. +...+ .. ...+
T Consensus 251 ~f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111 11100 011223333444456778999999994310 011111 22222 11 2345
Q ss_pred cEEEEecCchhHHh-hh-c---CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCC
Q 036345 309 SKILVTTRKKTVAQ-MM-E---STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKG 373 (954)
Q Consensus 309 s~iiiTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 373 (954)
..||.||....... .+ . -...+.++..+.++-.++++.++..... .. ......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SP----DVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-ch----hHHHHHHHhcCCC
Confidence 66777776644322 11 1 1457889999999999999887643111 11 2234567888887
No 189
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.005 Score=66.81 Aligned_cols=148 Identities=11% Similarity=0.109 Sum_probs=89.5
Q ss_pred ceee-chhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccccc--------------------ccce
Q 036345 173 EVRG-RDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMN--------------------SFEI 231 (954)
Q Consensus 173 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~ 231 (954)
.++| -+..++.+...+... .-.....++|+.|+||||+|+.+.+..--.. |.|.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 3566 556677777777532 3456779999999999999987754210000 1111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHH----hcCceeEEEecCCCCCCccChhhHHhhhcCCCC
Q 036345 232 RMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTS----IAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLR 307 (954)
Q Consensus 232 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 307 (954)
.++.... ....++++.+.+... ..+++=++|+|++...+......+...+.....
T Consensus 81 -~~i~~~~--------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~ 139 (329)
T PRK08058 81 -HLVAPDG--------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSG 139 (329)
T ss_pred -EEecccc--------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCC
Confidence 1111100 011122222222111 234556799999977666677778888877667
Q ss_pred CcEEEEecCch-hHHhhh-cCcceEeCCCCCHHHHHHHHHH
Q 036345 308 GSKILVTTRKK-TVAQMM-ESTDVFSIKELSKQECWSLFKR 346 (954)
Q Consensus 308 gs~iiiTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~ 346 (954)
++.+|++|.+. .+...+ .....+++.+++.++..+.+..
T Consensus 140 ~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 140 GTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 77777777653 333322 3356899999999999888865
No 190
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.21 E-value=0.0089 Score=62.67 Aligned_cols=140 Identities=13% Similarity=0.115 Sum_probs=71.3
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH--------HH----hhcCCCCcccHHHHH
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAII--------EA----LEGSASNLGELQSLL 268 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~--------~~----l~~~~~~~~~~~~~~ 268 (954)
-|.+.|++|+|||++|+.+.. ... ...+.+++....+..+++.... .+ ........ +..-..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIV-RQNWVD 96 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhccc-ceeecC
Confidence 467999999999999999986 222 1244566665555555443211 00 00000000 000000
Q ss_pred HHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCC----------------CCCcEEEEecCchhHHh-------hhc
Q 036345 269 QRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNG----------------LRGSKILVTTRKKTVAQ-------MME 325 (954)
Q Consensus 269 ~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~----------------~~gs~iiiTtr~~~v~~-------~~~ 325 (954)
..+.... .+...+++|++...+.+.+..|...+..+ .++.+||+|+....... ...
T Consensus 97 g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 97 NRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred chHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 1111111 23468999999766666666666655321 13567888887542110 011
Q ss_pred CcceEeCCCCCHHHHHHHHHHH
Q 036345 326 STDVFSIKELSKQECWSLFKRF 347 (954)
Q Consensus 326 ~~~~~~l~~L~~~~~~~lf~~~ 347 (954)
-...+.+...+.++-.+++.++
T Consensus 176 R~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 176 RLITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred hcEEEECCCCCHHHHHHHHHHh
Confidence 1234555556666666666554
No 191
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.20 E-value=0.00023 Score=69.42 Aligned_cols=101 Identities=25% Similarity=0.371 Sum_probs=50.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGK 278 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 278 (954)
..-+.++|..|+|||.||..+.+. ....=..+.|++++ + ++..+...... ...... +. .+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~~------~----L~~~l~~~~~~-~~~~~~---~~-~l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITAS------D----LLDELKQSRSD-GSYEEL---LK-RLK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEHH------H----HHHHHHCCHCC-TTHCHH---HH-HHH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeecC------c----eeccccccccc-cchhhh---cC-ccc-c
Confidence 346999999999999999988874 22222345666533 3 33444332111 122222 22 222 2
Q ss_pred eeEEEecCCCCCCccChhh--HHhhhcCC-CCCcEEEEecCch
Q 036345 279 KFLLVLDDMWTDDYSKWEP--FNNCLMNG-LRGSKILVTTRKK 318 (954)
Q Consensus 279 r~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iiiTtr~~ 318 (954)
-=||||||+-......|.. +...+... .++ .+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 3478899996554444433 22222221 233 578888653
No 192
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.17 E-value=0.0046 Score=60.03 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=35.8
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhc
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
-.++||-|+.++++.-.-. +++..-+.|.||+|+||||-+..+++
T Consensus 26 l~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 3579999999988866554 23556788999999999998877766
No 193
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.001 Score=77.59 Aligned_cols=134 Identities=17% Similarity=0.274 Sum_probs=85.1
Q ss_pred CceeechhhhhHHHHHhhccCCC---CCCceEEEEEEecCCchHHHHHHHHhcCccccccc---ceEEEEEeCCCCCHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQ---QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSF---EIRMWVCVSDPFDEFR 245 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~~~~~~ 245 (954)
..++|.+..++.+.+.+.....+ ++...++...+|+.|||||-||+.++.. -| +..+-++.| +
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMS------E 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMS------E 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechH------H
Confidence 46899999999998887654321 2456778899999999999999888662 23 222333333 3
Q ss_pred HH-HHHHHHhhcCCCCcccHHHHHHHHHHHhcCcee-EEEecCCCCCCccChhhHHhhhcCC----CC-------CcEEE
Q 036345 246 VA-RAIIEALEGSASNLGELQSLLQRIQTSIAGKKF-LLVLDDMWTDDYSKWEPFNNCLMNG----LR-------GSKIL 312 (954)
Q Consensus 246 ~~-~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~----~~-------gs~ii 312 (954)
.. +.-+..|-+.+++-...++ -..|-+..+.++| +|.||++....++-.+.+...+..+ +. ++-||
T Consensus 560 y~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiII 638 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIII 638 (786)
T ss_pred HHHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEE
Confidence 22 2233444444443322222 2345566677887 8999999877777777777776654 22 45566
Q ss_pred EecCc
Q 036345 313 VTTRK 317 (954)
Q Consensus 313 iTtr~ 317 (954)
+||.-
T Consensus 639 mTSN~ 643 (786)
T COG0542 639 MTSNA 643 (786)
T ss_pred Eeccc
Confidence 67653
No 194
>PRK08181 transposase; Validated
Probab=97.15 E-value=0.001 Score=69.20 Aligned_cols=100 Identities=21% Similarity=0.149 Sum_probs=54.9
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCcee
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKF 280 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 280 (954)
-+.++|++|+|||.||..+.+. .......++|+++ .+++..+..... ....+.. +.. + .+-=
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~---l~~-l-~~~d 169 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESA---IAK-L-DKFD 169 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHH---HHH-H-hcCC
Confidence 4899999999999999999873 2223334566653 344444433211 1122222 222 2 2334
Q ss_pred EEEecCCCCCCccChh--hHHhhhcCCCCCcEEEEecCch
Q 036345 281 LLVLDDMWTDDYSKWE--PFNNCLMNGLRGSKILVTTRKK 318 (954)
Q Consensus 281 LlVlDdvw~~~~~~~~--~l~~~l~~~~~gs~iiiTtr~~ 318 (954)
||||||+.......|. .+...+...-.+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9999999544333332 2444443211123588888754
No 195
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.011 Score=61.65 Aligned_cols=190 Identities=14% Similarity=0.143 Sum_probs=108.8
Q ss_pred CCceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
-..+-|-++.+++|.+.+.-+--. .-+.++=|.++|++|.|||-||++|++. ....| +.|..
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg---- 218 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG---- 218 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc----
Confidence 346778898888888766443211 1235677889999999999999999994 33333 33332
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhc-CceeEEEecCCCCC-----------CccChhhHHhh---hcCC--C
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQTSIA-GKKFLLVLDDMWTD-----------DYSKWEPFNNC---LMNG--L 306 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~-----------~~~~~~~l~~~---l~~~--~ 306 (954)
.++.++.-++. ..+...+.+.-+ ..+.+|++|.+... +.+....+... +..+ .
T Consensus 219 ----SElVqKYiGEG------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 219 ----SELVQKYIGEG------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ----HHHHHHHhccc------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 23444443321 345555665554 45799999988321 11111222232 2221 3
Q ss_pred CCcEEEEecCchhHHhh--hcC---cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHH----
Q 036345 307 RGSKILVTTRKKTVAQM--MES---TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLA---- 377 (954)
Q Consensus 307 ~gs~iiiTtr~~~v~~~--~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla---- 377 (954)
...|||.+|...++..- +.+ +..+++..-+.+.-.++|+-++-.-. ....-+++. +++.|.|.-=|
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dvd~e~----la~~~~g~sGAdlka 363 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDVDLEL----LARLTEGFSGADLKA 363 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCcCHHH----HHHhcCCCchHHHHH
Confidence 46789998877655432 222 56788886566666677776553221 122234444 67777776543
Q ss_pred HHHHHhhhc
Q 036345 378 AKTIGSLLR 386 (954)
Q Consensus 378 i~~~~~~l~ 386 (954)
+.+=|++++
T Consensus 364 ictEAGm~A 372 (406)
T COG1222 364 ICTEAGMFA 372 (406)
T ss_pred HHHHHhHHH
Confidence 333355543
No 196
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.14 E-value=0.0055 Score=60.14 Aligned_cols=122 Identities=20% Similarity=0.307 Sum_probs=71.3
Q ss_pred ccCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 169 INVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
++-..++|.+...+.+++-...-.. +....-|.+||.-|+||++|++++.+. +....-. -|.|.+.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~-------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE-------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH--------
Confidence 4456789999988888764322211 223446889999999999999999883 3333322 2333321
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCC-CCCccChhhHHhhhcCC---CCCcEEEEecCc
Q 036345 249 AIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMW-TDDYSKWEPFNNCLMNG---LRGSKILVTTRK 317 (954)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw-~~~~~~~~~l~~~l~~~---~~gs~iiiTtr~ 317 (954)
+..++..+...|+. ..+||+|+.||.. +.+...+..+++.+..+ .+...++..|.+
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 11112222222222 3789999999994 23345677788777653 233344444443
No 197
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.13 E-value=0.018 Score=65.60 Aligned_cols=90 Identities=19% Similarity=0.179 Sum_probs=60.1
Q ss_pred CCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHh
Q 036345 196 PNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSI 275 (954)
Q Consensus 196 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 275 (954)
.+.-+++.+.|++|+||||||+.++++.- | .++=|++|..-+...+-..|...+....... -
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------a 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------A 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc-------------c
Confidence 45678999999999999999999998522 2 3667788887777777666666554331110 0
Q ss_pred cCceeEEEecCCCCCCccChhhHHhhhc
Q 036345 276 AGKKFLLVLDDMWTDDYSKWEPFNNCLM 303 (954)
Q Consensus 276 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~ 303 (954)
.+++.-||+|.+.-......+.+...+.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2567788999884433334555555444
No 198
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.13 E-value=0.0018 Score=69.01 Aligned_cols=122 Identities=15% Similarity=0.170 Sum_probs=69.7
Q ss_pred echhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 036345 176 GRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALE 255 (954)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 255 (954)
+|....+...+++..-.. ....+-+.++|..|+|||.||..+++. ....-..+.+++++ .++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHh
Confidence 444445555555543221 123457899999999999999999985 22222345666654 44455444432
Q ss_pred cCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhh--HHhhh-cCC-CCCcEEEEecCc
Q 036345 256 GSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEP--FNNCL-MNG-LRGSKILVTTRK 317 (954)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~--l~~~l-~~~-~~gs~iiiTtr~ 317 (954)
.. +.. ..+... .+-=||||||+-.+....|.. +...+ ... ..+-.+|+||..
T Consensus 205 ~~-----~~~---~~l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG-----SVK---EKIDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC-----cHH---HHHHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 21 122 222222 344589999997666667754 44333 322 245568888864
No 199
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.12 E-value=0.0051 Score=71.08 Aligned_cols=181 Identities=15% Similarity=0.145 Sum_probs=94.0
Q ss_pred cCCceeechhhhhHHHHHhh---ccC---CCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 170 NVSEVRGRDEEKNSLKSKLL---CES---SQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~---~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
.-.+++|.+..++++.+.+. .+. .......+-+.++|++|+|||++|+.+++.. ... ++.++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~---- 121 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG---- 121 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----
Confidence 34578898877666655443 110 0001233458899999999999999998842 112 233321
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCC----------ccChhh----HHhhhc--CCCC
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDD----------YSKWEP----FNNCLM--NGLR 307 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----------~~~~~~----l~~~l~--~~~~ 307 (954)
.++ .....+. ....+...+.......+.+|+|||+..-. ...+.. +...+. ....
T Consensus 122 ~~~----~~~~~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 SDF----VEMFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHH----HHHHhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 111 1111110 11223333333444567899999994310 011111 111121 1233
Q ss_pred CcEEEEecCchhHHh-hh----cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 036345 308 GSKILVTTRKKTVAQ-MM----ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 308 gs~iiiTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 375 (954)
+..||.||....... .+ .-...++++..+.++-.++|..+...... ....+ ...+++.+.|.-
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~s 260 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGFS 260 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCCC
Confidence 455666776543211 11 12457889999999999999876633221 11112 235788887733
No 200
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.014 Score=62.94 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=66.7
Q ss_pred CceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCc-hhHHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCC
Q 036345 277 GKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRK-KTVAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHP 354 (954)
Q Consensus 277 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 354 (954)
+++=++|+|++...+...+..+...+....+++.+|++|.+ ..+... ......+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 45568899999888888889998888877777777766655 444433 2335789999999999999887641 1
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHH
Q 036345 355 SECEQLEEIGRKIVSRCKGLPLAAKTIG 382 (954)
Q Consensus 355 ~~~~~~~~~~~~i~~~c~glPlai~~~~ 382 (954)
. . ...++..++|.|..+..+.
T Consensus 206 ~---~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 A---D----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred C---h----HHHHHHHcCCCHHHHHHHH
Confidence 1 1 1235778899998665443
No 201
>PRK06921 hypothetical protein; Provisional
Probab=97.12 E-value=0.0019 Score=67.52 Aligned_cols=99 Identities=21% Similarity=0.308 Sum_probs=55.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccc-cceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNS-FEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAG 277 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 277 (954)
...+.++|..|+|||+||..+++. .... -..+++++.. +++..+...+ +.....+.. + .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~-~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNR-M-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHHH-h-c
Confidence 456899999999999999999884 3333 3456677642 2333332221 111122222 2 2
Q ss_pred ceeEEEecCCCC-----CCccChhh--HHhhhcCC-CCCcEEEEecCc
Q 036345 278 KKFLLVLDDMWT-----DDYSKWEP--FNNCLMNG-LRGSKILVTTRK 317 (954)
Q Consensus 278 kr~LlVlDdvw~-----~~~~~~~~--l~~~l~~~-~~gs~iiiTtr~ 317 (954)
+-=||||||+.. +....|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 345999999932 22334543 44433321 234457888864
No 202
>PRK08118 topology modulation protein; Reviewed
Probab=97.10 E-value=0.00019 Score=69.36 Aligned_cols=34 Identities=32% Similarity=0.568 Sum_probs=26.6
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccc-cccceEEE
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDVM-NSFEIRMW 234 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 234 (954)
.|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999854333 45666665
No 203
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.08 E-value=2.8e-05 Score=68.70 Aligned_cols=83 Identities=19% Similarity=0.338 Sum_probs=48.4
Q ss_pred cCCCceeEEEecCCCccccccccccchhhhc-cCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCC
Q 036345 583 DQLTFLRTLKITGESAGVEKSIREIPKEIEK-LKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKL 661 (954)
Q Consensus 583 ~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~-L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l 661 (954)
....+|...+|++| .+..+|..+.. .+.+..|+|++|.|..+|+.+..++.|+.|+++.|. +...|..+..|
T Consensus 50 ~~~~el~~i~ls~N------~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L 122 (177)
T KOG4579|consen 50 SKGYELTKISLSDN------GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPL 122 (177)
T ss_pred hCCceEEEEecccc------hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHH
Confidence 44455555666666 55555555443 235666666666666666666666666666666655 55556555556
Q ss_pred CCCCEEeccCc
Q 036345 662 VNLRHLMISHN 672 (954)
Q Consensus 662 ~~L~~L~l~~~ 672 (954)
.+|-.|+..++
T Consensus 123 ~~l~~Lds~~n 133 (177)
T KOG4579|consen 123 IKLDMLDSPEN 133 (177)
T ss_pred HhHHHhcCCCC
Confidence 66666655544
No 204
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.05 E-value=5.2e-05 Score=84.77 Aligned_cols=126 Identities=23% Similarity=0.239 Sum_probs=98.6
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-hh
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-IE 612 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~ 612 (954)
|..+...+++.|.+..+-.++.-++.|+.|+++.|. +.. . +.+..+++|+.|||++| .+..+|.- ..
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk----~~~-v-~~Lr~l~~LkhLDlsyN------~L~~vp~l~~~ 230 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK----FTK-V-DNLRRLPKLKHLDLSYN------CLRHVPQLSMV 230 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh----hhh-h-HHHHhcccccccccccc------hhccccccchh
Confidence 667778888888887777788889999999999986 332 1 25788999999999999 77777652 22
Q ss_pred ccCcCceeeccCcccccccccccCCCCccEEeccccCCCcccc--ccccCCCCCCEEeccCccc
Q 036345 613 KLKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLP--QGIGKLVNLRHLMISHNVY 674 (954)
Q Consensus 613 ~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~ 674 (954)
.++ |+.|+|++|.++.|- .|.+|.+|+.||+++|- +...- .-++.|..|+.|++.||+.
T Consensus 231 gc~-L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 231 GCK-LQLLNLRNNALTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhh-heeeeecccHHHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 343 999999999998884 68899999999999975 43221 1267888999999999864
No 205
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.04 E-value=1.3e-05 Score=89.40 Aligned_cols=102 Identities=30% Similarity=0.284 Sum_probs=76.2
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhh-hcCCCceeEEEecCCCccccccccccchhhh
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGL-FDQLTFLRTLKITGESAGVEKSIREIPKEIE 612 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~ 612 (954)
.+.+++|++++|.+.. ...+..|++|++|++++|. +.. +|.. ..+++ |.+|.+++| .++.+ ..|.
T Consensus 186 l~ale~LnLshNk~~~-v~~Lr~l~~LkhLDlsyN~----L~~-vp~l~~~gc~-L~~L~lrnN------~l~tL-~gie 251 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK-VDNLRRLPKLKHLDLSYNC----LRH-VPQLSMVGCK-LQLLNLRNN------ALTTL-RGIE 251 (1096)
T ss_pred HHHhhhhccchhhhhh-hHHHHhcccccccccccch----hcc-ccccchhhhh-heeeeeccc------HHHhh-hhHH
Confidence 4567889999998886 3478889999999999886 333 3332 23444 999999998 67776 3488
Q ss_pred ccCcCceeeccCccccccc--ccccCCCCccEEeccccC
Q 036345 613 KLKHLRFLKLSQVDLEELP--ETCCELVNLQTLDIEACG 649 (954)
Q Consensus 613 ~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~ 649 (954)
+|++|+.||+++|-|.... ..++.|..|..|.|.||.
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8999999999998776332 235677788889998887
No 206
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.04 E-value=0.00091 Score=67.47 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=28.9
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccceEEEEEe
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCV 237 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 237 (954)
.++|+|..|+|||||+..+..+ ....|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 5789999999999999988874 6678877777654
No 207
>PRK06526 transposase; Provisional
Probab=97.03 E-value=0.0013 Score=68.08 Aligned_cols=100 Identities=20% Similarity=0.193 Sum_probs=52.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCce
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKK 279 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 279 (954)
.-+.++|++|+|||+||..+.... ....+ .+.|+ +..+++..+..... . .. ....+.+. .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a-~~~g~-~v~f~------t~~~l~~~l~~~~~----~-~~---~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA-CQAGH-RVLFA------TAAQWVARLAAAHH----A-GR---LQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH-HHCCC-chhhh------hHHHHHHHHHHHHh----c-Cc---HHHHHHHh--ccC
Confidence 358999999999999999887642 11222 23333 23344444432211 1 11 11223322 234
Q ss_pred eEEEecCCCCCCccChh--hHHhhhcC-CCCCcEEEEecCch
Q 036345 280 FLLVLDDMWTDDYSKWE--PFNNCLMN-GLRGSKILVTTRKK 318 (954)
Q Consensus 280 ~LlVlDdvw~~~~~~~~--~l~~~l~~-~~~gs~iiiTtr~~ 318 (954)
-+||+||+.......|. .+...+.. -..++ +|+||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 58999999543322232 23343322 12344 88888764
No 208
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.01 E-value=0.0018 Score=79.01 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=76.6
Q ss_pred CceeechhhhhHHHHHhhccCC---CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESS---QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
..++|.+..++.+.+.+..... .+.....++.++|+.|+|||.||+.+... .-+.....+-++.+.-.+ .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~-----~ 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQE-----A 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhh-----h
Confidence 5689999999999888754311 11335568999999999999999887663 111111222222222110 0
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHHhc-CceeEEEecCCCCCCccChhhHHhhhcCCC-----------CCcEEEEecC
Q 036345 249 AIIEALEGSASNLGELQSLLQRIQTSIA-GKKFLLVLDDMWTDDYSKWEPFNNCLMNGL-----------RGSKILVTTR 316 (954)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr 316 (954)
.-...+.+..++-...++ ...+.+.++ ...-+|+||++...++..++.+...+..+. ..+.||+||.
T Consensus 639 ~~~~~l~g~~~gyvg~~~-~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSN 717 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGE-GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSN 717 (852)
T ss_pred hhhccccCCCCCcccccc-cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCC
Confidence 111122222221111100 011223333 344699999997777766777766665442 4566777775
Q ss_pred c
Q 036345 317 K 317 (954)
Q Consensus 317 ~ 317 (954)
.
T Consensus 718 l 718 (852)
T TIGR03345 718 A 718 (852)
T ss_pred C
Confidence 4
No 209
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.00 E-value=9.7e-05 Score=65.40 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=73.3
Q ss_pred ccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCccccccc
Q 036345 552 VSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELP 631 (954)
Q Consensus 552 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp 631 (954)
..+....+|...++++|. +..+.+.+...++.+..|+|++| .+..+|..+..++.||.|+++.|.+...|
T Consensus 47 y~l~~~~el~~i~ls~N~----fk~fp~kft~kf~t~t~lNl~~n------eisdvPeE~Aam~aLr~lNl~~N~l~~~p 116 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNG----FKKFPKKFTIKFPTATTLNLANN------EISDVPEELAAMPALRSLNLRFNPLNAEP 116 (177)
T ss_pred HHHhCCceEEEEecccch----hhhCCHHHhhccchhhhhhcchh------hhhhchHHHhhhHHhhhcccccCccccch
Confidence 344555667777777775 33434444466778888999988 78889988999999999999999999999
Q ss_pred ccccCCCCccEEeccccCCCcccccc
Q 036345 632 ETCCELVNLQTLDIEACGSLKRLPQG 657 (954)
Q Consensus 632 ~~i~~L~~L~~L~L~~~~~l~~lp~~ 657 (954)
.-|-.|.+|-.||..++. ...+|-.
T Consensus 117 ~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 117 RVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 888889999999988876 6666655
No 210
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.00 E-value=0.023 Score=61.74 Aligned_cols=210 Identities=12% Similarity=0.114 Sum_probs=124.2
Q ss_pred chhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHH-HHHhcCcccccccceEEEEEeCC---CCCHHHHHHHHHH
Q 036345 177 RDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLA-QFAYNDNDVMNSFEIRMWVCVSD---PFDEFRVARAIIE 252 (954)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~ 252 (954)
|.+..++|..||.... -..|.|.||-|+||+.|+ .++..+.+. +..+++.+ ..+-..++..++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 5677899999998543 469999999999999999 777775332 44454432 2234455555555
Q ss_pred Hhhc-----------------------CCCCc-ccHHH--------HHHHHHH-------------------Hhc---Cc
Q 036345 253 ALEG-----------------------SASNL-GELQS--------LLQRIQT-------------------SIA---GK 278 (954)
Q Consensus 253 ~l~~-----------------------~~~~~-~~~~~--------~~~~l~~-------------------~l~---~k 278 (954)
++|- +..+. .+.+. ....|++ +++ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 5531 11111 11111 1111221 111 23
Q ss_pred eeEEEecCCCCCCc---cChhhHH---hhhcCCCCCcEEEEecCchhHHhh----hc--CcceEeCCCCCHHHHHHHHHH
Q 036345 279 KFLLVLDDMWTDDY---SKWEPFN---NCLMNGLRGSKILVTTRKKTVAQM----ME--STDVFSIKELSKQECWSLFKR 346 (954)
Q Consensus 279 r~LlVlDdvw~~~~---~~~~~l~---~~l~~~~~gs~iiiTtr~~~v~~~----~~--~~~~~~l~~L~~~~~~~lf~~ 346 (954)
|-+||+|+.-.... .-|+.+. ..+- .++-.+||++|-+...... +. ....+.|...+.+.|..+..+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 66999999843211 1122221 1111 2355689988877655443 32 245788999999999999998
Q ss_pred HHcCCCCC------------CCc----hhHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHH-HHHHHh
Q 036345 347 FAFFGRHP------------SEC----EQLEEIGRKIVSRCKGLPLAAKTIGSLLRFKKTREE-WQRILD 399 (954)
Q Consensus 347 ~~~~~~~~------------~~~----~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~-w~~~l~ 399 (954)
+....... ... .....-....++..||--.-+..+++.++.+.++++ -..+.+
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 77443110 000 123334456889999999999999999998876543 333433
No 211
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.99 E-value=0.029 Score=61.34 Aligned_cols=167 Identities=13% Similarity=0.180 Sum_probs=95.5
Q ss_pred hhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc--cccc---eEEEEEeCCCCCHHHHHHHHHH
Q 036345 178 DEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM--NSFE---IRMWVCVSDPFDEFRVARAIIE 252 (954)
Q Consensus 178 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~---~~~wv~~s~~~~~~~~~~~i~~ 252 (954)
+.-.+.|.+.+.... .....+|+|.|.=|+||||+.+.+.+.-+-. ..+. .-+|-....+.-...++..|..
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~ 78 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFD 78 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHH
Confidence 344566777776543 2478899999999999999999887742222 1111 2234444333334555666666
Q ss_pred HhhcCCCC----------------------------c--------------------------------------ccHHH
Q 036345 253 ALEGSASN----------------------------L--------------------------------------GELQS 266 (954)
Q Consensus 253 ~l~~~~~~----------------------------~--------------------------------------~~~~~ 266 (954)
++...... . .+.++
T Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (325)
T PF07693_consen 79 QLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVEE 158 (325)
T ss_pred HHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHHH
Confidence 55321000 0 00111
Q ss_pred HHHHHHHHh--cCceeEEEecCCCCCCccChhhHHhhhcC--CCCCcEEEEecCchhHHhhhcC----------------
Q 036345 267 LLQRIQTSI--AGKKFLLVLDDMWTDDYSKWEPFNNCLMN--GLRGSKILVTTRKKTVAQMMES---------------- 326 (954)
Q Consensus 267 ~~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~--~~~gs~iiiTtr~~~v~~~~~~---------------- 326 (954)
....+.+.+ .++|.+||+||+...+++....+...+.. ..++..+|+..-.+.+......
T Consensus 159 ~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLe 238 (325)
T PF07693_consen 159 LISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLE 238 (325)
T ss_pred HHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHH
Confidence 233344444 35799999999977666555554444432 2367778877766655543321
Q ss_pred ---cceEeCCCCCHHHHHHHHHHH
Q 036345 327 ---TDVFSIKELSKQECWSLFKRF 347 (954)
Q Consensus 327 ---~~~~~l~~L~~~~~~~lf~~~ 347 (954)
..++.+++.+..+-..+|...
T Consensus 239 Kiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 239 KIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred hhcCeEEEeCCCCHHHHHHHHHHH
Confidence 125677777776666565554
No 212
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.97 E-value=0.003 Score=69.98 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=83.3
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH-
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI- 250 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i- 250 (954)
..++||++.++.+...+.... -|.|.|++|+|||++|+.+.........|.. +.+.-. ...+++..+
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~---~~~~ft-tp~DLfG~l~ 87 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEY---LMTRFS-TPEEVFGPLS 87 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCccee---eeeeec-CcHHhcCcHH
Confidence 358999999999988887544 4889999999999999999873211123321 111100 122222211
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHHhcC---ceeEEEecCCCCCCccChhhHHhhhcCC-----C----CCcEEEEecCch
Q 036345 251 IEALEGSASNLGELQSLLQRIQTSIAG---KKFLLVLDDMWTDDYSKWEPFNNCLMNG-----L----RGSKILVTTRKK 318 (954)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~l~~~l~~---kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----~----~gs~iiiTtr~~ 318 (954)
+...... ..+.+...| .-=++++|+++...+.....+...+... + -..++++++.++
T Consensus 88 i~~~~~~-----------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 88 IQALKDE-----------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred Hhhhhhc-----------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 1111100 011111111 1128999999987777777776665321 1 123455555442
Q ss_pred hHHh-------hhcC-cceEeCCCCCHH-HHHHHHHHH
Q 036345 319 TVAQ-------MMES-TDVFSIKELSKQ-ECWSLFKRF 347 (954)
Q Consensus 319 ~v~~-------~~~~-~~~~~l~~L~~~-~~~~lf~~~ 347 (954)
... .+.- .-.+.+++++++ +-.+++...
T Consensus 157 -LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 -LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred -CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 221 1111 336888999854 447777653
No 213
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.97 E-value=0.008 Score=61.99 Aligned_cols=174 Identities=17% Similarity=0.201 Sum_probs=100.3
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH-HHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF-RVARA 249 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~ 249 (954)
...++|-.++..++..++....- .+...-+.|+|+.|.|||+|...+..+ .+..-+..+-|........+ -.++.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHH
Confidence 35688998888888888765432 223446789999999999999887775 22222334555565554443 34666
Q ss_pred HHHHhhcC----CCCcccHHHHHHHHHHHhc------CceeEEEecCCCCCCccChhh-HHhhh---cC-CCCCcEEEEe
Q 036345 250 IIEALEGS----ASNLGELQSLLQRIQTSIA------GKKFLLVLDDMWTDDYSKWEP-FNNCL---MN-GLRGSKILVT 314 (954)
Q Consensus 250 i~~~l~~~----~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdvw~~~~~~~~~-l~~~l---~~-~~~gs~iiiT 314 (954)
|.+|+..+ .....+..+....+-..|+ +-++++|+|++.-.-...=.. +...+ .. ..|-+.|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 77766532 1122233333444444443 235888888873221111111 22222 11 3456677789
Q ss_pred cCchhH-------HhhhcCcceEeCCCCCHHHHHHHHHHHH
Q 036345 315 TRKKTV-------AQMMESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 315 tr~~~v-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
||-... -..+.-..++-++.++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 987542 2222223356667888888888888765
No 214
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.028 Score=60.79 Aligned_cols=96 Identities=11% Similarity=0.030 Sum_probs=68.5
Q ss_pred cCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCch-hHHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCC
Q 036345 276 AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKK-TVAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRH 353 (954)
Q Consensus 276 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 353 (954)
.+++=++|+|++...+......+...+.....++.+|++|.+. .+... ......+.+.+++.+++.+.+.... +
T Consensus 106 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~--- 181 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T--- 181 (334)
T ss_pred cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C---
Confidence 3666799999998777778888888887766777777777654 34433 2335688999999999988886532 1
Q ss_pred CCCchhHHHHHHHHHHhcCCChHHHHH
Q 036345 354 PSECEQLEEIGRKIVSRCKGLPLAAKT 380 (954)
Q Consensus 354 ~~~~~~~~~~~~~i~~~c~glPlai~~ 380 (954)
.. .+.+..++..++|.|..+..
T Consensus 182 -~~----~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 182 -MS----QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred -CC----HHHHHHHHHHcCCCHHHHHH
Confidence 11 22356789999999975543
No 215
>PRK09183 transposase/IS protein; Provisional
Probab=96.96 E-value=0.0029 Score=65.92 Aligned_cols=101 Identities=21% Similarity=0.222 Sum_probs=52.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCce
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKK 279 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 279 (954)
..+.|+|++|+|||+||..+..... ... ..+.+++ ..++...+...... .. ....+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G-~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAG-IKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcC-CeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 3677999999999999999876311 112 2333443 22333333222111 11 112222222 344
Q ss_pred eEEEecCCCCCCccChh--hHHhhhcCC-CCCcEEEEecCch
Q 036345 280 FLLVLDDMWTDDYSKWE--PFNNCLMNG-LRGSKILVTTRKK 318 (954)
Q Consensus 280 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iiiTtr~~ 318 (954)
-++|+||+.......+. .+...+... ..++ +||||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 59999999653333333 244433221 2344 78888653
No 216
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.0025 Score=71.48 Aligned_cols=190 Identities=15% Similarity=0.204 Sum_probs=111.6
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
-+++||-+.-...|...+.... -..-....|+-|+||||+|+.++.----. -| ....++..-..-+.|
T Consensus 15 F~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~------~~-~~~ePC~~C~~Ck~I 82 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCE------NG-PTAEPCGKCISCKEI 82 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCC------CC-CCCCcchhhhhhHhh
Confidence 3567999998999988887543 34456788999999999998876521000 00 111111111111222
Q ss_pred HHH--------hhcCCCCcccHHHHHHHHHHH-hcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCch-hH
Q 036345 251 IEA--------LEGSASNLGELQSLLQRIQTS-IAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKK-TV 320 (954)
Q Consensus 251 ~~~--------l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v 320 (954)
-.. =.....+.++..++.+...-. .+++-=+.|+|+|+--....|..+...+.......+.|+.|.+. .+
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 111 001111222222222222211 13444589999998777788888888776655666666666654 34
Q ss_pred Hhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChH
Q 036345 321 AQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPL 376 (954)
Q Consensus 321 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 376 (954)
... ....+.|.++.++.++-...+...+-...-..+ .+....|++..+|..-
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 332 344679999999999998888887644333222 3445557777777544
No 217
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.91 E-value=0.023 Score=64.59 Aligned_cols=206 Identities=14% Similarity=0.106 Sum_probs=124.6
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCc------ccccccceEEEEEeCCCCCHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDN------DVMNSFEIRMWVCVSDPFDEFR 245 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~------~~~~~f~~~~wv~~s~~~~~~~ 245 (954)
..+-+||.|..+|.+.+...-+. +...+.+.|.|.+|+|||..+..|.+.- .--..|. .+.|+.-.-....+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 34678999999998887655432 2345599999999999999999887731 1122333 34555555567899
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHHHhc-----CceeEEEecCCCCCCccChhhHHhhhcC-CCCCcEEEEecCch-
Q 036345 246 VARAIIEALEGSASNLGELQSLLQRIQTSIA-----GKKFLLVLDDMWTDDYSKWEPFNNCLMN-GLRGSKILVTTRKK- 318 (954)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iiiTtr~~- 318 (954)
++..|..++.+.... .....+.+..+.. .+..+|++|++..--...-+.+...+.| ..++|+++|-+-..
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 999999999876432 2233334444332 4468999998822111122335555555 35778877654221
Q ss_pred -h---------HHhhhcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhh
Q 036345 319 -T---------VAQMMESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSL 384 (954)
Q Consensus 319 -~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 384 (954)
+ ++..++ ...+...|.+.++-.++...+..+. ..-.....+=++++|+.-.|-.-.|+...-++
T Consensus 551 mdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1 111111 2467788888888888887766443 11223344555666666666666665554443
No 218
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.91 E-value=0.00073 Score=72.08 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=42.4
Q ss_pred ceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 173 EVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
+++|.++.++++++++.....+.....+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999997665432345689999999999999999999774
No 219
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.91 E-value=0.0046 Score=63.29 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=57.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGK 278 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 278 (954)
...+.++|.+|+|||+||..+++. ....-..+++++ ..+++..+-..... .....+ .+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSN---SETSEE----QLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhh---ccccHH----HHHHHhc-c
Confidence 347899999999999999999884 322234556664 34444444333321 111112 2223343 3
Q ss_pred eeEEEecCCCCCCccChhh--HHhhhcCC-CCCcEEEEecCc
Q 036345 279 KFLLVLDDMWTDDYSKWEP--FNNCLMNG-LRGSKILVTTRK 317 (954)
Q Consensus 279 r~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iiiTtr~ 317 (954)
.=+|||||+.......|.. +...+... ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488899997655556664 33333221 223347777754
No 220
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.88 E-value=0.0078 Score=71.99 Aligned_cols=133 Identities=15% Similarity=0.203 Sum_probs=75.7
Q ss_pred ceeechhhhhHHHHHhhccCC---CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH
Q 036345 173 EVRGRDEEKNSLKSKLLCESS---QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARA 249 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 249 (954)
.++|.+..++.|...+..... ........+.++|+.|+|||++|+.++.. .. ...+.++.+.-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhcccc----c
Confidence 589999999998888764311 11234567899999999999999999873 22 223344444321111 1
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHHhcC-ceeEEEecCCCCCCccChhhHHhhhcCC----C-------CCcEEEEecC
Q 036345 250 IIEALEGSASNLGELQSLLQRIQTSIAG-KKFLLVLDDMWTDDYSKWEPFNNCLMNG----L-------RGSKILVTTR 316 (954)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~----~-------~gs~iiiTtr 316 (954)
...+.+..++-...+ ....+.+.++. ..-+|+||++....++.+..+...+..+ . .++-||+||.
T Consensus 530 -~~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 530 -VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred -HHHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 122322221111100 01123333333 3469999999777777777777666533 1 2445777775
No 221
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.001 Score=68.86 Aligned_cols=82 Identities=22% Similarity=0.307 Sum_probs=49.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGK 278 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 278 (954)
..-+.++|.+|+|||.||.++.+. ....--.+.++++. +++.++...... ......+.+.+ .+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~~------el~~~Lk~~~~~--------~~~~~~l~~~l-~~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITAP------DLLSKLKAAFDE--------GRLEEKLLREL-KK 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEHH------HHHHHHHHHHhc--------CchHHHHHHHh-hc
Confidence 345889999999999999999985 33333346666644 444554444332 11122233322 22
Q ss_pred eeEEEecCCCCCCccChhh
Q 036345 279 KFLLVLDDMWTDDYSKWEP 297 (954)
Q Consensus 279 r~LlVlDdvw~~~~~~~~~ 297 (954)
-=||||||+-......|..
T Consensus 168 ~dlLIiDDlG~~~~~~~~~ 186 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEEA 186 (254)
T ss_pred CCEEEEecccCccCCHHHH
Confidence 2389999996655555553
No 222
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.86 E-value=0.0013 Score=62.69 Aligned_cols=101 Identities=25% Similarity=0.299 Sum_probs=66.7
Q ss_pred ceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch--hhhc
Q 036345 536 KLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK--EIEK 613 (954)
Q Consensus 536 ~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~--~i~~ 613 (954)
+.-.+++.+|++.. ...+..++.|.+|.+..|. +..+-|..-..+++|.+|.|.+| ++.++.+ .+..
T Consensus 43 ~~d~iDLtdNdl~~-l~~lp~l~rL~tLll~nNr----It~I~p~L~~~~p~l~~L~LtnN------si~~l~dl~pLa~ 111 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-LDNLPHLPRLHTLLLNNNR----ITRIDPDLDTFLPNLKTLILTNN------SIQELGDLDPLAS 111 (233)
T ss_pred ccceecccccchhh-cccCCCccccceEEecCCc----ceeeccchhhhccccceEEecCc------chhhhhhcchhcc
Confidence 34456677776654 3456677888888888876 55555555556777888888888 5555432 3566
Q ss_pred cCcCceeeccCcccccccc----cccCCCCccEEeccc
Q 036345 614 LKHLRFLKLSQVDLEELPE----TCCELVNLQTLDIEA 647 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~----~i~~L~~L~~L~L~~ 647 (954)
++.|+||.+-+|.+...+. -++++++|++||...
T Consensus 112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7788888887777665432 356667777777665
No 223
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.85 E-value=0.0037 Score=76.71 Aligned_cols=138 Identities=16% Similarity=0.227 Sum_probs=77.4
Q ss_pred CceeechhhhhHHHHHhhccCC---CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESS---QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
..++|.+..++.+...+..... .......++.++|+.|+|||+||+.+++. .-..-...+-++.+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 4689999999999887753321 11233456789999999999999888762 1111122333444332211111
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHHhcCce-eEEEecCCCCCCccChhhHHhhhcCC-----------CCCcEEEEecC
Q 036345 249 AIIEALEGSASNLGELQSLLQRIQTSIAGKK-FLLVLDDMWTDDYSKWEPFNNCLMNG-----------LRGSKILVTTR 316 (954)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtr 316 (954)
. .+.+..++-...++ ...+.+.++.++ -+|+||++...+++.++.+...+..+ ...+.+|+||.
T Consensus 585 --~-~l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 585 --S-KLIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred --H-HhcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 1 11121111111110 112344444454 58999999877777777777766543 13556777776
Q ss_pred c
Q 036345 317 K 317 (954)
Q Consensus 317 ~ 317 (954)
.
T Consensus 661 ~ 661 (821)
T CHL00095 661 L 661 (821)
T ss_pred c
Confidence 5
No 224
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.025 Score=61.82 Aligned_cols=150 Identities=18% Similarity=0.240 Sum_probs=86.3
Q ss_pred CCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHh
Q 036345 196 PNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSI 275 (954)
Q Consensus 196 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 275 (954)
......+.+.|++|+|||+||..++.. ..|+.+--++...- ++.. .......+.......-
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~m-------------iG~s--EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDM-------------IGLS--ESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHc-------------cCcc--HHHHHHHHHHHHHHhh
Confidence 346778889999999999999999874 45765433321111 0110 0001112222233333
Q ss_pred cCceeEEEecCCCCCCccChhh------------HHhhhcCC-CCCcE--EEEecCchhHHhhhcC----cceEeCCCCC
Q 036345 276 AGKKFLLVLDDMWTDDYSKWEP------------FNNCLMNG-LRGSK--ILVTTRKKTVAQMMES----TDVFSIKELS 336 (954)
Q Consensus 276 ~~kr~LlVlDdvw~~~~~~~~~------------l~~~l~~~-~~gs~--iiiTtr~~~v~~~~~~----~~~~~l~~L~ 336 (954)
+..--.||+||+.. .-+|-. |...+... ..|-| |+-||....+.+.|+- ...++++.++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 55667999999932 333432 22233221 23434 4457777888887764 4578899998
Q ss_pred H-HHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhc
Q 036345 337 K-QECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRC 371 (954)
Q Consensus 337 ~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c 371 (954)
. ++..+.++..- .-.+.+...++++...+|
T Consensus 674 ~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 7 77777777632 112234566666676666
No 225
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.011 Score=60.43 Aligned_cols=79 Identities=15% Similarity=0.239 Sum_probs=50.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcc--cccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDND--VMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIA 276 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 276 (954)
-++|.++|++|.|||+|.+.++..-. ..+.|....-+.+.. ..++..-... ...-+..+.+++.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 48999999999999999999988633 334454444444433 2222222211 22345566777777776
Q ss_pred Cce--eEEEecCC
Q 036345 277 GKK--FLLVLDDM 287 (954)
Q Consensus 277 ~kr--~LlVlDdv 287 (954)
++. +++.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 554 56778988
No 226
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.81 E-value=0.0056 Score=65.74 Aligned_cols=101 Identities=17% Similarity=0.127 Sum_probs=63.2
Q ss_pred hhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccccc-ccce-EEEEEeCC-CCCHHHHHHHHHHHhhc
Q 036345 180 EKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMN-SFEI-RMWVCVSD-PFDEFRVARAIIEALEG 256 (954)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~-~~wv~~s~-~~~~~~~~~~i~~~l~~ 256 (954)
-..++++.+..-. ...-+.|+|..|+|||||++.+++. +.. +-+. ++|+.+.+ ...+.++...+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 3445777776432 2345689999999999999998773 222 2233 46766655 45677888888776665
Q ss_pred CCCCcccHH-----HHHHHHHHHh--cCceeEEEecCC
Q 036345 257 SASNLGELQ-----SLLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 257 ~~~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDdv 287 (954)
...+..... .....+.+++ ++++++||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 432222211 1122222333 589999999999
No 227
>PRK04296 thymidine kinase; Provisional
Probab=96.81 E-value=0.0022 Score=63.59 Aligned_cols=113 Identities=11% Similarity=0.005 Sum_probs=61.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCC--cccHHHHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASN--LGELQSLLQRIQTSIAG 277 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 277 (954)
.++.|+|+.|.||||+|..+... ...+...++.+. ..++.+.....++++++..... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999777663 323333333332 1112222233445555432211 2233445555544 233
Q ss_pred ceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchh
Q 036345 278 KKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKT 319 (954)
Q Consensus 278 kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 319 (954)
+.-+||+|.+.--+.++...+...+ ...|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4458999999432222233333322 345788999998854
No 228
>PRK07261 topology modulation protein; Provisional
Probab=96.79 E-value=0.003 Score=61.40 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=39.3
Q ss_pred EEEEEecCCchHHHHHHHHhcCccc-ccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCce
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDV-MNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKK 279 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 279 (954)
.|.|+|++|+||||||+.+...... .-+.+...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 4889999999999999998763211 1133444442111 11233455556666666666
Q ss_pred eEEEecCCC
Q 036345 280 FLLVLDDMW 288 (954)
Q Consensus 280 ~LlVlDdvw 288 (954)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 5778873
No 229
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.75 E-value=0.01 Score=63.94 Aligned_cols=103 Identities=10% Similarity=0.089 Sum_probs=53.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC--HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHh
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD--EFRVARAIIEALEGSASNLGELQSLLQRIQTSI 275 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 275 (954)
..++|+++|++|+||||++..++.. ....-..+..++... +. ..+-+....+.++.+.....+...+...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt-~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDH-SRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCC-cchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 4589999999999999999988763 222212344555432 22 222223333333322111234445555554432
Q ss_pred cC-ceeEEEecCCCCCC--ccChhhHHhhhc
Q 036345 276 AG-KKFLLVLDDMWTDD--YSKWEPFNNCLM 303 (954)
Q Consensus 276 ~~-kr~LlVlDdvw~~~--~~~~~~l~~~l~ 303 (954)
.. +.=+|++|-.-... ......+...+.
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 21 23478888774322 223444544443
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.74 E-value=0.0021 Score=69.03 Aligned_cols=102 Identities=20% Similarity=0.287 Sum_probs=55.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCce
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKK 279 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 279 (954)
..+.++|..|+|||+||..+++. ....-..++++++.. ++..+... ... ...+.. ..+ +.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~~------l~~~l~~~-~~~--~~~~~~---~~~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTADE------LIEILREI-RFN--NDKELE---EVY-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHHH------HHHHHHHH-Hhc--cchhHH---HHH-HHhc-cC
Confidence 56999999999999999999884 322333566776432 33333221 111 111111 112 2222 22
Q ss_pred eEEEecCCCCCCccChhh--HHhhhcCC-CCCcEEEEecCc
Q 036345 280 FLLVLDDMWTDDYSKWEP--FNNCLMNG-LRGSKILVTTRK 317 (954)
Q Consensus 280 ~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iiiTtr~ 317 (954)
=||||||+.......|.. +...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 489999996554344432 44443321 234568888864
No 231
>PRK04132 replication factor C small subunit; Provisional
Probab=96.74 E-value=0.034 Score=66.75 Aligned_cols=155 Identities=12% Similarity=0.019 Sum_probs=97.3
Q ss_pred cCCchHHHHHHHHhcCccccccc-ceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEec
Q 036345 207 MGGIGKTTLAQFAYNDNDVMNSF-EIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLD 285 (954)
Q Consensus 207 ~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 285 (954)
|.++||||+|..++++- ....+ ..++-++++...... .+++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 78899999999999852 11122 235667777654444 334444433211100 01245799999
Q ss_pred CCCCCCccChhhHHhhhcCCCCCcEEEEecCch-hHHhhh-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHH
Q 036345 286 DMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKK-TVAQMM-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEI 363 (954)
Q Consensus 286 dvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 363 (954)
++...+.++...|...+......+++|+++.+. .+...+ .....+++++++.++....+...+....-..+ .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 998777777888888777655566777666554 333332 23568999999999998888775532221111 446
Q ss_pred HHHHHHhcCCChHHHHHH
Q 036345 364 GRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 364 ~~~i~~~c~glPlai~~~ 381 (954)
...|++.|+|.+..+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 714 LQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 677999999988654433
No 232
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.63 E-value=0.0087 Score=65.52 Aligned_cols=145 Identities=17% Similarity=0.125 Sum_probs=84.8
Q ss_pred ceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccc-----cc--------------ccceEE
Q 036345 173 EVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDV-----MN--------------SFEIRM 233 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-----~~--------------~f~~~~ 233 (954)
.++|-+....++..+..... .....+.++|+.|+||||+|..+.+.--- .. ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 45677777888888776432 13345999999999999999888763110 00 112344
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcE
Q 036345 234 WVCVSDPFD---EFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSK 310 (954)
Q Consensus 234 wv~~s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 310 (954)
.+..+.... ..+..+++.+....... .++.-++++|++.....+.-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444444333 22233333332221110 35677999999966555556666666666667788
Q ss_pred EEEecCc-hhHHhhhc-CcceEeCCCCCH
Q 036345 311 ILVTTRK-KTVAQMME-STDVFSIKELSK 337 (954)
Q Consensus 311 iiiTtr~-~~v~~~~~-~~~~~~l~~L~~ 337 (954)
+|++|.. ..+...+. ....+++++.+.
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchH
Confidence 8888873 33333222 245677777333
No 233
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.62 E-value=0.0075 Score=61.89 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=35.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHH
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRV 246 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 246 (954)
....++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 35679999999999999999888763 22334678899887 5555443
No 234
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.62 E-value=0.014 Score=57.77 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=96.9
Q ss_pred CCceeechhhhhH---HHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHH
Q 036345 171 VSEVRGRDEEKNS---LKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVA 247 (954)
Q Consensus 171 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 247 (954)
-++++|.|+.+.+ |.+.|..+..-..=.++-|..+|++|.|||.+|+++++...+ .| +-|.+.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~---l~vkat--------- 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL---LLVKAT--------- 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce---EEechH---------
Confidence 3568998876554 667776553222235678999999999999999999995332 22 112111
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHH-HHhcCceeEEEecCCCCCC--------ccCh----hhHHhhhcC--CCCCcEEE
Q 036345 248 RAIIEALEGSASNLGELQSLLQRIQ-TSIAGKKFLLVLDDMWTDD--------YSKW----EPFNNCLMN--GLRGSKIL 312 (954)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdvw~~~--------~~~~----~~l~~~l~~--~~~gs~ii 312 (954)
.-|-+.++ +....++.+. +.-+.-++++++|.+.... ..+. ..|...+.. .+.|...|
T Consensus 186 ~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 186 ELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 11111111 1112222222 2224568999999873210 1111 222222221 34676777
Q ss_pred EecCchhHHhh-hcC--cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCC
Q 036345 313 VTTRKKTVAQM-MES--TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGL 374 (954)
Q Consensus 313 iTtr~~~v~~~-~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 374 (954)
-.|........ +.. ...++...-+++|-.+++..++-.-.-+. ..-.+.++++.+|+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-----~~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV-----DADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc-----ccCHHHHHHHhCCC
Confidence 77766655432 121 34677777888999999988773322111 11134466666664
No 235
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.61 E-value=0.011 Score=68.57 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=35.7
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhc
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+++|.+..++.+...+... ...-+.|+|+.|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999988776532 233568999999999999999975
No 236
>PHA00729 NTP-binding motif containing protein
Probab=96.60 E-value=0.011 Score=59.17 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+...|.|+|.+|+||||||..+.+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999887
No 237
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.59 E-value=0.0058 Score=63.75 Aligned_cols=135 Identities=26% Similarity=0.241 Sum_probs=71.5
Q ss_pred eechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC-cccccccceEE----EEEeCCC---------
Q 036345 175 RGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND-NDVMNSFEIRM----WVCVSDP--------- 240 (954)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~f~~~~----wv~~s~~--------- 240 (954)
-+|..+..--.++|. ++.+..|.+.|.+|.|||-||-+..-. ...+..|...+ -|.++++
T Consensus 227 ~prn~eQ~~ALdlLl------d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLL------DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhc------CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 345666666777777 356889999999999999999443211 11223333222 2223321
Q ss_pred CCHHHHHHHHHHHhhcCC-CCcccHHHHHHHH-H---------HHhcCce---eEEEecCCCCCCccChhhHHhhhcCCC
Q 036345 241 FDEFRVARAIIEALEGSA-SNLGELQSLLQRI-Q---------TSIAGKK---FLLVLDDMWTDDYSKWEPFNNCLMNGL 306 (954)
Q Consensus 241 ~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l-~---------~~l~~kr---~LlVlDdvw~~~~~~~~~l~~~l~~~~ 306 (954)
..+.-.++.|...+..-. .+... +...+.+ . .+.+|+. -++|+|.+.+-.+ .++...+...+
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR~G 376 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTRAG 376 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHhcc
Confidence 111122333333332110 01111 2222222 1 2334543 4999999965443 44555566778
Q ss_pred CCcEEEEecCchh
Q 036345 307 RGSKILVTTRKKT 319 (954)
Q Consensus 307 ~gs~iiiTtr~~~ 319 (954)
.||||+.|.--.+
T Consensus 377 ~GsKIVl~gd~aQ 389 (436)
T COG1875 377 EGSKIVLTGDPAQ 389 (436)
T ss_pred CCCEEEEcCCHHH
Confidence 9999999875544
No 238
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.56 E-value=0.00086 Score=62.94 Aligned_cols=88 Identities=24% Similarity=0.185 Sum_probs=48.3
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeE
Q 036345 202 ISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFL 281 (954)
Q Consensus 202 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~L 281 (954)
|.++|++|+|||+||+.++.. .. ....-+.++...+..+++...--. ... .... ...+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~-~~~~-~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPS-NGQ-FEFK-DGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET--TTT-TCEE-E-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeec-ccc-cccc-cccccccc-----cceeE
Confidence 679999999999999999873 21 123446677777777665432211 000 0000 00011111 17889
Q ss_pred EEecCCCCCCccChhhHHhhh
Q 036345 282 LVLDDMWTDDYSKWEPFNNCL 302 (954)
Q Consensus 282 lVlDdvw~~~~~~~~~l~~~l 302 (954)
+|||++...+...+..+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999654544455555444
No 239
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.56 E-value=0.0039 Score=61.55 Aligned_cols=131 Identities=23% Similarity=0.200 Sum_probs=59.8
Q ss_pred chhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC--C-------HHH--
Q 036345 177 RDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF--D-------EFR-- 245 (954)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~-------~~~-- 245 (954)
+..+....++.|.. ..++.+.|++|.|||.||-...-+.-..+.|+..+++.-.-+. + ..+
T Consensus 5 ~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS--------
T ss_pred CCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 44455666666652 3389999999999999997776543334777777766421110 0 000
Q ss_pred --HHHHHHHHhhcCCCCcccHHHHHHHH------HHHhcCce---eEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEe
Q 036345 246 --VARAIIEALEGSASNLGELQSLLQRI------QTSIAGKK---FLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVT 314 (954)
Q Consensus 246 --~~~~i~~~l~~~~~~~~~~~~~~~~l------~~~l~~kr---~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiT 314 (954)
.+..+...+..-. .....+.+.+.- ..+++|+. .+||+|++.+..+.+ +...+-..+.||+||++
T Consensus 77 ~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~---~k~ilTR~g~~skii~~ 152 (205)
T PF02562_consen 77 EPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEE---LKMILTRIGEGSKIIIT 152 (205)
T ss_dssp -TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHH---HHHHHTTB-TT-EEEEE
T ss_pred HHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHH---HHHHHcccCCCcEEEEe
Confidence 1111111111100 111122211100 12345543 599999996654444 44445566789999998
Q ss_pred cCchh
Q 036345 315 TRKKT 319 (954)
Q Consensus 315 tr~~~ 319 (954)
--..+
T Consensus 153 GD~~Q 157 (205)
T PF02562_consen 153 GDPSQ 157 (205)
T ss_dssp E----
T ss_pred cCcee
Confidence 75543
No 240
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.019 Score=61.75 Aligned_cols=71 Identities=8% Similarity=0.089 Sum_probs=48.4
Q ss_pred CceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchh-HHhhhc-CcceEeCCCCCHHHHHHHHHHH
Q 036345 277 GKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKT-VAQMME-STDVFSIKELSKQECWSLFKRF 347 (954)
Q Consensus 277 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 347 (954)
+++-++|+|++..-+......+...+.....++.+|++|.+.. +...+. ....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4444556788877666667777777765545666777777644 443322 2568999999999998888653
No 241
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.55 E-value=0.0066 Score=61.52 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=36.5
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
..-.++.|+|++|+|||+++.+++.. ....-..++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 35689999999999999999887763 223346789999876 66555443
No 242
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.55 E-value=0.00073 Score=67.02 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=63.8
Q ss_pred ccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccc-----ccccccchhhhccCcCceeeccCcccc
Q 036345 554 IRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVE-----KSIREIPKEIEKLKHLRFLKLSQVDLE 628 (954)
Q Consensus 554 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-----~~l~~lp~~i~~L~~L~~L~L~~~~i~ 628 (954)
+..+..+..+++++|.........+...+.+-++|++-++++-..+.. .++..+...+-++++|+..+||.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 344666777788887632222233445566778888888886644321 112222334567899999999999876
Q ss_pred -cccc----cccCCCCccEEeccccCCCccc
Q 036345 629 -ELPE----TCCELVNLQTLDIEACGSLKRL 654 (954)
Q Consensus 629 -~lp~----~i~~L~~L~~L~L~~~~~l~~l 654 (954)
..|+ -|++-.+|.+|.+++|. +..+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 3443 36677899999999887 5433
No 243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.53 E-value=0.018 Score=70.12 Aligned_cols=183 Identities=15% Similarity=0.109 Sum_probs=94.2
Q ss_pred cCCceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD 242 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 242 (954)
.-+++.|.+..++++.+++..+-.. .-...+.+.++|++|+||||||+.+++. ....| +.++.+
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~---- 246 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP---- 246 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH----
Confidence 3345889999999988776432100 0123456889999999999999999884 22222 222211
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCc-----------cChhhHHhhhcCC-CCCcE
Q 036345 243 EFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDY-----------SKWEPFNNCLMNG-LRGSK 310 (954)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~~-~~gs~ 310 (954)
. +..... + .....+...+.........+|+|||+..... .....+...+... ..+..
T Consensus 247 --~----i~~~~~----g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 --E----IMSKYY----G-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred --H----Hhcccc----c-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 1 111100 0 1112222333333345668999999832110 0112233333221 23444
Q ss_pred EEE-ecCchh-HHhhhc----CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHH
Q 036345 311 ILV-TTRKKT-VAQMME----STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLA 377 (954)
Q Consensus 311 iii-Ttr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 377 (954)
++| ||.... +...+. -...+.+...+.++..+++....-... ...... ...+++.+.|.--+
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~d~~----l~~la~~t~G~~ga 383 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAEDVD----LDKLAEVTHGFVGA 383 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-CccccC----HHHHHHhCCCCCHH
Confidence 454 554432 211111 134677888888888888886542211 111112 34577888886533
No 244
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.52 E-value=0.0078 Score=59.03 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=27.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEE
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWV 235 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 235 (954)
...+|.+.|+.|+||||+|+.+++. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4569999999999999999999873 44445555555
No 245
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.46 E-value=0.017 Score=59.76 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=53.4
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHHhhcCCC------------C
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMN----SFEIRMWVCVSDPFDEFRVARAIIEALEGSAS------------N 260 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------~ 260 (954)
....++.|+|.+|+|||+||.+++-...... .-..++|++....++..++ .++++..+.... +
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCC
Confidence 3567999999999999999988864311111 1357899998887775444 444444332110 1
Q ss_pred cccHHHHHHHHHHHhc-C-ceeEEEecCC
Q 036345 261 LGELQSLLQRIQTSIA-G-KKFLLVLDDM 287 (954)
Q Consensus 261 ~~~~~~~~~~l~~~l~-~-kr~LlVlDdv 287 (954)
..+.......+.+.+. . +--+||+|.+
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 1122233344444442 3 4568888877
No 246
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.44 E-value=0.012 Score=60.11 Aligned_cols=44 Identities=16% Similarity=0.072 Sum_probs=32.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD 242 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 242 (954)
....++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 35679999999999999999888763 222334677887665554
No 247
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.44 E-value=0.002 Score=58.73 Aligned_cols=22 Identities=41% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
||+|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 248
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.42 E-value=0.028 Score=53.39 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCceeEEEecCCC-C-CCccChhhHHhhhcCCCCCcEEEEecCchhHHhhhc
Q 036345 265 QSLLQRIQTSIAGKKFLLVLDDMW-T-DDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQMME 325 (954)
Q Consensus 265 ~~~~~~l~~~l~~kr~LlVlDdvw-~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~~~ 325 (954)
++-.-.+.+.+-+++-+++=|+-- + +..-.|+-+.-+-.-+..|+.|+++|.+..+.+.+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 444455677777888899988541 1 222345443332223567999999999998877654
No 249
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.41 E-value=0.011 Score=55.84 Aligned_cols=117 Identities=15% Similarity=0.088 Sum_probs=61.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEE---EEeCCCCCHHHHHHHHHHHh-----hcC----CCC-ccc---
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMW---VCVSDPFDEFRVARAIIEAL-----EGS----ASN-LGE--- 263 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w---v~~s~~~~~~~~~~~i~~~l-----~~~----~~~-~~~--- 263 (954)
..|-|++..|.||||+|-..+-. ...+=..+.+ +...........+..+ ..+ +.. ..+ ..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46788899999999999555431 1112122333 2222233344433332 001 000 000 011
Q ss_pred HHHHHHHHHHHhcCcee-EEEecCCCC---CCccChhhHHhhhcCCCCCcEEEEecCchh
Q 036345 264 LQSLLQRIQTSIAGKKF-LLVLDDMWT---DDYSKWEPFNNCLMNGLRGSKILVTTRKKT 319 (954)
Q Consensus 264 ~~~~~~~l~~~l~~kr~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 319 (954)
.....+..++.+....| |||||++-. ...-..+.+...+.....+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11222333444444444 999999822 223445667777777677889999999854
No 250
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.40 E-value=0.029 Score=55.16 Aligned_cols=119 Identities=15% Similarity=0.138 Sum_probs=64.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEE---eCCCCCHHHHH------HHHHHHhhcCC------CCccc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVC---VSDPFDEFRVA------RAIIEALEGSA------SNLGE 263 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~~~~~~~------~~i~~~l~~~~------~~~~~ 263 (954)
-.+++|+|..|.|||||++.++... ......+++. +. ..+..... .++++.++... .....
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3589999999999999999998742 1223333332 21 11222211 12344443221 11122
Q ss_pred HHHHHHHHHHHhcCceeEEEecCCCC-CCccChhhHHhhhcCC-CC-CcEEEEecCchhHH
Q 036345 264 LQSLLQRIQTSIAGKKFLLVLDDMWT-DDYSKWEPFNNCLMNG-LR-GSKILVTTRKKTVA 321 (954)
Q Consensus 264 ~~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~-gs~iiiTtr~~~v~ 321 (954)
-+...-.+.+.+-..+-++++|+.-. -|....+.+...+..- .. |..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 23333345566667778999998732 2233344454444332 22 66788888876654
No 251
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.36 E-value=0.025 Score=53.21 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=57.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGK 278 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 278 (954)
-.+++|+|..|.|||||++.+..... .....+|+.-.. .+.-- .....-+...-.+.+.+-.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcC
Confidence 35899999999999999999987422 123333332100 00000 00112222333355666667
Q ss_pred eeEEEecCCCC-CCccChhhHHhhhcCCCCCcEEEEecCchhHHh
Q 036345 279 KFLLVLDDMWT-DDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQ 322 (954)
Q Consensus 279 r~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 322 (954)
+-++++|+.-. -|......+...+... +..||++|.+.....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 77899998732 2333444455555433 246778887765543
No 252
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.36 E-value=0.0052 Score=58.70 Aligned_cols=92 Identities=18% Similarity=0.176 Sum_probs=67.9
Q ss_pred hhcCCCCCCCCEEEEeeecCCCCCCcchh-cccCccEEEEeCcCCC--CcCCCCCCCCCCceEeecCCCCceEeCccccc
Q 036345 768 SEALRPNPNIEVLKIFQYKGKTVFPSWIM-SLCKLKVLLLSFCIKC--EIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLG 844 (954)
Q Consensus 768 ~~~l~~~~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~~c~~~--~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 844 (954)
++.+..++.|..|.+.+|.++. +-..+. .+++|+.|.|.+|.+. ..+.++..||.|++|.+-+|+.-..-.-..+-
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv 135 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYV 135 (233)
T ss_pred cccCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEE
Confidence 4556778899999999999888 544444 6789999999999865 45778899999999999999833222222221
Q ss_pred CCCCCCCCcCCcccccCcccceeeccccc
Q 036345 845 IGGDNGTSATSSVNVAFRKLKELAFWGLY 873 (954)
Q Consensus 845 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 873 (954)
. -.+|+|+.|+|.+..
T Consensus 136 l-------------~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 136 L-------------YKLPSLRTLDFQKVT 151 (233)
T ss_pred E-------------EecCcceEeehhhhh
Confidence 1 268999999988643
No 253
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.033 Score=62.07 Aligned_cols=179 Identities=12% Similarity=0.122 Sum_probs=94.8
Q ss_pred CCceeechhhhhHHHHHhhccCCC------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQ------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
-.++-|.+..+.++.+++...... +-..++-|.++|++|.|||.||+++++.-. -. ++.++.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--vP-----f~~isA----- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--VP-----FLSISA----- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--Cc-----eEeecc-----
Confidence 456889998888887776543221 123456788999999999999999999522 22 333332
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCc-cCh----------hhHHhhhcC---C---CC
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDY-SKW----------EPFNNCLMN---G---LR 307 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-~~~----------~~l~~~l~~---~---~~ 307 (954)
.+|+..+.+. +.+.+.+.+.+.-..-++++++|++.-..+ .+| .+|...+.. . +.
T Consensus 257 ---peivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 257 ---PEIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ---hhhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 1233333222 223333334444456789999999843110 111 122222211 1 22
Q ss_pred CcEEEE-ecCchhHHhhh---cC-cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCC
Q 036345 308 GSKILV-TTRKKTVAQMM---ES-TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGL 374 (954)
Q Consensus 308 gs~iii-Ttr~~~v~~~~---~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 374 (954)
+.-||= |+|-..+-..+ +. ...+.+.--++..-.+++...+-+-.. ...-++.. |++..-|.
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl-~g~~d~~q----lA~lTPGf 395 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRL-SGDFDFKQ----LAKLTPGF 395 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCC-CCCcCHHH----HHhcCCCc
Confidence 333333 34444332222 22 456777777777777777665533222 22233444 66666554
No 254
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.36 E-value=0.018 Score=59.14 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=53.1
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCccccccc------ceEEEEEeCCCCCHHHHHHHHHHHhhcCC---------CCc
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSF------EIRMWVCVSDPFDEFRVARAIIEALEGSA---------SNL 261 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~ 261 (954)
....++.|+|.+|+|||+||.+++... .... ..++|++....++...+. ++.+...... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 356799999999999999998876531 1122 467899988777765543 3344332210 011
Q ss_pred ccHHHHHHHHHHHhc----CceeEEEecCC
Q 036345 262 GELQSLLQRIQTSIA----GKKFLLVLDDM 287 (954)
Q Consensus 262 ~~~~~~~~~l~~~l~----~kr~LlVlDdv 287 (954)
.+.+++...+.+... .+.-+||+|.+
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 234444444444432 34458899987
No 255
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.031 Score=65.65 Aligned_cols=155 Identities=20% Similarity=0.214 Sum_probs=84.0
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCc---cccc--ccceEEEEEeCCCCCHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDN---DVMN--SFEIRMWVCVSDPFDEFR 245 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~--~f~~~~wv~~s~~~~~~~ 245 (954)
-.+++||+.|++++++.|..... +- -.++|.+|||||++|.-++..- .+-. ....++-.+
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~K----NN--PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD--------- 233 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTK----NN--PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD--------- 233 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCC----CC--CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec---------
Confidence 35689999999999999976542 11 2478999999999985554410 1111 111111111
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHHHh-cCceeEEEecCCCCC-------C--ccChhhHHhhhcCCCCCcEEEEec
Q 036345 246 VARAIIEALEGSASNLGELQSLLQRIQTSI-AGKKFLLVLDDMWTD-------D--YSKWEPFNNCLMNGLRGSKILVTT 315 (954)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~-------~--~~~~~~l~~~l~~~~~gs~iiiTt 315 (954)
+..-+.+. .-..+.++....+.+.+ +.++.++++|.+++- . .+.-.-+...|..+ .--.|=-||
T Consensus 234 ----~g~LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT 307 (786)
T COG0542 234 ----LGSLVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATT 307 (786)
T ss_pred ----HHHHhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEecc
Confidence 11111111 12234444444444444 455899999998651 0 11112233333332 222333455
Q ss_pred CchhHHhhh-------cCcceEeCCCCCHHHHHHHHHHH
Q 036345 316 RKKTVAQMM-------ESTDVFSIKELSKQECWSLFKRF 347 (954)
Q Consensus 316 r~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 347 (954)
-+ +.-..+ ...+.+.+..-+.+++..+++-.
T Consensus 308 ~~-EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LD-EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HH-HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 33 222221 23568899999999999988753
No 256
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.32 E-value=0.016 Score=58.19 Aligned_cols=210 Identities=12% Similarity=0.113 Sum_probs=114.5
Q ss_pred ceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHH----hcCcccccccceEEEEEeCCC--------
Q 036345 173 EVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFA----YNDNDVMNSFEIRMWVCVSDP-------- 240 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v----~~~~~~~~~f~~~~wv~~s~~-------- 240 (954)
.+.++++....+..... .++...+.++|+.|.||-|.+..+ |.---.+-.-+.+.|.+-+..
T Consensus 14 ~l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred hcccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 35666666666666554 235667899999999999987544 442111223344556554432
Q ss_pred -------------CCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCcee-EEEecCCCCCCccChhhHHhhhcCCC
Q 036345 241 -------------FDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKF-LLVLDDMWTDDYSKWEPFNNCLMNGL 306 (954)
Q Consensus 241 -------------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~~ 306 (954)
+..+-+.++++.+.....+- +.-..+.| ++|+-.+.+-..++...++.....-.
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qi------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQI------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcch------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 11222333333333221100 00112334 66676664434445555666555445
Q ss_pred CCcEEEEecCch--hHHhhhcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhh
Q 036345 307 RGSKILVTTRKK--TVAQMMESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSL 384 (954)
Q Consensus 307 ~gs~iiiTtr~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 384 (954)
..+|+|+...+. -+...-...-.+++..-+++|....+....-.++- ..+ .+++++|+++++|.---.-.+-..
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHHHHHHHHHH
Confidence 667877754332 22222122447899999999999999887644332 222 678899999999865433333222
Q ss_pred hcCC----------CCHHHHHHHHhhhhhc
Q 036345 385 LRFK----------KTREEWQRILDSEMWK 404 (954)
Q Consensus 385 l~~~----------~~~~~w~~~l~~~~~~ 404 (954)
++.+ -..-+|+-.+.+....
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHHHHH
Confidence 2211 1245788777654433
No 257
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.31 E-value=0.036 Score=62.93 Aligned_cols=180 Identities=18% Similarity=0.131 Sum_probs=90.6
Q ss_pred CceeechhhhhHHHHHhhc---c-CCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLC---E-SSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVA 247 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 247 (954)
+++.|.+..++.+...... . ..-.-...+-|.++|++|+|||.+|+.+++. ....| +-+..+. ++
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~------l~ 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK------LF 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH------hc
Confidence 4678877666666543211 0 0000134567899999999999999999884 22222 1122111 11
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCc-------cCh-hh----HHhhhcCCCCCcEEEEec
Q 036345 248 RAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDY-------SKW-EP----FNNCLMNGLRGSKILVTT 315 (954)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-------~~~-~~----l~~~l~~~~~gs~iiiTt 315 (954)
. ...+ .....+.+.+...-...+++|++|++..... ..+ .. +...+.....+.-||.||
T Consensus 297 ----~----~~vG-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 297 ----G----GIVG-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ----c----cccC-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 1 1001 0111222222222235789999999842100 001 11 112222223344556677
Q ss_pred CchhH-Hhhh----cCcceEeCCCCCHHHHHHHHHHHHcCCCCC-CCchhHHHHHHHHHHhcCCCh
Q 036345 316 RKKTV-AQMM----ESTDVFSIKELSKQECWSLFKRFAFFGRHP-SECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 316 r~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~c~glP 375 (954)
..... -..+ .-...+.++.-+.++-.++|..+....... ....++ ..+++.+.|.-
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl----~~La~~T~GfS 429 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDI----KKLSKLSNKFS 429 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCH----HHHHhhcCCCC
Confidence 55432 1111 124578899889999999998876432211 111223 34666666654
No 258
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.30 E-value=0.014 Score=57.99 Aligned_cols=88 Identities=16% Similarity=0.063 Sum_probs=50.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHhhcCC---CCcccH-HHHHHHHHH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD-PFDEFRVARAIIEALEGSA---SNLGEL-QSLLQRIQT 273 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~---~~~~~~-~~~~~~l~~ 273 (954)
++|+.++|+.|+||||.+.+++... ..+-..+..++... .....+-++..++.++.+. ....+. +...+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~--~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL--KLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH--hhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3699999999999999998777632 22234466666543 3345566777777777542 112222 223333433
Q ss_pred HhcCceeEEEecCCC
Q 036345 274 SIAGKKFLLVLDDMW 288 (954)
Q Consensus 274 ~l~~kr~LlVlDdvw 288 (954)
.-.++.=+|++|=.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322333478888663
No 259
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.30 E-value=0.0024 Score=71.62 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=40.3
Q ss_pred ceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhc
Q 036345 173 EVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+++|.++.+++|++.|.....+-....+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 6899999999999998433222234567999999999999999999987
No 260
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.28 E-value=0.061 Score=65.56 Aligned_cols=180 Identities=14% Similarity=0.159 Sum_probs=94.7
Q ss_pred CCceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
-.++.|.+..+++|.+.+..+-.. .-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~---- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG---- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----
Confidence 345788888888777765421100 0123455889999999999999999984 22222 22221
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCC------C-ccC-----hhhHHhhhcC--CCCCc
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTD------D-YSK-----WEPFNNCLMN--GLRGS 309 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~------~-~~~-----~~~l~~~l~~--~~~gs 309 (954)
. +++....+ .....+...+...-+..+.+|+||++..- . ... ...+...+.. ...+.
T Consensus 521 ~----~l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 521 P----EILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred H----HHhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 1 11111111 11112222223333456789999998421 0 001 1112222322 22345
Q ss_pred EEEEecCchhHHhh--hc---CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 036345 310 KILVTTRKKTVAQM--ME---STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 310 ~iiiTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 375 (954)
.||.||........ +. -...+.++..+.++-.++|..+..... ....-++ ..+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCCH----HHHHHHcCCCC
Confidence 56667765543321 11 245788999999999999976553221 1122233 34677777754
No 261
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.26 E-value=0.0015 Score=65.22 Aligned_cols=107 Identities=22% Similarity=0.238 Sum_probs=65.3
Q ss_pred cCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCc--ccc-cccccccCCCCccEEeccccCCCc---cccc
Q 036345 583 DQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQV--DLE-ELPETCCELVNLQTLDIEACGSLK---RLPQ 656 (954)
Q Consensus 583 ~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~---~lp~ 656 (954)
-.+..|..|++.++..+ .+.. +..|++|++|.++.| ++. .++....++++|++|++++|+ +. .++.
T Consensus 40 d~~~~le~ls~~n~glt---t~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p 111 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLT---TLTN----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP 111 (260)
T ss_pred ccccchhhhhhhcccee---eccc----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch
Confidence 34555666666655222 2222 445778889999888 444 666667777899999998886 33 3332
Q ss_pred cccCCCCCCEEeccCccccccCC---CCCCCCCCCCccCceEecC
Q 036345 657 GIGKLVNLRHLMISHNVYLDYMP---KGIERLTCLRTLRELVVSR 698 (954)
Q Consensus 657 ~i~~l~~L~~L~l~~~~~~~~~p---~~i~~L~~L~~L~~~~~~~ 698 (954)
+.++.+|..|++.+|......- ..+.-+++|+.|+.+.+..
T Consensus 112 -l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 112 -LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred -hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 5667788888888775433110 1133456666666655543
No 262
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.26 E-value=0.028 Score=55.14 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=59.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhh--cC-------------CCCcccH
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALE--GS-------------ASNLGEL 264 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~--~~-------------~~~~~~~ 264 (954)
.+++|+|+.|.|||||++.++..... ....+++.-. +........-+.++ .+ ......-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 48999999999999999999774211 1222222110 11111001111110 00 0011112
Q ss_pred HHHHHHHHHHhcCceeEEEecCCCCC-CccChhhHHhhhcCCCCCcEEEEecCchhHHh
Q 036345 265 QSLLQRIQTSIAGKKFLLVLDDMWTD-DYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQ 322 (954)
Q Consensus 265 ~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 322 (954)
+...-.+.+.+-.++=++++|+.... |....+.+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22333355566677788999988432 22333334444443234677888888877654
No 263
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.015 Score=63.56 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...++.++|++|+||||++.+++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998876
No 264
>PRK13695 putative NTPase; Provisional
Probab=96.25 E-value=0.0053 Score=60.08 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 265
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.24 E-value=0.017 Score=61.85 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=46.8
Q ss_pred hhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc----cccceEEEEEeCCCCCHHHHHHHHHHHhhc
Q 036345 181 KNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM----NSFEIRMWVCVSDPFDEFRVARAIIEALEG 256 (954)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 256 (954)
...|.++|... -...+++-|+|++|+|||+|+.+++-..... ..=..++|++....|+.+++. ++++.++.
T Consensus 82 ~~~LD~lLgGG----i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 82 SQALDGILGGG----IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred CHHHHHHhCCC----CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 34444555432 2356789999999999999997765321111 112468999999988888765 45666654
No 266
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.23 E-value=0.016 Score=55.98 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=28.7
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF 241 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 241 (954)
++.|+|.+|+||||++..+... ....-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcch
Confidence 3689999999999999998774 22233567787776544
No 267
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.21 E-value=0.016 Score=60.32 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=39.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccc----cccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVM----NSFEIRMWVCVSDPFDEFRVARAIIEALE 255 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 255 (954)
...+.=|+|.+|+|||.|+-+++-..... +.=..++|++....|...++. +|++...
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 34588999999999999997665332221 222468999999999887765 5666543
No 268
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.21 E-value=0.0063 Score=58.65 Aligned_cols=131 Identities=17% Similarity=0.120 Sum_probs=65.2
Q ss_pred eeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHH
Q 036345 174 VRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEA 253 (954)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 253 (954)
++|....+.++.+.+..... .. .-|.|+|..|+||+.+|+.+++... ..-...+-|+++. .+.+ .+ -..
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~-~~~~-~~---e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAA-LPEE-LL---ESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTT-S-HH-HH---HHH
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhh-hhcc-hh---hhh
Confidence 46777888888887765543 12 3466999999999999999988421 1112233344443 2222 22 223
Q ss_pred hhcCCCCc-ccH-HHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCC------C-----CCcEEEEecCch
Q 036345 254 LEGSASNL-GEL-QSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNG------L-----RGSKILVTTRKK 318 (954)
Q Consensus 254 l~~~~~~~-~~~-~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------~-----~gs~iiiTtr~~ 318 (954)
+.+...+. ... ......+.. ...=-|+||++..-....-..|...+..+ . -..|||.||...
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred hhccccccccccccccCCceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 33321110 000 000011211 22235788999665554445565555422 1 256888888754
No 269
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.026 Score=55.04 Aligned_cols=118 Identities=17% Similarity=0.149 Sum_probs=60.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC--CCCHHHHHHHHHHHhh--cCCCC----------cccH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD--PFDEFRVARAIIEALE--GSASN----------LGEL 264 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~--~~~~~----------~~~~ 264 (954)
-.+++|+|+.|.|||||.+.++.-.. .....+++.-.. ....... .+.++ .+... ...-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 35899999999999999999987421 122223221100 0001110 01111 00000 1111
Q ss_pred HHHHHHHHHHhcCceeEEEecCCCCC-CccChhhHHhhhcCCCCCcEEEEecCchhHHhh
Q 036345 265 QSLLQRIQTSIAGKKFLLVLDDMWTD-DYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQM 323 (954)
Q Consensus 265 ~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~ 323 (954)
+...-.+.+.+-.++=++++|+-... |......+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 22223345556667779999987431 233334444444433335678888888766543
No 270
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.18 E-value=0.11 Score=62.89 Aligned_cols=134 Identities=14% Similarity=0.123 Sum_probs=73.6
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH-H
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARA-I 250 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~-i 250 (954)
..++|+...+.++.+.+..... ...-|.|+|..|+|||++|+.+++.... .-...+.+++..-. ...+.. +
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~--~~~~~~~l 447 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMP--AGLLESDL 447 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCC--hhHhhhhh
Confidence 4699999888888776654432 2346889999999999999999874211 11233445544321 122222 1
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCC-----------CCcEEEEecCch
Q 036345 251 IEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGL-----------RGSKILVTTRKK 318 (954)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr~~ 318 (954)
.....+...+.. ......+ -....=.|+||||..-.......+...+..+. .+.|||.||...
T Consensus 448 fg~~~~~~~g~~--~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 448 FGHERGAFTGAS--AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cCcccccccccc--cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 111011100100 0111112 11223469999997666555666766664321 345888888653
No 271
>PRK06696 uridine kinase; Validated
Probab=96.15 E-value=0.0052 Score=62.82 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=34.6
Q ss_pred chhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 177 RDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
|++-+++|.+.+.... .....+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 5666778888776533 346789999999999999999999873
No 272
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.14 E-value=0.0037 Score=58.44 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=61.7
Q ss_pred eechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccc-ccccceEEEEEeCCCCCHHHHHHHHHHH
Q 036345 175 RGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDV-MNSFEIRMWVCVSDPFDEFRVARAIIEA 253 (954)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 253 (954)
||+-..++++.+.+..-.. ...-|.|+|..|+||+++|+.++..... ...|.. +.+... . .
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~-~-----~----- 62 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASL-P-----A----- 62 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCT-C-----H-----
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhC-c-----H-----
Confidence 4666677777776654432 2335789999999999999998874221 112211 011110 0 1
Q ss_pred hhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcC-CCCCcEEEEecCch
Q 036345 254 LEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMN-GLRGSKILVTTRKK 318 (954)
Q Consensus 254 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iiiTtr~~ 318 (954)
+.+ +. .+.--++|+|+..-+.+....+...+.. .....|+|.||+..
T Consensus 63 ---------------~~l-~~--a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 63 ---------------ELL-EQ--AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------------HHH-HH--CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------------HHH-HH--cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111 11 2444578999966665666667766654 35678999998754
No 273
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.11 E-value=0.036 Score=56.37 Aligned_cols=125 Identities=19% Similarity=0.159 Sum_probs=71.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC-----CCCHHHHHHHHHHHhhcCC-------CCcccHHH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD-----PFDEFRVARAIIEALEGSA-------SNLGELQS 266 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~-------~~~~~~~~ 266 (954)
..+++|||..|.||||+++.+..-.. .-...++..-.+ .....+...++++.++... .....-+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 45899999999999999999987322 222333333111 1223344556666665431 11222233
Q ss_pred HHHHHHHHhcCceeEEEecCCCCC-CccChhhHHhhhcC--CCCCcEEEEecCchhHHhhhcC
Q 036345 267 LLQRIQTSIAGKKFLLVLDDMWTD-DYSKWEPFNNCLMN--GLRGSKILVTTRKKTVAQMMES 326 (954)
Q Consensus 267 ~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~iiiTtr~~~v~~~~~~ 326 (954)
-.-.+.+.+.-+.-++|.|+.-+. |...-..+...+.. ...|-..++-|.+-.++..+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 334467788888999999987331 11111223222322 2356678888888888776543
No 274
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.11 E-value=0.027 Score=54.69 Aligned_cols=122 Identities=11% Similarity=0.147 Sum_probs=64.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC---cccccc---cc--eEEEEEeCCCCCHHHHHHHHHHHhhcCCC--C-----ccc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND---NDVMNS---FE--IRMWVCVSDPFDEFRVARAIIEALEGSAS--N-----LGE 263 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~---~~~~~~---f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~-----~~~ 263 (954)
-.+++|+|+.|+|||||.+.+..+ ..+... |. .+.|+ .+ .+.++.++.... + ...
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 358999999999999999988632 111111 11 12232 22 345555553321 1 111
Q ss_pred HHHHHHHHHHHhcCc--eeEEEecCCCC-CCccChhhHHhhhcC-CCCCcEEEEecCchhHHhhhcCcceEeC
Q 036345 264 LQSLLQRIQTSIAGK--KFLLVLDDMWT-DDYSKWEPFNNCLMN-GLRGSKILVTTRKKTVAQMMESTDVFSI 332 (954)
Q Consensus 264 ~~~~~~~l~~~l~~k--r~LlVlDdvw~-~~~~~~~~l~~~l~~-~~~gs~iiiTtr~~~v~~~~~~~~~~~l 332 (954)
-+...-.+.+.+-.+ .=++++|+.-. -+......+...+.. ...|..||++|.+...... .+.++.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 222333345555556 67888898732 122333334444432 1246778888888776543 3344444
No 275
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.11 E-value=0.031 Score=57.69 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=53.7
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCC------------------
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSA------------------ 258 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------------ 258 (954)
+...++.|+|.+|+|||++|.++... ..+ +=..++|++..+ +..++..++ ++++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~--~~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTEN--TSKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCC--CHHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 35678999999999999999888542 122 235688888865 345555543 3332110
Q ss_pred --CCcccHHHHHHHHHHHhcC-ceeEEEecCCC
Q 036345 259 --SNLGELQSLLQRIQTSIAG-KKFLLVLDDMW 288 (954)
Q Consensus 259 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw 288 (954)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112234566666666643 55589999873
No 276
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.10 E-value=0.0047 Score=59.71 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=28.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccc-cccceEEEEEeCCC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVM-NSFEIRMWVCVSDP 240 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s~~ 240 (954)
..++.++|+.|+|||.||+.+.+- .. +.....+-++.+.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcc
Confidence 468899999999999999998873 32 33345555665543
No 277
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.09 E-value=0.013 Score=62.26 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=53.4
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCC-----CCcccHHHHHHHH
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSA-----SNLGELQSLLQRI 271 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 271 (954)
+.-+++-|+|++|+||||||.++... ....-..++|++..+.++.. .+++++.+. ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35679999999999999999877653 22333567899877765543 344444321 1122344555555
Q ss_pred HHHhc-CceeEEEecCC
Q 036345 272 QTSIA-GKKFLLVLDDM 287 (954)
Q Consensus 272 ~~~l~-~kr~LlVlDdv 287 (954)
....+ +..-+||+|.|
T Consensus 126 ~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHHhhccCCcEEEEcch
Confidence 55443 45569999988
No 278
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.09 E-value=0.014 Score=62.05 Aligned_cols=84 Identities=20% Similarity=0.193 Sum_probs=53.5
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCC-----CCcccHHHHHHHH
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSA-----SNLGELQSLLQRI 271 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 271 (954)
+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .+++++.+. ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 35678999999999999999887653 22334568899887766653 334443221 1122344555555
Q ss_pred HHHhc-CceeEEEecCC
Q 036345 272 QTSIA-GKKFLLVLDDM 287 (954)
Q Consensus 272 ~~~l~-~kr~LlVlDdv 287 (954)
....+ +.--+||+|.|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55443 44568999987
No 279
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.09 E-value=0.017 Score=61.17 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=45.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC-CHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF-DEFRVARAIIEALEGSASNLGELQSLLQRIQTSIA 276 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 276 (954)
..++++|+|+.|+||||++..++.....+..-..+..|+..... .....+..-.+.++.......+...+...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 46799999999999999998887632222111245556544311 122222222333332222223334444444433 3
Q ss_pred CceeEEEecCC
Q 036345 277 GKKFLLVLDDM 287 (954)
Q Consensus 277 ~kr~LlVlDdv 287 (954)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 347777754
No 280
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.08 E-value=0.05 Score=52.61 Aligned_cols=118 Identities=12% Similarity=0.015 Sum_probs=61.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCccc-ccc--cc---eEEEEEeCCCCCHHHHHHHHHHHhhc-CCCCcccHHHHHHHH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDV-MNS--FE---IRMWVCVSDPFDEFRVARAIIEALEG-SASNLGELQSLLQRI 271 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~l 271 (954)
-.+++|+|..|.|||||++.+...... .+. ++ ...+ +.+..... ...+.+.+.. .......-+...-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccc--cccHHHHhhccCCCCCCHHHHHHHHH
Confidence 348999999999999999999874221 111 11 1222 23322111 0122222221 111222233334445
Q ss_pred HHHhcCceeEEEecCCCC-CCccChhhHHhhhcCCCCCcEEEEecCchhHHh
Q 036345 272 QTSIAGKKFLLVLDDMWT-DDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQ 322 (954)
Q Consensus 272 ~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 322 (954)
.+.+-.++=++++|+--. -|......+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 566666777889998732 1223333344444432 456888887776554
No 281
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.08 E-value=0.043 Score=53.36 Aligned_cols=103 Identities=17% Similarity=0.047 Sum_probs=56.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEE------eCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVC------VSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQ 272 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 272 (954)
-.+++|+|+.|+|||||++.+..-.. .....+++. +.+... ...-+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 34899999999999999999987321 112222221 112111 122223333455
Q ss_pred HHhcCceeEEEecCCCCC-CccChhhHHhhhcCC-CC-CcEEEEecCchhHHh
Q 036345 273 TSIAGKKFLLVLDDMWTD-DYSKWEPFNNCLMNG-LR-GSKILVTTRKKTVAQ 322 (954)
Q Consensus 273 ~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~-gs~iiiTtr~~~v~~ 322 (954)
+.+-.++=++++|+.-.. |......+...+... .. +..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 666677788999987321 222233333333321 12 356777777765544
No 282
>PTZ00494 tuzin-like protein; Provisional
Probab=96.07 E-value=0.86 Score=49.57 Aligned_cols=168 Identities=16% Similarity=0.165 Sum_probs=107.2
Q ss_pred ccccCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHH
Q 036345 167 ALINVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRV 246 (954)
Q Consensus 167 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 246 (954)
.......+|.|+.|-..+...|.+.. ...++++.+.|.-|.||++|.+.....+. -..++|++... ++.
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDt 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDT 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cch
Confidence 34456789999998888888887665 45789999999999999999998876433 24577887754 456
Q ss_pred HHHHHHHhhcCCCCc--ccHHHHHHHHH---HHhcCceeEEEecCCCCCCccChhhHH---hhhcCCCCCcEEEEecCch
Q 036345 247 ARAIIEALEGSASNL--GELQSLLQRIQ---TSIAGKKFLLVLDDMWTDDYSKWEPFN---NCLMNGLRGSKILVTTRKK 318 (954)
Q Consensus 247 ~~~i~~~l~~~~~~~--~~~~~~~~~l~---~~l~~kr~LlVlDdvw~~~~~~~~~l~---~~l~~~~~gs~iiiTtr~~ 318 (954)
++.|++.++.+..+. +-++-+.+... ....++.-+||+-==. -+....+. ..|.....-++|++---.+
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLRE---GssL~RVYnE~vaLacDrRlCHvv~EVplE 511 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLRE---GSDLGRVYGEVVSLVSDCQACHIVLAVPMK 511 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEecc---CCcHHHHHHHHHHHHccchhheeeeechHh
Confidence 778888888764332 12232333222 2334665566654221 11122211 1244455677888766555
Q ss_pred hHHhhh---cCcceEeCCCCCHHHHHHHHHHHH
Q 036345 319 TVAQMM---ESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 319 ~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
.+.-.. ..-..|.+..++.++|.++-.+..
T Consensus 512 SLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 512 ALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 433221 224589999999999999887753
No 283
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.00073 Score=67.30 Aligned_cols=100 Identities=21% Similarity=0.248 Sum_probs=68.3
Q ss_pred ccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccc--c
Q 036345 556 YAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPE--T 633 (954)
Q Consensus 556 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~--~ 633 (954)
.+.+.+.|++++|. +.+ -++...|+.|.||.|+-| .|..+ ..+..+++|+.|.|+.|.|..+-+ -
T Consensus 17 dl~~vkKLNcwg~~----L~D--Isic~kMp~lEVLsLSvN------kIssL-~pl~rCtrLkElYLRkN~I~sldEL~Y 83 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG----LDD--ISICEKMPLLEVLSLSVN------KISSL-APLQRCTRLKELYLRKNCIESLDELEY 83 (388)
T ss_pred HHHHhhhhcccCCC----ccH--HHHHHhcccceeEEeecc------ccccc-hhHHHHHHHHHHHHHhcccccHHHHHH
Confidence 35566777888776 333 134577888999999888 66666 347788888888888888876643 3
Q ss_pred ccCCCCccEEeccccCCCccccc-----cccCCCCCCEEe
Q 036345 634 CCELVNLQTLDIEACGSLKRLPQ-----GIGKLVNLRHLM 668 (954)
Q Consensus 634 i~~L~~L~~L~L~~~~~l~~lp~-----~i~~l~~L~~L~ 668 (954)
+.+|++|++|.|..|.-...-+. .+.-|++|+.||
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 57788888888877664444332 244566666664
No 284
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.01 E-value=0.024 Score=61.15 Aligned_cols=71 Identities=17% Similarity=0.100 Sum_probs=47.0
Q ss_pred hhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc----cccceEEEEEeCCCCCHHHHHHHHHHHhhc
Q 036345 181 KNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM----NSFEIRMWVCVSDPFDEFRVARAIIEALEG 256 (954)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 256 (954)
...|.++|... -....++-|+|.+|+|||+|+..++-..... ..-..++|++....|..+++ .+|++.++.
T Consensus 109 ~~~LD~lL~GG----~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 109 SRELDKILEGG----IETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred CHHHHHhhcCC----CcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 34444555432 2356788999999999999998776421111 11136899999999988775 456666543
No 285
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.017 Score=62.85 Aligned_cols=89 Identities=15% Similarity=0.108 Sum_probs=48.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD-PFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIA 276 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 276 (954)
..+++.++|+.|+||||++.++......+.....+..++... .....+-+....+.++.......+..++...+.+ +.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 346899999999999999998877321111123455555332 1233444555555555432222222333333333 34
Q ss_pred CceeEEEecCCC
Q 036345 277 GKKFLLVLDDMW 288 (954)
Q Consensus 277 ~kr~LlVlDdvw 288 (954)
++ =+|++|..-
T Consensus 215 ~~-DlVLIDTaG 225 (374)
T PRK14722 215 NK-HMVLIDTIG 225 (374)
T ss_pred CC-CEEEEcCCC
Confidence 44 456699884
No 286
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.99 E-value=0.028 Score=60.36 Aligned_cols=70 Identities=17% Similarity=0.091 Sum_probs=45.4
Q ss_pred hhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc----cccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 036345 181 KNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM----NSFEIRMWVCVSDPFDEFRVARAIIEALE 255 (954)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 255 (954)
...+.++|... -....++.|+|.+|+|||||+..++...... ..-..++|++....+...+ +.++++.++
T Consensus 82 ~~~lD~ll~gG----i~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 82 SKELDKLLGGG----IETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred CHHHHHHhcCC----CCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 34455555432 2356899999999999999998876421111 1123579999888888776 444555544
No 287
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.96 E-value=0.056 Score=54.02 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCceeEEEecCCC-CCCccChhhHHhhhcCC--CCCcEEEEecCchhHHhhhc
Q 036345 264 LQSLLQRIQTSIAGKKFLLVLDDMW-TDDYSKWEPFNNCLMNG--LRGSKILVTTRKKTVAQMME 325 (954)
Q Consensus 264 ~~~~~~~l~~~l~~kr~LlVlDdvw-~~~~~~~~~l~~~l~~~--~~gs~iiiTtr~~~v~~~~~ 325 (954)
-+.-.-.+.+.+-..+-+|+-|+-- +-|...-..+...+... ..|..||+.|.+..+|..++
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 3444556777888888889999751 11222333444444432 45889999999999998643
No 288
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.059 Score=61.00 Aligned_cols=160 Identities=15% Similarity=0.182 Sum_probs=82.9
Q ss_pred CCceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
-+++-|.|+-+.+|.+.+..+... .-...+-|..+|++|.|||++|+.+++. ....| +.+..+
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp--- 502 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP--- 502 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH---
Confidence 345667877777776555433211 0245677899999999999999999994 33344 223221
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCC-------ccChhhHHhh-hc--CC-C--CCcE
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDD-------YSKWEPFNNC-LM--NG-L--RGSK 310 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~-------~~~~~~l~~~-l~--~~-~--~gs~ 310 (954)
+++...-++ +...+.+...+.-+--..+++||.+..-. ...-+.+... |. ++ . .+.-
T Consensus 503 -----EL~sk~vGe-----SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 503 -----ELFSKYVGE-----SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred -----HHHHHhcCc-----hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 111211111 11122222222323446888999873210 0011122222 21 12 1 2222
Q ss_pred EEEec-CchhHHhh-hc---CcceEeCCCCCHHHHHHHHHHHHcC
Q 036345 311 ILVTT-RKKTVAQM-ME---STDVFSIKELSKQECWSLFKRFAFF 350 (954)
Q Consensus 311 iiiTt-r~~~v~~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~ 350 (954)
||-.| |...+-.. +. -+..+.+++-+.+...++|+.++-.
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 33334 33333222 33 2567888888888888999988743
No 289
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.94 E-value=0.031 Score=60.30 Aligned_cols=59 Identities=17% Similarity=0.107 Sum_probs=42.3
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCccc----ccccceEEEEEeCCCCCHHHHHHHHHHHhhc
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDV----MNSFEIRMWVCVSDPFDEFRVARAIIEALEG 256 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 256 (954)
....++-|+|.+|+|||+|+.+++-.... .+.-..++|++....|..+++.. +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 35678899999999999999877532111 11224689999999999888654 5666654
No 290
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.94 E-value=0.026 Score=54.43 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=61.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC--CCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD--PFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAG 277 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 277 (954)
.+++|+|..|.|||||.+.++... ......+++.-.. ..+..+... +.++-. .+...-+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHhc
Confidence 489999999999999999998742 2233444443211 111111110 111110 0122223333445566667
Q ss_pred ceeEEEecCCCC-CCccChhhHHhhhcCC-CCCcEEEEecCchhHH
Q 036345 278 KKFLLVLDDMWT-DDYSKWEPFNNCLMNG-LRGSKILVTTRKKTVA 321 (954)
Q Consensus 278 kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~v~ 321 (954)
++-++++|+.-. -|......+...+... ..|..||++|.+....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 778899998732 2333344444444332 3466788888886643
No 291
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.94 E-value=0.024 Score=62.01 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=32.7
Q ss_pred HHHHHHHhcCceeEEEecCCCCC-CccChhhHHhhhcC-CCCCcEEEEecCchhHHhhh
Q 036345 268 LQRIQTSIAGKKFLLVLDDMWTD-DYSKWEPFNNCLMN-GLRGSKILVTTRKKTVAQMM 324 (954)
Q Consensus 268 ~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iiiTtr~~~v~~~~ 324 (954)
.-.|.+.+-+.++|+|||+--.. |.+-=..+...+.. ...|..+|+.|..+.+...+
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 34467788899999999976321 11111124444432 34566666666666665543
No 292
>PRK09354 recA recombinase A; Provisional
Probab=95.92 E-value=0.019 Score=61.62 Aligned_cols=84 Identities=20% Similarity=0.212 Sum_probs=54.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCC-----CCcccHHHHHHHH
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSA-----SNLGELQSLLQRI 271 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 271 (954)
+.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .+++++.+. ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35679999999999999999877653 22334568899988877653 344444321 1122345555555
Q ss_pred HHHhc-CceeEEEecCC
Q 036345 272 QTSIA-GKKFLLVLDDM 287 (954)
Q Consensus 272 ~~~l~-~kr~LlVlDdv 287 (954)
...++ ++.-+||+|-|
T Consensus 131 ~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHHhhcCCCCEEEEeCh
Confidence 55553 44568999998
No 293
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.92 E-value=0.013 Score=58.65 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=58.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH-HHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF-RVARAIIEALEGSASNLGELQSLLQRIQTSIAGK 278 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 278 (954)
++|.|+|+.|+||||+++.+... ........++.- ..+.... .-...++.+-.. ..+.....+.++..++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPIEFVHESKRSLINQREV----GLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCccccccCccceeeeccc----CCCccCHHHHHHHHhcCC
Confidence 47899999999999999987663 222233333332 2211100 000011111000 111233455667777666
Q ss_pred eeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHHh
Q 036345 279 KFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQ 322 (954)
Q Consensus 279 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 322 (954)
.=++++|++- +.+.+..+... ...|-.++.|+...++..
T Consensus 75 pd~ii~gEir--d~e~~~~~l~~---a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMR--DLETIRLALTA---AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCC--CHHHHHHHHHH---HHcCCEEEEEecCCcHHH
Confidence 7799999994 33333333222 234556888887766554
No 294
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.88 E-value=0.044 Score=61.41 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=51.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC-HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD-EFRVARAIIEALEGSASNLGELQSLLQRIQTSIAG 277 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 277 (954)
.+++.++|++|+||||++..++........-..+..|+....-. ..+.+....+.++.......+.+++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 46999999999999999887765311012223566666543210 11122222333332222223334444445433 2
Q ss_pred ceeEEEecCCCC--CCccChhhHHhhhc
Q 036345 278 KKFLLVLDDMWT--DDYSKWEPFNNCLM 303 (954)
Q Consensus 278 kr~LlVlDdvw~--~~~~~~~~l~~~l~ 303 (954)
..=+|++|..-. .+......+...+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 345788997633 22223334544444
No 295
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.87 E-value=0.026 Score=58.29 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=52.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccc-eEEEEEeCCCCC-HHHHHHHHHHHhhcC-------CCCcccHH---
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFE-IRMWVCVSDPFD-EFRVARAIIEALEGS-------ASNLGELQ--- 265 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~--- 265 (954)
.-.-++|+|..|+|||||++.+++. ++.+|+ .++++-+.+... +.++...+.+.=... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3456899999999999999999984 444453 456666666443 344444443321100 11111111
Q ss_pred --HHHHHHHHHh--c-CceeEEEecCC
Q 036345 266 --SLLQRIQTSI--A-GKKFLLVLDDM 287 (954)
Q Consensus 266 --~~~~~l~~~l--~-~kr~LlVlDdv 287 (954)
...-.+.+++ + ++.+|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122344555 3 89999999999
No 296
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.85 E-value=0.11 Score=60.79 Aligned_cols=136 Identities=13% Similarity=0.043 Sum_probs=74.4
Q ss_pred ccCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 169 INVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
.....++|....++++.+.+..... ...-|.|+|..|+|||++|+.+++... ..-...+.|++..-. ...+.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~--~~~~~ 264 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALS--ETLLE 264 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCC--HHHHH
Confidence 3456799999999998887765442 233578999999999999999987421 111223444444321 22222
Q ss_pred HHHHHhhcCCCCc-cc-HHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCC-----------CCcEEEEec
Q 036345 249 AIIEALEGSASNL-GE-LQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGL-----------RGSKILVTT 315 (954)
Q Consensus 249 ~i~~~l~~~~~~~-~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiTt 315 (954)
. .+.+...+. .. ....... ......=.|+||+|..-.......+...+..+. ...+||.||
T Consensus 265 ~---~lfg~~~~~~~~~~~~~~g~---~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s 338 (534)
T TIGR01817 265 S---ELFGHEKGAFTGAIAQRKGR---FELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAAT 338 (534)
T ss_pred H---HHcCCCCCccCCCCcCCCCc---ccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeC
Confidence 2 221211100 00 0000000 011233458899997666666666766664431 125888877
Q ss_pred Cch
Q 036345 316 RKK 318 (954)
Q Consensus 316 r~~ 318 (954)
...
T Consensus 339 ~~~ 341 (534)
T TIGR01817 339 NRD 341 (534)
T ss_pred CCC
Confidence 543
No 297
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.055 Score=52.81 Aligned_cols=118 Identities=20% Similarity=0.137 Sum_probs=60.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhh--cCCC----C--------cccH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALE--GSAS----N--------LGEL 264 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~--~~~~----~--------~~~~ 264 (954)
-.+++|+|..|.|||||++.++.... .....+++.-....+.. ......+. .+.. . ...-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 35899999999999999999987421 12233333211000000 00001110 0000 0 1111
Q ss_pred HHHHHHHHHHhcCceeEEEecCCCC-CCccChhhHHhhhcCC-CCCcEEEEecCchhHHh
Q 036345 265 QSLLQRIQTSIAGKKFLLVLDDMWT-DDYSKWEPFNNCLMNG-LRGSKILVTTRKKTVAQ 322 (954)
Q Consensus 265 ~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~v~~ 322 (954)
+...-.+.+.+-.++=++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2233345666677888999999733 1223333444444331 23677888888876554
No 298
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.045 Score=65.33 Aligned_cols=122 Identities=17% Similarity=0.216 Sum_probs=74.7
Q ss_pred ceeechhhhhHHHHHhhccCCCCC--CceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 173 EVRGRDEEKNSLKSKLLCESSQQP--NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
.++|.++.+..|.+.+.....+-. .....+.+.|+.|+|||-||++++.. +-+..+..+-++.++ ...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse------~~e-- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSE------FQE-- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhh------hhh--
Confidence 578888888888888876543212 25778899999999999999888762 322333444444443 222
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHHhcCcee-EEEecCCCCCCccChhhHHhhhcCC
Q 036345 251 IEALEGSASNLGELQSLLQRIQTSIAGKKF-LLVLDDMWTDDYSKWEPFNNCLMNG 305 (954)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~ 305 (954)
..++.+.+++-.. .+....|.+.++.++| +|+||||...++.....+...+..+
T Consensus 633 vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 3333333222111 1223366777777775 7889999766655555455555443
No 299
>PTZ00035 Rad51 protein; Provisional
Probab=95.81 E-value=0.047 Score=59.13 Aligned_cols=71 Identities=17% Similarity=0.070 Sum_probs=45.7
Q ss_pred hhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccc----ccccceEEEEEeCCCCCHHHHHHHHHHHhhc
Q 036345 181 KNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDV----MNSFEIRMWVCVSDPFDEFRVARAIIEALEG 256 (954)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 256 (954)
...+.++|... -....++.|+|.+|+|||||+..++-.... ...-..++|++....|+.++ +.++++.++.
T Consensus 104 ~~~LD~lLgGG----i~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 104 STQLDKLLGGG----IETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred cHHHHHHhCCC----CCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 34455555432 235679999999999999999888643221 11123567999888777776 4445555543
No 300
>PHA02244 ATPase-like protein
Probab=95.80 E-value=0.029 Score=60.16 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
-|.|+|+.|+|||+||+.++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3778999999999999999873
No 301
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.78 E-value=0.032 Score=52.43 Aligned_cols=21 Identities=43% Similarity=0.498 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999885
No 302
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.78 E-value=0.011 Score=58.96 Aligned_cols=108 Identities=21% Similarity=0.216 Sum_probs=52.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHh----
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSI---- 275 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 275 (954)
+++.|.|++|.||||+++.+... .... ...+.+..... +....+.+..+.. ...+..........-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~----~Aa~~L~~~~~~~---a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTN----KAAKELREKTGIE---AQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSH----HHHHHHHHHHTS----EEEHHHHTTEECCEECCSS
T ss_pred eEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcH----HHHHHHHHhhCcc---hhhHHHHHhcCCccccccc
Confidence 47889999999999999888763 2222 23333333332 2222233332211 111111110000000
Q ss_pred --cCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchh
Q 036345 276 --AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKT 319 (954)
Q Consensus 276 --~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 319 (954)
..++-+||+|+++-.+...+..+...... .|+++|+.--..+
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 12345999999965555555555554433 5778887765443
No 303
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.77 E-value=0.14 Score=50.02 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCceeEEEecCCCCC-CccChhhHHhhhcC-CCCCcEEEEecCchhHHhhh
Q 036345 265 QSLLQRIQTSIAGKKFLLVLDDMWTD-DYSKWEPFNNCLMN-GLRGSKILVTTRKKTVAQMM 324 (954)
Q Consensus 265 ~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iiiTtr~~~v~~~~ 324 (954)
+.-.-.|.+.|.=++=++.||..-+. |++-..++...+.. ...|-..|+.|..-..|..+
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 34444567777777778999998432 33333333333332 34676778888877666654
No 304
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.74 E-value=0.052 Score=58.76 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=40.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMN----SFEIRMWVCVSDPFDEFRVARAIIEALE 255 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 255 (954)
...++-|+|++|+|||+++.+++-...... .=..++||+....|+..++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 567899999999999999987765321111 114789999998888777554 445443
No 305
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.18 Score=59.00 Aligned_cols=183 Identities=16% Similarity=0.139 Sum_probs=103.3
Q ss_pred CCceeechhh---hhHHHHHhhccCC---CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 171 VSEVRGRDEE---KNSLKSKLLCESS---QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 171 ~~~~vGr~~~---~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
-.++.|-++. ++++++.|..+.. -.-.-++=+.++|++|.|||-||++++.... +-|++++.
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSG----- 377 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSG----- 377 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------Cceeeech-----
Confidence 3567887755 5555556654321 0123466788999999999999999998532 33455554
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHHh-cCceeEEEecCCCCCCc---------------cChhhHHhhhcCCC--
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRIQTSI-AGKKFLLVLDDMWTDDY---------------SKWEPFNNCLMNGL-- 306 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~---------------~~~~~l~~~l~~~~-- 306 (954)
.+.++.+.+.. ......+...- ...+.+|.+|++..... ....++...+....
T Consensus 378 ---SEFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 378 ---SEFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ---HHHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 22333332221 12222232222 35678999998732111 11222222222222
Q ss_pred CCcEEEEecCchhHHhh--hcC---cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 036345 307 RGSKILVTTRKKTVAQM--MES---TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAA 378 (954)
Q Consensus 307 ~gs~iiiTtr~~~v~~~--~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 378 (954)
.+..++-+|+..++... +.. +..+.++.-+.....++|.-++-.-.. ..+..++++ |+....|.+=|.
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHH
Confidence 23333445555554332 222 567888888889999999988743332 134466666 999999988664
No 306
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.73 E-value=0.14 Score=55.61 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=33.3
Q ss_pred eeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 174 VRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
++|+...+.++.+.+..... ...-|.|+|..|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777776655442 2235789999999999999999763
No 307
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.73 E-value=0.053 Score=52.91 Aligned_cols=116 Identities=18% Similarity=0.217 Sum_probs=58.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC--CCCHHHHHHHHHHHhhc--CCCC----------cccHH
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD--PFDEFRVARAIIEALEG--SASN----------LGELQ 265 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~--~~~~----------~~~~~ 265 (954)
.+++|+|+.|.|||||++.++.... .....+++.-.. ....... .+.+.- +... ...-+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHHH
Confidence 4899999999999999999987421 122222221100 0011111 111110 0000 11112
Q ss_pred HHHHHHHHHhcCceeEEEecCCCCC-CccChhhHHhhhcC-CCCCcEEEEecCchhHHh
Q 036345 266 SLLQRIQTSIAGKKFLLVLDDMWTD-DYSKWEPFNNCLMN-GLRGSKILVTTRKKTVAQ 322 (954)
Q Consensus 266 ~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iiiTtr~~~v~~ 322 (954)
...-.+.+.+-.++=++++|+.... |......+...+.. ...|..||++|.+.....
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2233345555566678999987431 22233334444432 224677888888876654
No 308
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.067 Score=60.80 Aligned_cols=161 Identities=14% Similarity=0.065 Sum_probs=85.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC--CHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHh
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF--DEFRVARAIIEALEGSASNLGELQSLLQRIQTSI 275 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 275 (954)
...-|.|.|+.|+|||+||+.+++... +.+.-.+..|+++.-. ..+.+++ .+...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk-----------------~l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQK-----------------FLNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHH-----------------HHHHHHHHHH
Confidence 345789999999999999999998643 4455556677766421 1111111 1222334455
Q ss_pred cCceeEEEecCCCC------CCccChhh----HHhhhc-----CCCCCcE--EEEecCchhHHh-hhcC----cceEeCC
Q 036345 276 AGKKFLLVLDDMWT------DDYSKWEP----FNNCLM-----NGLRGSK--ILVTTRKKTVAQ-MMES----TDVFSIK 333 (954)
Q Consensus 276 ~~kr~LlVlDdvw~------~~~~~~~~----l~~~l~-----~~~~gs~--iiiTtr~~~v~~-~~~~----~~~~~l~ 333 (954)
.-.+-+|||||+.- .+..+|.. +..++. ....+.+ +|-|.....-.. .+.. .....+.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 67788999999832 11233432 222221 1234554 333433322111 1111 2367788
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCC-ChHHHHH
Q 036345 334 ELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKG-LPLAAKT 380 (954)
Q Consensus 334 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~ 380 (954)
.+...+--++++...-. .. .....+...-+..+|+| .|.-+..
T Consensus 572 ap~~~~R~~IL~~~~s~-~~---~~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSK-NL---SDITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred CcchhHHHHHHHHHHHh-hh---hhhhhHHHHHHHHhcCCccchhHHH
Confidence 88888887777764421 11 11122223337888877 3444433
No 309
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.60 E-value=0.038 Score=62.15 Aligned_cols=89 Identities=19% Similarity=0.082 Sum_probs=44.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD-PFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIA 276 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 276 (954)
..++|+|+|++|+||||++.++......+.....+..++... .....+.+....+.++.......+...+...+.+. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 457999999999999999988765311111123344454322 11122222222222222211222333444444333 3
Q ss_pred CceeEEEecCCC
Q 036345 277 GKKFLLVLDDMW 288 (954)
Q Consensus 277 ~kr~LlVlDdvw 288 (954)
..=+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34588889874
No 310
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.06 Score=59.15 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=50.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccc--cccceEEEEEeCCCCCHH--HHHHHHHHHhhcCCCCcccHHHHHHHHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVM--NSFEIRMWVCVSDPFDEF--RVARAIIEALEGSASNLGELQSLLQRIQT 273 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 273 (954)
..++|.++|+.|+||||.+.+++...... .+-..+..+++.. +... .-+....+.++.+.......+.+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 45799999999999999998887632211 1123455555543 2222 22444444444432222344455444444
Q ss_pred HhcCceeEEEecCCCC
Q 036345 274 SIAGKKFLLVLDDMWT 289 (954)
Q Consensus 274 ~l~~kr~LlVlDdvw~ 289 (954)
. .+.-+|++|.+-.
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 4456899998854
No 311
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.074 Score=57.30 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=52.9
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC-CHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHh
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF-DEFRVARAIIEALEGSASNLGELQSLLQRIQTSI 275 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 275 (954)
.+.+++.++|+.|+||||++..++.. ....-..+.+|++.... ...+-++...+.++.......+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 35689999999999999999888763 22222346667664322 2233444445544433222234455555554432
Q ss_pred c-CceeEEEecCCCC
Q 036345 276 A-GKKFLLVLDDMWT 289 (954)
Q Consensus 276 ~-~kr~LlVlDdvw~ 289 (954)
. +..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3446788898743
No 312
>PRK14974 cell division protein FtsY; Provisional
Probab=95.55 E-value=0.083 Score=56.87 Aligned_cols=89 Identities=19% Similarity=0.113 Sum_probs=46.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC--HHHHHHHHHHHhhcCCC---CcccHHH-HHHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD--EFRVARAIIEALEGSAS---NLGELQS-LLQRI 271 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~---~~~~~~~-~~~~l 271 (954)
...+|.++|+.|+||||++.+++.... ...+ .++.+... .+. ..+-+....+.++.... ...+... ....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~D-t~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAGD-TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecCC-cCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998877775311 1223 33344322 222 22334445555543211 1122222 22333
Q ss_pred HHHhcCceeEEEecCCCC
Q 036345 272 QTSIAGKKFLLVLDDMWT 289 (954)
Q Consensus 272 ~~~l~~kr~LlVlDdvw~ 289 (954)
........=+|++|-+-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 332222223899998844
No 313
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.55 E-value=0.085 Score=60.39 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=42.8
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEE
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVC 236 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 236 (954)
.+++--.+-++++..||...-.+ ....+++.+.|++|+||||.++.+++. -.|+.+-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~-~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSG-SSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhcc-CCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 34555556788888888754321 234579999999999999999999884 2456666764
No 314
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.55 E-value=0.0012 Score=76.89 Aligned_cols=61 Identities=23% Similarity=0.247 Sum_probs=36.3
Q ss_pred ccCcCceeeccCcc-ccc--ccccccCCCCccEEecccc-CCCcccc----ccccCCCCCCEEeccCcc
Q 036345 613 KLKHLRFLKLSQVD-LEE--LPETCCELVNLQTLDIEAC-GSLKRLP----QGIGKLVNLRHLMISHNV 673 (954)
Q Consensus 613 ~L~~L~~L~L~~~~-i~~--lp~~i~~L~~L~~L~L~~~-~~l~~lp----~~i~~l~~L~~L~l~~~~ 673 (954)
.++.|+.|.+..+. +.. +-.....+++|+.|++++| ......+ .....+.+|++|+++.+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 46777778777764 443 4455677788888888873 2222111 122345667777776664
No 315
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.54 E-value=0.0054 Score=36.37 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=8.6
Q ss_pred CceeeccCcccccccccc
Q 036345 617 LRFLKLSQVDLEELPETC 634 (954)
Q Consensus 617 L~~L~L~~~~i~~lp~~i 634 (954)
|++|+|++|.++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444555555444444443
No 316
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.54 E-value=0.29 Score=52.01 Aligned_cols=60 Identities=10% Similarity=0.090 Sum_probs=37.0
Q ss_pred eeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHH
Q 036345 174 VRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRV 246 (954)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 246 (954)
++=..+....+...+... +.|.|.|++|+||||+|+.++.. .... .+.|..+...+..++
T Consensus 47 y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChhhc
Confidence 333334455566666432 35899999999999999999873 2222 234555554444433
No 317
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.49 E-value=0.012 Score=54.27 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
--|+|.|++|+||||+++++.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 45899999999999999999863
No 318
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.46 E-value=0.071 Score=52.05 Aligned_cols=21 Identities=52% Similarity=0.585 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
++.++|++|+||||+++.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999988876
No 319
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.14 Score=50.44 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCceeEEEecCCCCCCccChhhH---HhhhcC-CCCCcEEEEecCchhHHhhhcCcceE
Q 036345 267 LLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPF---NNCLMN-GLRGSKILVTTRKKTVAQMMESTDVF 330 (954)
Q Consensus 267 ~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l---~~~l~~-~~~gs~iiiTtr~~~v~~~~~~~~~~ 330 (954)
....+.+.+-=++-+.|||...+ --+.+.+ ...+.. ..+|+-++|.|..+.++....++.++
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DS--GLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDS--GLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCc--CccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 33444444445667999999843 3344443 332322 24577788888888888877654443
No 320
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.44 E-value=0.021 Score=57.65 Aligned_cols=121 Identities=10% Similarity=0.087 Sum_probs=57.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCC---CcccHHHHHHHHHHHh
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSAS---NLGELQSLLQRIQTSI 275 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l 275 (954)
.+++.|+|+.|.||||+.+.+...... .+-...+| +.. .. ...+.++...+..... .......-.+++...+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~--a~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVP--ADS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeE--cCC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 478999999999999999888632111 01111111 110 00 0011122222221111 0111111122222222
Q ss_pred --cCceeEEEecCCCCCC-ccChhh----HHhhhcCC-CCCcEEEEecCchhHHhhh
Q 036345 276 --AGKKFLLVLDDMWTDD-YSKWEP----FNNCLMNG-LRGSKILVTTRKKTVAQMM 324 (954)
Q Consensus 276 --~~kr~LlVlDdvw~~~-~~~~~~----l~~~l~~~-~~gs~iiiTtr~~~v~~~~ 324 (954)
..++-|++||+.-... ..+... +...+... ..+..+|+||...+.+...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 3678899999985421 111111 22223222 2346899999998877654
No 321
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.42 E-value=0.087 Score=54.38 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=34.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARA 249 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 249 (954)
...++.|.|.+|+|||++|.++... .. ..-..++||+... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHH
Confidence 5679999999999999999776442 12 2345688888765 55555555
No 322
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.41 E-value=0.11 Score=52.85 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=65.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcc-----cc------ccc---ceEEEEEe----CC--CCCH----------------
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDND-----VM------NSF---EIRMWVCV----SD--PFDE---------------- 243 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~-----~~------~~f---~~~~wv~~----s~--~~~~---------------- 243 (954)
.+++|+|+.|.|||||.+.+..-.. +. ..+ ..+.||.= .. +.++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999966211 00 001 12444421 10 0111
Q ss_pred ------HHHHHHHHHHhhcCC-----C-CcccHHHHHHHHHHHhcCceeEEEecCCCC-CCccChhhHHhhhcC-CCCCc
Q 036345 244 ------FRVARAIIEALEGSA-----S-NLGELQSLLQRIQTSIAGKKFLLVLDDMWT-DDYSKWEPFNNCLMN-GLRGS 309 (954)
Q Consensus 244 ------~~~~~~i~~~l~~~~-----~-~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~-~~~gs 309 (954)
.+...+.++.++... . ..+.-+.-.-.+.+.|..+.=|++||+--. -|...-..+...+.. ...|.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 133344444443321 1 112223334456778888899999997532 122222233333332 12388
Q ss_pred EEEEecCchhHHh
Q 036345 310 KILVTTRKKTVAQ 322 (954)
Q Consensus 310 ~iiiTtr~~~v~~ 322 (954)
.|+++|.+-....
T Consensus 191 tIl~vtHDL~~v~ 203 (254)
T COG1121 191 TVLMVTHDLGLVM 203 (254)
T ss_pred EEEEEeCCcHHhH
Confidence 8999998865443
No 323
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.0009 Score=66.67 Aligned_cols=106 Identities=22% Similarity=0.272 Sum_probs=78.8
Q ss_pred cCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccccccCCCCccEEeccccCCCccccc--cccC
Q 036345 583 DQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQ--GIGK 660 (954)
Q Consensus 583 ~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~ 660 (954)
+.+.+.+.|++.|| .+..+ +.+..++.|+.|.||-|.|+.|. .+..+.+|+.|.|+.|. +..+.+ -+.+
T Consensus 16 sdl~~vkKLNcwg~------~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLkn 86 (388)
T KOG2123|consen 16 SDLENVKKLNCWGC------GLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKN 86 (388)
T ss_pred hHHHHhhhhcccCC------CccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhc
Confidence 34567788999999 66655 44668999999999999999884 57899999999999987 655543 3568
Q ss_pred CCCCCEEeccCccccccCCCC-----CCCCCCCCccCceEec
Q 036345 661 LVNLRHLMISHNVYLDYMPKG-----IERLTCLRTLRELVVS 697 (954)
Q Consensus 661 l~~L~~L~l~~~~~~~~~p~~-----i~~L~~L~~L~~~~~~ 697 (954)
+++|+.|-+..|+....-+.. +..|++|+.|+...+.
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhccCcccc
Confidence 899999999887655443322 4456677777655543
No 324
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.38 E-value=0.09 Score=58.77 Aligned_cols=57 Identities=21% Similarity=0.102 Sum_probs=34.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCC-CCHHHHHHHHHHHhhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDP-FDEFRVARAIIEALEG 256 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~ 256 (954)
.+.+|.++|..|+||||.|..++.. ....-..+.-|++... ....+.+..+.++++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 4679999999999999999888763 2222123444443321 1223345555555543
No 325
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.36 E-value=0.024 Score=60.28 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=23.9
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcC
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..++.++|||++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999994
No 326
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.22 Score=55.87 Aligned_cols=155 Identities=21% Similarity=0.316 Sum_probs=88.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGK 278 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 278 (954)
+.-|.+||++|.|||-||++|+|. .+..| ++|-.+ +++...-++ +.....+.+++.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP--------ELlNkYVGE-----SErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP--------ELLNKYVGE-----SERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH--------HHHHHHhhh-----HHHHHHHHHHHhhcCC
Confidence 456789999999999999999994 44444 344331 122221111 1223334444444567
Q ss_pred eeEEEecCCCC-----CCccChh------hHHhhhcC--CCCCcEEEEecCchhHHhh--hcC---cceEeCCCCCHHHH
Q 036345 279 KFLLVLDDMWT-----DDYSKWE------PFNNCLMN--GLRGSKILVTTRKKTVAQM--MES---TDVFSIKELSKQEC 340 (954)
Q Consensus 279 r~LlVlDdvw~-----~~~~~~~------~l~~~l~~--~~~gs~iiiTtr~~~v~~~--~~~---~~~~~l~~L~~~~~ 340 (954)
+++|+||.+.. .+...|. +|..-+.. ...|.-||-.|..+++... +.. .....++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 89999999832 1112222 22222221 2356677777766655332 222 45778888889999
Q ss_pred HHHHHHHHcCCCCC-CCchhHHHHHHHHHHhcCCCh
Q 036345 341 WSLFKRFAFFGRHP-SECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 341 ~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~c~glP 375 (954)
.++++...-....+ ..+-++++++.. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 99999877532222 223356665542 4566654
No 327
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.33 E-value=0.081 Score=58.97 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+.++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999877765
No 328
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.31 E-value=0.088 Score=53.87 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=31.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
..++.|.|..|+||||+|.+++.. -.+.. ..+++++.. .+..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCC--CCHHHHHHHH
Confidence 458999999999999998655442 11222 345666633 3556666665
No 329
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.31 E-value=0.024 Score=55.90 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=44.3
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHh--hcCCCCcccHHHHHHHHHHH
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEAL--EGSASNLGELQSLLQRIQTS 274 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~l~~~ 274 (954)
+.+.+|+|.|.+|+||||+|+.++.. ..... ++-++...-+. ..-.....+.. .-..+..-+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LGVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hCcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45689999999999999999999883 33221 11111111010 00000010111 11233455677888888888
Q ss_pred hcCce
Q 036345 275 IAGKK 279 (954)
Q Consensus 275 l~~kr 279 (954)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 330
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.29 E-value=0.073 Score=55.50 Aligned_cols=126 Identities=16% Similarity=0.101 Sum_probs=65.4
Q ss_pred hhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEE---eCCCCCHHHHHHHHHHHhhcC
Q 036345 181 KNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVC---VSDPFDEFRVARAIIEALEGS 257 (954)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~~i~~~l~~~ 257 (954)
.+.++..+.. .+...-++|+|+.|.|||||.+.+.... . .....+++. +...... .++......-
T Consensus 98 ~~~~l~~l~~-----~~~~~~~~i~g~~g~GKttl~~~l~~~~--~-~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~ 165 (270)
T TIGR02858 98 ADKLLPYLVR-----NNRVLNTLIISPPQCGKTTLLRDLARIL--S-TGISQLGLRGKKVGIVDER----SEIAGCVNGV 165 (270)
T ss_pred HHHHHHHHHh-----CCCeeEEEEEcCCCCCHHHHHHHHhCcc--C-CCCceEEECCEEeecchhH----HHHHHHhccc
Confidence 4445555543 2245689999999999999999998742 1 222233332 1110011 2232222111
Q ss_pred --C-----CCcccHHHHHHHHHHHhc-CceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHHhh
Q 036345 258 --A-----SNLGELQSLLQRIQTSIA-GKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQM 323 (954)
Q Consensus 258 --~-----~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~ 323 (954)
. .+..+.......+...+. -.+=++++|++- ..+.+..+...+. .|..||+||....+...
T Consensus 166 ~q~~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 166 PQHDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccccccccchHHHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 0 001110111222333332 467799999983 3344555544442 47789999998766443
No 331
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.28 E-value=0.6 Score=49.54 Aligned_cols=153 Identities=14% Similarity=0.078 Sum_probs=88.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCc---c---cc--cccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDN---D---VM--NSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQ 269 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~---~---~~--~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 269 (954)
-..+..++|..|.||+++|..+.+.- . +. .|-+...++...+. ....+++.+
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~--------------------~i~vd~Ir~ 76 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDK--------------------DLSKSEFLS 76 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCC--------------------cCCHHHHHH
Confidence 45677899999999999997775521 0 01 11112222221111 111222222
Q ss_pred HHHHH-----hcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCc-hhHHhh-hcCcceEeCCCCCHHHHHH
Q 036345 270 RIQTS-----IAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRK-KTVAQM-MESTDVFSIKELSKQECWS 342 (954)
Q Consensus 270 ~l~~~-----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~ 342 (954)
...+. -.+++=++|+|++..........+...+.....++.+|++|.+ ..+... ......+++.++++++..+
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHH
Confidence 22221 1246778999999666666677788888777777777766643 444433 2346789999999999988
Q ss_pred HHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 036345 343 LFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKT 380 (954)
Q Consensus 343 lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 380 (954)
.+... + . + .+.+..++...+|.=-|+..
T Consensus 157 ~l~~~--~-~----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 157 KLLSK--N-K----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHc--C-C----C---hhHHHHHHHHcCCHHHHHHH
Confidence 77653 1 1 1 23355566667763344443
No 332
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.27 E-value=0.046 Score=59.30 Aligned_cols=133 Identities=12% Similarity=0.052 Sum_probs=71.3
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAII 251 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 251 (954)
..++|+...+.++.+.+..... ...-|.|+|..|+||+++|+.+...... .-...+.|++... + ...+..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~-~-~~~~~~-- 75 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAAL-N-ENLLDS-- 75 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCC-C-HHHHHH--
Confidence 3589999888888887765542 2235789999999999999999763111 1122334444442 2 222222
Q ss_pred HHhhcCCCCc-cc-HHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCC-----------CCcEEEEecCch
Q 036345 252 EALEGSASNL-GE-LQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGL-----------RGSKILVTTRKK 318 (954)
Q Consensus 252 ~~l~~~~~~~-~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr~~ 318 (954)
.+.+..... .. .......+. ....=.|+||||..-.......+...+..+. ...+||.||...
T Consensus 76 -~lfg~~~~~~~g~~~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 76 -ELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred -HHccccccccCCcccccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 121111000 00 000011111 1222347899996655555666766664321 135888877553
No 333
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.26 E-value=0.018 Score=60.97 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=45.1
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhc
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...|+|.++.++++++.+...+.+.+..-+|+.++|+.|.||||||+.+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999877765567789999999999999999998876
No 334
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.25 E-value=0.052 Score=55.07 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 335
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.21 E-value=0.1 Score=49.89 Aligned_cols=117 Identities=18% Similarity=0.150 Sum_probs=61.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceE--EEEEeCCCCCHHHHHHHHHHHhh-----cC----CCCc-cc---
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIR--MWVCVSDPFDEFRVARAIIEALE-----GS----ASNL-GE--- 263 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~--~wv~~s~~~~~~~~~~~i~~~l~-----~~----~~~~-~~--- 263 (954)
...|-|++..|.||||.|-.+.-. .....+... =|+...........+... .+. .. ..+. .+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 357888888999999999554331 111122221 133333233344444332 111 00 0000 01
Q ss_pred HHHHHHHHHHHhcCcee-EEEecCCC---CCCccChhhHHhhhcCCCCCcEEEEecCch
Q 036345 264 LQSLLQRIQTSIAGKKF-LLVLDDMW---TDDYSKWEPFNNCLMNGLRGSKILVTTRKK 318 (954)
Q Consensus 264 ~~~~~~~l~~~l~~kr~-LlVlDdvw---~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 318 (954)
.....+..++.+...+| +||||.+- +...-..+.+...+.....+..||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12233334455555554 99999982 112234556777776666788999999986
No 336
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.18 E-value=0.067 Score=56.26 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.6
Q ss_pred CceEEEEEEecCCchHHHHHHHHhc
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987754
No 337
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.18 E-value=0.098 Score=52.42 Aligned_cols=120 Identities=16% Similarity=0.146 Sum_probs=60.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCc--c-cccc--c--------------ceEEEEEeCCCCCH--HHHHHHHHHHhhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDN--D-VMNS--F--------------EIRMWVCVSDPFDE--FRVARAIIEALEGS 257 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~--~-~~~~--f--------------~~~~wv~~s~~~~~--~~~~~~i~~~l~~~ 257 (954)
..+++|+|..|.|||||.+.+.... . ..+. | ...+++ +.+.... .....+++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~l~~~--- 101 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL-AFQYPPEIPGVKNADFLRYV--- 101 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE-eecChhhccCccHHHHHhhc---
Confidence 3589999999999999999987741 1 0110 0 000111 1121110 00111111111
Q ss_pred CCCcccHHHHHHHHHHHhcCceeEEEecCCCC-CCccChhhHHhhhcCC-CCCcEEEEecCchhHHh
Q 036345 258 ASNLGELQSLLQRIQTSIAGKKFLLVLDDMWT-DDYSKWEPFNNCLMNG-LRGSKILVTTRKKTVAQ 322 (954)
Q Consensus 258 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~v~~ 322 (954)
......-+...-.+.+.+-.++=++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 01122223333445566666777999998732 2233334444444332 23667888888776655
No 338
>PRK05439 pantothenate kinase; Provisional
Probab=95.18 E-value=0.069 Score=56.60 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=44.1
Q ss_pred CCceEEEEEEecCCchHHHHHHHHhcCcccccc--cceEEEEEeCCCCCHHHHHHHHHHHhh--cCCCCcccHHHHHHHH
Q 036345 196 PNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNS--FEIRMWVCVSDPFDEFRVARAIIEALE--GSASNLGELQSLLQRI 271 (954)
Q Consensus 196 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l 271 (954)
....-+|+|.|.+|+||||+|+.+..- .... -..+.-++...-+-..+.+.. ..+. ...+..-+.+.+.+.+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L 158 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFL 158 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHH
Confidence 456789999999999999999888662 2211 122334444332222222211 1111 1123344666677767
Q ss_pred HHHhcCce
Q 036345 272 QTSIAGKK 279 (954)
Q Consensus 272 ~~~l~~kr 279 (954)
.....++.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 66666654
No 339
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.17 E-value=0.063 Score=55.10 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=23.7
Q ss_pred CCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 196 PNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 196 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+...+++|.|+.|+|||||++.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999988873
No 340
>PRK07667 uridine kinase; Provisional
Probab=95.17 E-value=0.021 Score=56.76 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=29.0
Q ss_pred hhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhc
Q 036345 181 KNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+.+.+.+.... +...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456666665443 3458999999999999999998877
No 341
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.15 E-value=0.14 Score=52.66 Aligned_cols=115 Identities=16% Similarity=0.151 Sum_probs=62.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCC-------------------
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSA------------------- 258 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------------- 258 (954)
...++.|.|.+|+||||+|.++.... . ..-..++|++... +...+... +++++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~--~~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEE--SRESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccC--CHHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 45789999999999999998765421 1 2234678887644 33444333 22222110
Q ss_pred -----CCcccHHHHHHHHHHHhcC---ceeEEEecCCCC---CCccChhhHHhhhcC--CCCCcEEEEecCc
Q 036345 259 -----SNLGELQSLLQRIQTSIAG---KKFLLVLDDMWT---DDYSKWEPFNNCLMN--GLRGSKILVTTRK 317 (954)
Q Consensus 259 -----~~~~~~~~~~~~l~~~l~~---kr~LlVlDdvw~---~~~~~~~~l~~~l~~--~~~gs~iiiTtr~ 317 (954)
....+.+++...+.+..+. +.-.+|+|.+.. +++..-..+...+.. ...|..+|+|+..
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~ 165 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQY 165 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 0012455666666665542 345789998732 121111121111111 2357888888763
No 342
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.14 E-value=0.04 Score=55.09 Aligned_cols=120 Identities=15% Similarity=0.179 Sum_probs=58.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCccc---HHHHHHHHHHHh
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGE---LQSLLQRIQTSI 275 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~l 275 (954)
.+++.|.|+.|.||||+.+.+.... +..+ ...+|.+.. .. -.++..|...++........ ...-...+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~--~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQ--IGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHH--cCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3689999999999999998875421 1111 111111111 00 12223333333322111111 111111122222
Q ss_pred --cCceeEEEecCCCCC-CccChh----hHHhhhcCCCCCcEEEEecCchhHHhhhc
Q 036345 276 --AGKKFLLVLDDMWTD-DYSKWE----PFNNCLMNGLRGSKILVTTRKKTVAQMME 325 (954)
Q Consensus 276 --~~kr~LlVlDdvw~~-~~~~~~----~l~~~l~~~~~gs~iiiTtr~~~v~~~~~ 325 (954)
..++-|+++|+.-.. +..+.. .+...+. ..|+.+|++|...+++..+.
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 356789999998432 111111 1222222 23789999999998887654
No 343
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.13 E-value=0.12 Score=56.01 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=40.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccc----cccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVM----NSFEIRMWVCVSDPFDEFRVARAIIEALE 255 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 255 (954)
...++-|+|.+|+||||++.+++-..... ..-..++||+....|+.+++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 46789999999999999998876532211 011378999998888877654 4455443
No 344
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.16 Score=59.10 Aligned_cols=158 Identities=14% Similarity=0.139 Sum_probs=85.2
Q ss_pred CceeechhhhhHHHHHhhcc---CCC----CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCE---SSQ----QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~---~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
.++.|.+...+.+.+.+... ... .-...+.+.++|++|.|||.||+++++. ...+|-.+ ...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi~v-----~~~---- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFISV-----KGS---- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEEEe-----eCH----
Confidence 34566666555554433221 110 0235568999999999999999999993 33344322 210
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCC-----CCc------cChhhHHhhhcC--CCCCcEE
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWT-----DDY------SKWEPFNNCLMN--GLRGSKI 311 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~-----~~~------~~~~~l~~~l~~--~~~gs~i 311 (954)
.++.+..+ .....+...+....+..+..|++|++.. .+. .....+...+.. ...+..|
T Consensus 311 ----~l~sk~vG-----esek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 311 ----ELLSKWVG-----ESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred ----HHhccccc-----hHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 11111111 1112233333344457889999999832 110 112223333322 2234445
Q ss_pred EEecCchhHHhh-h-c--C-cceEeCCCCCHHHHHHHHHHHHc
Q 036345 312 LVTTRKKTVAQM-M-E--S-TDVFSIKELSKQECWSLFKRFAF 349 (954)
Q Consensus 312 iiTtr~~~v~~~-~-~--~-~~~~~l~~L~~~~~~~lf~~~~~ 349 (954)
|-||........ + . . ...+.+.+-+.++..+.|..+.-
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 555544433221 1 1 1 45889999999999999998874
No 345
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.12 E-value=0.06 Score=51.60 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=61.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC--CHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF--DEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAG 277 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 277 (954)
.+++|+|..|.|||||++.+.... ......+++...... .... ....+.-.. +...-+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEE----LRRRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHH----HHhceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 589999999999999999998742 223444444322111 1111 111111100 011222333335555666
Q ss_pred ceeEEEecCCCCC-CccChhhHHhhhcC-CCCCcEEEEecCchhHHhh
Q 036345 278 KKFLLVLDDMWTD-DYSKWEPFNNCLMN-GLRGSKILVTTRKKTVAQM 323 (954)
Q Consensus 278 kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iiiTtr~~~v~~~ 323 (954)
..=++++|+.-.. |......+...+.. ...+..++++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6788999998421 22333344444432 1225678888887766554
No 346
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.12 E-value=0.075 Score=53.25 Aligned_cols=61 Identities=18% Similarity=0.130 Sum_probs=38.9
Q ss_pred CCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEE---------eCCCCCHHHH--HHHHHHHhhcCC
Q 036345 196 PNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVC---------VSDPFDEFRV--ARAIIEALEGSA 258 (954)
Q Consensus 196 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---------~s~~~~~~~~--~~~i~~~l~~~~ 258 (954)
.+.+.+|.++||+|.||||..|.++.+. ...+....-|+ ..-+.++++. +++.+++.+..+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl--~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHL--HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHH--hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 4567789999999999999999988752 22222111122 2334456554 567778776543
No 347
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.12 E-value=0.062 Score=52.70 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
-.+++|+|+.|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999763
No 348
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.11 E-value=0.079 Score=55.06 Aligned_cols=89 Identities=19% Similarity=0.157 Sum_probs=57.3
Q ss_pred CCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHH-hhc----CCCCcccHHHHHHH
Q 036345 196 PNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEA-LEG----SASNLGELQSLLQR 270 (954)
Q Consensus 196 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~~----~~~~~~~~~~~~~~ 270 (954)
-+..+++=|+|+.|.||||+|.+++-. ....-..++|++....+++..+.. +... +.. ..........+...
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHH
Confidence 346789999999999999999776653 333344889999999998876543 3333 211 11122222334444
Q ss_pred HHHHhcCceeEEEecCC
Q 036345 271 IQTSIAGKKFLLVLDDM 287 (954)
Q Consensus 271 l~~~l~~kr~LlVlDdv 287 (954)
+.+....+--|+|+|.+
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 44444444569999988
No 349
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.10 E-value=0.088 Score=55.26 Aligned_cols=88 Identities=18% Similarity=0.149 Sum_probs=47.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH--HHHHHHHHHhhcCC---CCcccH-HHHHHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF--RVARAIIEALEGSA---SNLGEL-QSLLQRI 271 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~---~~~~~~-~~~~~~l 271 (954)
..+++.++|++|+||||++..++.. ....-..+.+++... +... +-+....+..+... ....+. ......+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4689999999999999999888763 222223455665442 3222 22333344433211 111122 2223334
Q ss_pred HHHhcCceeEEEecCCC
Q 036345 272 QTSIAGKKFLLVLDDMW 288 (954)
Q Consensus 272 ~~~l~~kr~LlVlDdvw 288 (954)
.....+..=++++|-.-
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 44333444578889773
No 350
>PRK13948 shikimate kinase; Provisional
Probab=95.08 E-value=0.19 Score=49.13 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+.|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999873
No 351
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.07 E-value=0.11 Score=57.64 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=49.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcC------CCCcccHH-----H
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGS------ASNLGELQ-----S 266 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~------~~~~~~~~-----~ 266 (954)
.-..++|+|..|+|||||++.+..... ....++|..-....++.++....+...... ..+..... .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 345799999999999999999887422 223445544333445555555444433211 11111111 1
Q ss_pred HHHHHHHHh--cCceeEEEecCC
Q 036345 267 LLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 267 ~~~~l~~~l--~~kr~LlVlDdv 287 (954)
..-.+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122234444 589999999999
No 352
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.04 E-value=0.015 Score=53.55 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=19.0
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 036345 202 ISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 202 i~I~G~~GiGKTtLa~~v~~~ 222 (954)
|+|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998773
No 353
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.03 E-value=0.018 Score=58.19 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=23.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcC
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
+...+|+|+|++|+||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999863
No 354
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.02 E-value=0.19 Score=51.00 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|+.|.|||||++.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999999764
No 355
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.01 E-value=0.016 Score=57.85 Aligned_cols=21 Identities=43% Similarity=0.581 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
||+|.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998876
No 356
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.12 Score=51.33 Aligned_cols=96 Identities=19% Similarity=0.213 Sum_probs=57.5
Q ss_pred CCceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
-+++-|=.++++++.+....+--. .-+.++-|.++|++|.|||-+|++|+| +....|-.+ -.
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacfirv-----ig---- 244 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACFIRV-----IG---- 244 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceEEee-----hh----
Confidence 345667777788877655433110 123456788999999999999999999 444444222 11
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcC-ceeEEEecCC
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQTSIAG-KKFLLVLDDM 287 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv 287 (954)
.++.++.-+ +-......+.+.-+. |-++|+||.+
T Consensus 245 ----selvqkyvg------egarmvrelf~martkkaciiffdei 279 (435)
T KOG0729|consen 245 ----SELVQKYVG------EGARMVRELFEMARTKKACIIFFDEI 279 (435)
T ss_pred ----HHHHHHHhh------hhHHHHHHHHHHhcccceEEEEeecc
Confidence 122222211 113445555555554 4589999987
No 357
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.97 E-value=0.21 Score=52.95 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=36.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALE 255 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 255 (954)
..++.|.|.+|+||||++.+++... ...+-..++|++... ...++...+...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 4588899999999999998876631 122234678887665 45666666655543
No 358
>PRK10867 signal recognition particle protein; Provisional
Probab=94.96 E-value=0.081 Score=59.00 Aligned_cols=24 Identities=42% Similarity=0.457 Sum_probs=20.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+.+|.++|++|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998766654
No 359
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.93 E-value=0.12 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...+|.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3459999999999999999999874
No 360
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.93 E-value=0.13 Score=53.51 Aligned_cols=102 Identities=10% Similarity=0.115 Sum_probs=50.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC-CHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhc-
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF-DEFRVARAIIEALEGSASNLGELQSLLQRIQTSIA- 276 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 276 (954)
..+++++|.+|+||||+++.+... ....=..+.+++..... ....-+....+.++.+.....+...+...+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 358999999999999999888653 21111245556554321 11111222222222221112233444444433322
Q ss_pred CceeEEEecCCCCC--CccChhhHHhhh
Q 036345 277 GKKFLLVLDDMWTD--DYSKWEPFNNCL 302 (954)
Q Consensus 277 ~kr~LlVlDdvw~~--~~~~~~~l~~~l 302 (954)
++.=++++|..-.. +....+.+...+
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~ 180 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETM 180 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHH
Confidence 24468899988443 223344444433
No 361
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.90 E-value=0.17 Score=49.76 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999874
No 362
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.87 E-value=0.017 Score=46.33 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
+|+|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988773
No 363
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.87 E-value=0.02 Score=58.00 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=23.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcC
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+..+|+|.|.+|+||||||+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999999873
No 364
>PRK06547 hypothetical protein; Provisional
Probab=94.87 E-value=0.029 Score=54.30 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=23.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcC
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
....+|+|.|++|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999764
No 365
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.11 Score=57.06 Aligned_cols=53 Identities=28% Similarity=0.296 Sum_probs=38.4
Q ss_pred CCceeechh---hhhHHHHHhhccCC---CCCCceEEEEEEecCCchHHHHHHHHhcCc
Q 036345 171 VSEVRGRDE---EKNSLKSKLLCESS---QQPNAIHVISLVGMGGIGKTTLAQFAYNDN 223 (954)
Q Consensus 171 ~~~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 223 (954)
-+++-|-|+ |+++|+++|..+.. -.+.=++-|.++|++|.|||-||++|+-..
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 345667664 67778888876531 012345678999999999999999999853
No 366
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.84 E-value=0.21 Score=49.77 Aligned_cols=118 Identities=17% Similarity=0.117 Sum_probs=58.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEE---------------EeCCCCC---HHHHHHHHHHHhhcCCCC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWV---------------CVSDPFD---EFRVARAIIEALEGSASN 260 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv---------------~~s~~~~---~~~~~~~i~~~l~~~~~~ 260 (954)
-.+++|.|+.|.|||||.+.+..-.. .......+++ .+.+... ...+...+.-..... .
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--~ 111 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--G 111 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--c
Confidence 45899999999999999999977420 0111111111 1112111 012222221100000 1
Q ss_pred cccHHHHHHHHHHHhcCceeEEEecCCCC-CCccChhhHHhhhcC-CCCCcEEEEecCchh
Q 036345 261 LGELQSLLQRIQTSIAGKKFLLVLDDMWT-DDYSKWEPFNNCLMN-GLRGSKILVTTRKKT 319 (954)
Q Consensus 261 ~~~~~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~-~~~gs~iiiTtr~~~ 319 (954)
...-+...-.+.+.+-.++=++++|+.-+ -|......+...+.. ...|..||++|.+..
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 12222233345556666777999998733 123333444444443 224677888887753
No 367
>PRK13949 shikimate kinase; Provisional
Probab=94.84 E-value=0.15 Score=49.43 Aligned_cols=22 Identities=45% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
-|.|+|+.|+||||+++.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 368
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.83 E-value=0.22 Score=56.23 Aligned_cols=130 Identities=21% Similarity=0.291 Sum_probs=70.6
Q ss_pred eEEEEEEecCCchHHH-HHHHHhcCcccccccceEEEEEeCCCCCHH--HHHHHHHHHhhcCCCC----------c----
Q 036345 199 IHVISLVGMGGIGKTT-LAQFAYNDNDVMNSFEIRMWVCVSDPFDEF--RVARAIIEALEGSASN----------L---- 261 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~----------~---- 261 (954)
-.||.|||..|.|||| |||.+|.+ .|..---+.+.++-.+. .+.+.+.+.++..... .
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~ 445 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSED 445 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCc
Confidence 4599999999999988 56777775 23222245556654443 3455666666432110 0
Q ss_pred ------ccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhc---CCCCCcEEEEecCch---hHHhhhcCcce
Q 036345 262 ------GELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLM---NGLRGSKILVTTRKK---TVAQMMESTDV 329 (954)
Q Consensus 262 ------~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~---~~~~gs~iiiTtr~~---~v~~~~~~~~~ 329 (954)
.+---+.+.|....-.|=-.||+|.+++... .-+.+...+. .....-++||||-.- ..++.++....
T Consensus 446 T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERsl-NtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~ 524 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSL-NTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQ 524 (1042)
T ss_pred eeEEEeccchHHHHHhhhhhhhheeEEEechhhhccc-chHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCce
Confidence 1111122223332223445899999976432 2233333332 233577999998653 44555565555
Q ss_pred EeCCC
Q 036345 330 FSIKE 334 (954)
Q Consensus 330 ~~l~~ 334 (954)
+.+++
T Consensus 525 f~IpG 529 (1042)
T KOG0924|consen 525 FTIPG 529 (1042)
T ss_pred eeecC
Confidence 55544
No 369
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.82 E-value=0.14 Score=53.02 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=18.1
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567999999999999977754
No 370
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.81 E-value=0.35 Score=48.78 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
-.+++|+|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 371
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.79 E-value=0.13 Score=53.85 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=29.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD 239 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 239 (954)
...++.|.|.+|+|||++|.+++..- .+ .=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEecC
Confidence 56789999999999999998875431 12 234677888764
No 372
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.79 E-value=0.031 Score=52.51 Aligned_cols=36 Identities=31% Similarity=0.217 Sum_probs=26.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEE
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVC 236 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 236 (954)
..||.|.|.+|+||||||+.+... ....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468999999999999999999873 434444455554
No 373
>PRK08233 hypothetical protein; Provisional
Probab=94.78 E-value=0.021 Score=56.39 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 374
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.78 E-value=0.053 Score=59.16 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=58.4
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCccc----ccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHH
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDV----MNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQ 272 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 272 (954)
..++=+.|||..|.|||.|.-.+|+.-.+ +-||. ....++-+.+..-...... ...+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~----l~~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDP----LPQVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCcc----HHHHH
Confidence 35677999999999999999999985322 22332 3334443333322112222 23344
Q ss_pred HHhcCceeEEEecCCCCCCccChhhHHhhhcC-CCCCcEEEEec
Q 036345 273 TSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMN-GLRGSKILVTT 315 (954)
Q Consensus 273 ~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iiiTt 315 (954)
+.+.++..||.||++.-.|..+-.-+...+.. ...|..+|.||
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTS 165 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATS 165 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecC
Confidence 55566777999999865555443334444433 34565555554
No 375
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.77 E-value=0.017 Score=51.59 Aligned_cols=27 Identities=41% Similarity=0.530 Sum_probs=18.6
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccccc
Q 036345 202 ISLVGMGGIGKTTLAQFAYNDNDVMNSFE 230 (954)
Q Consensus 202 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 230 (954)
|.|+|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999988 4556664
No 376
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=1 Score=44.61 Aligned_cols=155 Identities=13% Similarity=0.171 Sum_probs=85.2
Q ss_pred ceeec-hhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 173 EVRGR-DEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 173 ~~vGr-~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
+++|. +..+.+|.+.+.-+... .-.+++-+.++|++|.|||-||+.|+++ ...-|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----
Confidence 35554 66666666655433211 1235667889999999999999999984 23456777762
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHHh-cCceeEEEecCCCCCC-----------ccChhhHHhh---hcC--CCC
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRIQTSI-AGKKFLLVLDDMWTDD-----------YSKWEPFNNC---LMN--GLR 307 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~-----------~~~~~~l~~~---l~~--~~~ 307 (954)
++.++.-+.. ......+.-.. ..-+-+|++|.+.+.. .+........ +.. ..+
T Consensus 216 ----elvqk~igeg------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 216 ----ELVQKYIGEG------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred ----HHHHHHhhhh------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 2222222211 12222222111 2456788889884311 1111112222 222 235
Q ss_pred CcEEEEecCchhHHhh--hc---CcceEeCCCCCHHHHHHHHHHHH
Q 036345 308 GSKILVTTRKKTVAQM--ME---STDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 308 gs~iiiTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
+-+||.+|..-++... +. .+..++..+-+++.-.++++-+.
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 6688887765444332 11 25678888888888778876543
No 377
>PTZ00301 uridine kinase; Provisional
Probab=94.68 E-value=0.031 Score=56.00 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999998865
No 378
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.66 E-value=0.16 Score=50.53 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999985
No 379
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.65 E-value=0.24 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|+.|.|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999998653
No 380
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.65 E-value=0.044 Score=53.26 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999885
No 381
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.63 E-value=0.095 Score=60.84 Aligned_cols=134 Identities=14% Similarity=0.164 Sum_probs=74.8
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
...++|+...++++.+.+..... ...-|.|+|..|+|||++|+.+.+... ..-...+.|++..-.+ ..+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~--~~~e~- 256 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE--SLAES- 256 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh--HHHHH-
Confidence 46799999999998888876543 234688999999999999999987421 1112344555554321 22221
Q ss_pred HHHhhcCCCCc-cc-HHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCC-----------CCcEEEEecCc
Q 036345 251 IEALEGSASNL-GE-LQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGL-----------RGSKILVTTRK 317 (954)
Q Consensus 251 ~~~l~~~~~~~-~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr~ 317 (954)
.+.+...+. .. .......+ +. .+.- -|+||+|..-.......+...+..+. ...|||.||..
T Consensus 257 --~lfG~~~g~~~ga~~~~~g~~-~~-a~gG-tL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 257 --ELFGHVKGAFTGAISNRSGKF-EL-ADGG-TLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred --HhcCccccccCCCcccCCcch-hh-cCCC-EEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 222211100 00 00000011 11 1222 36899997655555666766664431 24588888865
Q ss_pred h
Q 036345 318 K 318 (954)
Q Consensus 318 ~ 318 (954)
.
T Consensus 332 ~ 332 (509)
T PRK05022 332 D 332 (509)
T ss_pred C
Confidence 3
No 382
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.62 E-value=0.5 Score=44.07 Aligned_cols=83 Identities=11% Similarity=0.206 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHHHHhhhchhhHH
Q 036345 2 VDAVINVVLDQLISISLQEAREELRLVVGVDQEVERLKRNFRAIQAVLVDAEQRQVK-EEAVRLWLDKLKHASYDMEDVL 80 (954)
Q Consensus 2 a~~~v~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~-~~~~~~wl~~l~~~~yd~ed~l 80 (954)
|+-+.+++++.+.+.+...+.+.......++.-+++|..+++.|.-++++.+..... +..-+.=+++|.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 444555555555555555777878888889999999999999999999998764321 2222566788888888999999
Q ss_pred HHHH
Q 036345 81 DEWI 84 (954)
Q Consensus 81 d~~~ 84 (954)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8873
No 383
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.60 E-value=0.22 Score=50.80 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|+.|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998753
No 384
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.59 E-value=0.2 Score=49.95 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6999999999999999988864
No 385
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.57 E-value=0.28 Score=58.54 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=81.9
Q ss_pred CceeechhhhhHHHHHhhccCCC------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQ------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFR 245 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 245 (954)
.++.|.+...+++.+.+...... ...-.+-|.++|++|+|||++|+.+++. ....| +.++.+.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------
Confidence 45677776666655543321100 0112234899999999999999999874 22222 2222221
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCC----------ccChhhH-Hhh---hcC--CCCCc
Q 036345 246 VARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDD----------YSKWEPF-NNC---LMN--GLRGS 309 (954)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----------~~~~~~l-~~~---l~~--~~~gs 309 (954)
+ ....... ........+.......+.+|++|+++.-. ...+... ... +.. ...+.
T Consensus 221 ~----~~~~~g~-----~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 F----VEMFVGV-----GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred h----HHhhhcc-----cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 1 1111110 11122223333334567899999984321 0111121 122 111 23455
Q ss_pred EEEEecCchhHHhh--hc---CcceEeCCCCCHHHHHHHHHHHHc
Q 036345 310 KILVTTRKKTVAQM--ME---STDVFSIKELSKQECWSLFKRFAF 349 (954)
Q Consensus 310 ~iiiTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~ 349 (954)
.||.||...+.... .. -...+.+...+.++..+++..+..
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 56667776654332 11 145788888888888888887663
No 386
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.55 E-value=0.13 Score=56.90 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=47.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcC-------CCCcccHHH----
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGS-------ASNLGELQS---- 266 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 266 (954)
....++|+|..|+|||||++.+..... ....++...-.....+.++....+..-+.. ..+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 345789999999999999999987432 112222222222333444544443332111 111111111
Q ss_pred -HHHHHHHHh--cCceeEEEecCC
Q 036345 267 -LLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 267 -~~~~l~~~l--~~kr~LlVlDdv 287 (954)
..-.+.+++ +++.+|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 122244555 588999999999
No 387
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.51 E-value=0.31 Score=49.87 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999998763
No 388
>PRK06762 hypothetical protein; Provisional
Probab=94.49 E-value=0.026 Score=54.77 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 389
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.43 E-value=0.2 Score=55.00 Aligned_cols=95 Identities=22% Similarity=0.189 Sum_probs=51.6
Q ss_pred hhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCC
Q 036345 181 KNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASN 260 (954)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 260 (954)
+.++.+.|...- ....++.|.|.+|+|||||+.+++.. ....-..++|++..+ +...+ ..-++.++.....
T Consensus 68 i~eLD~vLgGGi----~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE--s~~qi-~~Ra~rlg~~~~~ 138 (372)
T cd01121 68 IEELDRVLGGGL----VPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE--SPEQI-KLRADRLGISTEN 138 (372)
T ss_pred CHHHHHhhcCCc----cCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc--CHHHH-HHHHHHcCCCccc
Confidence 444555553321 24569999999999999999888763 222234677777543 23332 2223344432111
Q ss_pred -----cccHHHHHHHHHHHhcCceeEEEecCC
Q 036345 261 -----LGELQSLLQRIQTSIAGKKFLLVLDDM 287 (954)
Q Consensus 261 -----~~~~~~~~~~l~~~l~~kr~LlVlDdv 287 (954)
..+.+.+.+.+. +.+.-+||+|.+
T Consensus 139 l~l~~e~~le~I~~~i~---~~~~~lVVIDSI 167 (372)
T cd01121 139 LYLLAETNLEDILASIE---ELKPDLVIIDSI 167 (372)
T ss_pred EEEEccCcHHHHHHHHH---hcCCcEEEEcch
Confidence 123333333332 234557888887
No 390
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.42 E-value=0.14 Score=56.66 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=44.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD-PFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIA 276 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 276 (954)
...+++++|+.|+||||++.++............+..++... .....+-+....+.++.......+..+....+.. ++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 457999999999999999987765211111123344444332 1122223333444444332222333333333332 33
Q ss_pred CceeEEEecCC
Q 036345 277 GKKFLLVLDDM 287 (954)
Q Consensus 277 ~kr~LlVlDdv 287 (954)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 33 45677766
No 391
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.40 E-value=0.31 Score=49.77 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|..|.|||||++.+...
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999763
No 392
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.40 E-value=0.24 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|..|.|||||++.++..
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 393
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.88 Score=46.50 Aligned_cols=96 Identities=21% Similarity=0.318 Sum_probs=59.9
Q ss_pred CceeechhhhhHHHHHhhccCC------CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESS------QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFR 245 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 245 (954)
+++-|-|..++.|.+...-+-. +....-+-|.++|++|.||+.||++|+... ... |.+||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA--nST-----FFSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA--NST-----FFSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc--CCc-----eEEeehH-----
Confidence 4577888888888775433211 112346789999999999999999999842 222 3334431
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHHHh-cCceeEEEecCCC
Q 036345 246 VARAIIEALEGSASNLGELQSLLQRIQTSI-AGKKFLLVLDDMW 288 (954)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw 288 (954)
+++..-.+. -+.++..|.+.- +.|+-+|++|.+.
T Consensus 201 ---DLvSKWmGE------SEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 ---DLVSKWMGE------SEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred ---HHHHHHhcc------HHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 222222221 234555555554 4788999999983
No 394
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.38 E-value=0.18 Score=50.65 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=32.4
Q ss_pred HHHHHhcCceeEEEecCCCCC-CccChh-hHHhhhcCC-CC-CcEEEEecCchhHHhh
Q 036345 270 RIQTSIAGKKFLLVLDDMWTD-DYSKWE-PFNNCLMNG-LR-GSKILVTTRKKTVAQM 323 (954)
Q Consensus 270 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~-~l~~~l~~~-~~-gs~iiiTtr~~~v~~~ 323 (954)
.+.+.+..+.-++++|+.-.. +..... .+...+... .. |..||++|.+......
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 345566677889999998432 222334 444444332 22 5678888888776553
No 395
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.37 E-value=0.063 Score=56.98 Aligned_cols=83 Identities=22% Similarity=0.193 Sum_probs=49.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCC-----CcccHHHHHHHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSAS-----NLGELQSLLQRIQ 272 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 272 (954)
..+++-|+|+.|+||||||-.+... ....-..++|++....++.. .+++++.+.. .....++......
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 4579999999999999999877763 33344678999988876653 3344443311 1123344555555
Q ss_pred HHhc-CceeEEEecCC
Q 036345 273 TSIA-GKKFLLVLDDM 287 (954)
Q Consensus 273 ~~l~-~kr~LlVlDdv 287 (954)
..++ +..-++|+|-|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 5554 44458899987
No 396
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.36 E-value=0.075 Score=49.12 Aligned_cols=44 Identities=27% Similarity=0.277 Sum_probs=32.1
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGS 257 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 257 (954)
+|.|-|++|+||||+|+.+.++-... .| +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999998842211 12 2236788888887654
No 397
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.35 E-value=0.083 Score=49.99 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998773
No 398
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.33 E-value=0.3 Score=50.50 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=32.5
Q ss_pred HHHHHhcCceeEEEecCCCCC-CccChhhHHhhhcCCCCCcEEEEecCchhHHhh
Q 036345 270 RIQTSIAGKKFLLVLDDMWTD-DYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQM 323 (954)
Q Consensus 270 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~ 323 (954)
.+.+.+-.++=++++|+.... |......+...+.....|..||++|.+......
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 345556667789999998431 233334455555432236678888887766543
No 399
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.32 E-value=0.16 Score=49.43 Aligned_cols=117 Identities=14% Similarity=0.045 Sum_probs=61.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEE---EEEeCCCCCHHHHHHHHHHHh-----hcC----C-CCccc--
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRM---WVCVSDPFDEFRVARAIIEAL-----EGS----A-SNLGE-- 263 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~---wv~~s~~~~~~~~~~~i~~~l-----~~~----~-~~~~~-- 263 (954)
...|.|+|..|-||||.|--+.-. ...+=..+. |+--.........+..+- .+ +.. . ....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHH
Confidence 458899999999999999554331 111111122 222221233333333310 01 000 0 00011
Q ss_pred -HHHHHHHHHHHhcCcee-EEEecCCC---CCCccChhhHHhhhcCCCCCcEEEEecCch
Q 036345 264 -LQSLLQRIQTSIAGKKF-LLVLDDMW---TDDYSKWEPFNNCLMNGLRGSKILVTTRKK 318 (954)
Q Consensus 264 -~~~~~~~l~~~l~~kr~-LlVlDdvw---~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 318 (954)
.....+..++.+...+| +||||++- +...-..+.+...+.....+..||+|-|..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233344455555554 99999982 122334566777777667788999999985
No 400
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.29 E-value=0.1 Score=54.49 Aligned_cols=22 Identities=36% Similarity=0.294 Sum_probs=17.8
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.|.|.|.+|+||||+|+.+...
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 5889999999999999998773
No 401
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.28 E-value=0.34 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|..|.|||||++.++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999999874
No 402
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.26 E-value=0.081 Score=53.03 Aligned_cols=84 Identities=20% Similarity=0.276 Sum_probs=48.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCC-CCHHHHHHHHHHHhhcC-------CCCcccHHH-----
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDP-FDEFRVARAIIEALEGS-------ASNLGELQS----- 266 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 266 (954)
..++|.|.+|+|||+|+..+.++.. -+..+++.+++. ..+.++..++...-..+ ..+......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4689999999999999999987531 234477777754 33444444442220000 111111111
Q ss_pred HHHHHHHHh--cCceeEEEecCC
Q 036345 267 LLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 267 ~~~~l~~~l--~~kr~LlVlDdv 287 (954)
..-.+.+++ +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 111122333 699999999999
No 403
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.25 E-value=0.44 Score=51.32 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=18.5
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 036345 202 ISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 202 i~I~G~~GiGKTtLa~~v~~~ 222 (954)
+.+.|++|+||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999988763
No 404
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.21 E-value=0.13 Score=56.72 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=49.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC-HHHHHHHHHHHhhcC-------CCCcccHH-----
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD-EFRVARAIIEALEGS-------ASNLGELQ----- 265 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~----- 265 (954)
...++|+|..|+|||||++.+++... .+.++.+-+.+... +.++...++..-... ..+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999987421 24555566665433 344555443331111 11111111
Q ss_pred HHHHHHHHHh--cCceeEEEecCC
Q 036345 266 SLLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 266 ~~~~~l~~~l--~~kr~LlVlDdv 287 (954)
...-.+.+++ +++.+|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1122234444 589999999999
No 405
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.21 E-value=0.022 Score=50.39 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=18.7
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 036345 202 ISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 202 i~I~G~~GiGKTtLa~~v~~~ 222 (954)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999998774
No 406
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.20 E-value=0.13 Score=58.07 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=44.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD-PFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAG 277 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 277 (954)
.+|++++|+.|+||||++.+++.....+..-..+..|+... .....+-+....+.++.......+..+....+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999998886322221112345555432 11222333333444433221112222222222 22334
Q ss_pred ceeEEEecCCC
Q 036345 278 KKFLLVLDDMW 288 (954)
Q Consensus 278 kr~LlVlDdvw 288 (954)
+ -.+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 3 477788763
No 407
>PRK03839 putative kinase; Provisional
Probab=94.20 E-value=0.03 Score=55.12 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 408
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.20 E-value=0.35 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|+.|.|||||++.+...
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998653
No 409
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.19 E-value=0.089 Score=57.42 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=35.9
Q ss_pred CceeechhhhhHHHHHhhcc-------CC-CCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 172 SEVRGRDEEKNSLKSKLLCE-------SS-QQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~-------~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..++|.++.+..+.-.+... .+ ...-..+.|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45888888888876555431 00 00113467899999999999999999874
No 410
>PRK04328 hypothetical protein; Provisional
Probab=94.19 E-value=0.15 Score=52.96 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=29.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD 239 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 239 (954)
...++.|.|.+|+|||+||.++... .. ..-..++|++..+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeC
Confidence 4678999999999999999876542 12 2345678888766
No 411
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.15 E-value=0.053 Score=49.48 Aligned_cols=39 Identities=26% Similarity=0.170 Sum_probs=27.8
Q ss_pred hhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 180 EKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
+.+++-+.|...- ....+|.+.|.-|+||||+++.+++.
T Consensus 7 ~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 7 AMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4445555544321 13458999999999999999999875
No 412
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.14 E-value=0.07 Score=53.95 Aligned_cols=66 Identities=24% Similarity=0.230 Sum_probs=37.0
Q ss_pred hhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH
Q 036345 180 EKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARA 249 (954)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 249 (954)
+..++++.+.... .+..+|+|.|++|+|||||+..+....+-+++=-.++=|+-|.+++--.++-+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 4556666665433 35679999999999999999877664222222223455555666665555444
No 413
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.10 E-value=0.32 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999753
No 414
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.10 E-value=0.035 Score=58.24 Aligned_cols=96 Identities=25% Similarity=0.300 Sum_probs=46.8
Q ss_pred hHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCc
Q 036345 182 NSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNL 261 (954)
Q Consensus 182 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 261 (954)
..+++.+... -+-+.++|+.|+|||++++...+... ...| ...-++.+...+...+ +.++++-.....+.
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQL-QKIIESKLEKRRGR 92 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHH-HHCCCTTECECTTE
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHH-HHHHhhcEEcCCCC
Confidence 4455655532 24578999999999999998876311 1111 2333444443333322 22222110000000
Q ss_pred ccHHHHHHHHHHHhcCceeEEEecCCCCCCccChh
Q 036345 262 GELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWE 296 (954)
Q Consensus 262 ~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~ 296 (954)
....-.+|+.++++||+--...+.|.
T Consensus 93 ---------~~gP~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 93 ---------VYGPPGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp ---------EEEEESSSEEEEEEETTT-S---TTS
T ss_pred ---------CCCCCCCcEEEEEecccCCCCCCCCC
Confidence 00011478999999999544444443
No 415
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.08 E-value=0.47 Score=47.61 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 358999999999999999998764
No 416
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.07 E-value=0.45 Score=48.25 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|..|.|||||++.++..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 348999999999999999999764
No 417
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.06 E-value=0.27 Score=52.61 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=48.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeC-CCCCHHHHHHHHHHHhhcC-------CCCcccHH-----
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVS-DPFDEFRVARAIIEALEGS-------ASNLGELQ----- 265 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 265 (954)
...++|+|..|+|||||++.+.+.... +..+..-+. ...++.++....+..-... ..+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 357899999999999999999875321 233333333 2334555555444432111 11111111
Q ss_pred HHHHHHHHHh--cCceeEEEecCC
Q 036345 266 SLLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 266 ~~~~~l~~~l--~~kr~LlVlDdv 287 (954)
...-.+.+++ ++|.+||++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1122233444 589999999998
No 418
>PRK04040 adenylate kinase; Provisional
Probab=94.04 E-value=0.038 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+|+|+|++|+||||+++.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999773
No 419
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.03 E-value=0.12 Score=52.60 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.3
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 036345 202 ISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 202 i~I~G~~GiGKTtLa~~v~~~ 222 (954)
|.|+|++|+||||+|+.+.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999773
No 420
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.03 E-value=0.18 Score=59.84 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=48.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC--HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD--EFRVARAIIEALEGSASNLGELQSLLQRIQTSIA 276 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 276 (954)
.+|++++|+.|+||||.+.+++...........+..++... +. ..+-++...+.++.......+.+++...+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt-~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS-FRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc-cchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 47999999999999999988876421111112445554432 22 3344444445544333223344455444443 33
Q ss_pred CceeEEEecCCC
Q 036345 277 GKKFLLVLDDMW 288 (954)
Q Consensus 277 ~kr~LlVlDdvw 288 (954)
++ =+|++|=.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 33 367777663
No 421
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.02 E-value=0.076 Score=52.02 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998873
No 422
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.00 E-value=0.19 Score=51.85 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=52.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCccc--ccccceEEEEEeCCCC-CHHHHHHHHHHHhhcC-------CCCcccHH---
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDV--MNSFEIRMWVCVSDPF-DEFRVARAIIEALEGS-------ASNLGELQ--- 265 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 265 (954)
-..++|.|..|+|||+|+..+.++... +.+-+.++++-+.+.. .+.++...+...=... ..+.....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 346899999999999999888875321 1224667888887654 3444555444321110 11111111
Q ss_pred --HHHHHHHHHh---cCceeEEEecCC
Q 036345 266 --SLLQRIQTSI---AGKKFLLVLDDM 287 (954)
Q Consensus 266 --~~~~~l~~~l---~~kr~LlVlDdv 287 (954)
...-.+.+++ +++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1122344555 278999999999
No 423
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.98 E-value=0.074 Score=47.49 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=34.6
Q ss_pred CceeechhhhhHHHHHhhccC-CCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 172 SEVRGRDEEKNSLKSKLLCES-SQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~-~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..++|.+-..+.+.+.+..-- +..++.+-|++..|..|+|||.+++.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 346776655555555443221 112568899999999999999998777664
No 424
>PRK00625 shikimate kinase; Provisional
Probab=93.97 E-value=0.034 Score=53.88 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.|.++||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999773
No 425
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.97 E-value=0.41 Score=49.04 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCceeEEEecCCCC-CCccChhhHHhhhcC--CCCCcEEEEecCchhHHhhh
Q 036345 265 QSLLQRIQTSIAGKKFLLVLDDMWT-DDYSKWEPFNNCLMN--GLRGSKILVTTRKKTVAQMM 324 (954)
Q Consensus 265 ~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~--~~~gs~iiiTtr~~~v~~~~ 324 (954)
+.....+.+.|..+.=+++||+--+ -|...--.+...+.. ...|..||+++.+-..|..+
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 3344456677777878899997622 111111223333332 23577899999998776654
No 426
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.93 E-value=0.035 Score=54.01 Aligned_cols=24 Identities=46% Similarity=0.499 Sum_probs=21.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+|+|-||=|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 458999999999999999999984
No 427
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.91 E-value=0.7 Score=47.72 Aligned_cols=53 Identities=11% Similarity=0.229 Sum_probs=31.5
Q ss_pred HHHHhcCceeEEEecCCCC-CCccChhhHHhhhcCCCCCcEEEEecCchhHHhh
Q 036345 271 IQTSIAGKKFLLVLDDMWT-DDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQM 323 (954)
Q Consensus 271 l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~ 323 (954)
+.+.+-.++=++++|+... -|......+...+..-..|..||++|.+......
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 202 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN 202 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh
Confidence 3444445667999999743 2333334444444432346778888888776643
No 428
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.90 E-value=0.25 Score=54.92 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=49.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC-HHHHHHHHHHHhhcC-------CCCcccHH----
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD-EFRVARAIIEALEGS-------ASNLGELQ---- 265 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~---- 265 (954)
....++|+|..|+|||||++.+++... .+..+.+-+.+... +.++..+.+..-+.. ..+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 345789999999999999999987432 23445555655433 334444443322111 11111111
Q ss_pred -HHHHHHHHHh--cCceeEEEecCC
Q 036345 266 -SLLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 266 -~~~~~l~~~l--~~kr~LlVlDdv 287 (954)
...-.+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1122244444 589999999999
No 429
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.87 E-value=0.51 Score=53.61 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|+.|+|||||++.++..
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 430
>PRK05973 replicative DNA helicase; Provisional
Probab=93.87 E-value=0.21 Score=50.77 Aligned_cols=49 Identities=18% Similarity=0.094 Sum_probs=32.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
...++.|.|.+|+|||++|.++...- .+ .-..+++++... +..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~-a~-~Ge~vlyfSlEe--s~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA-MK-SGRTGVFFTLEY--TEQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH-Hh-cCCeEEEEEEeC--CHHHHHHHH
Confidence 34588999999999999998776531 22 234566776555 345555543
No 431
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.86 E-value=0.041 Score=54.64 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+..+|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 432
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.86 E-value=0.0046 Score=71.97 Aligned_cols=169 Identities=24% Similarity=0.265 Sum_probs=93.7
Q ss_pred ccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeee-cCCCCCC----cchhcccCccEEEEeCcC
Q 036345 736 DKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQY-KGKTVFP----SWIMSLCKLKVLLLSFCI 810 (954)
Q Consensus 736 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~lp----~~~~~l~~L~~L~L~~c~ 810 (954)
..+++|+.|.+..+.... +..+......+++|+.|+++++ ......+ .....+++|+.|+++.|.
T Consensus 185 ~~~~~L~~l~l~~~~~~~----------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKIT----------DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hhCchhhHhhhcccccCC----------hhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 347888888887664321 1123444566788999998873 2222112 112256888899999887
Q ss_pred C-CCc-CCCCC-CCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccccccccccccccccc
Q 036345 811 K-CEI-MPPLG-KLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNIT 887 (954)
Q Consensus 811 ~-~~~-l~~l~-~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~ 887 (954)
. .+. +..+. .+|+|+.|.+.+|..++.-+ +... ...+|+|++|++.+|..+++-... ....
T Consensus 255 ~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g--l~~i------------~~~~~~L~~L~l~~c~~~~d~~l~--~~~~ 318 (482)
T KOG1947|consen 255 LVTDIGLSALASRCPNLETLSLSNCSNLTDEG--LVSI------------AERCPSLRELDLSGCHGLTDSGLE--ALLK 318 (482)
T ss_pred ccCchhHHHHHhhCCCcceEccCCCCccchhH--HHHH------------HHhcCcccEEeeecCccchHHHHH--HHHH
Confidence 4 222 22333 38889999888887533222 1111 236888999999988876332111 1133
Q ss_pred cccccceecccccc---cCcCCCC--CCCCC-CCcceEEEecCcchhhh
Q 036345 888 VMPQLNSLKIENCS---KLKSLPD--QLLRS-TTLENLEIKKCPIVKES 930 (954)
Q Consensus 888 ~~p~L~~L~l~~c~---~l~~lp~--~~~~l-~~L~~L~l~~c~~l~~~ 930 (954)
.+|+|+.|.+..+. .++.+-. ..... ..+..+.+.+|+.++..
T Consensus 319 ~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~ 367 (482)
T KOG1947|consen 319 NCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDL 367 (482)
T ss_pred hCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchh
Confidence 46666665554443 3332211 01111 15666677777766554
No 433
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.85 E-value=0.098 Score=54.93 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=37.9
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
+..+++.|+|.+|+|||++|.++... ...+...++||+..+ +...+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e--~~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEE--SPEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecC--CHHHHHHHH
Confidence 46689999999999999999877763 445578899999877 344444443
No 434
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.84 E-value=0.068 Score=54.77 Aligned_cols=67 Identities=24% Similarity=0.213 Sum_probs=45.4
Q ss_pred hHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 036345 182 NSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIE 252 (954)
Q Consensus 182 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 252 (954)
.+++..+... .++..+|+|.|.+|+|||||...+.....-+++=-.++=|+-|.+++--.++-+=++
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 4455555433 346789999999999999999887765433444345666777777776666655444
No 435
>PRK08149 ATP synthase SpaL; Validated
Probab=93.81 E-value=0.31 Score=54.04 Aligned_cols=86 Identities=13% Similarity=0.265 Sum_probs=49.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHhhcC-------CCCcccHH----
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD-PFDEFRVARAIIEALEGS-------ASNLGELQ---- 265 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 265 (954)
....++|+|..|+|||||++.+++.... +.++...+.. ..++.++..+........ ..+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 3457899999999999999999874322 2333333333 234555555555532211 11111111
Q ss_pred -HHHHHHHHHh--cCceeEEEecCC
Q 036345 266 -SLLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 266 -~~~~~l~~~l--~~kr~LlVlDdv 287 (954)
.....+.+++ ++|++||++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 1222334444 589999999999
No 436
>PRK05922 type III secretion system ATPase; Validated
Probab=93.79 E-value=0.34 Score=53.76 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=47.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHhhcC-------CCCcccHH-----
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD-PFDEFRVARAIIEALEGS-------ASNLGELQ----- 265 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 265 (954)
-..++|+|..|+|||||.+.+.+... .+....+.+++ ...+.+.+.+........ ..+.....
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 34689999999999999999987421 23333333333 223344444443332211 11111111
Q ss_pred HHHHHHHHHh--cCceeEEEecCC
Q 036345 266 SLLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 266 ~~~~~l~~~l--~~kr~LlVlDdv 287 (954)
...-.+.+++ +++++|+++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1222344555 589999999999
No 437
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.78 E-value=0.21 Score=55.47 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=49.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCC-CCHHHHHHHHHHHhhcC-------CCCcccHHH---
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDP-FDEFRVARAIIEALEGS-------ASNLGELQS--- 266 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 266 (954)
....++|+|..|+|||||++.+.+.. +.+..+++.+.+. ..+.+++.+....=... ..+......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 34588999999999999999998743 2344555555543 33445555443210000 111111111
Q ss_pred --HHHHHHHHh--cCceeEEEecCC
Q 036345 267 --LLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 267 --~~~~l~~~l--~~kr~LlVlDdv 287 (954)
..-.+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 122244444 588999999999
No 438
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.75 E-value=0.89 Score=45.68 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|+.|.|||||++.+...
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 358999999999999999999774
No 439
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.72 E-value=0.79 Score=44.38 Aligned_cols=21 Identities=43% Similarity=0.506 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.|.+.|.+|+||||+|+++.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred eEEEecCCCCCchHHHHHHHH
Confidence 577899999999999998877
No 440
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.72 E-value=1.1 Score=47.16 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=40.8
Q ss_pred CceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCc-hhHHhhh-cCcceEeCCCC
Q 036345 277 GKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRK-KTVAQMM-ESTDVFSIKEL 335 (954)
Q Consensus 277 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v~~~~-~~~~~~~l~~L 335 (954)
+++=++|+|++.....+.+..+...+.....++.+|++|.+ ..+.... .....+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 55568899999877788889998888776667777766665 4443332 23456667655
No 441
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.71 E-value=0.3 Score=56.24 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=39.3
Q ss_pred hhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH
Q 036345 181 KNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARA 249 (954)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 249 (954)
+..+.++|... -..-.++.|.|++|+|||||+.++... ...+-..+++++..+ +..++...
T Consensus 249 i~~lD~~lgGG----~~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~ 309 (484)
T TIGR02655 249 VVRLDEMCGGG----FFKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRN 309 (484)
T ss_pred hHhHHHHhcCC----ccCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHH
Confidence 44555555432 235679999999999999999877663 222334567766554 45555555
No 442
>PF13479 AAA_24: AAA domain
Probab=93.70 E-value=0.15 Score=51.50 Aligned_cols=20 Identities=45% Similarity=0.403 Sum_probs=18.1
Q ss_pred EEEEEEecCCchHHHHHHHH
Q 036345 200 HVISLVGMGGIGKTTLAQFA 219 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v 219 (954)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 35789999999999999887
No 443
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.70 E-value=0.075 Score=52.25 Aligned_cols=43 Identities=33% Similarity=0.409 Sum_probs=31.4
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhc
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
-++++|.+..+..+.-.... ..-+.++|++|+|||++|+.+-.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 35688988888877665542 24689999999999999998854
No 444
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.69 E-value=0.07 Score=49.68 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=27.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD 239 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 239 (954)
.+|.|+|..|+|||||++.+.+.- .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 379999999999999999998842 234555555666554
No 445
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.68 E-value=0.81 Score=42.92 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHhhcCC-----C-CcccHHHHHHHHHHHhcCceeEEEecCCC-CCCccChhhHHhhhc--CCCCCcE
Q 036345 240 PFDEFRVARAIIEALEGSA-----S-NLGELQSLLQRIQTSIAGKKFLLVLDDMW-TDDYSKWEPFNNCLM--NGLRGSK 310 (954)
Q Consensus 240 ~~~~~~~~~~i~~~l~~~~-----~-~~~~~~~~~~~l~~~l~~kr~LlVlDdvw-~~~~~~~~~l~~~l~--~~~~gs~ 310 (954)
..+.....+..+.+++... + +...-++..-.+.+.+...+-+++-|+-- +-|.+.-+.+...+. ....|+.
T Consensus 120 ~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~T 199 (228)
T COG4181 120 SADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTT 199 (228)
T ss_pred cccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCce
Confidence 3455666777777776532 1 22333455556778888888888888651 112233334444433 2357889
Q ss_pred EEEecCchhHHhhhcC
Q 036345 311 ILVTTRKKTVAQMMES 326 (954)
Q Consensus 311 iiiTtr~~~v~~~~~~ 326 (954)
.++.|.++.+|..|..
T Consensus 200 lVlVTHD~~LA~Rc~R 215 (228)
T COG4181 200 LVLVTHDPQLAARCDR 215 (228)
T ss_pred EEEEeCCHHHHHhhhh
Confidence 9999999999887643
No 446
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.65 E-value=0.52 Score=48.39 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|.|||||.+.+...
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999753
No 447
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.63 E-value=0.045 Score=53.80 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998774
No 448
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.63 E-value=0.037 Score=55.42 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+|+|.|+.|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 449
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.60 E-value=0.16 Score=60.45 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=55.4
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCC-----CcccHHHHHHHH
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSAS-----NLGELQSLLQRI 271 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 271 (954)
...+++-|+|.+|+||||||.+++.. ....-..++|++..+.++. ..+++++.+.. .....+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 35678999999999999999765542 2223356789988887764 35666665321 122334455555
Q ss_pred HHHhc-CceeEEEecCCC
Q 036345 272 QTSIA-GKKFLLVLDDMW 288 (954)
Q Consensus 272 ~~~l~-~kr~LlVlDdvw 288 (954)
...++ ++--|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 455689999983
No 450
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.59 E-value=0.22 Score=55.17 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|.++|+.|+||||++.+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999987765
No 451
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.58 E-value=0.044 Score=54.93 Aligned_cols=61 Identities=25% Similarity=0.241 Sum_probs=42.2
Q ss_pred ccCcCceeeccCcccccccccccCCCCccEEecccc--CCCccccccccCCCCCCEEeccCccc
Q 036345 613 KLKHLRFLKLSQVDLEELPETCCELVNLQTLDIEAC--GSLKRLPQGIGKLVNLRHLMISHNVY 674 (954)
Q Consensus 613 ~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~--~~l~~lp~~i~~l~~L~~L~l~~~~~ 674 (954)
.+..|++|++.+..++.+- .+-.|++|++|+++.| .....++.-..++++|++|++++|..
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 3445556666555544331 2337899999999998 54456665566789999999999954
No 452
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.57 E-value=0.49 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|..|.|||||.+.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999753
No 453
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.55 E-value=0.17 Score=48.82 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=44.2
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcC--ce
Q 036345 202 ISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAG--KK 279 (954)
Q Consensus 202 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--kr 279 (954)
+.|.|..|+|||++|.++... ....++++.-.+.++.+ ....|.+.-... +......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRR-PAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCCC
Confidence 679999999999999988753 22356777766666553 333333322222 1211111222233333321 23
Q ss_pred eEEEecCC
Q 036345 280 FLLVLDDM 287 (954)
Q Consensus 280 ~LlVlDdv 287 (954)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 37999986
No 454
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.53 E-value=0.04 Score=53.90 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 455
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.52 E-value=0.054 Score=53.44 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=18.1
Q ss_pred EEEEEecCCchHHHHHHHHh
Q 036345 201 VISLVGMGGIGKTTLAQFAY 220 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~ 220 (954)
++.|.|+.|.||||+.+.+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 46799999999999998886
No 456
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.52 E-value=0.25 Score=54.81 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=51.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcC-------CCCccc-----HH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGS-------ASNLGE-----LQ 265 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~-----~~ 265 (954)
....++|+|..|+|||||++.++..... ...++...-.+...+.+.+...+..-+.. ..+... ..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 3457899999999999999999875321 12233332233356666666555542211 111111 11
Q ss_pred HHHHHHHHHh--cCceeEEEecCCC
Q 036345 266 SLLQRIQTSI--AGKKFLLVLDDMW 288 (954)
Q Consensus 266 ~~~~~l~~~l--~~kr~LlVlDdvw 288 (954)
.....+.+++ +++..||++||+-
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchH
Confidence 2223344444 4889999999993
No 457
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.52 E-value=0.047 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999883
No 458
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.51 E-value=0.81 Score=43.46 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
-.+++|+|+.|.||+||...|+-.
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhc
Confidence 458999999999999999998763
No 459
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.46 E-value=0.041 Score=54.31 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 460
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.44 E-value=0.16 Score=58.88 Aligned_cols=135 Identities=13% Similarity=0.018 Sum_probs=70.9
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
-..++|....+.++.+.+...+. .-.-|.|+|..|+||+++|+.+.... .+ .-...+.++++.-. ...+..
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s-~r-~~~pfv~inca~~~--~~~~e~- 273 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRS-PR-GKKPFLALNCASIP--DDVVES- 273 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhC-CC-CCCCeEEeccccCC--HHHHHH-
Confidence 35689998888888776654332 12247899999999999999986531 11 11233455554432 222222
Q ss_pred HHHhhcCCCCc-ccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCC-----------CCcEEEEecCch
Q 036345 251 IEALEGSASNL-GELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGL-----------RGSKILVTTRKK 318 (954)
Q Consensus 251 ~~~l~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr~~ 318 (954)
.+.+...+. ........-+.+ ....=.|+||++..-.......+...+..+. ...|||.||...
T Consensus 274 --elFG~~~~~~~~~~~~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 --ELFGHAPGAYPNALEGKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred --HhcCCCCCCcCCcccCCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 222211100 000000000111 1222347899997666555566766665431 134788877654
No 461
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.44 E-value=0.24 Score=51.18 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=47.0
Q ss_pred eEEEEEEecCCchHHHHH-HHHhcCcccccccceE-EEEEeCCCC-CHHHHHHHHHHHhhcC-------CCCcccHHH--
Q 036345 199 IHVISLVGMGGIGKTTLA-QFAYNDNDVMNSFEIR-MWVCVSDPF-DEFRVARAIIEALEGS-------ASNLGELQS-- 266 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-- 266 (954)
-..++|.|..|+|||+|| +.+.+.. .-+.+ +++-+.+.. .+.++...+.+.=... ..+......
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 356899999999999996 6666531 22333 566666543 3444555444321110 111111111
Q ss_pred ---HHHHHHHHh--cCceeEEEecCC
Q 036345 267 ---LLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 267 ---~~~~l~~~l--~~kr~LlVlDdv 287 (954)
..-.+.+++ +++.+|||+||+
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 112233333 589999999999
No 462
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.43 E-value=0.18 Score=51.52 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=48.2
Q ss_pred HhhCcHHHHHHHHHHHHHHHHHHHHH-hhcccchHHHHHHHHHHHHhhhchhhHHHHHH
Q 036345 27 LVVGVDQEVERLKRNFRAIQAVLVDA-EQRQVKEEAVRLWLDKLKHASYDMEDVLDEWI 84 (954)
Q Consensus 27 ~~~~~~~~~~~l~~~l~~i~~~l~~a-~~~~~~~~~~~~wl~~l~~~~yd~ed~ld~~~ 84 (954)
.+.-++.+++-++.+++.+|.||+.. ++...+.+.......++-..||++|+++|.+.
T Consensus 315 SlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 315 SLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 44567889999999999999999876 44344444588999999999999999999874
No 463
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.43 E-value=0.6 Score=48.43 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|..|.|||||.+.++..
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998753
No 464
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.39 E-value=0.29 Score=48.75 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=25.4
Q ss_pred EEEEEecCCchHHHHHHHHhcCccccccc--------ceEEEEEeCCC
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDVMNSF--------EIRMWVCVSDP 240 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~s~~ 240 (954)
++.|+|++|+||||++..+...-.....| ..++|+.....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 78899999999999997765532211111 35778776654
No 465
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.38 E-value=0.42 Score=50.99 Aligned_cols=59 Identities=17% Similarity=0.118 Sum_probs=39.3
Q ss_pred HHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC-CHHHHHHHH
Q 036345 183 SLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF-DEFRVARAI 250 (954)
Q Consensus 183 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i 250 (954)
++++.+..-. .-..++|.|..|+|||+|++++.+.. +-+.++++-+.+.- .+.+++.++
T Consensus 146 rvID~l~Pi~-----kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 146 RVLDTLFPVV-----KGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred hhhhcccccc-----CCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 4455554332 33478999999999999999999853 23467778776643 334455543
No 466
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.37 E-value=0.1 Score=51.50 Aligned_cols=43 Identities=23% Similarity=0.204 Sum_probs=27.9
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
.|+|.|-||+||||+|..+... -...+=..+.-|++..+++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceEEEEeCCCCCChH
Confidence 5899999999999999884432 122221335556666665544
No 467
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.36 E-value=0.33 Score=54.15 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=49.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcC-------CCCcccHH-----
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGS-------ASNLGELQ----- 265 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 265 (954)
.-..++|.|..|+|||||++.+....... ..+++..-.....+.++...+...-... ..+.....
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 34588999999999999999998753221 2344433333344445445444321110 11111111
Q ss_pred HHHHHHHHHh--cCceeEEEecCC
Q 036345 266 SLLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 266 ~~~~~l~~~l--~~kr~LlVlDdv 287 (954)
...-.+.+++ +++.+|+++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1122234444 588999999999
No 468
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.35 E-value=0.055 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
++|+|+|+.|+||||||+.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47999999999999999999883
No 469
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.33 E-value=0.057 Score=48.83 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEecCCchHHHHHHHHhcCc
Q 036345 202 ISLVGMGGIGKTTLAQFAYNDN 223 (954)
Q Consensus 202 i~I~G~~GiGKTtLa~~v~~~~ 223 (954)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 470
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.32 E-value=0.38 Score=51.72 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999999999999888764
No 471
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.31 E-value=0.069 Score=52.69 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=28.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVS 238 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 238 (954)
+++.|+|+.|+|||||++.+.. .....|...++.+..
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TTR 39 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTTR 39 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHH--hcccccccceeeccc
Confidence 5889999999999999999988 345567655555543
No 472
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.30 E-value=0.33 Score=54.20 Aligned_cols=89 Identities=19% Similarity=0.129 Sum_probs=51.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC-CHHHHHHHHHHHhhcC-------CCCcccHHH---
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF-DEFRVARAIIEALEGS-------ASNLGELQS--- 266 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 266 (954)
.-..++|.|.+|+|||||+..+....... +=+.++++-+.+.. .+.+++.++...=... ..+......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34578999999999999998876542211 11356677776543 3445555554421111 111111111
Q ss_pred --HHHHHHHHh---cCceeEEEecCC
Q 036345 267 --LLQRIQTSI---AGKKFLLVLDDM 287 (954)
Q Consensus 267 --~~~~l~~~l---~~kr~LlVlDdv 287 (954)
..-.+.+++ +++.+||++|++
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 222344555 689999999999
No 473
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.29 E-value=0.068 Score=51.34 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4569999999999999999998864
No 474
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.29 E-value=0.31 Score=46.33 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=19.3
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 036345 202 ISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 202 i~I~G~~GiGKTtLa~~v~~~ 222 (954)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999775
No 475
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.28 E-value=0.72 Score=48.65 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 348999999999999999999763
No 476
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.27 E-value=0.41 Score=48.57 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.|.|.|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 477
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.27 E-value=0.37 Score=49.97 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=36.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHh
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEAL 254 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 254 (954)
...++.|.|.+|+|||+++..++.+. ...+=..++|++... +..++...++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~-~~~~g~~vly~s~E~--~~~~~~~r~~~~~ 65 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENI-AKKQGKPVLFFSLEM--SKEQLLQRLLASE 65 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhCCCceEEEeCCC--CHHHHHHHHHHHh
Confidence 44689999999999999998776532 222123567776554 6677777766543
No 478
>PRK06217 hypothetical protein; Validated
Probab=93.23 E-value=0.052 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 479
>PRK15453 phosphoribulokinase; Provisional
Probab=93.22 E-value=0.34 Score=50.11 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|+|.|.+|+||||+|+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999998875
No 480
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.21 E-value=0.059 Score=31.87 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=17.4
Q ss_pred ceeEEEecCCCccccccccccchhhhcc
Q 036345 587 FLRTLKITGESAGVEKSIREIPKEIEKL 614 (954)
Q Consensus 587 ~Lr~L~L~~~~~~~~~~l~~lp~~i~~L 614 (954)
+|++|+|++| .+..+|+++++|
T Consensus 1 ~L~~Ldls~n------~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN------NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS------EESEEGTTTTT-
T ss_pred CccEEECCCC------cCEeCChhhcCC
Confidence 4889999999 788888877654
No 481
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.21 E-value=1.8 Score=44.74 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=73.5
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAII 251 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 251 (954)
+.|+|-.. .+++..++.... ...+.+.|+|+.|+|||+-++.+++. .+...-+..+..+....+...+.
T Consensus 72 ~~~l~tkt-~r~~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~ 140 (297)
T COG2842 72 PDFLETKT-VRRIFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIIC 140 (297)
T ss_pred ccccccch-hHhHhhhhhhhh----hcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHH
Confidence 45665533 333444443322 23347889999999999999999884 12233345666666666666666
Q ss_pred HHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhh
Q 036345 252 EALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCL 302 (954)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l 302 (954)
........ .........+...+++..=+++.|+...-....++.++...
T Consensus 141 ~~~~~~~~--~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 141 AAAFGATD--GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred HHHhcccc--hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHH
Confidence 65554422 23334455555666788889999998665556666666543
No 482
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.21 E-value=0.068 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999987766
No 483
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.19 E-value=0.44 Score=53.32 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=51.2
Q ss_pred eEEEEEEecCCchHHHHH-HHHhcCccc-----ccccceEEEEEeCCCCCHHHHHHHHHHHhhc-C-------CCCcccH
Q 036345 199 IHVISLVGMGGIGKTTLA-QFAYNDNDV-----MNSFEIRMWVCVSDPFDEFRVARAIIEALEG-S-------ASNLGEL 264 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~-------~~~~~~~ 264 (954)
-.-++|.|..|+|||+|| ..+.+...+ ..+-..++++-+++......-+.+.+++-+. . ..+....
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 356899999999999997 666665322 1233567888888765433333333433331 1 0111111
Q ss_pred HH-----HHHHHHHHh--cCceeEEEecCC
Q 036345 265 QS-----LLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 265 ~~-----~~~~l~~~l--~~kr~LlVlDdv 287 (954)
.. ..-.+.+++ +++.+|+|+||+
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 11 122233444 589999999999
No 484
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.17 E-value=0.13 Score=58.07 Aligned_cols=96 Identities=19% Similarity=0.178 Sum_probs=51.5
Q ss_pred HHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEE-EEEeCCCCCHHHHHHHHHHHhhcC----
Q 036345 183 SLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRM-WVCVSDPFDEFRVARAIIEALEGS---- 257 (954)
Q Consensus 183 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-wv~~s~~~~~~~~~~~i~~~l~~~---- 257 (954)
++++++..-. .-.-.+|+|++|+|||||++.+.+... ..+-++.+ .+-|.+..... .++-+.+...
T Consensus 405 RvIDll~PIG-----kGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVas 475 (672)
T PRK12678 405 RVIDLIMPIG-----KGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIAS 475 (672)
T ss_pred eeeeeecccc-----cCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEE
Confidence 4455554322 345678999999999999999988321 11223332 44455433222 2233333211
Q ss_pred CCCccc-----HHHHHHHHHHHh--cCceeEEEecCC
Q 036345 258 ASNLGE-----LQSLLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 258 ~~~~~~-----~~~~~~~l~~~l--~~kr~LlVlDdv 287 (954)
..+... ...+.-.+.+++ .++.+||++|++
T Consensus 476 T~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 476 TFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 111111 112222334444 689999999999
No 485
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.15 E-value=0.25 Score=47.78 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=42.9
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccH---HHHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGEL---QSLLQRIQTSIAG 277 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~l~~~l~~ 277 (954)
++.|.|.+|+||||+|..+.... . ...+++.....+ ..+....|.............. ..+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~---~~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--G---LQVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--C---CCcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 58999999999999999887631 1 123444444433 3344455544333222222111 1233344443332
Q ss_pred ceeEEEecCC
Q 036345 278 KKFLLVLDDM 287 (954)
Q Consensus 278 kr~LlVlDdv 287 (954)
.. ++++|.+
T Consensus 77 ~~-~VlID~L 85 (170)
T PRK05800 77 GR-CVLVDCL 85 (170)
T ss_pred CC-EEEehhH
Confidence 22 7899987
No 486
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.15 E-value=0.17 Score=55.45 Aligned_cols=113 Identities=17% Similarity=0.178 Sum_probs=60.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGK 278 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 278 (954)
...+.|.|+.|+||||+++.+.+. +......+++. +.++... ..... ..+-.......+.......++..++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNK-RSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCc-cceEEccccCCCCcCHHHHHHHhhccC
Confidence 358999999999999999988763 33333444443 2222110 10000 000000000111123456677788888
Q ss_pred eeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHHh
Q 036345 279 KFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQ 322 (954)
Q Consensus 279 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 322 (954)
.=.|++|++ .+.+.+..... ....|-.|+.|....++..
T Consensus 196 pd~i~vgEi--rd~~~~~~~l~---aa~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 196 PDVILIGEM--RDLETVELALT---AAETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred CCEEEEeCC--CCHHHHHHHHH---HHHcCCcEEEEEcCCCHHH
Confidence 889999999 34444443222 2234555666666655443
No 487
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.15 E-value=0.053 Score=51.47 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999998874
No 488
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.12 E-value=0.071 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.5
Q ss_pred CceEEEEEEecCCchHHHHHHHHhc
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
....+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999977
No 489
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.09 E-value=0.42 Score=53.26 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=47.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCC-CCHHHHHHHHHHHhhcC-------CCCcccHH-----
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDP-FDEFRVARAIIEALEGS-------ASNLGELQ----- 265 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 265 (954)
...++|+|..|+|||||++.+..... .+.++...+... ..+.++...+...-... ..+.....
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999987421 233333334332 23444444433321111 11111111
Q ss_pred HHHHHHHHHh--cCceeEEEecCC
Q 036345 266 SLLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 266 ~~~~~l~~~l--~~kr~LlVlDdv 287 (954)
...-.+.+++ +++++|+++||+
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecch
Confidence 1122244444 589999999999
No 490
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.08 E-value=0.18 Score=55.16 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=36.9
Q ss_pred CceeechhhhhHHHHHhhcc--------CCCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 172 SEVRGRDEEKNSLKSKLLCE--------SSQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..++|.+..++.+...+... ........+.|.++|+.|+|||+||+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889998888887776431 0000112467899999999999999999874
No 491
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.08 E-value=0.059 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999873
No 492
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.07 E-value=0.66 Score=46.97 Aligned_cols=121 Identities=11% Similarity=0.123 Sum_probs=57.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCC---CcccHHHHHHHHHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSAS---NLGELQSLLQRIQTS 274 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 274 (954)
..+++.|.|+.|.||||+.+.+.-.. +..+-.+.+|..-.. -..+.+|+..++..+. +......-...+...
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~i 104 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSHI 104 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHHH
Confidence 34688999999999999998886521 111111112211000 0001111111111110 111111112223333
Q ss_pred h--cCceeEEEecCCCCCC--ccCh---hhHHhhhcCCCCCcEEEEecCchhHHhhh
Q 036345 275 I--AGKKFLLVLDDMWTDD--YSKW---EPFNNCLMNGLRGSKILVTTRKKTVAQMM 324 (954)
Q Consensus 275 l--~~kr~LlVlDdvw~~~--~~~~---~~l~~~l~~~~~gs~iiiTtr~~~v~~~~ 324 (954)
+ ..++-|+++|+.-... .+.. ..+...+... .++.+|++|....++...
T Consensus 105 l~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 105 LSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 3 2578999999974321 1111 1122223222 578999999998887654
No 493
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.07 E-value=0.17 Score=55.21 Aligned_cols=113 Identities=17% Similarity=0.071 Sum_probs=65.4
Q ss_pred ceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 036345 173 EVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIE 252 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 252 (954)
.++|+++.+..+...+.... -+.+.|++|+|||+||+.++.. .. ...++|.+.......+++....-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCchhH
Confidence 48898888888777776433 4889999999999999999883 22 23456666666666665444332
Q ss_pred HhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhc
Q 036345 253 ALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLM 303 (954)
Q Consensus 253 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~ 303 (954)
............ ....+ ...-+.++++|.++...+..-..+...+.
T Consensus 92 ~~~~~~~~~~~~--~~gpl---~~~~~~ill~DEInra~p~~q~aLl~~l~ 137 (329)
T COG0714 92 AALLLEPGEFRF--VPGPL---FAAVRVILLLDEINRAPPEVQNALLEALE 137 (329)
T ss_pred hhhhccCCeEEE--ecCCc---ccccceEEEEeccccCCHHHHHHHHHHHh
Confidence 221100000000 00000 01111599999998766554445555443
No 494
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.03 E-value=0.3 Score=54.22 Aligned_cols=86 Identities=15% Similarity=0.185 Sum_probs=47.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC-CHHHHHHHHHHHhhcC-------CCCcccHH----
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF-DEFRVARAIIEALEGS-------ASNLGELQ---- 265 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 265 (954)
....++|+|..|+|||||++.+.+... .+..+.+.+.+.. .+.++.......=... ..+.....
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 345789999999999999999887422 1233344454432 2333333332221000 11111111
Q ss_pred -HHHHHHHHHh--cCceeEEEecCC
Q 036345 266 -SLLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 266 -~~~~~l~~~l--~~kr~LlVlDdv 287 (954)
...-.+.+++ +++++|+++||+
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1122234444 588999999999
No 495
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.00 E-value=0.11 Score=49.13 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=29.4
Q ss_pred hhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 179 EEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 179 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|.+.+. + +++.++|..|||||||+..+..+
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45778888874 2 58999999999999999999885
No 496
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.99 E-value=0.28 Score=54.49 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
....++|+|..|+|||||++.+...
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcc
Confidence 4568999999999999999998874
No 497
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.98 E-value=0.46 Score=53.81 Aligned_cols=53 Identities=21% Similarity=0.110 Sum_probs=35.0
Q ss_pred hhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC
Q 036345 181 KNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD 239 (954)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 239 (954)
+..+.+.|...- ....++.|.|.+|+|||||+.+++.. ....-..++|++..+
T Consensus 66 i~~LD~~LgGGi----~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 66 IGELDRVLGGGL----VPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEE 118 (446)
T ss_pred cHHHHHHhcCCc----cCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccc
Confidence 445555554322 24569999999999999999888764 222224577877654
No 498
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.98 E-value=0.071 Score=53.05 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+++|+|..|.|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 34899999999999999999854
No 499
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=92.97 E-value=0.82 Score=53.66 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|+.|+|||||++.++..
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999864
No 500
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.97 E-value=0.056 Score=51.05 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+|.|+|+.|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
Done!